Query 007604
Match_columns 596
No_of_seqs 201 out of 2403
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:55:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 4.1E-31 1.4E-35 286.8 30.1 442 30-563 10-476 (491)
2 2xut_A Proton/peptide symporte 100.0 3.7E-30 1.3E-34 281.7 24.2 472 31-566 10-510 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.2E-27 4.2E-32 255.8 26.7 398 32-559 27-434 (451)
4 4gc0_A D-xylose-proton symport 100.0 2E-27 6.7E-32 257.6 22.0 401 68-567 54-471 (491)
5 3o7q_A L-fucose-proton symport 99.9 2.1E-25 7.2E-30 237.7 33.0 356 29-519 22-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 1.7E-23 5.7E-28 218.6 18.2 345 36-517 3-351 (375)
7 2cfq_A Lactose permease; trans 99.9 4.4E-23 1.5E-27 219.2 12.5 390 33-560 7-401 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.7E-12 5.7E-17 138.1 15.7 179 32-238 251-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 3.2E-12 1.1E-16 135.5 16.6 168 33-234 258-427 (438)
10 2cfq_A Lactose permease; trans 99.3 9.1E-12 3.1E-16 131.8 13.4 177 33-240 220-400 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 8.3E-11 2.8E-15 126.7 13.7 185 35-242 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 2.3E-08 8E-13 107.3 20.5 183 35-243 278-466 (491)
13 2gfp_A EMRD, multidrug resista 98.9 6.2E-10 2.1E-14 115.4 3.5 162 33-226 199-363 (375)
14 2xut_A Proton/peptide symporte 98.4 1.3E-06 4.5E-11 94.5 13.1 137 374-557 57-197 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=4.1e-31 Score=286.79 Aligned_cols=442 Identities=16% Similarity=0.249 Sum_probs=296.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCChhhhhhHHHHHHHHHHHhhhhhHHHhhh-hcchhHHH
Q 007604 30 GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDK-----LHHGTVKSANNVTNWGGTIWVTPIFGAGVAEA-YLGRYWTF 103 (596)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grk~~~ 103 (596)
+++|.++.+++..++..+.+|++..+++.|++++ +|.+..+.+++.+.+.++..++++++|+++|| + |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~ 88 (491)
T 4aps_A 10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAV 88 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHH
Confidence 3457888899999999999999999999999988 99999999999999999999999999999999 8 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhh
Q 007604 104 VIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKE 183 (596)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 183 (596)
.++.++..++.++++++. +...++++|++.|+|.+...++..++++|++|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 141 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALPF------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD--- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHSCC------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---
T ss_pred HHHHHHHHHHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---
Confidence 999999999998887653 67788999999999999999999999999999875
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceecc---CCCC-ChhHHHHHH
Q 007604 184 KAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHK---KPAG-SPFTRMAKV 259 (596)
Q Consensus 184 ~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~ 259 (596)
++|+.++++++...++|..++|.+++++.+..|||++|++.++..+++++.++...++...+ ++++ ...++..+.
T Consensus 142 -~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
T 4aps_A 142 -RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL 220 (491)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHH
T ss_pred -ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHH
Confidence 24788899999999999999999999999889999999998876666665554433322111 1111 111111111
Q ss_pred HHH--------------HHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhh
Q 007604 260 IVA--------------AIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVE 325 (596)
Q Consensus 260 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 325 (596)
... ......... .+.......... .... ..... .++... ....
T Consensus 221 ~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~---------~~~~~---------~~~~~~-~~~~ 277 (491)
T 4aps_A 221 LVKVSLAVAGFIAIIVVMNLVGWNSL-PAYINLLTIVAI---AIPV---------FYFAW---------MISSVK-VTST 277 (491)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHSSCCT-THHHHHHHHHHH---HHHH---------HHHHH---------HC---------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccc-ccchhhhhHHHH---HHHH---------HHHHH---------Hhhccc-ccHH
Confidence 000 000110000 000000000000 0000 00000 000000 0011
Q ss_pred hhhhHHhHHHHHHHhhhhhhhhhcccceeeeeecc-ccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccC
Q 007604 326 ETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTT-LDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTK 404 (596)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~ 404 (596)
++++......+......++..+.+....+..+... .+.+ ....+.......+..+++.++.+++.||++||.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~-- 350 (491)
T 4aps_A 278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ-- 350 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC--
Confidence 22333333344444455555555444432221111 1111 134566778888889999999999999888874
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 007604 405 NPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQ 484 (596)
Q Consensus 405 ~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~ 484 (596)
......+.++.++.+++++..........+ ....+.+++++.+++.+++.+...+..++++.|.
T Consensus 351 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 414 (491)
T 4aps_A 351 ----PSSPTKFAVGLMFAGLSFLLMAIPGALYGT------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL 414 (491)
T ss_dssp ------CHHHHHHHHHHHHHHHTTTHHHHHHCCC------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHHHHhcCC------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 244566778888888887666554311000 0124667778888999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 007604 485 APESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYV 563 (596)
Q Consensus 485 ~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 563 (596)
+|++.||+++|+.+....+|..+++.+.+.+.+ .++...|+.++++.++..++.+++.++.+
T Consensus 415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887753 12345677777777777776666655544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=3.7e-30 Score=281.73 Aligned_cols=472 Identities=20% Similarity=0.321 Sum_probs=288.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHH
Q 007604 31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLH------HGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFV 104 (596)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~ 104 (596)
++|.++.+++..++..+++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34567778888999999999999999999999999 999999999999999999999999999999669999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhh
Q 007604 105 IAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK 184 (596)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 184 (596)
++.++..++.++++++. .+...++++|++.|++.+...+...+++.|++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---- 142 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT----
T ss_pred HHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc----
Confidence 99999999988887752 156778899999999999999999999999999886
Q ss_pred hhhhh---hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHH
Q 007604 185 AHKLS---FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIV 261 (596)
Q Consensus 185 ~~r~~---~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (596)
|++ .+++++...++|.+++|.+++++.+..||+++|++.++..+++.+.++..+++.+++++++++..+..+.+.
T Consensus 143 --r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (524)
T 2xut_A 143 --KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR 220 (524)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence 654 455589999999999999999998888999999988877666666555544443333332222222222222
Q ss_pred HHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccC-----------------Ccchhh--hhhhhhhcCCCCCcccccch
Q 007604 262 AAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGS-----------------TQNLRF--FNKAAVKTGATNPWILCSVS 322 (596)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~ 322 (596)
...++++... ........................ .+...+ ++..+. .....
T Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 290 (524)
T 2xut_A 221 SALLTKVEGK-GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK---------SHPDA 290 (524)
T ss_dssp ------CTTH-HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCC---------SCCSS
T ss_pred HHHhhhhccc-CccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhc---------cccHh
Confidence 2222211100 000000000000000000000000 000000 110000 00111
Q ss_pred hhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcc
Q 007604 323 QVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRW 402 (596)
Q Consensus 323 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~ 402 (596)
+.+++|..+..+........++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+..+|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERM 366 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc
Confidence 2233444444444444455555555555554433322222110 0 23455566677788888888888653433443
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007604 403 TKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFY 482 (596)
Q Consensus 403 ~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~ 482 (596)
.++ .++.+.+.+|+++.+++++...+.+.... .....+.+++++.+++.+++++...+..++++.
T Consensus 367 ~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 431 (524)
T 2xut_A 367 GVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD------------GGSALSIFWQILPYALLTFGEVLVSATGLEFAY 431 (524)
T ss_dssp -------CCHHHHHTHHHHHHHHHHTTTTTTTTTT------------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred CCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 34556677888888887766654321100 001245667778889999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCcccc-CCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604 483 DQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILN-NLNVCHLDYYYAFFAILNVLNFVFFLVVAKF 561 (596)
Q Consensus 483 ~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 561 (596)
|.+|++.||+++|++++...+|+.+++.+.+.+.+.++ .+|..+ +.+. ....|++.+++.+++.++++++.++
T Consensus 432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998864321 123211 1111 1223777777777777776666665
Q ss_pred ccccc
Q 007604 562 YVYKA 566 (596)
Q Consensus 562 ~~~~~ 566 (596)
+++++
T Consensus 506 ~~~~~ 510 (524)
T 2xut_A 506 YQMQD 510 (524)
T ss_dssp -----
T ss_pred hccch
Confidence 54433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=1.2e-27 Score=255.83 Aligned_cols=398 Identities=9% Similarity=0.022 Sum_probs=258.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604 32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL 111 (596)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~ 111 (596)
++.++.+++..++..+..+.....++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 4455556666666666655555666554 4567 9999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHH----HhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604 112 MGMIVLAL----SVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK 187 (596)
Q Consensus 112 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 187 (596)
++.+++++ +. +...++++|++.|++.+...++..+++.|.+|+++ |
T Consensus 104 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATS------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHCHHHHS------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHhhhhccc------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 99999988 53 66788899999999999999999999999999875 9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHh
Q 007604 188 LSFFNWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRK 266 (596)
Q Consensus 188 ~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (596)
++++++.+...++|.+++|.+++++.+..| ||++|++.++..++..+..+...++.+++....+. +
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------ 220 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------ 220 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------
Confidence 999999999999999999999999888888 99999998876655444433333322111100000 0
Q ss_pred cCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHH-HHHHhhhhhh
Q 007604 267 RNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIP-ILVATFVPST 345 (596)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~-~~~~~~~~~~ 345 (596)
+...+. . .+. .++...+...++ . ...+..+.+.+..... .++....++.
T Consensus 221 ---~~~~~~----~-~~~--~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
T 1pw4_A 221 ---EYKNDY----P-DDY--NEKAEQELTAKQ---I-----------------FMQYVLPNKLLWYIAIANVFVYLLRYG 270 (451)
T ss_dssp ---TTCCC--------------------CCTH---H-----------------HHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhcccc----c-ccc--hhhhhccccccc---c-----------------hHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 000 000000000000 0 0000011122222211 1122222222
Q ss_pred hhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHh--hhcccCCCCCCChhHHHHHHHHHHH
Q 007604 346 MLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRI--TRRWTKNPRGITLLQRMGIGLVIHI 423 (596)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l--~~r~~~~~~~~~~~~~l~~g~~l~~ 423 (596)
.....+.+. .+..+.+ ....+.......++.+++.++..++.||+ ++| +.+.++.++..
T Consensus 271 ~~~~~~~~~-~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~ 331 (451)
T 1pw4_A 271 ILDWSPTYL-KEVKHFA-------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHB-TTBSCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHH
Confidence 222222221 1101111 11223445566677777788888877776 444 23444444444
Q ss_pred -HHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHh
Q 007604 424 -IIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLG 502 (596)
Q Consensus 424 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 502 (596)
++++...+.. ..+.+.++...++.|++.+...+..+.+..|.+|++.||+++|+.+....
T Consensus 332 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 392 (451)
T 1pw4_A 332 TIATIVYWMNP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHTTSCC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 4444433321 12445566667888888888888889999999999999999999999999
Q ss_pred H-HHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 007604 503 V-GNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVA 559 (596)
Q Consensus 503 i-g~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 559 (596)
+ |..+++.+.+.+.+.. ++...|++.+++.+++.++.+...
T Consensus 393 ~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 393 LGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999887522 345677877777777766665543
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=2e-27 Score=257.64 Aligned_cols=401 Identities=13% Similarity=0.087 Sum_probs=229.9
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchh
Q 007604 68 TVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQL 147 (596)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (596)
..+.+++.+++.++..+|++++|+++||+ |||++++++.+++.++.++++++......... ...-....-.+.
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~------~~~~~~~~a~~~ 126 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP------DNTVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS------SSSCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc------hhHHHHHHhhhH
Confidence 45678899999999999999999999998 99999999999999999998854210000000 000000011378
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc--------cccch
Q 007604 148 GTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD--------DVGWA 219 (596)
Q Consensus 148 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~--------~~g~~ 219 (596)
..++++|+++|+|.|+..+..+++++|..|++. |+...++.+.+..+|..+++.++..+.. ..+||
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 899999999999999999999999999999986 9999999999999999988877655432 23467
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCc-
Q 007604 220 LGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQ- 298 (596)
Q Consensus 220 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (596)
..+.+..+..++.++..+.. |+ +|+++...++.+++.+...+....+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~-pe-------------------------------Sp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 201 YMFASECIPALLFLMLLYTV-PE-------------------------------SPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHTTHHHHHHHHHHGGGS-CC-------------------------------CHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhhcC-CC-------------------------------ChHHHHHcCchhHHHHhHHHhcCCch
Confidence 66665555444433332221 11 1111111111111100000000000
Q ss_pred -------chhhhhhhhhhcCCCCCcccccchhhhhhhhHHh-HHHHHHHhhhhhhhhhcccceeeeeeccccccCCCccc
Q 007604 299 -------NLRFFNKAAVKTGATNPWILCSVSQVEETTQMLA-MIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFK 370 (596)
Q Consensus 299 -------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 370 (596)
.....+..+... ........+.... .....+...........+.+.... ..+ ...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~ 311 (491)
T 4gc0_A 249 ATQAVQEIKHSLDHGRKTG---------GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-------TLG-AST 311 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHT---------THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSS-CCH
T ss_pred hHHHHHHHHHHHHhhhhhh---------hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-------hcC-CCc
Confidence 000000000000 0000001111111 111111111100111111111111 000 001
Q ss_pred ccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCC
Q 007604 371 IPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQ 450 (596)
Q Consensus 371 ~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (596)
...........+..+++..+...+.||++|| +.+..+...++++++..+.....
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~--------------- 365 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT--------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc---------------
Confidence 1112223444566667777778888888888 33555666666666555433210
Q ss_pred cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCcccc
Q 007604 451 QVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILN 530 (596)
Q Consensus 451 ~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~ 530 (596)
...+...++...++.........|..+.+..|.+|++.|++++|+.+..+++++++++.+.+.+.... |...
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~ 437 (491)
T 4gc0_A 366 -QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVA 437 (491)
T ss_dssp -TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH
T ss_pred -ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh
Confidence 01122222222233333334455778899999999999999999999999999999999988775321 1100
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 007604 531 NLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAE 567 (596)
Q Consensus 531 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~ 567 (596)
..+....|++++++++++.++.+++.+|+++|+.
T Consensus 438 ---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 438 ---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 1122356888899999999988888899888876
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=2.1e-25 Score=237.70 Aligned_cols=356 Identities=10% Similarity=0.052 Sum_probs=238.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH
Q 007604 29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF 108 (596)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~ 108 (596)
++.++.+..+.+..++..+........++ ++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 34455566666666666666554545554 57779999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHH---HHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhh
Q 007604 109 FYLMGMIVL---ALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKA 185 (596)
Q Consensus 109 ~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 185 (596)
+.+++.+++ ..+. +.+.++++|++.|++.+...+...+++.|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM------------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----- 150 (438)
T ss_dssp HHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT-----
T ss_pred HHHHHHHHHHhccccc------------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh-----
Confidence 999999888 4432 78889999999999999999999999999999986
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhcc-cccc-------------------------chhhhHHHHHHHHHHHHHHHhc
Q 007604 186 HKLSFFNWWMFSIFFGTLLGNTVLVYIQ-DDVG-------------------------WALGYGLPALGLAIAIAIFLAG 239 (596)
Q Consensus 186 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~ 239 (596)
|+++.++.+...++|..++|.+++++. +..+ ||+.|++.++..++..+.++..
T Consensus 151 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 151 -GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 5544 8999977665544444333332
Q ss_pred C-CceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCccc
Q 007604 240 T-PFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWIL 318 (596)
Q Consensus 240 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (596)
+ ++.++++++++... .....+
T Consensus 230 ~~p~~~~~~~~~~~~~------------------------------------------~~~~~~---------------- 251 (438)
T 3o7q_A 230 KFPALQSDNHSDAKQG------------------------------------------SFSASL---------------- 251 (438)
T ss_dssp CCCCCTTTCCCCSSTT------------------------------------------SHHHHH----------------
T ss_pred cCCccccccccccccc------------------------------------------chhhhH----------------
Confidence 1 11111100000000 000000
Q ss_pred ccchhhhhhhhHHhH-HHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHH
Q 007604 319 CSVSQVEETTQMLAM-IPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVR 397 (596)
Q Consensus 319 ~~~~~v~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 397 (596)
.+..+.+.+... +..++............+.++..+..+.+ ....+.......+..+++.++..++.||
T Consensus 252 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~r 321 (438)
T 3o7q_A 252 ---SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT-------AGFAANYLTGTMVCFFIGRFTGTWLISR 321 (438)
T ss_dssp ---HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111111 11112222222222222222121111111 1122344555666777777888887777
Q ss_pred hhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhh
Q 007604 398 ITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAK 477 (596)
Q Consensus 398 l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~ 477 (596)
++|| +.+.++.++.+++++...+. .+. +.+...++.+++.+...|..
T Consensus 322 ~~~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~g~~~~~~~~~~ 368 (438)
T 3o7q_A 322 FAPH-----------KVLAAYALIAMALCLISAFA---------------------GGH-VGLIALTLCSAFMSIQYPTI 368 (438)
T ss_dssp SCHH-----------HHHHHHHHHHHHHHHHHHHC---------------------CHH-HHHHHHHHHHHHHTTHHHHH
T ss_pred hcch-----------HHHHHHHHHHHHHHHHHHHc---------------------CCc-HHHHHHHHHHHHHHHHHHHH
Confidence 7666 44666666666666555442 122 23444578888888899999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccc
Q 007604 478 IEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDIT 519 (596)
Q Consensus 478 ~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~ 519 (596)
+++..|..|++ ++++.++.. .+.+|..+++.+.+.+.+..
T Consensus 369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99999999977 999999887 67799999999999987643
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=1.7e-23 Score=218.64 Aligned_cols=345 Identities=11% Similarity=0.061 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHH
Q 007604 36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMI 115 (596)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~ 115 (596)
+.+++..++..+........++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 34455556666666655666665 4568999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 007604 116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWM 195 (596)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 195 (596)
+...+. +...+++.|++.|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 81 ~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 130 (375)
T 2gfp_A 81 VAVTTS------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN 130 (375)
T ss_dssp HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred HHHHhc------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence 988875 78889999999999999999999999999999886 999999999
Q ss_pred HHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCc
Q 007604 196 FSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDP 275 (596)
Q Consensus 196 ~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (596)
...++|..++|.+++++.+..|||+.|++.++..++..+......|+.++++++++
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 186 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT------------------------ 186 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc------------------------
Confidence 99999999999999999988899999987776554443322222221111000000
Q ss_pred hhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHH-HHHhhhhhhhhhccccee
Q 007604 276 QELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPI-LVATFVPSTMLAQINTLF 354 (596)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 354 (596)
+..+ .+ .+..+.|.+...... .+............ +.+
T Consensus 187 -------------------~~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 225 (375)
T 2gfp_A 187 -------------------RLLT----------------SY-----KTLFGNSGFNCYLLMLIGGLAGIAAFEACS-GVL 225 (375)
T ss_dssp -------------------CTTT----------------CS-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SCS
T ss_pred -------------------cHHH----------------HH-----HHHhcCcchHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 0000 00 011111222222221 12122222222211 222
Q ss_pred eeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHH-HHHHHH--HHHH
Q 007604 355 VKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVI-HIIIMV--IASF 431 (596)
Q Consensus 355 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l-~~~~~~--~~~~ 431 (596)
..+..+.+ ....+.......++.+++.++.+++.||..+ ++..+..+ ...+.. ....
T Consensus 226 ~~~~~g~~-------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-------------~~~~~~~~~~~~~~~~~~~~~ 285 (375)
T 2gfp_A 226 MGAVLGLS-------SMTVSILFILPIPAAFFGAWFAGRPNKRFST-------------LMWQSVICCLLAGLLMWIPDW 285 (375)
T ss_dssp SHHHHHHH-------HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-------------HHHHHHHHHHHTSSSSSHHHH
T ss_pred HHHHhCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhh
Confidence 11111111 1112333444555556666555554333322 23333333 222221 1111
Q ss_pred HhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHH
Q 007604 432 TERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFL 511 (596)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~ 511 (596)
.. ..+.+.++...++.+++.+...+....+..|..| +.||+++|+.+..+.+|..+++.+
T Consensus 286 ~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 286 FG-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp HH-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred hc-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 10 1244556667788899999999999999999999 899999999999999999999998
Q ss_pred Hhhhhc
Q 007604 512 LSTVSD 517 (596)
Q Consensus 512 ~~~i~~ 517 (596)
.+.+.+
T Consensus 346 ~g~l~~ 351 (375)
T 2gfp_A 346 SAMLPQ 351 (375)
T ss_dssp CTHHHH
T ss_pred HHHHhc
Confidence 887753
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.88 E-value=4.4e-23 Score=219.24 Aligned_cols=390 Identities=8% Similarity=-0.027 Sum_probs=223.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604 33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM 112 (596)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i 112 (596)
|..+.+....++..+.+..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ |||++++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666666666666666778899999999999999999999999999999999999999998 999999988877654
Q ss_pred HHHHH---HHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604 113 GMIVL---ALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS 189 (596)
Q Consensus 113 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 189 (596)
+.... ..+.. ....+..++++.+++.+...+...+...+..++.. ++++.
T Consensus 86 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPL-----------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNF 138 (417)
T ss_dssp CHHHHHHHTHHHH-----------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTC
T ss_pred HHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhccc
Confidence 32211 11110 00012234445455444444444444444433221 13666
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCC
Q 007604 190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNV 269 (596)
Q Consensus 190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (596)
.++..+...++|..++|.+++++.+ .+|+..|++.++..++..+..+..+++.+ ++.+.
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------- 197 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAP---SSATV----------------- 197 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCS---CSSCS-----------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccc---ccccc-----------------
Confidence 6777777778999999999998876 68999998766543333222211111100 00000
Q ss_pred CCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhh-h
Q 007604 270 PLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTML-A 348 (596)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~-~ 348 (596)
++ .. +... + +...+ +.. +..+.+.+.......+.....+..+ +
T Consensus 198 --~~-~~-----------~~~~---~-~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2cfq_A 198 --AN-AV-----------GANH---S-AFSLK--LAL----------------ELFRQPKLWFLSLYVIGVSCTYDVFDQ 241 (417)
T ss_dssp --SS-SS-----------SSCC---C-CCCHH--HHH----------------HHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cc-cc-----------cccc---c-cccHH--HHH----------------HHhcCCchhhHHHHHHHHHHHHHHHHH
Confidence 00 00 0000 0 00000 000 0001112222111111111112222 2
Q ss_pred cccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 007604 349 QINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVI 428 (596)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~ 428 (596)
+.+.++..+ .. ....+ ....+....++.+..+++..+..++.||++|| +.+.++.++.+++++.
T Consensus 242 ~~~~~~~~~-~~-~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~ 305 (417)
T 2cfq_A 242 QFANFFTSF-FA-TGEQG---TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHT-SS-SHHHH---THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-Hh-ccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHH
Confidence 222222111 00 00000 00012233444555666677788888777776 3355666666666555
Q ss_pred HHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHH-HHHHHhHHHHH
Q 007604 429 ASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFL 507 (596)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~l 507 (596)
..+. .+.+.+++..++.+++.....+..+.++.|.+|++.||++.++ ++..+++|+.+
T Consensus 306 ~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 306 SSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp HTTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 4432 1334455555666777767777778999999999999999999 58888999999
Q ss_pred HhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604 508 SSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAK 560 (596)
Q Consensus 508 g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 560 (596)
++.+.+.+.+.. ++...|.+.+++.+++.++.+...+
T Consensus 365 gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 365 MSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999876421 3455677777777777665554433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.41 E-value=1.7e-12 Score=138.14 Aligned_cols=179 Identities=13% Similarity=0.101 Sum_probs=148.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhc-chhHHHHHHHHHH
Q 007604 32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYL-GRYWTFVIAFFFY 110 (596)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grk~~~~~~~~~~ 110 (596)
.|.++..++..++..+.++++..+++.|+++.+|.++.+.+++.+...++..++.+++|+++||+. |||+.+.++..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 356777888888888888999999999999889999999999999999999999999999999942 8888887776665
Q ss_pred H-HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604 111 L-MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS 189 (596)
Q Consensus 111 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 189 (596)
. ++.+++.... +.+...+.+..++.|++.+...+...++..|.+|+++ |++
T Consensus 331 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 382 (451)
T ss_dssp HHHHHHHTTSCC----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHH
T ss_pred HHHHHHHHHHhc----------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhh
Confidence 5 4444443221 0145566677778899888888888999999999886 999
Q ss_pred hHHHHHHHHHH-HHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604 190 FFNWWMFSIFF-GTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA 238 (596)
Q Consensus 190 ~~~~~~~~~~i-g~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 238 (596)
+.++.+...++ |..++|.+.|++.+..||+..|++.++..+++.+..+.
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999899999999888776666555444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=3.2e-12 Score=135.45 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604 33 RACSFVVVYEVFERMAYHGISSNLVMY-LTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL 111 (596)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~ 111 (596)
|.++...+..++.....+++..+++.| +++.+|.+..+.+...+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456666777777777788888999999 8888899999999999999999999999999999998 99999999998888
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604 112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF 191 (596)
Q Consensus 112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 191 (596)
++.++..... +... .+..++.|++.+...|...++..|.+|++ ++.+.
T Consensus 337 ~~~~~~~~~~------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGS 384 (438)
T ss_dssp HHHHHHHHCC------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHH
T ss_pred HHHHHHHHcC------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchh
Confidence 8877766542 3333 33457788999999999999999999854 55566
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHH
Q 007604 192 NWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIA 234 (596)
Q Consensus 192 ~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~ 234 (596)
++.. ...+|..++|.+.|++.+..| ++..|++.+++.++..+
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 6555 557999999999999999888 99999887655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=9.1e-12 Score=131.78 Aligned_cols=177 Identities=10% Similarity=-0.005 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---ChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH
Q 007604 33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHH---GTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF 109 (596)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~ 109 (596)
|..+...+..++....++....+++.|+.+.++. +..+.+...+...++..++.+++|+++||+ |||+++.++..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 3444444443444444455556788888766653 234456677777778889999999999998 999999988877
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604 110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS 189 (596)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 189 (596)
.+++.++.++.. +...+.+..++.+++.+...+....+.+|.+|++. |++
T Consensus 299 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~ 348 (417)
T 2cfq_A 299 MSVRIIGSSFAT------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT 348 (417)
T ss_dssp HHHHHHHHTTCC------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred HHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence 777655554321 44455556666677766666777889999999875 999
Q ss_pred hHHH-HHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcC
Q 007604 190 FFNW-WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGT 240 (596)
Q Consensus 190 ~~~~-~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 240 (596)
+.++ ++....+|+.++|.++|++.+..|++..|.+.++..+++.+..+...
T Consensus 349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 9888 47788899999999999998888888888887776666665544433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.20 E-value=8.3e-11 Score=126.72 Aligned_cols=185 Identities=11% Similarity=0.056 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHH-----HHHHH
Q 007604 35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFV-----IAFFF 109 (596)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~-----~~~~~ 109 (596)
.+.+.+..++....+.....+++.|..+.++.+..+.+...+...++..++.++.|++.||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44555555566666667778889999988898888889999999999999999999999998 9986654 66666
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604 110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS 189 (596)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 189 (596)
..++.+++........ ...+.+...+.+..++.|++.+...+...++..|.+|++. |++
T Consensus 364 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSS
T ss_pred HHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence 6666665555421100 0011245566677888999999999999999999999997 999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 007604 190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF 242 (596)
Q Consensus 190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 242 (596)
+.++.+...++|..+++.+.+++.+ .++...|++.++..+++.+..+...++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888875 466777777666655555555554444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.97 E-value=2.3e-08 Score=107.34 Aligned_cols=183 Identities=10% Similarity=0.030 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604 35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM 114 (596)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~ 114 (596)
........++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence 33333444444443333334444556667888888888777888899999999999999998 99999999988888877
Q ss_pred HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604 115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW 194 (596)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 194 (596)
+.++...... .+..........+..+++ ....|..+.+.+|.+|.+. |+++.++.
T Consensus 357 ~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~ 411 (491)
T 4gc0_A 357 FSLGTAFYTQ------------------APGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIA 411 (491)
T ss_dssp HHHHHHHHTT------------------CCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHH
T ss_pred HHHHHHHhcc------------------cchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence 7665543211 001122222222222333 2345777899999999997 99999999
Q ss_pred HHHHHHHHHHhhhhhhhccc------cccchhhhHHHHHHHHHHHHHHHhcCCce
Q 007604 195 MFSIFFGTLLGNTVLVYIQD------DVGWALGYGLPALGLAIAIAIFLAGTPFY 243 (596)
Q Consensus 195 ~~~~~ig~~l~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 243 (596)
+...++|+.+++.+.+.+.+ ..++...|++.++..+++.+..++..|+.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 99999999988877766543 23455677777666666665555555544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.87 E-value=6.2e-10 Score=115.39 Aligned_cols=162 Identities=9% Similarity=-0.012 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH-HH
Q 007604 33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF-YL 111 (596)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~-~~ 111 (596)
|.++...+..++.....++...+++.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566677777777888888888999999988999999999999999999999999999999998 883 2333322 22
Q ss_pred HHHH--HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604 112 MGMI--VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS 189 (596)
Q Consensus 112 i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 189 (596)
.+.. ...... +.+.+.+++..++.|++.+...+...++..|.+| ++ |++
T Consensus 276 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~ 326 (375)
T 2gfp_A 276 AGLLMWIPDWFG----------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGT 326 (375)
T ss_dssp TSSSSSHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHH
T ss_pred HHHHHHHHhhhc----------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cch
Confidence 2222 111110 0145556677788899999999999999999998 43 999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHH
Q 007604 190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPA 226 (596)
Q Consensus 190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~ 226 (596)
+.++.+...++|..++|.+.+.+.+..+|+..+.+.+
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999999887777877776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.42 E-value=1.3e-06 Score=94.54 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=101.1
Q ss_pred cccccchhHHHHHHHHHHhHHHHHh-hhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcc
Q 007604 374 ASLTGFVTLSMLVCVVLYDRCFVRI-TRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 452 (596)
Q Consensus 374 ~~~~~~~~~~~~i~~~l~~~~~~~l-~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (596)
+.+.+...++.+++.++.+++.||+ +|| +.+.++.++.+++.+...+..
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 106 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIFE------------------- 106 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHTS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 4455666777778888888888877 766 446777777777776666531
Q ss_pred eehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHH---HHHHHhHHHHHHhHHHhhhhccccccCCCCccc
Q 007604 453 PLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY---SMTTLGVGNFLSSFLLSTVSDITKRHGHKGWIL 529 (596)
Q Consensus 453 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~ 529 (596)
.+.+.+++..++.|++.+...+...+++.|.+|++.|++..+. ++....+|..+++.+.+.+.+.
T Consensus 107 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------- 174 (524)
T 2xut_A 107 -HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN----------- 174 (524)
T ss_dssp -SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-----------
T ss_pred -ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 1556677778899999999999999999999999999877666 8888899999999888777531
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHH
Q 007604 530 NNLNVCHLDYYYAFFAILNVLNFVFFLV 557 (596)
Q Consensus 530 ~~~~~~~~~~~f~~~~~~~~v~~~~~~~ 557 (596)
.++.+.|++.+++.++..++++.
T Consensus 175 -----~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 175 -----FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 12456677766665555444433
Done!