Query 007603
Match_columns 596
No_of_seqs 250 out of 1960
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 3.6E-25 1.2E-29 211.9 10.8 161 22-202 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 3.1E-24 1.1E-28 202.4 14.0 154 24-201 2-157 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 2.6E-24 8.8E-29 202.3 11.7 155 23-200 3-159 (160)
4 1j4w_A FUSE binding protein; s 99.9 4.2E-24 1.4E-28 203.8 10.9 159 23-198 1-174 (174)
5 2jvz_A KH type-splicing, FAR u 99.9 6.5E-24 2.2E-28 200.2 8.6 154 25-200 2-160 (164)
6 2anr_A Neuro-oncological ventr 99.9 1.9E-23 6.5E-28 199.9 11.5 162 271-441 3-176 (178)
7 2jzx_A Poly(RC)-binding protei 99.9 3.3E-23 1.1E-27 194.8 12.4 156 272-440 3-159 (160)
8 3krm_A Insulin-like growth fac 99.9 7.6E-23 2.6E-27 192.9 14.9 153 274-440 3-156 (163)
9 1j4w_A FUSE binding protein; s 99.9 1.6E-22 5.3E-27 192.9 13.0 158 273-438 2-174 (174)
10 3n89_A Defective in GERM LINE 99.9 4.2E-22 1.4E-26 208.4 16.7 231 125-444 26-266 (376)
11 2jvz_A KH type-splicing, FAR u 99.9 3.3E-22 1.1E-26 188.5 13.7 156 274-441 2-161 (164)
12 3n89_A Defective in GERM LINE 99.8 3E-19 1E-23 186.8 15.5 295 19-436 24-337 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 2.8E-17 9.6E-22 151.6 10.5 137 273-440 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 5.4E-17 1.8E-21 149.7 7.6 136 24-200 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.5 8.1E-15 2.8E-19 143.7 8.5 148 24-201 33-192 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.5 4.7E-14 1.6E-18 138.3 10.1 146 275-440 35-191 (219)
17 2axy_A Poly(RC)-binding protei 99.5 4.7E-14 1.6E-18 114.7 6.3 71 363-440 2-72 (73)
18 1zzk_A Heterogeneous nuclear r 99.5 1.4E-13 4.9E-18 114.4 8.5 73 364-441 5-77 (82)
19 1dtj_A RNA-binding neurooncolo 99.5 1.1E-13 3.6E-18 113.4 7.5 74 365-440 2-75 (76)
20 2p2r_A Poly(RC)-binding protei 99.4 7.7E-14 2.6E-18 114.3 6.3 72 364-440 3-74 (76)
21 2axy_A Poly(RC)-binding protei 99.4 6.7E-14 2.3E-18 113.8 5.1 70 127-200 3-72 (73)
22 1wvn_A Poly(RC)-binding protei 99.4 1.3E-13 4.5E-18 114.7 6.9 73 364-441 4-76 (82)
23 1x4n_A FAR upstream element bi 99.4 4.4E-13 1.5E-17 113.9 8.2 74 363-441 12-85 (92)
24 1wvn_A Poly(RC)-binding protei 99.4 2.2E-13 7.5E-18 113.3 5.9 73 127-201 4-76 (82)
25 2p2r_A Poly(RC)-binding protei 99.4 1.7E-13 5.8E-18 112.3 5.1 72 127-200 3-74 (76)
26 1zzk_A Heterogeneous nuclear r 99.4 3.4E-13 1.2E-17 112.1 6.9 72 127-200 5-76 (82)
27 2dgr_A Ring finger and KH doma 99.4 2.2E-13 7.4E-18 113.4 5.7 70 363-440 7-76 (83)
28 1j5k_A Heterogeneous nuclear r 99.4 2.5E-13 8.5E-18 114.7 6.0 74 363-441 11-84 (89)
29 1ec6_A RNA-binding protein NOV 99.4 3E-13 1E-17 113.8 6.4 75 366-442 3-77 (87)
30 1dtj_A RNA-binding neurooncolo 99.4 3.1E-13 1.1E-17 110.6 5.8 73 128-200 2-75 (76)
31 2hh2_A KH-type splicing regula 99.4 1.1E-12 3.7E-17 114.7 7.9 74 367-442 8-81 (107)
32 2opv_A KHSRP protein; KH domai 99.4 1.8E-12 6.1E-17 108.5 8.7 74 364-440 12-85 (85)
33 1j5k_A Heterogeneous nuclear r 99.4 4.8E-13 1.7E-17 113.0 5.2 73 126-200 11-83 (89)
34 1x4m_A FAR upstream element bi 99.3 1.7E-12 5.9E-17 110.7 7.6 76 363-441 12-87 (94)
35 2hh3_A KH-type splicing regula 99.3 1.6E-12 5.5E-17 113.2 7.3 71 366-441 11-81 (106)
36 1tua_A Hypothetical protein AP 99.3 1.6E-12 5.3E-17 124.5 7.7 145 26-200 5-160 (191)
37 1ec6_A RNA-binding protein NOV 99.3 7.6E-13 2.6E-17 111.3 4.6 74 128-201 2-76 (87)
38 1x4n_A FAR upstream element bi 99.3 1.5E-12 5E-17 110.7 5.6 74 126-201 12-85 (92)
39 1we8_A Tudor and KH domain con 99.3 2.7E-12 9.4E-17 111.5 7.4 77 363-442 12-88 (104)
40 2opv_A KHSRP protein; KH domai 99.3 2.6E-12 8.9E-17 107.5 6.9 75 126-200 11-85 (85)
41 2hh2_A KH-type splicing regula 99.3 1.6E-12 5.5E-17 113.6 5.5 72 130-201 8-80 (107)
42 2ctm_A Vigilin; K homology typ 99.3 4.1E-12 1.4E-16 108.5 7.9 76 363-444 14-89 (95)
43 2ctl_A Vigilin; K homology typ 99.3 6.9E-12 2.4E-16 107.5 8.7 73 364-440 15-87 (97)
44 1tua_A Hypothetical protein AP 99.3 5E-12 1.7E-16 121.0 8.2 145 276-440 6-160 (191)
45 1x4m_A FAR upstream element bi 99.3 2E-12 6.9E-17 110.3 4.9 77 125-201 11-87 (94)
46 1vig_A Vigilin; RNA-binding pr 99.3 4.1E-12 1.4E-16 102.6 6.4 67 364-437 3-69 (71)
47 2cte_A Vigilin; K homology typ 99.2 8.1E-12 2.8E-16 106.5 6.8 72 363-441 14-85 (94)
48 2dgr_A Ring finger and KH doma 99.2 3.6E-12 1.2E-16 106.0 4.1 70 126-200 7-76 (83)
49 2hh3_A KH-type splicing regula 99.2 5E-12 1.7E-16 110.1 4.8 71 129-201 11-81 (106)
50 1we8_A Tudor and KH domain con 99.2 9.9E-12 3.4E-16 108.0 5.8 75 127-201 13-87 (104)
51 2ctk_A Vigilin; K homology typ 99.2 3.1E-11 1.1E-15 104.7 6.7 72 364-442 15-86 (104)
52 1vig_A Vigilin; RNA-binding pr 99.1 3.1E-11 1.1E-15 97.4 4.6 67 128-198 4-70 (71)
53 2ctl_A Vigilin; K homology typ 99.1 5.4E-11 1.8E-15 101.9 6.0 72 128-200 16-87 (97)
54 2cte_A Vigilin; K homology typ 99.1 4.4E-11 1.5E-15 101.9 4.7 72 126-201 14-85 (94)
55 2ctm_A Vigilin; K homology typ 99.1 1E-10 3.5E-15 99.8 5.5 73 126-201 14-86 (95)
56 2ctj_A Vigilin; K homology typ 99.1 1.7E-10 5.7E-15 98.4 6.5 71 363-440 14-85 (95)
57 2ctf_A Vigilin; K homology typ 99.0 6.9E-10 2.4E-14 95.8 7.6 68 364-441 25-93 (102)
58 2ctk_A Vigilin; K homology typ 99.0 3.4E-10 1.1E-14 98.2 5.1 69 128-200 16-84 (104)
59 2ctf_A Vigilin; K homology typ 99.0 6.3E-10 2.1E-14 96.1 5.9 67 128-201 26-93 (102)
60 2ctj_A Vigilin; K homology typ 98.8 2E-09 7E-14 91.6 4.7 72 125-200 13-85 (95)
61 2cpq_A FragIle X mental retard 98.8 3.5E-09 1.2E-13 88.8 3.6 72 363-444 12-85 (91)
62 2cpq_A FragIle X mental retard 98.5 6.4E-08 2.2E-12 81.2 4.5 67 126-199 12-80 (91)
63 1k1g_A SF1-BO isoform; splicin 98.4 4.4E-07 1.5E-11 81.6 8.4 79 364-442 5-101 (131)
64 2yqr_A KIAA0907 protein; struc 98.3 2.6E-06 9.1E-11 75.1 9.1 77 364-440 10-99 (119)
65 1k1g_A SF1-BO isoform; splicin 98.3 9.4E-07 3.2E-11 79.5 6.1 73 128-200 6-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.2 1.4E-06 4.7E-11 77.0 5.2 73 128-200 11-99 (119)
67 2bl5_A MGC83862 protein, quaki 97.9 1.3E-05 4.5E-10 72.5 5.6 74 366-439 2-100 (140)
68 2bl5_A MGC83862 protein, quaki 97.8 8.3E-06 2.8E-10 73.8 2.9 72 129-200 2-101 (140)
69 3u1k_A Polyribonucleotide nucl 97.6 5.1E-05 1.8E-09 85.0 6.9 90 336-438 539-629 (630)
70 3u1k_A Polyribonucleotide nucl 97.6 4.5E-05 1.5E-09 85.5 5.3 92 99-198 537-629 (630)
71 3v69_A Protein filia; RNA-bind 97.6 0.00015 5.3E-09 64.4 7.6 67 367-439 57-123 (140)
72 2cxc_A NUSA; transcription ter 97.5 3.7E-05 1.3E-09 70.0 2.5 103 25-165 36-139 (144)
73 3v69_A Protein filia; RNA-bind 96.9 0.00096 3.3E-08 59.3 5.1 68 130-200 57-124 (140)
74 2cxc_A NUSA; transcription ter 96.9 0.00031 1.1E-08 63.9 1.9 102 275-403 37-140 (144)
75 4aid_A Polyribonucleotide nucl 96.8 0.00071 2.4E-08 76.7 4.8 94 336-442 542-636 (726)
76 4aid_A Polyribonucleotide nucl 96.7 0.00072 2.5E-08 76.7 3.6 94 99-200 540-634 (726)
77 2asb_A Transcription elongatio 95.5 0.004 1.4E-07 61.4 1.7 95 34-167 126-222 (251)
78 1k0r_A NUSA; two component arr 95.4 0.0048 1.6E-07 64.2 2.0 95 34-167 249-345 (366)
79 2asb_A Transcription elongatio 94.3 0.039 1.3E-06 54.4 5.0 96 283-406 126-224 (251)
80 1k0r_A NUSA; two component arr 93.8 0.079 2.7E-06 55.1 6.4 96 283-406 249-347 (366)
81 1hh2_P NUSA, N utilization sub 93.5 0.028 9.5E-07 58.2 2.4 94 34-166 245-340 (344)
82 1e3p_A Guanosine pentaphosphat 92.9 0.023 7.8E-07 64.9 0.7 91 99-198 569-660 (757)
83 3cdi_A Polynucleotide phosphor 92.9 0.034 1.2E-06 63.3 2.0 93 99-199 530-623 (723)
84 1e3p_A Guanosine pentaphosphat 92.1 0.019 6.5E-07 65.6 -1.3 87 336-436 571-658 (757)
85 3cdi_A Polynucleotide phosphor 91.0 0.07 2.4E-06 60.7 1.9 65 364-439 558-623 (723)
86 1hh2_P NUSA, N utilization sub 90.5 0.23 8E-06 51.3 5.0 95 282-404 244-341 (344)
87 1wh9_A 40S ribosomal protein S 62.9 2.8 9.7E-05 34.7 1.6 29 26-54 36-64 (92)
88 2pt7_G HP1451, hypothetical pr 60.8 3.9 0.00013 37.1 2.3 31 27-57 35-65 (152)
89 2pt7_G HP1451, hypothetical pr 45.1 9 0.00031 34.7 2.0 67 367-442 34-100 (152)
90 1wh9_A 40S ribosomal protein S 33.1 14 0.00049 30.4 1.2 27 367-393 36-62 (92)
91 3u5c_D RP13, YS3, 40S ribosoma 31.6 17 0.00057 35.4 1.6 29 27-55 46-74 (240)
92 3j20_C 30S ribosomal protein S 30.7 19 0.00067 34.3 1.9 28 27-54 42-69 (210)
93 2ba0_A Archeal exosome RNA bin 29.9 75 0.0026 30.5 6.0 56 368-434 138-193 (229)
94 2xzm_C KH domain containing pr 29.5 22 0.00077 34.6 2.1 30 26-55 48-77 (243)
95 3iz6_B 40S ribosomal protein S 27.8 17 0.00059 35.0 1.0 30 26-55 45-74 (227)
96 2kl8_A OR15; structural genomi 27.7 81 0.0028 24.0 4.4 29 413-441 39-67 (85)
97 3gku_A Probable RNA-binding pr 25.5 20 0.00067 34.6 0.9 33 27-59 94-126 (225)
98 3r8n_C 30S ribosomal protein S 24.2 19 0.00065 34.3 0.5 28 27-54 63-90 (206)
99 2zkq_c 40S ribosomal protein S 22.9 21 0.00071 34.8 0.5 30 26-55 45-74 (243)
100 2z0s_A Probable exosome comple 22.9 1.7E+02 0.0059 27.9 7.1 58 368-436 150-208 (235)
101 3iev_A GTP-binding protein ERA 22.4 35 0.0012 34.0 2.1 37 365-401 239-284 (308)
102 3i1m_C 30S ribosomal protein S 22.0 22 0.00074 34.5 0.4 28 27-54 64-91 (233)
103 2vqe_C 30S ribosomal protein S 21.0 32 0.0011 33.5 1.3 28 27-54 64-91 (239)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=3.6e-25 Score=211.90 Aligned_cols=161 Identities=20% Similarity=0.385 Sum_probs=126.6
Q ss_pred CCcEEEEEEeccCccceeecCCChHHHHHHHHhCceEEEeCC---CCCCCceEEEEccCcchhhhhhhccccccccCCCc
Q 007603 22 DDVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG---FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEV 98 (596)
Q Consensus 22 ~~~~~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~V~~~---~~g~~eRvi~I~G~~e~~~~a~~~~~~~~~e~~~~ 98 (596)
+++++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|+.+++.+|.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~------------- 69 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVH------------- 69 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHH-------------
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHH-------------
Confidence 678999999999999999999999999999999999999753 4678899999999877644332
Q ss_pred cHHHHHHHHHHHHHHhhhhcc-----------CCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCC
Q 007603 99 SSTQEAVIRVFERMWEVEAEV-----------EGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (596)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~~-----------~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~ 167 (596)
..+.+.+.+..... ......+...+++|+||..++|+||||+|++|++|+++|||+|+|.+.
T Consensus 70 -------~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 70 -------GFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp -------HHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred -------HHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 22222222111000 000112335789999999999999999999999999999999999885
Q ss_pred CCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhccC
Q 007603 168 PACAAIDDQLIQITGATLAVKKALVAVTTCLQHLS 202 (596)
Q Consensus 168 p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~~ 202 (596)
+.++...+|+|+|+|+.++|.+|+.+|.++|++++
T Consensus 143 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 143 PDGINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp C----CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 44566788999999999999999999999998854
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=202.37 Aligned_cols=154 Identities=20% Similarity=0.312 Sum_probs=126.8
Q ss_pred cEEEEEEeccCccceeecCCChHHHHHHHHhCceEEEeCC-CCCCCceEEEEccCcchhhhhhhccccccccCCCccHHH
Q 007603 24 VVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG-FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (596)
Q Consensus 24 ~~~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~V~~~-~~g~~eRvi~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~ 102 (596)
.-+++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|+.++ +.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~--------------------v~ 61 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA--------------------QF 61 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH--------------------HH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH--------------------HH
Confidence 3589999999999999999999999999999999999875 57889999999998765 33
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCC-cEEEEe
Q 007603 103 EAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDD-QLIQIT 181 (596)
Q Consensus 103 ~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~d-RiV~I~ 181 (596)
.|...+...+.+.... .......++++|+||...+|+||||+|++|++|+++|||+|.|.++ ..+...+ +.|+|+
T Consensus 62 ~A~~~I~~~~~e~~~~---~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~~~~~~~v~I~ 137 (163)
T 3krm_A 62 KAQGRIYGKLKEENFF---GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPDENDQVIVKII 137 (163)
T ss_dssp HHHHHHHHHHHHTTSS---CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCCTTSEEEEEEE
T ss_pred HHHHHHHHHHhccccc---ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCCCCCceEEEEE
Confidence 4555555555443211 1122346788999999999999999999999999999999999875 3334444 489999
Q ss_pred ecHHHHHHHHHHHHHHHhcc
Q 007603 182 GATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 182 G~~e~V~~A~~~I~~~L~e~ 201 (596)
|++++|.+|+.+|.+++++.
T Consensus 138 G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 138 GHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp ECHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=202.34 Aligned_cols=155 Identities=18% Similarity=0.346 Sum_probs=126.9
Q ss_pred CcEEEEEEeccCccceeecCCChHHHHHHHHhCceEEEeCCCCCCCceEEEEccCcchhhhhhhccccccccCCCccHHH
Q 007603 23 DVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (596)
Q Consensus 23 ~~~~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~V~~~~~g~~eRvi~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~ 102 (596)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|++. ++.+|+|+|+|+.+++ .
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v--------------------~ 60 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAI--------------------F 60 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHH--------------------H
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHH--------------------H
Confidence 46899999999999999999999999999999999999875 5779999999986653 2
Q ss_pred HHHHHHHHHHHhhhhcc-C-CCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEE
Q 007603 103 EAVIRVFERMWEVEAEV-E-GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQI 180 (596)
Q Consensus 103 ~Al~~i~~~i~~~~~~~-~-~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I 180 (596)
.|...+.+.+.+..... . +.......++++|+||...+|+||||+|++|++|+++|||+|+|.++ ..+...++.|+|
T Consensus 61 ~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~~~~~~~v~I 139 (160)
T 2jzx_A 61 KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLPNSTERAITI 139 (160)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CSTTCCEEEEEE
T ss_pred HHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCCCCCceEEEE
Confidence 33444444443321110 0 00122346899999999999999999999999999999999999874 456778999999
Q ss_pred eecHHHHHHHHHHHHHHHhc
Q 007603 181 TGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 181 ~G~~e~V~~A~~~I~~~L~e 200 (596)
+|++++|.+|+.+|.+++.+
T Consensus 140 ~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 140 AGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EECHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999876
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=4.2e-24 Score=203.77 Aligned_cols=159 Identities=21% Similarity=0.325 Sum_probs=123.3
Q ss_pred CcEEEEEEeccCccceeecCCChHHHHHHHHhCceEEEeCCCCCCCceEEEEccCcchhhhhhhccccccccCCCccHHH
Q 007603 23 DVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (596)
Q Consensus 23 ~~~~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~V~~~~~g~~eRvi~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~ 102 (596)
+..+++|+||.+++|.||||+|++|++|+++|||+|+|.+..+++.+|+|+|+|+.+++.+ |.
T Consensus 1 g~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~-----------------A~ 63 (174)
T 1j4w_A 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQH-----------------AA 63 (174)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHH-----------------HH
T ss_pred CCeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHH-----------------HH
Confidence 4678999999999999999999999999999999999987666788999999999776433 33
Q ss_pred HHHHHHHHHHHhhhhccC------------C--CCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCC-
Q 007603 103 EAVIRVFERMWEVEAEVE------------G--DGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP- 167 (596)
Q Consensus 103 ~Al~~i~~~i~~~~~~~~------------~--~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~- 167 (596)
+.+..++........... . .......++++|+||...+|+||||+|++|++|+++|||+|+|.+.
T Consensus 64 ~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~ 143 (174)
T 1j4w_A 64 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP 143 (174)
T ss_dssp HHHHHHHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC
T ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC
Confidence 333333332211000000 0 0011235789999999999999999999999999999999999885
Q ss_pred CCCCCCCCcEEEEeecHHHHHHHHHHHHHHH
Q 007603 168 PACAAIDDQLIQITGATLAVKKALVAVTTCL 198 (596)
Q Consensus 168 p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L 198 (596)
+.+....+++|+|+|++++|.+|+.+|.++|
T Consensus 144 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 144 PPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp TTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 3455678899999999999999999998864
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.89 E-value=6.5e-24 Score=200.20 Aligned_cols=154 Identities=15% Similarity=0.216 Sum_probs=121.8
Q ss_pred EEEEEEeccCccceeecCCChHHHHHHHHhCceEEEeCC--CCCCCceEEEEccCcchhhhhhhccccccccCCCccHHH
Q 007603 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG--FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (596)
Q Consensus 25 ~~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~V~~~--~~g~~eRvi~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~ 102 (596)
++++|+||.+++|.||||+|++||+|+++|||+|+|.+. .++..+|+|+|+|+.+++ .
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v--------------------~ 61 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKV--------------------Q 61 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHH--------------------H
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHH--------------------H
Confidence 689999999999999999999999999999999999653 356789999999977663 2
Q ss_pred HHHHHHHHHHHhhhhcc-CC-CCC-CCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEE
Q 007603 103 EAVIRVFERMWEVEAEV-EG-DGD-GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQ 179 (596)
Q Consensus 103 ~Al~~i~~~i~~~~~~~-~~-~~~-~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~ 179 (596)
.|...+.+.+.+..... .. ... ....++++|+||...+|+||||+|++|++|+++|||+|.|.+. .+...++.|+
T Consensus 62 ~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~--~~~~~~~~v~ 139 (164)
T 2jvz_A 62 QACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD--DGTGPEKIAH 139 (164)
T ss_dssp HHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCC--CTTSSEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCC--CCCCCcEEEE
Confidence 33444444433221100 00 001 1113568899999999999999999999999999999999873 3455689999
Q ss_pred EeecHHHHHHHHHHHHHHHhc
Q 007603 180 ITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 180 I~G~~e~V~~A~~~I~~~L~e 200 (596)
|+|++++|.+|+.+|.+++++
T Consensus 140 I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 140 IMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp EESCHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999976
No 6
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.89 E-value=1.9e-23 Score=199.90 Aligned_cols=162 Identities=21% Similarity=0.338 Sum_probs=127.8
Q ss_pred CcceEEEEEeccccccccccccchhhhhhhhccCeeEEEeCC---CCCCCccEEEEEecCCCCCCCchHHHHHHHHHhhh
Q 007603 271 KQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP---LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARS 347 (596)
Q Consensus 271 ~~~~~~~l~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~---~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~~i 347 (596)
..+++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|.|+|+|+. ..+..|..++.+.+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~------~~v~~A~~~I~~~~ 76 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI------EALNAVHGFIAEKI 76 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECH------HHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCH------HHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999853 356789999999973 44566666666665
Q ss_pred hhccccCC-------CCC--CCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEE
Q 007603 348 VEVEGQQG-------FSS--GENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVI 418 (596)
Q Consensus 348 ~e~~~~~g-------~~~--g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V 418 (596)
.+...... +++ ........+.+|.||.+++|+||||+|++|++|++.|||+|+|.+..+. ....++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~---~~~~~~~v 153 (178)
T 2anr_A 77 REMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG---INLQNRVV 153 (178)
T ss_dssp TCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEE
T ss_pred hccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC---CCCCceEE
Confidence 43211000 000 0011235789999999999999999999999999999999999875432 34678999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhc
Q 007603 419 QISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 419 ~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
+|+|++++|++|+.+|.++|++.
T Consensus 154 ~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 154 TVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSC
T ss_pred EEEcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
No 7
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=194.80 Aligned_cols=156 Identities=21% Similarity=0.399 Sum_probs=127.5
Q ss_pred cceEEEEEeccccccccccccchhhhhhhhccCeeEEEeCCCCCCCccEEEEEecCCCCCCCchHHHHHHHHHhhhhhcc
Q 007603 272 QEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVE 351 (596)
Q Consensus 272 ~~~~~~l~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~~i~e~~ 351 (596)
..++++|+||.+++|.|||++|++|++|+++|||+|+|.+. ++.+|.|+|+|+. ..+..|...+.+.+.+..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~------~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT------NAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH------HHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH------HHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999965 4678999999983 456677777776665432
Q ss_pred ccCCCCC-CCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHH
Q 007603 352 GQQGFSS-GENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNA 430 (596)
Q Consensus 352 ~~~g~~~-g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A 430 (596)
. ...+. ........+.+|.||.+++|+||||+|++|++|++.|||+|+|.+. ..| ..+++.|+|+|++++|+.|
T Consensus 75 ~-~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~---~~~~~~v~I~G~~~~v~~A 149 (160)
T 2jzx_A 75 S-SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLP---NSTERAITIAGIPQSIIEC 149 (160)
T ss_dssp T-SCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CST---TCCEEEEEEEECHHHHHHH
T ss_pred c-ccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCC---CCCceEEEEEcCHHHHHHH
Confidence 1 11111 1112346899999999999999999999999999999999999763 233 4678999999999999999
Q ss_pred HHHHHHHHhh
Q 007603 431 LSEVVGRLRH 440 (596)
Q Consensus 431 ~~~I~~~Lr~ 440 (596)
+.+|.+.|.+
T Consensus 150 ~~~I~~~i~e 159 (160)
T 2jzx_A 150 VKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998876
No 8
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=7.6e-23 Score=192.86 Aligned_cols=153 Identities=21% Similarity=0.320 Sum_probs=127.7
Q ss_pred eEEEEEeccccccccccccchhhhhhhhccCeeEEEeCC-CCCCCccEEEEEecCCCCCCCchHHHHHHHHHhhhhhccc
Q 007603 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP-LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (596)
Q Consensus 274 ~~~~l~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~-~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~~i~e~~~ 352 (596)
.+++|+||.+++|.|||++|++|++|+++|||+|+|.+. .+++.+|.|+|+|+. ..+..|..++.+.+.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~------e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP------EAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH------HHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH------HHHHHHHHHHHHHHhcccc
Confidence 478999999999999999999999999999999999975 567889999999973 5566777777777655321
Q ss_pred cCCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHH
Q 007603 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALS 432 (596)
Q Consensus 353 ~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~ 432 (596)
. ........+.+|.||.+++|+|||++|++|++|++.|||+|+|++.. .|. ..+++.|+|+|++++|+.|+.
T Consensus 77 ~-----~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~-~~~--~~~~~~v~I~G~~~~v~~A~~ 148 (163)
T 3krm_A 77 F-----GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPD--ENDQVIVKIIGHFYASQMAQR 148 (163)
T ss_dssp S-----CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTC-CCC--TTSEEEEEEEECHHHHHHHHH
T ss_pred c-----ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCC-CCC--CCCceEEEEEeCHHHHHHHHH
Confidence 1 11223567889999999999999999999999999999999997643 232 344568999999999999999
Q ss_pred HHHHHHhh
Q 007603 433 EVVGRLRH 440 (596)
Q Consensus 433 ~I~~~Lr~ 440 (596)
+|.+.|++
T Consensus 149 ~I~~~i~~ 156 (163)
T 3krm_A 149 KIRDILAQ 156 (163)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999886
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=1.6e-22 Score=192.88 Aligned_cols=158 Identities=19% Similarity=0.312 Sum_probs=122.9
Q ss_pred ceEEEEEeccccccccccccchhhhhhhhccCeeEEEeCCCCCCCccEEEEEecCCCCCCCchHHHHHHHHHhhhhhccc
Q 007603 273 EVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (596)
Q Consensus 273 ~~~~~l~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~~i~e~~~ 352 (596)
..+++|.||.+++|.||||+|++|++|+++|||+|+|.+......+|.|+|+|+. ..+..|...|.+.+.+...
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~------~~v~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPP------DRAQHAAEIITDLLRSVQA 75 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECH------HHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCH------HHHHHHHHHHHHHHHhccc
Confidence 3578999999999999999999999999999999999876566788999999983 4455666666555543210
Q ss_pred cC-C--------CCCC------CCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcE
Q 007603 353 QQ-G--------FSSG------ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVV 417 (596)
Q Consensus 353 ~~-g--------~~~g------~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~ 417 (596)
.. + +..+ .......+.+|.||.+++|+||||+|++|++|++.|||+|+|.+.. +.+...+++.
T Consensus 76 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~~~~~~ 153 (174)
T 1j4w_A 76 GNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNADPNMKL 153 (174)
T ss_dssp ----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSCTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCCCCceE
Confidence 00 0 0000 0011346889999999999999999999999999999999998743 2234577899
Q ss_pred EEEcCCHHHHHHHHHHHHHHH
Q 007603 418 IQISGEYKNVQNALSEVVGRL 438 (596)
Q Consensus 418 V~I~G~~~~V~~A~~~I~~~L 438 (596)
|+|+|++++|+.|+.+|.++|
T Consensus 154 v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 154 FTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEECCHHHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHHhC
Confidence 999999999999999998864
No 10
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.88 E-value=4.2e-22 Score=208.43 Aligned_cols=231 Identities=16% Similarity=0.093 Sum_probs=163.4
Q ss_pred CCCceEEEEEeccceeeeeeecCc--hhhhhhccccccEEEecCCC---CCCCCCCcEEEEeecHHHHHHHHHHHHHHHh
Q 007603 125 GDDVAYCGLLANTTKIGVVVGKGG--RNVTRMRIESGAKIVMLPPP---ACAAIDDQLIQITGATLAVKKALVAVTTCLQ 199 (596)
Q Consensus 125 ~~~~vt~rllVp~~~vG~IIGKgG--~~Ik~I~~esGa~I~I~~~p---~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~ 199 (596)
....+|+.+-||..+++.||||+| ++|++|+++|||+|+|.... ..+......|+|+|..++|++|..+|.+.+-
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~P 105 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCH 105 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCE
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCC
Confidence 355899999999999999999999 99999999999999997631 1122456789999999999999999887431
Q ss_pred ccCCCCCCCcccCCCccccccCCCCCCCCCcCCCcCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccCCCcceEEEEE
Q 007603 200 HLSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADRDHPGLDKKGRKQEVALRML 279 (596)
Q Consensus 200 e~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~ya~~~~p~~~~~~r~~p~~~~~~~~~~~~~~l~ 279 (596)
+++.+.
T Consensus 106 --------------------------------------------------------------------------l~i~~e 111 (376)
T 3n89_A 106 --------------------------------------------------------------------------FTVFMA 111 (376)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred --------------------------------------------------------------------------ceEEEE
Confidence 122233
Q ss_pred eccccccccccccchhhhhhhhccCeeEEEeCCCC--CCCccEEEEEecCCCCCCCchHHHHHHHHHhhhhhccccCCCC
Q 007603 280 FSGWTASGIIGKRGAIVRSLQNASGALISFAAPLT--KSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFS 357 (596)
Q Consensus 280 VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~--~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~~i~e~~~~~g~~ 357 (596)
+|...+.. ..-+..|.+ ++.++++|.|..... +.....|+|+|.+ .....+.+|+..+.+.+.+...
T Consensus 112 lp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~---~nv~~akeA~~~Ll~~l~~~e~----- 180 (376)
T 3n89_A 112 LSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITARE---KNQHELIEAAKRLNEILFRESP----- 180 (376)
T ss_dssp CTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEG---GGHHHHHHHHHHHHHHHCC--C-----
T ss_pred ccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcCh---hhHHHHHHHHHHHHHHHHhhhc-----
Confidence 33322221 111234444 577999999864321 1235679999984 3334566777777777643210
Q ss_pred CCCCCCCceEEEEEeccccccccccCCC--chhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHH
Q 007603 358 SGENKGDAVAVSILVGADFVGCLTGSGS--SAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVV 435 (596)
Q Consensus 358 ~g~~~~~~~t~~l~VP~~~vG~IIGkgG--~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~ 435 (596)
.....++.+|.|+..+|.+|||++| ..|++|+++|||+|.+++.++... ...+...|+|+|+.++|+.|+++|.
T Consensus 181 ---~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d-~~~~~~~ItItGs~e~V~~Ark~I~ 256 (376)
T 3n89_A 181 ---APENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE-TRGNIYEIKVVGNIDNVLKARRYIM 256 (376)
T ss_dssp ---CCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHH
T ss_pred ---ccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc-ccCCceEEEEEeCHHHHHHHHHHHH
Confidence 1135689999999999999999999 567999999999999987544110 1134679999999999999999999
Q ss_pred HHHh-hcccc
Q 007603 436 GRLR-HNLKS 444 (596)
Q Consensus 436 ~~Lr-~~~~~ 444 (596)
+.|= ..+|+
T Consensus 257 ~lLPv~l~Fd 266 (376)
T 3n89_A 257 DLLPISMCFN 266 (376)
T ss_dssp HTSEEEEEEE
T ss_pred hhCCEEEEEe
Confidence 9776 33444
No 11
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=188.52 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=125.0
Q ss_pred eEEEEEeccccccccccccchhhhhhhhccCeeEEEeCC--CCCCCccEEEEEecCCCCCCCchHHHHHHHHHhhhhhcc
Q 007603 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP--LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVE 351 (596)
Q Consensus 274 ~~~~l~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~--~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~~i~e~~ 351 (596)
++++|.||.+++|.|||++|++||+|+++|||+|+|.+. .+...+|.|+|+|+. ..+..|...+.+.+.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~------~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP------YKVQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH------HHHHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH------HHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999999999999999999753 245678999999973 456677777777665432
Q ss_pred ccCCCCCCCC--CCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHH
Q 007603 352 GQQGFSSGEN--KGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQN 429 (596)
Q Consensus 352 ~~~g~~~g~~--~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~ 429 (596)
..++.+... .....+.+|.||.+++|+||||+|++|++|++.|||+|+|++..+ ...++.|+|+|++++|+.
T Consensus 76 -~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-----~~~~~~v~I~G~~~~v~~ 149 (164)
T 2jvz_A 76 -QGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEH 149 (164)
T ss_dssp -SCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----TSSEEEEEEESCHHHHHH
T ss_pred -CCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----CCCcEEEEEEcCHHHHHH
Confidence 112211100 011356889999999999999999999999999999999987532 355799999999999999
Q ss_pred HHHHHHHHHhhc
Q 007603 430 ALSEVVGRLRHN 441 (596)
Q Consensus 430 A~~~I~~~Lr~~ 441 (596)
|+.+|.+.|++.
T Consensus 150 A~~~I~~~i~~~ 161 (164)
T 2jvz_A 150 AARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999998863
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.80 E-value=3e-19 Score=186.82 Aligned_cols=295 Identities=11% Similarity=0.096 Sum_probs=187.5
Q ss_pred CCCCCcEEEEEEeccCccceeecCCC--hHHHHHHHHhCceEEEeCCC-----CCCCceEEEEccCcchhhhhhhccccc
Q 007603 19 NLPDDVVSFRLVCPTPVVGGLIGRSG--SIISSIRRDTKCRIHCEGGF-----PGSDHRVILVVGSGSIDRRIMFCENDV 91 (596)
Q Consensus 19 ~~~~~~~~~rilvP~~~vg~IIGk~G--~~Ik~Ir~eTga~I~V~~~~-----~g~~eRvi~I~G~~e~~~~a~~~~~~~ 91 (596)
..-...+++.+-||..+++.||||+| ++|++|++||||+|+|++.. +......|+|+|..+++++
T Consensus 24 e~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~-------- 95 (376)
T 3n89_A 24 EINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDR-------- 95 (376)
T ss_dssp CCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHH--------
T ss_pred EecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHH--------
Confidence 44467899999999999999999999 99999999999999998754 1134578999999988543
Q ss_pred cccCCCccHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCC
Q 007603 92 VVEGGEVSSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACA 171 (596)
Q Consensus 92 ~~e~~~~~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~ 171 (596)
|..+|.. . ..+++.+-+|...++. ..-+..|.+ ++..|++|.+...+...
T Consensus 96 ---------AR~~I~~-------l-----------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~ 145 (376)
T 3n89_A 96 ---------ARMLMRR-------N-----------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN 145 (376)
T ss_dssp ---------HHHHHHH-------S-----------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC---
T ss_pred ---------HHHHHHh-------c-----------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc
Confidence 4343332 1 1455555566543332 122345655 67899999985521111
Q ss_pred CCCCcEEEEeecHHHHHHHHHHHHHHHhccCCCCCCCcccCCCccccccCCCCCCCCCcCCCcCCCCCCCCCCCCCCCcc
Q 007603 172 AIDDQLIQITGATLAVKKALVAVTTCLQHLSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNASEF 251 (596)
Q Consensus 172 ~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~ya~~~ 251 (596)
+...-.|+|+|...+|.+|..++..+++......
T Consensus 146 ~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e---------------------------------------------- 179 (376)
T 3n89_A 146 GIVTTYLRITAREKNQHELIEAAKRLNEILFRES---------------------------------------------- 179 (376)
T ss_dssp --CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred CCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhh----------------------------------------------
Confidence 1235679999998777766666555554311000
Q ss_pred cCCCCCCCCCCCCCCccCCCcceEEEEEeccccccccccccc--hhhhhhhhccCeeEEEeCCCC----CCCccEEEEEe
Q 007603 252 HSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRG--AIVRSLQNASGALISFAAPLT----KSGERVVTISA 325 (596)
Q Consensus 252 ~p~~~~~~r~~p~~~~~~~~~~~~~~l~VP~~~vg~IIGk~G--~~Ik~I~~~tGa~I~i~~~~~----~~~er~v~IsG 325 (596)
......++..|.|+..+|..|||++| ..|++|+++||++|.|++... ......|+|+|
T Consensus 180 ----------------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItG 243 (376)
T 3n89_A 180 ----------------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVG 243 (376)
T ss_dssp ----------------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEES
T ss_pred ----------------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEe
Confidence 00124568889999999999999998 566999999999999985321 12356899999
Q ss_pred cCCCCCCCchHHHHHHHHHhhhhhccccCCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCC
Q 007603 326 LEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGE 405 (596)
Q Consensus 326 ~e~p~~~~~~a~~Av~~i~~~i~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~ 405 (596)
++ ..+.+|...|.+.+ .+...+.++.+..-.-.-.--..|-.+.++.++-|.|.+..
T Consensus 244 s~------e~V~~Ark~I~~lL-----------------Pv~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 300 (376)
T 3n89_A 244 NI------DNVLKARRYIMDLL-----------------PISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTPSV 300 (376)
T ss_dssp CH------HHHHHHHHHHHHTS-----------------EEEEEEEEEGGGBC--------CBEEEECTTSCEEEEEEEE
T ss_pred CH------HHHHHHHHHHHhhC-----------------CEEEEEecCCcccccccccchhHHHHHHHhcCeEEEEeecC
Confidence 85 45556655555543 35667776665433333444445566778899999998644
Q ss_pred cccccCCCC---CcEEEEcC---CHHHHHHHHHHHHH
Q 007603 406 QVLGCAAQN---DVVIQISG---EYKNVQNALSEVVG 436 (596)
Q Consensus 406 ~~P~~~~~~---er~V~I~G---~~~~V~~A~~~I~~ 436 (596)
.-|.--.++ -..|.|++ +..++..|.+.++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~s~e~n~~~~y~~~~~~l~ 337 (376)
T 3n89_A 301 YEPADLLSGEVPLNCASLRSKEFNIKKLYTAYQKVLS 337 (376)
T ss_dssp ECCSSSSCCCEEEEEEEEEEEGGGHHHHHHHHHHHBC
T ss_pred CCchhhcccccccceEEEEEEeccHHHHHHHHHHHhC
Confidence 322100111 13455555 45566666666543
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.71 E-value=2.8e-17 Score=151.57 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=101.6
Q ss_pred ceEEEEEeccccccccccccchhhhhhhhccCeeEEEeCCCCCCCccEEEEEecCCCCCCCchHHHHHHHHHhhhhhccc
Q 007603 273 EVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (596)
Q Consensus 273 ~~~~~l~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~~i~e~~~ 352 (596)
.++.++.||.+.+|.+||++|++|+.|++++| |.+..... +...+.+.|. +|+ ++..+.. +.+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~--~~~~~i~~~~-------~p~--~v~~~~~-~l~--- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDE--DTCTFHIYGE-------DQD--AVKKARS-FLE--- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEET--TTTEEEEEES-------SHH--HHHHHHH-HHC---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCC--CchheeeccC-------CHH--HHHHHHH-hhh---
Confidence 35788999999999999999999999999999 44432211 2235666664 222 2222211 111
Q ss_pred cCCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCC-eEEEeCCCcccccCCCCC--cEEEEcCCHHHHHH
Q 007603 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGT-DIKLVGGEQVLGCAAQND--VVIQISGEYKNVQN 429 (596)
Q Consensus 353 ~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa-~I~I~~~~~~P~~~~~~e--r~V~I~G~~~~V~~ 429 (596)
....++.||.+++|++|||+|++|+.|++.||| +|+|.+.++... ..++ +.|+|+|++++|+.
T Consensus 66 ------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~ 131 (144)
T 2qnd_A 66 ------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIAN 131 (144)
T ss_dssp ------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHH
T ss_pred ------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHH
Confidence 114899999999999999999999999999997 999987544211 1233 35899999999999
Q ss_pred HHHHHHHHHhh
Q 007603 430 ALSEVVGRLRH 440 (596)
Q Consensus 430 A~~~I~~~Lr~ 440 (596)
|+.+|..+|..
T Consensus 132 Ak~li~~~l~~ 142 (144)
T 2qnd_A 132 ATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.67 E-value=5.4e-17 Score=149.66 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=100.2
Q ss_pred cEEEEEEeccCccceeecCCChHHHHHHHHhCceEEEeCCCCCCCceEEEEccCcchhhhhhhccccccccCCCccHHHH
Q 007603 24 VVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQE 103 (596)
Q Consensus 24 ~~~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~V~~~~~g~~eRvi~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~~ 103 (596)
.++.+++||.+.+|++||++|++|++|++++| |++-... ..+++.+...+.++.+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~v---------------------- 57 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDAV---------------------- 57 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHHH----------------------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHHH----------------------
Confidence 46789999999999999999999999999999 4442221 2245555444444332
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhcccccc-EEEecCCC-CCCCCCCc--EEE
Q 007603 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGA-KIVMLPPP-ACAAIDDQ--LIQ 179 (596)
Q Consensus 104 Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa-~I~I~~~p-~~~~~~dR--iV~ 179 (596)
.++.. +.+ ...+++.||..++|++|||+|++|+.|++.||| +|.|.... ......++ .|+
T Consensus 58 --~~~~~-~l~-------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vt 121 (144)
T 2qnd_A 58 --KKARS-FLE-------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFV 121 (144)
T ss_dssp --HHHHH-HHC-------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEE
T ss_pred --HHHHH-hhh-------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEE
Confidence 11111 111 113789999999999999999999999999997 99998741 11122344 489
Q ss_pred EeecHHHHHHHHHHHHHHHhc
Q 007603 180 ITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 180 I~G~~e~V~~A~~~I~~~L~e 200 (596)
|+|++++|++|..+|..+|+.
T Consensus 122 I~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 122 FVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEHHHHHHHHHHHHHHHHT
T ss_pred EEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999975
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.54 E-value=8.1e-15 Score=143.72 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=99.9
Q ss_pred cEEEEEEeccCccceeecCCChHHHHHHHHhCceEEEeCCCCCCCceEEEEccCcchhhhhhhccccccccCCCccHHHH
Q 007603 24 VVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQE 103 (596)
Q Consensus 24 ~~~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~V~~~~~g~~eRvi~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~~ 103 (596)
.-+.++.||.+++|.|||++|++|+.|+++|||+|+++. .++.|.|.++.... .....+.
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~---------------d~~~i~k 92 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETE---------------DPLAVWK 92 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCC---------------SHHHHHH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCC---------------CHHHHHH
Confidence 345689999999999999999999999999999999963 24678888764110 0111222
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCceEEE-EEe-----cc------ceeeeeeecCchhhhhhccccccEEEecCCCCCC
Q 007603 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCG-LLA-----NT------TKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACA 171 (596)
Q Consensus 104 Al~~i~~~i~~~~~~~~~~~~~~~~vt~r-llV-----p~------~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~ 171 (596)
|...|..-+.....+....-..+ ...+. +-+ +. ..+|+||||+|++|+.|++.|||+|.|.
T Consensus 93 A~~~I~~i~rg~~~e~g~~ll~d-d~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------ 165 (219)
T 2e3u_A 93 ARDIVLAIGRGFSPERAFRLLNE-GEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------ 165 (219)
T ss_dssp HHHHHHHHHTTCCHHHHGGGGST-TCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE------
T ss_pred HHHHHHHHhccCCccccceeccC-CccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC------
Confidence 22222222100000000000000 11111 222 22 2689999999999999999999999994
Q ss_pred CCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 172 AIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 172 ~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
++.|.|.|+.++|+.|..+|.+++.+.
T Consensus 166 ---~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 166 ---GKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp ---TTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ---CeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 367999999999999999999999763
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.50 E-value=4.7e-14 Score=138.31 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=104.5
Q ss_pred EEEEEeccccccccccccchhhhhhhhccCeeEEEeCCCCCCCccEEEEEecCCCCCCCchHHHHHHHHHhhhhhccccC
Q 007603 275 ALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQ 354 (596)
Q Consensus 275 ~~~l~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~~i~e~~~~~ 354 (596)
...+.||.+.+|.|||++|.+|+.|+++||++|.++.. ++.|+|.++....+ ...++.|...|...+....++.
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d-~~~i~kA~~~I~~i~rg~~~e~ 108 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETED-PLAVWKARDIVLAIGRGFSPER 108 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCS-HHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCC-HHHHHHHHHHHHHHhccCCccc
Confidence 55789999999999999999999999999999999832 46799998731111 1345556555544331111110
Q ss_pred CCCCCCCCCCceEEEEEec-----------cccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCC
Q 007603 355 GFSSGENKGDAVAVSILVG-----------ADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE 423 (596)
Q Consensus 355 g~~~g~~~~~~~t~~l~VP-----------~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~ 423 (596)
+... . ........+.++ ...+|+||||+|++|+.|++.|||+|.|.. +.|.|.|+
T Consensus 109 g~~l-l-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------------~~v~i~G~ 174 (219)
T 2e3u_A 109 AFRL-L-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------------KTVAIIGN 174 (219)
T ss_dssp HGGG-G-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------------TEEEEEEC
T ss_pred ccee-c-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------------eEEEEEeC
Confidence 0000 0 011122233333 236999999999999999999999999963 56999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007603 424 YKNVQNALSEVVGRLRH 440 (596)
Q Consensus 424 ~~~V~~A~~~I~~~Lr~ 440 (596)
+++++.|+.+|...|..
T Consensus 175 ~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999865
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.47 E-value=4.7e-14 Score=114.72 Aligned_cols=71 Identities=18% Similarity=0.421 Sum_probs=65.3
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (596)
+..++.+|+||.+++|+||||+|++|++|+++|||+|+|.+. +..+|.|+|+|+++++.+|+.+|.++|++
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999863 24589999999999999999999999986
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.45 E-value=1.4e-13 Score=114.43 Aligned_cols=73 Identities=19% Similarity=0.390 Sum_probs=66.1
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007603 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|++.. .+.+++.|+|+|++++|+.|+.+|.+++++.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~-----~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL-----EGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTT-----SCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCC-----CCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 568999999999999999999999999999999999997632 2467899999999999999999999998863
No 19
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.45 E-value=1.1e-13 Score=113.43 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=65.0
Q ss_pred ceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007603 365 AVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (596)
Q Consensus 365 ~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (596)
..+.+|.||.+++|+|||++|++|++|++.|||+|+|.+..+.. .+..++.|+|+|++++++.|+.+|.++|++
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35889999999999999999999999999999999998754321 246789999999999999999999998764
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.45 E-value=7.7e-14 Score=114.32 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=65.8
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007603 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (596)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (596)
..++.+|.||.+++|+|||++|++|++|++.|||+|+|.+.. .+..++.|+|+|++++|+.|+.+|.++|++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~-----~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-----EGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCC-----CCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 567999999999999999999999999999999999998631 357799999999999999999999999875
No 21
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.44 E-value=6.7e-14 Score=113.76 Aligned_cols=70 Identities=30% Similarity=0.458 Sum_probs=65.7
Q ss_pred CceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 127 ~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. +..+|+|+|+|++++|.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS----CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC----CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999873 45799999999999999999999999976
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=1.3e-13 Score=114.66 Aligned_cols=73 Identities=16% Similarity=0.387 Sum_probs=65.4
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007603 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
..++.+|.||.+++|+||||+|++|++|++.|||+|+|.+.. .+..++.|+|+|++++|++|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~-----~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV-----EGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCC-----CCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 568999999999999999999999999999999999998632 2567999999999999999999999988764
No 23
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.40 E-value=4.4e-13 Score=113.94 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=67.1
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+ ...++.|+|+|++++|++|+.+|.++|++.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG-----GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT-----TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCC-----CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999987432 456899999999999999999999998873
No 24
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=2.2e-13 Score=113.27 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=66.9
Q ss_pred CceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 127 ~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
..++.+|+||.+.+|+||||+|++|++|+++|||+|+|.+ .+++..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~--~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN--PVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECC--CCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEec--CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999987 356778999999999999999999999999875
No 25
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=112.27 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=67.5
Q ss_pred CceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 127 ~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
..++.+|+||...+|+||||+|++|++|+++|||+|.|.+ .++++.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN--PVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC--CCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC--CCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 3688999999999999999999999999999999999987 46778899999999999999999999999975
No 26
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.40 E-value=3.4e-13 Score=112.15 Aligned_cols=72 Identities=24% Similarity=0.414 Sum_probs=67.3
Q ss_pred CceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 127 ~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
..++.+|+||.+.+|+||||+|++|++|+++|||+|+|.+ .+++..+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC--TTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC--CCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999999987 35677899999999999999999999999987
No 27
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.2e-13 Score=113.36 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=63.4
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (596)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|++.+ +++.|+|+|++++|++|+++|.++++.
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC--------CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4668999999999999999999999999999999999998632 368999999999999999999997654
No 28
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.39 E-value=2.5e-13 Score=114.75 Aligned_cols=74 Identities=20% Similarity=0.414 Sum_probs=67.2
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.+.. ...+++.|+|+|++++|++|+.+|.+++++.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL-----EGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCC-----SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCC-----CCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999997632 2467899999999999999999999999874
No 29
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=3e-13 Score=113.78 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=66.6
Q ss_pred eEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007603 366 VAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (596)
Q Consensus 366 ~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (596)
.+.+|.||.+++|+|||++|++|++|++.|||+|+|.+..+. +.+..++.|+|+|++++++.|+.+|.++|.+.-
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 588999999999999999999999999999999999875432 125678999999999999999999999988643
No 30
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.38 E-value=3.1e-13 Score=110.64 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=66.0
Q ss_pred ceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCC-CCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 128 ~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~-p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
.++++|+||...+|+||||+|++|++|+++|||+|+|.++ ...+++.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999975 335677899999999999999999999998864
No 31
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=114.69 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=65.4
Q ss_pred EEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007603 367 AVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (596)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (596)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.+..+ | ..+..++.|+|+|++++|++|+.+|.++|++..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-P-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-T-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-C-CCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 7899999999999999999999999999999999987532 2 134568999999999999999999999988743
No 32
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-12 Score=108.53 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=65.4
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007603 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (596)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (596)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|.+.... ....+|.|+|+|++++++.|+.+|.+.+++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999999999999874331 246789999999999999999999998764
No 33
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.35 E-value=4.8e-13 Score=112.97 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=68.1
Q ss_pred CCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
...++.+|+||.+.+|.||||+|++|++|+++|||+|+|.+ .+++..+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~--~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS--CCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecC--CCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999987 35677899999999999999999999999987
No 34
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.33 E-value=1.7e-12 Score=110.71 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=67.4
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.+.... ....+|.|+|+|++++|+.|+.+|.++|++.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999999999999999999864331 1346899999999999999999999998763
No 35
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=113.22 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=63.8
Q ss_pred eEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007603 366 VAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 366 ~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
.+.+|.||.+++|+||||+|++||+|+++|||+|+|.+... ...+|.|+|+|++++|++|+.+|.+++++.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999986432 356899999999999999999999998874
No 36
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.33 E-value=1.6e-12 Score=124.53 Aligned_cols=145 Identities=15% Similarity=0.139 Sum_probs=99.1
Q ss_pred EEEEEeccCccceeecCCChHHHHHHHHhCceEEEeCCCCCCCceEEEEccCcchhhhhhhccccccccCCCccHHHHHH
Q 007603 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAV 105 (596)
Q Consensus 26 ~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~V~~~~~g~~eRvi~I~G~~e~~~~a~~~~~~~~~e~~~~~~A~~Al 105 (596)
.++++||.+.+|.|||++|++++.|++++||+|+++. .++.++|..+....+. ..+..|.+.+
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp------------~~i~KA~dlI 67 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPP------------VNLMKAAEVV 67 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCH------------HHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCH------------HHHHHHHHHH
Confidence 3689999999999999999999999999999999963 4677888732211000 0012232322
Q ss_pred HHHHHHHHhhhhccCCCCCCCCceEEEEE-ec----------cceeeeeeecCchhhhhhccccccEEEecCCCCCCCCC
Q 007603 106 IRVFERMWEVEAEVEGDGDGDDVAYCGLL-AN----------TTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAID 174 (596)
Q Consensus 106 ~~i~~~i~~~~~~~~~~~~~~~~vt~rll-Vp----------~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~ 174 (596)
..+..-. +.+... .--++...+..+ ++ ....|+||||+|++|+.|+..|||+|.|..
T Consensus 68 ~ai~rgf-~~e~A~---~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~-------- 135 (191)
T 1tua_A 68 KAISLGF-PPEKAF---RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE-------- 135 (191)
T ss_dssp HHHHHTC-CHHHHG---GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS--------
T ss_pred HHHHcCC-CHHHhh---hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC--------
Confidence 2221100 000000 000012334332 33 236899999999999999999999999943
Q ss_pred CcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 175 DQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 175 dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
+.|.|.|++++++.|...|.+++..
T Consensus 136 -~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 136 -YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp -SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred -CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999975
No 37
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=7.6e-13 Score=111.26 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=67.4
Q ss_pred ceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCC-CCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 128 ~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~-p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
.++++|+||...+|+||||+|++|++|+++|||+|.|.++ ...+++.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999999875 2356778999999999999999999999999763
No 38
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.31 E-value=1.5e-12 Score=110.70 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=67.8
Q ss_pred CCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
...++.+|+||...+|+||||+|++|++|+++|||+|+|.++ .++..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~--~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD--SGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSC--CTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCC--CCCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 347899999999999999999999999999999999999874 34567899999999999999999999999874
No 39
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.31 E-value=2.7e-12 Score=111.53 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=67.5
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (596)
....+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+. ...+++.|+|+|+.++|++|+.+|.+++++..
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG---TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC---SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC---CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 466899999999999999999999999999999999999875431 12458999999999999999999999997644
No 40
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=107.50 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=66.9
Q ss_pred CCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
....+.+|.||...+|.||||+|++|++|+++|||+|.|.++...+...+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 446789999999999999999999999999999999999885223457899999999999999999999998864
No 41
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=113.57 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=65.1
Q ss_pred EEEEEeccceeeeeeecCchhhhhhccccccEEEecCC-CCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 130 YCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 130 t~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~-p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
+++|+||.+.+|+||||+|++||+|+++|||+|+|.++ ....+..+|+|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999999999999999999999885 2233457899999999999999999999999874
No 42
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=4.1e-12 Score=108.45 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=67.8
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (596)
...++.+|.||.+++|.|||++|++|++|+++|||+|+|++..+ .+++.|+|+|++++|+.|+.+|...++++.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999976432 347899999999999999999999988866
Q ss_pred cc
Q 007603 443 KS 444 (596)
Q Consensus 443 ~~ 444 (596)
-+
T Consensus 88 ~~ 89 (95)
T 2ctm_A 88 AD 89 (95)
T ss_dssp TS
T ss_pred HH
Confidence 43
No 43
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=6.9e-12 Score=107.51 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=65.1
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007603 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (596)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (596)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|++..+ ....++.|+|+|+.++++.|+.+|...+++
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~----~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD----GNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT----CSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC----CCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999999987543 134689999999999999999999998775
No 44
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.28 E-value=5e-12 Score=121.01 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=102.2
Q ss_pred EEEEeccccccccccccchhhhhhhhccCeeEEEeCCCCCCCccEEEEEecCCCCCCCchHHHHHHHHHhhhhhccccCC
Q 007603 276 LRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQG 355 (596)
Q Consensus 276 ~~l~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~~i~e~~~~~g 355 (596)
+++.||.+.+|.|||++|++++.|++.+|++|+++. .++.|+|..+..-.+ ...++.|...+..-.....++..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~d-p~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIP-PVNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSC-HHHHHHHHHHHHHHHHTCCHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCC-HHHHHHHHHHHHHHHcCCCHHHh
Confidence 578999999999999999999999999999999983 367888885421111 13344554444332211100000
Q ss_pred CCCCCCCCCceEEEEEec----------cccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHH
Q 007603 356 FSSGENKGDAVAVSILVG----------ADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYK 425 (596)
Q Consensus 356 ~~~g~~~~~~~t~~l~VP----------~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~ 425 (596)
. ..-.+......+.++ .+..|+|||++|.+|+.|++.|||+|.|.. +.|.|.|+++
T Consensus 80 ~--~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------------~~v~i~G~~~ 145 (191)
T 1tua_A 80 F--RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------------YEVAIIGDYE 145 (191)
T ss_dssp G--GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS------------SEEEEEEEHH
T ss_pred h--hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC------------CEEEEEeChH
Confidence 0 000112233344444 246899999999999999999999999953 4899999999
Q ss_pred HHHHHHHHHHHHHhh
Q 007603 426 NVQNALSEVVGRLRH 440 (596)
Q Consensus 426 ~V~~A~~~I~~~Lr~ 440 (596)
+++.|...|...+..
T Consensus 146 ~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 146 RAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998864
No 45
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.28 E-value=2e-12 Score=110.26 Aligned_cols=77 Identities=26% Similarity=0.430 Sum_probs=68.3
Q ss_pred CCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 125 ~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
....++.+|+||...+|+||||+|++|++|+++|||+|.|.++.......+|+|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34578999999999999999999999999999999999998851112457899999999999999999999999873
No 46
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.28 E-value=4.1e-12 Score=102.56 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=60.7
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHH
Q 007603 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGR 437 (596)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~ 437 (596)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|++.. ..++.|+|+|+.+++++|+.+|.+.
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999998632 3568999999999999999999874
No 47
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.24 E-value=8.1e-12 Score=106.53 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=64.7
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
...++.+|.||.+++|.|||++|++||+|+++|||+|+|++.+ ..++.|+|+|+++++++|+.+|...+++.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 4568999999999999999999999999999999999998632 23579999999999999999999988764
No 48
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.6e-12 Score=106.00 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=63.5
Q ss_pred CCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
...++.+|.||.+.+|+||||+|++||+|+++|||+|+|.+. .++++|+|+|++++|++|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-----~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-----DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-----SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-----CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 447899999999999999999999999999999999999762 2478999999999999999999998764
No 49
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=5e-12 Score=110.10 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=64.5
Q ss_pred eEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 129 AYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 129 vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
.+++|+||.+.+++||||+|++||+|+++|||+|+|.++ .....+|+|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~--~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD--DGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSS--CSSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999999999999873 34567899999999999999999999999873
No 50
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.21 E-value=9.9e-12 Score=108.00 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=66.2
Q ss_pred CceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 127 ~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
..++.+|+||...+|+||||+|++|++|+++|||+|+|.+........++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 468899999999999999999999999999999999998741111246899999999999999999999999774
No 51
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.16 E-value=3.1e-11 Score=104.73 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=64.1
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007603 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (596)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (596)
.+.+.+|.||.+++|.|||++|++|++|+++|||+|+|++.. ...+.|+|+|+.++|+.|+.+|...+++..
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 458999999999999999999999999999999999998632 235699999999999999999999887643
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.13 E-value=3.1e-11 Score=97.37 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=60.9
Q ss_pred ceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHH
Q 007603 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCL 198 (596)
Q Consensus 128 ~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L 198 (596)
..+..|.||...++.|||++|++|++|+++|||+|.|.++ +..+|.|+|+|..++|.+|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~----g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD----SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC----CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC----CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999773 336789999999999999999998764
No 53
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=5.4e-11 Score=101.95 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=65.2
Q ss_pred ceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 128 ~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
.+++.|.||...++.||||+|++|++|+++|||+|+|.++ ..+...+|.|+|+|..++|.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~-g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDK-DDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCT-TTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCC-CCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999874 22334789999999999999999999999876
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.10 E-value=4.4e-11 Score=101.95 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=64.9
Q ss_pred CCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
...++.+|.||...+|.|||++|++|++|+++|||+|+|.+. ...++.|+|+|..++|.+|+.+|.+++.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~----~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP----DDPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT----TSSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC----CCCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 347899999999999999999999999999999999999762 234689999999999999999999999874
No 55
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=1e-10 Score=99.76 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
...++..|.||...++.|||++|++|++|+++|||+|+|..+ ....++.|+|+|..++|.+|+.+|..++.+.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~---g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQS---GAPDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCT---TCSCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCC---CCCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999763 1235789999999999999999999999874
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=1.7e-10 Score=98.39 Aligned_cols=71 Identities=14% Similarity=0.240 Sum_probs=64.7
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHh-CCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVT-GTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~T-Ga~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (596)
...++.+|.||.++++.|||++|++|++|+++| ||+|+|++. +...+.|+|+|+.++|++|+.+|...+.+
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 567899999999999999999999999999999 999999763 34567999999999999999999998876
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.99 E-value=6.9e-10 Score=95.84 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=61.2
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHH-hCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007603 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDV-TGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~-TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
..++.+|.||+++|++|||++|++|++|+++ ++++|+|++ +++.|+|+|++++|.+|+.+|...+++.
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999996 599999975 2578999999999999999999888763
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=3.4e-10 Score=98.21 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=62.9
Q ss_pred ceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 128 ~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
+++..|.||...++.|||++|++|++|+++|||+|.|.++ +...+.|+|+|..++|.+|+.+|..++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~----g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP----ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT----TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC----CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999999999773 22456999999999999999999999876
No 59
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.95 E-value=6.3e-10 Score=96.10 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=61.3
Q ss_pred ceEEEEEeccceeeeeeecCchhhhhhccc-cccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhcc
Q 007603 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIE-SGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (596)
Q Consensus 128 ~vt~rllVp~~~vG~IIGKgG~~Ik~I~~e-sGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e~ 201 (596)
.++.+|.||..++++|||++|++|++|+++ ++++|+|+. .++.|+|+|+++.|.+|..+|..++++.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 599999855 4679999999999999999999999774
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.83 E-value=2e-09 Score=91.62 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=65.2
Q ss_pred CCCceEEEEEeccceeeeeeecCchhhhhhcccc-ccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIES-GAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 125 ~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~es-Ga~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
.++.++..|.||...++.|||++|++|++|+++| ||+|.|..+ ++..+.|+|+|..++|.+|+.+|..++.+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~----g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE----GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT----TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC----CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4457889999999999999999999999999999 999999763 44567899999999999999999999987
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.76 E-value=3.5e-09 Score=88.81 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=61.6
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHHhCCe-EEEeCCCcccccCCCCCcEEEEcC-CHHHHHHHHHHHHHHHhh
Q 007603 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTD-IKLVGGEQVLGCAAQNDVVIQISG-EYKNVQNALSEVVGRLRH 440 (596)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~-I~I~~~~~~P~~~~~~er~V~I~G-~~~~V~~A~~~I~~~Lr~ 440 (596)
...+..+|.||.+++|.+||++|++|++|++.|||+ |.|.+ ++..|+|.| +.+++++|+.+|...-..
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 456899999999999999999999999999999998 99953 358899999 899999999999764444
Q ss_pred cccc
Q 007603 441 NLKS 444 (596)
Q Consensus 441 ~~~~ 444 (596)
+.++
T Consensus 82 ~~vp 85 (91)
T 2cpq_A 82 IQVP 85 (91)
T ss_dssp CCCC
T ss_pred EecC
Confidence 4443
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.52 E-value=6.4e-08 Score=81.15 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=58.9
Q ss_pred CCceEEEEEeccceeeeeeecCchhhhhhccccccE-EEecCCCCCCCCCCcEEEEee-cHHHHHHHHHHHHHHHh
Q 007603 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAK-IVMLPPPACAAIDDQLIQITG-ATLAVKKALVAVTTCLQ 199 (596)
Q Consensus 126 ~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~-I~I~~~p~~~~~~dRiV~I~G-~~e~V~~A~~~I~~~L~ 199 (596)
...+...|.||...++.+||++|++|++|+++|||+ |.|.. ++..|+|.| +.+++.+|+.+|..+-+
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-------ddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-------DTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-------CCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 346888999999999999999999999999999998 99965 468999999 79999999988765443
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.44 E-value=4.4e-07 Score=81.64 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=63.5
Q ss_pred CceEEEEEeccc------cccccccCCCchhHHHHHHhCCeEEEeCCCcc-----------cccCCCCCcEEEEcC-CHH
Q 007603 364 DAVAVSILVGAD------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV-----------LGCAAQNDVVIQISG-EYK 425 (596)
Q Consensus 364 ~~~t~~l~VP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~-----------P~~~~~~er~V~I~G-~~~ 425 (596)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+... +.....++-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457899999988 88999999999999999999999999763210 011123467888999 488
Q ss_pred HHHHHHHHHHHHHhhcc
Q 007603 426 NVQNALSEVVGRLRHNL 442 (596)
Q Consensus 426 ~V~~A~~~I~~~Lr~~~ 442 (596)
.+++|+.+|...|.+++
T Consensus 85 ~~~~A~~~I~~ll~~~~ 101 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQGI 101 (131)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999988754
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=2.6e-06 Score=75.14 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=58.6
Q ss_pred CceEEEEEeccc-------cccccccCCCchhHHHHHHhCCeEEEeCCCcc---c--ccCCCCCcEEEEcC-CHHHHHHH
Q 007603 364 DAVAVSILVGAD-------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV---L--GCAAQNDVVIQISG-EYKNVQNA 430 (596)
Q Consensus 364 ~~~t~~l~VP~~-------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~---P--~~~~~~er~V~I~G-~~~~V~~A 430 (596)
...+.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..+... + .-...++-.|.|++ +.+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 357888888865 78999999999999999999999999743110 0 00112345677775 58899999
Q ss_pred HHHHHHHHhh
Q 007603 431 LSEVVGRLRH 440 (596)
Q Consensus 431 ~~~I~~~Lr~ 440 (596)
+.+|...|.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999998875
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.26 E-value=9.4e-07 Score=79.51 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=61.5
Q ss_pred ceEEEEEeccc------eeeeeeecCchhhhhhccccccEEEecCCC--------------CCCCCCCcEEEEeec-HHH
Q 007603 128 VAYCGLLANTT------KIGVVVGKGGRNVTRMRIESGAKIVMLPPP--------------ACAAIDDQLIQITGA-TLA 186 (596)
Q Consensus 128 ~vt~rllVp~~------~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p--------------~~~~~~dRiV~I~G~-~e~ 186 (596)
.++.++.||.. .+|.|||++|.+||+|+++|||+|.|.... ......+-.|.|++. .++
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 68899999988 788999999999999999999999997530 001224668889995 999
Q ss_pred HHHHHHHHHHHHhc
Q 007603 187 VKKALVAVTTCLQH 200 (596)
Q Consensus 187 V~~A~~~I~~~L~e 200 (596)
+.+|+.+|..+|.+
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999976
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=1.4e-06 Score=76.98 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=58.3
Q ss_pred ceEEEEEeccc-------eeeeeeecCchhhhhhccccccEEEecCCCC--------CCCCCCcEEEEeec-HHHHHHHH
Q 007603 128 VAYCGLLANTT-------KIGVVVGKGGRNVTRMRIESGAKIVMLPPPA--------CAAIDDQLIQITGA-TLAVKKAL 191 (596)
Q Consensus 128 ~vt~rllVp~~-------~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~--------~~~~~dRiV~I~G~-~e~V~~A~ 191 (596)
.++.+|.||-. .+|.|||++|.+||+|+++|||+|.|..+.. ....++-.|.|++. .+++.+|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 57788888875 7889999999999999999999999974200 01123456778765 99999999
Q ss_pred HHHHHHHhc
Q 007603 192 VAVTTCLQH 200 (596)
Q Consensus 192 ~~I~~~L~e 200 (596)
.+|.+++.+
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999975
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.87 E-value=1.3e-05 Score=72.53 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=55.6
Q ss_pred eEEEEEeccc------cccccccCCCchhHHHHHHhCCeEEEeCCCcc------------cccC-CCCCcEEEEcCC-HH
Q 007603 366 VAVSILVGAD------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV------------LGCA-AQNDVVIQISGE-YK 425 (596)
Q Consensus 366 ~t~~l~VP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~------------P~~~-~~~er~V~I~G~-~~ 425 (596)
++.+|.||-+ ++|.|||++|.++|+|+++|||+|.|-.+.-. |.+. ..+.--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4678888854 49999999999999999999999999875421 1111 223347888884 32
Q ss_pred -----HHHHHHHHHHHHHh
Q 007603 426 -----NVQNALSEVVGRLR 439 (596)
Q Consensus 426 -----~V~~A~~~I~~~Lr 439 (596)
.++.|+.+|...|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78899999988776
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.79 E-value=8.3e-06 Score=73.83 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=56.1
Q ss_pred eEEEEEeccce------eeeeeecCchhhhhhccccccEEEecCCCCC----------------CCCCCcEEEEeec-HH
Q 007603 129 AYCGLLANTTK------IGVVVGKGGRNVTRMRIESGAKIVMLPPPAC----------------AAIDDQLIQITGA-TL 185 (596)
Q Consensus 129 vt~rllVp~~~------vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~----------------~~~~dRiV~I~G~-~e 185 (596)
++.++.||... +|.|||++|.++|+|+++|||+|.|..+... ....+=-|.|++. .+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788998765 8999999999999999999999999874110 0112237788885 33
Q ss_pred -----HHHHHHHHHHHHHhc
Q 007603 186 -----AVKKALVAVTTCLQH 200 (596)
Q Consensus 186 -----~V~~A~~~I~~~L~e 200 (596)
.+.+|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 799999999999864
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.64 E-value=5.1e-05 Score=84.99 Aligned_cols=90 Identities=11% Similarity=0.109 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhhhhccccCCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCC
Q 007603 336 VQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQND 415 (596)
Q Consensus 336 a~~Av~~i~~~i~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~e 415 (596)
+.++...|++.+.+...... ............+.||.+++|.|||+||++||+|+++|||+|.|.+ +
T Consensus 539 A~~g~~~I~~~m~~al~~~~--~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----------~ 605 (630)
T 3u1k_A 539 ASVAKKEILQIMNKTISKPR--ASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD-----------E 605 (630)
T ss_dssp HHHHHHHHHHHHHHHCSSCC--SSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----------S
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-----------C
Confidence 44555556555544321110 0112235678999999999999999999999999999999999953 5
Q ss_pred cEEEEcCC-HHHHHHHHHHHHHHH
Q 007603 416 VVIQISGE-YKNVQNALSEVVGRL 438 (596)
Q Consensus 416 r~V~I~G~-~~~V~~A~~~I~~~L 438 (596)
-.|.|.|+ .+.+++|+.+|.+.+
T Consensus 606 G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 606 ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp SEEEEEESSHHHHHHHHHHTTC--
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 78999987 678999999987654
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.58 E-value=4.5e-05 Score=85.49 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEE
Q 007603 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (596)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV 178 (596)
..|.++..+++..+.+.............+....+-||...++.|||+||++||+|+++|||+|.|.. +..|
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d--------~G~V 608 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD--------EETF 608 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS--------SSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC--------CcEE
Confidence 45666666666665544332211122233567788999999999999999999999999999999954 5789
Q ss_pred EEeec-HHHHHHHHHHHHHHH
Q 007603 179 QITGA-TLAVKKALVAVTTCL 198 (596)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L 198 (596)
.|.|. .+++.+|+.+|..++
T Consensus 609 ~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 609 SVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEESSHHHHHHHHHHTTC--
T ss_pred EEEeCCHHHHHHHHHHHHHHh
Confidence 99987 789999999987654
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.57 E-value=0.00015 Score=64.36 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=60.0
Q ss_pred EEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHh
Q 007603 367 AVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLR 439 (596)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr 439 (596)
-..+.|.++.++.|+|++|+.|+.|+..|++.|+|..-+ .++...|+|.|++..-..|+.+|.....
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999998753 2468999999999999999999987655
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.48 E-value=3.7e-05 Score=69.96 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=71.8
Q ss_pred EEEEEEeccCccceeecCCChHHHHHHHHhCceEEEeCCCCCCCceEEEEccCcch-hhhhhhccccccccCCCccHHHH
Q 007603 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQE 103 (596)
Q Consensus 25 ~~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~V~~~~~g~~eRvi~I~G~~e~-~~~a~~~~~~~~~e~~~~~~A~~ 103 (596)
=.+.++|+...+|+.||++|++|+.|+++.|-+|+|-+...+ ++. +.++ ++||.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-----------~~~fI~na-------------LsPA~- 90 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-----------LERIVKNL-------------FPGVK- 90 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-----------HHHHHHHH-------------STTSC-
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-----------HHHHHHHh-------------cCCce-
Confidence 356789999999999999999999999999999988443111 110 0000 11110
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEec
Q 007603 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVML 165 (596)
Q Consensus 104 Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~ 165 (596)
+....... .++...+.+.||..+.+..|||+|.+++...+-||.+|.|.
T Consensus 91 --------V~~V~i~~-----~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 91 --------IESINVRE-----RNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp --------EEEEEEEE-----ETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred --------EEEEEEee-----cCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 00000000 01256788999999999999999999999999999887774
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.89 E-value=0.00096 Score=59.30 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=59.9
Q ss_pred EEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Q 007603 130 YCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (596)
Q Consensus 130 t~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV~I~G~~e~V~~A~~~I~~~L~e 200 (596)
.+.+.|.+..++.|+|++|+.|+.|+..|+|.|++..- . .+..-.|+|.|.+..=.+|+.+|..+..-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~--~-s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW--G-PERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC--C-TTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc--C-CCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999873 2 23667799999999999999999988754
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.87 E-value=0.00031 Score=63.87 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=72.5
Q ss_pred EEEEEeccccccccccccchhhhhhhhccCeeEEEeCCCCCCCccEEEEEecCCCCCCCchHHHHHHHHH--hhhhhccc
Q 007603 275 ALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVEG 352 (596)
Q Consensus 275 ~~~l~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~--~~i~e~~~ 352 (596)
.+.++|+...+|..||++|.+|+.|+++.|-+|.|-.-..+ +. .-+..++ .++....+
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-------------------~~-~fI~naLsPA~V~~V~i 96 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-------------------LE-RIVKNLFPGVKIESINV 96 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-------------------HH-HHHHHHSTTSCEEEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-------------------HH-HHHHHhcCCceEEEEEE
Confidence 56788999999999999999999999999998887643211 11 0111110 01110000
Q ss_pred cCCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeC
Q 007603 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVG 403 (596)
Q Consensus 353 ~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~ 403 (596)
. ..+....+.+.||.++.+..|||+|++++-..+.||.+|.|.+
T Consensus 97 ~-------~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 97 R-------ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp E-------EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred e-------ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 0 0023457889999999999999999999999999999988753
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.82 E-value=0.00071 Score=76.71 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhhhccccCCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCC
Q 007603 336 VQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQND 415 (596)
Q Consensus 336 a~~Av~~i~~~i~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~e 415 (596)
+.++...|++.+.+..... .. ......+....+.||.++++.|||+||++||+|+++|||+|.|.+ +
T Consensus 542 A~~g~~~I~~~m~~al~~~-r~-~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d-----------d 608 (726)
T 4aid_A 542 AKEGRAHILGEMNKAMDAP-RA-DVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND-----------D 608 (726)
T ss_dssp HHHHHHHHHHHHHTTCSSC-CS-SCCSSCCC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhh-hh-hhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-----------C
Confidence 4455556665554332111 00 111234457889999999999999999999999999999998853 4
Q ss_pred cEEEEcCC-HHHHHHHHHHHHHHHhhcc
Q 007603 416 VVIQISGE-YKNVQNALSEVVGRLRHNL 442 (596)
Q Consensus 416 r~V~I~G~-~~~V~~A~~~I~~~Lr~~~ 442 (596)
..|.|.+. .+.+++|+.+|...+.+.-
T Consensus 609 G~v~I~~~~~~~~~~A~~~i~~i~~~~~ 636 (726)
T 4aid_A 609 GVVKVSASDGAKIKAAIDWIKSITDEAE 636 (726)
T ss_dssp -----CCSCHHHHHHHHHC---------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 56777776 7889999999988776543
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.69 E-value=0.00072 Score=76.66 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEE
Q 007603 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (596)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV 178 (596)
..|.++...++..+.+.....-..-....+....+-||...++.|||+||++||+|.++||++|.|.. +..|
T Consensus 540 ~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d--------dG~v 611 (726)
T 4aid_A 540 AQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND--------DGVV 611 (726)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC--------CceE
Confidence 45556666666665443322111111222445677889999999999999999999999999999954 4567
Q ss_pred EEeec-HHHHHHHHHHHHHHHhc
Q 007603 179 QITGA-TLAVKKALVAVTTCLQH 200 (596)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L~e 200 (596)
.|.+. .+++.+|+..|..++.+
T Consensus 612 ~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 612 KVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp --CCSCHHHHHHHHHC-------
T ss_pred EEEeCCHHHHHHHHHHHHHHhhh
Confidence 77775 99999999999988865
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.51 E-value=0.004 Score=61.42 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=62.9
Q ss_pred CccceeecCCChHHHHH-HHHhCceEEEeCCCCCCCceEEEEccCcch-hhhhhhccccccccCCCccHHHHHHHHHHHH
Q 007603 34 PVVGGLIGRSGSIISSI-RRDTKCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQEAVIRVFER 111 (596)
Q Consensus 34 ~~vg~IIGk~G~~Ik~I-r~eTga~I~V~~~~~g~~eRvi~I~G~~e~-~~~a~~~~~~~~~e~~~~~~A~~Al~~i~~~ 111 (596)
+-+|+-||++|++|+.| ++-.|-+|.|-....+ ++. +.+| ++|| +
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p~~fi~na-------------lsPA---------~ 172 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------PARFVANA-------------LSPA---------K 172 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------HHHHHHHH-------------TTTS---------C
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-----------HHHHHHhc-------------cCCc---------c
Confidence 56899999999999999 5666888887433111 100 0011 0000 0
Q ss_pred HHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCC
Q 007603 112 MWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (596)
Q Consensus 112 i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~ 167 (596)
+......+ ...-.+.+.||..+.+.-|||+|.|++.-..-||.+|.|...
T Consensus 173 V~~V~i~~------~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 173 VVSVSVID------QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp CSEEEEEE------TTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred eEEEEEEc------CCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 00000000 012468899999999999999999999999999999999763
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.43 E-value=0.0048 Score=64.23 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=64.6
Q ss_pred CccceeecCCChHHHHHHHHh-CceEEEeCCCCCCCceEEEEccCcch-hhhhhhccccccccCCCccHHHHHHHHHHHH
Q 007603 34 PVVGGLIGRSGSIISSIRRDT-KCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQEAVIRVFER 111 (596)
Q Consensus 34 ~~vg~IIGk~G~~Ik~Ir~eT-ga~I~V~~~~~g~~eRvi~I~G~~e~-~~~a~~~~~~~~~e~~~~~~A~~Al~~i~~~ 111 (596)
+-+|+.||++|++|+.|.++. |-+|.|-....+ ++. +.++ ++|| +
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p~~fi~na-------------lsPA---------~ 295 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------PARFVANA-------------LSPA---------K 295 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------HHHHHHHH-------------TTTS---------C
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-----------HHHHHHHh-------------cCCc---------c
Confidence 568999999999999999999 888887432111 100 0000 0000 0
Q ss_pred HHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCC
Q 007603 112 MWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (596)
Q Consensus 112 i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~ 167 (596)
+.....- ......+.+.||..+.+..|||+|.+++....-||.+|.|...
T Consensus 296 V~~V~~~------~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 296 VVSVSVI------DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp CSEEEEE------ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred eeEEEEE------cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 0000000 0013468899999999999999999999999999999999763
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.32 E-value=0.039 Score=54.43 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=65.2
Q ss_pred ccccccccccchhhhhh-hhccCeeEEEeCCCCCCCccEEEEEecCCCCCCCchHHHHHHHHHh--hhhhccccCCCCCC
Q 007603 283 WTASGIIGKRGAIVRSL-QNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFA--RSVEVEGQQGFSSG 359 (596)
Q Consensus 283 ~~vg~IIGk~G~~Ik~I-~~~tGa~I~i~~~~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~~--~i~e~~~~~g~~~g 359 (596)
+-+|.-||++|.+|+.| ++-.|-+|.|-.-..+ ++ .-+...+. ++....+
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------------p~-~fi~nalsPA~V~~V~i------- 178 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------------PA-RFVANALSPAKVVSVSV------- 178 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------------HH-HHHHHHTTTSCCSEEEE-------
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-------------------HH-HHHHhccCCcceEEEEE-------
Confidence 56899999999999999 6667877777633211 11 11111110 0100000
Q ss_pred CCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCc
Q 007603 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQ 406 (596)
Q Consensus 360 ~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~ 406 (596)
......++.+.||.++.+.-|||+|++++.-.+.||.+|.|.+..+
T Consensus 179 -~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 179 -IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp -EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred -EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 0012247899999999999999999999999999999999987554
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=93.82 E-value=0.079 Score=55.10 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=66.3
Q ss_pred ccccccccccchhhhhhhhcc-CeeEEEeCCCCCCCccEEEEEecCCCCCCCchHHHHHHHHH--hhhhhccccCCCCCC
Q 007603 283 WTASGIIGKRGAIVRSLQNAS-GALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVEGQQGFSSG 359 (596)
Q Consensus 283 ~~vg~IIGk~G~~Ik~I~~~t-Ga~I~i~~~~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~--~~i~e~~~~~g~~~g 359 (596)
+-+|..||++|.+|+.|.++. |=+|.|-.-.. .++ .-+...+ .++.....
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~-------------------dp~-~fi~nalsPA~V~~V~~------- 301 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD-------------------DPA-RFVANALSPAKVVSVSV------- 301 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS-------------------SHH-HHHHHHTTTSCCSEEEE-------
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCC-------------------CHH-HHHHHhcCCcceeEEEE-------
Confidence 568999999999999999998 77777653211 111 1111110 01100000
Q ss_pred CCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCc
Q 007603 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQ 406 (596)
Q Consensus 360 ~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~ 406 (596)
..+....+.+.||.++.+..|||+|.+++-..+.||.+|.|....+
T Consensus 302 -~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 302 -IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp -EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred -EcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 0012347899999999999999999999999999999999987554
No 81
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.49 E-value=0.028 Score=58.25 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=63.0
Q ss_pred CccceeecCCChHHHHHHHHh-CceEEEeCCCCCCCceEEEEccCcch-hhhhhhccccccccCCCccHHHHHHHHHHHH
Q 007603 34 PVVGGLIGRSGSIISSIRRDT-KCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQEAVIRVFER 111 (596)
Q Consensus 34 ~~vg~IIGk~G~~Ik~Ir~eT-ga~I~V~~~~~g~~eRvi~I~G~~e~-~~~a~~~~~~~~~e~~~~~~A~~Al~~i~~~ 111 (596)
+-+|+.||.+|++|+.+.++. |-+|.|-....+ ++. +.+| ++|| +
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-----------~~~fi~na-------------l~Pa---------~ 291 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-----------PKQLIANA-------------LAPA---------T 291 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-----------HHHHHHHH-------------TCSS---------C
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-----------HHHHHHHh-------------cCcc---------E
Confidence 468999999999999999999 667776432111 000 0000 0000 0
Q ss_pred HHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecC
Q 007603 112 MWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLP 166 (596)
Q Consensus 112 i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~ 166 (596)
+......+ ...-.+.+.||..+.+.-|||+|.|++.-..-||.+|.|..
T Consensus 292 v~~v~~~d------~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 292 VIEVEILD------KENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp CSEEEEEE------TTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEEEc------CCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 00000000 11346889999999999999999999999999999999965
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.89 E-value=0.023 Score=64.95 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEE
Q 007603 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (596)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV 178 (596)
..|.++...++..+.+..... ..-....+....+-||...++.+||++|++||+|.+++|+.|.|.. +..|
T Consensus 569 ~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--------dG~v 639 (757)
T 1e3p_A 569 KQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED--------DGTI 639 (757)
T ss_dssp HHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC----------------
T ss_pred HHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC--------CceE
Confidence 445556666666555433222 2111122333456789999999999999999999999999998843 4667
Q ss_pred EEeec-HHHHHHHHHHHHHHH
Q 007603 179 QITGA-TLAVKKALVAVTTCL 198 (596)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L 198 (596)
.|+.. .+...+|...|..+.
T Consensus 640 ~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 640 YIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCBSSHHHHCC---------
T ss_pred EEecCCHHHHHHHHHHHHHhc
Confidence 77765 777777776665544
No 83
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.86 E-value=0.034 Score=63.26 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCCCceEEEEEeccceeeeeeecCchhhhhhccccccEEEecCCCCCCCCCCcEE
Q 007603 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (596)
Q Consensus 99 ~~A~~Al~~i~~~i~~~~~~~~~~~~~~~~vt~rllVp~~~vG~IIGKgG~~Ik~I~~esGa~I~I~~~p~~~~~~dRiV 178 (596)
..|.++...++..+.+........-....+....+-||...++.+||++|.+|+.|.+++|+.|.|.. +..|
T Consensus 530 ~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~--------dg~v 601 (723)
T 3cdi_A 530 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED--------DGTV 601 (723)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC--------CccE
Confidence 44555555565555443222111111122345567789999999999999999999999999998853 4567
Q ss_pred EEeec-HHHHHHHHHHHHHHHh
Q 007603 179 QITGA-TLAVKKALVAVTTCLQ 199 (596)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L~ 199 (596)
.|.+. .+.+.+|...|..++.
T Consensus 602 ~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 602 KIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------
T ss_pred EEecCCHHHHHHHHHHHHHHhh
Confidence 77665 7788888777766654
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.06 E-value=0.019 Score=65.56 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhhccccCCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCC
Q 007603 336 VQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQND 415 (596)
Q Consensus 336 a~~Av~~i~~~i~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~e 415 (596)
+.++...|++.+.+..... .......+....+.||.+++|.+||++|++||+|++.|||.|.|.. +
T Consensus 571 A~~~~~~I~~~m~~al~~~---~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------d 636 (757)
T 1e3p_A 571 ARDARLHILDVMMEAIDTP---DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------D 636 (757)
T ss_dssp HHHHHHHHHHHHHHHCSSC---CCCCTTSCBCCCC------------------CTTCCCCCSCC----------------
T ss_pred HHHHHHHHHHHHHHHhccc---ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------C
Confidence 4445555555554332111 1111223445678899999999999999999999999999998853 3
Q ss_pred cEEEEcCC-HHHHHHHHHHHHH
Q 007603 416 VVIQISGE-YKNVQNALSEVVG 436 (596)
Q Consensus 416 r~V~I~G~-~~~V~~A~~~I~~ 436 (596)
..|.|+.. .+..+.|+..|..
T Consensus 637 G~v~Is~~~~~~~~~a~~~i~~ 658 (757)
T 1e3p_A 637 GTIYIGAADGPAAEAARATING 658 (757)
T ss_dssp ---CCCBSSHHHHCC-------
T ss_pred ceEEEecCCHHHHHHHHHHHHH
Confidence 56777665 4566667666654
No 85
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.05 E-value=0.07 Score=60.66 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=0.0
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCC-HHHHHHHHHHHHHHHh
Q 007603 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE-YKNVQNALSEVVGRLR 439 (596)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~-~~~V~~A~~~I~~~Lr 439 (596)
.+....+.||.++++.+||++|.+|+.|.++||+.|.|.. +..|.|.+. .+.+++|..+|...+.
T Consensus 558 ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 558 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 4567888999999999999999999999999999998753 355777665 5567778777766544
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=90.46 E-value=0.23 Score=51.30 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=64.1
Q ss_pred cccccccccccchhhhhhhhcc-CeeEEEeCCCCCCCccEEEEEecCCCCCCCchHHHHHHHHH--hhhhhccccCCCCC
Q 007603 282 GWTASGIIGKRGAIVRSLQNAS-GALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVEGQQGFSS 358 (596)
Q Consensus 282 ~~~vg~IIGk~G~~Ik~I~~~t-Ga~I~i~~~~~~~~er~v~IsG~e~p~~~~~~a~~Av~~i~--~~i~e~~~~~g~~~ 358 (596)
-+-+|..||.+|.+|+.|.++. |-+|.|-.-.. .|+ .-+...+ .++....+
T Consensus 244 iDpvGacvg~~G~ri~~i~~el~ge~Idii~~s~-------------------d~~-~fi~nal~Pa~v~~v~~------ 297 (344)
T 1hh2_P 244 VDPIGACIGEGGSRIAAILKELKGEKLDVLKWSD-------------------DPK-QLIANALAPATVIEVEI------ 297 (344)
T ss_dssp SCHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCS-------------------SHH-HHHHHHTCSSCCSEEEE------
T ss_pred ccccceeeccCCcEeHHHHHHhCCCeeeEEecCC-------------------CHH-HHHHHhcCccEEEEEEE------
Confidence 3567999999999999999987 66666543211 111 1111110 01100000
Q ss_pred CCCCCCceEEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCC
Q 007603 359 GENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGG 404 (596)
Q Consensus 359 g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~ 404 (596)
..+...+..+.||.++.+.-|||+|++++.-.+.||.+|.|.+.
T Consensus 298 --~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 298 --LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp --EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred --EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 00123478999999999999999999999999999999999753
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=62.88 E-value=2.8 Score=34.70 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=24.8
Q ss_pred EEEEEeccCccceeecCCChHHHHHHHHh
Q 007603 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (596)
Q Consensus 26 ~~rilvP~~~vg~IIGk~G~~Ik~Ir~eT 54 (596)
..+|.+...+-|.|||++|+.|++|+++.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 35678888999999999999999988764
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=60.80 E-value=3.9 Score=37.12 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=25.7
Q ss_pred EEEEeccCccceeecCCChHHHHHHHHhCce
Q 007603 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTKCR 57 (596)
Q Consensus 27 ~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~ 57 (596)
+.+-+-.+..|.||||.|.+++.||--+..-
T Consensus 35 i~i~i~ged~glLIGK~G~TL~ALQyL~~~~ 65 (152)
T 2pt7_G 35 LLIDIDGEDSALLIGEKGYRYKALSYLLFNW 65 (152)
T ss_dssp EEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH
T ss_pred EEEEEecCCcceEECCCCcchHHHHHHHHHH
Confidence 4555678899999999999999999887543
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=45.15 E-value=9 Score=34.70 Aligned_cols=67 Identities=10% Similarity=0.040 Sum_probs=46.0
Q ss_pred EEEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhcc
Q 007603 367 AVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (596)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (596)
+..+.+-.+..|.||||.|.+++.||-.+..-+ .+. ..-.-.+-|-|=.+.-+..+..+..++.+..
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~v--n~~-------~~~~V~LDve~YRerReetL~~lA~~~A~kV 100 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWI--HPT-------YGYSIRLEISTFLQNQEKVMDTQLQSVIMTV 100 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHH--HHH-------HSCEEEEEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHh--hhc-------CCceEEEEhHHhHHHHHHHHHHHHHHHHHHH
Confidence 566777788999999999999999987763322 110 0112345566667777777777777776544
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=33.07 E-value=14 Score=30.37 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=21.9
Q ss_pred EEEEEeccccccccccCCCchhHHHHH
Q 007603 367 AVSILVGADFVGCLTGSGSSAVSEMED 393 (596)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~ 393 (596)
.+++.|-...-|.|||++|+.|++|+.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 566777777889999999998888754
No 91
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=31.63 E-value=17 Score=35.40 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=25.0
Q ss_pred EEEEeccCccceeecCCChHHHHHHHHhC
Q 007603 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (596)
Q Consensus 27 ~rilvP~~~vg~IIGk~G~~Ik~Ir~eTg 55 (596)
.+|.+...+-|.|||++|+.|++|+++..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l~ 74 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLVQ 74 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 56778889999999999999999887654
No 92
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.72 E-value=19 Score=34.26 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.6
Q ss_pred EEEEeccCccceeecCCChHHHHHHHHh
Q 007603 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (596)
Q Consensus 27 ~rilvP~~~vg~IIGk~G~~Ik~Ir~eT 54 (596)
.+|.+...+-|.|||++|+.|++|+++.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4677788889999999999999987654
No 93
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=29.92 E-value=75 Score=30.48 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=43.9
Q ss_pred EEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcCCHHHHHHHHHHH
Q 007603 368 VSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV 434 (596)
Q Consensus 368 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I 434 (596)
.-+.++...+.+++|+++..++.|.+.+++.|-+-. +-.|=|.++......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHH
Confidence 345889999999999999999999999999998843 45566888876555444444
No 94
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=29.53 E-value=22 Score=34.59 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=25.6
Q ss_pred EEEEEeccCccceeecCCChHHHHHHHHhC
Q 007603 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (596)
Q Consensus 26 ~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTg 55 (596)
..+|.+....-|.|||++|+.|++|+++..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 77 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFLQ 77 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHHH
Confidence 467778889999999999999999888653
No 95
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.85 E-value=17 Score=35.03 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=25.4
Q ss_pred EEEEEeccCccceeecCCChHHHHHHHHhC
Q 007603 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (596)
Q Consensus 26 ~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTg 55 (596)
-.+|.+...+-|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 356788889999999999999999887653
No 96
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=27.67 E-value=81 Score=23.98 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhhc
Q 007603 413 QNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (596)
Q Consensus 413 ~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (596)
.++-.|.|+|-|++|.+-+..=.++|.+.
T Consensus 39 gndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 39 GNDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp SSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 45678999999999999887777888753
No 97
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=25.48 E-value=20 Score=34.63 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=26.7
Q ss_pred EEEEeccCccceeecCCChHHHHHHHHhCceEE
Q 007603 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIH 59 (596)
Q Consensus 27 ~rilvP~~~vg~IIGk~G~~Ik~Ir~eTga~I~ 59 (596)
+.|-+.....|.||||.|.+++.||.-+..-++
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 344456778999999999999999999885543
No 98
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=24.16 E-value=19 Score=34.25 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=22.8
Q ss_pred EEEEeccCccceeecCCChHHHHHHHHh
Q 007603 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (596)
Q Consensus 27 ~rilvP~~~vg~IIGk~G~~Ik~Ir~eT 54 (596)
.+|.+....-|.|||++|+.|++|+++.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l 90 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVV 90 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4566677888999999999999887654
No 99
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.91 E-value=21 Score=34.83 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=25.5
Q ss_pred EEEEEeccCccceeecCCChHHHHHHHHhC
Q 007603 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (596)
Q Consensus 26 ~~rilvP~~~vg~IIGk~G~~Ik~Ir~eTg 55 (596)
..+|.+...+-|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHHH
Confidence 456777888999999999999999988754
No 100
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=22.87 E-value=1.7e+02 Score=27.92 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=44.5
Q ss_pred EEEEeccccccccccCCCchhHHHHHHhCCeEEEeCCCcccccCCCCCcEEEEcC-CHHHHHHHHHHHHH
Q 007603 368 VSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISG-EYKNVQNALSEVVG 436 (596)
Q Consensus 368 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G-~~~~V~~A~~~I~~ 436 (596)
.-+.++...+.+++|++|..++.|.+.+++.|-+-. +..|-|.+ ++..+..+...|..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~~~~~~~~~~ai~~ 208 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPNEDLEAIAVMAIKI 208 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCCHHHHHHHHHHHHH
Confidence 456889999999999999999999989999998843 45666775 55555555555544
No 101
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=22.40 E-value=35 Score=33.98 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=28.0
Q ss_pred ceEEEEEecc-ccccccccCCCchhHHHHH--------HhCCeEEE
Q 007603 365 AVAVSILVGA-DFVGCLTGSGSSAVSEMED--------VTGTDIKL 401 (596)
Q Consensus 365 ~~t~~l~VP~-~~vG~IIGkgG~~Ik~I~~--------~TGa~I~I 401 (596)
.+...+.|.. ++-+.|||++|+.||+|.. ..|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4677888876 5788999999999998754 45555544
No 102
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=22.01 E-value=22 Score=34.48 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.0
Q ss_pred EEEEeccCccceeecCCChHHHHHHHHh
Q 007603 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (596)
Q Consensus 27 ~rilvP~~~vg~IIGk~G~~Ik~Ir~eT 54 (596)
.+|.+....-|.|||++|+.|++|+++.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~L 91 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKVV 91 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4566677888999999999999887654
No 103
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=20.98 E-value=32 Score=33.48 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=22.9
Q ss_pred EEEEeccCccceeecCCChHHHHHHHHh
Q 007603 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (596)
Q Consensus 27 ~rilvP~~~vg~IIGk~G~~Ik~Ir~eT 54 (596)
++|.+....-|.|||++|+.|++|+++.
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~L 91 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREEL 91 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHHH
Confidence 3456677888999999999999998764
Done!