BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007610
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 176/560 (31%), Positives = 268/560 (47%), Gaps = 62/560 (11%)
Query: 35 WPKP----EATNLAAEFKIQAPMQTQLSSAVDRYLKLIKSEHHHHLVRPSINISSSPPLQ 90
WP+P + N ++ + + L L ++ V +I S+P L
Sbjct: 47 WPRPTGEADLGNFLSKINLNSIEVKILKKGATDDLMEAAAKRFKEQVSLAIPRGSTPKLT 106
Query: 91 TLSISVDNIS-----VPLTHGVNESYSLTIT---SDENTAYLVASTVWGAMRGLETFSQL 142
++ V ++ + ++ESY L ++ +D A + A++ +G GLET SQL
Sbjct: 107 GKAVDVYLVNENPNEKAFSLEMDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQL 166
Query: 143 V----WGNPSCVAVGIYVWDEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHW 198
+ + + + D+P++ +RG+LLDT+RNYY ++ I RTI AM+A KLN FHW
Sbjct: 167 FVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHW 226
Query: 199 HITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSG 258
HITDS SFP + PNL G+ +YT + +++++ +GL+ GVRV+PE D P H G
Sbjct: 227 HITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVG 286
Query: 259 SWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIF- 317
++ C W + EP GQLNP + + + ++ ++A +F
Sbjct: 287 E-GWQDTDLTVCFKAEPWKS-------YCGEPPCGQLNPTKDELYQYLEDIYSDMAEVFD 338
Query: 318 PENFFHSGGDEILPACWKSDSLIQSFLSTG--GTLSEVLEKFINFVFPFIVALDKT---- 371
+ FH GGDE+ ACW S IQ+F+ E K N+ A DK
Sbjct: 339 TTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQ--KAQDKAYKAF 396
Query: 372 -----AIYWEDVILDNEIKVDPSYLYPEYTIFQSWKNGTE-STKKIVQAGYRVIVSSSDY 425
I W L N +D YL + I Q W G + K +++ GYR+I+S+ D
Sbjct: 397 GKKLPLILWTST-LTNYKHID-DYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDA 454
Query: 426 YYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDIXXXXXXXXXXXXX 485
Y DCG+G ++G G +WCSP+ WQ VY+ +
Sbjct: 455 LYFDCGYGAWVG---------------AGNNWCSPYIGWQKVYD-NSPAVIALEHRDQVL 498
Query: 486 XXXXALWSEQADGTVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVN 545
ALWSEQ+D + +D RLWPR +A+AE LW+ + +A R+ R R+V
Sbjct: 499 GGEAALWSEQSDTSTLDGRLWPRAAALAERLWA-----EPATSWQDAEYRMLHIRERLVR 553
Query: 546 RGIGAEPIQPLWCLQNPGMC 565
GI AE +QP WC QN G C
Sbjct: 554 MGIQAESLQPEWCYQNEGYC 573
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 265 bits (676), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 176/560 (31%), Positives = 268/560 (47%), Gaps = 62/560 (11%)
Query: 35 WPKP----EATNLAAEFKIQAPMQTQLSSAVDRYLKLIKSEHHHHLVRPSINISSSPPLQ 90
WP+P + N ++ + + L L ++ V +I S+P L
Sbjct: 44 WPRPTGEADLGNFLSKINLNSIEVKILKKGATDDLMEAAAKRFKEQVSLAIPRGSTPKLT 103
Query: 91 TLSISVDNIS-----VPLTHGVNESYSLTIT---SDENTAYLVASTVWGAMRGLETFSQL 142
++ V ++ + ++ESY L ++ +D A + A++ +G GLET SQL
Sbjct: 104 GKAVDVYLVNENPNEKAFSLEMDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQL 163
Query: 143 V----WGNPSCVAVGIYVWDEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHW 198
+ + + + D+P++ +RG+LLDT+RNYY ++ I RTI AM+A KLN FHW
Sbjct: 164 FVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHW 223
Query: 199 HITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSG 258
HITDS SFP + PNL G+ +YT + +++++ +GL+ GVRV+PE D P H G
Sbjct: 224 HITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVG 283
Query: 259 SWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIF- 317
++ C W + EP GQLNP + + + ++ ++A +F
Sbjct: 284 E-GWQDTDLTVCFKAEPWKS-------YCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFD 335
Query: 318 PENFFHSGGDEILPACWKSDSLIQSFLSTG--GTLSEVLEKFINFVFPFIVALDKT---- 371
+ FH GGDE+ ACW S IQ+F+ E K N+ A DK
Sbjct: 336 TTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQ--KAQDKAYKAF 393
Query: 372 -----AIYWEDVILDNEIKVDPSYLYPEYTIFQSWKNGTE-STKKIVQAGYRVIVSSSDY 425
I W L N +D YL + I Q W G + K +++ GYR+I+S+ D
Sbjct: 394 GKKLPLILWTST-LTNYKHID-DYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDA 451
Query: 426 YYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDIXXXXXXXXXXXXX 485
Y DCG+G ++G G +WCSP+ WQ VY+ +
Sbjct: 452 LYFDCGYGAWVG---------------AGNNWCSPYIGWQKVYD-NSPAVIALEHRDQVL 495
Query: 486 XXXXALWSEQADGTVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVN 545
ALWSEQ+D + +D RLWPR +A+AE LW+ + +A R+ R R+V
Sbjct: 496 GGEAALWSEQSDTSTLDGRLWPRAAALAERLWA-----EPATSWQDAEYRMLHIRERLVR 550
Query: 546 RGIGAEPIQPLWCLQNPGMC 565
GI AE +QP WC QN G C
Sbjct: 551 MGIQAESLQPEWCYQNEGYC 570
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 258 bits (659), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 174/560 (31%), Positives = 265/560 (47%), Gaps = 62/560 (11%)
Query: 35 WPKP----EATNLAAEFKIQAPMQTQLSSAVDRYLKLIKSEHHHHLVRPSINISSSPPLQ 90
WP+P + N ++ + + L L ++ V +I S+P L
Sbjct: 44 WPRPTGEADLGNFLSKINLNSIEVKILKKGATDDLMEAAAKRFKEQVSLAIPRGSTPKLT 103
Query: 91 TLSISVDNIS-----VPLTHGVNESYSLTIT---SDENTAYLVASTVWGAMRGLETFSQL 142
++ V ++ + ++ESY L ++ +D A + A++ +G GLET SQL
Sbjct: 104 GKAVDVYLVNENPNEKAFSLEMDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQL 163
Query: 143 V----WGNPSCVAVGIYVWDEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHW 198
+ + + + D+P++ +RG+LLDT+RNYY ++ I RTI AM+A KLN HW
Sbjct: 164 FVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTNHW 223
Query: 199 HITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSG 258
HITDS SFP + PNL G+ +YT + +++++ +GL+ GVRV+PE D P H G
Sbjct: 224 HITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVG 283
Query: 259 SWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIF- 317
++ C W + P GQLNP + + + ++ ++A +F
Sbjct: 284 E-GWQDTDLTVCFKAEPWKS-------YCVAPPCGQLNPTKDELYQYLEDIYSDMAEVFD 335
Query: 318 PENFFHSGGDEILPACWKSDSLIQSFLSTG--GTLSEVLEKFINFVFPFIVALDKT---- 371
+ FH GGDE+ ACW S IQ+F+ E K N+ A DK
Sbjct: 336 TTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQ--KAQDKAYKAF 393
Query: 372 -----AIYWEDVILDNEIKVDPSYLYPEYTIFQSWKNGTE-STKKIVQAGYRVIVSSSDY 425
I W L N +D YL + I Q W G + K +++ GYR+I+S+ D
Sbjct: 394 GKKLPLILWTST-LTNYKHID-DYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDA 451
Query: 426 YYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDIXXXXXXXXXXXXX 485
Y DCG+G ++G G +WCSP+ WQ VY+ +
Sbjct: 452 LYFDCGYGAWVG---------------AGNNWCSPYIGWQKVYD-NSPAVIALEHRDQVL 495
Query: 486 XXXXALWSEQADGTVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVN 545
ALWSEQ+D + +D RLWPR +A+AE LW+ + +A R+ R R V
Sbjct: 496 GGEAALWSEQSDTSTLDGRLWPRAAALAERLWA-----EPATSWQDAEYRMLHIRERFVR 550
Query: 546 RGIGAEPIQPLWCLQNPGMC 565
GI AE +QP WC QN G C
Sbjct: 551 MGIQAESLQPEWCYQNEGYC 570
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 161/464 (34%), Positives = 237/464 (51%), Gaps = 71/464 (15%)
Query: 108 NESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIY------VWDEPL 161
+ESY+L + E A L A+ VWGA+RGLETFSQLV+ + + G + + D P
Sbjct: 146 DESYTLLV--KEPVAVLKANRVWGALRGLETFSQLVYQD----SYGTFTINESTIIDSPR 199
Query: 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGS 221
FSHRG+L+DTSR+Y V IL+T+ AM+ NK NV HWHI D SFP + P L+ KGS
Sbjct: 200 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 259
Query: 222 YGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVS-CANKFWWPAGT 280
Y ++YTP+DV+ +IEY G+RV+PE DTPGH+ SW ++++ C ++
Sbjct: 260 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSR------- 312
Query: 281 KWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILPACWKSDSLI 340
+++L S G +NP T+ + + ++ +FP+ F H GGDE+ CW+S+ I
Sbjct: 313 --QNKLDS---FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKI 367
Query: 341 QSFLSTG--GTLSEVLEKF-INFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTI 397
Q F+ GT + LE F I V I ++K +I W++V D++ K+ P TI
Sbjct: 368 QDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEV-FDDKAKLAPG------TI 420
Query: 398 FQSWKNGT--ESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGG 455
+ WK+ E ++ +G+ VI+S+ +YLD G
Sbjct: 421 VEVWKDSAYPEELSRVTASGFPVILSAP--WYLDLISYG--------------------- 457
Query: 456 SWCSPFKTWQTVYNYD-IXXXXXXXXXXXXXXXXXALWSEQADGTVVDARLWPRTSAMAE 514
+ W+ Y + + LW E D T + RLWPR SA+ E
Sbjct: 458 ------QDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGE 511
Query: 515 ALWSGNRDETGKKRYAEATDRLNEWRHRMVNRGIGAEPIQPLWC 558
LWS + +A DRL R RMV RGI A+P+ +C
Sbjct: 512 RLWSSK----DVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 551
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 172/523 (32%), Positives = 255/523 (48%), Gaps = 74/523 (14%)
Query: 51 APMQTQLSSAVDRYLKLIKSEH--HHHLVRPSINISSSPPLQTLSISVDNISVPLTHGVN 108
P T L A RY I + HH L ++++ + + P +
Sbjct: 39 GPSCTLLEEAFRRYHGYIFGFYKWHHEPAEFQAKTQVQQLLVSITLQSECDAFP-NISSD 97
Query: 109 ESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIY------VWDEPLF 162
ESY+L + E A L A+ VWGA+RGLETFSQLV+ + + G + + D P F
Sbjct: 98 ESYTLLV--KEPVAVLKANRVWGALRGLETFSQLVYQD----SYGTFTINESTIIDSPRF 151
Query: 163 SHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSY 222
SHRG+L+DTSR+Y V IL+T+ AM+ NK NV HWHI D SFP + P L+ KGSY
Sbjct: 152 SHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSY 211
Query: 223 GEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVS-CANKFWWPAGTK 281
++YTP+DV+ +IEY G+RV+PE DTPGH+ SW ++++ C ++
Sbjct: 212 SLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSR-------- 263
Query: 282 WEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILPACWKSDSLIQ 341
+++L S G +NP T+ + + ++ +FP+ F H GGDE+ CW+S+ IQ
Sbjct: 264 -QNKLDS---FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQ 319
Query: 342 SFLSTG--GTLSEVLEKF-INFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTIF 398
F+ GT + LE F I V I ++K +I W++V D++ K+ P TI
Sbjct: 320 DFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEV-FDDKAKLAPG------TIV 372
Query: 399 QSWKNGT--ESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGS 456
+ WK+ E ++ +G+ VI+S+ +YLD G
Sbjct: 373 EVWKDSAYPEELSRVTASGFPVILSAP--WYLDLISYG---------------------- 408
Query: 457 WCSPFKTWQTVYNYD-IXXXXXXXXXXXXXXXXXALWSEQADGTVVDARLWPRTSAMAEA 515
+ W+ Y + + LW E D T + RLWPR SA+ E
Sbjct: 409 -----QDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGER 463
Query: 516 LWSGNRDETGKKRYAEATDRLNEWRHRMVNRGIGAEPIQPLWC 558
LWS + +A DRL R RMV RGI A+P+ +C
Sbjct: 464 LWSSK----DVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 502
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 161/464 (34%), Positives = 237/464 (51%), Gaps = 71/464 (15%)
Query: 108 NESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIY------VWDEPL 161
+ESY+L + E A L A+ VWGA+RGLETFSQLV+ + + G + + D P
Sbjct: 97 DESYTLLV--KEPVAVLKANRVWGALRGLETFSQLVYQD----SYGTFTINESTIIDSPR 150
Query: 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGS 221
FSHRG+L+DTSR+Y V IL+T+ AM+ NK NV HWHI D SFP + P L+ KGS
Sbjct: 151 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 210
Query: 222 YGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVS-CANKFWWPAGT 280
Y ++YTP+DV+ +IEY G+RV+PE DTPGH+ SW ++++ C ++
Sbjct: 211 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSR------- 263
Query: 281 KWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILPACWKSDSLI 340
+++L S G +NP T+ + + ++ +FP+ F H GGDE+ CW+S+ I
Sbjct: 264 --QNKLDS---FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKI 318
Query: 341 QSFLSTG--GTLSEVLEKF-INFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTI 397
Q F+ GT + LE F I V I ++K +I W++V D++ K+ P TI
Sbjct: 319 QDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEV-FDDKAKLAPG------TI 371
Query: 398 FQSWKNGT--ESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGG 455
+ WK+ E ++ +G+ VI+S+ +YLD G
Sbjct: 372 VEVWKDSAYPEELSRVTASGFPVILSAP--WYLDLISYG--------------------- 408
Query: 456 SWCSPFKTWQTVYNYD-IXXXXXXXXXXXXXXXXXALWSEQADGTVVDARLWPRTSAMAE 514
+ W+ Y + + LW E D T + RLWPR SA+ E
Sbjct: 409 ------QDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGE 462
Query: 515 ALWSGNRDETGKKRYAEATDRLNEWRHRMVNRGIGAEPIQPLWC 558
LWS + +A DRL R RMV RGI A+P+ +C
Sbjct: 463 RLWSSK----DVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 502
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 161/464 (34%), Positives = 237/464 (51%), Gaps = 71/464 (15%)
Query: 108 NESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIY------VWDEPL 161
+ESY+L + E A L A+ VWGA+RGLETFSQLV+ + + G + + D P
Sbjct: 105 DESYTLLV--KEPVAVLKANRVWGALRGLETFSQLVYQD----SYGTFTINESTIIDSPR 158
Query: 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGS 221
FSHRG+L+DTSR+Y V IL+T+ AM+ NK NV HWHI D SFP + P L+ KGS
Sbjct: 159 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 218
Query: 222 YGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVS-CANKFWWPAGT 280
Y ++YTP+DV+ +IEY G+RV+PE DTPGH+ SW ++++ C ++
Sbjct: 219 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSR------- 271
Query: 281 KWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILPACWKSDSLI 340
+++L S G +NP T+ + + ++ +FP+ F H GGDE+ CW+S+ I
Sbjct: 272 --QNKLDS---FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKI 326
Query: 341 QSFLSTG--GTLSEVLEKF-INFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTI 397
Q F+ GT + LE F I V I ++K +I W++V D++ K+ P TI
Sbjct: 327 QDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEV-FDDKAKLAPG------TI 379
Query: 398 FQSWKNGT--ESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGG 455
+ WK+ E ++ +G+ VI+S+ +YLD G
Sbjct: 380 VEVWKDSAYPEELSRVTASGFPVILSAP--WYLDLISYG--------------------- 416
Query: 456 SWCSPFKTWQTVYNYD-IXXXXXXXXXXXXXXXXXALWSEQADGTVVDARLWPRTSAMAE 514
+ W+ Y + + LW E D T + RLWPR SA+ E
Sbjct: 417 ------QDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGE 470
Query: 515 ALWSGNRDETGKKRYAEATDRLNEWRHRMVNRGIGAEPIQPLWC 558
LWS + +A DRL R RMV RGI A+P+ +C
Sbjct: 471 RLWSSK----DVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 510
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 165/500 (33%), Positives = 243/500 (48%), Gaps = 92/500 (18%)
Query: 90 QTLSISVDNISVPLTHGVN--------ESYSLTITSDENTAYLVASTVWGAMRGLETFSQ 141
TL +V +SV +T G N E+Y+LTI D+ L++ TVWGA+RGLETFSQ
Sbjct: 66 HTLEKNVLVVSV-VTPGCNQLPTLESVENYTLTINDDQ--CLLLSETVWGALRGLETFSQ 122
Query: 142 LVWGNPSCVAVGIY------VWDEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNV 195
LVW + A G + + D P F HRGLLLDTSR+Y + IL T+ M+ NKLNV
Sbjct: 123 LVWKS----AEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNV 178
Query: 196 FHWHITDSHSFPLLLPSDPNLAAKGSYGE-DYLYTPSDVKKIIEYGLDYGVRVVPEIDTP 254
FHWH+ D SFP + P L KGSY ++YT DVK++IEY G+RV+ E DTP
Sbjct: 179 FHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTP 238
Query: 255 GHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVA 314
GH+ SW P +++ P+GT G +NP T+ M V+
Sbjct: 239 GHTLSWGPGIPGLLTPCYSGSEPSGT-----------FGPVNPSLNNTYEFMSTFFLEVS 287
Query: 315 SIFPENFFHSGGDEILPACWKSDSLIQSFLSTGG---TLSEVLEKFINFVFPFIVALDKT 371
S+FP+ + H GGDE+ CWKS+ IQ F+ G ++ +I + + + K
Sbjct: 288 SVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKG 347
Query: 372 AIYWEDVILDNEIKVDPSYLYPEYTIFQSWK-----NGTESTKKIVQAGYRVIVSSSDYY 426
+ W++V DN++K+ P TI Q W+ N + + + +AG+R ++S+ +
Sbjct: 348 YVVWQEV-FDNKVKIQPD------TIIQVWREDIPVNYMKELELVTKAGFRALLSAP--W 398
Query: 427 YLDCGHGG------FLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDIXXXXXXXX 480
YL+ G ++ ++ PE + GG C
Sbjct: 399 YLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEAC---------------------- 436
Query: 481 XXXXXXXXXALWSEQADGTVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRLNEWR 540
+W E D T + RLWPR A+AE LWS A +RL+ +R
Sbjct: 437 ----------MWGEYVDNTNLVPRLWPRAGAVAERLWSNKL----TSDLTFAYERLSHFR 482
Query: 541 HRMVNRGIGAEPIQPLWCLQ 560
++ RG+ A+P+ +C Q
Sbjct: 483 CELLRRGVQAQPLNVGFCEQ 502
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 117/463 (25%), Positives = 189/463 (40%), Gaps = 76/463 (16%)
Query: 108 NESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGN--PSCVAVGIY-------VWD 158
NE Y L TS++ T L A+ G RG +T QL+ + V G+ + D
Sbjct: 121 NEGYDLITTSNQVT--LTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISD 178
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
+P + +RGL+LD +R+++ VD++ R I S K+N FH H++D + + + S P+L
Sbjct: 179 KPEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIE 238
Query: 219 KGS-----YGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANK 273
GS G YT K I+ Y + + V+PEID PGH+ + ++ E+
Sbjct: 239 IGSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELN----- 293
Query: 274 FWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILPAC 333
P G + R + G L P T+ + +V+ +A+I P + H GGDE
Sbjct: 294 ---PDGKRKAMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDE----- 345
Query: 334 WKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYP 393
+ T + + F V + K + W+ D S
Sbjct: 346 ------------SNATSAADYDYFFGRVTAIANSYGKKVVGWD--------PSDTSSGAT 385
Query: 394 EYTIFQSWKNGTESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAG 453
++ Q+W + G +VIVS ++ YLD + D P +Q
Sbjct: 386 SDSVLQNWTCSASTGTAAKAKGMKVIVSPAN-AYLDMKY--------YSDSPIGLQ---- 432
Query: 454 GGSWCSPFKTWQTVYNYDIXXXXXXXXXXXXXXXXXALWSEQ-ADGTVVDARLWPRTSAM 512
W F YN+D LW+E +D L+P+ +
Sbjct: 433 ---WRG-FVNTNRAYNWD---PTDCIKGANIYGVESTLWTETFVTQDHLDYMLYPKLLSN 485
Query: 513 AEALWSGNRDETGKKRYAEATDRLNEWRHRMVNRGIG--AEPI 553
AE W+ G + + + +RL E R+ N+GI A+PI
Sbjct: 486 AEVGWTAR----GDRNWDDFKERLIEHTPRLQNKGIKFFADPI 524
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 173/447 (38%), Gaps = 66/447 (14%)
Query: 154 IYVWDEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSD 213
+ V D+P F +RG LD +R++ D++LR I + +KLNV H H+TD + +
Sbjct: 130 VSVEDKPRFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWRXQINRY 189
Query: 214 PNLAAKGSYGEDY-----------------LYTPSDVKKIIEYGLDYGVRVVPEIDTPGH 256
P L G++ + YT D+++I+ + D + V+PEID PGH
Sbjct: 190 PKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGH 249
Query: 257 SGSWAGAHPEIVSCANKFWWPAG--TKWEDRLASEPGTGQ-LNPLHPKTFGVMINVLENV 313
S + A+PE+ + P T+W G + + + + NVL+ V
Sbjct: 250 SQAAIAAYPELGAGPADGSSPVEVWTRW--------GINETVLEVSETSLEFYRNVLDEV 301
Query: 314 ASIFPENFFHSGGDEILPACWKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALD---K 370
IFP + GGDE+ P S + L +V FV + L +
Sbjct: 302 VEIFPSPWISLGGDEV-PLTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLKHHGR 360
Query: 371 TAIYWEDVILDNEIKVDPSYLYPEYTIFQSWKNGTESTKKIVQAGYRVIVSSSDYYYLDC 430
W D I D + P+ + SW+ G E ++ GY V+ YLD
Sbjct: 361 ATSVW-DEIGDGGL--------PDGALVASWR-GYEGGIDALRKGYDVVXCPEHKLYLD- 409
Query: 431 GHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDIXXXXXXXXXXXXXXXXXA 490
H G+ D+P + T Q VY ++ A
Sbjct: 410 -HRQADGD----DEPVPVGFVT----------TLQAVYEFEPLPGVEGTDFPGRLLGAQA 454
Query: 491 -LWSEQADG-TVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRLNEWR-HRMVNRG 547
+WSE D V +PR SA++E WS + Y E RL R+ G
Sbjct: 455 NIWSEHLDSPRRVQFAAFPRLSAISEVFWS----NPAGRDYDEFLTRLTGAHLARLEAXG 510
Query: 548 IGAEPIQ-PLWCLQNPGMCNTVHAYNS 573
+ P+ P Q PG+ Y++
Sbjct: 511 VEYRPLSGPAPWQQRPGVEGWKRDYDA 537
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/426 (23%), Positives = 167/426 (39%), Gaps = 62/426 (14%)
Query: 108 NESYSLTITSDENTAYLVASTVWGAMRGLETFSQLV---------WGNPSCVAVGIYVWD 158
+E Y L S + A G G++T QL+ P VA G + D
Sbjct: 97 DEGYRLD--SGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGT-IED 153
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
P ++ R +LD SR+++ VD++ R I ++ K N H H++D + + + S P LA
Sbjct: 154 TPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLAT 213
Query: 219 KGSY-----GEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANK 273
G G YT ++ K+I+ Y + VVPEID PGH+ + ++ E+
Sbjct: 214 YGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVA 273
Query: 274 FWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILPAC 333
GTK G L T+ + +V+ +A++ P + H GGDE +
Sbjct: 274 PPLYTGTKV--------GFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAH-ST 324
Query: 334 WKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYP 393
K+D F++ F+ V P + KT + W + ++ L
Sbjct: 325 PKAD-----FVA-----------FMKRVQPIVAKYGKTVVGWHQLAGAEPVE---GALVQ 365
Query: 394 EYTIFQSWKNGTESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAG 453
+ + ++ + + G +I+S +D YLD + +
Sbjct: 366 YWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKY---------------TKDTPL 410
Query: 454 GGSWCSPFKTWQTVYNYDIXXXXXXXXXXXXXXXXXALWSEQ-ADGTVVDARLWPRTSAM 512
G SW + Q Y++D LW+E +D +D +PR +
Sbjct: 411 GLSWAG-YVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGV 469
Query: 513 AEALWS 518
AE WS
Sbjct: 470 AELGWS 475
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 49 IQAPMQTQLSSAVDRYLKLIKSEHHHHLVRPSINISSSP------PLQT----LSISVDN 98
+ PMQ ++ A D L+ + LV+P+ ++ S P+QT + +
Sbjct: 191 VPTPMQVKVH-AQDADLRKGVALDLSTLVKPAADVVSQRFALLGVPVQTNGYPIKTDIQP 249
Query: 99 ISVPLTHGVNESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIYVWD 158
V+ +Y L I E A ++ G GL++ LV + S + D
Sbjct: 250 GKFKGAMAVSGAYELKIGKKE--AQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASD 307
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
P F +RG+ LD +RN+++ D +LR + M+A KLN FH+H++D + + +P P L
Sbjct: 308 APRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTE 367
Query: 219 KG---------------SYGE-----DYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHS 257
G YG+ ++ D II+Y + V+PEID P H+
Sbjct: 368 VGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 49 IQAPMQTQLSSAVDRYLKLIKSEHHHHLVRPSINISSSP------PLQT----LSISVDN 98
+ PMQ ++ A D L+ + LV+P+ ++ S P+QT + +
Sbjct: 191 VPTPMQVKVH-AQDADLRKGVALDLSTLVKPAADVVSQRFALLGVPVQTNGYPIKTDIQP 249
Query: 99 ISVPLTHGVNESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIYVWD 158
V+ +Y L I E A ++ G GL++ LV + S + D
Sbjct: 250 GKFKGAMAVSGAYELKIGKKE--AQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASD 307
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
P F +RG+ LD +RN+++ D +LR + M+A KLN FH+H++D + + +P P L
Sbjct: 308 APRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTE 367
Query: 219 KG---------------SYGE-----DYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHS 257
G YG+ ++ D II+Y + V+PEID P H+
Sbjct: 368 VGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 49 IQAPMQTQLSSAVDRYLKLIKSEHHHHLVRPSINISSSP------PLQT----LSISVDN 98
+ PMQ ++ A D L+ + LV+P+ ++ S P+QT + +
Sbjct: 191 VPTPMQVKVH-AQDADLRKGVALDLSTLVKPAADVVSQRFALLGVPVQTNGYPIKTDIQP 249
Query: 99 ISVPLTHGVNESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIYVWD 158
V+ +Y L I E A ++ G GL++ LV + S + D
Sbjct: 250 GKFKGAMAVSGAYELKIGKKE--AQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASD 307
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
P F +RG+ LD +RN+++ D +LR + M+A KLN FH+H++D + + +P P L
Sbjct: 308 APRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTE 367
Query: 219 KG---------------SYGE-----DYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHS 257
G YG+ ++ D II+Y + V+PEID P H+
Sbjct: 368 VGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 98/426 (23%), Positives = 167/426 (39%), Gaps = 62/426 (14%)
Query: 108 NESYSLTITSDENTAYLVASTVWGAMRGLETFSQLV---------WGNPSCVAVGIYVWD 158
+E Y L S + A G G++T QL+ P VA G + D
Sbjct: 97 DEGYRLD--SGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGT-IED 153
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
P ++ R +LD SR+++ VD++ R I ++ K N H H++D + + + S P LA
Sbjct: 154 TPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLAT 213
Query: 219 KGSY-----GEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANK 273
G G YT ++ K+I+ Y + VVPEID PGH+ + ++ E+
Sbjct: 214 YGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVA 273
Query: 274 FWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILPAC 333
GTK G L T+ + +V+ +A++ P + H GG+E +
Sbjct: 274 PPLYTGTKV--------GFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGNEAH-ST 324
Query: 334 WKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYP 393
K+D F++ F+ V P + KT + W + ++ L
Sbjct: 325 PKAD-----FVA-----------FMKRVQPIVAKYGKTVVGWHQLAGAEPVE---GALVQ 365
Query: 394 EYTIFQSWKNGTESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAG 453
+ + ++ + + G +I+S +D YLD + +
Sbjct: 366 YWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKY---------------TKDTPL 410
Query: 454 GGSWCSPFKTWQTVYNYDIXXXXXXXXXXXXXXXXXALWSEQ-ADGTVVDARLWPRTSAM 512
G SW + Q Y++D LW+E +D +D +PR +
Sbjct: 411 GLSWAG-YVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGV 469
Query: 513 AEALWS 518
AE WS
Sbjct: 470 AELGWS 475
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/426 (23%), Positives = 166/426 (38%), Gaps = 62/426 (14%)
Query: 108 NESYSLTITSDENTAYLVASTVWGAMRGLETFSQLV---------WGNPSCVAVGIYVWD 158
+E Y L S + A G G++T QL+ P VA G + D
Sbjct: 97 DEGYRLD--SGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGT-IED 153
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
P ++ R +LD SR+++ VD++ R I ++ K N H H++D + + + S P LA
Sbjct: 154 TPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLAT 213
Query: 219 KGSY-----GEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANK 273
G G YT ++ K+I+ Y + VVPEID PGH+ + ++ E+
Sbjct: 214 YGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVA 273
Query: 274 FWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILPAC 333
GTK G L T+ + +V+ +A++ P + H GG E +
Sbjct: 274 PPLYTGTKV--------GFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGAEAH-ST 324
Query: 334 WKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYP 393
K+D F++ F+ V P + KT + W + ++ L
Sbjct: 325 PKAD-----FVA-----------FMKRVQPIVAKYGKTVVGWHQLAGAEPVE---GALVQ 365
Query: 394 EYTIFQSWKNGTESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAG 453
+ + ++ + + G +I+S +D YLD + +
Sbjct: 366 YWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKY---------------TKDTPL 410
Query: 454 GGSWCSPFKTWQTVYNYDIXXXXXXXXXXXXXXXXXALWSEQ-ADGTVVDARLWPRTSAM 512
G SW + Q Y++D LW+E +D +D +PR +
Sbjct: 411 GLSWAG-YVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGV 469
Query: 513 AEALWS 518
AE WS
Sbjct: 470 AELGWS 475
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 27/222 (12%)
Query: 148 SCVAVGIYVWDEPLFSHR-GLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSF 206
+C G ++ + + + GL+LD +R++Y + I I +S + N H H +D ++
Sbjct: 1 NCCVKGNSIYPQKTSTKQTGLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENY 60
Query: 207 PLLLPSDPNLAAKGSYGEDYLY----------TPSDVKKIIEYGLDYGVRVVPEIDTPGH 256
+ A G+D +Y + + I Y G+ ++PE+D+P H
Sbjct: 61 AIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNH 120
Query: 257 SGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASI 316
+ I K G K+ L S +++ + + M +++ V I
Sbjct: 121 MTA-------IFKLVQK---DRGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDI 170
Query: 317 FPE--NFFHSGGDEILPACWKSDSLIQSFLSTGGTLSEVLEK 356
F + FH GGDE + + F++ LS LEK
Sbjct: 171 FGDTSQHFHIGGDEFGYSVESN----HEFITYANKLSYFLEK 208
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
E L ++ + +D R Y+ ++ + R + A++L H+ + L D + A
Sbjct: 22 EKLAKNKVISIDAGRKYFTLNQLKRIVD--KASELGYSDVHLLLGNDGLRFLLDDMTITA 79
Query: 219 KG-SYGEDYL-------------------YTPSDVKKIIEYGLDYGVRVVPEIDTPGH 256
G +Y D + T ++V ++IEY + ++P I++PGH
Sbjct: 80 NGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGH 137
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
E L ++ + +D R Y+ ++ + R + A++L H+ + L D + A
Sbjct: 5 EKLAKNKVISIDAGRKYFTLNQLKRIVD--KASELGYSDVHLLLGNDGLRFLLDDMTITA 62
Query: 219 KG-SYGEDYL-------------------YTPSDVKKIIEYGLDYGVRVVPEIDTPGH 256
G +Y D + T ++V ++IEY + ++P I++PGH
Sbjct: 63 NGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGH 120
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
Query: 159 EPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA 218
E L ++ + +D R Y+ ++ + R + A++L H+ + L D + A
Sbjct: 5 EKLAKNKVISIDAGRKYFTLNQLKRIVD--KASELGYSDVHLLLGNDGLRFLLDDMTITA 62
Query: 219 KG-SYGEDYL-------------------YTPSDVKKIIEYGLDYGVRVVPEIDTPGH 256
G +Y D + T ++V ++IEY + ++P I++PGH
Sbjct: 63 NGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGH 120
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 229 TPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEI 267
T S + +I Y D G+ ++P +++PGH + A E+
Sbjct: 90 TESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKEL 128
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 229 TPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEI 267
T S + +I Y D G+ ++P +++PGH + A E+
Sbjct: 90 TESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKEL 128
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 229 TPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEI 267
T S + +I Y D G+ ++P +++PGH + A E+
Sbjct: 110 TESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKEL 148
>pdb|3RPM|A Chain A, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
pdb|3RPM|B Chain B, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
Length = 467
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 229 TPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEI 267
T S +I Y D G+ ++P +++PGH + A E+
Sbjct: 95 TESQXTDLINYAKDKGIGLIPTVNSPGHXDAILNAXKEL 133
>pdb|3QNQ|A Chain A, Crystal Structure Of The Transporter Chbc, The Iic
Component From The N,n'-diacetylchitobiose-specific
Phosphotransferase System
pdb|3QNQ|B Chain B, Crystal Structure Of The Transporter Chbc, The Iic
Component From The N,n'-diacetylchitobiose-specific
Phosphotransferase System
pdb|3QNQ|C Chain C, Crystal Structure Of The Transporter Chbc, The Iic
Component From The N,n'-diacetylchitobiose-specific
Phosphotransferase System
pdb|3QNQ|D Chain D, Crystal Structure Of The Transporter Chbc, The Iic
Component From The N,n'-diacetylchitobiose-specific
Phosphotransferase System
Length = 442
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 15/121 (12%)
Query: 261 AGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFG-------------VMI 307
+GA +V F K RL+ PG +N + TFG +++
Sbjct: 298 SGATLALVVGMLLFARSQQLKSLGRLSIAPGIFNINEM--VTFGMPIVMNPLLLIPFIVV 355
Query: 308 NVLENVASIFPENFFHSGGDEILPACWKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVA 367
V+ + S F + W + L +L +GG +S V+ + +NF F++
Sbjct: 356 PVVLTIVSYFAMEWGLVARPSGAAVTWTTPILFSGYLGSGGKISGVILQLVNFALAFVIY 415
Query: 368 L 368
L
Sbjct: 416 L 416
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,239,092
Number of Sequences: 62578
Number of extensions: 864929
Number of successful extensions: 2726
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2638
Number of HSP's gapped (non-prelim): 59
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)