Query 007605
Match_columns 596
No_of_seqs 221 out of 1059
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 12:53:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02491 carotenoid 9,10(9',10 100.0 2E-142 4E-147 1185.9 56.8 536 60-596 10-545 (545)
2 PLN02258 9-cis-epoxycarotenoid 100.0 2E-137 4E-142 1149.7 55.5 502 69-594 76-590 (590)
3 COG3670 Lignostilbene-alpha,be 100.0 2E-117 5E-122 932.2 36.2 457 100-588 20-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 7E-111 1E-115 928.9 36.7 461 103-587 1-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 1E-104 2E-109 894.9 46.6 459 103-587 61-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 3.2E-81 6.9E-86 688.7 27.3 496 71-594 72-582 (582)
7 KOG1285 Beta, beta-carotene 15 100.0 7.5E-30 1.6E-34 282.1 18.1 344 119-475 37-414 (582)
8 PF06433 Me-amine-dh_H: Methyl 68.1 1.8E+02 0.004 31.4 19.2 246 246-575 19-290 (342)
9 PF10282 Lactonase: Lactonase, 52.5 98 0.0021 32.9 10.2 99 234-338 48-163 (345)
10 TIGR02658 TTQ_MADH_Hv methylam 50.0 3.7E+02 0.008 29.2 25.6 121 244-396 27-157 (352)
11 PF02239 Cytochrom_D1: Cytochr 49.1 80 0.0017 34.3 8.9 75 465-573 45-119 (369)
12 TIGR02276 beta_rpt_yvtn 40-res 27.0 1.7E+02 0.0037 20.3 4.9 27 551-580 13-39 (42)
13 COG3823 Glutamine cyclotransfe 26.0 48 0.001 33.6 2.2 36 230-268 96-132 (262)
14 PF02736 Myosin_N: Myosin N-te 21.7 55 0.0012 24.1 1.3 30 523-559 4-33 (42)
No 1
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=2e-142 Score=1185.91 Aligned_cols=536 Identities=81% Similarity=1.337 Sum_probs=491.9
Q ss_pred cCCCCeEEeccCCCcchHHHHHHHHHHhhhhcccCCCCCCcccccCCccccccCCCCCCceEeeecCCCCceEEEeecCC
Q 007605 60 SGDSGIVAVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPN 139 (596)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~p~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPn 139 (596)
...+.++++.+++.|+++++++|++|++|++.+++++||+++|+|||+|+.+|.++..+++|+|+||+||+|+|||||||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPn 89 (545)
T PLN02491 10 QGGSPVVVVNPRPSKGLTSKAVDLLEKLIVKLMHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPN 89 (545)
T ss_pred cCCcceeeccCchhhhhhHHHHHHHHHHHHhhccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCC
Confidence 34455889999999999999999999999999999999999999999999878776788999999999999999999999
Q ss_pred CCCCCCCccccccCCCcEEEEEEeCCcEEEEEEEeechhhHHHHHhCCceeeecCCCCChhhhHHHHHHHHhhhcccccc
Q 007605 140 SKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDF 219 (596)
Q Consensus 140 p~~~~~~~~H~FDGdGMlh~~~f~~G~a~y~~RfVrT~~~~~E~~aG~~~~~~~g~~~g~~g~~~~~~~~~r~~~g~~d~ 219 (596)
|+|.+...+||||||||||+|+|++|+|+|+||||||++|++|+++|+++|++++.++|++|.++..+..+|..++..+.
T Consensus 90 p~~~~~~~~H~FDGDGMlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~~~~~~~~~g~~g~~~~~~~~~r~~~~~~~~ 169 (545)
T PLN02491 90 PKFSPVAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQQLRAKLKVLDF 169 (545)
T ss_pred CCCCCCCCCccccCCccEEEEEEcCCcEEEEeeeecccchhhhhhcCcccccccccccccchhhhhhhhhhhcccccccc
Confidence 99989888999999999999999999999999999999999999999999999999999999988888888877666665
Q ss_pred CCCCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCcccccccccCCCCCCCCCCCceecCCCCeEEEEeecCCCCeEE
Q 007605 220 SYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVT 299 (596)
Q Consensus 220 ~~~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~~~~~p~l~ 299 (596)
..++|+|||+|++|+||||||||+|+||++++.+++||||+|++||+|+|..+||||||+||+|||||+|+|+..+||++
T Consensus 170 ~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~ 249 (545)
T PLN02491 170 SYGNGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYIT 249 (545)
T ss_pred ccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCCCCcceeeecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEE
Confidence 55679999999999999999999999999998777899999999999999999999999999999999999998789999
Q ss_pred EEEecCCCCeeecEEEecCCccceeeeeeCCCEEEEEeCCeecchhhhhhcCceeEEEcCCCCeEEEEEEccCCCCcceE
Q 007605 300 YRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIR 379 (596)
Q Consensus 300 y~~~d~~G~~~~~~~i~l~~p~~~HDFaiTeny~V~~d~pl~~~~~~ml~~g~~~~~~d~~~~sr~~VipR~~~d~~~v~ 379 (596)
|+++|++|++.+.++|+++.|+|||||||||||+||+++|+++++.+|++++..++.|||++++|||||||++++.++++
T Consensus 250 y~~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~ir 329 (545)
T PLN02491 250 YRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIR 329 (545)
T ss_pred EEEECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999998777889999999999999999987667899
Q ss_pred EEEcCceeeeecccccccCCCeEEEEEEecCCCCCcccCCcccccccccCccEEEEEEeCCCCceeEEeeCCCCCCCCcc
Q 007605 380 WFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRI 459 (596)
Q Consensus 380 wfe~p~~f~fH~~NA~Ee~~deIvvd~~~~~~~~~~~~~g~~~~~~~~~~~~L~r~rinl~tg~v~~~~L~~~~~EfP~I 459 (596)
||++|+||+||++|||||+ |+||+|+|++++++++...+...+..+...++|+||||||+||+++++.|++.++|||+|
T Consensus 330 w~e~~~~f~fH~~NA~Ee~-~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~I 408 (545)
T PLN02491 330 WFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRV 408 (545)
T ss_pred EEEcCCceEeecCCccccC-CeEEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccCCcccccCcc
Confidence 9999999999999999987 899999999988776554444333344567899999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCCCCCCcE
Q 007605 460 NEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGY 539 (596)
Q Consensus 460 n~~~~Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~~EDDGy 539 (596)
|++|.||||||+|+++.++++++++|+|+|+++++++|+.+.+++++..+.|++|+|+|+|||+||||+++.+++|||||
T Consensus 409 n~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ 488 (545)
T PLN02491 409 NESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGY 488 (545)
T ss_pred CHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcE
Confidence 99999999999999998888889999999999754445544334555667899999999999999999864225899999
Q ss_pred EEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhhcC
Q 007605 540 LIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL 596 (596)
Q Consensus 540 LLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~~~~ 596 (596)
||++|||+++++|+|+||||++|+++|||||+||+||||||||+|++++||++|+.+
T Consensus 489 ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~~~~~ 545 (545)
T PLN02491 489 LIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 545 (545)
T ss_pred EEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999653
No 2
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=1.7e-137 Score=1149.68 Aligned_cols=502 Identities=41% Similarity=0.742 Sum_probs=462.5
Q ss_pred ccCCCcchHHHHHHHHHHhhhhc------ccCCCCCCcccccCCccccccCCCCCCceEeeecCCCCceEEEeecCCCCC
Q 007605 69 NPKPQKGLAAKVIDFVEGLIVKF------MHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKF 142 (596)
Q Consensus 69 ~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~p~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPnp~~ 142 (596)
+.++.|+++++++|++|+.|+++ +++++||+++|+|||+|+ .|+++..+++|+|+||+||+|+||||||||+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~faPv-~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f 154 (590)
T PLN02258 76 QLNPLQRAAAAALDAVESALVSHLERQHPLPKTADPAVQIAGNFAPV-PEQPVRHNLPVTGRIPDCIDGVYVRNGANPLF 154 (590)
T ss_pred ccCcchhhHHHHHHHHHHHHhhhccccCCCCCCCCcceeccCCCcCc-cccCCcccceEEeeCCCCCCeEEEEeCCCCCC
Confidence 33889999999999999999775 899999999999999999 56677789999999999999999999999999
Q ss_pred CCCCccccccCCCcEEEEEEeCCcEEEEEEEeechhhHHHHHhCCceeee-cCCCCChhhhHHHHHHHHhhhccccccCC
Q 007605 143 APVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSY 221 (596)
Q Consensus 143 ~~~~~~H~FDGdGMlh~~~f~~G~a~y~~RfVrT~~~~~E~~aG~~~~~~-~g~~~g~~g~~~~~~~~~r~~~g~~d~~~ 221 (596)
.+..++||||||||||+|+|++|+|+|+||||||++|++|+++|+++|++ +|++++..|+++..++.+|..++.+|...
T Consensus 155 ~p~~~~H~FDGDGMvhav~f~dG~a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~ 234 (590)
T PLN02258 155 EPVAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASR 234 (590)
T ss_pred CCCCCCccccCCceEEEEEECCCeEEEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhcccccccccccc
Confidence 98888999999999999999999999999999999999999999999997 99988777888888888888778888777
Q ss_pred CCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCcccccccccCCCCCCCCCCCceecCCCCeEEEEeecC-CCCeEEE
Q 007605 222 GNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQ-TPPYVTY 300 (596)
Q Consensus 222 ~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~~~-~~p~l~y 300 (596)
++|+|||+|++|+||||||||+|+||+|++++++||||+|++||+|+|..+||||||+||.|||||+|+|+. .+|+++|
T Consensus 235 ~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~ 314 (590)
T PLN02258 235 GTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKY 314 (590)
T ss_pred ccCCCceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEE
Confidence 889999999999999999999999999999888899999999999999889999999999999999999985 5699999
Q ss_pred EEecCCCCeeecEEEecCCccceeeeeeCCCEEEEEeCCeecchhhhhhcCceeEEEcCCCCeEEEEEEccCCCCcceEE
Q 007605 301 RVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRW 380 (596)
Q Consensus 301 ~~~d~~G~~~~~~~i~l~~p~~~HDFaiTeny~V~~d~pl~~~~~~ml~~g~~~~~~d~~~~sr~~VipR~~~d~~~v~w 380 (596)
+++|++|++.+.++|+++.++|||||||||||+||+++|+++++.+|++ |+.++.|||++++|||||||++++.++++|
T Consensus 315 ~~~d~~G~~~~~~~i~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~~-g~~~~~~d~~~~srfgVipR~~~~~~~irw 393 (590)
T PLN02258 315 FRFSPDGEKSPDVEIPLDQPTMMHDFAITENFVVIPDQQVVFKLSEMIR-GGSPVVYDKNKTSRFGVLPKNATDASEIQW 393 (590)
T ss_pred EEECCCCCEEeeEEeeCCCCccccceeccCceEEEEccCceEcHHHHhh-CCCceEECCCCCcEEEEEECCCCCCCceEE
Confidence 9999999999999999999999999999999999999999999999986 668899999999999999999876788999
Q ss_pred EEcCceeeeecccccccC-CCeEEEEEEecCCCCCcccCCcccc-cccccCccEEEEEEeCCCCceeEEeeCC---CCCC
Q 007605 381 FELPNCYIFHNANAWEEE-EDEVVLITCRVRNPDLDMFNGPLKE-TLEDQTTELYEMRFNMKTGLASQKKLSP---ACVD 455 (596)
Q Consensus 381 fe~p~~f~fH~~NA~Ee~-~deIvvd~~~~~~~~~~~~~g~~~~-~~~~~~~~L~r~rinl~tg~v~~~~L~~---~~~E 455 (596)
||+|+||+||++|||||+ +|+||+|+|++.+++. .++ ..+...++|+||||||+||+++++.|.+ .++|
T Consensus 394 fe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~------~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~E 467 (590)
T PLN02258 394 VEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDS------IFNESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLE 467 (590)
T ss_pred EecCCcEEEecccccccCCCCeEEEEEecccChhh------hcccccccccceEEEEEEECCCCceeeeEeecCCCcccc
Confidence 999999999999999973 4689999999987541 111 1235678999999999999999888865 7999
Q ss_pred CCccCCCCCCCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCCCC
Q 007605 456 FPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEE 535 (596)
Q Consensus 456 fP~In~~~~Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~~E 535 (596)
||+||++|.||+|||+|+++.++++++++|+|+|+++ |+. +.|++|+|+|+|||+||||+++ +++|
T Consensus 468 FP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~t----g~~---------~~~~~g~g~~~gEPvFVPr~~~-~~~E 533 (590)
T PLN02258 468 AGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLST----GEV---------KKYIYGEGRYGGEPFFVPRGSG-SEAE 533 (590)
T ss_pred cceECHHHCCCccceEEEeccCCCCCCCeEEEEECCC----CcE---------EEEECCCCccccCCEeccCCCC-Cccc
Confidence 9999999999999999999988888999999999996 552 3699999999999999999975 2359
Q ss_pred CCcEEEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhh
Q 007605 536 DDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA 594 (596)
Q Consensus 536 DDGyLLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~~ 594 (596)
||||||++|||+++++|+|+||||++|+ +||||+||+||||||||+|++++||++|+
T Consensus 534 DDGylls~V~d~~~~~SeL~IlDA~~l~--~VArv~LP~rVP~GFHG~wv~~~~l~~q~ 590 (590)
T PLN02258 534 DDGYILAFVHDEEKGKSELQVVNAVNLE--LEATVKLPSRVPYGFHGTFISAEDLLKQA 590 (590)
T ss_pred CCcEEEEEEEECCCCceEEEEEeCCCCc--ccEEEECCCCCCCcccccccCHHHHhhcC
Confidence 9999999999999999999999999997 69999999999999999999999999983
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-117 Score=932.15 Aligned_cols=457 Identities=39% Similarity=0.651 Sum_probs=397.5
Q ss_pred cccccCCccccccCCCCCCceEeeecCCCCceEEEeecCCCCCCC-CCccccccCCCcEEEEEEeCC-cEEEEEEEeech
Q 007605 100 HYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFAP-VAGYHWFDGDGMLHGLRIKDG-KAAYVSRYVKTS 177 (596)
Q Consensus 100 ~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPnp~~~~-~~~~H~FDGdGMlh~~~f~~G-~a~y~~RfVrT~ 177 (596)
++++|+|+|++.|...+....|+|+||++|+|+||||||||+..+ .+.|||||||||||+|.|.|| +|+|+||||||.
T Consensus 20 ~~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT~ 99 (490)
T COG3670 20 PYWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRTQ 99 (490)
T ss_pred hhhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEeec
Confidence 466899999987876555445999999999999999999998876 567999999999999999995 999999999999
Q ss_pred hhHHHHHhCCceeeecCCCCChhhhHHHHHHHHhhhccccccCCCCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCc
Q 007605 178 RLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDL 257 (596)
Q Consensus 178 ~~~~E~~aG~~~~~~~g~~~g~~g~~~~~~~~~r~~~g~~d~~~~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tL 257 (596)
+|.+|++||+++++++++..+..... ..+ .+ .-+|.|||||++|+++|+||||+|.||+||+ .||
T Consensus 100 g~~ae~~Ag~~l~~g~~~~~p~~~~~-----~~~--~~-----~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp---~tL 164 (490)
T COG3670 100 GYLAENEAGKPLWGGLGETQPPGVRP-----HSR--TG-----DLKNAANTSVIMHGDELLALWEGGSPYRLDP---DTL 164 (490)
T ss_pred eeehhhhcCcceeccccccCCCCcCc-----Ccc--cc-----ccccCCccceEeehhHHHHHHhcCCccccCh---hHh
Confidence 99999999999999977654321110 000 01 1269999999999999999999999999999 499
Q ss_pred ccccccccCC-CCCCCCCCCceecCCCCeEEEEeecCCCCeEEEEEecCCCCeeecEEEecCCccceeeeeeCCCEEEEE
Q 007605 258 QTLGMLDYDK-RLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFL 336 (596)
Q Consensus 258 eTlG~~d~~g-~l~~~~tAHPk~Dp~TGel~~f~~~~~~p~l~y~~~d~~G~~~~~~~i~l~~p~~~HDFaiTeny~V~~ 336 (596)
+|+|..+|+| .+..+||||||+||.||||+||||+...||++|+++|+||++++.+.|++|.+.|||||+||+||+||+
T Consensus 165 ~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~~~i~lpg~~~~HDFa~T~~y~If~ 244 (490)
T COG3670 165 ETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRTVDIPLPGPPMMHDFAITENYLIFF 244 (490)
T ss_pred hhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEeeeeecCCCccceeeeecCceEEEE
Confidence 9999999999 556789999999999999999999998889999999999999999999999999999999999999999
Q ss_pred eCCeecchh-hhhhc--CceeEEEcCCCCeEEEEEEccCCCCcceEEEEcCceeeeecccccccCCCeEEEEEEecCCCC
Q 007605 337 DLPMCFRQK-EMVKE--NKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPD 413 (596)
Q Consensus 337 d~pl~~~~~-~ml~~--g~~~~~~d~~~~sr~~VipR~~~d~~~v~wfe~p~~f~fH~~NA~Ee~~deIvvd~~~~~~~~ 413 (596)
++|+.+|+. ++|.. .+.++.|+|+.++||+||||.+ + ++|||||+|+||+||+.||||++++.|.+|.|+++++.
T Consensus 245 ~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~ 322 (490)
T COG3670 245 DLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDFS 322 (490)
T ss_pred eCcccccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecCCCcEEEEEEeecccc
Confidence 999999963 44322 3568999999999999999986 3 78999999999999999999998677888888888653
Q ss_pred CcccC-Cccccc--ccccCccEEEEEEeCCCCceeEEeeCCCCCCCCccCCCCCCCCCCeEEEecccc-cCCCCe---EE
Q 007605 414 LDMFN-GPLKET--LEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILEN-IAKVTG---MI 486 (596)
Q Consensus 414 ~~~~~-g~~~~~--~~~~~~~L~r~rinl~tg~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~~-~~~~~g---i~ 486 (596)
...-. +..... .....++|+||+|||+||++..+.+.++++|||+||++|+|++|||+|++...+ ++.+++ |+
T Consensus 323 ~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~ 402 (490)
T COG3670 323 QTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTLA 402 (490)
T ss_pred cccccccccccccccccCCCcceEEEEccccchhHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccchhhcceeE
Confidence 21100 000000 012268999999999999999999999999999999999999999999997664 455666 99
Q ss_pred EEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCc
Q 007605 487 KFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADP 566 (596)
Q Consensus 487 K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~~EDDGyLLs~V~d~~~~~S~L~IlDA~~~~~~p 566 (596)
|+|+++ |+. +.|.+++++|+|||+|||||++ +.|||||||++|+|.+.+.|+|+|+||+++++||
T Consensus 403 k~D~~t----g~~---------~~~~~g~~~y~~E~vfvPrpg~--~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~ep 467 (490)
T COG3670 403 KHDLET----GTS---------QVYSFGPRGYGSEPVFVPRPGS--SAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEP 467 (490)
T ss_pred EEeccC----CcE---------EEEecCCCCcccccccccCCCC--CcCCCcEEEEEEEecCCCcceEEEEecccCCCCc
Confidence 999996 553 3689999999999999999975 7999999999999999999999999999999999
Q ss_pred eEEEEcCCcCCCCCCccccChh
Q 007605 567 VAVIELPHRVPYGFHGIFLSEE 588 (596)
Q Consensus 567 VArv~LP~rVP~GFHG~fv~~~ 588 (596)
|||+.||++|||||||.|++.+
T Consensus 468 Ia~l~Lp~~vP~gfHG~w~~~~ 489 (490)
T COG3670 468 IARLALPQRVPYGFHGNWVPTE 489 (490)
T ss_pred ceEEeccccccccccccccccc
Confidence 9999999999999999999875
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=6.7e-111 Score=928.85 Aligned_cols=461 Identities=39% Similarity=0.673 Sum_probs=344.3
Q ss_pred ccCCccccccCCCCCCceEeeecCCCCceEEEeecCCCCC-C-CCCccccccCCCcEEEEEEeCCcEEEEEEEeechhhH
Q 007605 103 SGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKF-A-PVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLK 180 (596)
Q Consensus 103 ~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPnp~~-~-~~~~~H~FDGdGMlh~~~f~~G~a~y~~RfVrT~~~~ 180 (596)
+|+|+|+++|..+...+.|+|+||+||+|+|||||||+++ . +...+||||||||||+|+|++|+|+|+||||||++|+
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~ 80 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYK 80 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHH
T ss_pred CCCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHH
Confidence 5899999877756667999999999999999999999977 3 4456799999999999999999999999999999999
Q ss_pred HHHHhCCceeee-cCCCCChhhhHHHHHHHHhhhccccccCCCCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCccc
Q 007605 181 QEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQT 259 (596)
Q Consensus 181 ~E~~aG~~~~~~-~g~~~g~~g~~~~~~~~~r~~~g~~d~~~~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tLeT 259 (596)
+|+++|+.+|.+ +|+... .+.++..+ .... .......+|+|||+|++|+||||||||+|.||+||+ .||||
T Consensus 81 ~e~~~g~~~~~g~~gt~~~-~~~~~~~~-~~~~---~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp---~TLeT 152 (486)
T PF03055_consen 81 AEREAGRRLYRGEFGTVPL-PDPCRNIF-RFPM---PFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELDP---DTLET 152 (486)
T ss_dssp HHHHHTSS-SC-TTTCTTC-STHHHHTC-HHTT---S--GGGB-----SEEEEETTEEEEE-TTSEEEEEET---TTCEE
T ss_pred HHHhcCCceeccccccccc-Cchhhhhh-hhcc---ccccccCCCCceeeeEEECCEEEEEEcCCCCEEech---hHhhh
Confidence 999999999987 776531 11111110 0000 011112379999999999999999999999999999 59999
Q ss_pred ccccccCCCCC-CCCCCCceecCCCCeEEEEeecCC---CCeEEEEEecCCCCeeecEEE-ecCCccceeeeeeCCCEEE
Q 007605 260 LGMLDYDKRLN-HPFTAHPKIDPYTDEMFTFGYTQT---PPYVTYRVISKDGFMHDPVPI-TMSAPIMMHDFAITENYAI 334 (596)
Q Consensus 260 lG~~d~~g~l~-~~~tAHPk~Dp~TGel~~f~~~~~---~p~l~y~~~d~~G~~~~~~~i-~l~~p~~~HDFaiTeny~V 334 (596)
+|.+||+++|. ..||||||+||+|||+++|+++.. .|+++|+++|++|++.+.+++ +++.++|||||+|||||+|
T Consensus 153 ~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V 232 (486)
T PF03055_consen 153 LGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVTENYVV 232 (486)
T ss_dssp EEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCCCS-B-----EE-SSEEE
T ss_pred cCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccCCCCcccccccccCceEE
Confidence 99999999999 689999999999999999999853 489999999999987777777 8999999999999999999
Q ss_pred EEeCCeecchhhhhhcC--ceeEEEcCCCCeEEEEEEccCCCCcceEEEEcCceeeeecccccccCCC--eEEEEEEecC
Q 007605 335 FLDLPMCFRQKEMVKEN--KLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEED--EVVLITCRVR 410 (596)
Q Consensus 335 ~~d~pl~~~~~~ml~~g--~~~~~~d~~~~sr~~VipR~~~d~~~v~wfe~p~~f~fH~~NA~Ee~~d--eIvvd~~~~~ 410 (596)
|+++|+.+++.+++++. ..++.|+|++++||+||||++++ +.++||++|+||+||++||||++++ +||+|.|+++
T Consensus 233 ~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~ 311 (486)
T PF03055_consen 233 FPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYD 311 (486)
T ss_dssp EEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEEC
T ss_pred EEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceEEEEEEeecC
Confidence 99999999999999743 27899999999999999999743 7899999999999999999999743 9999999998
Q ss_pred CCCCcc-cC-Cccc----ccccccCccEEEEEEeCC--CCceeEEeeCCC-CCCCCccCCCCCCCCCCeEEEecccc---
Q 007605 411 NPDLDM-FN-GPLK----ETLEDQTTELYEMRFNMK--TGLASQKKLSPA-CVDFPRINEHYMGRKQRYVYGSILEN--- 478 (596)
Q Consensus 411 ~~~~~~-~~-g~~~----~~~~~~~~~L~r~rinl~--tg~v~~~~L~~~-~~EfP~In~~~~Gr~~RY~Y~~~~~~--- 478 (596)
+.++.. .. +... .......++|+||+||++ +|+++++.|++. ++|||+||++|.||+|||+|+++.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~ 391 (486)
T PF03055_consen 312 DPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGMDPERS 391 (486)
T ss_dssp SSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEECSCTS
T ss_pred CcccccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhccCCCcccceeCcccCCCcccEEEEEeecccCC
Confidence 866321 10 0011 112356799999999999 999988999987 69999999999999999999876553
Q ss_pred -cCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEE
Q 007605 479 -IAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVI 557 (596)
Q Consensus 479 -~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~~EDDGyLLs~V~d~~~~~S~L~Il 557 (596)
...+++|+|+|+++ ++. ..|.+|+++|++||+||||+++ .+|||||||++|+|..+++|+|+||
T Consensus 392 ~~~~~~~l~k~D~~t----g~~---------~~~~~~~~~~~~EpvFVPr~~~--~~EdDG~Ll~~v~~~~~~~s~l~Vl 456 (486)
T PF03055_consen 392 PGFPFNGLVKVDLET----GEV---------QRWSFGPGCFPGEPVFVPRPGG--AEEDDGYLLSVVYDSDTNRSELLVL 456 (486)
T ss_dssp ---EEEEEEEEETTT----TEE---------EEEE-TTTEEE--EEEEE-TTS---STT-EEEEEEEEETTTTCEEEEEE
T ss_pred cCcCCCEEEEEeccc----ccc---------eEEECCCCceecceEeccCCCC--CCCCceEEEEEEEECCCCccEEEEE
Confidence 34689999999996 543 3699999999999999999975 7899999999999999999999999
Q ss_pred eCCCCCCCceEEEEcCCcCCCCCCccccCh
Q 007605 558 DAKTMSADPVAVIELPHRVPYGFHGIFLSE 587 (596)
Q Consensus 558 DA~~~~~~pVArv~LP~rVP~GFHG~fv~~ 587 (596)
||++|++|||||++||++||+||||+|+++
T Consensus 457 DA~~l~~GPvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 457 DAKDLEEGPVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp ETTTTCE--EEEEEESS---S-SEEEEEE-
T ss_pred eCCCCCcCceEEEECCCCCCCCccccccCC
Confidence 999999999999999999999999999874
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=1e-104 Score=894.87 Aligned_cols=459 Identities=26% Similarity=0.410 Sum_probs=372.1
Q ss_pred ccCCccccccCC-CCCCceEeeecCCCC-ceEEEeecCCCCCCCCC-ccccccCCCcEEEEEEeCC--cEEEEEEEeech
Q 007605 103 SGNFGPVRHETP-PTADLPVIGFLHECL-NGEFIRVGPNSKFAPVA-GYHWFDGDGMLHGLRIKDG--KAAYVSRYVKTS 177 (596)
Q Consensus 103 ~g~fapv~~E~~-~~~~l~V~G~IP~~L-~G~~~RNGPnp~~~~~~-~~H~FDGdGMlh~~~f~~G--~a~y~~RfVrT~ 177 (596)
+++|+|+.+|.. +....+|+|+||+|| +|||||||||+++.+.. .+||||||||||+|+|++| +|+|+||||||+
T Consensus 61 ~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVrT~ 140 (610)
T PLN02969 61 QFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVKTE 140 (610)
T ss_pred hhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeeccH
Confidence 789999977763 343346999999999 99999999998776543 4899999999999999998 599999999999
Q ss_pred hhHHHHHhCCceeeecCCCCChhhhHHHHHHHHhhhccccccCCCCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCc
Q 007605 178 RLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDL 257 (596)
Q Consensus 178 ~~~~E~~aG~~~~~~~g~~~g~~g~~~~~~~~~r~~~g~~d~~~~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tL 257 (596)
+|++|+++|+.++.- ..++.++.. +......+....+|+|||+|++|+||||||||+|.||+||+ .||
T Consensus 141 ~~~~E~~ag~~~~~~--~~~~pfs~~-------~~~~~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP---~TL 208 (610)
T PLN02969 141 AKKEEHDPETRTWRF--TYRGPFSVL-------KGGKRVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEIDS---GTL 208 (610)
T ss_pred HHHHHHHhCCcceee--eeccchhcc-------cCCCCcccccccccCCCcceeeeCCEEEEecCCCCCeEcCc---Ccc
Confidence 999999999887641 112222211 00000001112369999999999999999999999999998 599
Q ss_pred cccccccc-----------------------------CCCCC---CCCCCCceecCCCCeEEEEeecC-----CCCeEEE
Q 007605 258 QTLGMLDY-----------------------------DKRLN---HPFTAHPKIDPYTDEMFTFGYTQ-----TPPYVTY 300 (596)
Q Consensus 258 eTlG~~d~-----------------------------~g~l~---~~~tAHPk~Dp~TGel~~f~~~~-----~~p~l~y 300 (596)
||+|++|| .|.+. .+||||||+||.||||++|+|+. .+|.++|
T Consensus 209 eT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~ 288 (610)
T PLN02969 209 ETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTF 288 (610)
T ss_pred ceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCceeEE
Confidence 99999999 34443 46899999999999999999974 2478999
Q ss_pred EEecCCCCeeecEEEecCCccceeeeeeCCCEEEEEeCCeecchhhhhh--cCc----eeEEEcCCCCe-EEEEEEccCC
Q 007605 301 RVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVK--ENK----LIYAFDPTIKA-RFGVLPRYAR 373 (596)
Q Consensus 301 ~~~d~~G~~~~~~~i~l~~p~~~HDFaiTeny~V~~d~pl~~~~~~ml~--~g~----~~~~~d~~~~s-r~~VipR~~~ 373 (596)
+++|++|++.+..++++|.++|||||||||||+||+++|+++|+.++|. .|. .++.|+|++++ ||+||||++.
T Consensus 289 y~~d~~G~~~~~~~~~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~ 368 (610)
T PLN02969 289 YEFDADFKLVQRKEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPE 368 (610)
T ss_pred EEECCCCCEecceeecCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEEEECcCC
Confidence 9999999999999999999999999999999999999999999987552 232 45899999995 8999999975
Q ss_pred CC-cceEE---EEcC-ceeeeecccccccC--CC--eEEEEEEe--cCCCCCc-c-----cCCccccc------ccccCc
Q 007605 374 DD-LQIRW---FELP-NCYIFHNANAWEEE--ED--EVVLITCR--VRNPDLD-M-----FNGPLKET------LEDQTT 430 (596)
Q Consensus 374 d~-~~v~w---fe~p-~~f~fH~~NA~Ee~--~d--eIvvd~~~--~~~~~~~-~-----~~g~~~~~------~~~~~~ 430 (596)
+. ..++| |++| +||+||++|||||+ +| +||+|+|+ +++..+. . ..+.+... .....+
T Consensus 369 ~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (610)
T PLN02969 369 KEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAKGKELLP 448 (610)
T ss_pred CcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccccccccccccCcchhcccCcccccc
Confidence 32 68999 9998 59999999999973 23 59999875 4433211 0 00000000 012357
Q ss_pred cEEEEEEeCC-CCce---eEEeeC---CCCCCCCccCCCCCCCCCCeEEEecccc------cCCCCeEEEEecccCCccC
Q 007605 431 ELYEMRFNMK-TGLA---SQKKLS---PACVDFPRINEHYMGRKQRYVYGSILEN------IAKVTGMIKFDLRAEPETG 497 (596)
Q Consensus 431 ~L~r~rinl~-tg~v---~~~~L~---~~~~EfP~In~~~~Gr~~RY~Y~~~~~~------~~~~~gi~K~Dl~~~~~~g 497 (596)
+|+||+||++ +|++ +.+.|+ +.++|||+||++|.||+|||+|+++.++ ...+++|+|+|+++ |
T Consensus 449 ~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~t----g 524 (610)
T PLN02969 449 HLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDVPD----G 524 (610)
T ss_pred eEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEECCC----C
Confidence 8999999996 6765 447775 6799999999999999999999987652 23589999999996 5
Q ss_pred ceeeeecCceeeEEEcCCCccCcceEEeeCCC--CCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCC--ceEEEEcC
Q 007605 498 KTKLEVGGNVKGIFDLGPGRFGSEAVFVPREP--SSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSAD--PVAVIELP 573 (596)
Q Consensus 498 ~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~--~~~~~EDDGyLLs~V~d~~~~~S~L~IlDA~~~~~~--pVArv~LP 573 (596)
+. +.|++|+++|+|||+||||++ + +.+|||||||++|+|..+++|+|+||||++|++| ||||++||
T Consensus 525 ~~---------~~w~~g~~~~~~EPvFVPr~~~p~-~~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP 594 (610)
T PLN02969 525 SA---------RSWSTGARRFVGEPVFVPRKSSQG-GGEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVP 594 (610)
T ss_pred CE---------EEEEeCCCCcccCCEEecCCCCCC-CCccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECC
Confidence 53 368899999999999999952 2 3689999999999999999999999999999986 99999999
Q ss_pred CcC--CCCCCccccCh
Q 007605 574 HRV--PYGFHGIFLSE 587 (596)
Q Consensus 574 ~rV--P~GFHG~fv~~ 587 (596)
++| |+||||+|+++
T Consensus 595 ~~v~~P~GfHG~w~~~ 610 (610)
T PLN02969 595 KHLTFPMGFHGFWADE 610 (610)
T ss_pred cccCCCccccccccCC
Confidence 998 99999999874
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-81 Score=688.70 Aligned_cols=496 Identities=37% Similarity=0.572 Sum_probs=447.8
Q ss_pred CCCcchHHHHHHHHHHhhhh------cccCCCCCCcccccCCccccccCCCCCCceEeeecCCCCceEEEeecCCCCCCC
Q 007605 71 KPQKGLAAKVIDFVEGLIVK------FMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFAP 144 (596)
Q Consensus 71 ~~~~~~~~~~~d~~~~~~~~------~~~~~~~p~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPnp~~~~ 144 (596)
.+.+..+..+.|.. .++.+ +++++.+|++++++||+|+ .|.++...+.++|.+|.+++|.++|||||+.|.|
T Consensus 72 ~~~~~~~~~~~dg~-~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~-~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~p 149 (582)
T KOG1285|consen 72 GPALLHAFHFLDGR-VYYSSRYLESDPYKKTVDPNRIVSGEFAPV-AEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTP 149 (582)
T ss_pred chhhhhheeecCCe-EEEEeeecccCCcccccccceeeecccccc-CCCCCccCcceeeeeeecccccccccCCCcceee
Confidence 45566666677765 22332 4568899999999999999 5999888899999999999999999999999999
Q ss_pred CCccccccCCCcEEEEEEeCC--cEEEEEEEeechhhHHHHHhCCceeee-cCCCCChhhhHHHHHHHHhhhccccccCC
Q 007605 145 VAGYHWFDGDGMLHGLRIKDG--KAAYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSY 221 (596)
Q Consensus 145 ~~~~H~FDGdGMlh~~~f~~G--~a~y~~RfVrT~~~~~E~~aG~~~~~~-~g~~~g~~g~~~~~~~~~r~~~g~~d~~~ 221 (596)
.+++|+||||||+|+++|+.| +++|++||.+| |.+|..+|+..+.. +|++.+.+|.++...+..|...++.+...
T Consensus 150 v~g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~ 227 (582)
T KOG1285|consen 150 VGGHHLYAGTETPHAVKIDPGTLETTYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPAN 227 (582)
T ss_pred cCCCeeEecCCCceeEEecCcccceeEeeccccc--eeeeeecccCCcccCcccEEeeechhhccccccceeEEEecCCC
Confidence 999999999999999999999 89999999999 99999999776665 99999988888777778888888888888
Q ss_pred CCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCccc-ccccccCCCCCCCCCCCceecCCCCeEEEEeecCC-CCeEE
Q 007605 222 GNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQT-LGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQT-PPYVT 299 (596)
Q Consensus 222 ~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tLeT-lG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~~~~-~p~l~ 299 (596)
+.+.+|+.++|+.++++|+.|+++||.+.+...|++|| ||+++|+++|...+.||||+||.||+++++.|+.. +|++.
T Consensus 228 ~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~ 307 (582)
T KOG1285|consen 228 GVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLI 307 (582)
T ss_pred ccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEE
Confidence 89999999999999999999999999999988899999 99999999999999999999999999999999865 58999
Q ss_pred EEEecCCCCeeecEEEecCCccceeeeeeCCCEEEEEeCCeecchhhhhhcCceeEEEcCCCCeEEEEEEccCCCCcceE
Q 007605 300 YRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIR 379 (596)
Q Consensus 300 y~~~d~~G~~~~~~~i~l~~p~~~HDFaiTeny~V~~d~pl~~~~~~ml~~g~~~~~~d~~~~sr~~VipR~~~d~~~v~ 379 (596)
|++++++|.+..++.+....|+|+||||+|||++|++|+|+.+++.+|... .+++.++..+..||++.+++..+.+.++
T Consensus 308 ~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~~~-~~p~~~~~~k~~rfg~~~k~~~d~~~~~ 386 (582)
T KOG1285|consen 308 YHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMIRD-TSPLLYDNGKTLRFGLLSKTAPDARRIV 386 (582)
T ss_pred EEEeccccCccCcceeccCcceEEEeeeecccCceEEEEEEEechhhhhcc-cceeecccccccccccccccCCcccceE
Confidence 999999999999898888899999999999999999999999999999874 4489999999999999999999999999
Q ss_pred EEEcCceeeeecccccccC--CCeEEEEEEecCCCCCcccCCccc-ccccccCccEEEEEEeCCCCceeEEeeCC-CCCC
Q 007605 380 WFELPNCYIFHNANAWEEE--EDEVVLITCRVRNPDLDMFNGPLK-ETLEDQTTELYEMRFNMKTGLASQKKLSP-ACVD 455 (596)
Q Consensus 380 wfe~p~~f~fH~~NA~Ee~--~deIvvd~~~~~~~~~~~~~g~~~-~~~~~~~~~L~r~rinl~tg~v~~~~L~~-~~~E 455 (596)
|.+.+.+|+||++|+||+. +.+++|...++...+ .++ +..+....+|.+.|++++||...++.+.. .++|
T Consensus 387 ~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~------~i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~~~nl~ 460 (582)
T KOG1285|consen 387 WPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTS------TIFRESDELLGNRLEEIRLNLKTGLEFPRPVIPKINLD 460 (582)
T ss_pred EEeccccccccchhhhcccCCCceEEeecccCCccc------hhhcccccchhceeeeeeecccccccccceeecccccc
Confidence 9999999999999999962 247888888887655 222 23567789999999999999988777665 4999
Q ss_pred CCccCCCCCCCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCCCC
Q 007605 456 FPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEE 535 (596)
Q Consensus 456 fP~In~~~~Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~~E 535 (596)
+++||+.|.||+|||+|+++.++|++++||+|+|+.+ |+. ..|.+|+++++|||+|||++++ .+|
T Consensus 461 ~~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~----g~~---------~~w~~~~~~~~GEP~FVP~p~~--~eE 525 (582)
T KOG1285|consen 461 FGMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVT----GEV---------KKWREGGGRPGGEPIFVPRPGT--LEE 525 (582)
T ss_pred cccccceeecccceEEEEEecCCccCCCeEEEEEecC----Cce---------eeEecCCCccCCCceEecCCCC--ccc
Confidence 9999999999999999999999999999999999996 442 2589999999999999999854 799
Q ss_pred CCcEEEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhh
Q 007605 536 DDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA 594 (596)
Q Consensus 536 DDGyLLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~~ 594 (596)
||||||++|||+++++|+|+|||||+|+ ++||+++|.||||||||+|+++.||++|.
T Consensus 526 DdG~Iv~~v~~~~~~~s~l~ildAK~l~--~~ar~~vp~rvP~gfHG~f~~~~~~~~~~ 582 (582)
T KOG1285|consen 526 DDGYIVSVVHDESKEKSFLLILDAKTLE--EVARVEVPTRVPYGFHGTFVSTTDLATQS 582 (582)
T ss_pred CCcEEEEEEEcCCCCcccEEEEeccccc--eeeEEecCCCCCCccceeEeccccccccC
Confidence 9999999999999999999999999976 89999999999999999999999999883
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=7.5e-30 Score=282.13 Aligned_cols=344 Identities=20% Similarity=0.248 Sum_probs=234.0
Q ss_pred ceEeeecCCCCceEEEeecCCCCCCCC-CccccccCCCcEEEEEEeCCcEEEEEEEeechhhHHHHHhCCceeeecCCCC
Q 007605 119 LPVIGFLHECLNGEFIRVGPNSKFAPV-AGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVK 197 (596)
Q Consensus 119 l~V~G~IP~~L~G~~~RNGPnp~~~~~-~~~H~FDGdGMlh~~~f~~G~a~y~~RfVrT~~~~~E~~aG~~~~~~~g~~~ 197 (596)
..+.|.||.||+|+++||||+.+-.++ ..+|||||-+++|++++.||+++|++||++|+.|+......+.+..+|+...
T Consensus 37 ~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~~ 116 (582)
T KOG1285|consen 37 CTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVSGEFAPVA 116 (582)
T ss_pred cccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCcccccccceeeeccccccC
Confidence 678999999999999999999855454 3469999999999999999999999999999999988888888888877654
Q ss_pred ChhhhHHHHHHHHhhhccccccCCCCCCcceEEEEe-CCeEEEEEecCCceEEeeCCCCCcccccccccCCC-CC-CCCC
Q 007605 198 GLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYH-HGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKR-LN-HPFT 274 (596)
Q Consensus 198 g~~g~~~~~~~~~r~~~g~~d~~~~~~~ANT~v~~~-~grLlAl~E~~~Py~ld~~~~~tLeTlG~~d~~g~-l~-~~~t 274 (596)
+.--.....+...-..+ .+....+++||.++... +++|||.+|.- +.++++. +||+|+..++|.+. +. +.++
T Consensus 117 ~~pd~~~~~~s~~~~~~--~~g~~~rd~aN~~f~pv~g~~~~~gtet~--~~~ki~~-~tl~t~~~~~~~k~~v~~~~~g 191 (582)
T KOG1285|consen 117 EFPDPCKNIFSGFFPEF--RNGESIRDNANPNFTPVGGHHLYAGTETP--HAVKIDP-GTLETTYKVRFTKTLVQEHTAG 191 (582)
T ss_pred CCCCccCcceeeeeeec--ccccccccCCCcceeecCCCeeEecCCCc--eeEEecC-cccceeEeeccccceeeeeecc
Confidence 21111111111100000 11223479999999999 88999998875 5555543 69999999999984 44 4789
Q ss_pred CCceecCCCCeEEE-Eeec-CCC---CeEEEEEecCCCCe---ee-----cEEE-----ecCCccceeeeeeCCCEEEEE
Q 007605 275 AHPKIDPYTDEMFT-FGYT-QTP---PYVTYRVISKDGFM---HD-----PVPI-----TMSAPIMMHDFAITENYAIFL 336 (596)
Q Consensus 275 AHPk~Dp~TGel~~-f~~~-~~~---p~l~y~~~d~~G~~---~~-----~~~i-----~l~~p~~~HDFaiTeny~V~~ 336 (596)
|||++|+. |++++ +|.. ... ..++.....+.|.. .. ...+ ..+.|.|||+|+.||||+|++
T Consensus 192 ah~~~d~~-G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~ 270 (582)
T KOG1285|consen 192 AHPHPDEI-GTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRF 270 (582)
T ss_pred cCCcccCc-ccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEe
Confidence 99999986 99999 6664 322 22222232222211 11 1111 356899999999999999999
Q ss_pred eCCeecchhhhhhcC---------ceeEEEcCCCCeEEEEEEccCCCCcceEEEEcCceeeeecccccccCCCeEEEEEE
Q 007605 337 DLPMCFRQKEMVKEN---------KLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITC 407 (596)
Q Consensus 337 d~pl~~~~~~ml~~g---------~~~~~~d~~~~sr~~VipR~~~d~~~v~wfe~p~~f~fH~~NA~Ee~~deIvvd~~ 407 (596)
++|+.+++.+++.-. ..++.|.|+....++++.+..+....+. ..+++++||+.||||++ +.||+|.|
T Consensus 271 e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~--~~~~~~t~hh~na~eed-g~vi~D~~ 347 (582)
T KOG1285|consen 271 EFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVE--IFPSFPTFHHDNAFEED-GCVVPDLC 347 (582)
T ss_pred cCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcce--eccCcceEEEeeeeccc-CceEEEEE
Confidence 999999999886421 2356888888999999998875433333 23459999999999999 99999999
Q ss_pred ecCCCCCcccCCcccccccccCccEEEEEEeCCCCceeEE---eeCCCCCCCCccCCCCCCCCCCeEEEec
Q 007605 408 RVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQK---KLSPACVDFPRINEHYMGRKQRYVYGSI 475 (596)
Q Consensus 408 ~~~~~~~~~~~g~~~~~~~~~~~~L~r~rinl~tg~v~~~---~L~~~~~EfP~In~~~~Gr~~RY~Y~~~ 475 (596)
++.+.. .+..+.. ..-....+.-|+.++.++....++ .++...+.|+ ...++.-+.|-+.|.+.
T Consensus 348 ~~~~~~-~~~~~~~--p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~-~~~~~e~~~~~~~~~v~ 414 (582)
T KOG1285|consen 348 VYFDLS-EMIRDTS--PLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFH-LWNNWEKKPYDWEVVVI 414 (582)
T ss_pred EEechh-hhhcccc--eeecccccccccccccccCCcccceEEEecccccccc-chhhhcccCCCceEEee
Confidence 998765 1111110 001112223333334443322222 2334455677 44444446666665554
No 8
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=68.08 E-value=1.8e+02 Score=31.44 Aligned_cols=246 Identities=18% Similarity=0.199 Sum_probs=118.6
Q ss_pred ceEEeeCCCCCcccccccccCCCCCCCCCCCceecCCCCeEEEEee--cC---CCCeEEEEEecCCCCeeecEEEecCC-
Q 007605 246 PYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGY--TQ---TPPYVTYRVISKDGFMHDPVPITMSA- 319 (596)
Q Consensus 246 Py~ld~~~~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~--~~---~~p~l~y~~~d~~G~~~~~~~i~l~~- 319 (596)
-|.+|.+ +.+-+|..+ ..+.+|.-+.|+-.+++.-+. +. +.--=.+-++|.+. +....+|.||.
T Consensus 19 v~viD~d---~~k~lGmi~------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k 88 (342)
T PF06433_consen 19 VYVIDAD---SGKLLGMID------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPK 88 (342)
T ss_dssp EEEEETT---TTEEEEEEE------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS
T ss_pred EEEEECC---CCcEEEEee------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCc
Confidence 3455542 444455543 356778888888777765433 11 11112233455443 23334455553
Q ss_pred -----ccceeeeeeCCCEEEEEeCCeecchhhhhhcCceeEEEcCCCCeEEEEEEccCCCCcceEEEEcCceeeeecccc
Q 007605 320 -----PIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANA 394 (596)
Q Consensus 320 -----p~~~HDFaiTeny~V~~d~pl~~~~~~ml~~g~~~~~~d~~~~sr~~VipR~~~d~~~v~wfe~p~~f~fH~~NA 394 (596)
-.+-+.|++|. .++..+.|+-.--+-+.||+-.+ ..-++-+++|.|....-
T Consensus 89 ~R~~~~~~~~~~~ls~-------------------dgk~~~V~N~TPa~SVtVVDl~~--~kvv~ei~~PGC~~iyP--- 144 (342)
T PF06433_consen 89 PRAQVVPYKNMFALSA-------------------DGKFLYVQNFTPATSVTVVDLAA--KKVVGEIDTPGCWLIYP--- 144 (342)
T ss_dssp -B--BS--GGGEEE-T-------------------TSSEEEEEEESSSEEEEEEETTT--TEEEEEEEGTSEEEEEE---
T ss_pred chheecccccceEEcc-------------------CCcEEEEEccCCCCeEEEEECCC--CceeeeecCCCEEEEEe---
Confidence 12344444442 25566777777779999999876 35678889998864321
Q ss_pred cccCCCeEEEEEEecCCCCCcccCCcccccccccCccEEEEEEeCCCCceeEE--eeCCCCCCCCccCCCCCCCCCCeEE
Q 007605 395 WEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQK--KLSPACVDFPRINEHYMGRKQRYVY 472 (596)
Q Consensus 395 ~Ee~~deIvvd~~~~~~~~~~~~~g~~~~~~~~~~~~L~r~rinl~tg~v~~~--~L~~~~~EfP~In~~~~Gr~~RY~Y 472 (596)
+.+ +. +-..|- .+.|..++||- .|+..++ .+...--|-.-.++.|.+...+|.|
T Consensus 145 ~~~--~~--F~~lC~-------------------DGsl~~v~Ld~-~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 145 SGN--RG--FSMLCG-------------------DGSLLTVTLDA-DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp EET--TE--EEEEET-------------------TSCEEEEEETS-TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred cCC--Cc--eEEEec-------------------CCceEEEEECC-CCCEeEeeccccCCCCcccccccceECCCCeEEE
Confidence 111 12 112222 13455555553 3333221 2332233433345567777788887
Q ss_pred EecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcC------CCccC--cceEEeeCCCCCCCCCCCcEEEEEE
Q 007605 473 GSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLG------PGRFG--SEAVFVPREPSSTSEEDDGYLIFHV 544 (596)
Q Consensus 473 ~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g------~g~~~--~EPiFVPr~~~~~~~EDDGyLLs~V 544 (596)
..-. .-|.-+|+.... .+ . ...|+.- +++-+ -+++= -....|-|.+++
T Consensus 201 ~Sy~------G~v~~~dlsg~~----~~--~----~~~~~~~t~~e~~~~WrPGG~Q~~A--------~~~~~~rlyvLM 256 (342)
T PF06433_consen 201 VSYE------GNVYSADLSGDS----AK--F----GKPWSLLTDAEKADGWRPGGWQLIA--------YHAASGRLYVLM 256 (342)
T ss_dssp EBTT------SEEEEEEETTSS----EE--E----EEEEESS-HHHHHTTEEE-SSS-EE--------EETTTTEEEEEE
T ss_pred EecC------CEEEEEeccCCc----cc--c----cCcccccCccccccCcCCcceeeee--------eccccCeEEEEe
Confidence 5421 124445555311 00 0 0011110 11111 11111 122445666677
Q ss_pred EeCCC-----CceeEEEEeCCCCCCCceEEEEcCCc
Q 007605 545 HDENT-----GKSAVYVIDAKTMSADPVAVIELPHR 575 (596)
Q Consensus 545 ~d~~~-----~~S~L~IlDA~~~~~~pVArv~LP~r 575 (596)
|.... ...|+|++|.++= .-|+|+.|++.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~--krv~Ri~l~~~ 290 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTH--KRVARIPLEHP 290 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTT--EEEEEEEEEEE
T ss_pred cCCCCCCccCCceEEEEEECCCC--eEEEEEeCCCc
Confidence 76543 2469999999954 58999999753
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=52.55 E-value=98 Score=32.90 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=65.8
Q ss_pred CCeEEEEEecC----CceEEeeCCC-CCcccccccccCCCCCCCCCCCceecCCCCeEEEEeecCCCCeEEEEEecCCCC
Q 007605 234 HGKLLVLSEID----KPYVLKVLKD-GDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGF 308 (596)
Q Consensus 234 ~grLlAl~E~~----~Py~ld~~~~-~tLeTlG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~~~~~p~l~y~~~d~~G~ 308 (596)
++.|||..|.+ .=..+++.++ ++|+-+++..-.|. -..|-.+||....|+.-+|.. ..+..+.++.+|.
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~----~p~~i~~~~~g~~l~vany~~--g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS----SPCHIAVDPDGRFLYVANYGG--GSVSVFPLDDDGS 121 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS----CEEEEEECTTSSEEEEEETTT--TEEEEEEECTTSE
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC----CcEEEEEecCCCEEEEEEccC--CeEEEEEccCCcc
Confidence 46899998863 2334555545 67888887654332 245788899877777777753 4578888889998
Q ss_pred eeecEEE-ec---------CCccceeeeeeCC--CEEEEEeC
Q 007605 309 MHDPVPI-TM---------SAPIMMHDFAITE--NYAIFLDL 338 (596)
Q Consensus 309 ~~~~~~i-~l---------~~p~~~HDFaiTe--ny~V~~d~ 338 (596)
+.....+ .. ...+..|...++. +|++++|.
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl 163 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL 163 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence 7655332 11 2457889999984 58887774
No 10
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=50.00 E-value=3.7e+02 Score=29.20 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=71.9
Q ss_pred CCceEEeeCCCCCcccccccccCCCCCCCCCCCceecCCCCeEEEEeec-----CCCCeEEEEEecC-CCCeeecEEEec
Q 007605 244 DKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYT-----QTPPYVTYRVISK-DGFMHDPVPITM 317 (596)
Q Consensus 244 ~~Py~ld~~~~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~~-----~~~p~l~y~~~d~-~G~~~~~~~i~l 317 (596)
+.=|.||. .+++.+|..+-+ + ..|..+.|+-+++|....- .++--=.+.++|. .++..++.+++-
T Consensus 27 ~~v~ViD~---~~~~v~g~i~~G-~-----~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDG---EAGRVLGMTDGG-F-----LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEEC---CCCEEEEEEEcc-C-----CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 44577777 488888887643 2 3444567776777665441 1111234566665 456666555531
Q ss_pred -CC---ccceeeeeeCCCEEEEEeCCeecchhhhhhcCceeEEEcCCCCeEEEEEEccCCCCcceEEEEcCceeeeeccc
Q 007605 318 -SA---PIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNAN 393 (596)
Q Consensus 318 -~~---p~~~HDFaiTeny~V~~d~pl~~~~~~ml~~g~~~~~~d~~~~sr~~VipR~~~d~~~v~wfe~p~~f~fH~~N 393 (596)
|+ ..+-+.|+++.+ |+..+.++.+....+.||+-.+ ...++-+++|. |.|...
T Consensus 98 ~p~~~~~~~~~~~~ls~d-------------------gk~l~V~n~~p~~~V~VvD~~~--~kvv~ei~vp~--~~~vy~ 154 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPD-------------------NKTLLFYQFSPSPAVGVVDLEG--KAFVRMMDVPD--CYHIFP 154 (352)
T ss_pred CchhhccCccceEEECCC-------------------CCEEEEecCCCCCEEEEEECCC--CcEEEEEeCCC--CcEEEE
Confidence 12 446666777653 4556666766678899999876 35677788876 344444
Q ss_pred ccc
Q 007605 394 AWE 396 (596)
Q Consensus 394 A~E 396 (596)
+=|
T Consensus 155 t~e 157 (352)
T TIGR02658 155 TAN 157 (352)
T ss_pred ecC
Confidence 333
No 11
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=49.05 E-value=80 Score=34.28 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=44.7
Q ss_pred CCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCCCCCCcEEEEEE
Q 007605 465 GRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHV 544 (596)
Q Consensus 465 Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~~EDDGyLLs~V 544 (596)
....||+|.+..+ ..|.++|+.+.+... .... +.+|.=|.= ..|.-||++.-
T Consensus 45 s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~------------~i~~-----G~~~~~i~~------s~DG~~~~v~n 96 (369)
T PF02239_consen 45 SPDGRYLYVANRD-----GTVSVIDLATGKVVA------------TIKV-----GGNPRGIAV------SPDGKYVYVAN 96 (369)
T ss_dssp TT-SSEEEEEETT-----SEEEEEETTSSSEEE------------EEE------SSEEEEEEE--------TTTEEEEEE
T ss_pred cCCCCEEEEEcCC-----CeEEEEECCcccEEE------------EEec-----CCCcceEEE------cCCCCEEEEEe
Confidence 4557899998643 469999999633211 1222 233443332 13555888777
Q ss_pred EeCCCCceeEEEEeCCCCCCCceEEEEcC
Q 007605 545 HDENTGKSAVYVIDAKTMSADPVAVIELP 573 (596)
Q Consensus 545 ~d~~~~~S~L~IlDA~~~~~~pVArv~LP 573 (596)
+.+. .+.|||+++++ +|.++...
T Consensus 97 ~~~~----~v~v~D~~tle--~v~~I~~~ 119 (369)
T PF02239_consen 97 YEPG----TVSVIDAETLE--PVKTIPTG 119 (369)
T ss_dssp EETT----EEEEEETTT----EEEEEE--
T ss_pred cCCC----ceeEecccccc--ceeecccc
Confidence 6543 89999999886 88988764
No 12
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=26.97 E-value=1.7e+02 Score=20.26 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=20.0
Q ss_pred ceeEEEEeCCCCCCCceEEEEcCCcCCCCC
Q 007605 551 KSAVYVIDAKTMSADPVAVIELPHRVPYGF 580 (596)
Q Consensus 551 ~S~L~IlDA~~~~~~pVArv~LP~rVP~GF 580 (596)
...+.|||+++.+ .+.++.+ ..-|.++
T Consensus 13 ~~~v~~id~~~~~--~~~~i~v-g~~P~~i 39 (42)
T TIGR02276 13 SNTVSVIDTATNK--VIATIPV-GGYPFGV 39 (42)
T ss_pred CCEEEEEECCCCe--EEEEEEC-CCCCceE
Confidence 4488899998765 7888888 4666654
No 13
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.02 E-value=48 Score=33.59 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=29.9
Q ss_pred EEEeCCeEEEE-EecCCceEEeeCCCCCcccccccccCCC
Q 007605 230 LIYHHGKLLVL-SEIDKPYVLKVLKDGDLQTLGMLDYDKR 268 (596)
Q Consensus 230 v~~~~grLlAl-~E~~~Py~ld~~~~~tLeTlG~~d~~g~ 268 (596)
+..+++..++| |..+..|..|+ .||+++|++.|.|+
T Consensus 96 it~~gd~~y~LTw~egvaf~~d~---~t~~~lg~~~y~Ge 132 (262)
T COG3823 96 ITKLGDYFYQLTWKEGVAFKYDA---DTLEELGRFSYEGE 132 (262)
T ss_pred eeeccceEEEEEeccceeEEECh---HHhhhhcccccCCc
Confidence 45667888988 77888888888 49999999999775
No 14
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=21.68 E-value=55 Score=24.10 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=21.7
Q ss_pred EEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeC
Q 007605 523 VFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDA 559 (596)
Q Consensus 523 iFVPr~~~~~~~EDDGyLLs~V~d~~~~~S~L~IlDA 559 (596)
++||.+ .+||+++-|.+...++-.+...|.
T Consensus 4 vWvpD~-------~egfv~g~I~~~~g~~vtV~~~~G 33 (42)
T PF02736_consen 4 VWVPDP-------KEGFVKGEIIEEEGDKVTVKTEDG 33 (42)
T ss_dssp EEEEES-------SSSEEEEEEEEEESSEEEEEETTT
T ss_pred EEEeCC-------cccEEEEEEEEEcCCEEEEEECCC
Confidence 678874 569999999987666655555553
Done!