Query 007606
Match_columns 596
No_of_seqs 468 out of 3061
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 12:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 6.2E-81 1.3E-85 678.5 31.5 491 40-579 64-619 (727)
2 PLN03192 Voltage-dependent pot 100.0 1.9E-58 4E-63 533.0 40.0 406 40-491 48-487 (823)
3 KOG0499 Cyclic nucleotide-gate 100.0 1.6E-56 3.4E-61 458.1 27.3 398 40-491 214-642 (815)
4 KOG0500 Cyclic nucleotide-gate 100.0 9.6E-57 2.1E-61 454.5 25.0 389 58-492 4-425 (536)
5 KOG0501 K+-channel KCNQ [Inorg 100.0 1E-57 2.3E-62 465.0 12.1 412 40-502 204-668 (971)
6 PRK09392 ftrB transcriptional 99.7 8E-17 1.7E-21 159.7 19.5 192 366-586 6-211 (236)
7 PRK11753 DNA-binding transcrip 99.7 2E-15 4.4E-20 146.9 20.9 176 376-580 6-199 (211)
8 PRK11161 fumarate/nitrate redu 99.6 1E-14 2.2E-19 144.5 18.5 182 369-580 15-215 (235)
9 PRK10402 DNA-binding transcrip 99.6 1.7E-14 3.7E-19 142.1 16.8 178 379-586 20-208 (226)
10 PRK09391 fixK transcriptional 99.5 1.1E-13 2.4E-18 136.5 16.3 170 385-586 33-219 (230)
11 TIGR03697 NtcA_cyano global ni 99.5 1.3E-12 2.9E-17 125.1 16.0 164 398-588 1-182 (193)
12 COG0664 Crp cAMP-binding prote 99.4 7.4E-12 1.6E-16 121.3 18.3 166 371-565 4-181 (214)
13 cd00038 CAP_ED effector domain 99.4 1.2E-11 2.7E-16 106.7 13.9 107 374-491 1-108 (115)
14 PF00027 cNMP_binding: Cyclic 99.3 8E-12 1.7E-16 103.8 10.6 90 392-491 1-90 (91)
15 PRK13918 CRP/FNR family transc 99.3 5.4E-11 1.2E-15 114.9 16.9 162 389-586 5-188 (202)
16 smart00100 cNMP Cyclic nucleot 99.3 7E-11 1.5E-15 102.5 13.9 109 374-491 1-110 (120)
17 KOG0614 cGMP-dependent protein 99.2 7.5E-12 1.6E-16 129.3 6.5 191 362-581 267-461 (732)
18 PLN02868 acyl-CoA thioesterase 99.1 5.2E-10 1.1E-14 120.0 14.9 113 366-491 7-119 (413)
19 KOG1113 cAMP-dependent protein 99.1 1.5E-10 3.2E-15 115.1 7.4 110 366-490 121-230 (368)
20 COG2905 Predicted signal-trans 99.1 1.7E-09 3.6E-14 113.8 15.4 112 366-491 6-117 (610)
21 KOG0614 cGMP-dependent protein 99.1 1.2E-10 2.7E-15 120.4 5.2 116 360-490 147-262 (732)
22 KOG3713 Voltage-gated K+ chann 99.0 1.1E-10 2.5E-15 121.1 3.4 60 240-299 375-434 (477)
23 PF07885 Ion_trans_2: Ion chan 99.0 1.6E-09 3.4E-14 88.0 7.6 56 241-296 23-78 (79)
24 KOG1113 cAMP-dependent protein 98.8 1.5E-08 3.2E-13 101.0 7.1 116 361-490 234-349 (368)
25 PF08412 Ion_trans_N: Ion tran 98.2 7.7E-07 1.7E-11 70.4 2.9 64 5-75 2-71 (77)
26 KOG1419 Voltage-gated K+ chann 98.2 2E-06 4.3E-11 90.3 6.5 92 236-334 263-354 (654)
27 PRK10537 voltage-gated potassi 98.1 6.7E-06 1.4E-10 87.0 7.4 55 241-295 167-221 (393)
28 KOG4390 Voltage-gated A-type K 98.1 7.6E-07 1.7E-11 89.2 0.3 62 236-297 350-415 (632)
29 KOG1545 Voltage-gated shaker-l 98.0 9.4E-07 2E-11 88.0 -0.1 50 240-289 391-440 (507)
30 PF00520 Ion_trans: Ion transp 98.0 3.3E-06 7.1E-11 80.5 3.6 56 236-291 139-200 (200)
31 KOG2968 Predicted esterase of 97.7 3.8E-05 8.1E-10 85.0 5.6 99 382-491 500-599 (1158)
32 PF04831 Popeye: Popeye protei 97.6 0.0048 1E-07 55.1 15.5 104 377-490 14-119 (153)
33 KOG1418 Tandem pore domain K+ 97.5 0.00013 2.9E-09 78.5 5.2 60 242-301 115-174 (433)
34 KOG3684 Ca2+-activated K+ chan 97.3 0.0009 2E-08 69.5 9.1 90 239-336 284-373 (489)
35 KOG1420 Ca2+-activated K+ chan 97.2 0.00018 3.9E-09 75.9 2.8 139 239-385 285-428 (1103)
36 PRK11832 putative DNA-binding 97.2 0.014 3.1E-07 55.6 15.2 169 383-586 15-192 (207)
37 PF01007 IRK: Inward rectifier 97.0 0.0014 3E-08 67.8 7.2 59 241-299 83-143 (336)
38 KOG2968 Predicted esterase of 97.0 0.0063 1.4E-07 68.0 12.0 102 386-491 111-213 (1158)
39 KOG4404 Tandem pore domain K+ 96.0 0.0065 1.4E-07 60.6 4.0 60 242-301 186-253 (350)
40 KOG4404 Tandem pore domain K+ 95.8 0.0018 3.9E-08 64.5 -0.8 54 238-291 76-129 (350)
41 KOG3542 cAMP-regulated guanine 95.5 0.033 7.1E-07 60.4 7.0 113 363-490 277-391 (1283)
42 KOG1418 Tandem pore domain K+ 94.7 0.0086 1.9E-07 64.4 -0.0 48 241-288 241-296 (433)
43 KOG3542 cAMP-regulated guanine 91.8 0.24 5.3E-06 54.0 5.2 105 353-480 23-127 (1283)
44 KOG3827 Inward rectifier K+ ch 89.5 0.64 1.4E-05 48.0 5.6 56 242-297 112-169 (400)
45 COG4709 Predicted membrane pro 84.8 7.1 0.00015 36.4 9.0 72 307-380 5-80 (195)
46 KOG3193 K+ channel subunit [In 78.8 0.61 1.3E-05 49.8 -0.2 31 243-273 218-248 (1087)
47 PF08006 DUF1700: Protein of u 77.5 16 0.00035 34.3 9.2 56 307-364 5-64 (181)
48 PRK13290 ectC L-ectoine syntha 70.2 31 0.00068 30.3 8.5 69 391-478 38-106 (125)
49 PF07883 Cupin_2: Cupin domain 68.0 9.6 0.00021 29.1 4.4 45 393-444 3-48 (71)
50 PF13314 DUF4083: Domain of un 63.6 42 0.0009 25.0 6.4 46 269-317 5-56 (58)
51 PF00060 Lig_chan: Ligand-gate 61.0 12 0.00025 33.4 4.2 76 238-319 40-115 (148)
52 TIGR03037 anthran_nbaC 3-hydro 50.5 66 0.0014 29.5 7.1 59 408-483 48-106 (159)
53 KOG2302 T-type voltage-gated C 49.1 74 0.0016 37.4 8.5 261 13-311 1060-1413(1956)
54 PF05899 Cupin_3: Protein of u 48.8 26 0.00056 27.6 3.8 41 396-444 15-55 (74)
55 KOG3676 Ca2+-permeable cation 44.0 83 0.0018 36.1 8.0 75 255-330 601-682 (782)
56 smart00511 ORANGE Orange domai 43.2 92 0.002 21.7 5.5 36 303-338 5-41 (45)
57 PF02037 SAP: SAP domain; Int 42.6 56 0.0012 21.6 4.0 26 308-333 5-35 (35)
58 PF10011 DUF2254: Predicted me 40.8 1.2E+02 0.0027 32.0 8.5 62 238-299 96-157 (371)
59 PF14377 DUF4414: Domain of un 40.8 40 0.00086 28.8 3.9 45 320-364 52-106 (108)
60 PF07527 Hairy_orange: Hairy O 40.8 1.1E+02 0.0023 21.2 5.5 36 302-337 4-40 (43)
61 PRK13264 3-hydroxyanthranilate 38.9 77 0.0017 29.7 5.7 62 406-484 52-113 (177)
62 PHA01757 hypothetical protein 35.6 1.8E+02 0.0039 23.1 6.3 48 265-313 3-50 (98)
63 COG1917 Uncharacterized conser 34.9 97 0.0021 27.0 5.7 51 390-447 45-96 (131)
64 PF12973 Cupin_7: ChrR Cupin-l 33.4 1.7E+02 0.0037 23.7 6.5 64 389-477 25-88 (91)
65 COG0662 {ManC} Mannose-6-phosp 32.9 1E+02 0.0022 27.0 5.4 48 389-443 37-85 (127)
66 PF07697 7TMR-HDED: 7TM-HD ext 32.5 1.9E+02 0.0042 27.5 7.9 32 378-409 174-207 (222)
67 PF13545 HTH_Crp_2: Crp-like h 28.9 22 0.00048 27.7 0.4 29 564-592 2-31 (76)
68 PF13174 TPR_6: Tetratricopept 27.9 1.2E+02 0.0026 18.6 3.8 19 533-551 14-32 (33)
69 PRK11677 hypothetical protein; 26.5 4.7E+02 0.01 23.3 8.6 56 285-355 13-69 (134)
70 smart00835 Cupin_1 Cupin. This 26.3 2E+02 0.0043 25.7 6.3 54 390-445 32-87 (146)
71 KOG3300 NADH:ubiquinone oxidor 26.2 3.1E+02 0.0068 24.1 6.9 45 308-353 61-105 (146)
72 PF01484 Col_cuticle_N: Nemato 24.1 2.7E+02 0.0059 19.8 6.1 40 272-311 9-48 (53)
73 PF06295 DUF1043: Protein of u 23.4 4.7E+02 0.01 22.9 7.9 45 287-337 11-56 (128)
74 PRK09108 type III secretion sy 22.0 2.7E+02 0.0058 29.3 7.0 68 264-331 174-241 (353)
75 PF09269 DUF1967: Domain of un 21.6 48 0.001 25.8 1.1 20 568-587 44-63 (69)
76 PRK11161 fumarate/nitrate redu 21.6 40 0.00086 32.8 0.8 34 558-591 153-186 (235)
77 PF13525 YfiO: Outer membrane 20.6 2.5E+02 0.0055 26.6 6.2 68 479-554 109-176 (203)
78 PHA03029 hypothetical protein; 20.4 4.3E+02 0.0093 20.7 6.1 39 266-304 2-40 (92)
79 COG3747 Phage terminase, small 20.2 1.8E+02 0.0038 26.3 4.4 77 509-585 50-137 (160)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-81 Score=678.46 Aligned_cols=491 Identities=36% Similarity=0.643 Sum_probs=428.6
Q ss_pred cCCCceecCCCch---hHHHHHHHHHHHhhhcceeeeEEEEcCCccceeccccchhhHHHHHhhhhheeee-----ee--
Q 007606 40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 109 (596)
Q Consensus 40 ~~~~~vi~P~s~~---Wd~~~~~~~~~~~~~~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~-----f~-- 109 (596)
...++++||.|+| ||++++++++|+++++|++++|+..+....| ++......++++|.++|++|++ |+
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 3446699999999 9999999999999999999999999888888 7888889999999999999999 54
Q ss_pred ----CCc-ccccchhhhhhhhhhhh-hHHHHhhcCChhhhhHhhh----------------hccccccCcch--------
Q 007606 110 ----SST-PHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSII----------------IITSKGSGFFP-------- 159 (596)
Q Consensus 110 ----~~~-~v~d~~~Ia~~~~Ylk~-F~~Dlls~lP~~~l~~~~~----------------~~~lr~~r~l~-------- 159 (596)
++. +|.||++||+ ||+++ |++|++|++|+++++.+.. +...++.|+.|
T Consensus 142 yv~~~s~elV~dpk~IA~--rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~ 219 (727)
T KOG0498|consen 142 YVDPSSYELVDDPKKIAK--RYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARL 219 (727)
T ss_pred EECCCCceeeeCHHHHHH--HHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 8999999999 99999 9999999999999987532 11122333333
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccCcccc
Q 007606 160 -------------------------AMVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMI 214 (596)
Q Consensus 160 -------------------------~h~~~~~~~l~~i~r~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~Wi~~~c~~~~ 214 (596)
+||+||+||++++.+...||+. .+|+...|....
T Consensus 220 ~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~---------------------~tw~~~l~~~~~ 278 (727)
T KOG0498|consen 220 EKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRK---------------------ATWLGSLGRLLS 278 (727)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc---------------------cccccccccccc
Confidence 9999999999999998888653 267765432112
Q ss_pred cCCCccccchhHHHHhhccccchhhHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007606 215 QDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIY 294 (596)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i 294 (596)
+.+..+.||+| +++.+|++|+||+++||||+||||++|+|..|++|+|++|++|.++||++||||+++
T Consensus 279 ~~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~ 346 (727)
T KOG0498|consen 279 CYNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTAL 346 (727)
T ss_pred cCcccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHh
Confidence 34444667754 466799999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcchhhhHHHHHHHHHHHHhhcCcc
Q 007606 295 LQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPM 374 (596)
Q Consensus 295 ~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~ 374 (596)
+++.+.+.++|+.++.++++||+++++|++||+||++|++|+|..++|+||+++|++||..||.+|+++++.++++++|+
T Consensus 347 iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpL 426 (727)
T KOG0498|consen 347 LQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPL 426 (727)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCC
Q 007606 375 FQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDP 454 (596)
Q Consensus 375 F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~ 454 (596)
|+++|++.+.+|+.++++..++|||+|++|||+.++||||.+|.+++...++|++ .+...+++||+|||.-+.|+.+.
T Consensus 427 F~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~Gd~~GeEl~~~~~~~ 504 (727)
T KOG0498|consen 427 FAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPGDFFGEELLTWCLDL 504 (727)
T ss_pred hhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCCCccchHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887754 34799999999996666677642
Q ss_pred CCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 007606 455 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGS 534 (596)
Q Consensus 455 ~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~ 534 (596)
|++.+|+|+|.|+++.|++++|..++++| ++++.+.+++++++|+++|++|+.+.+|.+|.++.+|.....
T Consensus 505 -------p~t~TVralt~~el~~L~~~dL~~V~~~f--~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~ 575 (727)
T KOG0498|consen 505 -------PQTRTVRALTYCELFRLSADDLKEVLQQF--RRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEE 575 (727)
T ss_pred -------CCCceeehhhhhhHHhccHHHHHHHHHHh--HHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccch
Confidence 34889999999999999999999999999 899999999999999999999999999999999998876554
Q ss_pred HHHHHhhhhhhhhhcCCCCCchhhHHHHhHHHHHHHHHhhhcCCC
Q 007606 535 LYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGL 579 (596)
Q Consensus 535 ~~~a~erY~~~~~~~p~~~~r~~~~~iAs~~~~~~~~~~~~~~~~ 579 (596)
.... +.....-.+.++..+.+.....|+++|.+..+.+..+..+
T Consensus 576 l~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 619 (727)
T KOG0498|consen 576 LALE-EEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASR 619 (727)
T ss_pred hhhh-cchhhhccccccchhhhhcccccccccccCCCcccccccc
Confidence 3332 2222222256677788899999999999998877766444
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.9e-58 Score=532.99 Aligned_cols=406 Identities=16% Similarity=0.214 Sum_probs=323.1
Q ss_pred cCCCceecCCCch---hHHHHHHHHHHHhhhcceeeeEEEEcCCccceeccccchhhHHHHHhhhhheeee-----ee--
Q 007606 40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 109 (596)
Q Consensus 40 ~~~~~vi~P~s~~---Wd~~~~~~~~~~~~~~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~-----f~-- 109 (596)
+..+++|+|.+++ ||.+++++++|+++++|+.++|... .....+.++|.++|++|++ |.
T Consensus 48 ~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~-----------~~~~~~~~~d~i~~~~F~iDi~l~f~~a 116 (823)
T PLN03192 48 GSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA-----------SPKRGLEIADNVVDLFFAVDIVLTFFVA 116 (823)
T ss_pred ccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC-----------CCCCCeeeHHHHHHHHHHHHHHhheeEE
Confidence 4668899999988 9999999999999999999888321 1112355667777777666 22
Q ss_pred -----CCcccccchhhhhhhhhhhh-hHHHHhhcCChhhhhHhhhh--------ccccccCcchHHHHHHHHHHHH-HHH
Q 007606 110 -----SSTPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIII--------ITSKGSGFFPAMVFGALWYFMA-IER 174 (596)
Q Consensus 110 -----~~~~v~d~~~Ia~~~~Ylk~-F~~Dlls~lP~~~l~~~~~~--------~~lr~~r~l~~h~~~~~~~l~~-i~r 174 (596)
++.+|.||++|++ ||+++ |++|++|++|++++...... ..++..|++|.+.+..++.-+. ..+
T Consensus 117 y~d~~~~~lV~d~~~I~~--~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~ 194 (823)
T PLN03192 117 YIDPRTQLLVRDRKKIAV--RYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIR 194 (823)
T ss_pred EEeCCCcEEEeCHHHHHH--HHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2457899999999 99999 99999999999887543210 1112222222111111100000 000
Q ss_pred H----HHHHHH-----hhccccccccccccccccccccccccccCcccccCCCccccchhHHHHhhccccchhhHHHHHH
Q 007606 175 E----TECWKK-----ACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIY 245 (596)
Q Consensus 175 ~----~~~~~~-----~~~~~~~c~~~~~~~~~~~~~~~Wi~~~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yi~ 245 (596)
. .+|.+. ...|+.+|.++++.......+.+|+...-. + ..+.+++.+|++
T Consensus 195 ~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~---------~------------~~~~s~~~~Yi~ 253 (823)
T PLN03192 195 FSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIP---------N------------FRETSLWIRYIS 253 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhh---------c------------cccCcHHHHHHH
Confidence 0 011111 123556666544432222344578742100 1 136789999999
Q ss_pred HHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCCHHH
Q 007606 246 CFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSL 325 (596)
Q Consensus 246 slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L 325 (596)
|+|||++|||||||||++|.|..|+++++++|++|+++|||++|++++++.+.+.+..+|+++++.+++||+++++|++|
T Consensus 254 slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~l 333 (823)
T PLN03192 254 AIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRL 333 (823)
T ss_pred HHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccC
Q 007606 326 QQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEG 405 (596)
Q Consensus 326 ~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~G 405 (596)
|+||++|+++.|+. .+.++++++++||++||.++..+++.+.++++++|++++++++..++..++++.|+|||.|+.+|
T Consensus 334 q~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qg 412 (823)
T PLN03192 334 KDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQN 412 (823)
T ss_pred HHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECC
Confidence 99999999999974 56788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHH
Q 007606 406 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRA 485 (596)
Q Consensus 406 e~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~ 485 (596)
|.++++|||.+|.|+++..+++++.+ +..+++|++|||.+++. ..|++++++|.++|+++.|++++|.+
T Consensus 413 e~~~~lY~I~~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~l~---------~~p~~~t~ra~~~s~ll~l~~~~f~~ 481 (823)
T PLN03192 413 EAPDDVYIVVSGEVEIIDSEGEKERV--VGTLGCGDIFGEVGALC---------CRPQSFTFRTKTLSQLLRLKTSTLIE 481 (823)
T ss_pred CCCceEEEEEecEEEEEEecCCccee--eEEccCCCEecchHHhc---------CCCCCCeEEEcccEEEEEEEHHHHHH
Confidence 99999999999999998766665543 68899999999998762 22568899999999999999999999
Q ss_pred HHHHcc
Q 007606 486 IVYQYW 491 (596)
Q Consensus 486 Ll~~~P 491 (596)
+++++|
T Consensus 482 ll~~~p 487 (823)
T PLN03192 482 AMQTRQ 487 (823)
T ss_pred HHHHhh
Confidence 999995
No 3
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-56 Score=458.06 Aligned_cols=398 Identities=19% Similarity=0.299 Sum_probs=348.0
Q ss_pred cCCCceecCCC-ch---hHHHHHHHHHHHhhhcceeeeEEEEcCCccceeccccchhhHHHHHhhhhheeee----e---
Q 007606 40 NHINRIVDPRG-PF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII----Y--- 108 (596)
Q Consensus 40 ~~~~~vi~P~s-~~---Wd~~~~~~~~~~~~~~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~----f--- 108 (596)
...+..|||.+ ++ |-.++.++..|++|++|++..||++.+.+ ...|++.|+++|++|++ |
T Consensus 214 ~~~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~R 284 (815)
T KOG0499|consen 214 IKLPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPR 284 (815)
T ss_pred cCCCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhh
Confidence 34567899999 55 99999999999999999999999985443 34799999999999998 2
Q ss_pred ----eCCcccccchhhhhhhhhhhh--hHHHHhhcCChhhhhHhh-hhccccccCcchHHHHHHHHHHHH----------
Q 007606 109 ----SSSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSI-IIITSKGSGFFPAMVFGALWYFMA---------- 171 (596)
Q Consensus 109 ----~~~~~v~d~~~Ia~~~~Ylk~--F~~Dlls~lP~~~l~~~~-~~~~lr~~r~l~~h~~~~~~~l~~---------- 171 (596)
+.|..|.|.+..++ ||+++ |-+|++|++|++++|+++ ..|.+|.+|.++ ...+|-++.
T Consensus 285 l~fvrgG~~ik~kndtrk--~Yl~sr~FklDllsiLPldllY~~~G~~p~wR~~R~lK---~~sF~e~~~~Le~i~s~~y 359 (815)
T KOG0499|consen 285 LQFVRGGDIIKDKNDTRK--HYLTSRKFKLDLLSILPLDLLYLFFGFNPMWRANRMLK---YTSFFEFNHHLESIMSKAY 359 (815)
T ss_pred heeeeCceEEEechHHHH--HHHHhhhhhhhHHhhhhHHHHHHHhccchhhhhhhHHH---HHHHHHHHHHHHHHhcchh
Confidence 37889999999999 99999 999999999999999866 457889999888 233444433
Q ss_pred ---HHHHHHHHHHhhccccccccccccccccccccccccccCcccccCCCccccchhHHHHhhccccchhhHHHHHHHHH
Q 007606 172 ---IERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFR 248 (596)
Q Consensus 172 ---i~r~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~Wi~~~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yi~slY 248 (596)
+.|-.. ......|.++|.+.+...-++.|.+.|+++ +-+..|++|+|
T Consensus 360 ~~RV~rT~~-YmlyilHinacvYY~~SayqglG~~rWVyd-----------------------------g~Gn~YiRCyy 409 (815)
T KOG0499|consen 360 IYRVIRTTG-YLLYILHINACVYYWASAYQGLGTTRWVYD-----------------------------GEGNEYIRCYY 409 (815)
T ss_pred hhhhHHHHH-HHHHHHhhhHHHHHHHHhhcccccceeEEc-----------------------------CCCCceeeehh
Confidence 122111 122334677787644444447888999852 12346999999
Q ss_pred HHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 007606 249 WGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQR 328 (596)
Q Consensus 249 wa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~r 328 (596)
||+.|++|+| |.-.|.|..|++|..+.-+.|+++||.+||+|-.++.+.+.++.+|+++||+...||+..++|++.|+|
T Consensus 410 fa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnR 488 (815)
T KOG0499|consen 410 FAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNR 488 (815)
T ss_pred hHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999999 788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHhcchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCC
Q 007606 329 VRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPI 408 (596)
Q Consensus 329 v~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~ 408 (596)
|+.+|+|.|+.++..||.++++.||..|+.+++..++...+.++.+|++++.+.+..++.+++.+.|-|||++++.||++
T Consensus 489 Vr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiG 568 (815)
T KOG0499|consen 489 VRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIG 568 (815)
T ss_pred HHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHH
Q 007606 409 CEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVY 488 (596)
Q Consensus 409 ~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~ 488 (596)
.+||+|..|.|++....+|.. ++..+.+|..|||++++. .....+|+++|+|...|.+++++++|+.+++.
T Consensus 569 kEMYIIk~GqvQVlGGp~~~~---Vl~tL~~GsVFGEISLLa------igG~nRRTAnV~a~Gf~nLfvL~KkdLneil~ 639 (815)
T KOG0499|consen 569 KEMYIIKHGQVQVLGGPDGTK---VLVTLKAGSVFGEISLLA------IGGGNRRTANVVAHGFANLFVLDKKDLNEILV 639 (815)
T ss_pred ceeEEeecceEEEecCCCCCE---EEEEecccceeeeeeeee------ecCCCccchhhhhcccceeeEecHhHHHHHHH
Confidence 999999999999998777764 468999999999999872 22334789999999999999999999999999
Q ss_pred Hcc
Q 007606 489 QYW 491 (596)
Q Consensus 489 ~~P 491 (596)
.||
T Consensus 640 ~YP 642 (815)
T KOG0499|consen 640 HYP 642 (815)
T ss_pred hCc
Confidence 994
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-57 Score=454.46 Aligned_cols=389 Identities=19% Similarity=0.262 Sum_probs=326.6
Q ss_pred HHHHHHHhhhcceeeeEEEEcCCccceeccccchhhHHHHHhhhhheeee---ee-------CCcccccchhhhhhhhhh
Q 007606 58 LAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII---YS-------SSTPHKHSRANAKKCFYL 127 (596)
Q Consensus 58 ~~~~~~~~~~~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~---f~-------~~~~v~d~~~Ia~~~~Yl 127 (596)
.+.++|+.++++.++.|+- ++......|..+|+++|++|++ ++ +|..|.|-++.++ ||.
T Consensus 4 s~~vLYN~~~li~r~~F~d---------i~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~--hY~ 72 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDD---------IQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRK--HYV 72 (536)
T ss_pred EEehHHHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHH--HHH
Confidence 4567888888887766642 3556677899999999999999 22 7899999999999 999
Q ss_pred hh--hHHHHhhcCChhhhhHhhhh-ccccccCcch--------------------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 007606 128 NS--FLKDLLSCLPIPQLVTSIII-ITSKGSGFFP--------------------AMVFGALWYFMAIERETECWKKACR 184 (596)
Q Consensus 128 k~--F~~Dlls~lP~~~l~~~~~~-~~lr~~r~l~--------------------~h~~~~~~~l~~i~r~~~~~~~~~~ 184 (596)
++ |.+|++|.+|+|+++++... +..|.+|++| ..+..-+++++-+ .
T Consensus 73 ~s~~f~lD~l~liP~D~l~~~~~~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~il-----------f 141 (536)
T KOG0500|consen 73 HSTQFKLDVLSLIPLDLLLFKDGSASLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLIL-----------F 141 (536)
T ss_pred HhhhhhhhhhhhcchhHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH-----------H
Confidence 99 99999999999999876432 2334555554 1112222333323 3
Q ss_pred cccccccccccccccccccccccccCcccccCCCccccchhHHHHhhccccchhhHHHHHHHHHHHHHhhccCCcccccC
Q 007606 185 EHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTS 264 (596)
Q Consensus 185 ~~~~c~~~~~~~~~~~~~~~Wi~~~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yi~slYwa~~t~ttvGyGdi~p 264 (596)
||++|.+.++.-..+++.++|.+..- .+| .|+ .+ +..++..+|+.|+||+..||||+|. ..+|
T Consensus 142 HWNaClYf~iS~~~g~~~d~wvY~~i--~d~-----~~~---~c------~~~n~~ReY~~S~YWStLTlTTiGe-~P~P 204 (536)
T KOG0500|consen 142 HWNACLYFLISKAIGFTTDDWVYPKI--NDP-----EFA---TC------DAGNLTREYLYSLYWSTLTLTTIGE-QPPP 204 (536)
T ss_pred HHhhHHHHhhhHhcCccccccccCCc--cCc-----ccc---cc------chhHHHHHHHHHHHHHhhhhhhccC-CCCC
Confidence 56677755554444778888986310 011 111 00 1356999999999999999999995 4478
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCC
Q 007606 265 THEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGID 344 (596)
Q Consensus 265 ~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~ 344 (596)
.++.|++|.|+-.++|+++||.|+|++++++.++++...+|+++||.+++||+.|++|.+++.||.+||.|.|.+++..|
T Consensus 205 ~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~D 284 (536)
T KOG0500|consen 205 VTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVD 284 (536)
T ss_pred CcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEe
Q 007606 345 VENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT 424 (596)
Q Consensus 345 e~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~ 424 (596)
|+++++.||+.|+.+|+.+++.+.|+++++|+++.+.++.++...+++..|.|||+|+++||.+++||+|.+|.+++...
T Consensus 285 Eeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~d 364 (536)
T KOG0500|consen 285 EEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVAD 364 (536)
T ss_pred HHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccc
Q 007606 425 NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQ 492 (596)
Q Consensus 425 ~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~ 492 (596)
|++.. ...+++|++|||.++++.- +..++.+|+++++++..+++++++++|+.+++++||+
T Consensus 365 Dg~t~----~~~L~~G~~FGEisIlni~---g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~ 425 (536)
T KOG0500|consen 365 DGVTV----FVTLKAGSVFGEISILNIK---GNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPD 425 (536)
T ss_pred CCcEE----EEEecCCceeeeeEEEEEc---CcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCH
Confidence 66543 4789999999999987432 3346678999999999999999999999999999974
No 5
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-57 Score=465.00 Aligned_cols=412 Identities=17% Similarity=0.294 Sum_probs=346.7
Q ss_pred cCCCceecCCCch---hHHHHHHHHHHHhhhcceeeeEEEEcCCccceeccccchhhHHHHHhhhhheeee-----ee--
Q 007606 40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 109 (596)
Q Consensus 40 ~~~~~vi~P~s~~---Wd~~~~~~~~~~~~~~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~-----f~-- 109 (596)
+..+.+|-....| |||+++++.+|+++++|+.++|-.- ......|.++|.++|++|++ |+
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk----------~~~~vs~lvvDSiVDVIF~vDIvLNFHTT 273 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNK----------QRNNVSWLVVDSIVDVIFFVDIVLNFHTT 273 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccc----------ccCceeEEEecchhhhhhhhhhhhhccee
Confidence 5667788889999 9999999999999999998887311 12344688999999999998 55
Q ss_pred ----CCcccccchhhhhhhhhhhh-hHHHHhhcCChhhhhHhh--------hhccccccCcch-----------------
Q 007606 110 ----SSTPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSI--------IIITSKGSGFFP----------------- 159 (596)
Q Consensus 110 ----~~~~v~d~~~Ia~~~~Ylk~-F~~Dlls~lP~~~l~~~~--------~~~~lr~~r~l~----------------- 159 (596)
.|++|.||+.|+. +|+|+ |++|++||+|+|.+..+. .++.++..|+||
T Consensus 274 FVGPgGEVvsdPkvIRm--NYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA 351 (971)
T KOG0501|consen 274 FVGPGGEVVSDPKVIRM--NYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHYLEYGAA 351 (971)
T ss_pred eecCCCceecChhHHhH--HHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6899999999999 99999 999999999999988664 234555556555
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccCcccccCCCccccchhHH
Q 007606 160 ------------AMVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQE 227 (596)
Q Consensus 160 ------------~h~~~~~~~l~~i~r~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~Wi~~~c~~~~~~~~~~~~g~~~~ 227 (596)
+||++|+||.++=... ......+...++|+...... .+.+|+|..
T Consensus 352 ~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~~~n~i~~dsWL~kLa~~---~~tpY~~~~--- 408 (971)
T KOG0501|consen 352 VLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDEMDNTIQPDSWLWKLAND---IGTPYNYNL--- 408 (971)
T ss_pred HHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecccccccccchHHHHHHhh---cCCCceecc---
Confidence 8888888888761110 00011133457898654321 233444421
Q ss_pred HHhhc-cccchhhHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 007606 228 AIQSG-MVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIK 306 (596)
Q Consensus 228 ~~~~~-~~~~~~~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~ 306 (596)
...| ++..++-...|+.|+||.++.|||||+|+++|.|+.|++|++++|++|.++||.|+|+++.|++++.+....|.
T Consensus 409 -s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYH 487 (971)
T KOG0501|consen 409 -SNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYH 487 (971)
T ss_pred -CCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHH
Confidence 1112 34566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHH
Q 007606 307 SKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEM 386 (596)
Q Consensus 307 ~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l 386 (596)
+.++.+.+||+-.++|++|.+||.+|..-.|...+|+|.+++|+..|.++|.+|..+++.+.....|.|+-.++..++.+
T Consensus 488 eMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaL 567 (971)
T KOG0501|consen 488 EMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRAL 567 (971)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccE
Q 007606 387 CKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCA 466 (596)
Q Consensus 387 ~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~s 466 (596)
+-.++..+..|||.|++.||..+.++||++|.+++...|+ ++++++.||.||+..+- . .....+.++
T Consensus 568 Am~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILGKGDVFGD~FWK--~-----~t~~qs~AN 634 (971)
T KOG0501|consen 568 AMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILGKGDVFGDEFWK--E-----NTLGQSAAN 634 (971)
T ss_pred HHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEeecCccchhHHhh--h-----hhhhhhhhh
Confidence 9999999999999999999999999999999999987543 25999999999998752 1 122356889
Q ss_pred EEEeceEEEEEEcHHHHHHHHHHccchhhhhhccch
Q 007606 467 LISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLD 502 (596)
Q Consensus 467 i~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~ 502 (596)
++|+|.|.+..|.++.+.++++-| ..+++-.-++
T Consensus 635 VRALTYcDLH~IKrd~Ll~VLdFY--tAFanSFaRN 668 (971)
T KOG0501|consen 635 VRALTYCDLHMIKRDKLLKVLDFY--TAFANSFARN 668 (971)
T ss_pred hhhhhhhhhhHHhHHHHHHHHHHH--HHHHHHhhhc
Confidence 999999999999999999999999 5555444333
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.74 E-value=8e-17 Score=159.73 Aligned_cols=192 Identities=13% Similarity=0.133 Sum_probs=153.0
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
.+.++.+++|..+++++++.+....+.+.|++|+.|+++|+.++.+|+|.+|.++++..++|++. ++..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~--~i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRET--TLAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceE--EEEEeCCCchhhh
Confidence 45789999999999999999999999999999999999999999999999999999987666654 3689999999999
Q ss_pred hhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHH
Q 007606 446 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCR 525 (596)
Q Consensus 446 ~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~ 525 (596)
.+++ ...++.++++|.++|+++.+++++|.+++.++ |.+.......+...+..
T Consensus 84 ~~~~---------~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~------------------p~l~~~~~~~l~~~~~~ 136 (236)
T PRK09392 84 AAVV---------LDAPYLMSARTLTRSRVLMIPAELVREAMSED------------------PGFMRAVVFELAGCYRG 136 (236)
T ss_pred HHHh---------CCCCCceEEEEcCceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHH
Confidence 8764 22256889999999999999999999999999 45555545555566777
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhc-----CCCCCchhh--HHHHhHHHH------HHHHHhhhcCCCCCC-cccc
Q 007606 526 YKKRKLEGSLYAKENILQDQKAEA-----GGKPSKFGT--AIYATQFFT------YVRRSVKRNGGLPGG-RVNI 586 (596)
Q Consensus 526 ~~~r~~~~~~~~a~erY~~~~~~~-----p~~~~r~~~--~~iAs~~~~------~~~~~~~~~~~~~~~-~~~~ 586 (596)
..++.......++++|+.+++-+. +....++|+ ++||+.+.. .+++-+++.|..-++ .|.|
T Consensus 137 ~~~~~~~~~~~~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG~tretvsR~l~~L~~~gl~~~~~~i~I 211 (236)
T PRK09392 137 LVKSLKNQKLRSSAERLANYLLKQSLRQGGADVVTLPYEKRVLASYLGMTPENLSRAFAALASHGVHVDGSAVTI 211 (236)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHHHhCCChhHHHHHHHHHHhCCeEeeCCEEEE
Confidence 778888888899999998877532 233456774 679987642 334556666654332 3444
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.69 E-value=2e-15 Score=146.94 Aligned_cols=176 Identities=12% Similarity=0.130 Sum_probs=138.2
Q ss_pred cCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCC
Q 007606 376 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDP 454 (596)
Q Consensus 376 ~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~ 454 (596)
+++++++++.++..++.+.|+||++|+.+|++++.+|+|.+|.++++..+ +|++. .+..+++|++||+..++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~~~---- 79 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEM--ILSYLNQGDFIGELGLFE---- 79 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEEeehhhcc----
Confidence 47899999999999999999999999999999999999999999999764 45553 368999999999998641
Q ss_pred CCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccch-hHHHHHHHHHHHHHHHHHhhh
Q 007606 455 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWR-TSKACVIQAAWCRYKKRKLEG 533 (596)
Q Consensus 455 ~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~-~~~~~~~e~~~~~~~~r~~~~ 533 (596)
..+++.++++|.++|+++.+++++|.+++.++ |.+. .+.+.+.++. ....++....
T Consensus 80 ----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l-~~~~~~~~~~ 136 (211)
T PRK11753 80 ----EGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMALSAQMARRL-QNTSRKVGDL 136 (211)
T ss_pred ----CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 12246789999999999999999999999999 4553 4445555444 5566778888
Q ss_pred hHHHHHhhhhhhhh---hc------CC-CCCchhhHHHHhHHHH------HHHHHhhhcCCCC
Q 007606 534 SLYAKENILQDQKA---EA------GG-KPSKFGTAIYATQFFT------YVRRSVKRNGGLP 580 (596)
Q Consensus 534 ~~~~a~erY~~~~~---~~------p~-~~~r~~~~~iAs~~~~------~~~~~~~~~~~~~ 580 (596)
...++++|+.+++. +. |+ +..+++++.||+.+.. .+++-+++.|...
T Consensus 137 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~ 199 (211)
T PRK11753 137 AFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKMLEDQGLIS 199 (211)
T ss_pred HhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 89999999976542 22 22 3358999999998743 2345666666544
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.63 E-value=1e-14 Score=144.49 Aligned_cols=182 Identities=12% Similarity=0.077 Sum_probs=142.6
Q ss_pred hhcCccccCCcHHHHHHHHhhceE-EEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeech
Q 007606 369 LKKVPMFQMMGKSILSEMCKCLKP-VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEE 446 (596)
Q Consensus 369 l~~~~~F~~ls~~~l~~l~~~~~~-~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~ 446 (596)
+++.+.+.++++++++.+....+. +.|+||+.|+++||.++.+|+|.+|.|+++..+ +|++.+ +.+..+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455555667999999999988864 679999999999999999999999999999865 455543 6888999999986
Q ss_pred hhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHH
Q 007606 447 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRY 526 (596)
Q Consensus 447 ~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~ 526 (596)
.++ .. +...+++|+++|+++.|++++|++++.++ |++.......+.......
T Consensus 93 ~~~---~~-------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~------------------p~~~~~~~~~~~~~~~~~ 144 (235)
T PRK11161 93 AIG---SG-------QHPSFAQALETSMVCEIPFETLDDLSGKM------------------PKLRQQIMRLMSGEIKGD 144 (235)
T ss_pred ccc---CC-------CCcceEEEeccEEEEEEEHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHH
Confidence 542 11 23458999999999999999999999999 555555555555666677
Q ss_pred HHHHhhhhHHHHHhhhhhhhhhcCC-----------CCCchhhHHHHhHHH------HHHHHHhhhcCCCC
Q 007606 527 KKRKLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQFF------TYVRRSVKRNGGLP 580 (596)
Q Consensus 527 ~~r~~~~~~~~a~erY~~~~~~~p~-----------~~~r~~~~~iAs~~~------~~~~~~~~~~~~~~ 580 (596)
+++...+...++++|+.+++.+.++ +...+++++||+.+. ..+++-+++.|...
T Consensus 145 ~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~ 215 (235)
T PRK11161 145 QEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLA 215 (235)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 7788888889999999888876442 235689999998864 33456777777644
No 9
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.61 E-value=1.7e-14 Score=142.05 Aligned_cols=178 Identities=16% Similarity=0.119 Sum_probs=129.8
Q ss_pred cHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCCCC
Q 007606 379 GKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPL 457 (596)
Q Consensus 379 s~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~ 457 (596)
.+-+...+.+..+.+.|++|+.|+.+||+++.+|+|.+|.|+++..+ +|++.+ +.++.+|++||+.+++
T Consensus 20 ~~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~-------- 89 (226)
T PRK10402 20 KDCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI-------- 89 (226)
T ss_pred hhcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh--------
Confidence 33344467788899999999999999999999999999999999864 455543 6899999999998754
Q ss_pred CCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhhHHH
Q 007606 458 SNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYA 537 (596)
Q Consensus 458 ~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~ 537 (596)
++.++..+++|+++|+++.+++++|.+++.++| .-+..+.+.+.++ ..+...+.......+
T Consensus 90 -~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p-----------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 150 (226)
T PRK10402 90 -DKDHETKAVQAIEECWCLALPMKDCRPLLLNDA-----------------LFLRKLCKFLSHK-NYRNIVSLTQNQSFP 150 (226)
T ss_pred -cCCCCCccEEEeccEEEEEEEHHHHHHHHhcCH-----------------HHHHHHHHHHHHH-HHHHHHHHHHhccCh
Confidence 223568899999999999999999999999993 2222233333333 333444455555678
Q ss_pred HHhhhhhhhhhc--CCCCCchhhHHHHhHHHH------HHHHHhhhcCCCC--CCcccc
Q 007606 538 KENILQDQKAEA--GGKPSKFGTAIYATQFFT------YVRRSVKRNGGLP--GGRVNI 586 (596)
Q Consensus 538 a~erY~~~~~~~--p~~~~r~~~~~iAs~~~~------~~~~~~~~~~~~~--~~~~~~ 586 (596)
+++|+.+++-.. ++.. ..++..||+.+.. .+|.-+++.|... +++|.|
T Consensus 151 ~~~Rla~~L~~~~~~~~~-~~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~~~i~I 208 (226)
T PRK10402 151 LENRLAAFILLTQEGDLY-HEKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSKRGYLI 208 (226)
T ss_pred HHHHHHHHHHhcccCCcc-cchHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeCCEEEE
Confidence 999998877542 2222 3589999998863 4567777788433 444555
No 10
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.55 E-value=1.1e-13 Score=136.53 Aligned_cols=170 Identities=12% Similarity=0.080 Sum_probs=133.2
Q ss_pred HHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCc
Q 007606 385 EMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHS 463 (596)
Q Consensus 385 ~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s 463 (596)
.++...+.+.|+||+.|+.+||.++.+|+|.+|.|+++..+ +|++.+ +..+.+|++||+.. ..++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~------------~~~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES------------GSTH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC------------CCcC
Confidence 34556788999999999999999999999999999999864 455433 68899999999642 1135
Q ss_pred ccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 007606 464 NCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQ 543 (596)
Q Consensus 464 ~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~erY~ 543 (596)
..+++|+++|+++.+++++|++++.++ |.+.......+...+....+++..+...++++|+.
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~------------------p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla 160 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATD------------------VDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVA 160 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhC------------------hHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 789999999999999999999999999 66666655666666667778888888899999998
Q ss_pred hhhhhc-------CCCCCchhhHHHHhHHH------HHHHHHhhhcCCCC--C-Ccccc
Q 007606 544 DQKAEA-------GGKPSKFGTAIYATQFF------TYVRRSVKRNGGLP--G-GRVNI 586 (596)
Q Consensus 544 ~~~~~~-------p~~~~r~~~~~iAs~~~------~~~~~~~~~~~~~~--~-~~~~~ 586 (596)
+++.+. +.+...+++++||+.+. ..+++-+++.|... + ++|.|
T Consensus 161 ~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~~GlI~~~~~~~i~I 219 (230)
T PRK09391 161 AFLLEMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQDRGLIGLSGARQIEL 219 (230)
T ss_pred HHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCceEEE
Confidence 776553 23445788999999874 34567778888664 3 34665
No 11
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.47 E-value=1.3e-12 Score=125.10 Aligned_cols=164 Identities=10% Similarity=0.071 Sum_probs=112.0
Q ss_pred CceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEE
Q 007606 398 ECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAF 476 (596)
Q Consensus 398 ge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll 476 (596)
|+.|+++||+++.+|+|.+|.|+++..+ +|++. ++..+++|++||+.+++. . ...++..+++|.++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~--~l~~~~~g~~~G~~~~~~---~----~~~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEI--TVALLRENSVFGVLSLIT---G----HRSDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEe--eeEEccCCCEeeeeeecc---C----CCCccceEEEEecceEEE
Confidence 7899999999999999999999999864 45554 369999999999987641 1 111235789999999999
Q ss_pred EEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhh----hc---
Q 007606 477 AINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKA----EA--- 549 (596)
Q Consensus 477 ~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~erY~~~~~----~~--- 549 (596)
.+++++|++++.++ |.+.......+........++...+...++++|...++- .+
T Consensus 72 ~i~~~~~~~l~~~~------------------p~l~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~ 133 (193)
T TIGR03697 72 AVPIEQVEKAIEED------------------PDLSMLLLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVP 133 (193)
T ss_pred EeeHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999 333333333333444445556666667778887765542 11
Q ss_pred -C---CCCCchhhHHHHhHHHH------HHHHHhhhcCCCCCCcccccc
Q 007606 550 -G---GKPSKFGTAIYATQFFT------YVRRSVKRNGGLPGGRVNITL 588 (596)
Q Consensus 550 -p---~~~~r~~~~~iAs~~~~------~~~~~~~~~~~~~~~~~~~~~ 588 (596)
+ .+...+++..||+.+.. .+++-+++.|...-++=.|.+
T Consensus 134 ~~~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I 182 (193)
T TIGR03697 134 GQRGVTIDLRLSHQAIAEAIGSTRVTITRLLGDLRKKKLISIHKKKITV 182 (193)
T ss_pred CCCeEEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 1 13346777778776653 344455555555444444443
No 12
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.43 E-value=7.4e-12 Score=121.34 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=128.3
Q ss_pred cCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhh
Q 007606 371 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 449 (596)
Q Consensus 371 ~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll 449 (596)
..+.|..++++....+......+.+++|+.|+.+|++++.+|+|.+|.++++..+ +|++.+ +.++++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELALL 81 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHHh
Confidence 3455666777777888889999999999999999999999999999999999865 355543 6899999999999876
Q ss_pred ccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHH
Q 007606 450 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 529 (596)
Q Consensus 450 ~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r 529 (596)
. ..++.++++|+++|+++.+++++|.+++.+. |.........+.+.......+
T Consensus 82 ~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------p~l~~~l~~~~~~~l~~~~~~ 134 (214)
T COG0664 82 G---------GDPRSASAVALTDVEVLEIPRKDFLELLAES------------------PKLALALLRLLARRLRQALER 134 (214)
T ss_pred c---------CCCccceEEEcceEEEEEecHHHHHHHHhhC------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 1 1156889999999999999999999999885 444444444555555666666
Q ss_pred HhhhhHHHHHhhhhhhhhhcCC-----------CCCchhhHHHHhHH
Q 007606 530 KLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQF 565 (596)
Q Consensus 530 ~~~~~~~~a~erY~~~~~~~p~-----------~~~r~~~~~iAs~~ 565 (596)
.......++++|....+..-.. +...++++.||+..
T Consensus 135 ~~~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~~ 181 (214)
T COG0664 135 LSLLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLAEYL 181 (214)
T ss_pred HHHHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHHHHh
Confidence 6666778888888765544332 24678888888544
No 13
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.37 E-value=1.2e-11 Score=106.69 Aligned_cols=107 Identities=20% Similarity=0.407 Sum_probs=93.7
Q ss_pred cccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCC-CeeeeEEEEecCCCCeeechhhhccC
Q 007606 374 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWGEELATSAL 452 (596)
Q Consensus 374 ~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~l~~G~~fGe~~ll~~~ 452 (596)
+|..++++++..++..++.+.+++|+.|+.+|+.++.+|+|.+|.++++..++ |++. .+..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQ--IVGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEecCCccCcChHHHh---
Confidence 46789999999999999999999999999999999999999999999988654 3333 36889999999998864
Q ss_pred CCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 453 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 453 ~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
+..++..+++|.++|.++.|+.++|.++++++|
T Consensus 76 ------~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 108 (115)
T cd00038 76 ------GNGPRSATVRALTDSELLVLPRSDFRRLLQEYP 108 (115)
T ss_pred ------cCCCCCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence 122468899999999999999999999999993
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.34 E-value=8e-12 Score=103.77 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=77.8
Q ss_pred EEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEec
Q 007606 392 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 471 (596)
Q Consensus 392 ~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e 471 (596)
.+.|+||++|+++|+.++.+|||++|.++++..+.+.+.. .+..+.+|++||+..++.. .++..+++|.+
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~---------~~~~~~~~a~~ 70 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELLTG---------KPSPFTVIALT 70 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHHHT---------SBBSSEEEESS
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeecCC---------CccEEEEEEcc
Confidence 3689999999999999999999999999999876544332 3689999999999987632 15688999999
Q ss_pred eEEEEEEcHHHHHHHHHHcc
Q 007606 472 NVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 472 ~~~ll~i~~~~f~~Ll~~~P 491 (596)
+|+++.|++++|.++++++|
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSH
T ss_pred CEEEEEEeHHHHHHHHHhCc
Confidence 99999999999999999995
No 15
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.32 E-value=5.4e-11 Score=114.93 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=107.9
Q ss_pred hceEEEecCCceEEccCC--CCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCccc
Q 007606 389 CLKPVLYVQECCIVKEGD--PICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNC 465 (596)
Q Consensus 389 ~~~~~~~~kge~Ii~~Ge--~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~ 465 (596)
.++...|+||++|+.+|| .++.+|+|.+|.|+++..+ +|++.+ +..+.+|++||+..++ . .++..
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~---~-------~~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA---G-------AERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc---C-------CCCCc
Confidence 467889999999999999 7799999999999999865 455543 6889999999997542 1 14577
Q ss_pred EEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 007606 466 ALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQ 545 (596)
Q Consensus 466 si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~erY~~~ 545 (596)
+++|+++|+++.|++++| . |.+....++... .. +....++...+...++++|...+
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~--~~~~~~l~~~l~----~~------------~~~~~~~~~~l~~~~~~~Rla~~ 128 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------S--AEDNLVLTQHLV----RT------------LARAYESIYRLVGQRLKNRIAAA 128 (202)
T ss_pred eEEEcCceEEEEEEHHHc------C--hhhHHHHHHHHH----HH------------HHHHHHHHHHHHhCchHHHHHHH
Confidence 899999999999999887 2 211111111111 11 11122333334445555555443
Q ss_pred h-----------hhcCCCCCchhhHHHHhHHH------HHHHHHhhhcCCCCCC--cccc
Q 007606 546 K-----------AEAGGKPSKFGTAIYATQFF------TYVRRSVKRNGGLPGG--RVNI 586 (596)
Q Consensus 546 ~-----------~~~p~~~~r~~~~~iAs~~~------~~~~~~~~~~~~~~~~--~~~~ 586 (596)
+ ...|.+...+++.+||+.+. ..++.-+++.|...-+ +|.|
T Consensus 129 Ll~l~~~~~~~~~~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I 188 (202)
T PRK13918 129 LLELSDTPLATQEDSGETMIYATHDELAAAVGSVRETVTKVIGELSREGYIRSGYGKIQL 188 (202)
T ss_pred HHHHHHHhCCCCCCCCeEEecCCHHHHHHHhCccHHHHHHHHHHHHHCCCEEcCCCEEEE
Confidence 2 23456667899999998764 3345666677766533 3554
No 16
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.28 E-value=7e-11 Score=102.50 Aligned_cols=109 Identities=20% Similarity=0.344 Sum_probs=93.6
Q ss_pred cccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccC
Q 007606 374 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 452 (596)
Q Consensus 374 ~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~ 452 (596)
+|.+++++.++.++..++.+.+++|++|+++|++++.+|+|.+|.++++..+ +|++. .+..+.+|++||+..++.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~~~-- 76 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQ--ILGILGPGDFFGELALLT-- 76 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceE--EEEeecCCceechhhhcc--
Confidence 4678999999999999999999999999999999999999999999999864 33332 368999999999998641
Q ss_pred CCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 453 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 453 ~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
....++..+++|.++|+++.++.+++.+.+..+|
T Consensus 77 -----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 110 (120)
T smart00100 77 -----NSRRAASATAVALELATLLRIDFRDFLQLLQENP 110 (120)
T ss_pred -----CCCcccceEEEEEeeEEEEccCHHHHHHHHHHhH
Confidence 0122567899999999999999999999999983
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.25 E-value=7.5e-12 Score=129.31 Aligned_cols=191 Identities=18% Similarity=0.228 Sum_probs=138.4
Q ss_pred HHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCC
Q 007606 362 SELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGD 441 (596)
Q Consensus 362 ~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~ 441 (596)
.+.+.++|+.+|+|.+++++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+...+++.++...+..+..||
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd 346 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGD 346 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccc
Confidence 34467899999999999999999999999999999999999999999999999999999998766543334478999999
Q ss_pred eeechhhhccCCCCCCCCCCCcccEEEEece-EEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHH
Q 007606 442 FWGEELATSALDPDPLSNIPHSNCALISVTN-VEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQ 520 (596)
Q Consensus 442 ~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~-~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e 520 (596)
+|||-+++. ...|++++.|.++ ++++.|+++.|.+++... ..+..+...+..|--+..
T Consensus 347 ~FGE~al~~---------edvRtAniia~~~gv~cl~lDresF~~liG~l--~~l~ek~~~D~~r~A~~~---------- 405 (732)
T KOG0614|consen 347 YFGERALLG---------EDVRTANIIAQAPGVECLTLDRESFKKLIGDL--EELKEKDYGDEERRASVV---------- 405 (732)
T ss_pred hhhHHHhhc---------cCccchhhhccCCCceEEEecHHHHHHhcccH--HHhhhhhccchhhhhhhH----------
Confidence 999999762 2257889999987 999999999999999988 555544444443310000
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhhhh---hhhcCCCCCchhhHHHHhHHHHHHHHHhhhcCCCCC
Q 007606 521 AAWCRYKKRKLEGSLYAKENILQDQ---KAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGLPG 581 (596)
Q Consensus 521 ~~~~~~~~r~~~~~~~~a~erY~~~---~~~~p~~~~r~~~~~iAs~~~~~~~~~~~~~~~~~~ 581 (596)
+..++.-..|.-...++ -.--=.-+-||-+...+|.-++.+|.++++++.++-
T Consensus 406 --------~~~~~~~e~a~v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdt 461 (732)
T KOG0614|consen 406 --------IKEDFAEEFAQVKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDT 461 (732)
T ss_pred --------HHHHHHhhhcccchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccch
Confidence 00000000011111111 111113345777777888888888999998887653
No 18
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.15 E-value=5.2e-10 Score=120.01 Aligned_cols=113 Identities=18% Similarity=0.303 Sum_probs=98.6
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
.+.++++++|+++++++++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++..+++++. ++..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~--~l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESR--PEFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcE--EEEEeCCCCEeeh
Confidence 45688999999999999999999999999999999999999999999999999999987644343 3688999999997
Q ss_pred hhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 446 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 446 ~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
. + . ..++..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l----~------~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----S------GSVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----C------CCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 2 1 12468899999999999999999999887764
No 19
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=1.5e-10 Score=115.09 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=97.6
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
.+.+++.-+|.+++++.+.++...|.++.++.|+.|++||+.++.+|+|.+|.+.++..+ . .+..+.+|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~--~----~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG--T----YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC--e----EEeeeCCCCchhh
Confidence 456777789999999999999999999999999999999999999999999999999852 2 2588999999999
Q ss_pred hhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHc
Q 007606 446 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 446 ~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~ 490 (596)
.++++ .+|+.+|+.|.+++.+|.+++..|..++-..
T Consensus 195 lALmy---------n~PRaATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 195 LALMY---------NPPRAATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred hHhhh---------CCCcccceeeccccceEEEeeceeEEEeecc
Confidence 99862 3478999999999999999999998776555
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.10 E-value=1.7e-09 Score=113.79 Aligned_cols=112 Identities=15% Similarity=0.271 Sum_probs=99.0
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
.+++.++|.|..++++++.+|...+....|.|||.|+..|.+.+++|+|.+|.|.++..++. .+..+.+|+.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-----v~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-----VLDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-----eeeeeccCccccc
Confidence 56889999999999999999999999999999999999999999999999999999885443 2589999999999
Q ss_pred hhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 446 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 446 ~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
.+++.... ......|.+|+.+|.|+++.|.++++++|
T Consensus 81 ~~l~~~~~---------~~~~~~aeedsl~y~lp~s~F~ql~~~n~ 117 (610)
T COG2905 81 SSLFTELN---------KQRYMAAEEDSLCYLLPKSVFMQLMEENP 117 (610)
T ss_pred hhhcccCC---------CcceeEeeccceEEecCHHHHHHHHHhCc
Confidence 98863221 24477888899999999999999999993
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.06 E-value=1.2e-10 Score=120.44 Aligned_cols=116 Identities=21% Similarity=0.416 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCC
Q 007606 360 MKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLST 439 (596)
Q Consensus 360 i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~ 439 (596)
-..++..+.+..-.+++++++++++.+..+|.+..|.+|+.|++|||+++.+|.+.+|.+.+.. +|+ .+...++
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~----ll~~m~~ 220 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGK----LLGKMGA 220 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCe----eeeccCC
Confidence 3455667788888889999999999999999999999999999999999999999999999987 333 2689999
Q ss_pred CCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHc
Q 007606 440 GDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 440 G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~ 490 (596)
|..|||.+++++. +|+++|+|+++|.+|.|+++.|+.++...
T Consensus 221 gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 221 GTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred chhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999988544 57999999999999999999999999876
No 22
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.1e-10 Score=121.10 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007606 240 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 299 (596)
Q Consensus 240 ~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~ 299 (596)
+..--.|+|||+.|||||||||++|.|..-++++..+.+.|++..|+=|..|.+=+....
T Consensus 375 FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y 434 (477)
T KOG3713|consen 375 FTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYY 434 (477)
T ss_pred CccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHH
Confidence 444457899999999999999999999999999999999999999987765555444333
No 23
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.98 E-value=1.6e-09 Score=87.96 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007606 241 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQ 296 (596)
Q Consensus 241 ~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~ 296 (596)
..|..|+||++.|+||+||||+.|.+...++++++.+++|..+++..++.+++.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999999999999999999999999999998875
No 24
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=1.5e-08 Score=101.01 Aligned_cols=116 Identities=16% Similarity=0.261 Sum_probs=103.6
Q ss_pred HHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCC
Q 007606 361 KSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTG 440 (596)
Q Consensus 361 ~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G 440 (596)
+..++.+.|+.+|.+..+...+...++..+.++.|++|+.|+.+|+.++.+|+|.+|.|.+....+| +.+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~----v~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG----VEV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC----eEE-Eechh
Confidence 4567889999999999999999999999999999999999999999999999999999998875544 224 89999
Q ss_pred CeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHc
Q 007606 441 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 441 ~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~ 490 (596)
++|||.+++. ..|+.+++.|.++..+..++++.|+.|+.-.
T Consensus 309 dyfge~al~~---------~~pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 309 DYFGELALLK---------NLPRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred hhcchHHHHh---------hchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 9999999862 2267999999999999999999999999866
No 25
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.23 E-value=7.7e-07 Score=70.45 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=50.8
Q ss_pred cccccccccccChhhH---HHhhhhccccccccccccccCCCceecCCCch---hHHHHHHHHHHHhhhcceeeeEE
Q 007606 5 TFRPFRRGTNLDSGFL---QRGQRLASNGYNIMSTSLDNHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIF 75 (596)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~P~s~~---Wd~~~~~~~~~~~~~~P~~~~f~ 75 (596)
...-+.|+.|+.|..+ +++++++.++.+..+ .++|||.|+| ||.+++++++++++++|+.++|.
T Consensus 2 ~~~~~~p~~nk~sl~~f~S~~ai~~E~~R~~~~~-------~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 2 FSSLLQPGDNKFSLRVFGSKKAIEKEKERQRSSG-------PWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred cHHhhccccCHHHHHHHccHHHHHHHHHHHhcCC-------CeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 3455788999999888 444455555554333 7799999999 99999999999999999998883
No 26
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.21 E-value=2e-06 Score=90.26 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=75.9
Q ss_pred chhhHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 007606 236 EKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQW 315 (596)
Q Consensus 236 ~~~~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~ 315 (596)
.++-+.-|-.|+||++.|+|||||||.+|.|-.-++++.+..++|..+||.--|.+++=+.-+-++ +.+ =++|
T Consensus 263 ~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQe--q~R-----QKHf 335 (654)
T KOG1419|consen 263 TNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQE--QHR-----QKHF 335 (654)
T ss_pred ccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHH--HHH-----HHHH
Confidence 456778899999999999999999999999999999999999999999999887776655432222 112 2478
Q ss_pred HHhcCCCHHHHHHHHHHHH
Q 007606 316 RTFEMLSQSLQQRVRNHQQ 334 (596)
Q Consensus 316 m~~~~l~~~L~~rv~~y~~ 334 (596)
-++++.-..|.+-.-+||.
T Consensus 336 ~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 336 NRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 8888999999988888876
No 27
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.08 E-value=6.7e-06 Score=86.99 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007606 241 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYL 295 (596)
Q Consensus 241 ~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~ 295 (596)
..+..|+||++.|+||+||||+.|.+...++++++++++|..+|++.++.+...+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999998887644
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.08 E-value=7.6e-07 Score=89.23 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=52.7
Q ss_pred chhhHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 007606 236 EKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLL----VLGNLTIYLQS 297 (596)
Q Consensus 236 ~~~~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~----iig~i~~i~~~ 297 (596)
+.+.+..--.+||+.+.||||.||||.+|.|...++|..++.+.|+++.|. |+++++.|..+
T Consensus 350 ~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 350 SATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred cccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 344555556889999999999999999999999999999999999998887 55777777754
No 29
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.04 E-value=9.4e-07 Score=87.97 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 007606 240 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLG 289 (596)
Q Consensus 240 ~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig 289 (596)
+..--.|||||+.|||||||||..|.|.+-+++-.++.+.|++-.|.-+-
T Consensus 391 F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVP 440 (507)
T KOG1545|consen 391 FSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVP 440 (507)
T ss_pred CCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEeccccc
Confidence 33344689999999999999999999999999999999999988777543
No 30
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.03 E-value=3.3e-06 Score=80.46 Aligned_cols=56 Identities=27% Similarity=0.275 Sum_probs=48.0
Q ss_pred chhhHHHHHHHHHHHHHhhccCCcccccCC-----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 007606 236 EKAFKKKFIYCFRWGLQTVSCAGQNLQTST-----HEGENLLA-SFIIIASLLLLLLVLGNL 291 (596)
Q Consensus 236 ~~~~~~~Yi~slYwa~~t~ttvGyGdi~p~-----t~~E~~~~-i~~~l~G~~~fa~iig~i 291 (596)
..+..+.|..|+||++.++|+.|+||+.+. +..+.++. ++..+++.++++.++|.|
T Consensus 139 ~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 139 GYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp THHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 456778899999999999999999999886 88999999 666666678999988865
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.73 E-value=3.8e-05 Score=84.99 Aligned_cols=99 Identities=19% Similarity=0.240 Sum_probs=83.2
Q ss_pred HHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCCCCCCC
Q 007606 382 ILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNI 460 (596)
Q Consensus 382 ~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~ 460 (596)
.+..+-..+....+.+|+.++++||.++++|+|+.|.+|..... +++..+ +..++.||.+|+...++ .
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~lt---------~ 568 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEMLT---------K 568 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHhh---------c
Confidence 44555566778899999999999999999999999999977653 444333 58999999999998762 2
Q ss_pred CCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 461 PHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 461 ~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
.++..++.|+.|+++.+|+..-|..+..+||
T Consensus 569 ~~R~tTv~AvRdSelariPe~l~~~ik~ryP 599 (1158)
T KOG2968|consen 569 QPRATTVMAVRDSELARIPEGLLNFIKLRYP 599 (1158)
T ss_pred CCccceEEEEeehhhhhccHHHHHHHHHhcc
Confidence 2578899999999999999999999999995
No 32
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.57 E-value=0.0048 Score=55.13 Aligned_cols=104 Identities=14% Similarity=0.241 Sum_probs=81.4
Q ss_pred CCcHHHHHHHHhh-ceEEEecCCceEEccCC-CCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCC
Q 007606 377 MMGKSILSEMCKC-LKPVLYVQECCIVKEGD-PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDP 454 (596)
Q Consensus 377 ~ls~~~l~~l~~~-~~~~~~~kge~Ii~~Ge-~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~ 454 (596)
+.+....+.++.. .+...+.+|+.-.-||. +.+.+.++++|.+++... |+ .+..+.|.+|...-.+. ...+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~----fLH~I~p~qFlDSPEW~-s~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR----FLHYIYPYQFLDSPEWE-SLRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE----eeEeecccccccChhhh-cccc
Confidence 5788888999888 67788999999998884 567999999999999873 33 25777888877666543 1111
Q ss_pred CCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHc
Q 007606 455 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 455 ~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~ 490 (596)
.....-..|+.|.++|..+..+++.+..++...
T Consensus 87 ---s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~ 119 (153)
T PF04831_consen 87 ---SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKD 119 (153)
T ss_pred ---CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC
Confidence 122234789999999999999999999999999
No 33
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00013 Score=78.47 Aligned_cols=60 Identities=15% Similarity=0.335 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 301 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~ 301 (596)
-+..|+|++++++||+|||+++|.|...++++|+..++|.-++..++++++..+...-..
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999988654333
No 34
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0009 Score=69.54 Aligned_cols=90 Identities=10% Similarity=-0.011 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHh
Q 007606 239 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTF 318 (596)
Q Consensus 239 ~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 318 (596)
....|+.|+|....|..++||||++|.|.--+..+++.-++|+++-|.+++.++-=+.-. .--..+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeLt--------~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLELT--------KAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 667899999999999999999999999999999999999999999999998777554322 222346667766
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 007606 319 EMLSQSLQQRVRNHQQYV 336 (596)
Q Consensus 319 ~~l~~~L~~rv~~y~~~~ 336 (596)
.++.+++++-..+=++..
T Consensus 356 tqLTk~~KnAAA~VLqeT 373 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQET 373 (489)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666655444433333
No 35
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.23 E-value=0.00018 Score=75.88 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHh
Q 007606 239 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTF 318 (596)
Q Consensus 239 ~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 318 (596)
-...|..|.|+.+.||+||||||+-..|...+.|.+|.+++|..+||--+.++.+++.+...-.-+|+..- --++
T Consensus 285 hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-----gkkh 359 (1103)
T KOG1420|consen 285 HRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-----GKKH 359 (1103)
T ss_pred ccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-----CCee
Confidence 44679999999999999999999999999999999999999999999999999999987654433333210 0000
Q ss_pred cCCCHHH-HHHHHHHHH-HHHHHhcCCCH-HHHHhcchhhhHHHHHHHHHHHHhhcCccccC--CcHHHHHH
Q 007606 319 EMLSQSL-QQRVRNHQQ-YVWQEMRGIDV-ENLLNNLPVNLNWEMKSELCLEVLKKVPMFQM--MGKSILSE 385 (596)
Q Consensus 319 ~~l~~~L-~~rv~~y~~-~~~~~~~~~~e-~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~--ls~~~l~~ 385 (596)
.-+-.++ .+.|..|++ +.++....++. --.+...||+|--+- +++....++.+|++ +++.++..
T Consensus 360 ivvcghityesvshflkdflhedrddvdvevvflhr~~pdleleg---lfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 360 IVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEG---LFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred EEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHH---HHhhheeeEEEecccccChhhhhh
Confidence 0011111 122333333 22332233442 335677788775443 23445566667765 55555443
No 36
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.21 E-value=0.014 Score=55.63 Aligned_cols=169 Identities=12% Similarity=0.070 Sum_probs=103.7
Q ss_pred HHHHHhhceEEEecCCceE-EccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCC
Q 007606 383 LSEMCKCLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIP 461 (596)
Q Consensus 383 l~~l~~~~~~~~~~kge~I-i~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~ 461 (596)
.+.+....++..+++|..+ ..+.+..+..+++.+|.+.+.. .++ ..+....+..+||-...+ .+.
T Consensus 15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d~----ll~~t~~aP~IlGl~~~~---~~~------ 80 (207)
T PRK11832 15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EEN----VLIGITQAPYIMGLADGL---MKN------ 80 (207)
T ss_pred HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cCC----eEEEeccCCeEeeccccc---CCC------
Confidence 4455566678889999997 4444444679999999999953 333 235788888999976532 111
Q ss_pred CcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 007606 462 HSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENI 541 (596)
Q Consensus 462 ~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~er 541 (596)
...+.++|.++|+++.++.+++.+++++. +=|+.+.+.++... ..+..|-......++.+-
T Consensus 81 ~~~~~l~ae~~c~~~~i~~~~~~~iie~~------------------~LW~~~~~~l~~~~-~~l~~rd~~l~g~~sY~~ 141 (207)
T PRK11832 81 DIPYKLISEGNCTGYHLPAKQTITLIEQN------------------QLWRDAFYWLAWQN-RILELRDVQLIGHNSYEQ 141 (207)
T ss_pred CceEEEEEcCccEEEEeeHHHHHHHHHHh------------------chHHHHHHHHHHHH-HHHHHHHHHHhcCcHHHH
Confidence 22468999999999999999999999999 77777777665432 222222222222333332
Q ss_pred h----hhhhhhcCCCCCchhhHHH-Hh--HHHH-HHHHHhhhcCCCCCCcccc
Q 007606 542 L----QDQKAEAGGKPSKFGTAIY-AT--QFFT-YVRRSVKRNGGLPGGRVNI 586 (596)
Q Consensus 542 Y----~~~~~~~p~~~~r~~~~~i-As--~~~~-~~~~~~~~~~~~~~~~~~~ 586 (596)
= ..+.+.-|++-++++.... =. ++++ .+|+.+... |.||-|+|
T Consensus 142 IR~~L~eL~~~~e~~R~~I~v~~YIq~RT~LSRS~ImkILs~L--KkGgYIei 192 (207)
T PRK11832 142 IRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEVLAAL--RKGGYIEM 192 (207)
T ss_pred HHHHHHHHHhCCHHHHhhccHHHHHHHhccccHHHHHHHHHHH--hcCCCEEE
Confidence 2 2333334455556654433 21 2333 245555554 56665544
No 37
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.04 E-value=0.0014 Score=67.83 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhccCCccc--ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007606 241 KKFIYCFRWGLQTVSCAGQNL--QTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 299 (596)
Q Consensus 241 ~~Yi~slYwa~~t~ttvGyGd--i~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~ 299 (596)
..+..+|+||+.|+||+|||. ++|....-.++.++-+++|.++.|+++|-+-+=++.-.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 358899999999999999998 67777888888899999999999999998877665543
No 38
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.00 E-value=0.0063 Score=68.04 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=78.9
Q ss_pred HHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCC-CeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcc
Q 007606 386 MCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSN 464 (596)
Q Consensus 386 l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~ 464 (596)
++.+++...+..|+++++.|+..+.+|.+.+|.+.+...++ |++. .+....+|+.|....-+.+.- +........
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~--llk~V~~G~~~tSllSiLd~l--~~~ps~~~~ 186 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEY--LLKTVPPGGSFTSLLSILDSL--PGFPSLSRT 186 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCcee--eEeeccCCCchHhHHHHHHhc--cCCCcccce
Confidence 33777888899999999999999999999999999988764 4443 368899998776554221111 111113456
Q ss_pred cEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 465 CALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 465 ~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
..++|.++|.+..++.+.|.++...+|
T Consensus 187 i~akA~t~~tv~~~p~~sF~~~~~k~P 213 (1158)
T KOG2968|consen 187 IAAKAATDCTVARIPYTSFRESFHKNP 213 (1158)
T ss_pred eeeeeecCceEEEeccchhhhhhccCh
Confidence 789999999999999999999999996
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.0065 Score=60.62 Aligned_cols=60 Identities=10% Similarity=0.174 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhccCCcccccCC-------ChhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTST-------HEGENL-LASFIIIASLLLLLLVLGNLTIYLQSGTIK 301 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~-------t~~E~~-~~i~~~l~G~~~fa~iig~i~~i~~~~~~~ 301 (596)
.|+.|+|+-+.|+||+|+||.++. +..+++ ++.+.+++|..+++-.++-+.-.+..++..
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 399999999999999999998753 234444 555667788877777777666665555444
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.0018 Score=64.51 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 007606 238 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 291 (596)
Q Consensus 238 ~~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i 291 (596)
...-++..|||||.+.+||||||-.+|.|+.-++|+|+..++|+-+--..+..+
T Consensus 76 g~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~ 129 (350)
T KOG4404|consen 76 GPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSI 129 (350)
T ss_pred ccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHH
Confidence 344567789999999999999999999999999999999999975544444333
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.49 E-value=0.033 Score=60.42 Aligned_cols=113 Identities=20% Similarity=0.319 Sum_probs=87.3
Q ss_pred HHHHHHhhcCccccCCcHHHHHHHHhhceEEE-ecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCC
Q 007606 363 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVL-YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGD 441 (596)
Q Consensus 363 ~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~-~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~ 441 (596)
+...++..+.|-|.+++-....++|..|.... =..|.+++..|+.-+..+.|+.|+|++...+|.. ..+.-|+
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGn 350 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGN 350 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeeccc
Confidence 34467888899999999999999998886544 4679999999999999999999999999988765 4577899
Q ss_pred eeechhhhccCCCCCCCCCCCcccEE-EEeceEEEEEEcHHHHHHHHHHc
Q 007606 442 FWGEELATSALDPDPLSNIPHSNCAL-ISVTNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 442 ~fGe~~ll~~~~~~s~~~~~~s~~si-~A~e~~~ll~i~~~~f~~Ll~~~ 490 (596)
.||...-. +.. +. .--. .-+.||+..+|..+|+-.++...
T Consensus 351 SFG~~PT~---dkq-ym-----~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 351 SFGAEPTP---DKQ-YM-----IGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred ccCCCCCc---chh-hh-----hhhhheecccceEEEeehhhHHHHHHHH
Confidence 99976421 100 00 1112 34689999999999999998765
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=94.70 E-value=0.0086 Score=64.36 Aligned_cols=48 Identities=29% Similarity=0.299 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhccCCcccccCCChhhH--------HHHHHHHHHHHHHHHHHH
Q 007606 241 KKFIYCFRWGLQTVSCAGQNLQTSTHEGEN--------LLASFIIIASLLLLLLVL 288 (596)
Q Consensus 241 ~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~--------~~~i~~~l~G~~~fa~ii 288 (596)
--|+.|+||++.++||||+||++|.+...+ ....++.++|....+.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 458899999999999999999999998755 577788888887777776
No 43
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.82 E-value=0.24 Score=53.96 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=78.0
Q ss_pred hhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeE
Q 007606 353 PVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSV 432 (596)
Q Consensus 353 p~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~ 432 (596)
|+.++......--...|.+...|.++-...++.++...+...++.+.++++.|+++...|++++|.|-+..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--------- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--------- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence 44454444333333466777888889899999999999999999999999999999999999999987632
Q ss_pred EEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcH
Q 007606 433 FKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINT 480 (596)
Q Consensus 433 ~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~ 480 (596)
..+.|-..||--. +..+..++-.++++++.+++.
T Consensus 94 --qi~mp~~~fgkr~------------g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKRT------------GQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred --ceecCcccccccc------------ccccccceeeecccceeeeec
Confidence 2344555566543 113577888888999888843
No 44
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=89.50 E-value=0.64 Score=47.95 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhccCCcccc--cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQ--TSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 297 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi--~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~ 297 (596)
-...||-|++-|=||+|||-- +..-+.-.+..++-+++|+++-|+++|.+-+=++.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356789999999999999964 33445556667778899999999999987665544
No 45
>COG4709 Predicted membrane protein [Function unknown]
Probab=84.77 E-value=7.1 Score=36.43 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cCCCHHHHHhcc--hhhhHHHHHHHHHHHHhhcCccccCCcH
Q 007606 307 SKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEM--RGIDVENLLNNL--PVNLNWEMKSELCLEVLKKVPMFQMMGK 380 (596)
Q Consensus 307 ~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~--~~~~e~~ll~~L--p~~Lr~~i~~~~~~~~l~~~~~F~~ls~ 380 (596)
+=++++++|++ ++|++.++++..+|+-++.+. .|.+|+++..+| |.+.-.|+..+.-.+-.+.-|-..+.+.
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 44678888887 899999999999999777654 467799999998 6777777777664444444444444443
No 46
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=78.81 E-value=0.61 Score=49.80 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhccCCcccccCCChhhHHHH
Q 007606 243 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLA 273 (596)
Q Consensus 243 Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~ 273 (596)
-..|+||.+.|.+||||||..|.--.-.++.
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~ 248 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCV 248 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHH
Confidence 4578999999999999999998544443333
No 47
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=77.55 E-value=16 Score=34.28 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hcCCCHHHHHhcc--hhhhHHHHHHHH
Q 007606 307 SKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQE--MRGIDVENLLNNL--PVNLNWEMKSEL 364 (596)
Q Consensus 307 ~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~--~~~~~e~~ll~~L--p~~Lr~~i~~~~ 364 (596)
+=+++++++++ ++|++-++++.+||+-+.++ ..|.+|++++++| |.++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 44577888887 69999999999999988875 3567899999998 667767766554
No 48
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=70.18 E-value=31 Score=30.31 Aligned_cols=69 Identities=9% Similarity=0.049 Sum_probs=42.5
Q ss_pred eEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEe
Q 007606 391 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 470 (596)
Q Consensus 391 ~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~ 470 (596)
....++||...-..-....++++|++|.+.+...+++++ ..+.+||.+---+ ...-.+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~-----~~L~aGD~i~~~~--------------~~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV-----HPIRPGTMYALDK--------------HDRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE-----EEeCCCeEEEECC--------------CCcEEEEcC
Confidence 335678886543221122468999999999873332442 6799999875433 113345555
Q ss_pred ceEEEEEE
Q 007606 471 TNVEAFAI 478 (596)
Q Consensus 471 e~~~ll~i 478 (596)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 88887766
No 49
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=67.95 E-value=9.6 Score=29.10 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=32.2
Q ss_pred EEecCCceEEccCCCCC-eEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 393 VLYVQECCIVKEGDPIC-EMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 393 ~~~~kge~Ii~~Ge~~~-~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
..++||+..-..-.... .+++|++|.+.+.. ++.. ..+.+|+.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~~------~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DGER------VELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TTEE------EEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-ccEE------eEccCCEEEE
Confidence 46788887655555555 89999999999883 4332 5688888663
No 50
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=63.58 E-value=42 Score=24.99 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=25.6
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHH
Q 007606 269 ENLLAS---FIIIASLLLLLLVLGNLTIYLQSGTI---KLEEIKSKAREIEQWRT 317 (596)
Q Consensus 269 E~~~~i---~~~l~G~~~fa~iig~i~~i~~~~~~---~~~~~~~~~~~i~~~m~ 317 (596)
..++.+ .+.+++++.|+.+ +-.++++.+. ...+.++|+|++-+.+.
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl~---IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTLF---IRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 344555 3444444455544 3444444333 33468999999988764
No 51
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=61.05 E-value=12 Score=33.44 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 007606 238 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRT 317 (596)
Q Consensus 238 ~~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~ 317 (596)
........++++++.+++. +-++..|.+...+++.+++.+++.++.+..-|++++.+..... +..++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHH
Confidence 3455677789998888877 4467889999999999999999999999999999999876432 223445555555
Q ss_pred hc
Q 007606 318 FE 319 (596)
Q Consensus 318 ~~ 319 (596)
..
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 52
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=50.49 E-value=66 Score=29.53 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=40.7
Q ss_pred CCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHH
Q 007606 408 ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDL 483 (596)
Q Consensus 408 ~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f 483 (596)
.++++++++|.+.+-..++|+.. ...+.+|++|=--. . ...+-++.++|.++.|.+..-
T Consensus 48 tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flvP~--------g------vpHsP~r~~~t~~LvIE~~r~ 106 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLLPP--------H------VPHSPQRPAGSIGLVIERKRP 106 (159)
T ss_pred CceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEeCC--------C------CCcccccCCCcEEEEEEeCCC
Confidence 68999999999999877765422 26799999873221 1 123445568888888877643
No 53
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.14 E-value=74 Score=37.39 Aligned_cols=261 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred cccChhhHHHhhhhccccccccccccc--------------cCCCceecCCCch------------hHHHHHHHHHHHhh
Q 007606 13 TNLDSGFLQRGQRLASNGYNIMSTSLD--------------NHINRIVDPRGPF------------WNWIWLAVRIISTS 66 (596)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~vi~P~s~~------------Wd~~~~~~~~~~~~ 66 (596)
++..|.+--.+..+....+.+..+.-+ .|.+.+|.|+++| +|.+++++++.+++
T Consensus 1060 t~~~s~r~d~d~~~eEg~~~k~~r~r~~i~~~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcV 1139 (1956)
T KOG2302|consen 1060 TQDISTRHDEDEGKEEGQFQKCKRVRKQITRYKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCV 1139 (1956)
T ss_pred ccCCCCccccccchhcchhHHHHhhhhhhcccCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhH
Q ss_pred hcce-eeeEEEEcCCccceeccccchhhHHHHHhhhhheeee--------eeCCcccccchhhhhhhhhhhhhHHHHhhc
Q 007606 67 LDPL-FFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII--------YSSSTPHKHSRANAKKCFYLNSFLKDLLSC 137 (596)
Q Consensus 67 ~~P~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~--------f~~~~~v~d~~~Ia~~~~Ylk~F~~Dlls~ 137 (596)
++-+ +....-....+....++.......++.+..+.++-+- ++++=-+.|--..+- --+- +++-..+.
T Consensus 1140 tialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~v--sviD-ilvs~asa 1216 (1956)
T KOG2302|consen 1140 TIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAV--SVID-ILVSQASA 1216 (1956)
T ss_pred HHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHH--HHHH-HHHHHhhh
Q ss_pred CChhhhhHhhhhccccccCcch-------------------------HHHHHHHHHHHHHHHHHHHH-------------
Q 007606 138 LPIPQLVTSIIIITSKGSGFFP-------------------------AMVFGALWYFMAIERETECW------------- 179 (596)
Q Consensus 138 lP~~~l~~~~~~~~lr~~r~l~-------------------------~h~~~~~~~l~~i~r~~~~~------------- 179 (596)
.-.-.+-.+..++.+|..|.|| .-++..++.++++.-..-.=
T Consensus 1217 ~g~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrn 1296 (1956)
T KOG2302|consen 1217 GGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRN 1296 (1956)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceecccccccc
Q ss_pred ---HHhhcccccc----ccccccccc-------cccccccccccCcccccCCCccccchhHHHHhhccccchhhH-----
Q 007606 180 ---KKACREHTEC----YQNSFHCYE-------TVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFK----- 240 (596)
Q Consensus 180 ---~~~~~~~~~c----~~~~~~~~~-------~~~~~~Wi~~~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----- 240 (596)
+-.|..-+-= .+++...++ ....+.|.+ |+++.++.+-++..+..
T Consensus 1297 itnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~----------------ImyDgldavavdqqPI~nhnpw 1360 (1956)
T KOG2302|consen 1297 ITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVN----------------IMYDGLDAVAVDQQPILNHNPW 1360 (1956)
T ss_pred ccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhh----------------hhccchhhceeeeeccccCCcH
Q ss_pred -HHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 007606 241 -KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKARE 311 (596)
Q Consensus 241 -~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~ 311 (596)
..|+-|+|+.+..+. +-|++|++.-++-=+.=-+--......+++.-+++..
T Consensus 1361 mllYfIsfllIvsffV-------------------lnmfVgvvvenfhKcrqhqe~EeArRreEKrLrrlek 1413 (1956)
T KOG2302|consen 1361 MLLYFISFLLIVSFFV-------------------LNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEK 1413 (1956)
T ss_pred HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 54
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=48.84 E-value=26 Score=27.58 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=27.7
Q ss_pred cCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 396 VQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 396 ~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
.+|..-..-. .++..+|++|.+.+... +|.. ..+.+||.|-
T Consensus 15 ~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~~-----~~~~aGD~~~ 55 (74)
T PF05899_consen 15 TPGKFPWPYP--EDEFFYVLEGEVTITDE-DGET-----VTFKAGDAFF 55 (74)
T ss_dssp ECEEEEEEES--SEEEEEEEEEEEEEEET-TTEE-----EEEETTEEEE
T ss_pred CCceeEeeCC--CCEEEEEEEeEEEEEEC-CCCE-----EEEcCCcEEE
Confidence 4455433322 27888999999999875 4442 6789998774
No 55
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.97 E-value=83 Score=36.10 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=53.5
Q ss_pred ccCCcccccCCC------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHHHHhcCCCHHHHH
Q 007606 255 SCAGQNLQTSTH------EGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKL-EEIKSKAREIEQWRTFEMLSQSLQQ 327 (596)
Q Consensus 255 ttvGyGdi~p~t------~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~-~~~~~~~~~i~~~m~~~~l~~~L~~ 327 (596)
.|+|+||.+... ..-.+|.+++.++..+++-.+|+-|++........+ .+.+.+..+ .-.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~-~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAA-TILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHH-HHHHHHhcCCHHHHH
Confidence 679999976432 234566777777788888888888888888777766 555554433 345677899999988
Q ss_pred HHH
Q 007606 328 RVR 330 (596)
Q Consensus 328 rv~ 330 (596)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 843
No 56
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=43.24 E-value=92 Score=21.72 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Q 007606 303 EEIKSKAREIEQWRTFE-MLSQSLQQRVRNHQQYVWQ 338 (596)
Q Consensus 303 ~~~~~~~~~i~~~m~~~-~l~~~L~~rv~~y~~~~~~ 338 (596)
..|.+.+.++.+||... +++++++.++.+|+.-...
T Consensus 5 ~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~ 41 (45)
T smart00511 5 SGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLN 41 (45)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 58999999999999965 6799999999999986543
No 57
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=42.58 E-value=56 Score=21.56 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCC-----HHHHHHHHHHH
Q 007606 308 KAREIEQWRTFEMLS-----QSLQQRVRNHQ 333 (596)
Q Consensus 308 ~~~~i~~~m~~~~l~-----~~L~~rv~~y~ 333 (596)
++.++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 467889999999998 67888888874
No 58
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=40.83 E-value=1.2e+02 Score=32.03 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007606 238 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 299 (596)
Q Consensus 238 ~~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~ 299 (596)
...--|+.+|=|++..+.+++-++....-..-..+++++.+++.+.+-+.|.+++..++-.+
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 35566999999999999888877652222222777888888888899999988887775433
No 59
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=40.80 E-value=40 Score=28.78 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHh----------cCCCHHHHHhcchhhhHHHHHHHH
Q 007606 320 MLSQSLQQRVRNHQQYVWQEM----------RGIDVENLLNNLPVNLNWEMKSEL 364 (596)
Q Consensus 320 ~l~~~L~~rv~~y~~~~~~~~----------~~~~e~~ll~~Lp~~Lr~~i~~~~ 364 (596)
-+|++++..|...+.-.-... ...+.-.++..||+.||.+|...+
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~~ 106 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLDM 106 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhcc
Confidence 689999999999888654322 123457899999999999997653
No 60
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=40.77 E-value=1.1e+02 Score=21.20 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 007606 302 LEEIKSKAREIEQWRTFEM-LSQSLQQRVRNHQQYVW 337 (596)
Q Consensus 302 ~~~~~~~~~~i~~~m~~~~-l~~~L~~rv~~y~~~~~ 337 (596)
...|.+.+.++.+||.... +++.++.|+.+|+.-..
T Consensus 4 ~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~ 40 (43)
T PF07527_consen 4 RAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHh
Confidence 4679999999999986644 67899999999987543
No 61
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=38.86 E-value=77 Score=29.66 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=41.6
Q ss_pred CCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHH
Q 007606 406 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLR 484 (596)
Q Consensus 406 e~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~ 484 (596)
+..++++++++|.+.+...++|+.. ...+.+|++|=--. . -..+-++.++|..+.+.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fllP~--------g------vpHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLLPP--------H------VPHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEeCC--------C------CCcCCccCCCeEEEEEEeCCCC
Confidence 4568999999999999887766422 26799999873221 1 1223345688888888766433
No 62
>PHA01757 hypothetical protein
Probab=35.57 E-value=1.8e+02 Score=23.15 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=35.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 007606 265 THEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIE 313 (596)
Q Consensus 265 ~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~ 313 (596)
.+..|..+--|....|.+.-++++|.+..+...... .+.|...+|++.
T Consensus 3 i~l~e~al~gf~a~~g~l~~~fii~e~~hlynek~~-nenf~~AvD~m~ 50 (98)
T PHA01757 3 ITLLEGALYGFFAVTGALSASFIIGEIVHLYNEKQR-NENFAKAIDQMS 50 (98)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh-hHhHHHHHHHHH
Confidence 356788888899999999999999999888765433 355666555543
No 63
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.86 E-value=97 Score=27.04 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=38.4
Q ss_pred ceEEEecCCceEEccCCC-CCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechh
Q 007606 390 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEEL 447 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ 447 (596)
.....++||+.+-.---+ .....+|++|.+++... +.. ..+.+||++-.-.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~~-----~~l~~Gd~i~ip~ 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GEK-----KELKAGDVIIIPP 96 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CCc-----eEecCCCEEEECC
Confidence 345668888888776665 66889999999999875 332 5699999886543
No 64
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=33.39 E-value=1.7e+02 Score=23.74 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=42.0
Q ss_pred hceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEE
Q 007606 389 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 468 (596)
Q Consensus 389 ~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~ 468 (596)
......+.||..+-...-.+....||++|.+.. +++ .+.+|++.=.-. .+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeCC--------------CCccccC
Confidence 345667888888877666677788999999772 222 357887764332 2455777
Q ss_pred EeceEEEEE
Q 007606 469 SVTNVEAFA 477 (596)
Q Consensus 469 A~e~~~ll~ 477 (596)
+.++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888998875
No 65
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.90 E-value=1e+02 Score=26.97 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=33.6
Q ss_pred hceEEEecCCceE-EccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCee
Q 007606 389 CLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 443 (596)
Q Consensus 389 ~~~~~~~~kge~I-i~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 443 (596)
......+++|+-+ .+--...++.|+|++|...+... +++ ..+++|+.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~~-----~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GEE-----VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CEE-----EEecCCCEE
Confidence 3455667777774 44444478999999999999874 332 468888865
No 66
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=32.50 E-value=1.9e+02 Score=27.52 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhhceEEE--ecCCceEEccCCCCC
Q 007606 378 MGKSILSEMCKCLKPVL--YVQECCIVKEGDPIC 409 (596)
Q Consensus 378 ls~~~l~~l~~~~~~~~--~~kge~Ii~~Ge~~~ 409 (596)
.++...+...+...+.. +++||.|+++|+..+
T Consensus 174 ~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 174 ATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 45667777788888888 999999999999764
No 67
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=28.88 E-value=22 Score=27.69 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhcCCC-CCCcccccccccc
Q 007606 564 QFFTYVRRSVKRNGGL-PGGRVNITLAASE 592 (596)
Q Consensus 564 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 592 (596)
|+|..++.++++.|.+ ++++..|++|+|-
T Consensus 2 Rla~~Ll~l~~~~~~~~~~~~~~~~~~lt~ 31 (76)
T PF13545_consen 2 RLARFLLELAERFGRRQDGDGIRIPLPLTQ 31 (76)
T ss_dssp HHHHHHHHHHHHHEEEEETTEEEEEEESSH
T ss_pred hHHHHHHHHHHHHCCCCCCCCceEEecCCH
Confidence 8999999999999987 5777777777663
No 68
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=27.92 E-value=1.2e+02 Score=18.61 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=16.4
Q ss_pred hhHHHHHhhhhhhhhhcCC
Q 007606 533 GSLYAKENILQDQKAEAGG 551 (596)
Q Consensus 533 ~~~~~a~erY~~~~~~~p~ 551 (596)
.....|.+-|+.+++++|+
T Consensus 14 g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHHCcC
Confidence 4567899999999999997
No 69
>PRK11677 hypothetical protein; Provisional
Probab=26.47 E-value=4.7e+02 Score=23.34 Aligned_cols=56 Identities=9% Similarity=0.184 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcchhh
Q 007606 285 LLVLGNLTIYLQSGT-IKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVN 355 (596)
Q Consensus 285 a~iig~i~~i~~~~~-~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~ 355 (596)
|.+||.+..-+.+.. ....+.++.+++...-+. +-+++|-+||... .++++.|-.+
T Consensus 13 G~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele------~YkqeV~~HFa~T---------A~Ll~~L~~~ 69 (134)
T PRK11677 13 GIIIGAVAMRFGNRKLRQQQALQYELEKNKAELE------EYRQELVSHFARS---------AELLDTMAKD 69 (134)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 334444433333322 334455555655555554 3467777877733 3556555543
No 70
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=26.30 E-value=2e+02 Score=25.70 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=35.8
Q ss_pred ceEEEecCCceEEccCCC-CCeEEEEEeeeEEEEEeCC-CeeeeEEEEecCCCCeeec
Q 007606 390 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~-~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~l~~G~~fGe 445 (596)
+....+.+|...-..-.. ..++++|++|...+...+. +.+. ....+.+||.+-.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~--~~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKV--YDARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeE--EEEEecCCCEEEE
Confidence 445567888876544322 5689999999999887543 2221 1367999997744
No 71
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=26.23 E-value=3.1e+02 Score=24.14 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcch
Q 007606 308 KAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLP 353 (596)
Q Consensus 308 ~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp 353 (596)
+-++++.|-.++-+=+-|+..-.+++--.+.++.. .|.+++++.|
T Consensus 61 rr~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~e-eEaeiMKdVP 105 (146)
T KOG3300|consen 61 RRLKIEDYAARNAILPILQAERDRRFLSELRKNLE-EEAEIMKDVP 105 (146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH-HHHHHHccCC
Confidence 33456677777777777877766666666653222 3567777777
No 72
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=24.06 E-value=2.7e+02 Score=19.78 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 007606 272 LASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKARE 311 (596)
Q Consensus 272 ~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~ 311 (596)
++.+..+...+....+...+.++-.+...+..+++..-++
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555556666666666666665666555444
No 73
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.41 E-value=4.7e+02 Score=22.95 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 007606 287 VLGNLTIYLQSGT-IKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVW 337 (596)
Q Consensus 287 iig~i~~i~~~~~-~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~ 337 (596)
+||-+..-+...+ ....+.++.+++..+-+. +-++.|.+||...-
T Consensus 11 iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~------~yk~~V~~HF~~ta 56 (128)
T PF06295_consen 11 IIGFLIGRLTSSNQQKQAKLEQELEQAKQELE------QYKQEVNDHFAQTA 56 (128)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 4444433333333 333455666665555554 44677888887543
No 74
>PRK09108 type III secretion system protein HrcU; Validated
Probab=21.99 E-value=2.7e+02 Score=29.31 Aligned_cols=68 Identities=4% Similarity=0.014 Sum_probs=48.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007606 264 STHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRN 331 (596)
Q Consensus 264 p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~ 331 (596)
+......+...+..++..+..++++-.+..+.-+...-..+.+-.-+++++-+|+..=+++++.|+|+
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 174 PPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33445556666777777777777776666666555555566666677888888888888888888775
No 75
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=21.63 E-value=48 Score=25.78 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=13.9
Q ss_pred HHHHHhhhcCCCCCCccccc
Q 007606 568 YVRRSVKRNGGLPGGRVNIT 587 (596)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~ 587 (596)
-+.+.+++.|+++|+.|.|.
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig 63 (69)
T PF09269_consen 44 GVEKALRKAGAKEGDTVRIG 63 (69)
T ss_dssp THHHHHHTTT--TT-EEEET
T ss_pred CHHHHHHHcCCCCCCEEEEc
Confidence 35678899999999999884
No 76
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=21.55 E-value=40 Score=32.76 Aligned_cols=34 Identities=6% Similarity=-0.003 Sum_probs=25.7
Q ss_pred hHHHHhHHHHHHHHHhhhcCCCCCCccccccccc
Q 007606 558 TAIYATQFFTYVRRSVKRNGGLPGGRVNITLAAS 591 (596)
Q Consensus 558 ~~~iAs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (596)
.+-...|+|..++++.++.|....++..|++|+|
T Consensus 153 ~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt 186 (235)
T PRK11161 153 KKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMT 186 (235)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCceeEcccc
Confidence 3456889999999999998876655556666665
No 77
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=20.60 E-value=2.5e+02 Score=26.57 Aligned_cols=68 Identities=7% Similarity=0.001 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhcCCCCC
Q 007606 479 NTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEAGGKPS 554 (596)
Q Consensus 479 ~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~erY~~~~~~~p~~~~ 554 (596)
-...|+.+++.+|+.......-+ ....+...+.+..+.-..-.........|-.||..+++++|+-..
T Consensus 109 A~~~~~~li~~yP~S~y~~~A~~--------~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 109 AIEEFEELIKRYPNSEYAEEAKK--------RLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHHH-TTSTTHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHCcCchHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 35688999999984433221111 111222445555555444445555667899999999999998754
No 78
>PHA03029 hypothetical protein; Provisional
Probab=20.42 E-value=4.3e+02 Score=20.74 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=25.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 007606 266 HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEE 304 (596)
Q Consensus 266 t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~ 304 (596)
++.|.++-++..++=.++.--++|-+--.+.+.+..+..
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888777777776666666666666666555554443
No 79
>COG3747 Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=20.23 E-value=1.8e+02 Score=26.27 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=56.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhh---cCCC--------CCchhhHHHHhHHHHHHHHHhhhcC
Q 007606 509 QEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAE---AGGK--------PSKFGTAIYATQFFTYVRRSVKRNG 577 (596)
Q Consensus 509 ~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~erY~~~~~~---~p~~--------~~r~~~~~iAs~~~~~~~~~~~~~~ 577 (596)
.+|++....+.+...+.-.++-.-.+.=.+-+.|.++.++ +..+ ..|=|...+||---++++++++..|
T Consensus 50 ~~Wrrvvp~L~e~~ll~~~D~~~Le~YC~~ysiY~~av~~lkk~G~ii~~~~~g~~krNPav~~~sdA~~~l~klaSeLG 129 (160)
T COG3747 50 KEWRRVVPFLEELKLLKPADLTLLELYCVAYSIYRNAVAHLKKHGFIITNQFSGRVKRNPAVQAASDAIRNLLKLASELG 129 (160)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcceeeeccccceecCChHHHHHHHHHHHHHHHHHHhC
Confidence 5677777777777766666665555556677777654443 3222 4677999999999999999999999
Q ss_pred CCCCCccc
Q 007606 578 GLPGGRVN 585 (596)
Q Consensus 578 ~~~~~~~~ 585 (596)
--|..|-+
T Consensus 130 ltP~arak 137 (160)
T COG3747 130 LTPSARAK 137 (160)
T ss_pred CChHHHHh
Confidence 99998844
Done!