Query 007609
Match_columns 596
No_of_seqs 307 out of 1526
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 12:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0797 Actin-related protein 100.0 4.8E-93 1E-97 736.0 22.5 536 1-580 16-615 (618)
2 PTZ00452 actin; Provisional 100.0 5.6E-67 1.2E-71 558.6 32.7 322 175-580 51-375 (375)
3 PTZ00466 actin-like protein; P 100.0 2.3E-66 4.9E-71 554.5 33.8 320 175-580 58-380 (380)
4 PTZ00281 actin; Provisional 100.0 3.2E-65 7E-70 546.0 32.9 322 175-580 52-376 (376)
5 KOG0679 Actin-related protein 100.0 9E-65 2E-69 512.4 25.2 355 174-579 55-425 (426)
6 PTZ00004 actin-2; Provisional 100.0 1.1E-63 2.4E-68 534.7 33.8 322 175-580 52-378 (378)
7 KOG0676 Actin and related prot 100.0 1.1E-63 2.5E-68 518.9 26.3 318 174-580 52-372 (372)
8 PTZ00280 Actin-related protein 100.0 1.5E-61 3.3E-66 524.4 32.7 328 175-578 53-408 (414)
9 PF00022 Actin: Actin; InterP 100.0 2.6E-62 5.5E-67 527.3 22.6 336 175-580 45-393 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 2.7E-58 6E-63 492.9 33.1 323 175-580 46-373 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.3E-57 2.9E-62 487.3 31.5 325 174-578 44-371 (371)
12 KOG0677 Actin-related protein 100.0 2.4E-57 5.2E-62 436.5 19.9 323 174-577 51-385 (389)
13 COG5277 Actin and related prot 100.0 3.3E-56 7.1E-61 478.9 26.5 359 174-580 52-444 (444)
14 KOG0680 Actin-related protein 100.0 4.9E-50 1.1E-54 396.4 24.2 328 185-580 51-399 (400)
15 KOG0678 Actin-related protein 100.0 8.5E-41 1.8E-45 331.3 7.7 328 174-577 57-407 (415)
16 KOG0681 Actin-related protein 100.0 5.9E-35 1.3E-39 306.0 18.6 353 191-584 80-644 (645)
17 PRK13930 rod shape-determining 100.0 1.1E-27 2.5E-32 252.7 21.9 272 175-553 46-327 (335)
18 PRK13927 rod shape-determining 100.0 9.5E-28 2.1E-32 253.3 20.8 271 176-553 44-323 (334)
19 TIGR00904 mreB cell shape dete 99.9 6.9E-26 1.5E-30 239.1 19.5 274 174-552 43-325 (333)
20 PRK13929 rod-share determining 99.9 6.2E-24 1.3E-28 224.3 18.1 263 176-551 43-323 (335)
21 PRK13928 rod shape-determining 99.9 3.7E-22 8E-27 211.0 17.5 271 175-553 41-322 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 9.5E-21 2.1E-25 197.1 16.1 270 174-551 38-318 (326)
23 COG1077 MreB Actin-like ATPase 99.6 5.4E-15 1.2E-19 149.4 14.8 271 174-551 45-328 (342)
24 TIGR02529 EutJ ethanolamine ut 99.4 5.1E-12 1.1E-16 127.3 18.6 135 194-361 28-165 (239)
25 PRK15080 ethanolamine utilizat 99.2 2.4E-10 5.3E-15 117.0 16.3 138 191-361 52-192 (267)
26 PRK09472 ftsA cell division pr 98.8 2.2E-08 4.8E-13 109.2 12.0 94 251-363 165-263 (420)
27 TIGR01174 ftsA cell division p 98.8 3.3E-08 7.2E-13 106.1 11.8 93 254-365 160-257 (371)
28 CHL00094 dnaK heat shock prote 98.8 1.6E-07 3.5E-12 107.4 17.1 91 241-332 138-236 (621)
29 PRK00290 dnaK molecular chaper 98.7 1.2E-07 2.5E-12 108.8 14.5 91 241-332 136-234 (627)
30 PTZ00400 DnaK-type molecular c 98.7 4.2E-07 9.2E-12 104.5 18.9 92 241-333 177-276 (663)
31 PLN03184 chloroplast Hsp70; Pr 98.7 3.4E-07 7.5E-12 105.4 17.9 91 241-332 175-273 (673)
32 TIGR01991 HscA Fe-S protein as 98.7 8.8E-08 1.9E-12 109.0 12.4 111 217-334 114-232 (599)
33 PTZ00186 heat shock 70 kDa pre 98.7 2.1E-07 4.5E-12 106.6 14.5 91 241-332 163-261 (657)
34 TIGR02350 prok_dnaK chaperone 98.7 2.3E-07 5.1E-12 105.7 14.3 91 241-332 133-232 (595)
35 PRK13411 molecular chaperone D 98.6 4E-07 8.8E-12 104.6 15.1 109 217-332 118-235 (653)
36 PTZ00009 heat shock 70 kDa pro 98.5 1.3E-06 2.7E-11 100.6 16.1 91 241-332 143-243 (653)
37 PRK05183 hscA chaperone protei 98.5 6.5E-07 1.4E-11 102.2 13.5 93 241-334 152-252 (616)
38 PRK01433 hscA chaperone protei 98.5 3.4E-07 7.4E-12 103.8 10.5 93 241-334 144-244 (595)
39 PRK13410 molecular chaperone D 98.5 1.5E-06 3.3E-11 99.9 14.7 109 217-332 120-236 (668)
40 PRK11678 putative chaperone; P 98.4 9.9E-06 2.2E-10 89.0 17.5 86 241-328 152-260 (450)
41 COG0849 ftsA Cell division ATP 98.3 4.1E-06 8.9E-11 90.2 10.9 91 256-364 168-263 (418)
42 PF00012 HSP70: Hsp70 protein; 98.3 4E-06 8.6E-11 95.7 11.3 92 241-333 138-238 (602)
43 COG0443 DnaK Molecular chapero 98.1 2E-05 4.2E-10 89.3 12.6 150 175-331 51-220 (579)
44 TIGR01175 pilM type IV pilus a 98.0 0.00011 2.3E-09 78.2 15.7 91 251-360 142-244 (348)
45 PF11104 PilM_2: Type IV pilus 97.5 0.00055 1.2E-08 72.7 10.3 126 214-360 87-236 (340)
46 PRK13917 plasmid segregation p 97.2 0.0021 4.5E-08 68.4 11.3 69 265-333 151-232 (344)
47 TIGR03739 PRTRC_D PRTRC system 96.8 0.007 1.5E-07 63.8 10.0 70 265-334 137-215 (320)
48 COG4972 PilM Tfp pilus assembl 96.3 0.22 4.8E-06 51.7 16.8 116 213-331 99-236 (354)
49 PRK10719 eutA reactivating fac 95.7 0.015 3.4E-07 63.2 5.7 109 213-325 64-183 (475)
50 COG4820 EutJ Ethanolamine util 95.5 0.005 1.1E-07 59.2 0.8 80 262-359 116-195 (277)
51 KOG0100 Molecular chaperones G 94.7 0.12 2.7E-06 54.6 8.5 111 241-360 175-298 (663)
52 PF06406 StbA: StbA protein; 91.9 0.24 5.2E-06 52.1 5.4 70 264-333 137-212 (318)
53 PF06277 EutA: Ethanolamine ut 90.4 1.4 3.1E-05 48.2 9.5 106 213-322 61-177 (473)
54 KOG0101 Molecular chaperones H 88.3 1.7 3.7E-05 49.3 8.4 89 241-330 146-244 (620)
55 KOG0104 Molecular chaperones G 87.3 3.2 7E-05 47.6 9.7 92 241-333 161-275 (902)
56 PF14450 FtsA: Cell division p 86.9 2.9 6.3E-05 37.3 7.6 59 289-365 2-71 (120)
57 PF02541 Ppx-GppA: Ppx/GppA ph 85.3 1.7 3.7E-05 44.8 6.1 70 256-328 75-152 (285)
58 KOG0103 Molecular chaperones H 85.1 7.7 0.00017 44.3 11.2 116 212-333 116-246 (727)
59 PF08841 DDR: Diol dehydratase 84.7 5.2 0.00011 41.0 8.8 89 254-360 97-191 (332)
60 PF01968 Hydantoinase_A: Hydan 81.6 1.8 3.8E-05 45.0 4.4 32 279-310 69-101 (290)
61 TIGR03123 one_C_unchar_1 proba 81.2 10 0.00022 40.0 9.8 90 215-311 36-153 (318)
62 KOG0102 Molecular chaperones m 70.6 38 0.00082 38.0 10.8 92 241-333 163-262 (640)
63 PRK11031 guanosine pentaphosph 62.7 11 0.00023 42.4 5.0 40 287-328 133-172 (496)
64 TIGR02261 benz_CoA_red_D benzo 61.7 3.2 7E-05 42.4 0.6 50 496-552 213-262 (262)
65 TIGR02259 benz_CoA_red_A benzo 60.8 3.8 8.3E-05 44.2 1.0 52 494-552 381-432 (432)
66 TIGR03706 exo_poly_only exopol 60.5 8.8 0.00019 40.0 3.7 41 286-328 125-165 (300)
67 PF08735 DUF1786: Putative pyr 56.7 47 0.001 33.8 7.9 46 263-309 138-190 (254)
68 TIGR03192 benz_CoA_bzdQ benzoy 55.3 3.8 8.2E-05 42.5 -0.1 67 473-553 221-287 (293)
69 TIGR03286 methan_mark_15 putat 54.9 3.7 8.1E-05 44.4 -0.2 68 472-553 335-402 (404)
70 COG0248 GppA Exopolyphosphatas 52.3 9.8 0.00021 42.5 2.5 70 256-328 92-169 (492)
71 COG1548 Predicted transcriptio 51.5 10 0.00022 38.4 2.2 23 286-308 130-152 (330)
72 COG4819 EutA Ethanolamine util 46.2 48 0.001 35.0 6.1 107 213-323 63-180 (473)
73 PRK10854 exopolyphosphatase; P 44.2 24 0.00053 39.7 4.1 40 286-327 137-176 (513)
74 TIGR00241 CoA_E_activ CoA-subs 38.9 78 0.0017 31.8 6.5 100 213-331 33-137 (248)
75 PRK13317 pantothenate kinase; 34.6 17 0.00036 37.6 0.8 73 472-553 200-273 (277)
76 TIGR03286 methan_mark_15 putat 33.6 1.5E+02 0.0033 32.3 7.8 100 213-328 177-285 (404)
77 COG1924 Activator of 2-hydroxy 32.9 14 0.0003 39.5 -0.1 44 498-553 346-389 (396)
78 COG0145 HyuA N-methylhydantoin 32.7 43 0.00092 39.1 3.7 32 279-310 269-302 (674)
79 PRK03011 butyrate kinase; Prov 30.6 29 0.00063 37.2 1.8 26 286-312 176-201 (358)
80 COG4012 Uncharacterized protei 29.6 86 0.0019 32.1 4.7 40 270-309 207-250 (342)
81 PF03702 UPF0075: Uncharacteri 29.0 36 0.00077 36.6 2.2 26 495-520 285-310 (364)
82 TIGR00241 CoA_E_activ CoA-subs 26.4 68 0.0015 32.2 3.6 42 497-550 206-247 (248)
83 TIGR02707 butyr_kinase butyrat 25.9 36 0.00079 36.4 1.6 51 262-313 146-200 (351)
84 PRK02308 uvsE putative UV dama 25.6 45 0.00099 34.9 2.2 14 16-29 142-158 (303)
85 PF00871 Acetate_kinase: Aceto 25.0 48 0.001 36.0 2.3 33 19-51 1-33 (388)
86 cd01732 LSm5 The eukaryotic Sm 24.7 42 0.00091 27.5 1.4 13 15-27 64-76 (76)
87 KOG2960 Protein involved in th 20.9 45 0.00097 33.1 0.9 82 489-578 70-155 (328)
88 PF01869 BcrAD_BadFG: BadF/Bad 20.5 2.1E+02 0.0045 29.0 5.8 84 213-309 40-129 (271)
No 1
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=4.8e-93 Score=736.02 Aligned_cols=536 Identities=40% Similarity=0.681 Sum_probs=399.3
Q ss_pred CCccccccchhhHhhcCCcEEEEcCCCceeeeeccCCCCCCccceeeEEecCCC-Cccccccccccccc----cchhhhh
Q 007609 1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQV-PKRNVVDQMLNSQV----TTSQHVE 75 (596)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~iVihpGS~~lriG~asd~~P~~ip~~iAr~~~~~-p~~~~~~~~~~~~~----~~~~~~~ 75 (596)
++|++.+-++|+..+++.|+||||+||+|||||+|+|.+|.|+||||||+.++. -++......+.+.. +.....+
T Consensus 16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap~sdr~~~~p~l~p~~~e~~n~~~~~e 95 (618)
T KOG0797|consen 16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAPVSDRMLNTPVLTPQHVEERNYNSAAE 95 (618)
T ss_pred CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCchhhhcccCcCCCccccccccccchhh
Confidence 479999999999999999999999999999999999999999999999998761 11112222222221 1112234
Q ss_pred HHHHHHHHHhhccCCcchHhhhcCCCCccccccccccccccccccceeecccccCCCCCCCccccccccccccccccccc
Q 007609 76 RERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESM 155 (596)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~e~~ 155 (596)
+.+.....++.|+.. +-++++++..||.. ....+||+--++|.+
T Consensus 96 f~~~lll~~s~lss~----------~~~kk~ri~v~~~~--------------------------q~lkn~n~~S~aetv 139 (618)
T KOG0797|consen 96 FLKILLLDESSLSSS----------ASRKKGRIDVYNQA--------------------------QTLKNDNVASPAETV 139 (618)
T ss_pred hhHHHHHhhhhhhhH----------HHhhcCcccccCch--------------------------HHhhcccccCccccC
Confidence 444433333444332 22345555555532 223466666667777
Q ss_pred CCCCC-cccccccccc------ccCcceEEccccccCCCCCCcEEEcceecCeeeec-CCCCccccHHHHHHHHHHHhhh
Q 007609 156 GQHRN-TDIKELNSSE------RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWILTE 227 (596)
Q Consensus 156 ~~~~~-~~~~~~~~~~------~~~~~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~-~~~s~~~~~~dle~Iw~~~l~~ 227 (596)
|..+. .-..+|.+.+ ....+-++|++|..+ .+|.|++||++|.||++ +|+|+|+.+.|+++||+|+|.+
T Consensus 140 P~ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i---~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e 216 (618)
T KOG0797|consen 140 PDPSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKI---SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLE 216 (618)
T ss_pred CCCCCCcCCCCccccccchHHHHHHHHHHhhhhhhcC---CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHH
Confidence 64332 1122221111 223455566777766 48999999999999997 7889999999999999999999
Q ss_pred hcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCe
Q 007609 228 KLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGV 307 (596)
Q Consensus 228 ~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~ 307 (596)
.|+|+++.+.+|++|||+||.|+++++++++.++|.+|||.++.++|+|+||+||+|++++||||||||+|+|+||+||.
T Consensus 217 ~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGv 296 (618)
T KOG0797|consen 217 KLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGV 296 (618)
T ss_pred hcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCcccccee-eecccCCCCCCC
Q 007609 308 ALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAV-VHSYEDGMPPGS 386 (596)
Q Consensus 308 ~l~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~-~~~~~~~~p~~~ 386 (596)
++++++++++|||+|||++|.++|++. .|| |+++++...+||.++++|||++|++..+++.++.. |..+++..| +
T Consensus 297 s~~ntri~L~YGGdDitr~f~~ll~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~--~ 372 (618)
T KOG0797|consen 297 SLPNTRIILPYGGDDITRCFLWLLRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPP--T 372 (618)
T ss_pred cccCceEEeccCCchHHHHHHHHHHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCc--c
Confidence 999999999999999999999999875 577 46778888999999999999999999877665422 333343334 5
Q ss_pred ceeeee---eecCCCCCCCCCcccCCCC--------CCCCCCCCCCCccccccCCccccCCC------------------
Q 007609 387 HKTRLI---ALNVPPMGLFYPKLLVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFPR------------------ 437 (596)
Q Consensus 387 ~k~~~~---~~~~aP~~lf~p~i~~~e~--------~~~p~~~~~~d~ed~~~d~~~~~~~~------------------ 437 (596)
.+|+|+ +.++|||+||+|.+|..+. +.+|.+.++.|++-.+.+++....+.
T Consensus 373 ~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~ 452 (618)
T KOG0797|consen 373 LKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRI 452 (618)
T ss_pred eeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccc
Confidence 567665 5789999999999997765 23333322222222222222221110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCc------------------cCCCCCccccCCHHHHHHHHHHhcCChhHHHHHhcCeE
Q 007609 438 RSDISDNFYPGINVGLPMWESYPV------------------LTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQ 499 (596)
Q Consensus 438 r~~~~E~lfp~~~g~~~~~~~~~~------------------~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIv 499 (596)
|-..+|..-.+..| ....+.+.. .-...+..-..+|+++|+.||..|...|.+++||++|+
T Consensus 453 ~~~l~~~~d~~Elg-~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil 531 (618)
T KOG0797|consen 453 RDQLPEKPDKEELG-VTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSIL 531 (618)
T ss_pred cccccccccchhhc-cccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHH
Confidence 00111111000000 000000000 00001111234788899999999988999999999999
Q ss_pred EEcCCCCcCChHHHHHHHHhhhCCC-CCCcceEEEcCCC--CCCceeEEeceeeeeccCCcccceeeHHHHHhcCcceee
Q 007609 500 LIGGVALTGGLIPAVEERVLHAIPS-NEAIDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGS 576 (596)
Q Consensus 500 LvGG~S~i~Gf~~RL~~eL~~~~p~-~~~~~~V~v~~~~--~dp~~~aW~GgSIla~L~sf~~~wItr~EYee~G~~il~ 576 (596)
++||+.++|||.+.||+++...+|+ ...++.|.|++++ |||++++||||+|||.|+..+++||++.||+.+|.|++.
T Consensus 532 ~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~ 611 (618)
T KOG0797|consen 532 LVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQ 611 (618)
T ss_pred hhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhh
Confidence 9999999999999999999998887 3346789999865 999999999999999999999999999999999999999
Q ss_pred eccC
Q 007609 577 GRKY 580 (596)
Q Consensus 577 rk~~ 580 (596)
.||+
T Consensus 612 ~k~~ 615 (618)
T KOG0797|consen 612 YKKY 615 (618)
T ss_pred hccc
Confidence 9998
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=5.6e-67 Score=558.61 Aligned_cols=322 Identities=21% Similarity=0.373 Sum_probs=273.5
Q ss_pred ceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHH
Q 007609 175 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 254 (596)
Q Consensus 175 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~v 254 (596)
++++|++|... ...+.|++||++|.+. |||++|.||+|+|.+.|+++++++ +||+++++++++..
T Consensus 51 ~~~iG~~~~~~--~~~~~l~~Pi~~G~I~---------dwd~~e~iw~~~f~~~l~v~p~~~----pvlitE~~~~~~~~ 115 (375)
T PTZ00452 51 EYYVGEEAQAK--RGVLAIKEPIQNGIIN---------SWDDIEIIWHHAFYNELCMSPEDQ----PVFMTDAPMNSKFN 115 (375)
T ss_pred ceEEChhhhcc--ccCcEEcccCcCCEEc---------CHHHHHHHHHHHHHhhcCCCcccC----ceeeecCCCCCHHH
Confidence 57899998653 4679999999999998 999999999999999999999998 79999999988887
Q ss_pred HH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHh
Q 007609 255 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 255 r~-l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~ 333 (596)
|+ ++|+|||.|++|++++..+++||+||+|++||||||+|++.|+|+||+||+++.++..++++||+++|++|.++|+.
T Consensus 116 Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~ 195 (375)
T PTZ00452 116 RERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQE 195 (375)
T ss_pred HHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHh
Confidence 75 99999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCcccCCCCCC
Q 007609 334 HQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYP 413 (596)
Q Consensus 334 ~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~~ 413 (596)
++. ++....+..++++|||++||++.+..+. ...+.. ......
T Consensus 196 ~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~e---~~~~~~-~~~~~~-------------------------- 238 (375)
T PTZ00452 196 LGY-------SLTEPHQRIIVKNIKERLCYTALDPQDE---KRIYKE-SNSQDS-------------------------- 238 (375)
T ss_pred cCC-------CCCCHHHHHHHHHHHHHhccccCcHHHH---HHHhhc-cCCcCc--------------------------
Confidence 642 3444567789999999999998541110 000000 000000
Q ss_pred CCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhcCChhHH
Q 007609 414 PPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 491 (596)
Q Consensus 414 ~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r 491 (596)
.| .++|+..+.++ +|+.++|.|| |...| .+..||+++|.+||.+| +.|+|
T Consensus 239 --------~y--~LPDg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gi~~~i~~si~~c-~~d~r 290 (375)
T PTZ00452 239 --------PY--KLPDGNILTIKSQKFRCSEILFQPKLIG-----------------LEVAGIHHLAYSSIKKC-DLDLR 290 (375)
T ss_pred --------eE--ECCCCCEEEeehHHhcCcccccChhhcC-----------------CCCCChhHHHHHHHHhC-CHhHH
Confidence 00 13344455555 7999999999 66544 35579999999999999 99999
Q ss_pred HHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccceeeHHHHHhcC
Q 007609 492 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNG 571 (596)
Q Consensus 492 ~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wItr~EYee~G 571 (596)
+.|++||+|+||+|++|||.+||++||+.++|... +|+|... .+|++++|+||||+|+|++|+++||||+||+|+|
T Consensus 291 ~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~---~v~v~~~-~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G 366 (375)
T PTZ00452 291 QELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQL---KIQVAAP-PDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQG 366 (375)
T ss_pred HHhhccEEEecccccccCHHHHHHHHHHHhCCCCc---eeEEecC-CCcceeEEECchhhcCccchhhhEeEHHHHhccC
Confidence 99999999999999999999999999999998764 4677653 5899999999999999999999999999999999
Q ss_pred cceeeeccC
Q 007609 572 IHIGSGRKY 580 (596)
Q Consensus 572 ~~il~rk~~ 580 (596)
.++++||||
T Consensus 367 ~~i~~~k~~ 375 (375)
T PTZ00452 367 PSIVHRKCF 375 (375)
T ss_pred cceeeeecC
Confidence 999999996
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2.3e-66 Score=554.53 Aligned_cols=320 Identities=18% Similarity=0.354 Sum_probs=271.7
Q ss_pred ceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHH
Q 007609 175 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 254 (596)
Q Consensus 175 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~v 254 (596)
+++||++|... ...+.++|||++|.+. ||+++|.||+|+| ++|+++++++ +||+++++++++..
T Consensus 58 ~~~vG~~~~~~--~~~~~l~~Pi~~G~v~---------dwd~~e~iw~~~f-~~l~v~~~~~----pvllte~~~~~~~~ 121 (380)
T PTZ00466 58 NIFVGNKAEEY--RGLLKVTYPINHGIIE---------NWNDMENIWIHVY-NSMKINSEEH----PVLLTEAPLNPQKN 121 (380)
T ss_pred CeEECchhhhh--CcCceeCccccCCeEC---------CHHHHHHHHHHHH-hhcccCCccC----eEEEecCccccHHH
Confidence 47899998764 3578899999999998 9999999999998 7899998888 79999999998888
Q ss_pred HH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHh
Q 007609 255 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 255 r~-l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~ 333 (596)
|+ ++|+|||.|++|+++++.+++||+||+|++||||||+|++.|+|+||+||+++.++..++++||+++|++|.++|+.
T Consensus 122 re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~ 201 (380)
T PTZ00466 122 KEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRK 201 (380)
T ss_pred HHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHh
Confidence 75 99999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCcccCCCCCC
Q 007609 334 HQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYP 413 (596)
Q Consensus 334 ~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~~ 413 (596)
++. .+....+.++++++||++|||+.+..... .... .+.....|
T Consensus 202 ~~~-------~~~~~~~~~~v~~iKe~~c~v~~d~~~e~---~~~~--~~~~~~~y------------------------ 245 (380)
T PTZ00466 202 NGH-------LFNTSAEMEVVKNMKENCCYVSFNMNKEK---NSSE--KALTTLPY------------------------ 245 (380)
T ss_pred cCC-------CCCcHHHHHHHHHHHHhCeEecCChHHHH---hhcc--ccccceeE------------------------
Confidence 653 23445678899999999999986411000 0000 00000000
Q ss_pred CCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhcCChhHH
Q 007609 414 PPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 491 (596)
Q Consensus 414 ~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r 491 (596)
.++|+..+.++ +|+.++|.|| |+..| .+..||+++|.+||.+| +.|.|
T Consensus 246 ------------~LPdg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gl~~~i~~sI~~c-~~d~r 295 (380)
T PTZ00466 246 ------------ILPDGSQILIGSERYRAPEVLFNPSILG-----------------LEYLGLSELIVTSITRA-DMDLR 295 (380)
T ss_pred ------------ECCCCcEEEEchHHhcCcccccCccccC-----------------CCCCCHHHHHHHHHHhC-ChhhH
Confidence 13344445555 7999999999 66544 35679999999999999 99999
Q ss_pred HHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccceeeHHHHHhcC
Q 007609 492 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNG 571 (596)
Q Consensus 492 ~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wItr~EYee~G 571 (596)
+.|++||+|+||+|++|||.+||++||..+.|... +|+|.. ..+|++++|+||||||++++|+++||||+||+|+|
T Consensus 296 ~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~---~v~v~~-~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G 371 (380)
T PTZ00466 296 RTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDI---TIRISA-PPERKFSTFIGGSILASLATFKKIWISKQEFDEYG 371 (380)
T ss_pred HHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCc---eEEEec-CCCCceeEEECchhhcCccchhhhEeEHHHHhhhC
Confidence 99999999999999999999999999999998764 456664 35899999999999999999999999999999999
Q ss_pred cceeeeccC
Q 007609 572 IHIGSGRKY 580 (596)
Q Consensus 572 ~~il~rk~~ 580 (596)
.++++||||
T Consensus 372 ~~iv~rk~~ 380 (380)
T PTZ00466 372 SVILHRKTF 380 (380)
T ss_pred cHhheeecC
Confidence 999999996
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=3.2e-65 Score=546.03 Aligned_cols=322 Identities=19% Similarity=0.366 Sum_probs=272.4
Q ss_pred ceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHH
Q 007609 175 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 254 (596)
Q Consensus 175 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~v 254 (596)
++++|++|+.. ...+.+++||++|.+. ||++++.||+|+|.+.|.++++++ +|||++++++++..
T Consensus 52 ~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------dwd~~e~l~~~~f~~~l~v~p~~~----pvllte~~~~~~~~ 116 (376)
T PTZ00281 52 DSYVGDEAQSK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKAN 116 (376)
T ss_pred CeEECchhhcc--ccCcEEeccCcCCEEc---------CHHHHHHHHHHHHHhhccCCCccC----eEEEecCCCCcHHH
Confidence 46899998753 4679999999999998 999999999999988999999988 79999999988887
Q ss_pred HH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHh
Q 007609 255 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 255 r~-l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~ 333 (596)
|+ ++++|||.|+||+++++.+++||+|++|++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|..
T Consensus 117 re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~ 196 (376)
T PTZ00281 117 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTE 196 (376)
T ss_pred HHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHh
Confidence 75 99999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCcccCCCCCC
Q 007609 334 HQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYP 413 (596)
Q Consensus 334 ~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~~ 413 (596)
++. ++.+..+.+++++|||++|||+.+.... ..... ..+....
T Consensus 197 ~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~~---~~~~~-~~~~~~~-------------------------- 239 (376)
T PTZ00281 197 RGY-------SFTTTAEREIVRDIKEKLAYVALDFEAE---MQTAA-SSSALEK-------------------------- 239 (376)
T ss_pred cCC-------CCCcHHHHHHHHHHHHhcEEecCCchHH---HHhhh-cCcccce--------------------------
Confidence 542 3444567889999999999998531100 00000 0000000
Q ss_pred CCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhcCChhHH
Q 007609 414 PPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 491 (596)
Q Consensus 414 ~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r 491 (596)
.| .++|+..+.++ ||+.++|.|| |...+ .+..||+++|.+||.+| +.|+|
T Consensus 240 --------~y--~LPdg~~i~i~~er~~~~E~LF~P~~~~-----------------~~~~gi~~~i~~sI~~~-~~d~r 291 (376)
T PTZ00281 240 --------SY--ELPDGQVITIGNERFRCPEALFQPSFLG-----------------MESAGIHETTYNSIMKC-DVDIR 291 (376)
T ss_pred --------eE--ECCCCCEEEeeHHHeeCcccccChhhcC-----------------CCCCCHHHHHHHHHHhC-ChhHH
Confidence 00 12344445555 7999999999 65543 35579999999999999 99999
Q ss_pred HHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccceeeHHHHHhcC
Q 007609 492 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNG 571 (596)
Q Consensus 492 ~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wItr~EYee~G 571 (596)
+.||+||+|+||+|+||||.+||++||+.+.|... +|+|... .+|++++|+||||+|++++|+++||||+||+|+|
T Consensus 292 ~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~---~v~v~~~-~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G 367 (376)
T PTZ00281 292 KDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTM---KIKIIAP-PERKYSVWIGGSILASLSTFQQMWISKEEYDESG 367 (376)
T ss_pred HHHHhhccccCccccCcCHHHHHHHHHHHhCCCCc---ceEEecC-CCCceeEEECcccccCcccHhhceeeHHHHhhhC
Confidence 99999999999999999999999999999998764 4677653 5899999999999999999999999999999999
Q ss_pred cceeeeccC
Q 007609 572 IHIGSGRKY 580 (596)
Q Consensus 572 ~~il~rk~~ 580 (596)
.++++||||
T Consensus 368 ~~~~~~k~~ 376 (376)
T PTZ00281 368 PSIVHRKCF 376 (376)
T ss_pred chheeeecC
Confidence 999999996
No 5
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=9e-65 Score=512.44 Aligned_cols=355 Identities=20% Similarity=0.364 Sum_probs=271.2
Q ss_pred cceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHH
Q 007609 174 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 253 (596)
Q Consensus 174 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 253 (596)
+.++||++|+..| ++++.+..||++|++. |||.++.+|+|+|.++|.++|.++ |+|+++++|+.+.
T Consensus 55 ~~~y~~~~ai~~p-r~gmEv~~~i~nGlv~---------dWD~~~~~w~~~~~~~Lk~~p~eh----P~litEp~wN~~~ 120 (426)
T KOG0679|consen 55 KGYYVDENAIHVP-RPGMEVKTPIKNGLVE---------DWDLFEMQWRYAYKNQLKVNPEEH----PVLITEPPWNTRA 120 (426)
T ss_pred cceEeechhccCC-CCCCeeccchhcCCcc---------cHHHHHHHHHHHHhhhhhcCcccc----ceeeecCCCCcHH
Confidence 4489999999987 5799999999999998 999999999999999999999998 7999999999999
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHH
Q 007609 254 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 254 vr~-l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~ 332 (596)
.|+ ++|++||.|+||+++++.+++|++|++|++|||||||||..|+|+||+||+++.+++++.++||+.|+..+.++|+
T Consensus 121 ~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~ 200 (426)
T KOG0679|consen 121 NREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLE 200 (426)
T ss_pred HHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHh
Confidence 885 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCC--CCCcc--ccc-cccccc-----HHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCC
Q 007609 333 HHQT--WPQIR--TDI-LTKAMD-----LLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLF 402 (596)
Q Consensus 333 ~~~~--~p~~~--~~~-l~~~~d-----~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf 402 (596)
.++. .|.|. .-. .....+ ....+++++.+|+..+..+ ++ ..|..+.++ +..-|
T Consensus 201 ~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v--------~~------e~ke~v~qv---~dtp~ 263 (426)
T KOG0679|consen 201 PKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRV--------YQ------EFKESVLQV---SDTPF 263 (426)
T ss_pred hcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHH--------HH------HHHHHHHhc---cCCCC
Confidence 7632 22111 000 000000 0112233333333221100 00 000000000 01111
Q ss_pred CCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHH
Q 007609 403 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 480 (596)
Q Consensus 403 ~p~i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~ 480 (596)
+.+... ..|+. +..+++++...++ +|+++||.|| |+...+++..... ........||++++.+
T Consensus 264 de~~~~----~i~~~------~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~-----~~~~n~~lG~~~lv~s 328 (426)
T KOG0679|consen 264 DEEVAA----QIPTK------HFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGA-----TSHINTMLGLPHLVYS 328 (426)
T ss_pred cccccc----cCCCc------cccCCCCcccccCcceeecchhhcCcchhccccccccC-----CCCCccccCchHHHHh
Confidence 111110 01111 1245677777888 8999999999 7654332211110 0111356799999999
Q ss_pred HHHhcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcC--CCCCCceeEEeceeeeeccCCcc
Q 007609 481 SILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQ--SRTNPTYVSWKGGAVLGILDFGR 558 (596)
Q Consensus 481 sI~~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~--~~~dp~~~aW~GgSIla~L~sf~ 558 (596)
||..| |.|+|..||+||+|+||+|+|+||.+||+.||+.+.|.. + ++++. ..++|++.+|+||||||+|++|+
T Consensus 329 Si~~c-DvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-r---lki~as~~t~eR~~~~WlGGSILASLgtFq 403 (426)
T KOG0679|consen 329 SINMC-DVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-R---LKIIASGHTVERRFQSWLGGSILASLGTFQ 403 (426)
T ss_pred hhccC-hHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-e---EEEEecCceeeehhhhhhhhHHHhccccHH
Confidence 99999 999999999999999999999999999999999999986 4 45555 45899999999999999999999
Q ss_pred cceeeHHHHHhcCc-ceeeecc
Q 007609 559 DAWIHREDWIRNGI-HIGSGRK 579 (596)
Q Consensus 559 ~~wItr~EYee~G~-~il~rk~ 579 (596)
+|||||+||||.|. +.+.|||
T Consensus 404 q~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 404 QLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred HHhhhHHHHHHhhhHHHHhhcC
Confidence 99999999999999 8899888
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.1e-63 Score=534.72 Aligned_cols=322 Identities=20% Similarity=0.373 Sum_probs=269.6
Q ss_pred ceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHH
Q 007609 175 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 254 (596)
Q Consensus 175 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~v 254 (596)
.+++|++|... ...+.+++||++|.+. ||++++.||+|+|.++|++.+.++ +||+++++++++..
T Consensus 52 ~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------d~d~~e~i~~~~~~~~l~v~~~~~----pvllte~~~~~~~~ 116 (378)
T PTZ00004 52 DCYVGDEAQDK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKAN 116 (378)
T ss_pred ceEECchhhcc--cccceEcccCcCCEEc---------CHHHHHHHHHHHHHhhcccCCccC----cceeecCCCCcHHH
Confidence 46789988653 3568999999999998 999999999999988999988888 79999999988777
Q ss_pred HH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHh
Q 007609 255 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 255 r~-l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~ 333 (596)
|+ ++++|||.|+|++++++.+++||+|++|++||||||+|++.|+|+||+||+++.++..++++||+++|++|.++|..
T Consensus 117 r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~ 196 (378)
T PTZ00004 117 REKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHE 196 (378)
T ss_pred HHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHh
Confidence 75 99999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCC-CceeeeeeecCCCCCCCCCcccCCCCC
Q 007609 334 HQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGLFYPKLLVPDVY 412 (596)
Q Consensus 334 ~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~lf~p~i~~~e~~ 412 (596)
++. .+....+..+++++||++|+|+.+-.+. ..... ..+.. ...|
T Consensus 197 ~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~~---~~~~~-~~~~~~~~~y----------------------- 242 (378)
T PTZ00004 197 RGT-------TFTTTAEKEIVRDIKEKLCYIALDFDEE---MGNSA-GSSDKYEESY----------------------- 242 (378)
T ss_pred cCC-------CCCcHHHHHHHHHHhhcceeecCCHHHH---Hhhhh-cCccccceEE-----------------------
Confidence 642 2334457789999999999998531100 00000 00000 0000
Q ss_pred CCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccc-cCCHHHHHHHHHHhcCChh
Q 007609 413 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEE-KIGLAEAVTSSILSTGRID 489 (596)
Q Consensus 413 ~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~-~~~L~~aI~~sI~~~~~~d 489 (596)
.++|+..+.++ +|+.++|.|| |+..+ .+ ..||+++|.+||.+| |.|
T Consensus 243 -------------~lPdg~~i~l~~er~~~~E~LF~P~~~~-----------------~~~~~gi~~~i~~sI~~~-~~d 291 (378)
T PTZ00004 243 -------------ELPDGTIITVGSERFRCPEALFQPSLIG-----------------KEEPPGIHELTFQSINKC-DID 291 (378)
T ss_pred -------------ECCCCCEEEEcHHHeeCcccccChhhcC-----------------ccccCChHHHHHHHHHhC-Chh
Confidence 12344445555 7999999999 65443 23 579999999999999 999
Q ss_pred HHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccceeeHHHHHh
Q 007609 490 LQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIR 569 (596)
Q Consensus 490 ~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wItr~EYee 569 (596)
+|+.|++||+|+||+|++|||.+||++||+.++|... +++|.. ..+|++++|+||||+|++++|+++||||+||+|
T Consensus 292 ~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~---~~~v~~-~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE 367 (378)
T PTZ00004 292 IRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTM---KIKVVA-PPERKYSVWIGGSILSSLPTFQQMWVTKEEYDE 367 (378)
T ss_pred HHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCc---cEEEec-CCCCceeEEECcccccCccchhhhEeEHHHHhh
Confidence 9999999999999999999999999999999999765 356654 358999999999999999999999999999999
Q ss_pred cCcceeeeccC
Q 007609 570 NGIHIGSGRKY 580 (596)
Q Consensus 570 ~G~~il~rk~~ 580 (596)
+|.++++||||
T Consensus 368 ~G~~~~~rk~~ 378 (378)
T PTZ00004 368 SGPSIVHRKCF 378 (378)
T ss_pred hCcceEEeecC
Confidence 99999999997
No 7
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-63 Score=518.87 Aligned_cols=318 Identities=24% Similarity=0.436 Sum_probs=269.6
Q ss_pred cceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHH
Q 007609 174 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 253 (596)
Q Consensus 174 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 253 (596)
++.+||++|.... +|+|||+||.++ ||++++.||+|+|++.|.+.|+++ |||+++++++++.
T Consensus 52 ~~~~vg~~a~~~~-----~l~~Pie~Giv~---------~wd~me~iw~~if~~~L~~~Pee~----pvllte~pl~p~~ 113 (372)
T KOG0676|consen 52 KDTYVGDEAESKR-----TLKYPIERGIVT---------DWDDMEKIWHHLFYSELLVAPEEH----PVLLTEPPLNPKA 113 (372)
T ss_pred cccccchhhhccc-----cccCcccccccc---------chHHHHHHHHHHHHHhhccCcccC----ceEeecCCCCchH
Confidence 4567899998752 889999999998 999999999999999999999998 7999999999988
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHH
Q 007609 254 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 254 vr~-l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~ 332 (596)
.|| |+++|||.|++|++++..++++ |++|++||||||+|++.|+++||+||++++++..++++||+|+|++|++.|.
T Consensus 114 nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~ 191 (372)
T KOG0676|consen 114 NREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLR 191 (372)
T ss_pred hHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHH
Confidence 886 9999999999999999776666 9999999999999999999999999999999999999999999999998887
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCcccCCCCC
Q 007609 333 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 412 (596)
Q Consensus 333 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 412 (596)
+.+ +++....++++++++||++||++.+ ... +... ..+. . .+.
T Consensus 192 ~~g-------~s~~~~~~~eIv~diKeklCyvald-~~~---------e~~~-~~~~-------~--------~l~---- 234 (372)
T KOG0676|consen 192 KRG-------YSFTTSAEFEIVRDIKEKLCYVALD-FEE---------EEET-ANTS-------S--------SLE---- 234 (372)
T ss_pred hcc-------cccccccHHHHHHHhHhhhcccccc-cch---------hhhc-cccc-------c--------ccc----
Confidence 754 2466677889999999999999862 111 1000 0000 0 000
Q ss_pred CCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhcCChhH
Q 007609 413 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 490 (596)
Q Consensus 413 ~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~ 490 (596)
.+|+ ++|+..+.++ +|+.++|.+| |+..| .+..||++++++||.+| +.|+
T Consensus 235 --------~~y~--lPDg~~i~i~~erf~~pE~lFqP~~~g-----------------~e~~gi~~~~~~sI~kc-d~dl 286 (372)
T KOG0676|consen 235 --------SSYE--LPDGQKITIGNERFRCPEVLFQPSLLG-----------------MESPGIHELTVNSIMKC-DIDL 286 (372)
T ss_pred --------cccc--CCCCCEEecCCcccccchhcCChhhcC-----------------CCCCchhHHHHHHHHhC-ChhH
Confidence 0111 2244444444 7999999999 66555 46789999999999999 9999
Q ss_pred HHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccceeeHHHHHhc
Q 007609 491 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRN 570 (596)
Q Consensus 491 r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wItr~EYee~ 570 (596)
|++||+||+|+||++++|||.+||++||+.+.|...+ ++|++. .++.+++|+||||+|+|++|+++||||+||+|.
T Consensus 287 rk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~---ikv~~p-p~r~~s~WlGgSIlaslstfq~~witk~eY~e~ 362 (372)
T KOG0676|consen 287 RKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIK---IKVIAP-PERKYSAWLGGSILASLSTFQQMWITKEEYEEH 362 (372)
T ss_pred hHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcc---eEEecC-cccccceecCceeEeecchHhhccccHHHHhhh
Confidence 9999999999999999999999999999999997764 566653 577899999999999999999999999999999
Q ss_pred CcceeeeccC
Q 007609 571 GIHIGSGRKY 580 (596)
Q Consensus 571 G~~il~rk~~ 580 (596)
|+++++||||
T Consensus 363 g~~~~~rk~f 372 (372)
T KOG0676|consen 363 GPSIIHRKCF 372 (372)
T ss_pred CCceeeeccC
Confidence 9999999997
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.5e-61 Score=524.38 Aligned_cols=328 Identities=23% Similarity=0.340 Sum_probs=265.4
Q ss_pred ceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHH
Q 007609 175 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 254 (596)
Q Consensus 175 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~v 254 (596)
++++|++|+..+ ..+.+++||++|.+. ||+++|.||+|+|.+.|++++.++ ++|+++++++++..
T Consensus 53 ~~~vG~ea~~~~--~~~~l~~Pi~~G~I~---------dwd~~e~l~~~~~~~~L~~~p~~~----~vllte~~~~~~~~ 117 (414)
T PTZ00280 53 DFYIGDEALAAS--KSYTLTYPMKHGIVE---------DWDLMEKFWEQCIFKYLRCEPEEH----YFILTEPPMNPPEN 117 (414)
T ss_pred CEEEcchhhhCc--CCcEEecCccCCEeC---------CHHHHHHHHHHHHHHhhccCCCCC----ceEEeeCCCCcHHH
Confidence 578999998764 579999999999998 999999999999989999999888 68999999888777
Q ss_pred HH-HHHHHHHhcCCCeEEEeehhhHHhhhc----------CCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHH
Q 007609 255 KE-MLSIVLRDLRFASAVVHQEGLAAVFGN----------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 323 (596)
Q Consensus 255 r~-l~eilfe~~gf~~v~~~~esvlA~fga----------G~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~di 323 (596)
|+ ++|+|||.|++|+++++.+++||+||+ |.++|||||+|++.|+|+||+||+++.++..++++||++|
T Consensus 118 Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~l 197 (414)
T PTZ00280 118 REYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDI 197 (414)
T ss_pred HHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHH
Confidence 75 999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCC-CceeeeeeecCCCCCCC
Q 007609 324 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGLF 402 (596)
Q Consensus 324 t~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~lf 402 (596)
|++|.++|+.++. ++....+.+++++|||++||+..+-.+ +...+.. .+.. ..++.+ |..
T Consensus 198 t~~L~~lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~---e~~~~~~-~~~~~~~~~~~------~d~-- 258 (414)
T PTZ00280 198 TNFIQQMLRERGE-------PIPAEDILLLAQRIKEKYCYVAPDIAK---EFEKYDS-DPKNHFKKYTA------VNS-- 258 (414)
T ss_pred HHHHHHHHHHcCC-------CCCcHHHHHHHHHHHHhcCcccCcHHH---HHHHhhc-CcccccceEEC------CCC--
Confidence 9999999976642 233335678999999999999864111 1111110 0100 000110 000
Q ss_pred CCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHH
Q 007609 403 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 480 (596)
Q Consensus 403 ~p~i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~ 480 (596)
. ...+..+.++ +|+.++|.|| |...+. ....||+++|.+
T Consensus 259 ---------------------~--~g~~~~i~l~~erf~~~E~LF~P~~~~~----------------~~~~gl~e~i~~ 299 (414)
T PTZ00280 259 ---------------------V--TKKPYTVDVGYERFLGPEMFFHPEIFSS----------------EWTTPLPEVVDD 299 (414)
T ss_pred ---------------------C--CCCccEEEechHHhcCcccccChhhcCC----------------ccCCCHHHHHHH
Confidence 0 0001123344 7999999999 654331 124599999999
Q ss_pred HHHhcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCC--------------CCcceEEEcCCCCCCceeEEe
Q 007609 481 SILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSN--------------EAIDMVEVLQSRTNPTYVSWK 546 (596)
Q Consensus 481 sI~~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~--------------~~~~~V~v~~~~~dp~~~aW~ 546 (596)
||.+| |.|+|++|++||+|+||+|+||||.+||++||+.++|.. ..+ +|+|... .++++++|+
T Consensus 300 sI~~~-~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~-~~~~~~~W~ 376 (414)
T PTZ00280 300 AIQSC-PIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPI-DVNVVSH-PRQRYAVWY 376 (414)
T ss_pred HHHhC-ChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCc-eEEEecC-CccceeEEE
Confidence 99999 899999999999999999999999999999999987531 112 5677653 478899999
Q ss_pred ceeeeeccCCcccceeeHHHHHhcCcceeeec
Q 007609 547 GGAVLGILDFGRDAWIHREDWIRNGIHIGSGR 578 (596)
Q Consensus 547 GgSIla~L~sf~~~wItr~EYee~G~~il~rk 578 (596)
||||||++++|+++||||+||+|+|.+++++|
T Consensus 377 GgSilas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 377 GGSMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred ChhhcccCcchhhheEEHHHHhccChHheeec
Confidence 99999999999999999999999999999987
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2.6e-62 Score=527.34 Aligned_cols=336 Identities=25% Similarity=0.440 Sum_probs=255.7
Q ss_pred ceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHH
Q 007609 175 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 254 (596)
Q Consensus 175 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~v 254 (596)
++++|++++. +...+.+++|+++|.++ +|++++.||+|+|.+.|.++++++ +||++++++.++..
T Consensus 45 ~~~~g~~~~~--~~~~~~~~~p~~~g~i~---------~~~~~e~i~~~~~~~~l~~~~~~~----~vll~~~~~~~~~~ 109 (393)
T PF00022_consen 45 DYYVGDEALS--PRSNLELRSPIENGVIV---------DWDALEEIWDYIFSNLLKVDPSDH----PVLLTEPPFNPRSQ 109 (393)
T ss_dssp SCEETHHHHH--TGTGEEEEESEETTEES---------SHHHHHHHHHHHHHTTT-SSGGGS----EEEEEESTT--HHH
T ss_pred eEEeeccccc--chhheeeeeeccccccc---------cccccccccccccccccccccccc----eeeeeccccCCchh
Confidence 3567877555 25689999999999998 999999999999988899988887 68888888877666
Q ss_pred H-HHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHh
Q 007609 255 K-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 255 r-~l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~ 333 (596)
| +++++|||.|+|++++++++++||+|++|.+||||||+|++.|+|+||+||+++.++..++++||+++|++|.++|+.
T Consensus 110 r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~ 189 (393)
T PF00022_consen 110 REKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKE 189 (393)
T ss_dssp HHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHh
Confidence 6 599999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC--CCCcc--------cccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCC
Q 007609 334 HQT--WPQIR--------TDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFY 403 (596)
Q Consensus 334 ~~~--~p~~~--------~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~ 403 (596)
++. .|.+. ...+....+..+++++|+++|+++.+...... ......+ ...+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~---~~~~~~~--~~~~~------------- 251 (393)
T PF00022_consen 190 RNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQE---EQASENP--EKSYE------------- 251 (393)
T ss_dssp T-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHH---HHHCSTT--TEEEE-------------
T ss_pred hccccccccccccccccccccccchhhhccchhccchhhhcccccccccc---ccccccc--ceecc-------------
Confidence 521 11110 11223345678999999999999975331000 0000000 00010
Q ss_pred CcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHH
Q 007609 404 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSS 481 (596)
Q Consensus 404 p~i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~s 481 (596)
++|+..+.++ +|+.++|.|| |...+... .....+..||+++|.+|
T Consensus 252 -----------------------lPdg~~i~~~~er~~~~E~LF~p~~~~~~~----------~~~~~~~~gL~~~I~~s 298 (393)
T PF00022_consen 252 -----------------------LPDGQTIILGKERFRIPEILFNPSLIGIDS----------ASEPSEFMGLPELILDS 298 (393)
T ss_dssp ------------------------TTSSEEEESTHHHHHHHTTTSGGGGTSSS----------TS---SSSCHHHHHHHH
T ss_pred -----------------------cccccccccccccccccccccccccccccc----------cccccccchhhhhhhhh
Confidence 1122222232 5778888888 54433100 00002346999999999
Q ss_pred HHhcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccce
Q 007609 482 ILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAW 561 (596)
Q Consensus 482 I~~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~w 561 (596)
|.+| +.|+|++|++||+|+||+|++|||.+||++||..+.|... +++|+..+.+|.+++|+||||+|+|++|+++|
T Consensus 299 i~~~-~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~---~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ 374 (393)
T PF00022_consen 299 ISKC-PIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSST---KVKVIAPPSDRQFAAWIGGSILASLSSFQSFW 374 (393)
T ss_dssp HHTS-TTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTS---TEEEE--T-TTTSHHHHHHHHHHTSGGGGGTS
T ss_pred hhcc-ccccccccccceEEecccccccchHHHHHHHhhhhhhccc---cceeccCchhhhhcccccceeeecccccccee
Confidence 9999 8999999999999999999999999999999999988765 45666532389999999999999999999999
Q ss_pred eeHHHHHhcCcceeeeccC
Q 007609 562 IHREDWIRNGIHIGSGRKY 580 (596)
Q Consensus 562 Itr~EYee~G~~il~rk~~ 580 (596)
|||+||+|+|+++++|||+
T Consensus 375 itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 375 ITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp EEHHHHHHHGGGGHHHHT-
T ss_pred eeHHHHhCcCcceeeecCC
Confidence 9999999999999999996
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=2.7e-58 Score=492.87 Aligned_cols=323 Identities=22% Similarity=0.407 Sum_probs=264.2
Q ss_pred ceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHH
Q 007609 175 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 254 (596)
Q Consensus 175 ~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~v 254 (596)
.+++|++|.... +.+.+++||++|.+. ||++++.||+++|.+.|+++++++ +|+++++.+.....
T Consensus 46 ~~~~G~~a~~~~--~~~~~~~P~~~G~i~---------d~~~~e~i~~~~~~~~l~~~~~~~----~vll~~p~~~~~~~ 110 (373)
T smart00268 46 DTFVGDEAQEKR--GGLELKYPIEHGIVE---------NWDDMEKIWDYTFFNELRVEPEEH----PVLLTEPPMNPKSN 110 (373)
T ss_pred ceEecchhhhcC--CCceecCCCcCCEEe---------CHHHHHHHHHHHHhhhcCCCCccC----eeEEecCCCCCHHH
Confidence 578899886543 456899999999998 999999999999988899988777 68888888776555
Q ss_pred H-HHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHh
Q 007609 255 K-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 255 r-~l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~ 333 (596)
| ++++++||.|+|++++++.++++|+||+|.++|||||||++.|+|+||+||+++.++..++++||+++|++|.++|+.
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~ 190 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSE 190 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHh
Confidence 5 599999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCC-CCCC-CceeeeeeecCCCCCCCCCcccCCCC
Q 007609 334 HQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDG-MPPG-SHKTRLIALNVPPMGLFYPKLLVPDV 411 (596)
Q Consensus 334 ~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~-~p~~-~~k~~~~~~~~aP~~lf~p~i~~~e~ 411 (596)
.+. .+....+.++++++||++|+++.+.... ....... .+.. ...+
T Consensus 191 ~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~---------------------- 238 (373)
T smart00268 191 RGY-------QFNSSAEFEIVREIKEKLCYVAEDFEKE---MKKARESSESSKLEKTY---------------------- 238 (373)
T ss_pred cCC-------CCCcHHHHHHHHHhhhheeeecCChHHH---HHHhhhcccccccceeE----------------------
Confidence 431 1223456789999999999998631100 0000000 0000 0000
Q ss_pred CCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhcCChh
Q 007609 412 YPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRID 489 (596)
Q Consensus 412 ~~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d 489 (596)
.++|+..+..+ +|+.++|.|| |+..+ .+..+|+++|.++|.+| |.|
T Consensus 239 --------------~lpdg~~~~~~~er~~~~E~lf~p~~~~-----------------~~~~~i~~~i~~~i~~~-~~d 286 (373)
T smart00268 239 --------------ELPDGNTIKVGNERFRIPEILFKPELIG-----------------LEQKGIHELVYESIQKC-DID 286 (373)
T ss_pred --------------ECCCCCEEEEChHHeeCchhcCCchhcC-----------------CCcCCHHHHHHHHHHhC-CHh
Confidence 12233333334 6889999999 54433 34569999999999999 899
Q ss_pred HHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccceeeHHHHHh
Q 007609 490 LQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIR 569 (596)
Q Consensus 490 ~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wItr~EYee 569 (596)
.|++|++||+|+||+|++|||.+||++||..+.|... +|++.. ..+|++++|+||||+|++++|+++||||+||+|
T Consensus 287 ~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~---~v~v~~-~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E 362 (373)
T smart00268 287 VRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL---KVKVIA-PPERKYSVWLGGSILASLSTFEDMWITKKEYEE 362 (373)
T ss_pred HHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc---eeEEec-CCCCccceEeCcccccCccchhhhEEEHHHHhh
Confidence 9999999999999999999999999999999998654 456664 357889999999999999999999999999999
Q ss_pred cCcceeeeccC
Q 007609 570 NGIHIGSGRKY 580 (596)
Q Consensus 570 ~G~~il~rk~~ 580 (596)
+|.++++||||
T Consensus 363 ~G~~i~~~k~~ 373 (373)
T smart00268 363 HGSQIVERKCF 373 (373)
T ss_pred hCcceEEeecC
Confidence 99999999997
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.3e-57 Score=487.28 Aligned_cols=325 Identities=24% Similarity=0.399 Sum_probs=264.6
Q ss_pred cceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHH
Q 007609 174 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 253 (596)
Q Consensus 174 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 253 (596)
+.+++|++|...... ++.+++|+++|.+. ||++++.+|+|+|.+.|.+++++. +|+++++.+..+.
T Consensus 44 ~~~~~G~~a~~~~~~-~~~~~~P~~~G~i~---------d~~~~e~~~~~~~~~~l~~~~~~~----~vvl~~p~~~~~~ 109 (371)
T cd00012 44 KDYFVGEEALEKRGL-GLELIYPIEHGIVV---------DWDDMEKIWDHLFFNELKVNPEEH----PVLLTEPPLNPKS 109 (371)
T ss_pred CceEEchhhhhCCCC-ceEEcccccCCEEe---------CHHHHHHHHHHHHHHhcCCCCCCC----ceEEecCCCCCHH
Confidence 457899999887644 79999999999998 999999999999988888887766 5777777776655
Q ss_pred HH-HHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHH
Q 007609 254 IK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 254 vr-~l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~ 332 (596)
.| +++++|||.++|++++++.+++||+||+|.++|||||||++.|+|+||+||+++.++..++++||+++|++|.++|+
T Consensus 110 ~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~ 189 (371)
T cd00012 110 NREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLR 189 (371)
T ss_pred HHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHH
Confidence 55 59999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCcccCCCCC
Q 007609 333 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 412 (596)
Q Consensus 333 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 412 (596)
.++. .+....+..+++++||++|+++.+...... ............+
T Consensus 190 ~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~---~~~~~~~~~~~~~----------------------- 236 (371)
T cd00012 190 ERGY-------ELNSSDEREIVRDIKEKLCYVALDIEEEQD---KSAKETSLLEKTY----------------------- 236 (371)
T ss_pred hcCC-------CccchhHHHHHHHHHHhheeecCCHHHHHH---hhhccCCccceeE-----------------------
Confidence 6642 234456788999999999999864211000 0000000000000
Q ss_pred CCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhcCChhH
Q 007609 413 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 490 (596)
Q Consensus 413 ~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~ 490 (596)
.++|+..+.++ +|+.++|.|| |...+ ....+|+++|.++|..| +.|.
T Consensus 237 -------------~lpd~~~i~~~~er~~~~E~lF~p~~~~-----------------~~~~~i~~~i~~~i~~~-~~~~ 285 (371)
T cd00012 237 -------------ELPDGRTIKVGNERFRAPEILFNPSLIG-----------------SEQVGISEAIYSSINKC-DIDL 285 (371)
T ss_pred -------------ECCCCeEEEEChHHhhChHhcCChhhcC-----------------CCcCCHHHHHHHHHHhC-CHhH
Confidence 11223333334 6899999999 54433 24579999999999999 8999
Q ss_pred HHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccceeeHHHHHhc
Q 007609 491 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRN 570 (596)
Q Consensus 491 r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wItr~EYee~ 570 (596)
|+.+++||+|+||+|++|||.+||++||..+.|.. +...+.+.. ..+|.+++|+|||++|++++|+++||||+||+|+
T Consensus 286 ~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~-~~~~~~~~~-~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~ 363 (371)
T cd00012 286 RKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS-KDTKVKVIA-PPERKYSVWLGGSILASLSTFQQLWITKEEYEEH 363 (371)
T ss_pred HHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc-cceEEEEcc-CCCccccEEeCchhhcCchhhhheEeeHHHHhhh
Confidence 99999999999999999999999999999999863 112355553 4689999999999999999999999999999999
Q ss_pred Ccceeeec
Q 007609 571 GIHIGSGR 578 (596)
Q Consensus 571 G~~il~rk 578 (596)
|.++++||
T Consensus 364 G~~~~~~k 371 (371)
T cd00012 364 GPSIVHRK 371 (371)
T ss_pred CchhEecC
Confidence 99999987
No 12
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=2.4e-57 Score=436.48 Aligned_cols=323 Identities=23% Similarity=0.431 Sum_probs=268.9
Q ss_pred cceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHH
Q 007609 174 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 253 (596)
Q Consensus 174 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 253 (596)
+++.|||||-.+. .-+.+.|||.+|.+. +|+||+.+|+|+|.++|.|+|++.+ +|+++++.++..
T Consensus 51 KD~mvGdeaselR--s~L~i~YPmeNGivr---------nwddM~h~WDytF~ekl~idp~~~K----iLLTePPmNP~k 115 (389)
T KOG0677|consen 51 KDLMVGDEASELR--SLLDINYPMENGIVR---------NWDDMEHVWDYTFGEKLKIDPTNCK----ILLTEPPMNPTK 115 (389)
T ss_pred hhheccchHHHHH--HHHhcCCcccccccc---------ChHHHHHHHHhhhhhhccCCCccCe----EEeeCCCCCccc
Confidence 6789999997663 567899999999998 9999999999999999999999984 899999999988
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHH
Q 007609 254 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 254 vr~-l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~ 332 (596)
.|+ |+|++||.+||.++|++-++|+++|+.|..||+|||.|.+.|+||||+||+++++-..+++++|+|+|+||.+||.
T Consensus 116 NREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl 195 (389)
T KOG0677|consen 116 NREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLL 195 (389)
T ss_pred cHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHH
Confidence 875 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCcccCCCCC
Q 007609 333 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 412 (596)
Q Consensus 333 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 412 (596)
.++ +.+++..|++.++++||++||++-+ ++. +..+...+ .-+. +
T Consensus 196 ~rG-------YafN~tADFETVR~iKEKLCYisYd-~e~-------e~kLalET--TvLv-----------------~-- 239 (389)
T KOG0677|consen 196 RRG-------YAFNHTADFETVREIKEKLCYISYD-LEL-------EQKLALET--TVLV-----------------E-- 239 (389)
T ss_pred hhc-------cccccccchHHHHHHHhhheeEeec-hhh-------hhHhhhhh--eeee-----------------e--
Confidence 776 3688899999999999999999853 110 00000000 0000 0
Q ss_pred CCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhcCChhH
Q 007609 413 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 490 (596)
Q Consensus 413 ~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~ 490 (596)
+| .++|+..+..+ |||.+||.|| |..+. .+..|+.++++++|+.+ ++|.
T Consensus 240 ---------~Y--tLPDGRvIkvG~ERFeAPE~LFqP~Li~-----------------VE~~G~aellF~~iQaa-DiD~ 290 (389)
T KOG0677|consen 240 ---------SY--TLPDGRVIKVGGERFEAPEALFQPHLIN-----------------VEGPGVAELLFNTIQAA-DIDI 290 (389)
T ss_pred ---------ee--ecCCCcEEEecceeccCchhhcCcceec-----------------cCCCcHHHHHHHHHHHh-ccch
Confidence 00 23455556665 8999999999 66543 46789999999999998 9999
Q ss_pred HHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCC------CCCCcc--eEEEcCCCCCCceeEEeceeeeecc-CCcccce
Q 007609 491 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIP------SNEAID--MVEVLQSRTNPTYVSWKGGAVLGIL-DFGRDAW 561 (596)
Q Consensus 491 r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p------~~~~~~--~V~v~~~~~dp~~~aW~GgSIla~L-~sf~~~w 561 (596)
|..||.+|+|+||+++.||+..||++||+++.- +..++. +|++-. +..+.+.+++||++||.+ ..-.++|
T Consensus 291 R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEd-PPrRKhMVflGGAVLA~imkD~d~fW 369 (389)
T KOG0677|consen 291 RSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIED-PPRRKHMVFLGGAVLAGIMKDKDEFW 369 (389)
T ss_pred HHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccC-CCccceeEEEchHHHHHHhcCCccce
Confidence 999999999999999999999999999988631 111112 445443 356789999999999997 5567999
Q ss_pred eeHHHHHhcCcceeee
Q 007609 562 IHREDWIRNGIHIGSG 577 (596)
Q Consensus 562 Itr~EYee~G~~il~r 577 (596)
+||+||+|.|.+++.+
T Consensus 370 ~skqeyqE~G~~~l~k 385 (389)
T KOG0677|consen 370 MSKQEYQEEGINVLNK 385 (389)
T ss_pred ecHHHHHhhhHHHHHh
Confidence 9999999999988764
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3.3e-56 Score=478.93 Aligned_cols=359 Identities=22% Similarity=0.361 Sum_probs=277.3
Q ss_pred cceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhh--hcCCCCCCCcccceeeecCCCCCh
Q 007609 174 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE--KLHIPRSERNLYSAILVLPESFDN 251 (596)
Q Consensus 174 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~--~L~i~~~d~~~y~~VLvip~~~~~ 251 (596)
++.++|+++....+...+++++|+++|.+. +|++++.+|+|+|.+ .+...+.++ ++++++++++.
T Consensus 52 ~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~---------~W~~~e~~w~~~~~~~~~~~~~~~~~----pllltep~~n~ 118 (444)
T COG5277 52 KDTYVGNEAQNDRDNSLLELRYPIENGIIL---------NWDAMEQIWDYTFFNKGDLLPSPEEH----PLLLTEPPLNP 118 (444)
T ss_pred cccccCchhhhccCCccceeecccccCccC---------CcHHHHHHHHHhhcchhhccCCCcCC----ceEEeccCCCc
Confidence 346788888776555689999999999998 999999999999988 577777888 79999999998
Q ss_pred HHHHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCc--eEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHH
Q 007609 252 REIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 328 (596)
Q Consensus 252 ~~vr~-l~eilfe~~gf~~v~~~~esvlA~fgaG~s--tg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~ 328 (596)
.+.|+ +++++||+|+|+++++..+++|++|+.|.+ +|||||+|++.|+|+||+||+++.+++.++++||+++|.+|.
T Consensus 119 ~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~ 198 (444)
T COG5277 119 PSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLK 198 (444)
T ss_pred HHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHH
Confidence 88885 999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccccccc---ccHHHHHHHHHhce-------eccCCccccceeeecccCCCCCCCceeeeeeecCCC
Q 007609 329 WTQRHHQTWPQIRTDILTKA---MDLLMLNRIKESYC-------EIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPP 398 (596)
Q Consensus 329 ~lL~~~~~~p~~~~~~l~~~---~d~~l~e~lKe~~c-------~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP 398 (596)
++|..... +.+.+.+... .++++++.+|+++| |+..+-.. ..+... ..+ ..+. .
T Consensus 199 ~lL~~~~~--~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~---~~~e~~-~~~--~~~~--------~ 262 (444)
T COG5277 199 KLLREKYP--PSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEE---EFEEEE-EKP--AEKS--------T 262 (444)
T ss_pred HHHhhccc--ccCCcccccccccccHHHHHHHHHhhccccccccchhhcchH---HHHHHh-hhh--hhhc--------c
Confidence 99987532 3344556655 78999999999999 44322000 000000 001 0000 0
Q ss_pred CCCCCCc---ccCCCCCCCCCCCCCCCccccccCCccccCC-C-CCCCCCCCC-CC--CCCCCCCCCC-----------C
Q 007609 399 MGLFYPK---LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-R-RSDISDNFY-PG--INVGLPMWES-----------Y 459 (596)
Q Consensus 399 ~~lf~p~---i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~-~-r~~~~E~lf-p~--~~g~~~~~~~-----------~ 459 (596)
.-.|.+. ....+. ...+++..+.++ + ||.+||.+| |. ..+ +..... .
T Consensus 263 ~~~~~~~~~~~~~~~~-------------~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~-l~~~~~~~~~~~~~~~~~ 328 (444)
T COG5277 263 ESTFQLSKETSIAKES-------------KELPDGEEIEFGNEERFKAPEILFKPELPISG-LEEAGKIDESKQELVAEN 328 (444)
T ss_pred cccccccchhcccccc-------------ccCCCCceEeechhhhhhcchhhcCCcccccc-ccccccchhhhhhhhhhc
Confidence 0000000 000011 123344455555 5 999999999 55 221 111000 0
Q ss_pred CccCCCCCccccCCHHHHHHHHHHhcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCC
Q 007609 460 PVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTN 539 (596)
Q Consensus 460 ~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~d 539 (596)
.............||+++|.+||..| +.|.|+.|++||+|+||+|++|||.+||+.||..+.|... .|.|.+. .|
T Consensus 329 ~~~~~~~~~~~~~gl~e~v~~si~~~-~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~---~v~v~~~-~~ 403 (444)
T COG5277 329 YEISPTNLGNDIAGLPELVYQSIQIC-DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIW---KVSVIPP-PD 403 (444)
T ss_pred cccccccccccccchHHHHHHHHHhc-cHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCC---ceeeecC-Cc
Confidence 00111112245678999999999999 8999999999999999999999999999999999998743 5677764 59
Q ss_pred CceeEEeceeeeeccCCcccceeeHHHHHhcCcceeeeccC
Q 007609 540 PTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 580 (596)
Q Consensus 540 p~~~aW~GgSIla~L~sf~~~wItr~EYee~G~~il~rk~~ 580 (596)
|.+.+|+||||||++++|+.+||||+||+|+|+++++++++
T Consensus 404 ~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 404 PSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred hhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 99999999999999999999999999999999999998875
No 14
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=4.9e-50 Score=396.44 Aligned_cols=328 Identities=20% Similarity=0.299 Sum_probs=256.6
Q ss_pred CCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhh-cCCCCCCCcccceeeecCCCCChHHHHH-HHHHHH
Q 007609 185 VSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEK-LHIPRSERNLYSAILVLPESFDNREIKE-MLSIVL 262 (596)
Q Consensus 185 ~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~-L~i~~~d~~~y~~VLvip~~~~~~~vr~-l~eilf 262 (596)
+.+...+..+.|+++|.+. +|+-...+|+++|.+. ++++.+++ .++++++-++-..+.+ +.|+||
T Consensus 51 c~D~ssL~y~rp~erGyLv---------nW~tq~~vWDy~f~~~~~~~~~~~~----~ivlTep~~~~psi~~~t~eilF 117 (400)
T KOG0680|consen 51 CKDISSLFYRRPHERGYLV---------NWDTQSQVWDYCFGNPGFDVEGKDH----NIVLTEPCMTFPSIQEHTDEILF 117 (400)
T ss_pred ccCccceEEeehhhcceeE---------eehhHHHHHHHHhcCCCcCcccCcc----eEEEecccccccchhhhHHHHHH
Confidence 3333456678999999999 9999999999999643 23444566 5888999998888876 999999
Q ss_pred HhcCCCeEEEeehhhHHhhh---cCC--------ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHH
Q 007609 263 RDLRFASAVVHQEGLAAVFG---NGL--------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 331 (596)
Q Consensus 263 e~~gf~~v~~~~esvlA~fg---aG~--------stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL 331 (596)
|+|+|.+++=...+.+++|- .+. ..++|||.|++.|+|+||.+|.....+++++++||+.+|.+|++.+
T Consensus 118 Eey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~i 197 (400)
T KOG0680|consen 118 EEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETI 197 (400)
T ss_pred HHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHh
Confidence 99999999999999998876 121 1689999999999999999999999999999999999999999998
Q ss_pred HhcCCCCCcccccccccccHHHHHHHHHhceeccCC---ccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCcc--
Q 007609 332 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEG---EIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKL-- 406 (596)
Q Consensus 332 ~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~---~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i-- 406 (596)
.-++ ++.+....+++++||.+|||+++ +++.. + ...+.. |... .++.|. |....
T Consensus 198 SyR~---------lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~---~--~k~~~~---~~~i--~YvLPD--F~T~k~G 256 (400)
T KOG0680|consen 198 SYRH---------LNVMDETYVVNEIKEDVCFVSQNFKEDMDIA---K--TKFQEN---KVMI--DYVLPD--FSTSKRG 256 (400)
T ss_pred hhhh---------hcccchhhhhhhhhhheEEechhhHHHHHHH---h--hccccc---eeEE--EEecCC--cccccce
Confidence 6442 34456678999999999999973 22110 0 100000 0000 011221 11100
Q ss_pred -cCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHH
Q 007609 407 -LVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 483 (596)
Q Consensus 407 -~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~ 483 (596)
..++..+ ...|.+.+.+. |||.+||.|| |+.++ ....||++||++||.
T Consensus 257 yvr~~~vk------------~~~d~qii~L~nErF~IPEilF~Psdi~-----------------I~q~GIpEAV~esl~ 307 (400)
T KOG0680|consen 257 YVRNEDVK------------LPEDEQIITLTNERFTIPEILFSPSDIG-----------------IQQPGIPEAVLESLS 307 (400)
T ss_pred eEecCCCC------------CCCCcceeeecccccccchhhcChhhcC-----------------cccCCchHHHHHHHH
Confidence 0000000 11233445455 8999999999 77665 567899999999999
Q ss_pred hcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccceee
Q 007609 484 STGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIH 563 (596)
Q Consensus 484 ~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wIt 563 (596)
.| |.+.|+.|+.||+++||++++|||.+||..||+.++|..+ .|+|.. +.||..-+|.||+-++.+++|+.+|||
T Consensus 308 ~~-Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~---~v~V~~-p~dp~~~~W~~g~~~~~~~~~~~~~it 382 (400)
T KOG0680|consen 308 ML-PEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADW---EVSVSV-PEDPITFAWEGGSEFAKTDSFEKAVIT 382 (400)
T ss_pred hC-HHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccc---eEEEec-CCCcceeeehhccccccCcchhcceec
Confidence 99 9999999999999999999999999999999999999987 457764 379999999999999999999999999
Q ss_pred HHHHHhcCcceeeeccC
Q 007609 564 REDWIRNGIHIGSGRKY 580 (596)
Q Consensus 564 r~EYee~G~~il~rk~~ 580 (596)
|+||+|+|.+++.+|.+
T Consensus 383 R~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 383 REDYEEHGPSWCTKKRF 399 (400)
T ss_pred HhhHhhcCchhhhhhcc
Confidence 99999999999988875
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=8.5e-41 Score=331.30 Aligned_cols=328 Identities=22% Similarity=0.309 Sum_probs=256.2
Q ss_pred cceEEccccccCCCCCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHH
Q 007609 174 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 253 (596)
Q Consensus 174 ~~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 253 (596)
-++++|++|+. ...|.|.|||+||.+. +|+.||++|+..+.++|..+|+|+ -.|+++++.+..+
T Consensus 57 ldf~ig~eal~---~~~ysl~ypiRhg~ve---------~wd~mer~~~q~ifkylr~ePedh----~fLlteppln~pe 120 (415)
T KOG0678|consen 57 LDFFIGDEALD---ATTYSLKYPIRHGQVE---------DWDLMERFWEQCIFKYLRAEPEDH----YFLLTEPPLNQPE 120 (415)
T ss_pred cceecccHHHh---hcccccccceeccccc---------cHHHHHHHHhhhhhhhhcCCcccc----eEEecCCCCCCch
Confidence 47999999998 3589999999999998 999999999999999999999998 4899999999999
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcC--------CceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHH
Q 007609 254 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG--------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 324 (596)
Q Consensus 254 vr~-l~eilfe~~gf~~v~~~~esvlA~fgaG--------~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit 324 (596)
.|+ +.+++||.|+++.+|++-++++|+-++= .-||+|||.|.+.|+|.||.||+++..+...++++|+|+|
T Consensus 121 nreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT 200 (415)
T KOG0678|consen 121 NREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 200 (415)
T ss_pred hhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchh
Confidence 887 9999999999999999999999986542 2489999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCC
Q 007609 325 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYP 404 (596)
Q Consensus 325 ~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p 404 (596)
.++.+||++++.+++ + ...++.++.+||++||+.++-+. ++..|..+ |.+..|+ ...+.+
T Consensus 201 ~fiQ~llRer~~~iP-----~--e~sl~tak~iKe~ycy~cPdivk---ef~k~d~e-p~K~ikq-~~~~~~-------- 260 (415)
T KOG0678|consen 201 YFIQQLLREREVGIP-----P--EQSLETAKAIKEKYCYTCPDIVK---EFAKYDRE-PAKWIKQ-YTGINV-------- 260 (415)
T ss_pred HHHHHHhhCCCCCCC-----h--HHhhhhhHHHHhhhcccCcHHHH---HHHHhccC-HHHHHHH-Hhccch--------
Confidence 999999988765432 1 13467899999999999875221 12222211 2111000 000000
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHH
Q 007609 405 KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 482 (596)
Q Consensus 405 ~i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI 482 (596)
+.. ....++.+ +||-.+|.+| |....+ .-..+|++.|-..|
T Consensus 261 --i~~-------------------~~~~vDvgyerFlgpEiff~Pe~a~~----------------d~~~~~~~~vd~~I 303 (415)
T KOG0678|consen 261 --ITG-------------------KKFVVDVGYERFLGPEIFFHPEFANP----------------DFLTPLSEVVDWVI 303 (415)
T ss_pred --hcC-------------------CceeecccHHhhcChhhhcCccccCC----------------ccCcchHHHhhhhh
Confidence 000 00112223 5777788887 433210 22457999999999
Q ss_pred HhcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCC------------CCcceEEEcCCCCCCceeEEeceee
Q 007609 483 LSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSN------------EAIDMVEVLQSRTNPTYVSWKGGAV 550 (596)
Q Consensus 483 ~~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~------------~~~~~V~v~~~~~dp~~~aW~GgSI 550 (596)
++| ++|.||-||.||++.||.+++.+|..||++.+..+.... ..+ .|+|+.. .-.++++|.|||+
T Consensus 304 q~~-pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~v-dvqvish-~~qr~avwfggs~ 380 (415)
T KOG0678|consen 304 QHC-PIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPV-DVQVLSH-LLQRTAVWFGGSK 380 (415)
T ss_pred hhC-CcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCc-eeehhhh-hhhhcceeccCcc
Confidence 999 999999999999999999999999999999987653210 012 4677753 3456899999999
Q ss_pred eeccCCcccceeeHHHHHhcCcceeee
Q 007609 551 LGILDFGRDAWIHREDWIRNGIHIGSG 577 (596)
Q Consensus 551 la~L~sf~~~wItr~EYee~G~~il~r 577 (596)
|++.+.|-..+=||+||+|+|++|++.
T Consensus 381 lastpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 381 LASTPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred ccCCcccccccCcchhhhhhChhhhhc
Confidence 999999999999999999999998763
No 16
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=5.9e-35 Score=305.95 Aligned_cols=353 Identities=20% Similarity=0.294 Sum_probs=254.9
Q ss_pred cEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCCe
Q 007609 191 YCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFAS 269 (596)
Q Consensus 191 ~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~-l~eilfe~~gf~~ 269 (596)
...+.|+.+..+. +|+.+|.|++|+| .+||+++.+ ..+|+++++..+++.+.|. |.++|||.+|||+
T Consensus 80 s~~rSPFd~nVvt---------Nwel~E~ilDY~F-~~LG~~~~~--idhPIilTE~laNP~~~R~~m~elLFE~YgvP~ 147 (645)
T KOG0681|consen 80 SSPRSPFDRNVVT---------NWELMEQILDYIF-GKLGVDGQG--IDHPIILTEALANPVYSRSEMVELLFETYGVPK 147 (645)
T ss_pred ccCCCCCcCCccc---------cHHHHHHHHHHHH-HhcCCCccC--CCCCeeeehhccChHHHHHHHHHHHHHHcCCcc
Confidence 4567899998887 9999999999999 689998865 3348999999999999885 9999999999999
Q ss_pred EEEeehhhHHhhh-cCC---ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHhcCCCCCcccccc
Q 007609 270 AVVHQEGLAAVFG-NGL---STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDIL 345 (596)
Q Consensus 270 v~~~~esvlA~fg-aG~---stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l 345 (596)
|.+.-.++.|+|- .|. .+|+||++|++.|+|.||.||..+-..+.++++||..++.||..||+.+ +|+ +
T Consensus 148 V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~K--yp~-----~ 220 (645)
T KOG0681|consen 148 VAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLK--YPF-----H 220 (645)
T ss_pred eeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhcc--Ccc-----c
Confidence 9999999999993 333 3699999999999999999999998889999999999999999999865 232 1
Q ss_pred cccccHHHHHHHHHhceeccCCc---ccc-----------ceeeeccc---CC----CCCCC-ceee------ee-----
Q 007609 346 TKAMDLLMLNRIKESYCEIKEGE---IDA-----------VAVVHSYE---DG----MPPGS-HKTR------LI----- 392 (596)
Q Consensus 346 ~~~~d~~l~e~lKe~~c~v~~~~---~~~-----------~~~~~~~~---~~----~p~~~-~k~~------~~----- 392 (596)
-+..++.-++.|+..+||++.+- +.. ......|. .+ +++.. .+-+ ++
T Consensus 221 ~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~ 300 (645)
T KOG0681|consen 221 LNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKI 300 (645)
T ss_pred hhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHH
Confidence 23467889999999999999641 110 00000000 00 11000 0000 00
Q ss_pred -ee----------------cCCCC---C------C-CCCcccCCCC----------------------------C---CC
Q 007609 393 -AL----------------NVPPM---G------L-FYPKLLVPDV----------------------------Y---PP 414 (596)
Q Consensus 393 -~~----------------~~aP~---~------l-f~p~i~~~e~----------------------------~---~~ 414 (596)
+. ..-+. . | .=|..+..+. . ..
T Consensus 301 ~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~ 380 (645)
T KOG0681|consen 301 NARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEE 380 (645)
T ss_pred HHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccc
Confidence 00 00000 0 0 0000011000 0 00
Q ss_pred CCC----CCC--------------------------------------------------------CC-----------c
Q 007609 415 PPR----SWF--------------------------------------------------------ND-----------Y 423 (596)
Q Consensus 415 p~~----~~~--------------------------------------------------------~d-----------~ 423 (596)
+.+ +|. .| |
T Consensus 381 ~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vY 460 (645)
T KOG0681|consen 381 EREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVY 460 (645)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHH
Confidence 000 000 00 0
Q ss_pred ccc-------cc------------C------------C------------ccccCC-CCCCCCCCCC-CCCCCCCCCCCC
Q 007609 424 EDM-------LE------------D------------T------------WHTDFP-RRSDISDNFY-PGINVGLPMWES 458 (596)
Q Consensus 424 ed~-------~~------------d------------~------------~~~~~~-~r~~~~E~lf-p~~~g~~~~~~~ 458 (596)
|+. ++ | . +.+.++ +|+.+||++| |+.+|
T Consensus 461 e~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG------- 533 (645)
T KOG0681|consen 461 EDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIG------- 533 (645)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeecccccc-------
Confidence 100 00 0 0 000123 5788899999 77766
Q ss_pred CCccCCCCCccccCCHHHHHHHHHHhcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCC
Q 007609 459 YPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRT 538 (596)
Q Consensus 459 ~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~ 538 (596)
.+.+||.+++-.++.+. +.|.+.+|.+||+||||.|++||+.+||+.||..+.|... .|+|.- .+
T Consensus 534 ----------~dQaGl~Ei~~~il~r~-p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS---~i~V~r-as 598 (645)
T KOG0681|consen 534 ----------IDQAGLAEIMDTILRRY-PHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGS---SINVVR-AS 598 (645)
T ss_pred ----------chhhhHHHHHHHHHHhC-chhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCC---ceEEEe-cC
Confidence 67899999999999998 8999999999999999999999999999999999999765 456663 47
Q ss_pred CCceeEEeceeeeeccCCcccceeeHHHHHhcCcceeeeccCCCcc
Q 007609 539 NPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSY 584 (596)
Q Consensus 539 dp~~~aW~GgSIla~L~sf~~~wItr~EYee~G~~il~rk~~~~~~ 584 (596)
||...+|+|||.+|.-.+|..-||||+||+|.|...+.+.+..-.|
T Consensus 599 dP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n~~ 644 (645)
T KOG0681|consen 599 DPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASNIY 644 (645)
T ss_pred CcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999988877665433
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=1.1e-27 Score=252.68 Aligned_cols=272 Identities=18% Similarity=0.192 Sum_probs=193.6
Q ss_pred ceEEccccccCCC--CCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChH
Q 007609 175 EFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 252 (596)
Q Consensus 175 ~~~vGeeAl~~~~--~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~ 252 (596)
.++||++|..... ..++.+.+||++|.+. +|++++.+|++++++.+...+.+.+ .++++.|.+.+.
T Consensus 46 ~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~e~ll~~~~~~~~~~~~~~~~---~vvit~P~~~~~ 113 (335)
T PRK13930 46 VLAVGEEAKEMLGRTPGNIEAIRPLKDGVIA---------DFEATEAMLRYFIKKARGRRFFRKP---RIVICVPSGITE 113 (335)
T ss_pred EEEEcHHHHHhhhcCCCCeEEeecCCCCeEc---------CHHHHHHHHHHHHHHHhhcccCCCC---cEEEEECCCCCH
Confidence 4689999876532 2468899999999998 9999999999999554443233222 567776666666
Q ss_pred HHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHH
Q 007609 253 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 327 (596)
Q Consensus 253 ~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l 327 (596)
..|+.+..+||.+|++.++++++++||+|++|. .+++|||+|++.|+|++|.+|.++. ...+++||+++|+.|
T Consensus 114 ~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l 191 (335)
T PRK13930 114 VERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAI 191 (335)
T ss_pred HHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHH
Confidence 666767668999999999999999999999998 4689999999999999999999875 356899999999999
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeee--cccCCCCCCCceeeeeeecCCCCCCCCCc
Q 007609 328 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGLFYPK 405 (596)
Q Consensus 328 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~lf~p~ 405 (596)
.+++..+.. + ..+.+.++++|+++|++..+......... ....+.|.
T Consensus 192 ~~~l~~~~~--------~--~~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 240 (335)
T PRK13930 192 VQYVRRKYN--------L--LIGERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPK--------------------- 240 (335)
T ss_pred HHHHHHHhC--------C--CCCHHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCe---------------------
Confidence 998865411 1 13457899999999988653110000000 00000000
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhc
Q 007609 406 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 485 (596)
Q Consensus 406 i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~~r~~~~E~lfp~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~ 485 (596)
.+.++ +....|.+|+. ..++.+.|.++|.+|
T Consensus 241 --------------------------~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~ 271 (335)
T PRK13930 241 --------------------------TIEIS-SEEVREALAEP----------------------LQQIVEAVKSVLEKT 271 (335)
T ss_pred --------------------------eEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC
Confidence 00000 00111223221 236889999999998
Q ss_pred CChhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeec
Q 007609 486 GRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 553 (596)
Q Consensus 486 ~~~d~r~~L~~n-IvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~ 553 (596)
+.+.+++++.| |+|+||+|++|||.+||++++.. +|.+. .+|..++=.||++++.
T Consensus 272 -~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~---------~v~~~---~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 272 -PPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL---------PVHIA---EDPLTCVARGTGKALE 327 (335)
T ss_pred -CHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHHh
Confidence 88999999998 99999999999999999999852 22332 2455666678877763
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=9.5e-28 Score=253.30 Aligned_cols=271 Identities=18% Similarity=0.208 Sum_probs=193.1
Q ss_pred eEEccccccCCC--CCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHH
Q 007609 176 FICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 253 (596)
Q Consensus 176 ~~vGeeAl~~~~--~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 253 (596)
++||++|.+... ..++.+.+||++|.+. +|+.++.+|+++|.+.+.. ..+++ .++++.|.+.+..
T Consensus 44 ~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~ll~~~~~~~~~~-~~~~~---~~vi~vP~~~~~~ 110 (334)
T PRK13927 44 LAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFDVTEKMLKYFIKKVHKN-FRPSP---RVVICVPSGITEV 110 (334)
T ss_pred EEecHHHHHHhhcCCCCEEEEecCCCCeec---------CHHHHHHHHHHHHHHHhhc-cCCCC---cEEEEeCCCCCHH
Confidence 578888876532 2568899999999998 9999999999999877766 44443 4666656655555
Q ss_pred HHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEe-eCCeecccCcEEecchHHHHHHHH
Q 007609 254 IKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISRCL 327 (596)
Q Consensus 254 vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV-~dG~~l~~s~~~l~~GG~dit~~l 327 (596)
.|++++.+|+.+|++.++++++++||+|++|. +.++|||+|+++|+|++| .+|++...+ .++||+++|+.|
T Consensus 111 ~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l 187 (334)
T PRK13927 111 ERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAI 187 (334)
T ss_pred HHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHH
Confidence 56799999999999999999999999999997 457999999999999999 788887654 479999999999
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCccc
Q 007609 328 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLL 407 (596)
Q Consensus 328 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~ 407 (596)
.+++.... .+ ..+...++++|+++|++..++-.. . ..+...... .+ .|
T Consensus 188 ~~~l~~~~--------~~--~~~~~~ae~iK~~~~~~~~~~~~~--~--------------~~~~~~~~~-~~--~~--- 235 (334)
T PRK13927 188 INYVRRNY--------NL--LIGERTAERIKIEIGSAYPGDEVL--E--------------MEVRGRDLV-TG--LP--- 235 (334)
T ss_pred HHHHHHHh--------Cc--CcCHHHHHHHHHHhhccCCCCCCc--e--------------EEEeCcccC-CC--CC---
Confidence 99886431 11 135578999999999876421000 0 000000000 00 00
Q ss_pred CCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhcCC
Q 007609 408 VPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGR 487 (596)
Q Consensus 408 ~~e~~~~p~~~~~~d~ed~~~d~~~~~~~~r~~~~E~lfp~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~ 487 (596)
+ .+.++ |....|.+++. ..++.++|.++|.+| +
T Consensus 236 ---------------------~--~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~-~ 268 (334)
T PRK13927 236 ---------------------K--TITIS-SNEIREALQEP----------------------LSAIVEAVKVALEQT-P 268 (334)
T ss_pred ---------------------e--EEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHHC-C
Confidence 0 00000 00111223221 236899999999999 7
Q ss_pred hhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeec
Q 007609 488 IDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 553 (596)
Q Consensus 488 ~d~r~~L~~n-IvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~ 553 (596)
.+.+++++.+ |+|+||+|++|||.+||++++.. +|.+. .+|..++=.||++++.
T Consensus 269 ~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~---------~v~~~---~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 269 PELAADIVDRGIVLTGGGALLRGLDKLLSEETGL---------PVHVA---EDPLTCVARGTGKALE 323 (334)
T ss_pred chhhhhhhcCCEEEECchhhhhHHHHHHHHHHCC---------CcEec---CCHHHHHHHHHHHHHh
Confidence 8888899975 99999999999999999999841 23443 3566677778877753
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.94 E-value=6.9e-26 Score=239.07 Aligned_cols=274 Identities=18% Similarity=0.167 Sum_probs=195.6
Q ss_pred cceEEccccccCCC--CCCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCCh
Q 007609 174 REFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDN 251 (596)
Q Consensus 174 ~~~~vGeeAl~~~~--~~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~ 251 (596)
+-++||++|.+... ..++.+.+||++|.+. +|+.++.+|+|+|.+.+.......+ +++++.|.+.+
T Consensus 43 ~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~~~~~~l~~~~~~~~~~~~---~~vitvP~~~~ 110 (333)
T TIGR00904 43 SILAVGHEAKEMLGKTPGNIVAIRPMKDGVIA---------DFEVTEKMIKYFIKQVHSRKSFFKP---RIVICVPSGIT 110 (333)
T ss_pred eEEEEhHHHHHhhhcCCCCEEEEecCCCCEEE---------cHHHHHHHHHHHHHHHhcccccCCC---cEEEEeCCCCC
Confidence 34889999988632 2689999999999998 9999999999999876654322222 46666666555
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEe-eCCeecccCcEEecchHHHHHH
Q 007609 252 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISR 325 (596)
Q Consensus 252 ~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV-~dG~~l~~s~~~l~~GG~dit~ 325 (596)
...|+.++.+|+.+|++.++++.+++||+|++|. .+++|||+|++.|+|++| ++|+++..+ .++||+++|+
T Consensus 111 ~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~ 187 (333)
T TIGR00904 111 PVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDE 187 (333)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHH
Confidence 5556778889999999999999999999999998 678999999999999999 888877653 4899999999
Q ss_pred HHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCc
Q 007609 326 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 405 (596)
Q Consensus 326 ~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~ 405 (596)
.|.+++.... .+ ..+.+.++++|+++|++..+..... ... . .+ .+.. + -.|
T Consensus 188 ~l~~~l~~~~--------~~--~~~~~~ae~lK~~l~~~~~~~~~~~-~~~-~-~~-~~~~--~------~~~------- 238 (333)
T TIGR00904 188 AIINYIRRTY--------NL--LIGEQTAERIKIEIGSAYPLNDEPR-KME-V-RG-RDLV--T------GLP------- 238 (333)
T ss_pred HHHHHHHHHh--------cc--cCCHHHHHHHHHHHhcccccccccc-cee-e-cC-cccc--C------CCC-------
Confidence 9998876431 11 2345789999999998754200000 000 0 00 0000 0 000
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhc
Q 007609 406 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 485 (596)
Q Consensus 406 i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~~r~~~~E~lfp~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~ 485 (596)
++..+ . +..+.|.+|+. ..++.+.|.+++..|
T Consensus 239 -----------------------~~~~i--~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~ 270 (333)
T TIGR00904 239 -----------------------RTIEI--T-SVEVREALQEP----------------------VNQIVEAVKRTLEKT 270 (333)
T ss_pred -----------------------eEEEE--C-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC
Confidence 00000 0 11222333321 236889999999999
Q ss_pred CChhHHHHHhc-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeee
Q 007609 486 GRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 552 (596)
Q Consensus 486 ~~~d~r~~L~~-nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla 552 (596)
+.+.+.++++ +|+|+||+|++|||.+||++++.. .|.+. .+|..++=+||++++
T Consensus 271 -~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~---------~v~~~---~~P~~~va~Ga~~~~ 325 (333)
T TIGR00904 271 -PPELAADIVERGIVLTGGGALLRNLDKLLSKETGL---------PVIVA---DDPLLCVAKGTGKAL 325 (333)
T ss_pred -CchhhhhhccCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CChHHHHHHHHHHHH
Confidence 8899999997 799999999999999999999852 22332 356777778888775
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.91 E-value=6.2e-24 Score=224.27 Aligned_cols=263 Identities=17% Similarity=0.229 Sum_probs=185.1
Q ss_pred eEEccccccCCCC--CCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhh---hcCCCCCCCcccceeeecCCCC-
Q 007609 176 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE---KLHIPRSERNLYSAILVLPESF- 249 (596)
Q Consensus 176 ~~vGeeAl~~~~~--~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~---~L~i~~~d~~~y~~VLvip~~~- 249 (596)
++||++|.....+ ++..+.+||++|.+. +|+.++.+|++++.+ .|+...... .++|+.|.+
T Consensus 43 ~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~---------d~d~~~~~l~~~~~~~~~~l~~~~~~~----~vvitvP~~~ 109 (335)
T PRK13929 43 LAIGTEAKNMIGKTPGKIVAVRPMKDGVIA---------DYDMTTDLLKQIMKKAGKNIGMTFRKP----NVVVCTPSGS 109 (335)
T ss_pred EEeCHHHHHhhhcCCCcEEEEecCCCCccC---------CHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEEEcCCCC
Confidence 6899999876422 578899999999997 999999999999973 566654333 466665555
Q ss_pred ChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcC-----CceEEEEEeCCCceEEEEe-eCCeecccCcEEecchHHHH
Q 007609 250 DNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDI 323 (596)
Q Consensus 250 ~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG-----~stg~VVDiGa~~TsV~pV-~dG~~l~~s~~~l~~GG~di 323 (596)
+..+.+.+.+ +++.+|++.++++.+++||++++| ..+++|||+|+++|+|++| ++|++... .+++||+++
T Consensus 110 ~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~i 185 (335)
T PRK13929 110 TAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQL 185 (335)
T ss_pred CHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHHH
Confidence 4444334666 899999999999999999999998 3579999999999999999 66666543 368999999
Q ss_pred HHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeee--cccCCCCCCCceeeeeeecCCCCCC
Q 007609 324 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGL 401 (596)
Q Consensus 324 t~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~l 401 (596)
|+.|.+.+.... ++. .+...+|++|+++|++..+..+...... .+..++|.
T Consensus 186 d~~l~~~l~~~~--------~~~--~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~----------------- 238 (335)
T PRK13929 186 DEDIVSFVRKKY--------NLL--IGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPK----------------- 238 (335)
T ss_pred HHHHHHHHHHHh--------CcC--cCHHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCe-----------------
Confidence 999998886431 121 3457899999999987532100000000 00000110
Q ss_pred CCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCC--CCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHH
Q 007609 402 FYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSD--ISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAV 478 (596)
Q Consensus 402 f~p~i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~-~r~~--~~E~lfp~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI 478 (596)
.+.+. +++. +.|. ...+.++|
T Consensus 239 ------------------------------~i~i~~~~~~~~i~~~--------------------------l~~i~~~i 262 (335)
T PRK13929 239 ------------------------------TITLESKEIQGAMRES--------------------------LLHILEAI 262 (335)
T ss_pred ------------------------------EEEEcHHHHHHHHHHH--------------------------HHHHHHHH
Confidence 00000 0000 0111 12488999
Q ss_pred HHHHHhcCChhHHHHHhc-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeee
Q 007609 479 TSSILSTGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 551 (596)
Q Consensus 479 ~~sI~~~~~~d~r~~L~~-nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIl 551 (596)
.+++.+| +.+.+.++++ +|+|+||+|++|||.+||++++.. | |.+. .+|..++=+|+...
T Consensus 263 ~~~L~~~-~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~--~-------v~~~---~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 263 RATLEDC-PPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV--P-------VHVA---ANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHhC-CcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC--C-------ceeC---CCHHHHHHHHHHHH
Confidence 9999999 8899999998 699999999999999999999952 1 2332 35666676775544
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.88 E-value=3.7e-22 Score=210.98 Aligned_cols=271 Identities=18% Similarity=0.201 Sum_probs=190.8
Q ss_pred ceEEccccccCCCC--CCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCC-CCCCcccceeeecCCCCCh
Q 007609 175 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILVLPESFDN 251 (596)
Q Consensus 175 ~~~vGeeAl~~~~~--~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~-~~d~~~y~~VLvip~~~~~ 251 (596)
-+.+|++|.++... .++.+.+||++|.+. +|+.++.+|+|++. ++... ..+.+ .++++.|.+..
T Consensus 41 i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~---------d~~~~~~~l~~~~~-~~~~~~~~~~p---~~vitvP~~~~ 107 (336)
T PRK13928 41 VLAVGEEARRMVGRTPGNIVAIRPLRDGVIA---------DYDVTEKMLKYFIN-KACGKRFFSKP---RIMICIPTGIT 107 (336)
T ss_pred EEEecHHHHHhhhcCCCCEEEEccCCCCeEe---------cHHHHHHHHHHHHH-HHhccCCCCCC---eEEEEeCCCCC
Confidence 35899999887432 578899999999997 99999999999994 44332 23332 25555555544
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHH
Q 007609 252 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 326 (596)
Q Consensus 252 ~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~ 326 (596)
...|+.++.+++.+|++.+.++.+++||+|++|. +.++|||+|+++|+|++|.+|.++.. ..+++||+++|+.
T Consensus 108 ~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~ 185 (336)
T PRK13928 108 SVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEA 185 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHH
Confidence 4556799999999999999999999999999997 67999999999999999999876644 3689999999999
Q ss_pred HHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccceeee--cccCCCCCCCceeeeeeecCCCCCCCCC
Q 007609 327 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGLFYP 404 (596)
Q Consensus 327 l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~lf~p 404 (596)
|.+.+..+. .+ ..+...+|++|+++|.+............ ....+.|.. ..
T Consensus 186 i~~~l~~~~--------~~--~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~---~~-------------- 238 (336)
T PRK13928 186 IIRYIRKKY--------KL--LIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKT---IT-------------- 238 (336)
T ss_pred HHHHHHHHh--------ch--hcCHHHHHHHHHHhcccccccCCcEEEEecccccCCCceE---EE--------------
Confidence 998876431 11 13446799999999876432100000000 000000000 00
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHh
Q 007609 405 KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILS 484 (596)
Q Consensus 405 ~i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~~r~~~~E~lfp~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~ 484 (596)
+. |....|.+++ -...+.+.|.+++..
T Consensus 239 ------------------------------i~-~~~~~eii~~----------------------~~~~i~~~i~~~l~~ 265 (336)
T PRK13928 239 ------------------------------VT-SEEIREALKE----------------------PVSAIVQAVKSVLER 265 (336)
T ss_pred ------------------------------EC-HHHHHHHHHH----------------------HHHHHHHHHHHHHHh
Confidence 00 0000111111 123588889999999
Q ss_pred cCChhHHHHHhc-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeec
Q 007609 485 TGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 553 (596)
Q Consensus 485 ~~~~d~r~~L~~-nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~ 553 (596)
+ +.+.+.+++. +|+|+||+|++||+.++|++++.. .|.+. .+|..++=+||++++.
T Consensus 266 ~-~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~---------~v~~~---~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 266 T-PPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV---------PVYIA---EDPISCVALGTGKMLE 322 (336)
T ss_pred C-CccccHhhcCCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHHh
Confidence 8 7888888998 799999999999999999999852 23333 3677888899888753
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.85 E-value=9.5e-21 Score=197.14 Aligned_cols=270 Identities=19% Similarity=0.294 Sum_probs=179.0
Q ss_pred cceEEccccccCCCC--CCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeee-cCCCCC
Q 007609 174 REFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILV-LPESFD 250 (596)
Q Consensus 174 ~~~~vGeeAl~~~~~--~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLv-ip~~~~ 250 (596)
+-+.+|++|..+-.+ .++.+.+|+++|.+. |++..+.+++|.+++.++-..-..+ .|++ +|.-.+
T Consensus 38 ~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~---------D~~~~~~~l~~~l~k~~~~~~~~~p---~vvi~vP~~~T 105 (326)
T PF06723_consen 38 KILAVGDEAKAMLGKTPDNIEVVRPLKDGVIA---------DYEAAEEMLRYFLKKALGRRSFFRP---RVVICVPSGIT 105 (326)
T ss_dssp -EEEESHHHHTTTTS-GTTEEEE-SEETTEES---------SHHHHHHHHHHHHHHHHTSS-SS-----EEEEEE-SS--
T ss_pred eEEEEhHHHHHHhhcCCCccEEEccccCCccc---------CHHHHHHHHHHHHHHhccCCCCCCC---eEEEEeCCCCC
Confidence 446799999887644 689999999999998 9999999999999776653222222 2333 344445
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc-----eEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHH
Q 007609 251 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 325 (596)
Q Consensus 251 ~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~s-----tg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~ 325 (596)
..+.|.+.+.+ ...|+.+|+++.+++||++|+|.. ..+|||||+++|.|+-+-.|-++. ...+++||+++++
T Consensus 106 ~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~~De 182 (326)
T PF06723_consen 106 EVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDDIDE 182 (326)
T ss_dssp HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcchhH
Confidence 44433455554 679999999999999999999963 579999999999999998887764 4678999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccce--eeecccCCCCCCCceeeeeeecCCCCCCCC
Q 007609 326 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVA--VVHSYEDGMPPGSHKTRLIALNVPPMGLFY 403 (596)
Q Consensus 326 ~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~--~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~ 403 (596)
.+.+.++.+. ++ .+....+|+||++++++...+..... ...+...++|.. ..+...
T Consensus 183 aI~~~ir~~y--------~l--~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~---~~i~~~--------- 240 (326)
T PF06723_consen 183 AIIRYIREKY--------NL--LIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKS---IEITSS--------- 240 (326)
T ss_dssp HHHHHHHHHH--------SE--E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEE---EEEEHH---------
T ss_pred HHHHHHHHhh--------Cc--ccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEE---EEEcHH---------
Confidence 9999887652 22 36778999999999987643211111 112223333310 111100
Q ss_pred CcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHH
Q 007609 404 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 483 (596)
Q Consensus 404 p~i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~~r~~~~E~lfp~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~ 483 (596)
.+.+.+- .....+.++|.+.+.
T Consensus 241 ------------------------------------ev~~ai~----------------------~~~~~I~~~i~~~Le 262 (326)
T PF06723_consen 241 ------------------------------------EVREAIE----------------------PPVDQIVEAIKEVLE 262 (326)
T ss_dssp ------------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHH
Confidence 0000000 012368889999999
Q ss_pred hcCChhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeee
Q 007609 484 STGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 551 (596)
Q Consensus 484 ~~~~~d~r~~L~~n-IvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIl 551 (596)
++ |+++..+++.| |+|+||+|+++||.++|++++. + .|.+. .+|..++=+|+..+
T Consensus 263 ~~-pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~--------~-pV~va---~~P~~~va~G~~~~ 318 (326)
T PF06723_consen 263 KT-PPELAADILENGIVLTGGGALLRGLDEYISEETG--------V-PVRVA---DDPLTAVARGAGKL 318 (326)
T ss_dssp TS--HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS--------S--EEE----SSTTTHHHHHHHHT
T ss_pred hC-CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC--------C-CEEEc---CCHHHHHHHHHHHH
Confidence 99 99999998876 9999999999999999999995 1 46665 36777887886444
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.62 E-value=5.4e-15 Score=149.44 Aligned_cols=271 Identities=19% Similarity=0.218 Sum_probs=181.6
Q ss_pred cceEEccccccCCCC--CCcEEEcceecCeeeecCCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCCh
Q 007609 174 REFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDN 251 (596)
Q Consensus 174 ~~~~vGeeAl~~~~~--~~~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~ 251 (596)
.-+.||+||..+-.+ .+....+|++.|.+- +++..+.++.|.+++..+-... + .+|.+++--|..-
T Consensus 45 ~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIA---------d~~~te~ml~~fik~~~~~~~~-~--~~prI~i~vP~g~ 112 (342)
T COG1077 45 VVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFEVTELMLKYFIKKVHKNGSS-F--PKPRIVICVPSGI 112 (342)
T ss_pred eEEEehHHHHHHhccCCCCceEEeecCCcEee---------cHHHHHHHHHHHHHHhccCCCC-C--CCCcEEEEecCCc
Confidence 347799999887533 579999999999997 9999999999998643321211 1 1133333334333
Q ss_pred HHHH-HHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHH
Q 007609 252 REIK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 325 (596)
Q Consensus 252 ~~vr-~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~ 325 (596)
..++ +.+.-..++-|...|+++.|+++|++|+|+ +-.+|||||.++|.|+-+..|=+.. ...+.+||+.+++
T Consensus 113 T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~--~~Sirv~GD~~De 190 (342)
T COG1077 113 TDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS--SSSVRVGGDKMDE 190 (342)
T ss_pred cHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE--EeeEEEecchhhH
Confidence 3333 344444578899999999999999999997 3479999999999999987654442 3457899999999
Q ss_pred HHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccc----cceeeecccCCCCCCCceeeeeeecCCCCCC
Q 007609 326 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEID----AVAVVHSYEDGMPPGSHKTRLIALNVPPMGL 401 (596)
Q Consensus 326 ~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~----~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~l 401 (596)
.+...++++. ++ .+-...+|+||.+..++...+.+ .....+....++|.. ..+.
T Consensus 191 ~Ii~yvr~~~--------nl--~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~---i~i~--------- 248 (342)
T COG1077 191 AIIVYVRKKY--------NL--LIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKT---ITIN--------- 248 (342)
T ss_pred HHHHHHHHHh--------Ce--eecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCee---EEEc---------
Confidence 9999987652 22 34456799999998876642111 000111111222210 0000
Q ss_pred CCCcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHH
Q 007609 402 FYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSS 481 (596)
Q Consensus 402 f~p~i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~~r~~~~E~lfp~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~s 481 (596)
. ..+.|.+- .....|.++|...
T Consensus 249 -------s-----------------------------~ev~eal~----------------------~~v~~Iveair~~ 270 (342)
T COG1077 249 -------S-----------------------------EEIAEALE----------------------EPLNGIVEAIRLV 270 (342)
T ss_pred -------H-----------------------------HHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 0 00001110 1134688999999
Q ss_pred HHhcCChhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeee
Q 007609 482 ILSTGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 551 (596)
Q Consensus 482 I~~~~~~d~r~~L~~n-IvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIl 551 (596)
+.+| |+++-.+.+.+ |+|+||+|++.||.++|.++..- .|.+.+ +|-..+=+|+...
T Consensus 271 Le~t-pPeL~~DI~ergivltGGGalLrglD~~i~~et~~---------pv~ia~---~pL~~Va~G~G~~ 328 (342)
T COG1077 271 LEKT-PPELAADIVERGIVLTGGGALLRGLDRLLSEETGV---------PVIIAD---DPLTCVAKGTGKA 328 (342)
T ss_pred HhhC-CchhcccHhhCceEEecchHHhcCchHhHHhccCC---------eEEECC---ChHHHHHhccchh
Confidence 9999 78999999999 99999999999999999988652 345543 5556666675443
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.44 E-value=5.1e-12 Score=127.25 Aligned_cols=135 Identities=18% Similarity=0.171 Sum_probs=104.9
Q ss_pred EcceecCeeeecCCCCccccHHHHHHHHHHHhh---hhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeE
Q 007609 194 HRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASA 270 (596)
Q Consensus 194 ~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~---~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf~~v 270 (596)
..||++|.+. |++..+.++++++. ..++.+.. .+|+-+|..|+..+. +.+.-+++..|+.-+
T Consensus 28 ~~~~~~g~I~---------d~~~~~~~l~~l~~~a~~~~g~~~~-----~vvisVP~~~~~~~r-~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 28 ADVVRDGIVV---------DFLGAVEIVRRLKDTLEQKLGIELT-----HAATAIPPGTIEGDP-KVIVNVIESAGIEVL 92 (239)
T ss_pred cccccCCeEE---------EhHHHHHHHHHHHHHHHHHhCCCcC-----cEEEEECCCCCcccH-HHHHHHHHHcCCceE
Confidence 4689999998 99999999999984 23443221 257777777765543 334455678899999
Q ss_pred EEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 007609 271 VVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMD 350 (596)
Q Consensus 271 ~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~d 350 (596)
.++.+++|++.+.|....+|||+|++.|.++-+.+|.++. ...+++||+++|+.+.+.+. .+
T Consensus 93 ~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~----------------i~ 154 (239)
T TIGR02529 93 HVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG----------------IS 154 (239)
T ss_pred EEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC----------------CC
Confidence 9999999999998888889999999999999999998774 34678999999998764431 35
Q ss_pred HHHHHHHHHhc
Q 007609 351 LLMLNRIKESY 361 (596)
Q Consensus 351 ~~l~e~lKe~~ 361 (596)
+..+|++|...
T Consensus 155 ~~~AE~~K~~~ 165 (239)
T TIGR02529 155 FEEAEEYKRGH 165 (239)
T ss_pred HHHHHHHHHhc
Confidence 57789998654
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.22 E-value=2.4e-10 Score=117.00 Aligned_cols=138 Identities=19% Similarity=0.204 Sum_probs=102.7
Q ss_pred cEEEcceecCeeeecCCCCccccHHHHHHHHHHHhh---hhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCC
Q 007609 191 YCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRF 267 (596)
Q Consensus 191 ~~l~~Pi~~G~in~~~~~s~~~~~~dle~Iw~~~l~---~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf 267 (596)
.....++++|.+. |++.....+++++. +.++++... +++-+|+.++....+.+. -+.+..|+
T Consensus 52 ~~~~~~vr~G~i~---------di~~a~~~i~~~~~~ae~~~g~~i~~-----v~~~vp~~~~~~~~~~~~-~~~~~aGl 116 (267)
T PRK15080 52 LEWADVVRDGIVV---------DFIGAVTIVRRLKATLEEKLGRELTH-----AATAIPPGTSEGDPRAII-NVVESAGL 116 (267)
T ss_pred eccccccCCCEEe---------eHHHHHHHHHHHHHHHHHHhCCCcCe-----EEEEeCCCCCchhHHHHH-HHHHHcCC
Confidence 4456789999987 78888888887774 234554221 344566666544333344 66788999
Q ss_pred CeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccc
Q 007609 268 ASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK 347 (596)
Q Consensus 268 ~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~ 347 (596)
.-..++.++.+++.+.+...++|||||+++|.++-+.+|.++.. ..+++||+++|+.+.+.+.
T Consensus 117 ~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~--------------- 179 (267)
T PRK15080 117 EVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG--------------- 179 (267)
T ss_pred ceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---------------
Confidence 99999999999999888778999999999999998899987753 4679999999998875442
Q ss_pred cccHHHHHHHHHhc
Q 007609 348 AMDLLMLNRIKESY 361 (596)
Q Consensus 348 ~~d~~l~e~lKe~~ 361 (596)
.++..+|++|...
T Consensus 180 -i~~~eAE~lK~~~ 192 (267)
T PRK15080 180 -ISFEEAEQYKRDP 192 (267)
T ss_pred -CCHHHHHHHHhcc
Confidence 2456688888653
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.82 E-value=2.2e-08 Score=109.20 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHH
Q 007609 251 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 325 (596)
Q Consensus 251 ~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~ 325 (596)
+..++.+.+ +++..|+.-..++.+++|++++++. ...||||||+++|+++-+.+|.+. ....+++||+++|+
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHHH
Confidence 344455655 6789999999999999999998864 248999999999999999999876 34679999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccccHHHHHHHHHhcee
Q 007609 326 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 363 (596)
Q Consensus 326 ~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~ 363 (596)
.+...|. .++..+|++|.++..
T Consensus 242 dIa~~l~----------------i~~~~AE~lK~~~g~ 263 (420)
T PRK09472 242 DIAYAFG----------------TPPSDAEAIKVRHGC 263 (420)
T ss_pred HHHHHhC----------------cCHHHHHHHHHhcce
Confidence 8875442 245779999987754
No 27
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.79 E-value=3.3e-08 Score=106.12 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHH
Q 007609 254 IKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 328 (596)
Q Consensus 254 vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~ 328 (596)
++.+.+ +++..|+.-+.+..+++|++++++. ...+|||+|+++|+++.+.+|.... ...+++||+++|+.+.
T Consensus 160 v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~ 236 (371)
T TIGR01174 160 LRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIA 236 (371)
T ss_pred HHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHH
Confidence 333444 5688999999999999999998753 2479999999999999999998664 4568999999999887
Q ss_pred HHHHhcCCCCCcccccccccccHHHHHHHHHhceecc
Q 007609 329 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 365 (596)
Q Consensus 329 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~ 365 (596)
+.+. .+++.+|++|.+++...
T Consensus 237 ~~l~----------------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 237 KALR----------------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred HHhC----------------CCHHHHHHHHHHeeEec
Confidence 5441 23577999999998764
No 28
>CHL00094 dnaK heat shock protein 70
Probab=98.77 E-value=1.6e-07 Score=107.42 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=69.4
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCC--ee-cccC
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDG--VA-LPNT 312 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~dG--~~-l~~s 312 (596)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. ...+|+|+|++++.|+-+.-| .. +-.+
T Consensus 138 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~ 216 (621)
T CHL00094 138 AVITVPAYFNDSQ-RQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLST 216 (621)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEE
Confidence 6888888887554 4445555678899999999999999998875 357999999999999887543 21 1122
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007609 313 EKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 313 ~~~l~~GG~dit~~l~~lL~ 332 (596)
.....+||+|+++.|.+.+.
T Consensus 217 ~gd~~lGG~d~D~~l~~~~~ 236 (621)
T CHL00094 217 SGDTHLGGDDFDKKIVNWLI 236 (621)
T ss_pred ecCCCcChHHHHHHHHHHHH
Confidence 33568999999999886554
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.73 E-value=1.2e-07 Score=108.79 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=69.1
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeC--Cee-cccC
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVED--GVA-LPNT 312 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~d--G~~-l~~s 312 (596)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+.+|+|+|+++|.|+.+.- |.. +..+
T Consensus 136 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~ 214 (627)
T PRK00290 136 AVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLST 214 (627)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEe
Confidence 6888888888665 4445556678899999999999999988874 45899999999999887743 322 2222
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007609 313 EKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 313 ~~~l~~GG~dit~~l~~lL~ 332 (596)
.....+||.++++.|.+.+.
T Consensus 215 ~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 215 NGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred cCCCCcChHHHHHHHHHHHH
Confidence 33468999999999987654
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.72 E-value=4.2e-07 Score=104.54 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=71.9
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc-----eEEEEEeCCCceEEEEee--CCeec-ccC
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVAL-PNT 312 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~s-----tg~VVDiGa~~TsV~pV~--dG~~l-~~s 312 (596)
+|+-+|..|+..+ |+.+.-..+..|++-+.++.++.||++++|.. ..+|+|+|++++.|+-+. +|..- ..+
T Consensus 177 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~ 255 (663)
T PTZ00400 177 AVITVPAYFNDSQ-RQATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKAT 255 (663)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEec
Confidence 6888888888665 45555667788999999999999999998863 689999999999998774 56432 223
Q ss_pred cEEecchHHHHHHHHHHHHHh
Q 007609 313 EKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 313 ~~~l~~GG~dit~~l~~lL~~ 333 (596)
.....+||+|+++.|.+.+..
T Consensus 256 ~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 256 NGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred ccCCCcCHHHHHHHHHHHHHH
Confidence 345689999999999876543
No 31
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.72 E-value=3.4e-07 Score=105.38 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=69.5
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCee-cccC
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 312 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~--dG~~-l~~s 312 (596)
+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.||++++|. ..-+|+|+|++++.|+.+. +|.. +-.+
T Consensus 175 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 175 AVITVPAYFNDSQ-RTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 6888888888665 4555556788899999999999999998875 3579999999999987774 3332 1122
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007609 313 EKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 313 ~~~l~~GG~dit~~l~~lL~ 332 (596)
.-...+||+|+++.|.+.+.
T Consensus 254 ~gd~~LGG~dfD~~L~~~~~ 273 (673)
T PLN03184 254 SGDTHLGGDDFDKRIVDWLA 273 (673)
T ss_pred cCCCccCHHHHHHHHHHHHH
Confidence 23468999999999987654
No 32
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.70 E-value=8.8e-08 Score=109.01 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=78.7
Q ss_pred HHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEE
Q 007609 217 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVV 291 (596)
Q Consensus 217 le~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VV 291 (596)
|..|++.+- +.++.+.. .+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+-+|+
T Consensus 114 L~~lk~~a~-~~lg~~v~-----~~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~ 186 (599)
T TIGR01991 114 LKKLKQRAE-ESLGGDLV-----GAVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVY 186 (599)
T ss_pred HHHHHHHHH-HHhCCCcc-----eEEEEECCCCCHHH-HHHHHHHHHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEE
Confidence 344444443 45654432 26888888888765 4555556788999999999999999988764 357999
Q ss_pred EeCCCceEEEEee--CCee-cccCcEEecchHHHHHHHHHHHHHhc
Q 007609 292 NMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQRHH 334 (596)
Q Consensus 292 DiGa~~TsV~pV~--dG~~-l~~s~~~l~~GG~dit~~l~~lL~~~ 334 (596)
|+|++++.|+.+. +|.. +-.+.....+||+|+++.|.+.+..+
T Consensus 187 DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 187 DLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred EcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999998874 4432 11222345899999999998876543
No 33
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.68 E-value=2.1e-07 Score=106.59 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=71.2
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCee-cccC
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 312 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~--dG~~-l~~s 312 (596)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. ..-+|+|+|++++.|+-+. +|.. +..+
T Consensus 163 aVITVPayF~~~q-R~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at 241 (657)
T PTZ00186 163 AVVTCPAYFNDAQ-RQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKAT 241 (657)
T ss_pred EEEEECCCCChHH-HHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEe
Confidence 6887888787664 4556666788899999999999999988875 3579999999999998885 6643 2223
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007609 313 EKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 313 ~~~l~~GG~dit~~l~~lL~ 332 (596)
.-...+||+|+++.|.+.+.
T Consensus 242 ~Gd~~LGG~DfD~~l~~~~~ 261 (657)
T PTZ00186 242 NGDTHLGGEDFDLALSDYIL 261 (657)
T ss_pred cCCCCCCchhHHHHHHHHHH
Confidence 34568999999998887554
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.66 E-value=2.3e-07 Score=105.72 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=68.3
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC------ceEEEEEeCCCceEEEEee--CCee-ccc
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVA-LPN 311 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~------stg~VVDiGa~~TsV~pV~--dG~~-l~~ 311 (596)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. ...+|+|+|++++.|+.+. +|.. +..
T Consensus 133 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 133 AVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 6888888888765 4444446677899999999999999988764 3579999999999887764 3432 122
Q ss_pred CcEEecchHHHHHHHHHHHHH
Q 007609 312 TEKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 312 s~~~l~~GG~dit~~l~~lL~ 332 (596)
+.....+||.|+++.|.+.+.
T Consensus 212 ~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 212 TAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred ecCCcccCchhHHHHHHHHHH
Confidence 233467999999999986654
No 35
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.63 E-value=4e-07 Score=104.59 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=76.4
Q ss_pred HHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc------eEEE
Q 007609 217 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACV 290 (596)
Q Consensus 217 le~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~s------tg~V 290 (596)
|..+++.+- ..|+-+.. .+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.||++++|.. .-+|
T Consensus 118 L~~lk~~ae-~~lg~~v~-----~~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV 190 (653)
T PRK13411 118 LQKLKQDAE-AYLGEPVT-----QAVITVPAYFTDAQ-RQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILV 190 (653)
T ss_pred HHHHHHHHH-HHhCCCcc-----eEEEEECCCCCcHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEE
Confidence 344555442 45654322 26888888887665 44445567788999999999999999988752 4799
Q ss_pred EEeCCCceEEEEee--CCee-cccCcEEecchHHHHHHHHHHHHH
Q 007609 291 VNMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 291 VDiGa~~TsV~pV~--dG~~-l~~s~~~l~~GG~dit~~l~~lL~ 332 (596)
+|+|++++.|+-+. +|.. +..+.....+||+|+++.|.+.+.
T Consensus 191 ~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~ 235 (653)
T PRK13411 191 FDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLV 235 (653)
T ss_pred EEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHH
Confidence 99999999988763 3432 222233457999999999886554
No 36
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.54 E-value=1.3e-06 Score=100.62 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=70.0
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-------ceEEEEEeCCCceEEEEee--CCeec-c
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVAL-P 310 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-------stg~VVDiGa~~TsV~pV~--dG~~l-~ 310 (596)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+.+|+|+|++++.|+-|. +|..- .
T Consensus 143 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 221 (653)
T PTZ00009 143 AVVTVPAYFNDSQ-RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVK 221 (653)
T ss_pred eEEEeCCCCCHHH-HHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 6888888887655 5566667788999999999999999988764 3689999999999987764 55422 2
Q ss_pred cCcEEecchHHHHHHHHHHHHH
Q 007609 311 NTEKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 311 ~s~~~l~~GG~dit~~l~~lL~ 332 (596)
.+.-...+||+|++..|.+.+.
T Consensus 222 a~~gd~~lGG~d~D~~l~~~~~ 243 (653)
T PTZ00009 222 ATAGDTHLGGEDFDNRLVEFCV 243 (653)
T ss_pred EecCCCCCChHHHHHHHHHHHH
Confidence 2233468999999999886553
No 37
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.54 E-value=6.5e-07 Score=102.21 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=70.7
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCee-cccC
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 312 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~--dG~~-l~~s 312 (596)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. ..-+|+|+|++++.|+.+. .|.. +-.+
T Consensus 152 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat 230 (616)
T PRK05183 152 AVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLAT 230 (616)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEe
Confidence 6888888888665 4555666788999999999999999987764 3479999999999988775 4432 1122
Q ss_pred cEEecchHHHHHHHHHHHHHhc
Q 007609 313 EKTLPFGGEDISRCLLWTQRHH 334 (596)
Q Consensus 313 ~~~l~~GG~dit~~l~~lL~~~ 334 (596)
.....+||+|+++.|.+.+..+
T Consensus 231 ~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 231 GGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred cCCCCcCHHHHHHHHHHHHHHH
Confidence 3346799999999998766543
No 38
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.52 E-value=3.4e-07 Score=103.85 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=70.9
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCee-cccC
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 312 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~--dG~~-l~~s 312 (596)
+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.|+.||++++|. ..-+|+|+|++++.|+-+. +|.. +-.+
T Consensus 144 aVITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at 222 (595)
T PRK01433 144 AVITVPAHFNDAA-RGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIAT 222 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEE
Confidence 6888888888655 4556666788999999999999999998875 3469999999999988774 5532 1122
Q ss_pred cEEecchHHHHHHHHHHHHHhc
Q 007609 313 EKTLPFGGEDISRCLLWTQRHH 334 (596)
Q Consensus 313 ~~~l~~GG~dit~~l~~lL~~~ 334 (596)
.-...+||+|+++.|.+.+...
T Consensus 223 ~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 223 NGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred cCCcccChHHHHHHHHHHHHHh
Confidence 2345799999999998876543
No 39
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.49 E-value=1.5e-06 Score=99.87 Aligned_cols=109 Identities=22% Similarity=0.277 Sum_probs=77.3
Q ss_pred HHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEE
Q 007609 217 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVV 291 (596)
Q Consensus 217 le~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VV 291 (596)
|..+++.+- ..++-+.. .+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.||++++|. ...+|+
T Consensus 120 L~~lk~~ae-~~lg~~v~-----~~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~ 192 (668)
T PRK13410 120 LRKLADDAS-RYLGEPVT-----GAVITVPAYFNDSQ-RQATRDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVF 192 (668)
T ss_pred HHHHHHHHH-HHhCCCcc-----eEEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEE
Confidence 355555553 45553322 26888888888765 3445555678899999999999999998875 358999
Q ss_pred EeCCCceEEEEee--CCee-cccCcEEecchHHHHHHHHHHHHH
Q 007609 292 NMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQR 332 (596)
Q Consensus 292 DiGa~~TsV~pV~--dG~~-l~~s~~~l~~GG~dit~~l~~lL~ 332 (596)
|+|++++.|+.+. +|.. +..+.....+||.|+++.|.+.+.
T Consensus 193 DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~ 236 (668)
T PRK13410 193 DLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA 236 (668)
T ss_pred ECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHH
Confidence 9999999988775 4432 222233457999999999886553
No 40
>PRK11678 putative chaperone; Provisional
Probab=98.39 E-value=9.9e-06 Score=88.97 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=64.4
Q ss_pred eeeecCCCCC-----hHHH--HHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee-CC-
Q 007609 241 AILVLPESFD-----NREI--KEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE-DG- 306 (596)
Q Consensus 241 ~VLvip~~~~-----~~~v--r~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~-dG- 306 (596)
+|+-+|..|+ ..+. ++.+.-..+..||+.+.++.|+.||++++|. ...+|+|+|++++.++-|. ++
T Consensus 152 ~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 152 AVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred EEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCc
Confidence 6777787776 3222 2345666788999999999999999999874 4689999999999888774 21
Q ss_pred ---------eecccCcEEecchHHHHHHHHH
Q 007609 307 ---------VALPNTEKTLPFGGEDISRCLL 328 (596)
Q Consensus 307 ---------~~l~~s~~~l~~GG~dit~~l~ 328 (596)
-++..+- ..+||+|+++.|.
T Consensus 232 ~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 232 WRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred ccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 1232222 3699999999985
No 41
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.28 E-value=4.1e-06 Score=90.24 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHH
Q 007609 256 EMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT 330 (596)
Q Consensus 256 ~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~l 330 (596)
+-+.-+++..|..=..++-+++||+.++=. -.+|+||||+++|+|+.+.+|-+... ..+++||+++|.-+.+.
T Consensus 168 ~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~ 245 (418)
T COG0849 168 ENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKG 245 (418)
T ss_pred HHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHH
Confidence 444556788888888888889999887632 46899999999999999999998854 56899999999999876
Q ss_pred HHhcCCCCCcccccccccccHHHHHHHHHhceec
Q 007609 331 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI 364 (596)
Q Consensus 331 L~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v 364 (596)
|. .+++-+|+||.++...
T Consensus 246 l~----------------t~~~~AE~iK~~~g~a 263 (418)
T COG0849 246 LK----------------TPFEEAERIKIKYGSA 263 (418)
T ss_pred hC----------------CCHHHHHHHHHHcCcc
Confidence 63 3457799999988543
No 42
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.27 E-value=4e-06 Score=95.68 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=68.3
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC------ceEEEEEeCCCceEEEEee--CCeec-cc
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVAL-PN 311 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~------stg~VVDiGa~~TsV~pV~--dG~~l-~~ 311 (596)
+|+-+|..|+..+ |+.+.-+.+..|+..+.++.++.||++++|. .+-+|+|+|++++.|+.|. +|..- ..
T Consensus 138 ~vitVPa~~~~~q-r~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 138 VVITVPAYFTDEQ-RQALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp EEEEE-TT--HHH-HHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred ceeeechhhhhhh-hhcccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccc
Confidence 6788888888765 4566666788999999999999999987764 4689999999999888874 56432 22
Q ss_pred CcEEecchHHHHHHHHHHHHHh
Q 007609 312 TEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 312 s~~~l~~GG~dit~~l~~lL~~ 333 (596)
+.....+||.++++.|.+.+..
T Consensus 217 ~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 217 TAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccceecceeeccccc
Confidence 3345689999999999876643
No 43
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2e-05 Score=89.27 Aligned_cols=150 Identities=23% Similarity=0.318 Sum_probs=100.5
Q ss_pred ceEEccccccCC----CCCCcEEEcceecC------eeeec-CCCCccc-cHHHHHHHHHHHhhhhcCCCCCCCccccee
Q 007609 175 EFICGEEALRVS----PTEPYCIHRPIRRG------HLNIS-QHYPMQQ-VLEDLYAIWDWILTEKLHIPRSERNLYSAI 242 (596)
Q Consensus 175 ~~~vGeeAl~~~----~~~~~~l~~Pi~~G------~in~~-~~~s~~~-~~~dle~Iw~~~l~~~L~i~~~d~~~y~~V 242 (596)
+.++|..|.+.. .+--+.+..-|-+| .+.+. ..++.+. .-.-|.++++++ ...|+-...+ +|
T Consensus 51 ~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~a-e~~lg~~v~~-----~V 124 (579)
T COG0443 51 EVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDA-EAYLGEKVTD-----AV 124 (579)
T ss_pred CEEecHHHHHHhhhCCcceEEEEehhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHH-HHhhCCCcce-----EE
Confidence 689999886642 22235555544433 12221 1233332 222345566665 2455533322 57
Q ss_pred eecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCe-ecccCcE
Q 007609 243 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGV-ALPNTEK 314 (596)
Q Consensus 243 Lvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~-----stg~VVDiGa~~TsV~pV~--dG~-~l~~s~~ 314 (596)
+-+|..|+..+ |+.+.-..+..|+.-+.++.|+.||+|++|. ..-+|+|+|++++.|+-|. +|. -+..+..
T Consensus 125 ItVPayF~d~q-R~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~g 203 (579)
T COG0443 125 ITVPAYFNDAQ-RQATKDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGG 203 (579)
T ss_pred EEeCCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCC
Confidence 77787887766 6677788889999999999999999999986 4689999999999998885 353 2233455
Q ss_pred EecchHHHHHHHHHHHH
Q 007609 315 TLPFGGEDISRCLLWTQ 331 (596)
Q Consensus 315 ~l~~GG~dit~~l~~lL 331 (596)
...+||+|++..|...+
T Consensus 204 d~~LGGddfD~~l~~~~ 220 (579)
T COG0443 204 DNHLGGDDFDNALIDYL 220 (579)
T ss_pred CcccCchhHHHHHHHHH
Confidence 67899999999987644
No 44
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.04 E-value=0.00011 Score=78.18 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhc------------CCceEEEEEeCCCceEEEEeeCCeecccCcEEecc
Q 007609 251 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGN------------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPF 318 (596)
Q Consensus 251 ~~~vr~l~eilfe~~gf~~v~~~~esvlA~fga------------G~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~ 318 (596)
+..++.+.++ |+..|+.=..+..+++|..-+. ...+.++||||+..|+++-+.+|.++. ...+++
T Consensus 142 ~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~ 218 (348)
T TIGR01175 142 KEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVPF 218 (348)
T ss_pred HHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEeec
Confidence 3444456555 7888888777777777654322 112489999999999999999998874 568999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHh
Q 007609 319 GGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 360 (596)
Q Consensus 319 GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 360 (596)
||+++|+.+.+.+. .+++-++++|.+
T Consensus 219 G~~~i~~~i~~~~~----------------~~~~~Ae~~k~~ 244 (348)
T TIGR01175 219 GTRQLTSELSRAYG----------------LNPEEAGEAKQQ 244 (348)
T ss_pred hHHHHHHHHHHHcC----------------CCHHHHHHHHhc
Confidence 99999998875331 355778888864
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.48 E-value=0.00055 Score=72.70 Aligned_cols=126 Identities=19% Similarity=0.355 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCcccc-------------eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhH--
Q 007609 214 LEDLYAIWDWILTEKLHIPRSERNLYS-------------AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLA-- 278 (596)
Q Consensus 214 ~~dle~Iw~~~l~~~L~i~~~d~~~y~-------------~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvl-- 278 (596)
-++++..+.+-..+++.++.++...-. .||++- ..+..+...++ +|+..|+.-..+--++.|
T Consensus 87 ~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A--a~k~~v~~~~~-~~~~aGL~~~~vDv~~~Al~ 163 (340)
T PF11104_consen 87 EKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA--APKEIVESYVE-LFEEAGLKPVAVDVEAFALA 163 (340)
T ss_dssp HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE--EEHHHHHHHHH-HHHHTT-EEEEEEEHHHHGG
T ss_pred HHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE--EcHHHHHHHHH-HHHHcCCceEEEeehHHHHH
Confidence 456666666666666665544431100 122110 11223333444 478888876666554444
Q ss_pred HhhhcC---------CceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 007609 279 AVFGNG---------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAM 349 (596)
Q Consensus 279 A~fgaG---------~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~ 349 (596)
-+|... ..+-++||||+..|+++-+.+|.++- .+.+++||+++|+.+.+.+. .
T Consensus 164 r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~~----------------i 225 (340)
T PF11104_consen 164 RLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLTEAIARELG----------------I 225 (340)
T ss_dssp GGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhcC----------------C
Confidence 334331 13469999999999999999999884 46789999999999875431 3
Q ss_pred cHHHHHHHHHh
Q 007609 350 DLLMLNRIKES 360 (596)
Q Consensus 350 d~~l~e~lKe~ 360 (596)
+++-++++|..
T Consensus 226 ~~~~Ae~~k~~ 236 (340)
T PF11104_consen 226 DFEEAEELKRS 236 (340)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 55667887764
No 46
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.25 E-value=0.0021 Score=68.43 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=58.4
Q ss_pred cCCCeEEEeehhhHHhhhcCC-------------ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHH
Q 007609 265 LRFASAVVHQEGLAAVFGNGL-------------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 331 (596)
Q Consensus 265 ~gf~~v~~~~esvlA~fgaG~-------------stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL 331 (596)
..|..|.+++|+++|.|.... ...+|||||+.+|.++-+.+|.+.......++.|..++-+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 456789999999999876543 2459999999999999999888888777789999999999999888
Q ss_pred Hh
Q 007609 332 RH 333 (596)
Q Consensus 332 ~~ 333 (596)
+.
T Consensus 231 ~~ 232 (344)
T PRK13917 231 SK 232 (344)
T ss_pred Hh
Confidence 53
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.77 E-value=0.007 Score=63.79 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=58.1
Q ss_pred cCCCeEEEeehhhHHhhhc---------CCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHhc
Q 007609 265 LRFASAVVHQEGLAAVFGN---------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 334 (596)
Q Consensus 265 ~gf~~v~~~~esvlA~fga---------G~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~~ 334 (596)
+.+..|.+.+|++.|.|.. .....+|||||+.+|.++-+.++.+.......++.|-.++.+.+.+.+...
T Consensus 137 i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 137 VTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred EEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 5778899999999998754 234579999999999998777777777777788999999999999888644
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.30 E-value=0.22 Score=51.71 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCC-----------ChHHHHHHHHHHHHhcCCCeEEEeehhhHHh-
Q 007609 213 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESF-----------DNREIKEMLSIVLRDLRFASAVVHQEGLAAV- 280 (596)
Q Consensus 213 ~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~-----------~~~~vr~l~eilfe~~gf~~v~~~~esvlA~- 280 (596)
+-++|+...++....++..+.++-... -.++.+..- .++++-+...-.|+.-|+.-..+=-++.+..
T Consensus 99 de~eL~~~V~~ea~~y~PyP~EEv~lD-y~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~r 177 (354)
T COG4972 99 DEKELEDQVESEASRYIPYPLEEVNLD-YQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVLDVESFALLR 177 (354)
T ss_pred cHHHHHHHHHHHHhhcCCCchhhcccc-eEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEEehHHHHHHH
Confidence 445666666666655544443332110 122232221 2344334444567888887776666665532
Q ss_pred -hh-------cCC--ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHH
Q 007609 281 -FG-------NGL--STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 331 (596)
Q Consensus 281 -fg-------aG~--stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL 331 (596)
|. ..- ....|+|||+..|+++-+.+|.++. .+..++||+++|+.+.+.+
T Consensus 178 a~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~ 236 (354)
T COG4972 178 AYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY--TREVPVGTDQLTQEIQRAY 236 (354)
T ss_pred HHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee--EeeccCcHHHHHHHHHHHh
Confidence 22 221 1245999999999999999999985 4689999999999887654
No 49
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=95.72 E-value=0.015 Score=63.20 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHH---HHHhcCCCeEEEeehhhHHhhhcCC----
Q 007609 213 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSI---VLRDLRFASAVVHQEGLAAVFGNGL---- 285 (596)
Q Consensus 213 ~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ei---lfe~~gf~~v~~~~esvlA~fgaG~---- 285 (596)
|-+.++.|.+.-| ++-++.+++-.. ..++|+-..-..+..++.++- ...+|=+...-+--+++++.+|+|.
T Consensus 64 D~~~i~~~V~~ey-~~Agi~~~die~-~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLs 141 (475)
T PRK10719 64 DEAAIKELIEEEY-QKAGIAPESIDS-GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 141 (475)
T ss_pred cHHHHHHHHHHHH-HHcCCCHHHccc-cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhh
Confidence 6788999999888 567888876422 145666444433333444332 1122222233344566666777764
Q ss_pred ----ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHH
Q 007609 286 ----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 325 (596)
Q Consensus 286 ----stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~ 325 (596)
...|+||||+++|+++-..+|.++. ...+++||++||.
T Consensus 142 eEke~gVa~IDIGgGTT~iaVf~~G~l~~--T~~l~vGG~~IT~ 183 (475)
T PRK10719 142 EERNTRVLNIDIGGGTANYALFDAGKVID--TACLNVGGRLIET 183 (475)
T ss_pred hhccCceEEEEeCCCceEEEEEECCEEEE--EEEEecccceEEE
Confidence 4689999999999999999999884 4579999998886
No 50
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.48 E-value=0.005 Score=59.18 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=66.5
Q ss_pred HHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHhcCCCCCcc
Q 007609 262 LRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIR 341 (596)
Q Consensus 262 fe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~ 341 (596)
+|.-|...++++.|+.+|++-.++..|.|||+|.++|-|+-|.+|-++..+ --+-||.++|-.|. ++
T Consensus 116 iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvlA------G~----- 182 (277)
T COG4820 116 IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVLA------GN----- 182 (277)
T ss_pred ecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEEe------cc-----
Confidence 588899999999999999999999999999999999999999999998643 35789988874432 21
Q ss_pred cccccccccHHHHHHHHH
Q 007609 342 TDILTKAMDLLMLNRIKE 359 (596)
Q Consensus 342 ~~~l~~~~d~~l~e~lKe 359 (596)
..++++-+|+.|.
T Consensus 183 -----ygi~~EeAE~~Kr 195 (277)
T COG4820 183 -----YGISLEEAEQYKR 195 (277)
T ss_pred -----cCcCHhHHHHhhh
Confidence 2467788888884
No 51
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.12 Score=54.61 Aligned_cols=111 Identities=17% Similarity=0.265 Sum_probs=69.2
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC------ceEEEEEeCCCceEEE--EeeCCeec-cc
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVI--CVEDGVAL-PN 311 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~------stg~VVDiGa~~TsV~--pV~dG~~l-~~ 311 (596)
+|+-+|..|+..+ |+.+.-.=---|..-+-+++++.+|+.++|+ .+-+|.|.|.++-.|+ -+.+|.-- -.
T Consensus 175 AVvTvPAYFNDAQ-rQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVla 253 (663)
T KOG0100|consen 175 AVVTVPAYFNDAQ-RQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLA 253 (663)
T ss_pred eEEecchhcchHH-HhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEe
Confidence 6777777777654 3333322223466678899999999988886 4789999999987665 45677521 12
Q ss_pred CcEEecchHHHHHHHH----HHHHHhcCCCCCcccccccccccHHHHHHHHHh
Q 007609 312 TEKTLPFGGEDISRCL----LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 360 (596)
Q Consensus 312 s~~~l~~GG~dit~~l----~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 360 (596)
+.--...||.|.++.. .++..++.. .++ +-|-..+..|+..
T Consensus 254 TnGDThLGGEDFD~rvm~~fiklykkK~g------kDv--~kdnkA~~KLrRe 298 (663)
T KOG0100|consen 254 TNGDTHLGGEDFDQRVMEYFIKLYKKKHG------KDV--RKDNKAVQKLRRE 298 (663)
T ss_pred cCCCcccCccchHHHHHHHHHHHHhhhcC------Ccc--chhhHHHHHHHHH
Confidence 2334578999887654 444443321 122 3455666666654
No 52
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=91.91 E-value=0.24 Score=52.15 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=51.5
Q ss_pred hcCCCeEEEeehhhHHhhhc-----CCceEEEEEeCCCceEEEEeeCCeecc-cCcEEecchHHHHHHHHHHHHHh
Q 007609 264 DLRFASAVVHQEGLAAVFGN-----GLSTACVVNMGAQVTSVICVEDGVALP-NTEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 264 ~~gf~~v~~~~esvlA~fga-----G~stg~VVDiGa~~TsV~pV~dG~~l~-~s~~~l~~GG~dit~~l~~lL~~ 333 (596)
.+.+..|.+.+|+++|.|.. ...+.+|||||+.+|.++-|.++.... .+....+.|-..+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 34577999999999999875 235789999999999999888776443 33345688999999999988864
No 53
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=90.37 E-value=1.4 Score=48.24 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCC---CeEEEeehhhHHhhhcCC----
Q 007609 213 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRF---ASAVVHQEGLAAVFGNGL---- 285 (596)
Q Consensus 213 ~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf---~~v~~~~esvlA~fgaG~---- 285 (596)
|-+.++.|.+.-| ++-++.|++-. --+|+|+-..-.+..-+++++.|-...|= ...-=--||++|..|+|.
T Consensus 61 D~~al~~iv~~eY-~~Agi~p~~I~-TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S 138 (473)
T PF06277_consen 61 DAEALKEIVEEEY-RKAGITPEDID-TGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALS 138 (473)
T ss_pred CHHHHHHHHHHHH-HHcCCCHHHCc-cccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHh
Confidence 6889999999988 67899887642 22788887766555555677777654441 111123489999999994
Q ss_pred ----ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHH
Q 007609 286 ----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGED 322 (596)
Q Consensus 286 ----stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~d 322 (596)
.+-+=+|||.++|.++-..+|.++.. -.+++||+.
T Consensus 139 ~~~~~~V~NiDIGGGTtN~avf~~G~v~~T--~cl~IGGRL 177 (473)
T PF06277_consen 139 KEHHTVVANIDIGGGTTNIAVFDNGEVIDT--ACLDIGGRL 177 (473)
T ss_pred hhhCCeEEEEEeCCCceeEEEEECCEEEEE--EEEeeccEE
Confidence 34455799999999999999999954 568999984
No 54
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.26 E-value=1.7 Score=49.33 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=67.2
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc-------eEEEEEeCCCceEEEEee--CCe-ecc
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-------TACVVNMGAQVTSVICVE--DGV-ALP 310 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~s-------tg~VVDiGa~~TsV~pV~--dG~-~l~ 310 (596)
+|+.+|..|+... ++.+.-.-.-.|++-+-++.++-||+.++|+. +-||.|.|+....|+.+. +|. .+.
T Consensus 146 aviTVPa~F~~~Q-r~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vk 224 (620)
T KOG0101|consen 146 AVVTVPAYFNDSQ-RAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVK 224 (620)
T ss_pred EEEEecCCcCHHH-HHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhh
Confidence 5777776777654 45666666778999999999999999998853 459999999999888874 454 233
Q ss_pred cCcEEecchHHHHHHHHHHH
Q 007609 311 NTEKTLPFGGEDISRCLLWT 330 (596)
Q Consensus 311 ~s~~~l~~GG~dit~~l~~l 330 (596)
.+....+.||.|+++.|...
T Consensus 225 at~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 225 ATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred hhcccccccchhhhHHHHHH
Confidence 34455789999998887653
No 55
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=3.2 Score=47.60 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=65.7
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC----------ceEEEEEeCCCceEEEEeeCCeec-
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----------STACVVNMGAQVTSVICVEDGVAL- 309 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~----------stg~VVDiGa~~TsV~pV~dG~~l- 309 (596)
+|+-+|+.|+..+.+.+++- -+-.|..-++++.+..+++..+|. ..-+|-|+|+++|+.+-|.--.+-
T Consensus 161 ~ViTVP~~F~qaeR~all~A-a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~ 239 (902)
T KOG0104|consen 161 MVITVPPFFNQAERRALLQA-AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKT 239 (902)
T ss_pred eEEeCCcccCHHHHHHHHHH-HHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeecc
Confidence 48888888887775545443 345678889999999999977774 357999999999999988521111
Q ss_pred -------cc-----CcEEecchHHHHHHHHHHHHHh
Q 007609 310 -------PN-----TEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 310 -------~~-----s~~~l~~GG~dit~~l~~lL~~ 333 (596)
+. ..-....||..+|..|...|..
T Consensus 240 k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 240 KEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 11 1123467899999998877653
No 56
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.85 E-value=2.9 Score=37.28 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=39.6
Q ss_pred EEEEeCCCceEEEEeeCCeecccCcEEecch--------HHHHH--HHHHHHHHhcCCCCCcccccccccccHHHHHHH-
Q 007609 289 CVVNMGAQVTSVICVEDGVALPNTEKTLPFG--------GEDIS--RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRI- 357 (596)
Q Consensus 289 ~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~G--------G~dit--~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~l- 357 (596)
++||||+++|.++-..+|.... ..-+++| |.+|| +-+.+-++. ....+|++
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~----------------a~~~AE~~~ 63 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI----------------AIEEAERLA 63 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT------------------HHHHHHH-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH----------------HHHHHHHHh
Confidence 7899999999999888877654 5678999 99999 777766642 23457777
Q ss_pred HHhceecc
Q 007609 358 KESYCEIK 365 (596)
Q Consensus 358 Ke~~c~v~ 365 (596)
|.++..+.
T Consensus 64 k~~i~~v~ 71 (120)
T PF14450_consen 64 KCEIGSVY 71 (120)
T ss_dssp HHHH--S-
T ss_pred CCeeeEEE
Confidence 77765443
No 57
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=85.30 E-value=1.7 Score=44.81 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCeEEEeeh---hhHHhh----hc-CCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHH
Q 007609 256 EMLSIVLRDLRFASAVVHQE---GLAAVF----GN-GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 327 (596)
Q Consensus 256 ~l~eilfe~~gf~~v~~~~e---svlA~f----ga-G~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l 327 (596)
++++.+.+..|++ +-++.. +-++.. +. ....++|||||.++|.++.+.+|.+.. ...+++|.--+++.+
T Consensus 75 ~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 75 EFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF--SQSLPLGAVRLTERF 151 (285)
T ss_dssp HHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE--EEEES--HHHHHHHH
T ss_pred HHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE--eeeeehHHHHHHHHH
Confidence 4777778888876 444442 222222 22 567899999999999999999999874 578999998888876
Q ss_pred H
Q 007609 328 L 328 (596)
Q Consensus 328 ~ 328 (596)
.
T Consensus 152 ~ 152 (285)
T PF02541_consen 152 F 152 (285)
T ss_dssp S
T ss_pred h
Confidence 4
No 58
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.07 E-value=7.7 Score=44.30 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=80.3
Q ss_pred ccHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC------
Q 007609 212 QVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------ 285 (596)
Q Consensus 212 ~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~------ 285 (596)
+.+..+-.=+..+-.+.|.-+-.| ||+-+|..|...+.|-+++.. .-.|+.-+-++.+.-|++.++|.
T Consensus 116 Qv~Am~l~klk~~ae~~l~~~v~D-----cvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP 189 (727)
T KOG0103|consen 116 QVLAMLLTKLKATAEKNLKSPVSD-----CVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLP 189 (727)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-----eeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCC
Confidence 345554444444444555433233 688888888888766666653 57899999999999999988884
Q ss_pred ------ceEEEEEeCCCceEEEEee--CCeec-ccCcEEecchHHHHHHHHHHHHHh
Q 007609 286 ------STACVVNMGAQVTSVICVE--DGVAL-PNTEKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 286 ------stg~VVDiGa~~TsV~pV~--dG~~l-~~s~~~l~~GG~dit~~l~~lL~~ 333 (596)
.+-+-||+||+.++++-+- -|..- -.+.---.+||++.++.|.+....
T Consensus 190 ~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 190 ENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred CcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHH
Confidence 2368899999999887663 35422 223334589999999999876654
No 59
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=84.71 E-value=5.2 Score=41.00 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc-----eEEEEEeCCCceEEEEee-CCeecccCcEEecchHHHHHHHH
Q 007609 254 IKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE-DGVALPNTEKTLPFGGEDISRCL 327 (596)
Q Consensus 254 vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~s-----tg~VVDiGa~~TsV~pV~-dG~~l~~s~~~l~~GG~dit~~l 327 (596)
.+++.+.|=+++|++.-.-.-|+-+|..|+=.| --.|+|+|+++|..+-+. ||.+. .+++-=+|+-+|-.+
T Consensus 97 M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mVTmlI 173 (332)
T PF08841_consen 97 MQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMVTMLI 173 (332)
T ss_dssp CHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHHHHHH
T ss_pred HHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhhHHHH
Confidence 346788888999999999999999999998443 247899999999988885 46553 456677788888776
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHh
Q 007609 328 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 360 (596)
Q Consensus 328 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 360 (596)
..-|- -.|+.++|+||+.
T Consensus 174 ~sELG---------------l~d~~lAE~IKky 191 (332)
T PF08841_consen 174 NSELG---------------LEDRELAEDIKKY 191 (332)
T ss_dssp HHHCT----------------S-HHHHHHHHHS
T ss_pred HHhhC---------------CCCHHHHHHhhhc
Confidence 65442 1378999999964
No 60
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=81.61 E-value=1.8 Score=45.03 Aligned_cols=32 Identities=34% Similarity=0.434 Sum_probs=23.2
Q ss_pred Hhh-hcCCceEEEEEeCCCceEEEEeeCCeecc
Q 007609 279 AVF-GNGLSTACVVNMGAQVTSVICVEDGVALP 310 (596)
Q Consensus 279 A~f-gaG~stg~VVDiGa~~TsV~pV~dG~~l~ 310 (596)
+.+ -.|..++++||||..+|.|++|.||.+..
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 444 55788999999999999999999999864
No 61
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=81.21 E-value=10 Score=39.98 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcccceeeecCC---CCChHH--HHHHHHHHHHhcCCCeEEEeeh-h------------
Q 007609 215 EDLYAIWDWILTEKLHIPRSERNLYSAILVLPE---SFDNRE--IKEMLSIVLRDLRFASAVVHQE-G------------ 276 (596)
Q Consensus 215 ~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~---~~~~~~--vr~l~eilfe~~gf~~v~~~~e-s------------ 276 (596)
+.|...+..++. .+. +.+. .+|.++-. .|..+. |+.+++.+-+.|+-+ ++|.+. .
T Consensus 36 ~~L~~~l~~~~~-~~~--~~~~---~avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~~-~~i~~s~GG~~s~~~a~~~p 108 (318)
T TIGR03123 36 DKLAETLKEISQ-DLS--SADN---VAVTMTGELADCFEDKAEGVEFILAAVESAFGSP-VSVFASDGGFVSAEEALTNP 108 (318)
T ss_pred hHHHHHHHHHHH-hcC--ccce---EEEEeehhhhhhhcCHHHHHHHHHHHHHHhcCCC-eEEEecCCCCccHHHHHHhH
Confidence 456666666663 343 2222 26777754 454443 556788888888653 444332 1
Q ss_pred --------h--HHhhhcCCceEEEEEeCCCceEEEEeeCCeeccc
Q 007609 277 --------L--AAVFGNGLSTACVVNMGAQVTSVICVEDGVALPN 311 (596)
Q Consensus 277 --------v--lA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~ 311 (596)
+ ++.++.....+++||||..+|.|++|.+|.+...
T Consensus 109 v~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 109 LDVAAANWLATAQLIAKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HHHHHhhHHHHHHHHHhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 1 1223334678999999999999999999998743
No 62
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=70.61 E-value=38 Score=37.96 Aligned_cols=92 Identities=23% Similarity=0.300 Sum_probs=66.6
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc-----eEEEEEeCCCceEEE--EeeCCeecc-cC
Q 007609 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVI--CVEDGVALP-NT 312 (596)
Q Consensus 241 ~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~s-----tg~VVDiGa~~TsV~--pV~dG~~l~-~s 312 (596)
+|+-+|..|+. ..|+.+.-+..-.|...+-++.++-+|+.++|+. +-.|-|+|.+...|+ -+++|+-.- .+
T Consensus 163 avvtvpAyfnd-sqRqaTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksT 241 (640)
T KOG0102|consen 163 AVITVPAYFND-SQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKST 241 (640)
T ss_pred eeeccHHHHhH-HHHHHhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEec
Confidence 35555444444 4456777777778888999999999999998863 568999999876554 446787442 34
Q ss_pred cEEecchHHHHHHHHHHHHHh
Q 007609 313 EKTLPFGGEDISRCLLWTQRH 333 (596)
Q Consensus 313 ~~~l~~GG~dit~~l~~lL~~ 333 (596)
-..+-.||.|++.++..++-.
T Consensus 242 ngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 242 NGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred cCccccChhHHHHHHHHHHHH
Confidence 456788999999999877643
No 63
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=62.67 E-value=11 Score=42.42 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=33.6
Q ss_pred eEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHH
Q 007609 287 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 328 (596)
Q Consensus 287 tg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~ 328 (596)
.++|||||.++|.++.+.+|.+. ....+++|.--+++.|.
T Consensus 133 ~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 172 (496)
T PRK11031 133 QRLVVDIGGASTELVTGTGAQAT--SLFSLSMGCVTWLERYF 172 (496)
T ss_pred CEEEEEecCCeeeEEEecCCcee--eeeEEeccchHHHHHhc
Confidence 58999999999999999998876 45689999988776543
No 64
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=61.68 E-value=3.2 Score=42.39 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=36.7
Q ss_pred cCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeee
Q 007609 496 CSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 552 (596)
Q Consensus 496 ~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla 552 (596)
.+|+++||.++-+|+.+.|+++|... . ..+.|.. +.+|++..=+||+++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-~-----~~~~v~~-~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-K-----MAVAAEN-HPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-C-----cceEecC-CCcchHHHHHHHHHcC
Confidence 36999999999999999999999532 0 1233432 3478888778887764
No 65
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=60.78 E-value=3.8 Score=44.15 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=39.2
Q ss_pred HhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeee
Q 007609 494 LFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 552 (596)
Q Consensus 494 L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla 552 (596)
+-..|+++||.++-+||...|++.|....+.. +|.| +.+|++..=+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~----~V~V---p~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYGEV----QINI---DPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccCCC----eEec---CCCccHHHHHHHHHhC
Confidence 45689999999999999999999996543211 2344 2478888888888765
No 66
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=60.52 E-value=8.8 Score=39.98 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=34.4
Q ss_pred ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHH
Q 007609 286 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 328 (596)
Q Consensus 286 stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~ 328 (596)
..++|||||.++|.++.+.+|.+. ....+++|.--+++.|.
T Consensus 125 ~~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 125 ADGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVRLTEQFF 165 (300)
T ss_pred CCcEEEEecCCeEEEEEecCCCEe--EEEEEccceEEhHHhhC
Confidence 346999999999999999988776 45689999988887764
No 67
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=56.72 E-value=47 Score=33.79 Aligned_cols=46 Identities=33% Similarity=0.344 Sum_probs=38.1
Q ss_pred HhcCCCeEEEeehhhHHhhhcC-------CceEEEEEeCCCceEEEEeeCCeec
Q 007609 263 RDLRFASAVVHQEGLAAVFGNG-------LSTACVVNMGAQVTSVICVEDGVAL 309 (596)
Q Consensus 263 e~~gf~~v~~~~esvlA~fgaG-------~stg~VVDiGa~~TsV~pV~dG~~l 309 (596)
...+... .+.....||.+|+= ....||||||-+.|-.+-|.+|.+.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 4444444 89999999999874 3578999999999999999999876
No 68
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=55.25 E-value=3.8 Score=42.54 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHhcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeee
Q 007609 473 GLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 552 (596)
Q Consensus 473 ~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla 552 (596)
||..+|.+-+... -.|..+-..|+++||.++-+|+...|+++|.. +|.+++ .+|++..=+||+++|
T Consensus 221 Gl~~sia~rv~~~---~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg~---------~v~~~p--~~p~~~GAlGAAL~A 286 (293)
T TIGR03192 221 AYCQAMAERVVSL---LERIGVEEGFFITGGIAKNPGVVKRIERILGI---------KAVDTK--IDSQIAGALGAALFG 286 (293)
T ss_pred HHHHHHHHHHHHH---hcccCCCCCEEEECcccccHHHHHHHHHHhCC---------CceeCC--CCccHHHHHHHHHHH
Confidence 5555555443221 11234456799999999999999999998852 233232 468888888999987
Q ss_pred c
Q 007609 553 I 553 (596)
Q Consensus 553 ~ 553 (596)
.
T Consensus 287 ~ 287 (293)
T TIGR03192 287 Y 287 (293)
T ss_pred H
Confidence 3
No 69
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=54.88 E-value=3.7 Score=44.38 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHhcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeee
Q 007609 472 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 551 (596)
Q Consensus 472 ~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIl 551 (596)
.||..+|.+-+... .-.+..+-..|+++||.++.+|+...|++.|.. +|.|. .+|++..=+||+++
T Consensus 335 AGl~~SIa~rv~~~--l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg~---------~iivP---e~pq~~GAiGAAL~ 400 (404)
T TIGR03286 335 AAACHSVAEQVYEQ--QLQEIDVREPVILVGGTSLIEGLVKALGDLLGI---------EVVVP---EYSQYIGAVGAALL 400 (404)
T ss_pred HHHHHHHHHHHHHH--HhhcCCCCCcEEEECChhhhHHHHHHHHHHhCC---------cEEEC---CcccHHHHHHHHHH
Confidence 35555555554420 011123445599999999999999999998852 34443 47888888999988
Q ss_pred ec
Q 007609 552 GI 553 (596)
Q Consensus 552 a~ 553 (596)
|+
T Consensus 401 A~ 402 (404)
T TIGR03286 401 AS 402 (404)
T ss_pred hc
Confidence 74
No 70
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=52.34 E-value=9.8 Score=42.52 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCeEEEee---hhhHHhhhc----C-CceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHH
Q 007609 256 EMLSIVLRDLRFASAVVHQ---EGLAAVFGN----G-LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 327 (596)
Q Consensus 256 ~l~eilfe~~gf~~v~~~~---esvlA~fga----G-~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l 327 (596)
+++..+-+.+|++ |.++. |+-++.+|. + ...+||+|||.++|.++=+.+..+. ....+++|+--+|+.+
T Consensus 92 eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 92 EFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTERF 168 (492)
T ss_pred HHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehhh
Confidence 3555555556665 33322 333333332 2 5679999999999999988766555 3567888877766655
Q ss_pred H
Q 007609 328 L 328 (596)
Q Consensus 328 ~ 328 (596)
.
T Consensus 169 ~ 169 (492)
T COG0248 169 F 169 (492)
T ss_pred c
Confidence 4
No 71
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=51.46 E-value=10 Score=38.43 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCceEEEEeeCCee
Q 007609 286 STACVVNMGAQVTSVICVEDGVA 308 (596)
Q Consensus 286 stg~VVDiGa~~TsV~pV~dG~~ 308 (596)
.+++.||+|..+|.|.||.+|..
T Consensus 130 dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 130 DSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CceEEEecCCcccceEeecchhh
Confidence 57999999999999999999973
No 72
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=46.21 E-value=48 Score=34.95 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHH---HhcCCCeEEEeehhhHHhhhcCC----
Q 007609 213 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVL---RDLRFASAVVHQEGLAAVFGNGL---- 285 (596)
Q Consensus 213 ~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilf---e~~gf~~v~~~~esvlA~fgaG~---- 285 (596)
+-+.++.+...-+ ..-+|.|+.-. .-+|+++-..-.++.-+..+..|- -+|=+...--.-||+.|--|+|.
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi~-sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESID-SGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhccc-cccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchh
Confidence 5677888877766 45788876532 227888866654444344443333 23333333334577888778874
Q ss_pred --ceEEE--EEeCCCceEEEEeeCCeecccCcEEecchHHHH
Q 007609 286 --STACV--VNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 323 (596)
Q Consensus 286 --stg~V--VDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~di 323 (596)
..+|| +|||.++|..+-..-|.++..+ .|++||+-+
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~dTa--CLdiGGRLi 180 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVSDTA--CLDIGGRLI 180 (473)
T ss_pred hhhceEEEEEeccCCccceeeecccccccce--eeecCcEEE
Confidence 23444 6899999999999999998654 589999854
No 73
>PRK10854 exopolyphosphatase; Provisional
Probab=44.21 E-value=24 Score=39.71 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHH
Q 007609 286 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 327 (596)
Q Consensus 286 stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l 327 (596)
..++|||||.++|.++-+.+|.+.. ...+++|.--+++.|
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~vrl~e~f 176 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSFAQLY 176 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeE--eEEEecceeeHHhhh
Confidence 3589999999999999999986553 345688887777643
No 74
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=38.92 E-value=78 Score=31.82 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHh----hhcCCceE
Q 007609 213 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAV----FGNGLSTA 288 (596)
Q Consensus 213 ~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~----fgaG~stg 288 (596)
.|+.+.+.+..++ +++++++.+.. .|.++ .+.+..+ . |- + .++.|-+|-+ +-... ..
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i~---~i~~T--g~~~~~v---~---~~--~----~~~~ei~~~~~g~~~~~~~-~~ 93 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPID---KIVAT--GYGRHKV---G---FA--D----KIVTEISCHGKGANYLAPE-AR 93 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhhee---EEEEE--CCCcccc---c---cc--C----CceEEhhHHHHHHHHHCCC-CC
Confidence 6888888888887 56666655442 33332 2322211 1 11 1 2345555543 33333 34
Q ss_pred EEEEeCCCceEEEEeeCCeecccC-cEEecchHHHHHHHHHHHH
Q 007609 289 CVVNMGAQVTSVICVEDGVALPNT-EKTLPFGGEDISRCLLWTQ 331 (596)
Q Consensus 289 ~VVDiGa~~TsV~pV~dG~~l~~s-~~~l~~GG~dit~~l~~lL 331 (596)
.|||||++.|.+.-+.+|.+..-. -..+..|+...++.+...|
T Consensus 94 ~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 94 GVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred EEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 599999999999999999876211 1235677777777666544
No 75
>PRK13317 pantothenate kinase; Provisional
Probab=34.62 E-value=17 Score=37.59 Aligned_cols=73 Identities=19% Similarity=0.089 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHhcCChhHHHHHhcCeEEEc-CCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceee
Q 007609 472 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIG-GVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 550 (596)
Q Consensus 472 ~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvG-G~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSI 550 (596)
.+|..+|.+.|...+-.-.|..-..+|+++| |.+..|++.+.|++.+...- .++.++ .++++..=+||++
T Consensus 200 asl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~------~~~~~p---~~~~~~gAlGAaL 270 (277)
T PRK13317 200 AGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRN------CTPIFL---ENGGYSGAIGALL 270 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCC------ceEEec---CCCchhHHHHHHH
Confidence 3566666665544311112333347899999 68999999999998775210 133433 4678888888887
Q ss_pred eec
Q 007609 551 LGI 553 (596)
Q Consensus 551 la~ 553 (596)
++.
T Consensus 271 ~a~ 273 (277)
T PRK13317 271 LAT 273 (277)
T ss_pred Hhh
Confidence 764
No 76
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=33.62 E-value=1.5e+02 Score=32.29 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhH----HhhhcC--Cc
Q 007609 213 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLA----AVFGNG--LS 286 (596)
Q Consensus 213 ~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvl----A~fgaG--~s 286 (596)
.-+..+.+++.++ ++.++...+.. .+.+ .-|-+. ++..+| +...+ +.|-.| |.|=.. ..
T Consensus 177 ~~~~a~~~l~~~l-~~~Gl~~~di~---~i~~--TGyGR~----~i~~~~---~ad~i--v~EItaha~GA~~L~p~~~~ 241 (404)
T TIGR03286 177 VIESAEEAVERAL-EEAGVSLEDVE---AIGT--TGYGRF----TIGEHF---GADLI--QEELTVNSKGAVYLADKQEG 241 (404)
T ss_pred HHHHHHHHHHHHH-HHcCCCcccee---EEEe--eeecHH----HHhhhc---CCCce--EEEEhhHHHHHHHhcccCCC
Confidence 3566788888888 45777655542 2333 334433 322222 22222 222222 222222 23
Q ss_pred eEEEEEeCCCceEEEEeeCCeecccCcEEec-c--hHHHHHHHHH
Q 007609 287 TACVVNMGAQVTSVICVEDGVALPNTEKTLP-F--GGEDISRCLL 328 (596)
Q Consensus 287 tg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~-~--GG~dit~~l~ 328 (596)
...|+|||.|-+.+.-+.+|.+.. -+.+=. - +|+.|...-.
T Consensus 242 v~TIIDIGGQDsK~I~l~~G~v~d-F~MNdkCAAGTGrFLE~~A~ 285 (404)
T TIGR03286 242 PATVIDIGGMDNKAISVWDGIPDN-FTMGGICAGASGRFLEMTAK 285 (404)
T ss_pred CcEEEEeCCCceEEEEEcCCceee-EEEcCcccccCcHHHHHHHH
Confidence 689999999999999998887642 122211 2 3666655443
No 77
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=32.89 E-value=14 Score=39.48 Aligned_cols=44 Identities=30% Similarity=0.350 Sum_probs=35.7
Q ss_pred eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeec
Q 007609 498 IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 553 (596)
Q Consensus 498 IvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~ 553 (596)
|+++||+++..|+..-|++.|.. +|.+. ..+++.-=+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg~---------~V~vP---~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLGR---------KVIVP---PYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhCC---------eeecC---CccchhhHHHHHHHHh
Confidence 99999999999999999998862 34443 4677888888888876
No 78
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.74 E-value=43 Score=39.07 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=26.1
Q ss_pred HhhhcCCce--EEEEEeCCCceEEEEeeCCeecc
Q 007609 279 AVFGNGLST--ACVVNMGAQVTSVICVEDGVALP 310 (596)
Q Consensus 279 A~fgaG~st--g~VVDiGa~~TsV~pV~dG~~l~ 310 (596)
|+|=+|... ++++|||..+|.|+-+.+|.+..
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 444456666 99999999999999999888663
No 79
>PRK03011 butyrate kinase; Provisional
Probab=30.61 E-value=29 Score=37.23 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCceEEEEeeCCeecccC
Q 007609 286 STACVVNMGAQVTSVICVEDGVALPNT 312 (596)
Q Consensus 286 stg~VVDiGa~~TsV~pV~dG~~l~~s 312 (596)
.+.+|+.+|.+. +++.|.||.++..+
T Consensus 176 ~n~I~~hLGtGi-g~gai~~Gk~idgs 201 (358)
T PRK03011 176 LNLIVAHLGGGI-SVGAHRKGRVIDVN 201 (358)
T ss_pred CcEEEEEeCCCc-eeeEEECCEEEecC
Confidence 488999999976 89999999998653
No 80
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.64 E-value=86 Score=32.08 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=33.7
Q ss_pred EEEeehhhHHhhhcCC----ceEEEEEeCCCceEEEEeeCCeec
Q 007609 270 AVVHQEGLAAVFGNGL----STACVVNMGAQVTSVICVEDGVAL 309 (596)
Q Consensus 270 v~~~~esvlA~fgaG~----stg~VVDiGa~~TsV~pV~dG~~l 309 (596)
+++...-++|.+|+-. .-++|||+|.+.|..+-|.++.+.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 6777888888888754 468999999999999999988754
No 81
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=28.99 E-value=36 Score=36.64 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=19.8
Q ss_pred hcCeEEEcCCCCcCChHHHHHHHHhh
Q 007609 495 FCSIQLIGGVALTGGLIPAVEERVLH 520 (596)
Q Consensus 495 ~~nIvLvGG~S~i~Gf~~RL~~eL~~ 520 (596)
-..|+|+|||+.=+-|-++|++++..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 35799999999998888888888753
No 82
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=26.41 E-value=68 Score=32.25 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=30.2
Q ss_pred CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceee
Q 007609 497 SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 550 (596)
Q Consensus 497 nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSI 550 (596)
.|+++||++..+++.+.|.+.|.. .|.+. .++++.+=+||++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg~---------~v~~~---~~~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLGM---------KVITP---PEPQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhCC---------cEEcC---CCccHHHHHHHHh
Confidence 799999999999999999998831 23332 3455555566654
No 83
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=25.92 E-value=36 Score=36.39 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=36.1
Q ss_pred HHhcCCCeEEEeehhhHHhhhcCC--c--eEEEEEeCCCceEEEEeeCCeecccCc
Q 007609 262 LRDLRFASAVVHQEGLAAVFGNGL--S--TACVVNMGAQVTSVICVEDGVALPNTE 313 (596)
Q Consensus 262 fe~~gf~~v~~~~esvlA~fgaG~--s--tg~VVDiGa~~TsV~pV~dG~~l~~s~ 313 (596)
.+++||..+..-.-+--+....|+ . +-+++-+|.+.. ++.|.||.++..+.
T Consensus 146 ~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig-~~ai~~Gk~vdgs~ 200 (351)
T TIGR02707 146 ERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGIS-VAAHRKGRVIDVNN 200 (351)
T ss_pred hhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCce-eeeEECCEEEEcCC
Confidence 477888877655444444444554 3 789999999765 99999999986543
No 84
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=25.58 E-value=45 Score=34.87 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=11.4
Q ss_pred cCCc---EEEEcCCCce
Q 007609 16 RGSN---LVVINPGSAN 29 (596)
Q Consensus 16 ~~~~---~iVihpGS~~ 29 (596)
-|-+ .||||||+.+
T Consensus 142 lG~~~~~~vViHpG~~~ 158 (303)
T PRK02308 142 MGIDDSSKINIHVGGAY 158 (303)
T ss_pred CCCCCCCEEEECCCccC
Confidence 3666 9999999963
No 85
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=25.01 E-value=48 Score=36.00 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=25.7
Q ss_pred cEEEEcCCCceeeeeccCCCCCCccceeeEEec
Q 007609 19 NLVVINPGSANIRIGLAQHDTPLNIPHCIARRT 51 (596)
Q Consensus 19 ~~iVihpGS~~lriG~asd~~P~~ip~~iAr~~ 51 (596)
||+||+|||..+++.+=.+..+..+-.-.+.+.
T Consensus 1 KILVIN~GSSS~Kfalf~~~~~~~l~~g~~e~i 33 (388)
T PF00871_consen 1 KILVINPGSSSTKFALFDMDSGEVLASGLVERI 33 (388)
T ss_dssp EEEEEEEESSEEEEEEEETTTTEEEEEEEEEST
T ss_pred CEEEEcCChHhheeeeEECCCCCeeeechheec
Confidence 799999999999999988886655444455543
No 86
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=24.75 E-value=42 Score=27.52 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=11.2
Q ss_pred hcCCcEEEEcCCC
Q 007609 15 ERGSNLVVINPGS 27 (596)
Q Consensus 15 ~~~~~~iVihpGS 27 (596)
-||++|++||||.
T Consensus 64 iRG~nV~~i~p~~ 76 (76)
T cd01732 64 LNGNNICMLVPGG 76 (76)
T ss_pred EeCCeEEEEECCC
Confidence 3699999999994
No 87
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=20.90 E-value=45 Score=33.09 Aligned_cols=82 Identities=17% Similarity=0.313 Sum_probs=47.4
Q ss_pred hHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcc--cceeeH--
Q 007609 489 DLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGR--DAWIHR-- 564 (596)
Q Consensus 489 d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~--~~wItr-- 564 (596)
|+-+---+.|+++|.+| .||... .++....|+ -+|.|+.....|.-.+|.||.+|+.+-.-. ++++..
T Consensus 70 DldkyAesDvviVGAGS--aGLsAA--Y~I~~~rPd----lkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~Eig 141 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGS--AGLSAA--YVIAKNRPD----LKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIG 141 (328)
T ss_pred HHHhhhccceEEECCCc--ccccee--eeeeccCCC----ceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhC
Confidence 33333345699999887 344322 122223333 267777666677888999999999874211 222211
Q ss_pred HHHHhcCcceeeec
Q 007609 565 EDWIRNGIHIGSGR 578 (596)
Q Consensus 565 ~EYee~G~~il~rk 578 (596)
--||+.|.-++-+.
T Consensus 142 vpYedegdYVVVKH 155 (328)
T KOG2960|consen 142 VPYEDEGDYVVVKH 155 (328)
T ss_pred CCcccCCCEEEEee
Confidence 13777787666543
No 88
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=20.48 E-value=2.1e+02 Score=28.97 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCCCcccceeeecCC----CCChHHHH-HHHHHHHHhcCCCeEEEeehhhHHhhhcCCce
Q 007609 213 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPE----SFDNREIK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLST 287 (596)
Q Consensus 213 ~~~dle~Iw~~~l~~~L~i~~~d~~~y~~VLvip~----~~~~~~vr-~l~eilfe~~gf~~v~~~~esvlA~fgaG~st 287 (596)
..+.+...++.++ ++++.++.+.. .+.+.-. ......+. ++.. + .+.+...+..++++.-. .
T Consensus 40 ~~~~i~~~i~~~~-~~~~~~~~~i~---~~~~g~aG~~~~~~~~~~~~~~~~---~-----~v~~~~Da~~al~~~~~-~ 106 (271)
T PF01869_consen 40 AMENIKEAIEEAL-SQAGLSPDDIA---AICIGAAGYGRAGDEQEFQEEIVR---S-----EVIVVNDAAIALYGATA-E 106 (271)
T ss_dssp HHHHHHHHHHHHH-HHHTTSTTCCC---EEEEEEEEEEETTTTTHHHHHHHH---H-----EEEEEEHHHHHHHHHST-S
T ss_pred hhhHHHHHHHHHH-HHcCCCccccc---eeeeeEeeecCcccccchhhcceE---E-----EEEEEHHHHHHhCCCCC-C
Confidence 3455667777777 56777766543 2211111 12222221 2221 2 89999999999998877 6
Q ss_pred EEEEEeCCCceEEEEee-CCeec
Q 007609 288 ACVVNMGAQVTSVICVE-DGVAL 309 (596)
Q Consensus 288 g~VVDiGa~~TsV~pV~-dG~~l 309 (596)
.-||+||.+.+.+.-+. +|...
T Consensus 107 ~giv~I~GTGS~~~~~~~~g~~~ 129 (271)
T PF01869_consen 107 DGIVVIAGTGSIAYGRDRDGRVI 129 (271)
T ss_dssp SEEEEEESSSEEEEEEETTSEEE
T ss_pred cEEEEEcCCCceEEEEEcCCcEE
Confidence 77888888887777777 77655
Done!