Query 007605
Match_columns 596
No_of_seqs 221 out of 1059
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 2E-133 8E-138 1112.5 49.3 506 67-594 6-528 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 2E-118 8E-123 986.2 46.1 449 102-586 20-489 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 5E-112 2E-116 944.1 38.2 461 97-587 7-533 (533)
4 1qks_A Cytochrome CD1 nitrite 41.8 1.9E+02 0.0065 31.5 12.5 106 435-573 180-285 (567)
5 3c75_H MADH, methylamine dehyd 20.6 7.3E+02 0.025 25.8 23.9 269 233-580 83-375 (426)
6 4guc_A Protein BA_2500; virule 15.6 4.1E+02 0.014 23.1 7.0 47 282-336 35-88 (120)
7 2iwa_A Glutamine cyclotransfer 15.3 3.1E+02 0.011 26.9 7.2 73 470-573 33-105 (266)
8 3mbr_X Glutamine cyclotransfer 14.1 3.3E+02 0.011 26.4 6.9 34 536-573 105-143 (243)
9 3sjl_D Methylamine dehydrogena 12.7 8.6E+02 0.029 25.0 10.1 107 435-573 62-179 (386)
10 2mad_H Methylamine dehydrogena 12.2 6.8E+02 0.023 25.0 9.0 20 552-573 97-116 (373)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=2.3e-133 Score=1112.46 Aligned_cols=506 Identities=39% Similarity=0.714 Sum_probs=460.1
Q ss_pred EeccCCCcchHHHHHHHHHHhhhhc-------ccCCCCCCcccccCCccccccCCCCCCceEeeecCCCCceEEEeecCC
Q 007605 67 AVNPKPQKGLAAKVIDFVEGLIVKF-------MHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPN 139 (596)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~~~~~~~~-------~~~~~~p~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPn 139 (596)
+.+++|.|++++++||++|++|++. +++++||+.+|+|||+||. |+++..+++|+|+||+||+|+|||||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~-ee~~~~~l~V~G~IP~~L~Gt~~RNGpn 84 (529)
T 3npe_A 6 KKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVG-ERPPVHELPVSGRIPPFIDGVYARNGAN 84 (529)
T ss_dssp --CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCC-CEEEEESCCEEECCCTTCEEEEEECCBC
T ss_pred cCCCChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCccccc-ccCCcccceEeecCCccCCceEEEecCC
Confidence 4578999999999999999999985 6889999999999999994 6666678999999999999999999999
Q ss_pred CCCCCCCccccccCCCcEEEEEEeCCcE-EEEEEEeechhhHHHHHhCCceeee-cCCCCChhhhHHHHHHHHhhhcccc
Q 007605 140 SKFAPVAGYHWFDGDGMLHGLRIKDGKA-AYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVL 217 (596)
Q Consensus 140 p~~~~~~~~H~FDGdGMlh~~~f~~G~a-~y~~RfVrT~~~~~E~~aG~~~~~~-~g~~~g~~g~~~~~~~~~r~~~g~~ 217 (596)
|+|.+..++||||||||||+|+|++|+| +|+||||||++|++|+++|+++|++ +|++++..++.+..+...|..++++
T Consensus 85 P~f~~~~~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (529)
T 3npe_A 85 PCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLV 164 (529)
T ss_dssp CSSCCSSCCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSC
T ss_pred cCcCCcCCCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccc
Confidence 9988888899999999999999999999 9999999999999999999999998 8988887777777777777777777
Q ss_pred ccCCCCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCcccccccccCCCCCCCCCCCceecCCCCeEEEEeecCC-CC
Q 007605 218 DFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQT-PP 296 (596)
Q Consensus 218 d~~~~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~~~~-~p 296 (596)
+...++++|||||++|+||||||||+|+||++++++++||||+|++||+|+|..+||||||+||.||||++|+|+.. +|
T Consensus 165 ~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p 244 (529)
T 3npe_A 165 DPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRP 244 (529)
T ss_dssp CGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSC
T ss_pred cccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCC
Confidence 76666899999999999999999999999999887767999999999999999999999999999999999999964 69
Q ss_pred eEEEEEecCCCCeeecEEEecCCccceeeeeeCCCEEEEEeCCeecchhhhhhcCceeEEEcCCCCeEEEEEEccCCCCc
Q 007605 297 YVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDL 376 (596)
Q Consensus 297 ~l~y~~~d~~G~~~~~~~i~l~~p~~~HDFaiTeny~V~~d~pl~~~~~~ml~~g~~~~~~d~~~~sr~~VipR~~~d~~ 376 (596)
+++|+++|++|++.+.++|+++.|+|||||||||||+||+++|+++|+.+|++ |+.++.|+|++++|||||||++++.+
T Consensus 245 ~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~-g~~~~~~~p~~~tr~~VipR~~~~~~ 323 (529)
T 3npe_A 245 YLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLR-GGSPVVLDAAKTSRFGVLPKHAADAS 323 (529)
T ss_dssp CCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTT-TCCSEEECTTSCCEEEEEETTCSSGG
T ss_pred cEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhC-CCCceEECCCCCcEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999987 67899999999999999999987667
Q ss_pred ceEEEEcCceeeeecccccccC-CCeEEEEEEecCCCCCcccCCcccccccccCccEEEEEEeCCCCceeEEeeCC----
Q 007605 377 QIRWFELPNCYIFHNANAWEEE-EDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSP---- 451 (596)
Q Consensus 377 ~v~wfe~p~~f~fH~~NA~Ee~-~deIvvd~~~~~~~~~~~~~g~~~~~~~~~~~~L~r~rinl~tg~v~~~~L~~---- 451 (596)
.++||++|+||+||++|||||+ +|+|||+.||+.+.+. .+. ...+.+.++|+|||||+++|+++++.|.+
T Consensus 324 ~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~-~~~----~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~ 398 (529)
T 3npe_A 324 EMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADS-IFN----ESDERLESVLTEIRLDARTGRSTRRAVLPPSQQ 398 (529)
T ss_dssp GCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCC-SCC----SSSSCCCCEEEEEEECTTTCCEEEEESSCSSSC
T ss_pred ceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchh-hhh----ccchhhccceEEEEEcCCCCCEEeEEecccccC
Confidence 8999999999999999999985 3789999999876541 111 11345678999999999999999998874
Q ss_pred CCCCCCccCCCCCCCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCC
Q 007605 452 ACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSS 531 (596)
Q Consensus 452 ~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~ 531 (596)
.++|||+||++|.||+|||+|+++.++++++++|+|+|+++ |+. +.||+|+|+|+|||+||||+++.
T Consensus 399 ~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~t----g~~---------~~~~~g~~~~~~EPvFVPrp~~~ 465 (529)
T 3npe_A 399 VNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLST----GEL---------TKFEYGEGRFGGEPCFVPMDPAA 465 (529)
T ss_dssp CCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTT----CCE---------EEEECCTTBCCCCCEEEECCSCS
T ss_pred ccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCC----Cce---------EEEEcCCCccccCCEeeeCCCCC
Confidence 89999999999999999999999988888899999999996 542 25899999999999999999710
Q ss_pred --CCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhh
Q 007605 532 --TSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA 594 (596)
Q Consensus 532 --~~~EDDGyLLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~~ 594 (596)
+.+|||||||++|||+.+++|+|+||||++|+ +|||++||+||||||||+|++++||++|+
T Consensus 466 ~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~--~vArv~LP~rvP~GfHG~wv~~~~l~~q~ 528 (529)
T 3npe_A 466 AHPRGEDDGYVLTFVHDERAGTSELLVVNAADMR--LEATVQLPSRVPFGFHGTFITGQELEAQA 528 (529)
T ss_dssp SSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTTE--EEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred CCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCCc--cceEEECCCCCCCCccccccCHHHhhhhh
Confidence 26899999999999999999999999999997 69999999999999999999999999996
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=2.3e-118 Score=986.22 Aligned_cols=449 Identities=26% Similarity=0.416 Sum_probs=396.2
Q ss_pred cccCCccccccCCCCCCceEeeecCCCCceEEEeecCCCCCCC-CCccccccCCCcEEEEEE-eCCcEEEEEEEeechhh
Q 007605 102 LSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFAP-VAGYHWFDGDGMLHGLRI-KDGKAAYVSRYVKTSRL 179 (596)
Q Consensus 102 l~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPnp~~~~-~~~~H~FDGdGMlh~~~f-~~G~a~y~~RfVrT~~~ 179 (596)
.+++|+|+.+|.. .....|+|+||+||+|+|||||||+++.+ ...+||||||||||+|+| ++|+|+|+||||||++|
T Consensus 20 ~~~~f~~~~~E~~-~~l~~V~G~IP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmlh~~~f~~~G~v~y~~R~v~T~~~ 98 (490)
T 2biw_A 20 WLRGYQSQPQEWD-YWVEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKFVRTQGY 98 (490)
T ss_dssp HHHTTSCCCSCEE-EECCCEEECCCTTCCEEEEECCBCCSEETTEECSSGGGSCBEEEEEEECSSSCCEEEEEECCCHHH
T ss_pred hhhhccCccccCC-cccceEEeCCCCCCCeEEEEeCCCcCcCCCCcccCccCCCCeEEEEEECCCCEEEEEcceEeCHHH
Confidence 3678999976764 34334999999999999999999997654 456799999999999999 99999999999999999
Q ss_pred HHHHHhCCceeee-cCCCCChhhhHHHHHHHHhhhccccccCCCCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCcc
Q 007605 180 KQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQ 258 (596)
Q Consensus 180 ~~E~~aG~~~~~~-~g~~~g~~g~~~~~~~~~r~~~g~~d~~~~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tLe 258 (596)
++|+++|+++|++ ||+..+.. .+ ...+ +. ..+|+|||+|++|+||||||||++.||+||+ +|||
T Consensus 99 ~~e~~ag~~~~~~~fg~~~~~~-~~-------~~~~---~~-~~~~~aNT~v~~~~g~llAl~E~~~p~~ldp---~tLe 163 (490)
T 2biw_A 99 VEEQKAGKMIYRGVFGSQPAGG-WL-------KTIF---DL-RLKNIANTNITYWGDRLLALWEGGQPHRLEP---SNLA 163 (490)
T ss_dssp HHHHHHTSCCSBCTTSCCCSST-HH-------HHTT---CC-CBCCCCCSEEEEETTEEEEECTTSCCEEECT---TTCC
T ss_pred HHHHHhCCcccccccccCCCCc-hh-------hhhc---cc-ccCCCCEEEEEEECCEEEEEEcCCCCEeccc---cccc
Confidence 9999999999999 99876531 11 1111 11 1369999999999999999999999999998 5999
Q ss_pred cccccccCCCC-C-CCCCCCceecCC------CCeEEEEeecCCCCe-EEEEEecCCCCeeecEEEecCCccceeeeeeC
Q 007605 259 TLGMLDYDKRL-N-HPFTAHPKIDPY------TDEMFTFGYTQTPPY-VTYRVISKDGFMHDPVPITMSAPIMMHDFAIT 329 (596)
Q Consensus 259 TlG~~d~~g~l-~-~~~tAHPk~Dp~------TGel~~f~~~~~~p~-l~y~~~d~~G~~~~~~~i~l~~p~~~HDFaiT 329 (596)
|+|++||+|+| . .+||||||+||. ||||++|+|+..+++ ++|+++|++|++.+.+++++|.|+||||||||
T Consensus 164 T~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfaiT 243 (490)
T 2biw_A 164 TIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAIT 243 (490)
T ss_dssp EEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEECTTSCEEEEEEEEEESCCCCCCCEEC
T ss_pred EeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEECCCCCEEeeEEEeCCCCceEeeeecc
Confidence 99999999999 5 489999999999 999999999876555 89999999999999999999999999999999
Q ss_pred CCEEEEEeCCeecchhhhhhcC---ceeEEEcCCCCeEEEEEEccCCCCcceEEEEcCceeeeecccccccCCCeEEEEE
Q 007605 330 ENYAIFLDLPMCFRQKEMVKEN---KLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLIT 406 (596)
Q Consensus 330 eny~V~~d~pl~~~~~~ml~~g---~~~~~~d~~~~sr~~VipR~~~d~~~v~wfe~p~~f~fH~~NA~Ee~~deIvvd~ 406 (596)
|||+||+++|+++++.+|++++ ..++.|+|++++|||||||+ .+.++||++|+||+||++|||||+ |+||+|+
T Consensus 244 eny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~---~~~v~~f~~~~~f~fH~~NA~Ee~-~~Iv~d~ 319 (490)
T 2biw_A 244 PHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD---GGEIKRIPVQAGFVFHHANAFEEN-GKIILDS 319 (490)
T ss_dssp SSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT---SCCCEEEEECCCEEEEEEEEEEET-TEEEEEE
T ss_pred CCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC---CCccEEEecCCCeEEecccceecC-CeEEEEE
Confidence 9999999999999999998643 35799999999999999998 356999999999999999999997 8999999
Q ss_pred EecCCCCC-cccCCcccc--cccccCccEEEEEEeCCCCceeEEeeCCCCCCCCccCCCCCCCCCCeEEEeccc---ccC
Q 007605 407 CRVRNPDL-DMFNGPLKE--TLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILE---NIA 480 (596)
Q Consensus 407 ~~~~~~~~-~~~~g~~~~--~~~~~~~~L~r~rinl~tg~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~---~~~ 480 (596)
|++++.++ +... ...+ ......++|+||||||++|+++++.|++.++|||+||++|.||+|||+|+++.+ +++
T Consensus 320 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~~~~~ 398 (490)
T 2biw_A 320 ICYNSLPQVDTDG-DFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNA 398 (490)
T ss_dssp EEESCCCCCCTTC-CGGGCCGGGSCCCEEEEEEEETTTTEEEEEEEECSCEEEEECCGGGTTSCCSEEEEEECSSSSSCC
T ss_pred eccCCcccccccc-cccccccccCCCceEEEEEEECCCCceEEEeccCCcccccccChhhCCceeeeEEEEeecCCCCCC
Confidence 99987653 1111 1111 123456899999999999999999999999999999999999999999999875 456
Q ss_pred CCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCC
Q 007605 481 KVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAK 560 (596)
Q Consensus 481 ~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~~EDDGyLLs~V~d~~~~~S~L~IlDA~ 560 (596)
++++|+|+|+++ |+. +.|++|+|+|+|||+||||+++ .+|||||||++|||+++++|+|+||||+
T Consensus 399 ~~~~l~K~D~~t----g~~---------~~~~~g~g~~~~EPvFVPrp~~--~~EDDG~ll~~V~d~~~~~S~l~IlDA~ 463 (490)
T 2biw_A 399 PLQAILKVDLES----GTE---------TLRSFAPHGFAGEPIFVPRPGG--VAEDDGWLLCLIYKADLHRSELVILDAQ 463 (490)
T ss_dssp CCCEEEEEETTT----TEE---------EEEECTTTEECCCCEEEECTTC--CSTTCEEEEEEEEETTTTEEEEEEEETT
T ss_pred CCCeEEEEECCC----CCE---------EEEECCCCccccCCEEecCCCC--CCCCCcEEEEEEEeCCCCceeEEEEccC
Confidence 799999999996 553 3688999999999999999975 7899999999999999999999999999
Q ss_pred CCCCCceEEEEcCCcCCCCCCccccC
Q 007605 561 TMSADPVAVIELPHRVPYGFHGIFLS 586 (596)
Q Consensus 561 ~~~~~pVArv~LP~rVP~GFHG~fv~ 586 (596)
+|+++||||++||+||||||||+|++
T Consensus 464 ~~~~~pvArv~lP~rvP~GfHG~wv~ 489 (490)
T 2biw_A 464 DITAPAIATLKLKHHIPYPLHGSWAQ 489 (490)
T ss_dssp CTTSCCSEEEECSSCCCCCCCEEEEE
T ss_pred CCCcCceEEEeCCCcCCCCccccccC
Confidence 99999999999999999999999986
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=5.4e-112 Score=944.05 Aligned_cols=461 Identities=19% Similarity=0.288 Sum_probs=363.8
Q ss_pred CCCcccccCCccccccCCCCCCceEeeecCCCCceEEEeecCCCCCC-CCCccccccCCCcEEEEEEeCCcEEEEEEEee
Q 007605 97 RPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFA-PVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVK 175 (596)
Q Consensus 97 ~p~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPnp~~~-~~~~~H~FDGdGMlh~~~f~~G~a~y~~RfVr 175 (596)
.|..-++.+|+|+ +|+++...++|+|+||+||+|+|||||||++.. +...+||||||||||+|+|++|+|+|+|||||
T Consensus 7 ~~~~~~~~~f~~~-~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~G~v~y~~R~v~ 85 (533)
T 3kvc_A 7 HPAGGYKKLFETV-EELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIR 85 (533)
T ss_dssp CTTCGGGGGGSCC-CCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEETTEEEEEEEECC
T ss_pred cCcchhhhhcCcc-cccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeCCEEEEEEEEec
Confidence 3455578899999 788777778999999999999999999998643 34568999999999999999999999999999
Q ss_pred chhhHHHHHhCCceeeecCCCCChhhhHHHHHHHHhhhccccccCCCCCCcceEEEEeCCeEEEEEecCCceEEeeCCCC
Q 007605 176 TSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDG 255 (596)
Q Consensus 176 T~~~~~E~~aG~~~~~~~g~~~g~~g~~~~~~~~~r~~~g~~d~~~~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~ 255 (596)
|++|++|+++|+++|.+||+.... +.+...+..+... +.....+++|||||++|+||||||||++.||+||+ .
T Consensus 86 T~~~~~e~~agr~~~~~fg~~~~~-~p~~~~~~~~~~~---~~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp---~ 158 (533)
T 3kvc_A 86 TDAYVRAMTEKRIVITEFGTCAFP-DPCKNIFSRFFSY---FRGVEVTDNALVNIYPVGEDYYACTETNFITKVNP---E 158 (533)
T ss_dssp CHHHHHHHHHTSCCSCBTTBCC-----------------------CCCCCCCSEEEEETTEEEEECSSSEEEEECT---T
T ss_pred CHHHHHHHHcCCcceeccCcccCC-cchhhHHHHHHHh---hccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeCh---H
Confidence 999999999999999999885311 0000111111111 11112468999999999999999999999999998 4
Q ss_pred CcccccccccCCCCC-CCCCCCceecCCCCeEEEEeecCCCC-eEEEE--EecCC-----CCe-eecEE--Ee---cCCc
Q 007605 256 DLQTLGMLDYDKRLN-HPFTAHPKIDPYTDEMFTFGYTQTPP-YVTYR--VISKD-----GFM-HDPVP--IT---MSAP 320 (596)
Q Consensus 256 tLeTlG~~d~~g~l~-~~~tAHPk~Dp~TGel~~f~~~~~~p-~l~y~--~~d~~-----G~~-~~~~~--i~---l~~p 320 (596)
||||+|++||+|+|. ..||||||+|| |||||+|||+..++ +..|. .++++ +.+ ..++. |+ ++.|
T Consensus 159 tLeT~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p 237 (533)
T 3kvc_A 159 TLETIKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKP 237 (533)
T ss_dssp TCCEEEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCC
T ss_pred HcccccccccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCC
Confidence 999999999999997 58999999999 99999999987643 33333 34433 222 22232 32 4589
Q ss_pred cceeeeeeCCCEEEEEeCCeecchhhhhhc----Cc---eeEEEcCCCCeEEEEEEccCCCCcceEEEEcCceeeeeccc
Q 007605 321 IMMHDFAITENYAIFLDLPMCFRQKEMVKE----NK---LIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNAN 393 (596)
Q Consensus 321 ~~~HDFaiTeny~V~~d~pl~~~~~~ml~~----g~---~~~~~d~~~~sr~~VipR~~~d~~~v~wfe~p~~f~fH~~N 393 (596)
+|||||||||||+||+++|+++|+.+|+++ +. .++.|+|++++|||||||++++ ..++||++|+||+||++|
T Consensus 238 ~~iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~-~~~~~~~~~~~f~fH~~N 316 (533)
T 3kvc_A 238 SYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKK-YINNKYRTSPFNLFHHIN 316 (533)
T ss_dssp BCCCCCEECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTE-EEEEEEEECCEEEEEEEE
T ss_pred ceeeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCC-cccEEEEeCCeeEEeeee
Confidence 999999999999999999999999999875 33 3699999999999999999743 335889999999999999
Q ss_pred ccccCCCeEEEEEEecCC-CCC-c-----ccCCc---ccc-cccccCccEEEEEEeCCCC--------------------
Q 007605 394 AWEEEEDEVVLITCRVRN-PDL-D-----MFNGP---LKE-TLEDQTTELYEMRFNMKTG-------------------- 442 (596)
Q Consensus 394 A~Ee~~deIvvd~~~~~~-~~~-~-----~~~g~---~~~-~~~~~~~~L~r~rinl~tg-------------------- 442 (596)
||||+ |+||+|.|++++ .++ + .+... +.+ ......++|+||||||+++
T Consensus 317 A~Ee~-~~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~ 395 (533)
T 3kvc_A 317 TYEDH-EFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAIL 395 (533)
T ss_dssp EEEET-TEEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEE
T ss_pred eEEeC-CEEEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeee
Confidence 99987 899999999987 442 1 11110 000 0113567899999999875
Q ss_pred ----c--eeEEeeCC--C-CCCCCccCC-CCCCCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEE
Q 007605 443 ----L--ASQKKLSP--A-CVDFPRINE-HYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFD 512 (596)
Q Consensus 443 ----~--v~~~~L~~--~-~~EfP~In~-~~~Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~ 512 (596)
+ ++++.|++ . ++|||+||+ +|.||+|||+|+++.+ .+++++|+|+|+++ |+. ..|
T Consensus 396 ~~~~~~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~-~~~~~~l~K~D~~t----g~~----------~~w 460 (533)
T 3kvc_A 396 CSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLN-HFVPDRLCKLNVKT----KET----------WVW 460 (533)
T ss_dssp CTTSEEEEECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEE-TTEEEEEEEEETTT----CCE----------EEE
T ss_pred ccCCceeeeeeeeccCCcccccCceECHHHhCCCcccEEEEeccC-CCCCceeEEEEcCC----CCE----------EEE
Confidence 1 34667774 6 899999998 7999999999999876 46789999999996 543 246
Q ss_pred cCCCccCcceEEeeCCCCCCCCCCCcEEEEEEEeCCC--CceeEEEEeCCCCCCCceEEEEcCCcCCCCCCccccCh
Q 007605 513 LGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENT--GKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSE 587 (596)
Q Consensus 513 ~g~g~~~~EPiFVPr~~~~~~~EDDGyLLs~V~d~~~--~~S~L~IlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~ 587 (596)
+++|+|+|||+||||+++ .+|||||||++|||+.+ ++|+|+||||++|+ +||||+||+||||||||+|+++
T Consensus 461 ~~~~~~~~EPiFVPrp~~--~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~--~vArv~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 461 QEPDSYPSEPIFVSHPDA--LEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLS--EVARAEVEINIPVTFHGLFKKS 533 (533)
T ss_dssp CCTTCBCCCCEEEECTTC--CSTTCEEEEEEEECCSTTSCSEEEEEEETTTCC--EEEEEEESSCCCCCCEEEEEEC
T ss_pred eCCCccccCceeecCCCC--CCCCCcEEEEEEEeCCcCCCccEEEEEeCCCCh--hhEEEEeCCCCCCCccccccCC
Confidence 799999999999999875 78999999999999986 55799999999997 6999999999999999999863
No 4
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=41.80 E-value=1.9e+02 Score=31.51 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=57.3
Q ss_pred EEEeCCCCceeEEeeCCCCCCCCccCCCCCCCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcC
Q 007605 435 MRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLG 514 (596)
Q Consensus 435 ~rinl~tg~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g 514 (596)
..||+.|+++..+.-.........+.+ ..||+|.+..+ +.|..+|+.+. +++.. ....
T Consensus 180 ~viD~~t~~v~~~i~~g~~p~~v~~Sp-----DGr~lyv~~~d-----g~V~viD~~~~--t~~~v----------~~i~ 237 (567)
T 1qks_A 180 ALIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGRD-----GKVNMIDLWMK--EPTTV----------AEIK 237 (567)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEETT-----SEEEEEETTSS--SCCEE----------EEEE
T ss_pred EEEECCCCeEEEEEeCCCCccceEECC-----CCCEEEEEcCC-----CeEEEEECCCC--CCcEe----------EEEe
Confidence 456777777654433322222233333 56799976532 47999999621 12211 1111
Q ss_pred CCccCcceEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcC
Q 007605 515 PGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 573 (596)
Q Consensus 515 ~g~~~~EPiFVPr~~~~~~~EDDGyLLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP 573 (596)
. +.+|.-+.=..- ..-|.-||++.-.+. ..+.|||+.+++ +++++.+.
T Consensus 238 ~---G~~P~~ia~s~~--~~pDGk~l~v~n~~~----~~v~ViD~~t~~--~~~~i~~~ 285 (567)
T 1qks_A 238 I---GSEARSIETSKM--EGWEDKYAIAGAYWP----PQYVIMDGETLE--PKKIQSTR 285 (567)
T ss_dssp C---CSEEEEEEECCS--TTCTTTEEEEEEEET----TEEEEEETTTCC--EEEEEECC
T ss_pred c---CCCCceeEEccc--cCCCCCEEEEEEccC----CeEEEEECCCCc--EEEEEecc
Confidence 1 234544433200 001445877765543 468899999876 88988875
No 5
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=20.63 E-value=7.3e+02 Score=25.82 Aligned_cols=269 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred eCCeEEEEEecC-----CceEEeeCCCCCcccccccccCCCCCCCCCCCceecCCCCeEEEEeecCCC-----CeEEEEE
Q 007605 233 HHGKLLVLSEID-----KPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTP-----PYVTYRV 302 (596)
Q Consensus 233 ~~grLlAl~E~~-----~Py~ld~~~~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~~~~~-----p~l~y~~ 302 (596)
.+.++|...+.. .=+.||+ .|++.+++..- +..- |-.++|+...+|.-++.... .--.+.+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~---~t~~vv~~I~v-----G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsv 153 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDG---STGRILGMTDG-----GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEV 153 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEET---TTTEEEEEEEE-----CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEEC---CCCEEEEEEEC-----CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEE
Q ss_pred ecC-CCCeeecEEEe-cCCc---cceeeeeeCCCEEEEEeCCeecchhhhhhcCceeEEEcCCCCeEEEEEEccCCCCcc
Q 007605 303 ISK-DGFMHDPVPIT-MSAP---IMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQ 377 (596)
Q Consensus 303 ~d~-~G~~~~~~~i~-l~~p---~~~HDFaiTeny~V~~d~pl~~~~~~ml~~g~~~~~~d~~~~sr~~VipR~~~d~~~ 377 (596)
+|. .+++...+++. -++. ...|.++++.+ |+..+..+......+.||+-.+ ...
T Consensus 154 iD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD-------------------Gk~lyV~n~~~~~~VsVID~~t--~kv 212 (426)
T 3c75_H 154 FDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD-------------------NKNLLFYQFSPAPAVGVVDLEG--KTF 212 (426)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT-------------------SSEEEEEECSSSCEEEEEETTT--TEE
T ss_pred EECCCCcEEEEEECCCccccccCCCcceEEEcCC-------------------CCEEEEEecCCCCeEEEEECCC--CeE
Q ss_pred eEEEEcCceeeeecccccccCCCeEEEEEEecCCCCCcccCCcccccccccCccEEEEEEeCCCCceeEEeeCCCCCCCC
Q 007605 378 IRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFP 457 (596)
Q Consensus 378 v~wfe~p~~f~fH~~NA~Ee~~deIvvd~~~~~~~~~~~~~g~~~~~~~~~~~~L~r~rinl~tg~v~~~~L~~~~~EfP 457 (596)
++.+.++.| ...+.++ ....+-.|.-. ..+.+++.++++....- ...+..
T Consensus 213 v~~I~v~g~-----~~~~p~g-~~~~v~~~~dG----------------------~~~~V~~~~~~v~~~~~--~~~~v~ 262 (426)
T 3c75_H 213 DRMLDVPDC-----YHIFPAS-PTVFYMNCRDG----------------------SLARVDFADGETKVTNT--EVFHTE 262 (426)
T ss_dssp EEEEECCSE-----EEEEEEE-TTEEEEEETTS----------------------SEEEEECCTTCCEEEEC--CCCSCT
T ss_pred EEEEEcCCc-----eeeccCC-CcEEEEEcCCC----------------------CEEEEECCCCcEEEEee--eeeccC
Q ss_pred c----cCCCCCCCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCC
Q 007605 458 R----INEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTS 533 (596)
Q Consensus 458 ~----In~~~~Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~ 533 (596)
. ++..|.....++.|.... +.+.-+|+.....+-... |............---......-
T Consensus 263 ~~p~~~~~~~~~dg~~~~~~s~~------g~V~ViD~~~~~~~v~~~----------~~~~~~~~i~~g~~p~g~~~va~ 326 (426)
T 3c75_H 263 DELLINHPAFSLRSGRLVWPTYT------GKIFQADLTAEGATFRAP----------IEALTEAERADDWRPGGWQQTAY 326 (426)
T ss_dssp TSCBCSCCEECTTTCEEEEEBTT------SEEEEEEECSSCEEECCC----------EESSCTTTGGGTEEECSSSCEEE
T ss_pred CCceeeEeeecCCCCEEEEEeCC------CcEEEEeccCCceEEeee----------eeeccccccccccccCCceeeEE
Q ss_pred CCCCcEEEEEEEeCCCCc-----eeEEEEeCCCCCCCceEEEEcCCcCCCCC
Q 007605 534 EEDDGYLIFHVHDENTGK-----SAVYVIDAKTMSADPVAVIELPHRVPYGF 580 (596)
Q Consensus 534 ~EDDGyLLs~V~d~~~~~-----S~L~IlDA~~~~~~pVArv~LP~rVP~GF 580 (596)
+.|.+.|.+..++...+. .+|.|||+++.+ .|+++.++.+ |.|+
T Consensus 327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~vg~~-P~gi 375 (426)
T 3c75_H 327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIELGHE-IDSI 375 (426)
T ss_dssp EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEEEE-ECEE
T ss_pred cCCCCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEEECCCC-cCeE
No 6
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=15.60 E-value=4.1e+02 Score=23.14 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=32.6
Q ss_pred CCCeEEEEeecCC---CCeEEEEEec----CCCCeeecEEEecCCccceeeeeeCCCEEEEE
Q 007605 282 YTDEMFTFGYTQT---PPYVTYRVIS----KDGFMHDPVPITMSAPIMMHDFAITENYAIFL 336 (596)
Q Consensus 282 ~TGel~~f~~~~~---~p~l~y~~~d----~~G~~~~~~~i~l~~p~~~HDFaiTeny~V~~ 336 (596)
.||..|.+..... .--+.+++++ ++|.+++-.. |||+..++||.+|-
T Consensus 35 ktGdtf~it~~~~~~d~g~~KIyrv~~~~~~~g~L~RYkT--------I~d~~~~~~~~~f~ 88 (120)
T 4guc_A 35 KHGDTFDVTIYTGGKDTGIVKIYQLSGNENDEINLHRYKT--------IYDSGLKHNYGRFV 88 (120)
T ss_dssp ETTCEEEEEEECCSSBCCEEEEEEECSCTTCSCCEEEEEE--------EECCCCCTTEEEEE
T ss_pred ccCCEEEEEEEcCCCccceEEEEEEccCCCCCcceEEEEE--------eccCCCcCCeeEEE
Confidence 4888888877532 1237777775 5688887554 48888899988774
No 7
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=15.35 E-value=3.1e+02 Score=26.86 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=38.6
Q ss_pred eEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCCCCCCcEEEEEEEeCCC
Q 007605 470 YVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENT 549 (596)
Q Consensus 470 Y~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~~EDDGyLLs~V~d~~~ 549 (596)
..|-+... ..-+.|.++|+.+ ++.. .....+++.|+ |- +.+. + +. .++.+.
T Consensus 33 ~Lyvstg~--~~~s~v~~iD~~t----g~v~--------~~i~l~~~~fg-eG-i~~~--g-----~~----lyv~t~-- 83 (266)
T 2iwa_A 33 TLFESTGL--YGRSSVRQVALQT----GKVE--------NIHKMDDSYFG-EG-LTLL--N-----EK----LYQVVW-- 83 (266)
T ss_dssp EEEEEECS--TTTCEEEEEETTT----CCEE--------EEEECCTTCCE-EE-EEEE--T-----TE----EEEEET--
T ss_pred eEEEECCC--CCCCEEEEEECCC----CCEE--------EEEecCCCcce-EE-EEEe--C-----CE----EEEEEe--
Confidence 67766532 1236799999996 4421 12334444343 21 2222 1 11 222232
Q ss_pred CceeEEEEeCCCCCCCceEEEEcC
Q 007605 550 GKSAVYVIDAKTMSADPVAVIELP 573 (596)
Q Consensus 550 ~~S~L~IlDA~~~~~~pVArv~LP 573 (596)
....+.|+|+++++ .++++..+
T Consensus 84 ~~~~v~viD~~t~~--v~~~i~~g 105 (266)
T 2iwa_A 84 LKNIGFIYDRRTLS--NIKNFTHQ 105 (266)
T ss_dssp TCSEEEEEETTTTE--EEEEEECC
T ss_pred cCCEEEEEECCCCc--EEEEEECC
Confidence 33467888888775 67777766
No 8
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=14.05 E-value=3.3e+02 Score=26.42 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=22.5
Q ss_pred CCcEEEEEEEeCC-----CCceeEEEEeCCCCCCCceEEEEcC
Q 007605 536 DDGYLIFHVHDEN-----TGKSAVYVIDAKTMSADPVAVIELP 573 (596)
Q Consensus 536 DDGyLLs~V~d~~-----~~~S~L~IlDA~~~~~~pVArv~LP 573 (596)
.+||=|+ +|.. .+.+.|.++|+++++ +++++++-
T Consensus 105 ~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~--~~~~I~V~ 143 (243)
T 3mbr_X 105 GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ--QVGSIKVT 143 (243)
T ss_dssp SCCCEEE--ECSSCEEEECSSSEEEEECTTTCC--EEEEEECE
T ss_pred CCceEEe--eCCCEEEEECCCCeEEEEeCCCCe--EEEEEEEc
Confidence 3566554 4432 245688888888876 78888775
No 9
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=12.68 E-value=8.6e+02 Score=24.99 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred EEEeCCCCceeEEeeCCCCCCCCccCCCCCCCCCCeEEEecccccCCCCe-----EEEEecccCCccCceeeeecCceee
Q 007605 435 MRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTG-----MIKFDLRAEPETGKTKLEVGGNVKG 509 (596)
Q Consensus 435 ~rinl~tg~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~g-----i~K~Dl~~~~~~g~~~~~v~~~~~~ 509 (596)
+.||+.|+++..+.=....-. -.+++ ..|++|.+..-......| |..+|..+....++
T Consensus 62 ~ViD~~t~~v~~~I~vG~~P~-va~sp-----DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~----------- 124 (386)
T 3sjl_D 62 FVIDGEAGRVIGMIDGGFLPN-PVVAD-----DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTAD----------- 124 (386)
T ss_dssp EEEETTTTEEEEEEEECSSCE-EEECT-----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE-----------
T ss_pred EEEECCCCeEEEEEECCCCCc-EEECC-----CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEE-----------
Q ss_pred EEEcCC------CccCcceEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcC
Q 007605 510 IFDLGP------GRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 573 (596)
Q Consensus 510 ~~~~g~------g~~~~EPiFVPr~~~~~~~EDDGyLLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP 573 (596)
...+. |..+..-.|-|...- .+|-+. .....+.|||+.+.+ .++++.+|
T Consensus 125 -I~v~~g~r~~~g~~P~~~a~spDGk~-----------lyVan~-~~~~~VsVID~~t~~--vv~tI~v~ 179 (386)
T 3sjl_D 125 -IELPDAPRFLVGTYPWMTSLTPDGKT-----------LLFYQF-SPAPAVGVVDLEGKA--FKRMLDVP 179 (386)
T ss_dssp -EEETTCCCCCBSCCGGGEEECTTSSE-----------EEEEEC-SSSCEEEEEETTTTE--EEEEEECC
T ss_pred -EECCCccccccCCCCceEEEcCCCCE-----------EEEEEc-CCCCeEEEEECCCCc--EEEEEECC
No 10
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=12.17 E-value=6.8e+02 Score=25.05 Aligned_cols=20 Identities=50% Similarity=0.635 Sum_probs=16.7
Q ss_pred eeEEEEeCCCCCCCceEEEEcC
Q 007605 552 SAVYVIDAKTMSADPVAVIELP 573 (596)
Q Consensus 552 S~L~IlDA~~~~~~pVArv~LP 573 (596)
..+.++|+++++ +++++.++
T Consensus 97 ~~v~viD~~t~~--~~~~i~~~ 116 (373)
T 2mad_H 97 DYVEVFDPVTFL--PIADIELP 116 (373)
T ss_pred CeEEEEECCCCc--EEEEEECC
Confidence 357799999776 89999987
Done!