Query 007606
Match_columns 596
No_of_seqs 468 out of 3061
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 05:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bpz_A Potassium/sodium hyperp 100.0 3.7E-29 1.2E-33 240.6 22.7 180 296-491 2-181 (202)
2 3ukn_A Novel protein similar t 100.0 2.8E-30 9.4E-35 250.4 14.7 196 292-503 1-196 (212)
3 2ptm_A Hyperpolarization-activ 100.0 4.5E-29 1.5E-33 239.2 22.5 180 297-491 2-181 (198)
4 3beh_A MLL3241 protein; transm 100.0 6.8E-30 2.3E-34 267.6 9.9 180 237-491 156-335 (355)
5 3dn7_A Cyclic nucleotide bindi 99.9 2.6E-22 8.8E-27 191.0 14.7 175 366-568 6-181 (194)
6 4ev0_A Transcription regulator 99.8 1.7E-19 5.9E-24 174.3 19.3 189 369-586 1-202 (216)
7 3dv8_A Transcriptional regulat 99.8 4.6E-19 1.6E-23 171.8 16.9 184 367-579 3-199 (220)
8 3e97_A Transcriptional regulat 99.8 8.5E-19 2.9E-23 171.4 18.8 190 366-586 5-214 (231)
9 3fx3_A Cyclic nucleotide-bindi 99.8 4.4E-19 1.5E-23 174.2 16.5 194 364-586 8-216 (237)
10 3dkw_A DNR protein; CRP-FNR, H 99.8 7.4E-19 2.5E-23 171.1 16.6 192 366-586 8-217 (227)
11 1zyb_A Transcription regulator 99.8 1.3E-18 4.4E-23 170.5 17.4 195 364-586 15-225 (232)
12 3d0s_A Transcriptional regulat 99.8 5.5E-19 1.9E-23 172.2 14.1 192 366-586 5-216 (227)
13 4f8a_A Potassium voltage-gated 99.8 1.5E-18 5.2E-23 159.2 15.4 142 345-501 5-146 (160)
14 2gau_A Transcriptional regulat 99.8 4.5E-18 1.5E-22 166.4 16.5 187 371-586 14-219 (232)
15 2fmy_A COOA, carbon monoxide o 99.8 2.7E-18 9.3E-23 166.6 13.6 177 367-579 4-197 (220)
16 1ft9_A Carbon monoxide oxidati 99.8 4.5E-18 1.6E-22 165.3 14.4 183 368-586 1-203 (222)
17 3iwz_A CAP-like, catabolite ac 99.8 2E-17 6.9E-22 161.2 17.9 185 366-578 10-216 (230)
18 3ryp_A Catabolite gene activat 99.7 5.7E-17 1.9E-21 155.7 18.9 178 373-578 2-196 (210)
19 2oz6_A Virulence factor regula 99.7 5.8E-17 2E-21 155.3 17.5 181 378-586 1-203 (207)
20 1o5l_A Transcriptional regulat 99.7 1.8E-17 6.2E-22 160.1 12.8 180 372-580 4-195 (213)
21 3gyd_A CNMP-BD protein, cyclic 99.7 6.5E-17 2.2E-21 153.0 14.7 135 345-490 13-152 (187)
22 3ocp_A PRKG1 protein; serine/t 99.7 8.6E-17 3E-21 144.1 13.7 126 351-491 7-132 (139)
23 2pqq_A Putative transcriptiona 99.7 7.2E-17 2.5E-21 145.8 13.1 142 366-536 4-146 (149)
24 3idb_B CAMP-dependent protein 99.7 1.5E-16 5.3E-21 146.3 15.1 131 356-499 27-157 (161)
25 3kcc_A Catabolite gene activat 99.7 3.3E-16 1.1E-20 156.1 18.0 176 376-579 55-247 (260)
26 3e6c_C CPRK, cyclic nucleotide 99.7 1.5E-16 5.3E-21 157.4 15.1 186 369-586 11-216 (250)
27 3mdp_A Cyclic nucleotide-bindi 99.7 1.2E-16 4E-21 143.3 11.3 126 366-502 5-132 (142)
28 1wgp_A Probable cyclic nucleot 99.7 1.2E-16 4E-21 142.7 9.2 125 367-491 6-130 (137)
29 1orq_C Potassium channel; volt 99.6 1.8E-16 6.3E-21 154.3 7.3 200 50-297 7-220 (223)
30 3la7_A Global nitrogen regulat 99.6 4.1E-15 1.4E-19 146.5 16.1 180 380-586 30-232 (243)
31 3pna_A CAMP-dependent protein 99.6 4.7E-15 1.6E-19 135.3 14.5 115 362-491 33-147 (154)
32 2z69_A DNR protein; beta barre 99.6 4.8E-15 1.7E-19 134.6 14.4 116 366-491 11-127 (154)
33 2bgc_A PRFA; bacterial infecti 99.6 1.2E-14 4E-19 142.7 17.9 182 376-586 2-209 (238)
34 1vp6_A CNBD, cyclic-nucleotide 99.6 4.8E-15 1.7E-19 132.2 13.0 110 365-491 9-118 (138)
35 3shr_A CGMP-dependent protein 99.6 1.7E-14 5.8E-19 146.6 16.7 130 347-491 19-148 (299)
36 2d93_A RAP guanine nucleotide 99.6 2E-15 6.8E-20 134.3 7.1 124 353-491 2-127 (134)
37 1o7f_A CAMP-dependent RAP1 gua 99.6 1.7E-14 6E-19 156.0 15.8 142 352-505 27-169 (469)
38 4ava_A Lysine acetyltransferas 99.5 7.7E-14 2.6E-18 144.0 16.8 113 366-490 12-124 (333)
39 3shr_A CGMP-dependent protein 99.5 9.4E-14 3.2E-18 141.0 15.7 118 363-491 153-272 (299)
40 3tnp_B CAMP-dependent protein 99.5 9.7E-14 3.3E-18 147.8 15.9 124 357-491 135-258 (416)
41 2qcs_B CAMP-dependent protein 99.5 2.7E-13 9.2E-18 136.9 17.2 127 364-502 154-281 (291)
42 4h33_A LMO2059 protein; bilaye 99.5 2.3E-14 7.7E-19 127.9 6.1 92 243-334 44-135 (137)
43 3of1_A CAMP-dependent protein 99.5 1.9E-13 6.3E-18 134.2 13.0 114 364-491 122-235 (246)
44 3of1_A CAMP-dependent protein 99.5 1.6E-13 5.4E-18 134.7 12.4 112 365-491 5-116 (246)
45 2qcs_B CAMP-dependent protein 99.5 5.4E-13 1.9E-17 134.7 15.9 120 357-491 29-148 (291)
46 3b02_A Transcriptional regulat 99.5 2.2E-13 7.5E-18 129.3 11.5 158 393-586 2-178 (195)
47 4din_B CAMP-dependent protein 99.5 1.2E-13 4E-18 145.5 10.4 118 363-490 244-362 (381)
48 4din_B CAMP-dependent protein 99.4 4.6E-13 1.6E-17 140.9 12.2 120 357-491 120-239 (381)
49 3vou_A ION transport 2 domain 99.4 4.5E-13 1.5E-17 121.4 10.2 87 242-328 52-148 (148)
50 3tnp_B CAMP-dependent protein 99.4 6.1E-13 2.1E-17 141.6 12.3 115 365-490 265-386 (416)
51 2zcw_A TTHA1359, transcription 99.4 4.8E-13 1.6E-17 127.6 9.6 164 386-586 1-185 (202)
52 1o7f_A CAMP-dependent RAP1 gua 99.4 3E-12 1E-16 138.4 15.0 118 360-491 330-449 (469)
53 2r9r_B Paddle chimera voltage 99.4 3.9E-13 1.3E-17 146.1 7.1 62 239-300 372-433 (514)
54 3cf6_E RAP guanine nucleotide 99.3 7.5E-12 2.6E-16 140.9 12.2 131 346-491 12-144 (694)
55 4f7z_A RAP guanine nucleotide 99.3 1.9E-11 6.4E-16 144.3 15.2 127 354-492 29-158 (999)
56 3eff_K Voltage-gated potassium 99.3 9.7E-12 3.3E-16 111.3 8.5 61 241-301 39-99 (139)
57 2a9h_A Voltage-gated potassium 99.2 1.3E-11 4.5E-16 111.9 6.6 67 239-305 81-147 (155)
58 4f7z_A RAP guanine nucleotide 99.2 2.2E-10 7.5E-15 135.2 16.6 129 347-490 318-448 (999)
59 2ih3_C Voltage-gated potassium 99.2 2E-11 6.9E-16 106.4 5.5 61 240-300 59-119 (122)
60 2q67_A Potassium channel prote 99.1 7.8E-11 2.7E-15 101.3 7.3 61 242-302 49-109 (114)
61 3ldc_A Calcium-gated potassium 99.1 1.9E-10 6.3E-15 92.8 7.8 54 242-295 28-81 (82)
62 3ouf_A Potassium channel prote 99.1 2.2E-10 7.4E-15 95.5 7.2 55 243-297 33-87 (97)
63 2k1e_A Water soluble analogue 99.0 2.8E-11 9.5E-16 102.3 0.1 59 242-300 40-98 (103)
64 3pjs_K KCSA, voltage-gated pot 99.0 2.6E-11 8.8E-16 111.8 -0.5 63 241-303 66-128 (166)
65 3um7_A Potassium channel subfa 98.8 1.1E-08 3.8E-13 102.5 9.4 56 242-297 115-170 (309)
66 2qks_A KIR3.1-prokaryotic KIR 98.7 2.6E-08 8.9E-13 101.0 7.9 58 242-299 78-135 (321)
67 1p7b_A Integral membrane chann 98.6 2.9E-08 1E-12 100.9 6.3 58 242-299 96-153 (333)
68 1xl4_A Inward rectifier potass 98.6 4.6E-08 1.6E-12 98.4 6.9 57 241-297 81-137 (301)
69 3ukm_A Potassium channel subfa 98.5 1.4E-07 4.8E-12 93.1 8.0 56 242-297 93-148 (280)
70 3um7_A Potassium channel subfa 98.5 5.9E-08 2E-12 97.3 5.0 61 242-302 224-290 (309)
71 3ukm_A Potassium channel subfa 98.4 1.7E-07 5.7E-12 92.6 5.0 55 243-297 202-263 (280)
72 3rvy_A ION transport protein; 98.3 4.3E-07 1.5E-11 91.3 6.2 65 237-301 175-245 (285)
73 4gx0_A TRKA domain protein; me 98.2 1.3E-06 4.3E-11 96.6 7.7 54 242-295 51-105 (565)
74 1lnq_A MTHK channels, potassiu 98.2 7.4E-08 2.5E-12 99.2 -2.2 57 242-298 45-101 (336)
75 3sya_A G protein-activated inw 98.0 6.3E-06 2.1E-10 83.6 7.2 58 243-300 92-151 (340)
76 3spc_A Inward-rectifier K+ cha 97.9 1.3E-05 4.6E-10 81.3 7.2 58 242-299 94-153 (343)
77 4dxw_A Navrh, ION transport pr 94.2 0.14 4.9E-06 48.7 8.9 57 240-296 163-224 (229)
78 2kyh_A KVAP, voltage-gated pot 84.5 0.49 1.7E-05 41.7 2.7 77 53-144 23-100 (147)
79 3rns_A Cupin 2 conserved barre 67.9 19 0.00066 33.6 8.9 68 390-478 39-106 (227)
80 3fjs_A Uncharacterized protein 66.4 25 0.00084 28.8 8.3 67 390-477 38-104 (114)
81 2ozj_A Cupin 2, conserved barr 64.8 28 0.00095 28.1 8.3 65 393-478 43-107 (114)
82 3lwc_A Uncharacterized protein 59.8 69 0.0024 26.4 9.9 45 392-444 44-88 (119)
83 3kg2_A Glutamate receptor 2; I 58.5 11 0.00038 42.5 6.1 55 242-297 563-617 (823)
84 2pfw_A Cupin 2, conserved barr 58.3 70 0.0024 25.6 9.9 68 390-478 36-103 (116)
85 1yhf_A Hypothetical protein SP 56.6 49 0.0017 26.5 8.4 67 391-478 43-109 (115)
86 1ors_C Potassium channel; volt 50.0 16 0.00054 31.1 4.3 77 51-144 6-85 (132)
87 4e2g_A Cupin 2 conserved barre 42.4 77 0.0026 25.8 7.6 48 390-444 43-90 (126)
88 1dgw_A Canavalin; duplicated s 41.2 34 0.0012 30.6 5.4 52 390-444 43-94 (178)
89 2bnm_A Epoxidase; oxidoreducta 41.1 99 0.0034 27.6 8.7 49 393-444 122-173 (198)
90 1yfu_A 3-hydroxyanthranilate-3 40.2 40 0.0014 30.1 5.4 59 407-482 54-113 (174)
91 3h8u_A Uncharacterized conserv 40.1 42 0.0014 27.5 5.4 49 390-444 41-90 (125)
92 2q30_A Uncharacterized protein 40.1 1.3E+02 0.0045 23.4 8.5 67 392-478 37-105 (110)
93 2i45_A Hypothetical protein; n 39.2 39 0.0013 26.9 4.9 69 395-483 35-103 (107)
94 3rns_A Cupin 2 conserved barre 38.2 1.1E+02 0.0038 28.2 8.7 68 390-478 155-223 (227)
95 3bcw_A Uncharacterized protein 34.7 1E+02 0.0035 25.6 7.0 45 394-445 55-99 (123)
96 3d82_A Cupin 2, conserved barr 34.4 86 0.0029 24.1 6.3 50 409-479 51-100 (102)
97 1v70_A Probable antibiotics sy 34.1 69 0.0023 24.7 5.7 47 391-444 31-78 (105)
98 2gu9_A Tetracenomycin polyketi 33.6 60 0.0021 25.6 5.3 47 391-444 24-73 (113)
99 3es1_A Cupin 2, conserved barr 31.9 52 0.0018 29.4 4.9 48 390-443 81-128 (172)
100 3es4_A Uncharacterized protein 31.1 38 0.0013 28.1 3.5 45 394-445 48-92 (116)
101 2q1z_B Anti-sigma factor CHRR, 30.3 96 0.0033 28.1 6.6 65 389-478 126-192 (195)
102 2fqp_A Hypothetical protein BP 30.0 33 0.0011 26.9 2.9 50 391-445 21-71 (97)
103 4e2q_A Ureidoglycine aminohydr 28.8 1.2E+02 0.0041 29.1 7.1 70 391-480 73-142 (266)
104 4axo_A EUTQ, ethanolamine util 28.2 1.7E+02 0.006 25.3 7.5 31 407-444 83-113 (151)
105 4b29_A Dimethylsulfoniopropion 28.0 99 0.0034 28.6 6.1 33 406-444 150-182 (217)
106 1o5u_A Novel thermotoga mariti 28.0 2.2E+02 0.0076 22.4 10.2 47 390-444 33-79 (101)
107 3nw4_A Gentisate 1,2-dioxygena 28.0 1.4E+02 0.0049 30.0 7.9 79 391-490 282-360 (368)
108 2pyt_A Ethanolamine utilizatio 27.1 2.2E+02 0.0075 23.8 7.9 45 392-445 61-105 (133)
109 3d0j_A Uncharacterized protein 27.0 1.2E+02 0.0039 26.1 5.9 63 404-481 46-110 (140)
110 2d40_A Z3393, putative gentisa 26.2 1.8E+02 0.006 29.1 8.2 76 392-488 272-347 (354)
111 3ibm_A Cupin 2, conserved barr 26.0 1.2E+02 0.0042 26.5 6.3 47 391-444 59-105 (167)
112 2db7_A Hairy/enhancer-OF-split 25.4 1.3E+02 0.0045 22.0 5.1 35 303-337 22-59 (64)
113 1zvf_A 3-hydroxyanthranilate 3 24.7 89 0.0031 27.9 4.9 85 381-482 12-115 (176)
114 1sfn_A Conserved hypothetical 24.5 2.7E+02 0.0091 25.9 8.8 65 392-479 54-118 (246)
115 1uij_A Beta subunit of beta co 24.2 82 0.0028 32.4 5.4 53 389-444 50-102 (416)
116 3bu7_A Gentisate 1,2-dioxygena 23.4 65 0.0022 32.9 4.3 49 391-445 126-174 (394)
117 3jzv_A Uncharacterized protein 23.2 1.1E+02 0.0038 26.8 5.4 46 392-444 57-102 (166)
118 2b8m_A Hypothetical protein MJ 23.0 88 0.003 25.1 4.5 45 393-444 32-77 (117)
119 2o1q_A Putative acetyl/propion 22.5 1.3E+02 0.0045 25.6 5.7 51 390-445 46-96 (145)
120 3kgz_A Cupin 2 conserved barre 22.3 1.1E+02 0.0039 26.4 5.2 46 392-444 48-93 (156)
121 4i4a_A Similar to unknown prot 22.0 1.6E+02 0.0055 23.8 6.0 79 391-490 37-119 (128)
122 2ea7_A 7S globulin-1; beta bar 21.8 92 0.0032 32.2 5.2 53 389-444 62-114 (434)
123 1vj2_A Novel manganese-contain 21.7 97 0.0033 25.4 4.5 46 392-444 52-97 (126)
124 3ebr_A Uncharacterized RMLC-li 21.6 1.5E+02 0.0053 25.7 6.0 67 389-478 43-113 (159)
125 2cav_A Protein (canavalin); vi 20.9 1E+02 0.0035 32.0 5.4 53 389-444 87-139 (445)
126 1fi2_A Oxalate oxidase, germin 20.5 1.9E+02 0.0066 25.9 6.7 53 390-444 74-130 (201)
127 1y9q_A Transcriptional regulat 20.5 2.1E+02 0.0072 25.2 6.9 45 393-444 109-155 (192)
128 2qnk_A 3-hydroxyanthranilate 3 20.3 3.4E+02 0.012 26.1 8.3 69 390-480 209-277 (286)
129 2opk_A Hypothetical protein; p 20.3 1.2E+02 0.0041 24.4 4.7 34 406-444 51-84 (112)
No 1
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=3.7e-29 Score=240.64 Aligned_cols=180 Identities=19% Similarity=0.340 Sum_probs=164.6
Q ss_pred HhcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcchhhhHHHHHHHHHHHHhhcCccc
Q 007606 296 QSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMF 375 (596)
Q Consensus 296 ~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F 375 (596)
++++.+..+|+++++.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||+.|+.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4678899999999999999999999999999999999999997 578899999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCC
Q 007606 376 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPD 455 (596)
Q Consensus 376 ~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~ 455 (596)
.+++++++..++..++...|+||++|+++|++++.+|||.+|.|+++.. +|++ ..+++|++||+.+++..
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~g~~-----~~l~~G~~fGe~~~~~~---- 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNKE-----MKLSDGSYFGEICLLTR---- 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECT-TSCC-----EEEETTCEECHHHHHHC----
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEEC-CCeE-----EEEcCCCEeccHHHhcC----
Confidence 9999999999999999999999999999999999999999999999864 4443 35899999999987621
Q ss_pred CCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 456 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 456 s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
.++.++++|.++|+++.|++++|.++++++|
T Consensus 151 -----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p 181 (202)
T 3bpz_A 151 -----GRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181 (202)
T ss_dssp -----SBCSSEEEESSCEEEEEEEHHHHHHHHHHSG
T ss_pred -----CCcccEEEEeeEEEEEEEEHHHHHHHHHHCH
Confidence 2568899999999999999999999999993
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=2.8e-30 Score=250.39 Aligned_cols=196 Identities=19% Similarity=0.344 Sum_probs=165.6
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcchhhhHHHHHHHHHHHHhhc
Q 007606 292 TIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKK 371 (596)
Q Consensus 292 ~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~l~~ 371 (596)
++++++++.+..+|+++|+.+++||+.+++|++|+.||++||+|.|+.+++.+++++++.||++|+.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468899999999999999999999999999999999999999999998899999999999999999999999988777 7
Q ss_pred CccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhcc
Q 007606 372 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSA 451 (596)
Q Consensus 372 ~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~ 451 (596)
+|+|.+++++++..++..++.+.|+|||+|+++|++++.+|||.+|.|+++.. |. .+..+++|++||+.+++..
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~----~~~~l~~G~~fGe~~~~~~ 153 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD--NT----VLAILGKGDLIGSDSLTKE 153 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS--SC----EEEEECTTCEEECSCCSSS
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC--Ce----EEEEecCCCCcCcHHhccC
Confidence 99999999999999999999999999999999999999999999999999862 22 2689999999999986521
Q ss_pred CCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchh
Q 007606 452 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDI 503 (596)
Q Consensus 452 ~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~ 503 (596)
. ..++.++++|+++|+++.|++++|.++++++ |.+....++..
T Consensus 154 ~-------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~--p~~~~~~~~~l 196 (212)
T 3ukn_A 154 Q-------VIKTNANVKALTYCDLQYISLKGLREVLRLY--PEYAQKFVSEI 196 (212)
T ss_dssp S-------CCBBCSEEEESSCEEEEEEEHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred C-------CCCcceEEEEcccEEEEEEeHHHHHHHHHHC--hHHHHHHHHHH
Confidence 1 1157899999999999999999999999999 44444443333
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=4.5e-29 Score=239.16 Aligned_cols=180 Identities=15% Similarity=0.317 Sum_probs=166.3
Q ss_pred hcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcchhhhHHHHHHHHHHHHhhcCcccc
Q 007606 297 SGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQ 376 (596)
Q Consensus 297 ~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~ 376 (596)
+++.+..+|+++++.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||++||.++..+.+.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 568889999999999999999999999999999999999997 5788999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCC
Q 007606 377 MMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDP 456 (596)
Q Consensus 377 ~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s 456 (596)
+++++++..++..++.+.|+||++|+++|+.++.+|||.+|.|+++.. +|+ .+..+++|++||+.+++..
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~-~g~----~~~~l~~G~~fGe~~~~~~----- 150 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMS-DGV----IATSLSDGSYFGEICLLTR----- 150 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECT-TSC----EEEEECTTCEESCHHHHHS-----
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEec-CCe----EEEEecCCCEechHHHcCC-----
Confidence 999999999999999999999999999999999999999999999973 343 2589999999999987621
Q ss_pred CCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 457 LSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 457 ~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
.++.++++|.++|+++.|++++|.++++++|
T Consensus 151 ----~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p 181 (198)
T 2ptm_A 151 ----ERRVASVKCETYCTLFSLSVQHFNQVLDEFP 181 (198)
T ss_dssp ----SCCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred ----CccceEEEEeeEEEEEEEeHHHHHHHHHHCh
Confidence 2568999999999999999999999999994
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.96 E-value=6.8e-30 Score=267.56 Aligned_cols=180 Identities=19% Similarity=0.297 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 007606 237 KAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWR 316 (596)
Q Consensus 237 ~~~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m 316 (596)
++.+..|..|+||+++||||+||||+.|.|..++++++++|++|.+++++.+|.+++.+.+...+
T Consensus 156 ~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~--------------- 220 (355)
T 3beh_A 156 PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR--------------- 220 (355)
T ss_dssp HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 34456799999999999999999999999999999999999999999999999998776431110
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEec
Q 007606 317 TFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYV 396 (596)
Q Consensus 317 ~~~~l~~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~ 396 (596)
+++. ...+.++++++|+++++++++.++..++.+.++
T Consensus 221 -------------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~ 257 (355)
T 3beh_A 221 -------------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVP 257 (355)
T ss_dssp -------------HHHH------------------------------HHHC-----------------------------
T ss_pred -------------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEEC
Confidence 0000 023578888999999999999999999999999
Q ss_pred CCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEE
Q 007606 397 QECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAF 476 (596)
Q Consensus 397 kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll 476 (596)
|||.|+++||+++++|+|.+|.++++..+ + ..+++|++|||.+++ .+.++.++++|.++|+++
T Consensus 258 ~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---------~~~~~~~~~~A~~~~~l~ 320 (355)
T 3beh_A 258 AGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---------SGEPRSATVSAATTVSLL 320 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---------CCCCcceEEEECccEEEE
Confidence 99999999999999999999999998764 1 469999999999865 222568899999999999
Q ss_pred EEcHHHHHHHHHHcc
Q 007606 477 AINTDDLRAIVYQYW 491 (596)
Q Consensus 477 ~i~~~~f~~Ll~~~P 491 (596)
.+++++|.++++++|
T Consensus 321 ~i~~~~f~~ll~~~p 335 (355)
T 3beh_A 321 SLHSADFQMLCSSSP 335 (355)
T ss_dssp ---------------
T ss_pred EEeHHHHHHHHHHCH
Confidence 999999999999993
No 5
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.88 E-value=2.6e-22 Score=191.03 Aligned_cols=175 Identities=11% Similarity=0.123 Sum_probs=126.3
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeee
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 444 (596)
..++++++.|.++++++++.+...++.+.|+||++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEEe
Confidence 567888999999999999999999999999999999999999999999999999999864 555543 68999999999
Q ss_pred chhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHH
Q 007606 445 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 524 (596)
Q Consensus 445 e~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~ 524 (596)
+...+. ...++.++++|+++|+++.|++++|.++++++ |.+.......+++.+.
T Consensus 84 e~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l~ 137 (194)
T 3dn7_A 84 DYMAFQ--------KQQPADFYIQSVENCELLSITYTEQENLFERI------------------PALERYFRLVYQKSFA 137 (194)
T ss_dssp CHHHHH--------HTCBCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------TTHHHHHHHHHHHHHH
T ss_pred ehHHHh--------cCCCCceEEEEECCEEEEEEeHHHHHHHHHhC------------------HHHHHHHHHHHHHHHH
Confidence 874321 12256889999999999999999999999999 7777788888888889
Q ss_pred HHHHHHhhhhHHHHHhhhhhhhhhcCCCCCchhhHHHHhHHHHH
Q 007606 525 RYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTY 568 (596)
Q Consensus 525 ~~~~r~~~~~~~~a~erY~~~~~~~p~~~~r~~~~~iAs~~~~~ 568 (596)
..++|...+...++++||..++.++|++..++|+++||+.+...
T Consensus 138 ~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~s 181 (194)
T 3dn7_A 138 AAQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFT 181 (194)
T ss_dssp HHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999988764
No 6
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.83 E-value=1.7e-19 Score=174.25 Aligned_cols=189 Identities=16% Similarity=0.175 Sum_probs=155.1
Q ss_pred hhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechh
Q 007606 369 LKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEEL 447 (596)
Q Consensus 369 l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ 447 (596)
|+++|+|.++++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++. .+..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQER--TLALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEE--EEEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEEeehh
Confidence 467899999999999999999999999999999999999999999999999999864 45553 369999999999988
Q ss_pred hhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHH
Q 007606 448 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 527 (596)
Q Consensus 448 ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~ 527 (596)
++. ..++.++++|.++|+++.+++++|.++++++ |.+.......+...+....
T Consensus 79 ~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~~~~~~ 131 (216)
T 4ev0_A 79 LLD---------EGERSASAVAVEDTELLALFREDYLALIRRL------------------PLVAHNLAALLARRLREAD 131 (216)
T ss_dssp HHH---------CCBCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHH
T ss_pred hcC---------CCCcceEEEEcCCEEEEEEcHHHHHHHHHHC------------------cHHHHHHHHHHHHHHHHHH
Confidence 752 1246889999999999999999999999999 5666666666677778888
Q ss_pred HHHhhhhHHHHHhhhhhhhh----hcCCCCCchhhHHHHhHHH------HHHHHHhhhcCCC--CCCcccc
Q 007606 528 KRKLEGSLYAKENILQDQKA----EAGGKPSKFGTAIYATQFF------TYVRRSVKRNGGL--PGGRVNI 586 (596)
Q Consensus 528 ~r~~~~~~~~a~erY~~~~~----~~p~~~~r~~~~~iAs~~~------~~~~~~~~~~~~~--~~~~~~~ 586 (596)
++.......++++|+..++. +.|.+..++++++||+.+. ..++.-+++.|.. .+++|.|
T Consensus 132 ~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 202 (216)
T 4ev0_A 132 LELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEV 202 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 89999999999999988874 4678889999999999883 2344556666654 2333444
No 7
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.81 E-value=4.6e-19 Score=171.76 Aligned_cols=184 Identities=10% Similarity=0.032 Sum_probs=153.4
Q ss_pred HHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCe--e
Q 007606 367 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDF--W 443 (596)
Q Consensus 367 ~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~--f 443 (596)
++++++|+|.++++++++.+...++.+.|+||++|+++|++++.+|||.+|.|+++..+ +|++. ++..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREI--TLYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEE--EEEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEE--EEEecCCCCeeeh
Confidence 57889999999999999999999999999999999999999999999999999999864 45553 3689999999 6
Q ss_pred echhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHH
Q 007606 444 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAW 523 (596)
Q Consensus 444 Ge~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~ 523 (596)
|+.+++ ...++..+++|+++|+++.|++++|.++++++ |.+.......+.+.+
T Consensus 81 g~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l 133 (220)
T 3dv8_A 81 SASCIM---------RSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDS------------------APVANYTNELMATRF 133 (220)
T ss_dssp GGGGGC---------TTCCCCCEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHh---------CCCCCceEEEEeeeeEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
Confidence 887764 22357889999999999999999999999999 566666666666677
Q ss_pred HHHHHHHhhhhHHHHHhhhhhhhhhcCC----CCCchhhHHHHhHHH------HHHHHHhhhcCCC
Q 007606 524 CRYKKRKLEGSLYAKENILQDQKAEAGG----KPSKFGTAIYATQFF------TYVRRSVKRNGGL 579 (596)
Q Consensus 524 ~~~~~r~~~~~~~~a~erY~~~~~~~p~----~~~r~~~~~iAs~~~------~~~~~~~~~~~~~ 579 (596)
....++.......++++|+..++.+.|+ ...++++++||+.+. ..+++-+++.|..
T Consensus 134 ~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I 199 (220)
T 3dv8_A 134 SDVMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLV 199 (220)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 7778888889999999999988877664 345899999999883 3455666777764
No 8
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.81 E-value=8.5e-19 Score=171.39 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=150.4
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeee
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 444 (596)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 468899999999999999999999999999999999999999999999999999999865 455533 68999999999
Q ss_pred chhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHH
Q 007606 445 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 524 (596)
Q Consensus 445 e~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~ 524 (596)
+.+++. ..++.++++|+++|+++.|++++|.++++++ |.+.......+...+.
T Consensus 83 ~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~ 135 (231)
T 3e97_A 83 ETAVLA---------HQERSASVRALTPVRTLMLHREHFELILRRH------------------PRVLWNLAEMLARRVT 135 (231)
T ss_dssp TTTTTC---------CCCCCEEEEESSCEEEEEECHHHHHHHHHHC------------------HHHHHHHHHHHHHHHH
T ss_pred eHHHhC---------CCCceEEEEECCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHH
Confidence 998651 2357899999999999999999999999999 4444333334444445
Q ss_pred HHHHHHhhhhHHHHH-hhhhhhhhhcC----------CCCCchhhHHHHhHHH------HHHHHHhhhcCCC--CCCccc
Q 007606 525 RYKKRKLEGSLYAKE-NILQDQKAEAG----------GKPSKFGTAIYATQFF------TYVRRSVKRNGGL--PGGRVN 585 (596)
Q Consensus 525 ~~~~r~~~~~~~~a~-erY~~~~~~~p----------~~~~r~~~~~iAs~~~------~~~~~~~~~~~~~--~~~~~~ 585 (596)
...++.. ...+++ +|+..++.+.+ .+..++++++||+.+. ..++.-+++.|.. .+++|.
T Consensus 136 ~~~~~~~--~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~ 213 (231)
T 3e97_A 136 FLNDELI--AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVT 213 (231)
T ss_dssp HHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEE
T ss_pred HHHHHHH--HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEE
Confidence 5555555 667888 99988887765 4778899999999883 3445666777753 344455
Q ss_pred c
Q 007606 586 I 586 (596)
Q Consensus 586 ~ 586 (596)
|
T Consensus 214 i 214 (231)
T 3e97_A 214 L 214 (231)
T ss_dssp E
T ss_pred E
Confidence 4
No 9
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.80 E-value=4.4e-19 Score=174.16 Aligned_cols=194 Identities=10% Similarity=0.036 Sum_probs=156.2
Q ss_pred HHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCe
Q 007606 364 LCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDF 442 (596)
Q Consensus 364 ~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~ 442 (596)
...++++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~ 85 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGES 85 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEE
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCE
Confidence 34578999999999999999999999999999999999999999999999999999999864 455543 689999999
Q ss_pred eechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHH
Q 007606 443 WGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAA 522 (596)
Q Consensus 443 fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~ 522 (596)
||+.+++. ..++.++++|+++|+++.|++++|.++++++ |.+.......+.+.
T Consensus 86 ~G~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~ 138 (237)
T 3fx3_A 86 FGEAVALR---------NTPYPVSAEAVTPCEVMHIPSPVFVSLMRRD------------------PEICISILATTFGH 138 (237)
T ss_dssp ECHHHHHH---------TCCCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHH
T ss_pred echHHHhc---------CCCCCceEEECCceEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHH
Confidence 99998762 1256889999999999999999999999999 55555555555566
Q ss_pred HHHHHHHHhhhhHHHHHhhhhhhhhhc-----CCCCCchh--hHHHHhHHH------HHHHHHhhhcCCCCCCc-ccc
Q 007606 523 WCRYKKRKLEGSLYAKENILQDQKAEA-----GGKPSKFG--TAIYATQFF------TYVRRSVKRNGGLPGGR-VNI 586 (596)
Q Consensus 523 ~~~~~~r~~~~~~~~a~erY~~~~~~~-----p~~~~r~~--~~~iAs~~~------~~~~~~~~~~~~~~~~~-~~~ 586 (596)
+....++.......++++|+..++.+. |+...++| +++||+.+. ..+++-+++.|..-+++ |.|
T Consensus 139 l~~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi~~~~~~i~I 216 (237)
T 3fx3_A 139 LHSLVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGVTVKRNHAEI 216 (237)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEECCTTEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEeeCCEEEE
Confidence 777888899999999999998888775 44456677 899999873 23445556666543333 444
No 10
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.80 E-value=7.4e-19 Score=171.12 Aligned_cols=192 Identities=10% Similarity=0.108 Sum_probs=155.2
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeee
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 444 (596)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 568999999999999999999999999999999999999999999999999999998754 455533 68999999999
Q ss_pred chhhhccCCCCCCCCCCC-cccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHH
Q 007606 445 EELATSALDPDPLSNIPH-SNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAW 523 (596)
Q Consensus 445 e~~ll~~~~~~s~~~~~~-s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~ 523 (596)
+.+++ ...+ +.++++|.++|+++.+++++|.++++++ |.+.......+....
T Consensus 86 ~~~~~---------~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l 138 (227)
T 3dkw_A 86 EAMMF---------MDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDN------------------TPLALALLAKLSTRL 138 (227)
T ss_dssp CTTTT---------TTCSBCSSCEEESSCCEEEEEESHHHHHHHSSC------------------THHHHHHHHHHHHHH
T ss_pred eHHhc---------CCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
Confidence 98864 1124 6889999999999999999999999999 455544444555556
Q ss_pred HHHHHHHhhhhHHHHHhhhhhhh-hhcCC-------CCCchhhHHHHhHHH------HHHHHHhhhcCCC--CCCcccc
Q 007606 524 CRYKKRKLEGSLYAKENILQDQK-AEAGG-------KPSKFGTAIYATQFF------TYVRRSVKRNGGL--PGGRVNI 586 (596)
Q Consensus 524 ~~~~~r~~~~~~~~a~erY~~~~-~~~p~-------~~~r~~~~~iAs~~~------~~~~~~~~~~~~~--~~~~~~~ 586 (596)
....++.......++++|+..++ +..+. +..++++++||+.+. ..++.-+++.|.. .+++|.|
T Consensus 139 ~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 217 (227)
T 3dkw_A 139 HQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISI 217 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEE
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 66677888888899999998765 44554 778999999999873 2345666777763 3444554
No 11
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.79 E-value=1.3e-18 Score=170.53 Aligned_cols=195 Identities=13% Similarity=0.125 Sum_probs=159.0
Q ss_pred HHHHHhhcCccccCCcHHHHHHHHhh--ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCC
Q 007606 364 LCLEVLKKVPMFQMMGKSILSEMCKC--LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTG 440 (596)
Q Consensus 364 ~~~~~l~~~~~F~~ls~~~l~~l~~~--~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G 440 (596)
.....++++|+|.++++++++.++.. ++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++.+ +..+++|
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G 92 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAP 92 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESS
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCC
Confidence 34567899999999999999999998 999999999999999999999999999999998754 455533 6899999
Q ss_pred CeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHH
Q 007606 441 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQ 520 (596)
Q Consensus 441 ~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e 520 (596)
++||+.+++. ..+++.++++|+++|+++.|++++|.++++++ |.+.......+.
T Consensus 93 ~~fG~~~~~~--------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~ 146 (232)
T 1zyb_A 93 YLIEPQSLFG--------MNTNYASSYVAHTEVHTVCISKAFVLSDLFRY------------------DIFRLNYMNIVS 146 (232)
T ss_dssp EEECGGGGSS--------SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGS------------------HHHHHHHHHHHH
T ss_pred CeeeehHHhC--------CCCCCceEEEEccceEEEEEEHHHHHHHhccC------------------HHHHHHHHHHHH
Confidence 9999998651 11226889999999999999999999999999 555555556666
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhhhhhhhc---C--CCCCchhhHHHHhHHH------HHHHHHhhhcCCCC--CCcccc
Q 007606 521 AAWCRYKKRKLEGSLYAKENILQDQKAEA---G--GKPSKFGTAIYATQFF------TYVRRSVKRNGGLP--GGRVNI 586 (596)
Q Consensus 521 ~~~~~~~~r~~~~~~~~a~erY~~~~~~~---p--~~~~r~~~~~iAs~~~------~~~~~~~~~~~~~~--~~~~~~ 586 (596)
..+....++.......++++|+..++.+. | .+..++++++||+.+. ..+++-+++.|... +++|.|
T Consensus 147 ~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I 225 (232)
T 1zyb_A 147 NRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILI 225 (232)
T ss_dssp HHHHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEE
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEE
Confidence 66778888899999999999998877663 3 4667899999998764 33556667777654 344544
No 12
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.79 E-value=5.5e-19 Score=172.24 Aligned_cols=192 Identities=18% Similarity=0.206 Sum_probs=156.9
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeee
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 444 (596)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 567899999999999999999999999999999999999999999999999999999865 455533 68999999999
Q ss_pred chhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHH
Q 007606 445 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 524 (596)
Q Consensus 445 e~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~ 524 (596)
+.+++. ..++.++++|+++|+++.|++++|.++++++ |.+.......+...+.
T Consensus 83 ~~~~~~---------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~ 135 (227)
T 3d0s_A 83 ELSIFD---------PGPRTSSATTITEVRAVSMDRDALRSWIADR------------------PEISEQLLRVLARRLR 135 (227)
T ss_dssp CHHHHS---------CSCCSSEEEESSCEEEEEEEHHHHHHTTSSC------------------HHHHHHHHHHHHHHHH
T ss_pred eHHHcC---------CCCceeEEEEcccEEEEEEeHHHHHHHHHHC------------------hHHHHHHHHHHHHHHH
Confidence 998761 1256889999999999999999999999999 5555555556666677
Q ss_pred HHHHHHhhhhHHHHHhhhhhhhhh-----------cCCCCCchhhHHHHhHHHH------HHHHHhhhcCCCC--CCccc
Q 007606 525 RYKKRKLEGSLYAKENILQDQKAE-----------AGGKPSKFGTAIYATQFFT------YVRRSVKRNGGLP--GGRVN 585 (596)
Q Consensus 525 ~~~~r~~~~~~~~a~erY~~~~~~-----------~p~~~~r~~~~~iAs~~~~------~~~~~~~~~~~~~--~~~~~ 585 (596)
...++.......++++|+..++.+ .|.+..++++++||+.+.. .+++-+++.|... +++|.
T Consensus 136 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~ 215 (227)
T 3d0s_A 136 RTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVL 215 (227)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 778888899999999999876654 2457788999999987643 2456667777543 34454
Q ss_pred c
Q 007606 586 I 586 (596)
Q Consensus 586 ~ 586 (596)
|
T Consensus 216 i 216 (227)
T 3d0s_A 216 I 216 (227)
T ss_dssp E
T ss_pred E
Confidence 4
No 13
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.79 E-value=1.5e-18 Score=159.16 Aligned_cols=142 Identities=18% Similarity=0.301 Sum_probs=116.0
Q ss_pred HHHHHhcchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEe
Q 007606 345 VENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT 424 (596)
Q Consensus 345 e~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~ 424 (596)
.+++++.||+++|.++..+++.++++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccc
Q 007606 425 NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPL 501 (596)
Q Consensus 425 ~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~ 501 (596)
+. .+..+++|++||+.+++.. ...++.++++|.++|+++.|++++|.++++++ |.+....++
T Consensus 85 --~~----~~~~~~~G~~fG~~~~~~~-------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~--p~~~~~~~~ 146 (160)
T 4f8a_A 85 --DE----VVAILGKGDVFGDVFWKEA-------TLAQSCANVRALTYCDLHVIKRDALQKVLEFY--TAFSHSFSR 146 (160)
T ss_dssp --TE----EEEEEETTCEEECCTTTCS-------SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHC--HHHHHHHHH
T ss_pred --CE----EEEEecCCCEeCcHHHhcC-------cccceEEEEEECCceEEEEEcHHHHHHHHHHH--HHHHHHHHH
Confidence 22 3689999999999986511 11256889999999999999999999999999 454444333
No 14
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.77 E-value=4.5e-18 Score=166.35 Aligned_cols=187 Identities=14% Similarity=0.156 Sum_probs=151.6
Q ss_pred cCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhh
Q 007606 371 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 449 (596)
Q Consensus 371 ~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll 449 (596)
.+|+|.++++++++.++..++.+.|+||++|+++|++++.+|+|.+|.|+++..+ +|++.+ +..+++|++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehhh
Confidence 4688999999999999999999999999999999999999999999999999754 345433 6899999999999876
Q ss_pred ccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHH
Q 007606 450 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 529 (596)
Q Consensus 450 ~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r 529 (596)
. ..++.++++|+++|+++.|++++|.++++++ |.+.......+.+.+....++
T Consensus 92 ~---------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~ 144 (232)
T 2gau_A 92 A---------EETCSSTAIAVENSKVLAIPVEAIEALLKGN------------------TSFCRYFLKALAKELGYAERR 144 (232)
T ss_dssp H---------TSCCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred C---------CCCcceEEEEecceEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 2 1256889999999999999999999999999 566666666777777888888
Q ss_pred HhhhhHHHHHhhhhhhhh----hc------CCCCCchhhHHHHhHHHH------HHHHHhhhcCCCC--CCcccc
Q 007606 530 KLEGSLYAKENILQDQKA----EA------GGKPSKFGTAIYATQFFT------YVRRSVKRNGGLP--GGRVNI 586 (596)
Q Consensus 530 ~~~~~~~~a~erY~~~~~----~~------p~~~~r~~~~~iAs~~~~------~~~~~~~~~~~~~--~~~~~~ 586 (596)
...+...++++|+..++- ++ |.+..++++++||+.+.. .+++-+++.|... +++|.|
T Consensus 145 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 219 (232)
T 2gau_A 145 TVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKI 219 (232)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEE
Confidence 999999999999987772 33 567889999999987642 3455666777643 344544
No 15
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.76 E-value=2.7e-18 Score=166.55 Aligned_cols=177 Identities=11% Similarity=0.101 Sum_probs=152.0
Q ss_pred HHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeech
Q 007606 367 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 446 (596)
Q Consensus 367 ~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~ 446 (596)
.+++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 45788999999999999999999999999999999999999999999999999997555666644 689999999998
Q ss_pred hhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHH
Q 007606 447 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRY 526 (596)
Q Consensus 447 ~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~ 526 (596)
. +.++++|+++|+++.|++++|.++++++ |.+.......+...+...
T Consensus 81 ~---------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~~~~~ 127 (220)
T 2fmy_A 81 H---------------TRAFIQAMEDTTILYTDIRNFQNIVVEF------------------PAFSLNMVKVLGDLLKNS 127 (220)
T ss_dssp C---------------SSSEEEESSSEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHH
T ss_pred c---------------cceEEEEcCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHH
Confidence 1 3679999999999999999999999999 666666666777777888
Q ss_pred HHHHhhhhHHHHHhhhhhhhhhcCC-----------CCCchhhHHHHhHHHH------HHHHHhhhcCCC
Q 007606 527 KKRKLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQFFT------YVRRSVKRNGGL 579 (596)
Q Consensus 527 ~~r~~~~~~~~a~erY~~~~~~~p~-----------~~~r~~~~~iAs~~~~------~~~~~~~~~~~~ 579 (596)
.++...+...++++|+..++.+.++ +..++++++||+.+.. .+++-+++.|..
T Consensus 128 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 197 (220)
T 2fmy_A 128 LTIINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL 197 (220)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE
Confidence 8899999999999999988876653 6678999999987753 355666777764
No 16
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.76 E-value=4.5e-18 Score=165.28 Aligned_cols=183 Identities=11% Similarity=0.109 Sum_probs=153.0
Q ss_pred HhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechh
Q 007606 368 VLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEEL 447 (596)
Q Consensus 368 ~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ 447 (596)
+++++|+|.+++++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+++...+|++.+ +..+++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--~ 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--M 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE--S
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec--C
Confidence 3678899999999999999999999999999999999999999999999999997555666644 68999999999 2
Q ss_pred hhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHH
Q 007606 448 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 527 (596)
Q Consensus 448 ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~ 527 (596)
++.++++|+++|+++.|++++|.++++++ |.+.......+...+....
T Consensus 77 --------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~ 124 (222)
T 1ft9_A 77 --------------HSGCLVEATERTEVRFADIRTFEQKLQTC------------------PSMAWGLIAILGRALTSCM 124 (222)
T ss_dssp --------------CSSCEEEESSCEEEEEECHHHHHHHHHHC------------------GGGHHHHHHHHHHHHHHHH
T ss_pred --------------CCCEEEEEccceEEEEEeHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999 6666666666777778888
Q ss_pred HHHhhhhHHHHHhhhhhhhhhcC-----------CCCCchhhHHHHhHHHH------HHHHHhhhcCCC--CCCc-ccc
Q 007606 528 KRKLEGSLYAKENILQDQKAEAG-----------GKPSKFGTAIYATQFFT------YVRRSVKRNGGL--PGGR-VNI 586 (596)
Q Consensus 528 ~r~~~~~~~~a~erY~~~~~~~p-----------~~~~r~~~~~iAs~~~~------~~~~~~~~~~~~--~~~~-~~~ 586 (596)
++...+...++++|+..++.+.+ .+..++++++||+.+.. .+++-+++.|.. .+++ +.|
T Consensus 125 ~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~~i 203 (222)
T 1ft9_A 125 RTIEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTI 203 (222)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEEC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCceEEE
Confidence 89999999999999999888766 35678999999987642 355667777764 3444 344
No 17
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.75 E-value=2e-17 Score=161.25 Aligned_cols=185 Identities=10% Similarity=0.118 Sum_probs=138.3
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeee
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 444 (596)
...+++.++|.++++++++.++..++.+.|+||++|+++|++++.+|+|.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 457888999999999999999999999999999999999999999999999999999754 455543 68999999999
Q ss_pred chhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHc-----cchhhhhhccchhhhcccccchhHHHHHH
Q 007606 445 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY-----WQHRNHNMQPLDIFKFYSQEWRTSKACVI 519 (596)
Q Consensus 445 e~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~-----P~~~l~~~~l~~~~r~~s~~~~~~~~~~~ 519 (596)
+..++. ..+++.++++|.++|+++.|++++|.++++++ | .-+..+. ..+
T Consensus 88 ~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p-----------------~~~~~~~-~~l 141 (230)
T 3iwz_A 88 EMGLFI--------ESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAP-----------------RILYAIG-VQL 141 (230)
T ss_dssp CGGGTS--------CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHH-----------------HHHHHHH-HHH
T ss_pred ehhhhc--------CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCc-----------------HHHHHHH-HHH
Confidence 998651 22256889999999999999999999999998 5 2222222 333
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhhhhhhhhcCC----------CCCchhhHHHHhHHH------HHHHHHhhhcCC
Q 007606 520 QAAWCRYKKRKLEGSLYAKENILQDQKAEAGG----------KPSKFGTAIYATQFF------TYVRRSVKRNGG 578 (596)
Q Consensus 520 e~~~~~~~~r~~~~~~~~a~erY~~~~~~~p~----------~~~r~~~~~iAs~~~------~~~~~~~~~~~~ 578 (596)
...+....++.......++++|+..++.+..+ +..++++++||+.+. ..+++-+++.|.
T Consensus 142 ~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~ 216 (230)
T 3iwz_A 142 SKRLLDTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGL 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCC
Confidence 44456677788889999999999887765422 345789999998775 334566666775
No 18
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.74 E-value=5.7e-17 Score=155.72 Aligned_cols=178 Identities=10% Similarity=0.087 Sum_probs=140.3
Q ss_pred ccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhcc
Q 007606 373 PMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSA 451 (596)
Q Consensus 373 ~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~ 451 (596)
++++.+++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++.+ +..+++|++||+.+++.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~~- 78 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFE- 78 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTTS-
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHhc-
Confidence 35567999999999999999999999999999999999999999999999764 455543 68999999999998651
Q ss_pred CCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 007606 452 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKL 531 (596)
Q Consensus 452 ~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~ 531 (596)
..+++.++++|+++|+++.+++++|.++++++ |.+.......+........++..
T Consensus 79 -------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~~~ 133 (210)
T 3ryp_A 79 -------EGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMRLSAQMARRLQVTSEKVG 133 (210)
T ss_dssp -------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCceEEEEECCcEEEEEEcHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 22256889999999999999999999999999 55555545555566677778888
Q ss_pred hhhHHHHHhhhhhhhhhcCC----------CCCchhhHHHHhHHHH------HHHHHhhhcCC
Q 007606 532 EGSLYAKENILQDQKAEAGG----------KPSKFGTAIYATQFFT------YVRRSVKRNGG 578 (596)
Q Consensus 532 ~~~~~~a~erY~~~~~~~p~----------~~~r~~~~~iAs~~~~------~~~~~~~~~~~ 578 (596)
.....++++|+..++.+..+ +..++++++||+.+.. .+++-+++.|.
T Consensus 134 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~ 196 (210)
T 3ryp_A 134 NLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNL 196 (210)
T ss_dssp HHHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHCCc
Confidence 88999999999877654322 3347899999987642 34455666664
No 19
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.73 E-value=5.8e-17 Score=155.32 Aligned_cols=181 Identities=16% Similarity=0.179 Sum_probs=140.8
Q ss_pred CcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCCC
Q 007606 378 MGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDP 456 (596)
Q Consensus 378 ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s 456 (596)
+++++++.++..++.+.|+||++|+++|++++.+|||.+|.|+++..+ +|++. ++..+++|++||+.+++.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G~~~~~~------ 72 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREM--IIGYLNSGDFFGELGLFE------ 72 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEESCTTTCC------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCCcccHHHhc------
Confidence 589999999999999999999999999999999999999999999764 45553 369999999999998651
Q ss_pred CCCCC---CcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhh
Q 007606 457 LSNIP---HSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEG 533 (596)
Q Consensus 457 ~~~~~---~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~ 533 (596)
..+ ++.++++|+++|+++.|++++|.++++++ |.+.......+...+....++...+
T Consensus 73 --~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~~~~~~~~~~~l 132 (207)
T 2oz6_A 73 --KEGSEQERSAWVRAKVECEVAEISYAKFRELSQQD------------------SEILYTLGSQMADRLRKTTRKVGDL 132 (207)
T ss_dssp -------CBCCSEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 46889999999999999999999999999 4554433344455556677788888
Q ss_pred hHHHHHhhhhhhhh---hcCC-------CCCchhhHHHHhHHH------HHHHHHhhhcCCCC--CCcccc
Q 007606 534 SLYAKENILQDQKA---EAGG-------KPSKFGTAIYATQFF------TYVRRSVKRNGGLP--GGRVNI 586 (596)
Q Consensus 534 ~~~~a~erY~~~~~---~~p~-------~~~r~~~~~iAs~~~------~~~~~~~~~~~~~~--~~~~~~ 586 (596)
...++++|+..++. +.|+ +..++++++||+.+. ..+++-+++.|... +++|.|
T Consensus 133 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 203 (207)
T 2oz6_A 133 AFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVV 203 (207)
T ss_dssp HHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 89999999977663 3222 556899999998664 23456666777532 344544
No 20
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.73 E-value=1.8e-17 Score=160.07 Aligned_cols=180 Identities=12% Similarity=0.110 Sum_probs=106.1
Q ss_pred CccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhc
Q 007606 372 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATS 450 (596)
Q Consensus 372 ~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~ 450 (596)
-|.|.+.++.+.+.+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++.+ +..+++|++||+..++.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTTS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHhc
Confidence 367788899999999999999999999999999999999999999999999764 455543 68999999999998651
Q ss_pred cCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccch-hHHHHHHHHHHHHHHHH
Q 007606 451 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWR-TSKACVIQAAWCRYKKR 529 (596)
Q Consensus 451 ~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~-~~~~~~~e~~~~~~~~r 529 (596)
..+++..+++|+++|+++.|++++|.++++++ |.+. .+.+.+.++ .....++
T Consensus 82 --------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~-~~~~~~~ 134 (213)
T 1o5l_A 82 --------SEPRFPVNVVAGENSKILSIPKEVFLDLLMKD------------------RELLLFFLKDVSEH-FRVVSEK 134 (213)
T ss_dssp --------SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHH-HHHHHHH
T ss_pred --------CCCCceEEEEEccceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHH-HHHHHHH
Confidence 12256889999999999999999999999999 4543 444444444 4566788
Q ss_pred HhhhhHHHHHhhhhhhhhhcC----CCCCchhhHHHHhHHHHH------HHHHhhhcCCCC
Q 007606 530 KLEGSLYAKENILQDQKAEAG----GKPSKFGTAIYATQFFTY------VRRSVKRNGGLP 580 (596)
Q Consensus 530 ~~~~~~~~a~erY~~~~~~~p----~~~~r~~~~~iAs~~~~~------~~~~~~~~~~~~ 580 (596)
...+...++++|+..++.+.+ .+..++++++||+.+... +++-+++.|...
T Consensus 135 ~~~l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~ 195 (213)
T 1o5l_A 135 LFFLTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIE 195 (213)
T ss_dssp HHHHHCC------------------------------------------------------
T ss_pred HHHHhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE
Confidence 888999999999999998888 677899999999887543 445556666543
No 21
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.71 E-value=6.5e-17 Score=153.00 Aligned_cols=135 Identities=14% Similarity=0.203 Sum_probs=116.5
Q ss_pred HHHHHhcchhhh----HHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEE
Q 007606 345 VENLLNNLPVNL----NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLL 420 (596)
Q Consensus 345 e~~ll~~Lp~~L----r~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~ 420 (596)
+..+.+.++|++ +.+...+...++++++|+|.+++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 456666666655 3445566678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHc
Q 007606 421 TTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 421 v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~ 490 (596)
++..+ +|++.. +..+++|++||+.+++. ..++.++++|.++|+++.|++++|.++++++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l~---------~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~ 152 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMID---------GMPRSASCVASLPTDFAVLSRDALYQLLANM 152 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHHH---------CCCCSSEEEEEEEEEEEEEEHHHHHHHHHHC
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHhC---------CCCeeEEEEECCCeEEEEEcHHHHHHHHHHC
Confidence 99864 555543 68999999999998762 1256889999999999999999999999999
No 22
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.71 E-value=8.6e-17 Score=144.09 Aligned_cols=126 Identities=21% Similarity=0.347 Sum_probs=113.4
Q ss_pred cchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeee
Q 007606 351 NLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNT 430 (596)
Q Consensus 351 ~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~ 430 (596)
++|..+|.+...+...++++++++|.++++++++.++..++.+.|++|++|+++|+.++.+|||.+|.|++.. +|.
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999965 333
Q ss_pred eEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 431 SVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 431 ~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
.+..+.+|++||+.+++.. .++.++++|.++|+++.|++++|.++++++|
T Consensus 83 --~~~~~~~G~~fGe~~~l~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 132 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTG 132 (139)
T ss_dssp --EEEEECTTCEESCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred --EEEEeCCCCEeccHHHHCC---------CCcceEEEECcceEEEEEcHHHHHHHHhhCh
Confidence 2589999999999987621 2568899999999999999999999999994
No 23
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.71 E-value=7.2e-17 Score=145.83 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=115.0
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeee
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 444 (596)
.++++++++|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++. .+..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGREN--MLAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEE--EEEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEE--EEEEcCCcCEec
Confidence 457889999999999999999999999999999999999999999999999999999765 35543 368999999999
Q ss_pred chhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHH
Q 007606 445 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 524 (596)
Q Consensus 445 e~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~ 524 (596)
+.+++. ..++..+++|.++|+++.|++++|.++++++ |.+.......+.+.+.
T Consensus 82 ~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l~ 134 (149)
T 2pqq_A 82 ELSLFD---------PGPRTATGTALTEVKLLALGHGDLQPWLNVR------------------PEVATALLRAVARRLR 134 (149)
T ss_dssp GGGGTS---------CEECSSEEEESSCEEEEEEEGGGHHHHHHHC------------------THHHHHHHHHHHHHHH
T ss_pred hHHhcC---------CCCcceEEEEccceEEEEEeHHHHHHHHHhC------------------cHHHHHHHHHHHHHHH
Confidence 987651 1256889999999999999999999999999 4544444444455555
Q ss_pred HHHHHHhhhhHH
Q 007606 525 RYKKRKLEGSLY 536 (596)
Q Consensus 525 ~~~~r~~~~~~~ 536 (596)
...+|+.++.+.
T Consensus 135 ~~~~~~~~l~~~ 146 (149)
T 2pqq_A 135 KTNDAMSDLVFS 146 (149)
T ss_dssp HHHTTC--CCCC
T ss_pred HHHHHHHHHhcc
Confidence 555555544443
No 24
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.70 E-value=1.5e-16 Score=146.28 Aligned_cols=131 Identities=11% Similarity=0.147 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEE
Q 007606 356 LNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKK 435 (596)
Q Consensus 356 Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~ 435 (596)
-+.+.......++++++++|.+++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++...+|++.. +.
T Consensus 27 ~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~ 104 (161)
T 3idb_B 27 PKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VG 104 (161)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EE
T ss_pred CCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EE
Confidence 3445555667789999999999999999999999999999999999999999999999999999999866666644 68
Q ss_pred ecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhc
Q 007606 436 YLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQ 499 (596)
Q Consensus 436 ~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~ 499 (596)
.+++|++||+.+++. ..++.++++|.++|+++.|++++|.++++++ |.+..+.
T Consensus 105 ~~~~G~~fGe~~~~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~--p~~~~~~ 157 (161)
T 3idb_B 105 NYDNRGSFGELALMY---------NTPRAATITATSPGALWGLDRVTFRRIIVKN--NAKKRKM 157 (161)
T ss_dssp EEESCCEECGGGGTC---------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHH--HHTSCCC
T ss_pred EcCCCCEechHHHHc---------CCCcccEEEECCCeEEEEEeHHHHHHHHHHC--HHHHHHH
Confidence 999999999998752 2257889999999999999999999999999 4444433
No 25
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.70 E-value=3.3e-16 Score=156.13 Aligned_cols=176 Identities=11% Similarity=0.117 Sum_probs=138.7
Q ss_pred cCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCC
Q 007606 376 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDP 454 (596)
Q Consensus 376 ~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~ 454 (596)
..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++. ++..+++|++||+.+++.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~--~~~~~~~G~~~Ge~~~~~---- 128 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM--ILSYLNQGDFIGELGLFE---- 128 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEE--EEEEEETTCEESCTTTTS----
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEEeehHHhC----
Confidence 46899999999999999999999999999999999999999999999864 45553 369999999999998651
Q ss_pred CCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 007606 455 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGS 534 (596)
Q Consensus 455 ~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~ 534 (596)
..+++.++++|+++|+++.|++++|.++++++ |.+.......+...+....++...+.
T Consensus 129 ----~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~------------------p~l~~~l~~~l~~~l~~~~~~~~~l~ 186 (260)
T 3kcc_A 129 ----EGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMRLSAQMARRLQVTSEKVGNLA 186 (260)
T ss_dssp ----TTCBCCSEEEESSCEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCceEEEECCCeEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22256889999999999999999999999999 55555444555556677788888999
Q ss_pred HHHHHhhhhhhhhh---cC-------CCCCchhhHHHHhHHH------HHHHHHhhhcCCC
Q 007606 535 LYAKENILQDQKAE---AG-------GKPSKFGTAIYATQFF------TYVRRSVKRNGGL 579 (596)
Q Consensus 535 ~~~a~erY~~~~~~---~p-------~~~~r~~~~~iAs~~~------~~~~~~~~~~~~~ 579 (596)
..++++|+..++.+ .+ .+..+++++.||+.+. ..+++-+++.|..
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI 247 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLI 247 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 99999999776543 22 2335889999998764 3345666667753
No 26
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.69 E-value=1.5e-16 Score=157.41 Aligned_cols=186 Identities=11% Similarity=0.067 Sum_probs=148.0
Q ss_pred hhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechh
Q 007606 369 LKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEEL 447 (596)
Q Consensus 369 l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ 447 (596)
+.....+..+++++++.+...++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||+
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC--
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee--
Confidence 344444588999999999999999999999999999999999999999999999864 455543 699999999999
Q ss_pred hhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHH
Q 007606 448 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 527 (596)
Q Consensus 448 ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~ 527 (596)
++ ... +.++++|+++|+++.|++++|.+++.++ |.+.......+.+.+....
T Consensus 87 ~l---------~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~l~~~~ 138 (250)
T 3e6c_C 87 LY---------PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTD------------------EDMIFEIFKNYLTKVAYYA 138 (250)
T ss_dssp CS---------CCS-CCEEEEESSSEEEEEECHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHH
T ss_pred ec---------CCC-CceEEEEcccEEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHH
Confidence 33 112 5789999999999999999999999999 5555555556666677788
Q ss_pred HHHhhhhHHHHHhhhhhhhh----hcC-------CCCCchhhHHHHhHHH------HHHHHHhhhcCCC--CCCcccc
Q 007606 528 KRKLEGSLYAKENILQDQKA----EAG-------GKPSKFGTAIYATQFF------TYVRRSVKRNGGL--PGGRVNI 586 (596)
Q Consensus 528 ~r~~~~~~~~a~erY~~~~~----~~p-------~~~~r~~~~~iAs~~~------~~~~~~~~~~~~~--~~~~~~~ 586 (596)
++.......++++|+..++. .+| .+..+++++.||+.+. ..+++-+++.|.. .+++|.|
T Consensus 139 ~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i 216 (250)
T 3e6c_C 139 RQVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIV 216 (250)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEE
Confidence 88889999999999977663 344 3567899999998873 3345666777764 3444544
No 27
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.68 E-value=1.2e-16 Score=143.30 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=102.8
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeee-EEEEecCCCCee
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTS-VFKKYLSTGDFW 443 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~-~~~~~l~~G~~f 443 (596)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++.. .++..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 356889999999999999999999999999999999999999999999999999998754 333321 015889999999
Q ss_pred echhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccch
Q 007606 444 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLD 502 (596)
Q Consensus 444 Ge~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~ 502 (596)
|+.+++ ...++.++++|.++|+++.|++++|.++++++ |.+....++.
T Consensus 85 G~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~--p~~~~~l~~~ 132 (142)
T 3mdp_A 85 GVSSLI---------KPYHYTSSARATKPVRVVDINGARLREMSENN--QALGQVLMNN 132 (142)
T ss_dssp CGGGSS---------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHC--HHHHHHHHHH
T ss_pred chHHHc---------CCCCceEEEEECCcEEEEEEeHHHHHHHHHHC--hHHHHHHHHH
Confidence 998865 12356889999999999999999999999999 4444443333
No 28
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.67 E-value=1.2e-16 Score=142.68 Aligned_cols=125 Identities=41% Similarity=0.731 Sum_probs=101.9
Q ss_pred HHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeech
Q 007606 367 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 446 (596)
Q Consensus 367 ~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~ 446 (596)
++++++++|..+++++++.++..++.+.|++|++|+++||.++.+|||.+|.|+++..++|++.++.+..+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 35788999999999999999999999999999999999999999999999999976555566544222389999999999
Q ss_pred hhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 447 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 447 ~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
++++.++..+....+++.++++|+++|+++.|++++|.++++++|
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p 130 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR 130 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCH
Confidence 851111222111122457899999999999999999999999993
No 29
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.63 E-value=1.8e-16 Score=154.32 Aligned_cols=200 Identities=12% Similarity=0.117 Sum_probs=117.0
Q ss_pred CchhHHHHHHHHHHHhhhcceeeeEEEEcCCccceeccccchhhHHHHHhhhhheeee---ee--CCcccccchhhhhhh
Q 007606 50 GPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII---YS--SSTPHKHSRANAKKC 124 (596)
Q Consensus 50 s~~Wd~~~~~~~~~~~~~~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~---f~--~~~~v~d~~~Ia~~~ 124 (596)
++.||.+++++++++++..++.... +.+......+..+|.++|++|.+ .+ ... .++
T Consensus 7 ~~~f~~~i~~lil~~~~~~~~~~~~----------~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------~~~-- 67 (223)
T 1orq_C 7 HPLVELGVSYAALLSVIVVVVECTM----------QLSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------DPA-- 67 (223)
T ss_dssp SHHHHTHHHHHHHHHHHHHHHHHHH----------HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS-------CHH--
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhc----------ccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc-------cHH--
Confidence 3448999999999888877754221 11223455788899999999998 22 221 246
Q ss_pred hhhhhhHHHHhhcCChhhhhHh-hh---hccccccCcchHHHHHHHHHHHH-----HHHHHHHHHHhhcccccccccccc
Q 007606 125 FYLNSFLKDLLSCLPIPQLVTS-II---IITSKGSGFFPAMVFGALWYFMA-----IERETECWKKACREHTECYQNSFH 195 (596)
Q Consensus 125 ~Ylk~F~~Dlls~lP~~~l~~~-~~---~~~lr~~r~l~~h~~~~~~~l~~-----i~r~~~~~~~~~~~~~~c~~~~~~ 195 (596)
+|++++++|+++++|++..... .. .+.+|..|++| +..+.++++ ...+....+.... ..+. .+.
T Consensus 68 ~y~~~~iiDllailP~~~~~~~~~~~~~~~~lr~lRllR---llR~~r~~~~~~~~~~~l~~~~~~~~l--~~~~--~~~ 140 (223)
T 1orq_C 68 GYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLR---FLRILLIISRGSKFLSAIADAADKIRF--YHLF--GAV 140 (223)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHH---HHHHHHHHHSCSSHHHHHHHHHHHHHH--HHHH--HHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHH
Confidence 9999989999999999865531 11 11222222222 011111111 0000000000000 0000 000
Q ss_pred ccccccccccccccCcccccCCCccccchhHHHHhhccccchhhHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHH
Q 007606 196 CYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASF 275 (596)
Q Consensus 196 ~~~~~~~~~Wi~~~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~ 275 (596)
+ ..++..+|..+.-+.+ +.++....|..|+||+++||||+||||++|.|..+++++++
T Consensus 141 ~------~~~~~~~~~~~~~e~~----------------~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~ 198 (223)
T 1orq_C 141 M------LTVLYGAFAIYIVEYP----------------DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIA 198 (223)
T ss_dssp H------HHHHHHHHHHHHTTSS----------------STTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHhC----------------CcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHH
Confidence 0 0000001110000000 01223347999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007606 276 IIIASLLLLLLVLGNLTIYLQS 297 (596)
Q Consensus 276 ~~l~G~~~fa~iig~i~~i~~~ 297 (596)
.|++|.+++|+.+|.+++.+++
T Consensus 199 ~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 199 VMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998865
No 30
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.63 E-value=4.1e-15 Score=146.53 Aligned_cols=180 Identities=10% Similarity=0.071 Sum_probs=138.8
Q ss_pred HHHHHHHHhhce---EEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCC
Q 007606 380 KSILSEMCKCLK---PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPD 455 (596)
Q Consensus 380 ~~~l~~l~~~~~---~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~ 455 (596)
+++++.+..... .+.|+||++|+++|+.++.+|||.+|.|+++..+ +|++.+ +.++++|++||+.+++.. .+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~~~-~~- 105 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLLTG-NK- 105 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHHSS-CC-
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHhCC-CC-
Confidence 677888888888 9999999999999999999999999999999764 455533 699999999999987621 11
Q ss_pred CCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhhH
Q 007606 456 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSL 535 (596)
Q Consensus 456 s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~ 535 (596)
.++.++++|+++|+++.|++++|.++++++ |.+.......+...+....++......
T Consensus 106 -----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~l~~~~~~~~~l~~ 162 (243)
T 3la7_A 106 -----SDRFYHAVAFTPVELLSAPIEQVEQALKEN------------------PELSMLMLRGLSSRILQTEMMIETLAH 162 (243)
T ss_dssp -----SBCCEEEEESSSEEEEEEEHHHHHHHHTTC------------------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----CcceEEEEEccceEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 023579999999999999999999999999 455444445555556667778888888
Q ss_pred HHHHhhhhhhhhhc-----------CCCCCchhhHHHHhHHH------HHHHHHhhhcCCC--CCCcccc
Q 007606 536 YAKENILQDQKAEA-----------GGKPSKFGTAIYATQFF------TYVRRSVKRNGGL--PGGRVNI 586 (596)
Q Consensus 536 ~~a~erY~~~~~~~-----------p~~~~r~~~~~iAs~~~------~~~~~~~~~~~~~--~~~~~~~ 586 (596)
.++++|+..++.+. +.+..+++++.||+.+. ..+++-+++.|.. .+++|.|
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 232 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITV 232 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 99999998766542 34678999999998764 2344566666653 3344544
No 31
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.62 E-value=4.7e-15 Score=135.30 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=102.8
Q ss_pred HHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCC
Q 007606 362 SELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGD 441 (596)
Q Consensus 362 ~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~ 441 (596)
.....++++++++|.+++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++. +++ .+..+++|+
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~----~~~~~~~G~ 106 (154)
T 3pna_A 33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE----WATSVGEGG 106 (154)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE----EEEEECTTC
T ss_pred HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE----EEEEecCCC
Confidence 34456789999999999999999999999999999999999999999999999999999997 333 257899999
Q ss_pred eeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 442 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 442 ~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
+||+.+++. ..++.++++|+++|+++.|++++|.++++++|
T Consensus 107 ~fGe~~~~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~ 147 (154)
T 3pna_A 107 SFGELALIY---------GTPRAATVKAKTNVKLWGIDRDSYRRILMGST 147 (154)
T ss_dssp EECCHHHHH---------CCCCSSEEEESSCEEEEEEEHHHHHHHTHHHH
T ss_pred EeeehHhhc---------CCCcceEEEECcceEEEEEeHHHHHHHHHhCh
Confidence 999998762 12568899999999999999999999999993
No 32
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.62 E-value=4.8e-15 Score=134.61 Aligned_cols=116 Identities=11% Similarity=0.209 Sum_probs=100.5
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeee
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 444 (596)
.++++++++|..+++++++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 568999999999999999999999999999999999999999999999999999999754 344433 68999999999
Q ss_pred chhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 445 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 445 e~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
+.+++. ..+++.++++|.++|+++.|++++|.++++++|
T Consensus 89 ~~~~~~--------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 127 (154)
T 2z69_A 89 EAMMFM--------DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT 127 (154)
T ss_dssp GGGGGS--------SCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCH
T ss_pred cHhhcc--------CCCCCceEEEEccceEEEEECHHHHHHHHHHCh
Confidence 998751 112268899999999999999999999999993
No 33
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.61 E-value=1.2e-14 Score=142.73 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=137.6
Q ss_pred cCCcHHHHHHHHh--hceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccC
Q 007606 376 QMMGKSILSEMCK--CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 452 (596)
Q Consensus 376 ~~ls~~~l~~l~~--~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~ 452 (596)
++++++++..+.. .++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+ +|++||+.+++.
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~~-- 76 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFID-- 76 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCTT--
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhhc--
Confidence 3688999999885 5999999999999999999999999999999999764 455543 5777 999999998651
Q ss_pred CCCCCCCCCC-cccEEEEe-ceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHH
Q 007606 453 DPDPLSNIPH-SNCALISV-TNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 530 (596)
Q Consensus 453 ~~~s~~~~~~-s~~si~A~-e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~ 530 (596)
..++ +..+++|+ ++|+++.|++++|.++++++ |.+.......+...+....+++
T Consensus 77 ------~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~~ 132 (238)
T 2bgc_A 77 ------TETSVGYYNLEVISEQATAYVIKINELKELLSKN------------------LTHFFYVFQTLQKQVSYSLAKF 132 (238)
T ss_dssp ------TCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 25678888 59999999999999999999 4555444455556666777888
Q ss_pred hhhhHHHHHhhhhhhhhh--------cC---CCCC-chhhHHHHhHHH-------HHHHHHhhhcCCCC--CCcccc
Q 007606 531 LEGSLYAKENILQDQKAE--------AG---GKPS-KFGTAIYATQFF-------TYVRRSVKRNGGLP--GGRVNI 586 (596)
Q Consensus 531 ~~~~~~~a~erY~~~~~~--------~p---~~~~-r~~~~~iAs~~~-------~~~~~~~~~~~~~~--~~~~~~ 586 (596)
..+...++++|+..++.+ .| .+.. ++++++||+.+. ..+++-+++.|... +++|.|
T Consensus 133 ~~~~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I 209 (238)
T 2bgc_A 133 NDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYV 209 (238)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 889999999999887753 23 2455 899999997542 23455666777643 444555
No 34
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.61 E-value=4.8e-15 Score=132.17 Aligned_cols=110 Identities=24% Similarity=0.431 Sum_probs=99.2
Q ss_pred HHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 365 CLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 365 ~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
..++++++++|.+++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ + ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3568999999999999999999999999999999999999999999999999999998754 1 4689999999
Q ss_pred chhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 445 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 445 e~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
+.+++.. .++..+++|.++|+++.|++++|.++++++|
T Consensus 81 ~~~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 118 (138)
T 1vp6_A 81 EMALISG---------EPRSATVSAATTVSLLSLHSADFQMLCSSSP 118 (138)
T ss_dssp HHHHHHC---------CCCSSCEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred ehHhccC---------CCceeEEEECCCEEEEEECHHHHHHHHHHCH
Confidence 9987621 2467899999999999999999999999993
No 35
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.59 E-value=1.7e-14 Score=146.56 Aligned_cols=130 Identities=20% Similarity=0.308 Sum_probs=116.1
Q ss_pred HHHhcchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCC
Q 007606 347 NLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG 426 (596)
Q Consensus 347 ~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~ 426 (596)
.-..++|+..|.+...+...++++++++|.+++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999965 3
Q ss_pred CeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 427 GRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 427 ~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
|. .+..+.+|++|||.+++. ..++.++++|.++|+++.|++++|.+++..+|
T Consensus 97 g~----~~~~~~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~ 148 (299)
T 3shr_A 97 GV----KLCTMGPGKVFGELAILY---------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTG 148 (299)
T ss_dssp TE----EEEEECTTCEESCSGGGT---------TTBCCSEEEESSCEEEEEECHHHHHHHHHHHH
T ss_pred CE----EEEEeCCCCeeeHhHHhc---------CCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhH
Confidence 32 258899999999998762 23678999999999999999999999999994
No 36
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=134.29 Aligned_cols=124 Identities=18% Similarity=0.255 Sum_probs=104.8
Q ss_pred hhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEec-CCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeee
Q 007606 353 PVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYV-QECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTS 431 (596)
Q Consensus 353 p~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~-kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~ 431 (596)
||+.|.+.......++++++++|..+++++++.++..++.+.++ +|++|+++|+.++.+|||.+|.|+++.. +|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHP-DGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECS-SSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcC-CCcE--
Confidence 44555555555566789999999999999999999999999999 9999999999999999999999999963 3443
Q ss_pred EEEEecCCCCeeechhhhccCCCCCCCCCCCcccEE-EEeceEEEEEEcHHHHHHHHHHcc
Q 007606 432 VFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCAL-ISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 432 ~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si-~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
..+.+|++||+.+++ ...++..++ +|.++|+++.|++++|.+++++++
T Consensus 79 ---~~l~~G~~fG~~~~~---------~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---------DKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSSS---------CCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHhc---------CCCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 458899999998865 112456688 999999999999999999998883
No 37
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.57 E-value=1.7e-14 Score=156.05 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=120.6
Q ss_pred chhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeee
Q 007606 352 LPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNT 430 (596)
Q Consensus 352 Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~ 430 (596)
.|+..|.+.......+.++++++|.+++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++..+ +|++.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 57888888888888999999999999999999999999999999999999999999999999999999999864 33211
Q ss_pred eEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhh
Q 007606 431 SVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFK 505 (596)
Q Consensus 431 ~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r 505 (596)
...+..+++|++||+.+ +. ..++.++++|.++|+++.|++++|.++++++ |.+....++...+
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~---------~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~--p~~~~~l~~~~~~ 169 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LD---------NTPRHATIVTRESSELLRIEQEDFKALWEKY--RQYMAGLLAPPYG 169 (469)
T ss_dssp CEEEEEECTTCEECGGG-GG---------TCBCSSEEEESSSEEEEEEEHHHHHHHHHHH--GGGTTTTSCTTTS
T ss_pred ceEEEEccCCCCcchhh-hC---------CCCccceEEEccceeEEEEcHHHHHHHHHhC--HHHHHHHHHHHHH
Confidence 12368999999999987 52 1256889999999999999999999999999 5655555544443
No 38
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.54 E-value=7.7e-14 Score=144.01 Aligned_cols=113 Identities=12% Similarity=0.206 Sum_probs=101.6
Q ss_pred HHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 366 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 366 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
.++++++|+|.+++++++..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+++++. .+..+.+|++||+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~G~~fGe 89 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA--IIARALPGMIVGE 89 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE--EEEEECTTCEESH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE--EEEEecCCCEeeH
Confidence 46889999999999999999999999999999999999999999999999999999986543333 3689999999999
Q ss_pred hhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHc
Q 007606 446 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 446 ~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~ 490 (596)
.+++. ..++.++++|+++|+++.|++++|.+++ ++
T Consensus 90 ~~l~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~ 124 (333)
T 4ava_A 90 IALLR---------DSPRSATVTTIEPLTGWTGGRGAFATMV-HI 124 (333)
T ss_dssp HHHHH---------TCBCSSEEEESSCEEEEEECHHHHHHHH-HS
T ss_pred HHhcC---------CCCceEEEEEecCEEEEEEcHHHHHHHH-hC
Confidence 98762 1257889999999999999999999999 89
No 39
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.53 E-value=9.4e-14 Score=141.03 Aligned_cols=118 Identities=24% Similarity=0.404 Sum_probs=104.7
Q ss_pred HHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC--CCeeeeEEEEecCCC
Q 007606 363 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN--GGRNTSVFKKYLSTG 440 (596)
Q Consensus 363 ~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~--~~~~~~~~~~~l~~G 440 (596)
.....+++++++|..++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++..+ +|++. .+..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~--~~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPV--FLRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCE--EEEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcce--EEEEcCCC
Confidence 345678889999999999999999999999999999999999999999999999999999865 45443 36899999
Q ss_pred CeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 441 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 441 ~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
++|||.+++. ..++.++++|.++|+++.|++++|.++++.+|
T Consensus 231 ~~fGe~~ll~---------~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p 272 (299)
T 3shr_A 231 DWFGEKALQG---------EDVRTANVIAAEAVTCLVIDRDSFKHLIGGLD 272 (299)
T ss_dssp CEECGGGGSS---------SEECSSEEEESSSEEEEEEEHHHHHHHHTTCC
T ss_pred CEeChHHHhC---------CCCcceEEEECCCEEEEEEeHHHHHHHHccHH
Confidence 9999998751 23578999999999999999999999999993
No 40
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.52 E-value=9.7e-14 Score=147.79 Aligned_cols=124 Identities=12% Similarity=0.152 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEe
Q 007606 357 NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKY 436 (596)
Q Consensus 357 r~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~ 436 (596)
+.+-......+.++++++|.+++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++...+|++.. +..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEE
Confidence 445556667889999999999999999999999999999999999999999999999999999999866666543 689
Q ss_pred cCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 437 LSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 437 l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
+.+|++||+.+++. ..++.++++|.++|+++.|++++|.+++..+|
T Consensus 213 l~~G~~fGe~all~---------~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~ 258 (416)
T 3tnp_B 213 YDNRGSFGELALMY---------NTPKAATITATSPGALWGLDRVTFRRIIVKNN 258 (416)
T ss_dssp EESCCEECGGGGTS---------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred ecCCCEEeeHHHhc---------CCCcccEEEEccCeEEEEEeehhhhhhhhcch
Confidence 99999999998762 23678999999999999999999999999994
No 41
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=2.7e-13 Score=136.93 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=106.5
Q ss_pred HHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCe
Q 007606 364 LCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDF 442 (596)
Q Consensus 364 ~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~ 442 (596)
....+++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++... ++++. ..+..+++|++
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~-~~~~~l~~G~~ 232 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEF-VEVGRLGPSDY 232 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCE-EEEEEECTTCE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCcc-EEEEEeCCCCE
Confidence 34567788999999999999999999999999999999999999999999999999998754 23221 23689999999
Q ss_pred eechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccch
Q 007606 443 WGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLD 502 (596)
Q Consensus 443 fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~ 502 (596)
|||.+++. ..++.++++|.++|+++.|++++|.+++..+ |.+..+.++.
T Consensus 233 fGe~~ll~---------~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~--p~~~~~~~~~ 281 (291)
T 2qcs_B 233 FGEIALLM---------NRPKAATVVARGPLKCVKLDRPRFERVLGPC--SDILKRNIQQ 281 (291)
T ss_dssp ECSGGGTC---------CCCCSSEEEEEEEEEEEEEEHHHHHHHHCCH--HHHHTTSHHH
T ss_pred ecHHHHcC---------CCCcceEEEECCcEEEEEEcHHHHHHHhccH--HHHHHHHHHH
Confidence 99998751 2257899999999999999999999999999 5544444433
No 42
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.48 E-value=2.3e-14 Score=127.86 Aligned_cols=92 Identities=10% Similarity=0.147 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCC
Q 007606 243 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLS 322 (596)
Q Consensus 243 Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~ 322 (596)
|..|+||+++|+|||||||++|.|..+++++++++++|++++|+++|.+++.+........+.++.....+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 88999999999999999999999999999999999999999999999999998776655544333322233334445666
Q ss_pred HHHHHHHHHHHH
Q 007606 323 QSLQQRVRNHQQ 334 (596)
Q Consensus 323 ~~L~~rv~~y~~ 334 (596)
++....++++.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 43
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.9e-13 Score=134.24 Aligned_cols=114 Identities=14% Similarity=0.265 Sum_probs=102.5
Q ss_pred HHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCee
Q 007606 364 LCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 443 (596)
Q Consensus 364 ~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 443 (596)
+...++++++.|..++++++..++..++.+.|++|+.|+++|+.++.+|+|.+|.++++..+++ .+..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-----~~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-----VINKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-----EEEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-----eEEEcCCCCcc
Confidence 3456788899999999999999999999999999999999999999999999999999986554 25899999999
Q ss_pred echhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 444 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 444 Ge~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
||.+++. ..++.++++|.++|+++.|++++|.+++..+|
T Consensus 197 Ge~~~~~---------~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~ 235 (246)
T 3of1_A 197 GEVALLN---------DLPRQATVTATKRTKVATLGKSGFQRLLGPAV 235 (246)
T ss_dssp CHHHHHH---------TCBCSSEEEESSCEEEEEEEHHHHHHHCTTHH
T ss_pred cHHHHhC---------CCCcccEEEECCCEEEEEEeHHHHHHHhccHH
Confidence 9999762 22578999999999999999999999999994
No 44
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.6e-13 Score=134.73 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=100.9
Q ss_pred HHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 365 CLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 365 ~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
..++++++++|.++++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. ++. +..+.+|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~--~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVN--DNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEEST--TSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEEC--CEE----EEecCCCCeee
Confidence 467899999999999999999999999999999999999999999999999999999862 322 47899999999
Q ss_pred chhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 445 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 445 e~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
+.+++. ..++.++++|.++|+++.|++++|.+++.++|
T Consensus 79 e~~l~~---------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 116 (246)
T 3of1_A 79 ELALMY---------NSPRAATVVATSDCLLWALDRLTFRKILLGSS 116 (246)
T ss_dssp HHHHHH---------TCCCSSEEEESSCEEEEEEEHHHHHHTTTTTT
T ss_pred hhHHhc---------CCCCCcEEEECCCeEEEEEEhHHHHHHHHHhH
Confidence 998762 12578999999999999999999999999994
No 45
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.47 E-value=5.4e-13 Score=134.69 Aligned_cols=120 Identities=17% Similarity=0.241 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEe
Q 007606 357 NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKY 436 (596)
Q Consensus 357 r~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~ 436 (596)
+.+-..+...++++++++|.+++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. +|. .+..
T Consensus 29 ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~----~~~~ 102 (291)
T 2qcs_B 29 KDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE----WATS 102 (291)
T ss_dssp CCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE----EEEE
T ss_pred CCHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe----EEEE
Confidence 3344455567899999999999999999999999999999999999999999999999999999998 332 2588
Q ss_pred cCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 437 LSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 437 l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
+.+|++||+.+++. ..++.++++|.++|+++.|++++|.+++.++|
T Consensus 103 l~~G~~fGe~~l~~---------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 148 (291)
T 2qcs_B 103 VGEGGSFGELALIY---------GTPRAATVKAKTNVKLWGIDRDSYRRILMGST 148 (291)
T ss_dssp ECTTCEECGGGGTC---------CCBCSSEEEESSCEEEEEEEHHHHHHHHHHHH
T ss_pred cCCCCccchHHHhc---------CCCCceEEEECCCEEEEEEEhHHHHHHHhhhH
Confidence 99999999988651 22578999999999999999999999999993
No 46
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.46 E-value=2.2e-13 Score=129.26 Aligned_cols=158 Identities=13% Similarity=0.056 Sum_probs=117.3
Q ss_pred EEecCCceEEccCCCCCeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEec
Q 007606 393 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 471 (596)
Q Consensus 393 ~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e 471 (596)
+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++. .+..+++|++||+ +++. ..++.++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~G~~~Ge-~~~~---------~~~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLI--TLRHVLPGDYFGE-EALE---------GKAYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEE--EEEEECTTCEECG-GGGT---------CSBCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEech-hhhC---------CCCceeEEEECC
Confidence 579999999999999999999999999999764 45553 3689999999999 8651 125688999999
Q ss_pred eEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhh---
Q 007606 472 NVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAE--- 548 (596)
Q Consensus 472 ~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~erY~~~~~~--- 548 (596)
+|+++.|++++|. | .+.......+...+....++...+...++++|+..++.+
T Consensus 70 ~~~v~~i~~~~~~------p------------------~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~ 125 (195)
T 3b02_A 70 EAVVQGLEPRAMD------H------------------EALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLFLAD 125 (195)
T ss_dssp SEEEEEECGGGCC------H------------------HHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT
T ss_pred cEEEEEEcHHHcC------H------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999987 2 111111233344456677788888899999999877765
Q ss_pred -cCC------CCCchhhHHHHhHHH------HHHHHHhhhcCCCC--CCcccc
Q 007606 549 -AGG------KPSKFGTAIYATQFF------TYVRRSVKRNGGLP--GGRVNI 586 (596)
Q Consensus 549 -~p~------~~~r~~~~~iAs~~~------~~~~~~~~~~~~~~--~~~~~~ 586 (596)
+|. +..++++++||+.+. ..+++-+++.|... +++|.|
T Consensus 126 ~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 178 (195)
T 3b02_A 126 TPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYL 178 (195)
T ss_dssp STTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEE
T ss_pred HcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 332 556799999998653 23446666777643 344554
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=145.49 Aligned_cols=118 Identities=18% Similarity=0.262 Sum_probs=103.5
Q ss_pred HHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCC-CeeeeEEEEecCCCC
Q 007606 363 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGD 441 (596)
Q Consensus 363 ~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~l~~G~ 441 (596)
.++..++++++.|..++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+. +++. ..+..+++|+
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~-~~v~~l~~Gd 322 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEY-VEVGRLGPSD 322 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCC-CEEEEECTTC
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCce-EEEEEeCCCC
Confidence 3455688889999999999999999999999999999999999999999999999999998642 2221 2368999999
Q ss_pred eeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHc
Q 007606 442 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 442 ~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~ 490 (596)
+|||.+++. ..++.++++|.++|+++.|++++|.+++..+
T Consensus 323 ~fGe~all~---------~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~ 362 (381)
T 4din_B 323 YFGEIALLL---------NRPRAATVVARGPLKCVKLDRPRFERVLGPC 362 (381)
T ss_dssp EECTTGGGS---------CCBCSSEEEESSCBEEEEEEHHHHHHHHCCH
T ss_pred EechHHHhC---------CCCceeEEEEcCCEEEEEEeHHHHHHHHhhh
Confidence 999999762 2267899999999999999999999999999
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.43 E-value=4.6e-13 Score=140.95 Aligned_cols=120 Identities=15% Similarity=0.220 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEe
Q 007606 357 NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKY 436 (596)
Q Consensus 357 r~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~ 436 (596)
+.+-......++++++++|.+++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. +++ .+..
T Consensus 120 ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~----~v~~ 193 (381)
T 4din_B 120 KDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE----WVTN 193 (381)
T ss_dssp CCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE----EEEE
T ss_pred CCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe----Eeee
Confidence 3444445567899999999999999999999999999999999999999999999999999999997 333 2578
Q ss_pred cCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHcc
Q 007606 437 LSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 437 l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P 491 (596)
+++|++||+.+++. ..++.++++|.++|+++.|++++|.+++.++|
T Consensus 194 l~~G~~fGe~all~---------~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~ 239 (381)
T 4din_B 194 ISEGGSFGELALIY---------GTPRAATVKAKTDLKLWGIDRDSYRRILMGST 239 (381)
T ss_dssp EESSCCBCGGGGTS---------CCBCSSEEEESSSCEEEEEEHHHHHHHHHHHH
T ss_pred CCCCCEEEchHHhc---------CCCcceEEEECCCEEEEEEchHHHHHhhhhhh
Confidence 99999999998762 22578999999999999999999999999993
No 49
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.42 E-value=4.5e-13 Score=121.36 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----cchhHHHHHHHHHH
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTI------YLQS----GTIKLEEIKSKARE 311 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~------i~~~----~~~~~~~~~~~~~~ 311 (596)
.|..|+||++.|+|||||||++|.|..+++++++.+++|++++++.++.+++ +... .+....+..+++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999886 3332 24445666778999
Q ss_pred HHHHHHhcCCCHHHHHH
Q 007606 312 IEQWRTFEMLSQSLQQR 328 (596)
Q Consensus 312 i~~~m~~~~l~~~L~~r 328 (596)
+++++++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999875
No 50
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.41 E-value=6.1e-13 Score=141.59 Aligned_cols=115 Identities=12% Similarity=0.207 Sum_probs=99.8
Q ss_pred HHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCC-------CeeeeEEEEec
Q 007606 365 CLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-------GRNTSVFKKYL 437 (596)
Q Consensus 365 ~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~-------~~~~~~~~~~l 437 (596)
+..+++++++|..++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+. |++. .+..+
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~--~l~~l 342 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAV--EIARC 342 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------C--EEEEE
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCcee--EEEEe
Confidence 34567788999999999999999999999999999999999999999999999999997543 4443 36899
Q ss_pred CCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHc
Q 007606 438 STGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 438 ~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~ 490 (596)
++|++|||.+++. ..++.++++|.++|+++.|++++|.+++..+
T Consensus 343 ~~G~~fGE~all~---------~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~ 386 (416)
T 3tnp_B 343 FRGQYFGELALVT---------NKPRAASAHAIGTVKCLAMDVQAFERLLGPC 386 (416)
T ss_dssp CTTCEESGGGGTC---------CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCH
T ss_pred CCCCEecHHHHhC---------CCCceeEEEEcCCeEEEEEEHHHHHHHhcch
Confidence 9999999998761 2267899999999999999999999999999
No 51
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.40 E-value=4.8e-13 Score=127.63 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=118.2
Q ss_pred HHhhceEEEecCCceEEccCCCC--CeEEEEEeeeEEEEEeC-CCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCC
Q 007606 386 MCKCLKPVLYVQECCIVKEGDPI--CEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPH 462 (596)
Q Consensus 386 l~~~~~~~~~~kge~Ii~~Ge~~--~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~ 462 (596)
+...++.+.|++|++|+++|+++ +.+|+|.+|.|+++..+ +|++.+ +..+++|++||+ +++. ..+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l~---------~~~ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EALF---------GQE 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHHH---------TCC
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhcC---------CCC
Confidence 34667889999999999999999 99999999999998764 455543 689999999999 6542 125
Q ss_pred cccEEEEeceEEEEEEcHHHHHHHHHHccchhhhhhccchhhhcccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 007606 463 SNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENIL 542 (596)
Q Consensus 463 s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~erY 542 (596)
+..+++|+++|+++.| +++|. | .-+..+. ..+...+....++.......++++|+
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p-----------------~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~Rl 123 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------P-----------------ELLKDLA-QHLSQGLAEAYRRIERLATQRLKNRM 123 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------H-----------------HHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------H-----------------HHHHHHH-HHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6889999999999999 88875 2 1111222 23334556667788888899999999
Q ss_pred hhhhhhc----------CCCCCchhhHHHHhHHH------HHHHHHhhhcCCCC--CCcccc
Q 007606 543 QDQKAEA----------GGKPSKFGTAIYATQFF------TYVRRSVKRNGGLP--GGRVNI 586 (596)
Q Consensus 543 ~~~~~~~----------p~~~~r~~~~~iAs~~~------~~~~~~~~~~~~~~--~~~~~~ 586 (596)
..++.+. +.+..++++++||+.+. ..+++-+++.|... +++|.|
T Consensus 124 ~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 185 (202)
T 2zcw_A 124 AAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQL 185 (202)
T ss_dssp HHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 8877653 23567899999998763 23456667777643 344554
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.38 E-value=3e-12 Score=138.45 Aligned_cols=118 Identities=13% Similarity=0.166 Sum_probs=102.8
Q ss_pred HHHHHHHHHhhcCccccCCcHHHHHHHHhhceE-EEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecC
Q 007606 360 MKSELCLEVLKKVPMFQMMGKSILSEMCKCLKP-VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLS 438 (596)
Q Consensus 360 i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~-~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~ 438 (596)
-..+...+.++++++|..++++++..++..+.. +.|++|++|+++|+.++.+|||.+|.|+++..++ . .+..+.
T Consensus 330 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~-~----~~~~l~ 404 (469)
T 1o7f_A 330 DDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK-G----VVCTLH 404 (469)
T ss_dssp HHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT-E----EEEEEE
T ss_pred HHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC-e----eEEEec
Confidence 334445678999999999999999999999985 4899999999999999999999999999997433 2 258999
Q ss_pred CCCeeechhhhccCCCCCCCCCCCcccEEEEec-eEEEEEEcHHHHHHHHHHcc
Q 007606 439 TGDFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 439 ~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e-~~~ll~i~~~~f~~Ll~~~P 491 (596)
+|++||+.+++ +..++.++++|++ +|+++.|++++|.++++++|
T Consensus 405 ~G~~fGe~~ll---------~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p 449 (469)
T 1o7f_A 405 EGDDFGKLALV---------NDAPRAASIVLREDNCHFLRVDKEDFNRILRDVE 449 (469)
T ss_dssp TTCEECGGGGT---------CCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTT
T ss_pred CCCEEEEehhh---------cCCCceEEEEEecCCEEEEEEcHHHHHHHHHHCh
Confidence 99999999875 2235789999998 79999999999999999994
No 53
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.37 E-value=3.9e-13 Score=146.10 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 007606 239 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 300 (596)
Q Consensus 239 ~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~ 300 (596)
.+..|..|+||++.||||+||||+.|.+..++++++++|++|.+++++.+|.+.+.++....
T Consensus 372 ~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 372 QFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp SCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999999999999999999999999999999999999887766544
No 54
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.29 E-value=7.5e-12 Score=140.92 Aligned_cols=131 Identities=11% Similarity=0.144 Sum_probs=110.3
Q ss_pred HHHHhcchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhce-EEEecCCceEEccCCCCCeEEEEEeeeEEEEEe
Q 007606 346 ENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLK-PVLYVQECCIVKEGDPICEMFFITQGTLLTTTT 424 (596)
Q Consensus 346 ~~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~-~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~ 424 (596)
..++... +..|.+...+...+.++++++|.+++++++..++..+. .+.|++|++|+++||.++.+|||.+|.|+++..
T Consensus 12 r~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 4455443 44455555555678999999999999999999999998 789999999999999999999999999999975
Q ss_pred CCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEec-eEEEEEEcHHHHHHHHHHcc
Q 007606 425 NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAIVYQYW 491 (596)
Q Consensus 425 ~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e-~~~ll~i~~~~f~~Ll~~~P 491 (596)
+ . . .+..+.+|++||+.+++. ..++.++++|++ +|+++.|++++|.++++++|
T Consensus 91 g-~-~---il~~l~~Gd~fGe~al~~---------~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p 144 (694)
T 3cf6_E 91 G-K-G---VVCTLHEGDDFGKLALVN---------DAPRAASIVLREDNCHFLRVDKEDFNRILRDVE 144 (694)
T ss_dssp T-T-E---EEEEEETTCEECHHHHHH---------TCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTC
T ss_pred C-C-E---EEEEeCCCCEeehHHHhC---------CCCceEEEEEeeCceEEEEEeHHHHHHHHHHCH
Confidence 3 2 1 368999999999998762 124688999999 59999999999999999995
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.28 E-value=1.9e-11 Score=144.34 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCC---Ceee
Q 007606 354 VNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG---GRNT 430 (596)
Q Consensus 354 ~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~---~~~~ 430 (596)
|.-|.+--.+.....|+++++|..+++.++..+|..++.+.+++|++|+++||.++++|+|++|.|.++..+. +.+
T Consensus 29 p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~- 107 (999)
T 4f7z_A 29 PLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDA- 107 (999)
T ss_dssp SSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSC-
T ss_pred cccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCc-
Confidence 3445444445556789999999999999999999999999999999999999999999999999999997531 222
Q ss_pred eEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHHHHHHHHHccc
Q 007606 431 SVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQ 492 (596)
Q Consensus 431 ~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~f~~Ll~~~P~ 492 (596)
..+..+.+|+.||| +++. ..||+++++|.++|+++++++++|..++..+|+
T Consensus 108 -~~v~~l~~G~sFGE-all~---------n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e 158 (999)
T 4f7z_A 108 -VTICTLGIGTAFGE-SILD---------NTPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (999)
T ss_dssp -EEEEEEETTCEECG-GGGG---------TCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred -eeEEEecCCcchhh-hhcc---------CCCcceEEEeccceEEEEEEHHHHHHHHHhChH
Confidence 23688999999999 5542 125799999999999999999999999999963
No 56
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.26 E-value=9.7e-12 Score=111.32 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 007606 241 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 301 (596)
Q Consensus 241 ~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~ 301 (596)
..|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+...+
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999999999999999999999999999999999887554433
No 57
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.20 E-value=1.3e-11 Score=111.94 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 007606 239 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEI 305 (596)
Q Consensus 239 ~~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~~~ 305 (596)
....|..|+||++.|+|||||||++|.|..+++++++.+++|.+++++.+|.+++.+.+...++.+.
T Consensus 81 ~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~ 147 (155)
T 2a9h_A 81 ALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGH 147 (155)
T ss_dssp STTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----
T ss_pred ccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446899999999999999999999999999999999999999999999999999998877655433
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.17 E-value=2.2e-10 Score=135.24 Aligned_cols=129 Identities=13% Similarity=0.179 Sum_probs=104.8
Q ss_pred HHHhcchhhhHHHHHHHHHHHHhhcCccccCCcHHHHHHHHhhceEEE-ecCCceEEccCCCCCeEEEEEeeeEEEEEeC
Q 007606 347 NLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVL-YVQECCIVKEGDPICEMFFITQGTLLTTTTN 425 (596)
Q Consensus 347 ~ll~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~-~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~ 425 (596)
.++...|.+-..+ ..+...+.+.+++.|..++...+..++..+.... +++|++|++|||.++.+|||.+|.|.++...
T Consensus 318 ~~l~k~~~~rt~e-d~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~ 396 (999)
T 4f7z_A 318 MILRKPPGQRTVD-DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG 396 (999)
T ss_dssp HHHTSCGGGCCHH-HHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred hhhcCCcccccHH-HHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcC
Confidence 3444444333222 2344567899999999999999999999999765 5779999999999999999999999998744
Q ss_pred CCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEece-EEEEEEcHHHHHHHHHHc
Q 007606 426 GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN-VEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 426 ~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~-~~ll~i~~~~f~~Ll~~~ 490 (596)
++. +..+++||+|||.+++ +..|+.++|+|.+| |+++++++++|.+++.+.
T Consensus 397 ~~~-----v~~L~~Gd~FGElALL---------~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 397 KGV-----VCTLHEGDDFGKLALV---------NDAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp TEE-----EEEEETTCEECGGGGT---------CSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred Ccc-----eEEecCCCcccchhhc---------cCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 332 5789999999999976 23378999999985 999999999999999875
No 59
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.17 E-value=2e-11 Score=106.45 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 007606 240 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 300 (596)
Q Consensus 240 ~~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~ 300 (596)
...|..|+||++.|+||+||||++|.|..+++++++.+++|..++++.+|.+++.+.+..+
T Consensus 59 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 59 LITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999999999999876544
No 60
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.13 E-value=7.8e-11 Score=101.30 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKL 302 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~ 302 (596)
.|..|+||++.|+||+||||++|.|..+++++++.+++|..++++.++.+++.++......
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999985544443
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.09 E-value=1.9e-10 Score=92.79 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYL 295 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~ 295 (596)
.|..|+||++.|+||+||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999875
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.06 E-value=2.2e-10 Score=95.52 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007606 243 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 297 (596)
Q Consensus 243 Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~ 297 (596)
|..|+||++.|+||+||||+.|.|..+++++++.+++|..+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7899999999999999999999999999999999999999999999999988754
No 63
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.02 E-value=2.8e-11 Score=102.30 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 300 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~ 300 (596)
.|..|+||++.|+||+||||++|.+..+++++++.+++|..++++++|.+++.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999988866543
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.01 E-value=2.6e-11 Score=111.85 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 007606 241 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLE 303 (596)
Q Consensus 241 ~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~~ 303 (596)
..|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.....+..
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~ 128 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQ 128 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999876655543
No 65
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=102.53 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 297 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~ 297 (596)
.|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.+++.+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999998865
No 66
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.68 E-value=2.6e-08 Score=100.98 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 299 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~ 299 (596)
.|..|+|||+.|||||||||+.|.+...++++++.+++|.+++|+++|.+.+.+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999999999999998887643
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.62 E-value=2.9e-08 Score=100.94 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 299 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~ 299 (596)
.|..|+||++.|+|||||||++|.+...++++++.+++|.+++++++|.+.+.+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3779999999999999999999999999999999999999999999999998887654
No 68
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.60 E-value=4.6e-08 Score=98.45 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007606 241 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 297 (596)
Q Consensus 241 ~~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~ 297 (596)
..|..|+|||+.|+|||||||+.|.+...++++++.+++|.+++|+++|.+.+.+..
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348899999999999999999999999999999999999999999999988887754
No 69
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.52 E-value=1.4e-07 Score=93.13 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 297 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~ 297 (596)
.|..|+||+++|+|||||||++|.|+..++++++.+++|+.+++++++.+++.+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998876543
No 70
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.51 E-value=5.9e-08 Score=97.27 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGEN------LLASFIIIASLLLLLLVLGNLTIYLQSGTIKL 302 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~------~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~~ 302 (596)
.|+.|+||++.|+|||||||++|.+...+ +++++++++|..+++++++.+++.+.....+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999998887 59999999999999999999999887665443
No 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.40 E-value=1.7e-07 Score=92.61 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhccCCcccccCCChhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007606 243 FIYCFRWGLQTVSCAGQNLQTSTHEGE-------NLLASFIIIASLLLLLLVLGNLTIYLQS 297 (596)
Q Consensus 243 Yi~slYwa~~t~ttvGyGdi~p~t~~E-------~~~~i~~~l~G~~~fa~iig~i~~i~~~ 297 (596)
|+.|+||++.|+|||||||++|.+... ++++++++++|..+++++++.++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998854 9999999999999999999999887654
No 72
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.33 E-value=4.3e-07 Score=91.25 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHHHHhhccCCcc-ccc-CCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 007606 237 KAFKKKFIYCFRWGLQTVSCAGQN-LQT-STHEGE----NLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 301 (596)
Q Consensus 237 ~~~~~~Yi~slYwa~~t~ttvGyG-di~-p~t~~E----~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~~ 301 (596)
++.+..+..|+||++.|+||+||| |+. |.+... ..+.+++++.|.++.+..+|.+.+-+.....+
T Consensus 175 ~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 175 PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999 985 665543 78889999999999999999888877654443
No 73
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.23 E-value=1.3e-06 Score=96.56 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN-LTIYL 295 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~-i~~i~ 295 (596)
.|..|+||++.|+||+||||++|.|..+++++++++++|++++++.++. +.+.+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999999988 55444
No 74
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.23 E-value=7.4e-08 Score=99.23 Aligned_cols=57 Identities=11% Similarity=0.199 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 298 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~ 298 (596)
.|..|+||++.|+||+||||+.|.|..+++++++++++|.++++++++.+++.+.+.
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999999999999999999999999999999998887653
No 75
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.03 E-value=6.3e-06 Score=83.62 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhccCCcccccCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 007606 243 FIYCFRWGLQTVSCAGQNLQTST--HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 300 (596)
Q Consensus 243 Yi~slYwa~~t~ttvGyGdi~p~--t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~~ 300 (596)
+..++|||+.|+|||||||+.|. +..-++++++.+++|.++.|+.+|.+.+-+.....
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 56789999999999999999996 67899999999999999999999988877765443
No 76
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.91 E-value=1.3e-05 Score=81.27 Aligned_cols=58 Identities=10% Similarity=0.210 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhccCCcccccC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTS--THEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 299 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p--~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~~~ 299 (596)
.+..++|||+.|+||+||||+.| .+..-++++++.+++|.++.|..+|-+.+-+....
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 36789999999999999999976 48899999999999999999999998887776544
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=94.22 E-value=0.14 Score=48.73 Aligned_cols=57 Identities=19% Similarity=0.040 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhccCCcccccC----CChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007606 240 KKKFIYCFRWGLQTVSCAGQNLQTS----THEGEN-LLASFIIIASLLLLLLVLGNLTIYLQ 296 (596)
Q Consensus 240 ~~~Yi~slYwa~~t~ttvGyGdi~p----~t~~E~-~~~i~~~l~G~~~fa~iig~i~~i~~ 296 (596)
+.....|++|.+.++|+.|++|+-. .+..-. .+..++.+.+.++....+|-+.+-.+
T Consensus 163 F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 163 WGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp TSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457789999999999999998721 111222 33334444445555555655555444
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=84.51 E-value=0.49 Score=41.71 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhhhcceeeeEEEEcCCccceeccccchhhHHHHHhhhhheeee-eeCCcccccchhhhhhhhhhhhhH
Q 007606 53 WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-YSSSTPHKHSRANAKKCFYLNSFL 131 (596)
Q Consensus 53 Wd~~~~~~~~~~~~~~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~-f~~~~~v~d~~~Ia~~~~Ylk~F~ 131 (596)
||.++.++.+.+++++-+..... .+......+..+|.++=++|.+ +-- +....|. .+ +|+++=+
T Consensus 23 f~~~i~~lil~sv~~v~~et~~~----------i~~~~~~~~~~id~~~~~iF~~Ey~l-Rl~~a~~--k~--~f~~~~i 87 (147)
T 2kyh_A 23 VELGVSYAALLSVIVVVVEYTMQ----------LSGEYLVRLYLVDLILVIILWADYAY-RAYKSGD--PA--GYVKKTL 87 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTC--HH--HHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh----------hchhHHHHHHHHHHHHHHHHHHHHHH-HHHHCCc--HH--HHHHHHH
Confidence 77777777777766665543321 1122233466677777666666 100 0111111 24 8888867
Q ss_pred HHHhhcCChhhhh
Q 007606 132 KDLLSCLPIPQLV 144 (596)
Q Consensus 132 ~Dlls~lP~~~l~ 144 (596)
+|++|++|+....
T Consensus 88 iDllailP~~~~~ 100 (147)
T 2kyh_A 88 YEIPALVPAGLLA 100 (147)
T ss_dssp TTHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999987543
No 79
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=67.88 E-value=19 Score=33.63 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=51.5
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEE
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 469 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A 469 (596)
+....+++|+.+-..--+.+.+.+|++|.+++... +++ ..+.+||++---+ .....+.|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~~~~p~--------------~~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NNK-----KTISNGDFLEITA--------------NHNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SCE-----EEEETTEEEEECS--------------SCCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CEE-----EEECCCCEEEECC--------------CCCEEEEE
Confidence 45566899999877777888999999999999874 332 5689998763221 13557889
Q ss_pred eceEEEEEE
Q 007606 470 VTNVEAFAI 478 (596)
Q Consensus 470 ~e~~~ll~i 478 (596)
.++|.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999877
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=66.45 E-value=25 Score=28.77 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=45.2
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEE
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 469 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A 469 (596)
+....+++|..+-..-.....+++|++|.+++... +++ ..+.+||.+---. ...-.+.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i~ip~--------------~~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD--GAQ-----RRLHQGDLLYLGA--------------GAAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEET--TEE-----EEECTTEEEEECT--------------TCCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEEC--CEE-----EEECCCCEEEECC--------------CCcEEEEe
Confidence 34456788887765555567899999999998763 332 5689998764322 12446778
Q ss_pred eceEEEEE
Q 007606 470 VTNVEAFA 477 (596)
Q Consensus 470 ~e~~~ll~ 477 (596)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88877554
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=64.81 E-value=28 Score=28.13 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=41.2
Q ss_pred EEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEece
Q 007606 393 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN 472 (596)
Q Consensus 393 ~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~ 472 (596)
..+++|..+-........+++|++|.+.+... ++. ..+.+||.+---+ ...-.+.+.++
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~--~~~-----~~l~~Gd~i~i~~--------------~~~H~~~~~~~ 101 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITFD--DQK-----IDLVPEDVLMVPA--------------HKIHAIAGKGR 101 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEET--TEE-----EEECTTCEEEECT--------------TCCBEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEEC--CEE-----EEecCCCEEEECC--------------CCcEEEEeCCC
Confidence 33566665543444567899999999998762 332 5699999763322 11335566677
Q ss_pred EEEEEE
Q 007606 473 VEAFAI 478 (596)
Q Consensus 473 ~~ll~i 478 (596)
+.++.+
T Consensus 102 ~~~~~i 107 (114)
T 2ozj_A 102 FKMLQI 107 (114)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 777654
No 82
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=59.80 E-value=69 Score=26.38 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=32.7
Q ss_pred EEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 392 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 392 ~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
...+.+|..+-.. ...+++++|++|.+++.. ++++ ..+.+||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~~-----~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGET-----VTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTEE-----EEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCEE-----EEECCCCEEE
Confidence 4457777665443 267899999999999977 3442 5699999874
No 83
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=58.49 E-value=11 Score=42.53 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhccCCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007606 242 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 297 (596)
Q Consensus 242 ~Yi~slYwa~~t~ttvGyGdi~p~t~~E~~~~i~~~l~G~~~fa~iig~i~~i~~~ 297 (596)
....++++++.++++.| ++..|.+...+++.+++++++.++.+...+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678999999999888 68899999999999999999999999999999999875
No 84
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=58.26 E-value=70 Score=25.56 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=44.0
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEE
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 469 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A 469 (596)
+....+++|...-..--...++++|++|.+.+.. +++. ..+.+|+.+---. ...-.+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~-----~~l~~Gd~~~ip~--------------~~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGVI-----KVLTAGDSFFVPP--------------HVDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTEE-----EEECTTCEEEECT--------------TCCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCEE-----EEeCCCCEEEECc--------------CCceeeEe
Confidence 3445678887653333336689999999999876 3332 5699999863222 12345667
Q ss_pred eceEEEEEE
Q 007606 470 VTNVEAFAI 478 (596)
Q Consensus 470 ~e~~~ll~i 478 (596)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 778887766
No 85
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=56.62 E-value=49 Score=26.51 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=42.8
Q ss_pred eEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEe
Q 007606 391 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 470 (596)
Q Consensus 391 ~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~ 470 (596)
....+++|..+-..-.....+++|++|.+.+.. +++. ..+.+|+.+---. ...-.+.+.
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~-----~~l~~Gd~~~ip~--------------~~~H~~~~~ 101 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQET-----YRVAEGQTIVMPA--------------GIPHALYAV 101 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTEE-----EEEETTCEEEECT--------------TSCEEEEES
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCEE-----EEECCCCEEEECC--------------CCCEEEEEC
Confidence 344567777654333345689999999999876 2332 5689998874221 123456677
Q ss_pred ceEEEEEE
Q 007606 471 TNVEAFAI 478 (596)
Q Consensus 471 e~~~ll~i 478 (596)
++++++.+
T Consensus 102 ~~~~~~~v 109 (115)
T 1yhf_A 102 EAFQMLLV 109 (115)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 77777654
No 86
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=50.02 E-value=16 Score=31.14 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHhhhcceeeeEEEEcCCccceeccccchhhHHHHHhhhhheeee---eeCCcccccchhhhhhhhhh
Q 007606 51 PFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII---YSSSTPHKHSRANAKKCFYL 127 (596)
Q Consensus 51 ~~Wd~~~~~~~~~~~~~~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~---f~~~~~v~d~~~Ia~~~~Yl 127 (596)
+.+|.+++++++.+++..-+...- +.+......+..+|.++-++|.+ .+ ...-+. .+ +|+
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~----------~~~~~~~~~l~~~d~~~~~iFt~E~~lR---l~~~~~--~~--~y~ 68 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTM----------QLSGEYLVRLYLVDLILVIILWADYAYR---AYKSGD--PA--GYV 68 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS----------CCCSHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTS--TT--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhch----------hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCC--HH--HHH
Confidence 347777777777766555443211 11222334566677777777766 21 000010 24 777
Q ss_pred hhhHHHHhhcCChhhhh
Q 007606 128 NSFLKDLLSCLPIPQLV 144 (596)
Q Consensus 128 k~F~~Dlls~lP~~~l~ 144 (596)
+.=++|+++++|+..-.
T Consensus 69 ~~niiDllailp~~~~~ 85 (132)
T 1ors_C 69 KKTLYEIPALVPAGLLA 85 (132)
T ss_dssp TTCGGGTGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 75478999999986433
No 87
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=42.41 E-value=77 Score=25.77 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=33.3
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
+....+++|..+-..--...++++|++|.+++... ++. ..+.+|+.+-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~--~~~-----~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIG--EET-----RVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEET--TEE-----EEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEC--CEE-----EEeCCCCEEE
Confidence 34556777776644434457899999999998763 332 5689998763
No 88
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=41.23 E-value=34 Score=30.55 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=36.0
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
+....++||......-..++++++|++|.+++...+.+... ...+.+||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 44566888877654433457999999999998765433222 36799999874
No 89
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=41.06 E-value=99 Score=27.56 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=31.0
Q ss_pred EEecCCceEEc---cCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 393 VLYVQECCIVK---EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 393 ~~~~kge~Ii~---~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
..++||...-. ......++++|++|.+++...+++... ...+.+||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 34666654331 222346899999999998875422211 26799999874
No 90
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=40.21 E-value=40 Score=30.12 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=39.1
Q ss_pred CCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEec-eEEEEEEcHHH
Q 007606 407 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDD 482 (596)
Q Consensus 407 ~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e-~~~ll~i~~~~ 482 (596)
..++++++++|.+.+-..++|+.. ...+.+|++|=--. . -.-+-++-+ +|..+.+.+..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~lP~--------g------vpH~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFLLPP--------H------VRHSPQRPEAGSACLVIERQR 113 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEEECT--------T------CCEEEEBCCTTCEEEEEEECC
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEEeCC--------C------CCcCccccCCCCEEEEEEeCC
Confidence 467899999999999887755322 26799999884221 1 122344555 77777776544
No 91
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=40.12 E-value=42 Score=27.50 Aligned_cols=49 Identities=16% Similarity=0.027 Sum_probs=32.2
Q ss_pred ceEEEecCCceEEccCCC-CCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 390 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
+....++||..+-..--. ...+++|++|.+++...+ +++ ..+.+||.+-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~-~~~-----~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGN-GIV-----THLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECST-TCE-----EEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECC-CeE-----EEeCCCCEEE
Confidence 445567788776443333 367889999999986523 332 5688998763
No 92
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=40.12 E-value=1.3e+02 Score=23.41 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=39.6
Q ss_pred EEEecCCceEEccCCC-CCeE-EEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEE
Q 007606 392 PVLYVQECCIVKEGDP-ICEM-FFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 469 (596)
Q Consensus 392 ~~~~~kge~Ii~~Ge~-~~~l-yfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A 469 (596)
...+++|..+-..--. ..++ ++|++|.+++...+ +++ ..+.+||.+---. ...-.+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~~-----~~l~~Gd~~~ip~--------------~~~H~~~~ 96 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DAV-----IPAPRGAVLVAPI--------------STPHGVRA 96 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GCE-----EEECTTEEEEEET--------------TSCEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CEE-----EEECCCCEEEeCC--------------CCcEEEEE
Confidence 3456777765432222 2456 79999999987632 232 5689998763322 11335666
Q ss_pred eceEEEEEE
Q 007606 470 VTNVEAFAI 478 (596)
Q Consensus 470 ~e~~~ll~i 478 (596)
.+++.++.+
T Consensus 97 ~~~~~~l~~ 105 (110)
T 2q30_A 97 VTDMKVLVT 105 (110)
T ss_dssp SSSEEEEEE
T ss_pred cCCcEEEEE
Confidence 777765543
No 93
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=39.24 E-value=39 Score=26.89 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=40.2
Q ss_pred ecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEE
Q 007606 395 YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVE 474 (596)
Q Consensus 395 ~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ 474 (596)
..+|+.....-+...++++|++|.+++...+ ++. ..+.+||.+---. ...-.+.+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~~-----~~l~~Gd~~~ip~--------------~~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GGS-----MTIREGEMAVVPK--------------SVSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SCE-----EEECTTEEEEECT--------------TCCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-CcE-----EEECCCCEEEECC--------------CCcEeeEeCCCeE
Confidence 3455543333332378999999999987743 132 5699998763222 0123445557888
Q ss_pred EEEEcHHHH
Q 007606 475 AFAINTDDL 483 (596)
Q Consensus 475 ll~i~~~~f 483 (596)
++.++....
T Consensus 95 ~l~i~~~~~ 103 (107)
T 2i45_A 95 LVLIELSDP 103 (107)
T ss_dssp EEEEECC--
T ss_pred EEEEECCCc
Confidence 888765443
No 94
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=38.22 E-value=1.1e+02 Score=28.20 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=46.5
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEE
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 469 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A 469 (596)
+....+++|+.+-..-...+.+++|++|.+++... ++. ..+.+||.+---+ ...-.+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--g~~-----~~l~~Gd~i~ip~--------------~~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD--GKP-----FIVKKGESAVLPA--------------NIPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET--TEE-----EEEETTEEEEECT--------------TSCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC--CEE-----EEECCCCEEEECC--------------CCcEEEEe
Confidence 45567899988765555567899999999998763 332 5689998763222 12446777
Q ss_pred -eceEEEEEE
Q 007606 470 -VTNVEAFAI 478 (596)
Q Consensus 470 -~e~~~ll~i 478 (596)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 788877643
No 95
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=34.70 E-value=1e+02 Score=25.58 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=30.5
Q ss_pred EecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 394 LYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 394 ~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
...+|..-....+ .+++++|++|.+.+... +|+. ..+++||.+--
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~~-----~~l~~GD~~~i 99 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGTV-----HAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCCE-----EEEETTCEEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCeE-----EEECCCCEEEE
Confidence 3556665544332 27899999999998864 3332 56999998743
No 96
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=34.39 E-value=86 Score=24.13 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=33.6
Q ss_pred CeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEc
Q 007606 409 CEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 479 (596)
Q Consensus 409 ~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~ 479 (596)
.++++|++|.+.+...+ +. ..+.+|+.+---. ...-.+.+.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~~~--~~-----~~l~~Gd~~~ip~--------------~~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRD--QN-----ITLQAGEMYVIPK--------------GVEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEECSS--CE-----EEEETTEEEEECT--------------TCCBEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEECC--EE-----EEEcCCCEEEECC--------------CCeEeeEcCCCCEEEEEE
Confidence 68999999999987632 22 5688988763221 113355666788888775
No 97
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=34.15 E-value=69 Score=24.67 Aligned_cols=47 Identities=6% Similarity=0.007 Sum_probs=31.2
Q ss_pred eEEEecCCceEEccCCC-CCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 391 KPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 391 ~~~~~~kge~Ii~~Ge~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
....+++|..+-..--. ..++++|++|.+.+... ++. ..+.+||.+-
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~~-----~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EEE-----ALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TEE-----EEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CEE-----EEeCCCCEEE
Confidence 34457777766433323 35799999999998763 332 5689999763
No 98
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=33.64 E-value=60 Score=25.60 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=32.5
Q ss_pred eEEEecCCceEEcc--CCC-CCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 391 KPVLYVQECCIVKE--GDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 391 ~~~~~~kge~Ii~~--Ge~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
....+++|..+-.. --. ..++++|++|.+.+... ++. ..+.+|+.+-
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~~-----~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GHT-----QALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TEE-----EEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CEE-----EEeCCCCEEE
Confidence 44567888766443 233 56899999999998763 332 5689998763
No 99
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=31.88 E-value=52 Score=29.37 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=31.6
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCee
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 443 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 443 (596)
+....++||...-.--....+..+|++|.+++...+ +++ ..+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge~-----~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GAK-----RTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GCE-----EEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-CeE-----EEECCCCEE
Confidence 344567777643222233456889999999987643 332 569999998
No 100
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=31.06 E-value=38 Score=28.13 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=30.9
Q ss_pred EecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 394 LYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 394 ~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
...+|..-.... ..++++.|++|.+++...+ |.. ..+++||.+--
T Consensus 48 e~tPG~~~~~~~-~~~E~~~iLeG~~~lt~dd-G~~-----~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAGR-DLEETFVVVEGEALYSQAD-ADP-----VKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECCC-SEEEEEEEEECCEEEEETT-CCC-----EEECTTEEEEE
T ss_pred ecCCceeECeeC-CCcEEEEEEEeEEEEEeCC-CeE-----EEECCCCEEEE
Confidence 455665555443 2358999999999998754 432 57999998753
No 101
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=30.29 E-value=96 Score=28.08 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=45.2
Q ss_pred hceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEE
Q 007606 389 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 468 (596)
Q Consensus 389 ~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~ 468 (596)
.+....+++|..+-...-...++.+|++|.++ ++. ..+.+|+++=.-. .+.-+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-------~~~~~Gd~~~~p~--------------g~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-------DRFGAGDIEIADQ--------------ELEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-------SEEETTCEEEECS--------------SCCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-------EEECCCeEEEeCc--------------CCccCCE
Confidence 45677889999998877788899999999965 222 3588898764322 1233455
Q ss_pred E--eceEEEEEE
Q 007606 469 S--VTNVEAFAI 478 (596)
Q Consensus 469 A--~e~~~ll~i 478 (596)
+ .++|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 678888765
No 102
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=30.03 E-value=33 Score=26.89 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=30.9
Q ss_pred eEEEecCCceEEccCCCC-CeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 391 KPVLYVQECCIVKEGDPI-CEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 391 ~~~~~~kge~Ii~~Ge~~-~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
....++||...-..--.. +.+++|++|.+++...++.+ ...+.+||.+-.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEEe
Confidence 345567776542111223 35999999999987643212 257999988743
No 103
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=28.80 E-value=1.2e+02 Score=29.10 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=43.8
Q ss_pred eEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEe
Q 007606 391 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 470 (596)
Q Consensus 391 ~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~ 470 (596)
....++||.---......+++.+|++|.+.+...+ +++ ..+.+|+++=.-+ ...-+++..
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~~-----~~L~~Gds~y~p~--------------~~~H~~~N~ 132 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SSS-----KKLTVDSYAYLPP--------------NFHHSLDCV 132 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CCC-----EEECTTEEEEECT--------------TCCCEEEES
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-CcE-----EEEcCCCEEEECC--------------CCCEEEEeC
Confidence 34567887753222344578999999999998642 332 5699998774332 112344556
Q ss_pred ceEEEEEEcH
Q 007606 471 TNVEAFAINT 480 (596)
Q Consensus 471 e~~~ll~i~~ 480 (596)
++++++.+.+
T Consensus 133 ~~Ar~l~V~k 142 (266)
T 4e2q_A 133 ESATLVVFER 142 (266)
T ss_dssp SCEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 7888888743
No 104
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=28.18 E-value=1.7e+02 Score=25.26 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 407 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 407 ~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
..+++++|++|.+++.. +|+. ..+.+||.+-
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~~-----~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGRK-----VSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTEE-----EEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCEE-----EEEcCCCEEE
Confidence 35688999999999986 4442 5699999773
No 105
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=28.04 E-value=99 Score=28.65 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=24.6
Q ss_pred CCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 406 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 406 e~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
-+.+++|+|++|.++....++ + ...+++|+.+-
T Consensus 150 Hp~EEiy~VLsG~~e~~v~~g-~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHLRNA-P-----DLMLEPGQTRF 182 (217)
T ss_dssp CSSEEEEEEEEECEEEEETTS-C-----CEEECTTCEEE
T ss_pred CCCceEEEEEeCCEEEEECCC-C-----EEecCCCCEEE
Confidence 356799999999999877433 3 25689998764
No 106
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=27.99 E-value=2.2e+02 Score=22.43 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=33.5
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
+....+++|+.-.. -...++++|++|.+.+...+ ++. ..+.+||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~-g~~-----~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTED-GKK-----YVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETT-CCE-----EEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECC-CCE-----EEECCCCEEE
Confidence 44566788876544 34678999999999988732 332 5699999874
No 107
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=27.96 E-value=1.4e+02 Score=30.01 Aligned_cols=79 Identities=11% Similarity=0.076 Sum_probs=58.1
Q ss_pred eEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEe
Q 007606 391 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 470 (596)
Q Consensus 391 ~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~ 470 (596)
....+++|+..-..-..+..+|.|.+|.-.+.. +++. ...++||.|---.. ...+..+.
T Consensus 282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I--~~~~-----~~w~~gD~fvvP~w--------------~~h~~~n~ 340 (368)
T 3nw4_A 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM--NGET-----TKLEKGDMFVVPSW--------------VPWSLQAE 340 (368)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEESCEEEEE--TTEE-----EEECTTCEEEECTT--------------CCEEEEES
T ss_pred heEEECCCCccCCeeccccEEEEEEeCcEEEEE--CCEE-----EEecCCCEEEECCC--------------CcEEEEeC
Confidence 345677887765555667799999999988766 3332 56899999854432 35577888
Q ss_pred ceEEEEEEcHHHHHHHHHHc
Q 007606 471 TNVEAFAINTDDLRAIVYQY 490 (596)
Q Consensus 471 e~~~ll~i~~~~f~~Ll~~~ 490 (596)
++|.++.++-.-+++-+.-+
T Consensus 341 ~~a~Lf~~~D~Pl~~~LGl~ 360 (368)
T 3nw4_A 341 TQFDLFRFSDAPIMEALSFM 360 (368)
T ss_dssp SSEEEEEEESHHHHHHTTCC
T ss_pred CCEEEEEEeCHHHHHHhCCc
Confidence 99999999998888877655
No 108
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=27.12 E-value=2.2e+02 Score=23.78 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=30.7
Q ss_pred EEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 392 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 392 ~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
...+.||..-... ..+++++|++|.+.+... ++. ..+.+||.+--
T Consensus 61 ~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~~--g~~-----~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWTL--NYDEIDMVLEGELHVRHE--GET-----MIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEEC--SSEEEEEEEEEEEEEEET--TEE-----EEEETTCEEEE
T ss_pred EEEECCCCccccC--CCCEEEEEEECEEEEEEC--CEE-----EEECCCcEEEE
Confidence 4456777432222 357899999999998763 442 56999998743
No 109
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=26.97 E-value=1.2e+02 Score=26.09 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=40.2
Q ss_pred cCCCCCeEEEEEeeeEEEEEeCCC--eeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHH
Q 007606 404 EGDPICEMFFITQGTLLTTTTNGG--RNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTD 481 (596)
Q Consensus 404 ~Ge~~~~lyfI~~G~v~v~~~~~~--~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~ 481 (596)
.-+..+++++|++|.+++...+++ ... .....+.+|+++-- |+. -.-.-.|.++|.++.+...
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~-d~~V~l~~Ge~yvV--------PkG------veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFN-IELTLMEKGKVYNV--------PAE------CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEE-EEEEECCTTCCEEE--------CTT------CEEEEEECTTCEEEEEEES
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCc-cceEEecCCCEEEe--------CCC------ccCcccCCCceEEEEEEeC
Confidence 345578999999999998876421 000 01357899988742 221 1334567788888888655
No 110
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=26.18 E-value=1.8e+02 Score=29.09 Aligned_cols=76 Identities=8% Similarity=0.078 Sum_probs=50.7
Q ss_pred EEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEec
Q 007606 392 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 471 (596)
Q Consensus 392 ~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e 471 (596)
...+++|..--.--.....+|+|.+|..++.. ++++ ..+.+||.|---.. ....+++.+
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~~-----~~~~~GD~~~vP~~--------------~~H~~~n~e 330 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNET-----FSFSAKDIFVVPTW--------------HGVSFQTTQ 330 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTEE-----EEEETTCEEEECTT--------------CCEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCEE-----EEEcCCCEEEECCC--------------CeEEEEeCC
Confidence 44677776554333455689999999999877 3432 67999998743321 134566678
Q ss_pred eEEEEEEcHHHHHHHHH
Q 007606 472 NVEAFAINTDDLRAIVY 488 (596)
Q Consensus 472 ~~~ll~i~~~~f~~Ll~ 488 (596)
++.++.++-..+.+-+.
T Consensus 331 ~~~l~~~~d~p~~~~lg 347 (354)
T 2d40_A 331 DSVLFSFSDRPVQEALG 347 (354)
T ss_dssp EEEEEEEESHHHHHHTT
T ss_pred CEEEEEEcCHHHHHHhC
Confidence 99999987766655443
No 111
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=26.04 E-value=1.2e+02 Score=26.48 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=31.3
Q ss_pred eEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 391 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 391 ~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
....+++|...-..--...++++|++|.+.+... ++. ..+.+||++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DRV-----EPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TEE-----EEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CEE-----EEECCCCEEE
Confidence 3445666665433233467899999999998763 332 5689999764
No 112
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=25.40 E-value=1.3e+02 Score=21.99 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHh-cCCCHH--HHHHHHHHHHHHH
Q 007606 303 EEIKSKAREIEQWRTF-EMLSQS--LQQRVRNHQQYVW 337 (596)
Q Consensus 303 ~~~~~~~~~i~~~m~~-~~l~~~--L~~rv~~y~~~~~ 337 (596)
..|++.+.++.+||.. .+++.. ++.|+.+|+....
T Consensus 22 ~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~ 59 (64)
T 2db7_A 22 LGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYA 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHh
Confidence 4899999999999998 567766 9999999988654
No 113
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=24.68 E-value=89 Score=27.86 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=51.0
Q ss_pred HHHHHHHhhceE----EEecCCceEE-ccC----------CCCCeEEEEEeeeEEEEEeCCC----eeeeEEEEecCCCC
Q 007606 381 SILSEMCKCLKP----VLYVQECCIV-KEG----------DPICEMFFITQGTLLTTTTNGG----RNTSVFKKYLSTGD 441 (596)
Q Consensus 381 ~~l~~l~~~~~~----~~~~kge~Ii-~~G----------e~~~~lyfI~~G~v~v~~~~~~----~~~~~~~~~l~~G~ 441 (596)
+.++.....+++ +..-.+++++ .-| +..++++++++|.+.+-..++| +-. ...+.+||
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~---dv~i~eGd 88 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFI---DIIINEGD 88 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEE---EEEECTTE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCccccee---eEEECCCC
Confidence 344555566665 4433355543 222 2346899999999999887755 111 25799999
Q ss_pred eeechhhhccCCCCCCCCCCCcccEEEEeceEEEEEEcHHH
Q 007606 442 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDD 482 (596)
Q Consensus 442 ~fGe~~ll~~~~~~s~~~~~~s~~si~A~e~~~ll~i~~~~ 482 (596)
+|=--. + -.-+-++-++|..+.+.+..
T Consensus 89 mfllP~-----------g---vpHsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 89 SYLLPG-----------N---VPHSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp EEEECT-----------T---CCEEEEECTTCEEEEEEECC
T ss_pred EEEcCC-----------C---CCcCCcccCCcEEEEEEecC
Confidence 873221 1 12244456788888887654
No 114
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=24.47 E-value=2.7e+02 Score=25.95 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=41.4
Q ss_pred EEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEec
Q 007606 392 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 471 (596)
Q Consensus 392 ~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~e 471 (596)
...++||...-..- .+++.+|++|.+++... +++ ..+.+||++---+ + ..-.+++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~--~~~-----~~l~~Gd~~~~p~-----------~---~~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVG--GET-----RTLREYDYVYLPA-----------G---EKHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECS--SCE-----EEECTTEEEEECT-----------T---CCCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEEC--CEE-----EEECCCCEEEECC-----------C---CCEEEEeCC
Confidence 45677876654432 67889999999998763 332 5699999764332 1 122344447
Q ss_pred eEEEEEEc
Q 007606 472 NVEAFAIN 479 (596)
Q Consensus 472 ~~~ll~i~ 479 (596)
+++++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77777664
No 115
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=24.19 E-value=82 Score=32.43 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=38.0
Q ss_pred hceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 389 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 389 ~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
.+....++||..+...-..++++++|++|.+++...+.+... ...+.+||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 355677899987765555567999999999998764433222 36799999874
No 116
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=23.39 E-value=65 Score=32.93 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=34.3
Q ss_pred eEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 391 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 391 ~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
....++||+.+-..--...++|||++|.-.....+ |++ ..+++||++--
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~-G~~-----~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVD-GHK-----VELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEET-TEE-----EEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEEC-CEE-----EEEcCCCEEEE
Confidence 66778888877544444568999999987554444 442 56999998743
No 117
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=23.18 E-value=1.1e+02 Score=26.85 Aligned_cols=46 Identities=11% Similarity=-0.082 Sum_probs=30.3
Q ss_pred EEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 392 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 392 ~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
...+++|...-..--...++++|++|.+++.. +++. ..+.+||++-
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~~-----~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRAV-----SAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTEE-----EEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCEE-----EEeCCCCEEE
Confidence 34466666543333345678999999999866 3332 5689999764
No 118
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=22.96 E-value=88 Score=25.08 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=28.3
Q ss_pred EEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEE-ecCCCCeee
Q 007606 393 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKK-YLSTGDFWG 444 (596)
Q Consensus 393 ~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~-~l~~G~~fG 444 (596)
..+++|...-..--....+++|++|.+++...+ +. . .+.+|+.+-
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~--~~-----~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLED--QE-----PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEETT--SC-----CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEECC--EE-----EEEeCCCCEEE
Confidence 345566544222223457899999999987632 22 3 688998763
No 119
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=22.55 E-value=1.3e+02 Score=25.59 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=33.3
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeec
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 445 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 445 (596)
+....++||..+-...-.....++|++|..+.. .++... -..+++|+++-.
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~--~g~~~~---~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR--GGKAAG---GDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEET--TCGGGT---SEEEESSEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc--CCCEec---ceEeCCCEEEEE
Confidence 556778999888665555667799999998832 222110 035778887643
No 120
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=22.28 E-value=1.1e+02 Score=26.43 Aligned_cols=46 Identities=13% Similarity=-0.002 Sum_probs=29.9
Q ss_pred EEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 392 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 392 ~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
...+++|...-..--...++++|++|.+++.. +++. ..+.+||++-
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~~-----~~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GETI-----SDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTEE-----EEEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCEE-----EEeCCCCEEE
Confidence 33456666543333345678999999999876 3332 5688998763
No 121
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=21.96 E-value=1.6e+02 Score=23.77 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=46.5
Q ss_pred eEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEEe
Q 007606 391 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 470 (596)
Q Consensus 391 ~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A~ 470 (596)
....+++|...-..--...++++|++|.+++... ++. ..+.+|+++---.- ..-.+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~--~~~-----~~l~~Gd~~~i~~~--------------~~H~~~~~ 95 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRIN--DED-----FPVTKGDLIIIPLD--------------SEHHVINN 95 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEET--TEE-----EEEETTCEEEECTT--------------CCEEEEEC
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEEC--CEE-----EEECCCcEEEECCC--------------CcEEeEeC
Confidence 3445667664332223456899999999998773 332 56899987643220 12234442
Q ss_pred --ceEE--EEEEcHHHHHHHHHHc
Q 007606 471 --TNVE--AFAINTDDLRAIVYQY 490 (596)
Q Consensus 471 --e~~~--ll~i~~~~f~~Ll~~~ 490 (596)
++++ ++.++.+-+..++.+.
T Consensus 96 ~~~~~~~~~i~f~~~~~~~~~~~~ 119 (128)
T 4i4a_A 96 NQEDFHFYTIWWDKESTLNFLTRL 119 (128)
T ss_dssp SSSCEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECHHHHHHHHHhc
Confidence 3344 4567777777776665
No 122
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=21.77 E-value=92 Score=32.23 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=38.5
Q ss_pred hceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 389 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 389 ~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
.+....++||..+...-..++++++|++|..++...+++... ...+.+||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 355677899988766655567999999999998765433222 36789998874
No 123
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=21.68 E-value=97 Score=25.41 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=29.8
Q ss_pred EEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 392 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 392 ~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
...+++|...-.---...++++|++|.+++... +++ ..+.+|+.+-
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QGE-----ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SCE-----EEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CEE-----EEECCCCEEE
Confidence 344566655433233367899999999998763 222 5688888763
No 124
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=21.63 E-value=1.5e+02 Score=25.75 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=43.6
Q ss_pred hceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEE
Q 007606 389 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 468 (596)
Q Consensus 389 ~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~ 468 (596)
.+....++||..+-...-......+|++|..+.. +++ ..+.+|+++-+-. .+.-+..
T Consensus 43 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~--e~~-------~~~~~Gd~~~~P~--------------g~~H~~~ 99 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK--EHD-------WVAHAGSVVYETA--------------STRHTPQ 99 (159)
T ss_dssp EEEEEEECSSCBCCCEEESSCEEEEEEESCEEET--TSS-------CCBCTTCEEEECS--------------SEEECEE
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEEEe--CCC-------eEECCCeEEEECC--------------CCcceeE
Confidence 4456678888887665555677889999998742 222 2588888864432 1234566
Q ss_pred Ee----ceEEEEEE
Q 007606 469 SV----TNVEAFAI 478 (596)
Q Consensus 469 A~----e~~~ll~i 478 (596)
+. ++|.++..
T Consensus 100 ~~~~~~e~~~~~~~ 113 (159)
T 3ebr_A 100 SAYAEGPDIITFNI 113 (159)
T ss_dssp ESSSSSSCEEEEEE
T ss_pred eCCCCCCCEEEEEE
Confidence 66 67887774
No 125
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=20.91 E-value=1e+02 Score=31.99 Aligned_cols=53 Identities=9% Similarity=0.044 Sum_probs=37.5
Q ss_pred hceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 389 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 389 ~~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
.+....++||......--.++++++|++|.+++...+.+... ...+.+||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEE
Confidence 345567899987765544567999999999998764333222 36799999874
No 126
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=20.52 E-value=1.9e+02 Score=25.94 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=34.3
Q ss_pred ceEEEecCCceEEcc-CCCCCeEEEEEeeeEEEEEeCCC---eeeeEEEEecCCCCeee
Q 007606 390 LKPVLYVQECCIVKE-GDPICEMFFITQGTLLTTTTNGG---RNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~-Ge~~~~lyfI~~G~v~v~~~~~~---~~~~~~~~~l~~G~~fG 444 (596)
+....+.+|...-.. -...+++++|++|.+++...+++ .+. ....+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~--~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL--YSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCE--EEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeE--EEEEECCCCEEE
Confidence 345567888755322 23357999999999998775432 221 126799999874
No 127
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=20.48 E-value=2.1e+02 Score=25.18 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=30.0
Q ss_pred EEecCCceEEc--cCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 393 VLYVQECCIVK--EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 393 ~~~~kge~Ii~--~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
..+++|...-. -.....++++|++|.+.+.. +++. ..+.+||.+-
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~~-----~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQW-----HELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTEE-----EEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCEE-----EEeCCCCEEE
Confidence 44667665442 12234689999999999876 3332 5799999874
No 128
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=20.29 E-value=3.4e+02 Score=26.13 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=51.5
Q ss_pred ceEEEecCCceEEccCCCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeeechhhhccCCCCCCCCCCCcccEEEE
Q 007606 390 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 469 (596)
Q Consensus 390 ~~~~~~~kge~Ii~~Ge~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~s~~~~~~s~~si~A 469 (596)
.+...+.+|+....+... +..+.+++|...+.. ++.+ ..+.+||..---+ ...++.++
T Consensus 209 teV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~--~~q~-----~~L~~~DsLLIpa--------------~~~y~~~r 266 (286)
T 2qnk_A 209 TQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM--GGRR-----LSLAPDDSLLVLA--------------GTSYAWER 266 (286)
T ss_dssp EEEEEECSEEEEECCCSS-CEEEEEEESCEEEEE--TTEE-----EEECTTEEEEECT--------------TCCEEEEE
T ss_pred eEEEEEcCCccccccCcC-cEEEEEEcCceEEEE--CCeE-----EeccCCCEEEecC--------------CCeEEEEe
Confidence 445669999999988887 888999999997655 3332 5688887653222 24778999
Q ss_pred eceEEEEEEcH
Q 007606 470 VTNVEAFAINT 480 (596)
Q Consensus 470 ~e~~~ll~i~~ 480 (596)
.++|.++.+..
T Consensus 267 ~~gsv~L~I~~ 277 (286)
T 2qnk_A 267 TQGSVALSVTQ 277 (286)
T ss_dssp CTTCEEEEEEE
T ss_pred cCCeEEEEEEE
Confidence 99999998864
No 129
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=20.25 E-value=1.2e+02 Score=24.37 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCCCeEEEEEeeeEEEEEeCCCeeeeEEEEecCCCCeee
Q 007606 406 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 444 (596)
Q Consensus 406 e~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 444 (596)
...+++++|++|.+++...++.. ...+.+||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 34568999999999988744321 03589998764
Done!