Query 007605
Match_columns 596
No_of_seqs 221 out of 1059
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 05:57:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007605.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007605hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 35.3 6.1 0.00045 24.9 1.0 15 278-292 3-17 (31)
2 d1bhga2 b.18.1.5 (A:22-225) be 21.0 67 0.0049 27.8 6.0 29 224-252 104-133 (204)
3 d1yq2a3 b.18.1.5 (A:4-219) bet 20.0 85 0.0062 27.4 6.6 58 164-252 113-171 (216)
4 d1qksa2 b.70.2.1 (A:136-567) C 16.2 55 0.004 31.4 4.6 33 539-573 381-413 (432)
5 d1jz8a3 b.18.1.5 (A:13-219) be 13.7 2.5E+02 0.018 23.8 8.1 27 226-252 135-162 (207)
6 d1hzua2 b.70.2.1 (A:118-543) C 12.8 65 0.0047 30.3 3.9 33 539-573 375-407 (426)
7 d1m7ja2 b.92.1.6 (A:420-480) N 12.2 22 0.0016 25.4 -0.0 35 552-588 8-42 (61)
8 d2je8a4 b.18.1.5 (A:28-219) Be 10.3 1.7E+02 0.012 24.6 5.6 29 224-252 86-115 (192)
9 d3dm8a1 d.17.4.20 (A:1-135) Un 9.5 1.4E+02 0.01 23.0 4.4 31 156-187 105-135 (135)
10 d1qfma1 b.69.7.1 (A:1-430) Pro 8.5 6.7E+02 0.049 22.8 14.8 67 360-449 356-422 (430)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=35.32 E-value=6.1 Score=24.93 Aligned_cols=15 Identities=27% Similarity=0.844 Sum_probs=12.5
Q ss_pred eecCCCCeEEEEeec
Q 007605 278 KIDPYTDEMFTFGYT 292 (596)
Q Consensus 278 k~Dp~TGel~~f~~~ 292 (596)
++||+|||+|-.-|+
T Consensus 3 R~DP~TG~iYH~~f~ 17 (31)
T d1zaka2 3 RLDPVTGKIYHLKYS 17 (31)
T ss_dssp EECTTTCCEEESSSS
T ss_pred cCCCCCCcEeEEecC
Confidence 579999999977765
No 2
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.96 E-value=67 Score=27.75 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.3
Q ss_pred CCcceEEEEeCCeEEEEEecCC-ceEEeeC
Q 007605 224 GAGNTALIYHHGKLLVLSEIDK-PYVLKVL 252 (596)
Q Consensus 224 ~~ANT~v~~~~grLlAl~E~~~-Py~ld~~ 252 (596)
++...+-++.||++++..+++. |+++|++
T Consensus 104 gv~~~a~V~lNG~~vG~~~~~~~p~~~DIT 133 (204)
T d1bhga2 104 SAHSYAIVWVNGVDTLEHEGGYLPFEADIS 133 (204)
T ss_dssp CCCSEEEEECSSSEEEEEESSSCCEEECSS
T ss_pred CccEeeEEEECCEEeeeeccceeeEEEEch
Confidence 4566678999999999988775 9999996
No 3
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]}
Probab=20.03 E-value=85 Score=27.45 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=41.7
Q ss_pred CCcEEEEEEEeechhhHHHHHhCCceeeecCCCCChhhhHHHHHHHHhhhccccccCCCCCCcceEEEEeCCeEEEEEec
Q 007605 164 DGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEI 243 (596)
Q Consensus 164 ~G~a~y~~RfVrT~~~~~E~~aG~~~~~~~g~~~g~~g~~~~~~~~~r~~~g~~d~~~~~~~ANT~v~~~~grLlAl~E~ 243 (596)
+|.+.|+..|.-..... ...|+.++..|+ +....+-+|.||++++..++
T Consensus 113 ~~~gwYr~~f~~p~~~~--~~~gk~i~L~F~-----------------------------gv~~~a~V~vNG~~vG~~~g 161 (216)
T d1yq2a3 113 NPTGDFRRRFDVPAQWF--ESTTAALTLRFD-----------------------------GVESRYKVWVNGQEIGVGSG 161 (216)
T ss_dssp CCEEEEEEEEEECGGGG--STTEEEEEEEES-----------------------------CEESCEEEEETTEEEEEECC
T ss_pred CCccceEEEEEeccccc--ccCCcEEEEEEc-----------------------------ccceeEEEEECCEEEeEEcC
Confidence 45678888887766543 345666665443 23445688999999999998
Q ss_pred CC-ceEEeeC
Q 007605 244 DK-PYVLKVL 252 (596)
Q Consensus 244 ~~-Py~ld~~ 252 (596)
+. |+++|++
T Consensus 162 gy~pf~~DiT 171 (216)
T d1yq2a3 162 SRLAQEFDVS 171 (216)
T ss_dssp TTSCEEEECT
T ss_pred CeEEEEEECh
Confidence 86 9999996
No 4
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=16.19 E-value=55 Score=31.37 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=26.2
Q ss_pred EEEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcC
Q 007605 539 YLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 573 (596)
Q Consensus 539 yLLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP 573 (596)
+|++-+....+..+.++|+|+++++ ..++++-|
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T~k--~~~~i~~~ 413 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKTLE--LKHVIKDE 413 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTE--EEEEECCT
T ss_pred EEEEEEecCCCCCCcEEEEECCCce--EEeEecCC
Confidence 7777777766778899999999886 56777665
No 5
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]}
Probab=13.73 E-value=2.5e+02 Score=23.84 Aligned_cols=27 Identities=7% Similarity=0.238 Sum_probs=23.0
Q ss_pred cceEEEEeCCeEEEEEecCC-ceEEeeC
Q 007605 226 GNTALIYHHGKLLVLSEIDK-PYVLKVL 252 (596)
Q Consensus 226 ANT~v~~~~grLlAl~E~~~-Py~ld~~ 252 (596)
...+-++.||++++..|++. |+++|++
T Consensus 135 ~~~a~V~vNG~~vG~~~gg~~pf~fDiT 162 (207)
T d1jz8a3 135 NSAFHLWCNGRWVGYGQDSRLPSEFDLS 162 (207)
T ss_dssp ESEEEEEETTEEEEEEECTTSCEEEECT
T ss_pred ceEEEEEECCEEEEEecCCCcCEEEeCh
Confidence 44567899999999999886 9999996
No 6
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.84 E-value=65 Score=30.25 Aligned_cols=33 Identities=33% Similarity=0.447 Sum_probs=25.4
Q ss_pred EEEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcC
Q 007605 539 YLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 573 (596)
Q Consensus 539 yLLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP 573 (596)
+|++.+.......+.+.|+|+++++ .++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k--~~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLK--LKAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTE--EEEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCCe--EEEEECCC
Confidence 6777777666777889999999886 66777654
No 7
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=12.22 E-value=22 Score=25.41 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=27.9
Q ss_pred eeEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChh
Q 007605 552 SAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEE 588 (596)
Q Consensus 552 S~L~IlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~ 588 (596)
..|+|||..++.. -|..+-|...+-|++..||...
T Consensus 8 ADlvvfDp~~i~d--~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 8 ADLVVFDPATVAD--SATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp CCEEEECTTTCBC--CCCSSSTTCCCBSEEEEEETTE
T ss_pred CCEEEECHHHccC--cccccccccccceeEEEEECCE
Confidence 4788999988764 3777788889999999998754
No 8
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=10.34 E-value=1.7e+02 Score=24.57 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.6
Q ss_pred CCcceEEEEeCCeEEEEEecCC-ceEEeeC
Q 007605 224 GAGNTALIYHHGKLLVLSEIDK-PYVLKVL 252 (596)
Q Consensus 224 ~~ANT~v~~~~grLlAl~E~~~-Py~ld~~ 252 (596)
++.-.+-++.||++++-.+++- ||++|++
T Consensus 86 gv~~~a~V~vNG~~vG~h~g~f~~f~~DIT 115 (192)
T d2je8a4 86 GLDTYADVYLNGSLLLKADNMFVGYTLPVK 115 (192)
T ss_dssp CCBSEEEEEETTEEEEEECBTTCCEEEECG
T ss_pred CcceeeEEEECCEEEeeeecCccCEEEECh
Confidence 4455678899999999999886 9999996
No 9
>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=9.51 E-value=1.4e+02 Score=23.05 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=23.1
Q ss_pred cEEEEEEeCCcEEEEEEEeechhhHHHHHhCC
Q 007605 156 MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGG 187 (596)
Q Consensus 156 Mlh~~~f~~G~a~y~~RfVrT~~~~~E~~aG~ 187 (596)
.+|-++|+||+++.-.-|+.|..+. +++.||
T Consensus 105 ~~~~~~~~dGkI~~~~~y~D~~~~~-~q~~g~ 135 (135)
T d3dm8a1 105 MALFTQFQNGRLTNLRMVLDTFDLV-EQALGR 135 (135)
T ss_dssp EEEEEEEETTEEEEEEEEECHHHHH-HHHHTC
T ss_pred EEEEEEEECCEEEEEEEEeCHHHHH-HHhhCC
Confidence 4577899999999888888887764 335554
No 10
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=8.53 E-value=6.7e+02 Score=22.85 Aligned_cols=67 Identities=4% Similarity=-0.028 Sum_probs=35.1
Q ss_pred CCCeEEEEEEccCCCCcceEEEEcCceeeeecccccccCCCeEEEEEEecCCCCCcccCCcccccccccCccEEEEEEeC
Q 007605 360 TIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNM 439 (596)
Q Consensus 360 ~~~sr~~VipR~~~d~~~v~wfe~p~~f~fH~~NA~Ee~~deIvvd~~~~~~~~~~~~~g~~~~~~~~~~~~L~r~rinl 439 (596)
+..+++.|++..++ ...-+..|+.......|+=.++ +++.+....+..|. .-|.+|+
T Consensus 356 ~~~~~l~v~~~~~~---~~~~~~~~~~~sv~~~~~~~~~-~~~~~~~ss~~tP~-------------------~~y~~Dl 412 (430)
T d1qfma1 356 DVKNTLQLHDLATG---ALLKIFPLEVGSVVGYSGQKKD-TEIFYQFTSFLSPG-------------------IIYHCDL 412 (430)
T ss_dssp TTEEEEEEEETTTC---CEEEEECCCSSEEEEEECCTTC-SEEEEEEECSSCCC-------------------EEEEEET
T ss_pred CCEeEEEEEECCCC---cEEEecCCCCceEeeccCCCCC-CEEEEEEcCCCCCC-------------------eEEEEEC
Confidence 44577778777653 2233334443333344442233 56665544333222 4577889
Q ss_pred CCCceeEEee
Q 007605 440 KTGLASQKKL 449 (596)
Q Consensus 440 ~tg~v~~~~L 449 (596)
+||+.+.+.+
T Consensus 413 ~t~~~~~~~~ 422 (430)
T d1qfma1 413 TKEELEPRVF 422 (430)
T ss_dssp TSSSCCCEEE
T ss_pred CCCCcceeeE
Confidence 9987654444
Done!