Query 007610
Match_columns 596
No_of_seqs 256 out of 1716
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 12:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499 Beta-N-acetylhexosamin 100.0 1E-111 3E-116 880.1 43.0 489 25-566 35-542 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 2.5E-89 5.4E-94 725.0 34.4 345 162-547 1-348 (348)
3 cd06569 GH20_Sm-chitobiase-lik 100.0 3.7E-87 8E-92 725.9 34.9 350 158-522 1-420 (445)
4 cd06563 GH20_chitobiase-like T 100.0 3.9E-86 8.6E-91 703.5 33.1 337 162-536 1-357 (357)
5 cd06570 GH20_chitobiase-like_1 100.0 2.1E-84 4.5E-89 675.0 31.4 309 162-536 1-311 (311)
6 cd06568 GH20_SpHex_like A subg 100.0 7.9E-83 1.7E-87 669.4 31.3 321 162-536 1-329 (329)
7 COG3525 Chb N-acetyl-beta-hexo 100.0 2E-77 4.4E-82 643.9 31.6 414 107-553 204-645 (732)
8 PF00728 Glyco_hydro_20: Glyco 100.0 3.4E-78 7.4E-83 641.7 18.3 335 162-519 1-350 (351)
9 cd02742 GH20_hexosaminidase Be 100.0 1E-74 2.3E-79 603.2 28.5 294 164-518 1-303 (303)
10 cd06564 GH20_DspB_LnbB-like Gl 100.0 5E-72 1.1E-76 588.9 26.9 299 163-519 1-326 (326)
11 cd06565 GH20_GcnA-like Glycosy 100.0 1.9E-50 4E-55 420.1 22.2 291 164-518 1-301 (301)
12 PF02838 Glyco_hydro_20b: Glyc 99.7 5E-16 1.1E-20 140.9 12.4 122 24-159 2-124 (124)
13 PF14845 Glycohydro_20b2: beta 99.6 2.1E-14 4.6E-19 131.3 11.1 115 26-142 1-128 (128)
14 PF02638 DUF187: Glycosyl hydr 97.4 0.0085 1.8E-07 63.2 17.7 195 163-369 1-220 (311)
15 PF13200 DUF4015: Putative gly 96.9 0.024 5.1E-07 59.7 15.4 172 178-372 12-190 (316)
16 COG1649 Uncharacterized protei 96.7 0.087 1.9E-06 57.3 17.7 151 161-320 44-201 (418)
17 PF14871 GHL6: Hypothetical gl 95.7 0.12 2.6E-06 47.6 10.8 123 182-319 3-125 (132)
18 PF07555 NAGidase: beta-N-acet 95.5 0.12 2.6E-06 54.4 11.2 145 165-368 1-148 (306)
19 PF03648 Glyco_hydro_67N: Glyc 94.8 0.21 4.5E-06 45.2 9.3 87 48-138 23-121 (122)
20 PF10566 Glyco_hydro_97: Glyco 94.5 0.13 2.9E-06 53.0 8.1 115 173-316 26-149 (273)
21 PRK12313 glycogen branching en 92.9 0.92 2E-05 52.6 12.3 127 175-318 166-302 (633)
22 smart00642 Aamy Alpha-amylase 92.7 0.59 1.3E-05 44.7 8.7 75 177-259 17-97 (166)
23 PF00150 Cellulase: Cellulase 92.6 0.6 1.3E-05 47.4 9.1 158 162-371 8-165 (281)
24 TIGR02402 trehalose_TreZ malto 92.1 1.3 2.9E-05 50.4 11.9 119 178-317 110-236 (542)
25 PLN02960 alpha-amylase 92.0 1.3 2.7E-05 52.6 11.7 126 176-317 413-548 (897)
26 TIGR01515 branching_enzym alph 91.9 1.4 2.9E-05 51.1 11.9 121 181-318 159-288 (613)
27 PRK14705 glycogen branching en 91.4 1.5 3.3E-05 54.1 12.0 121 181-318 768-897 (1224)
28 PLN02447 1,4-alpha-glucan-bran 91.2 8.5 0.00018 45.4 17.3 178 177-377 248-445 (758)
29 PRK14706 glycogen branching en 90.6 2.4 5.1E-05 49.3 12.1 125 175-317 163-298 (639)
30 PRK12568 glycogen branching en 88.9 3.9 8.4E-05 48.0 12.1 126 175-318 265-401 (730)
31 TIGR02100 glgX_debranch glycog 88.5 3.4 7.3E-05 48.4 11.4 126 184-318 189-334 (688)
32 PF00128 Alpha-amylase: Alpha 88.3 0.57 1.2E-05 48.0 4.5 74 178-259 3-79 (316)
33 TIGR02403 trehalose_treC alpha 88.2 1.5 3.4E-05 49.8 8.2 75 177-259 25-102 (543)
34 PRK10933 trehalose-6-phosphate 87.8 6.1 0.00013 45.1 12.8 75 177-259 31-108 (551)
35 PRK05402 glycogen branching en 87.7 1.6 3.4E-05 51.6 8.1 126 175-317 261-396 (726)
36 PF02449 Glyco_hydro_42: Beta- 87.7 1.3 2.9E-05 47.8 7.0 124 176-325 7-135 (374)
37 PRK03705 glycogen debranching 86.3 3.8 8.3E-05 47.7 10.1 126 184-318 184-329 (658)
38 COG0296 GlgB 1,4-alpha-glucan 86.0 4.2 9.1E-05 46.8 10.0 133 167-317 150-295 (628)
39 TIGR02102 pullulan_Gpos pullul 85.3 10 0.00022 46.7 13.4 129 178-318 479-635 (1111)
40 PLN02784 alpha-amylase 83.7 14 0.00029 44.2 12.9 87 165-260 507-596 (894)
41 PF02065 Melibiase: Melibiase; 82.7 5.4 0.00012 43.6 8.8 128 176-322 55-187 (394)
42 PRK10785 maltodextrin glucosid 82.7 4.2 9.1E-05 46.9 8.4 79 173-259 171-253 (598)
43 TIGR02104 pulA_typeI pullulana 82.5 7.9 0.00017 44.7 10.5 128 179-317 164-311 (605)
44 PLN02361 alpha-amylase 82.2 19 0.00041 39.5 12.7 71 179-258 29-102 (401)
45 PRK14511 maltooligosyl trehalo 81.1 5.4 0.00012 47.7 8.5 76 176-259 17-96 (879)
46 PRK14510 putative bifunctional 80.3 12 0.00026 46.9 11.5 125 183-315 191-333 (1221)
47 TIGR02456 treS_nterm trehalose 80.2 5.2 0.00011 45.5 7.9 75 177-259 26-103 (539)
48 TIGR02401 trehalose_TreY malto 79.0 6.9 0.00015 46.5 8.5 77 175-259 12-92 (825)
49 PRK09441 cytoplasmic alpha-amy 78.7 7.9 0.00017 43.3 8.6 80 178-259 21-108 (479)
50 COG0436 Aspartate/tyrosine/aro 76.4 8 0.00017 42.2 7.7 106 110-249 81-201 (393)
51 KOG0470 1,4-alpha-glucan branc 76.2 6.1 0.00013 45.8 6.7 123 180-315 256-392 (757)
52 cd06593 GH31_xylosidase_YicI Y 75.9 24 0.00051 37.0 10.8 138 160-315 7-147 (308)
53 PLN02877 alpha-amylase/limit d 75.5 38 0.00083 41.2 13.4 29 230-259 465-493 (970)
54 PLN00145 tyrosine/nicotianamin 73.8 7.1 0.00015 43.0 6.5 24 226-249 205-228 (430)
55 TIGR02103 pullul_strch alpha-1 73.0 48 0.001 40.1 13.4 82 231-315 404-486 (898)
56 PLN00196 alpha-amylase; Provis 71.1 15 0.00033 40.6 8.2 73 178-259 43-119 (428)
57 TIGR03234 OH-pyruv-isom hydrox 70.2 8.4 0.00018 38.9 5.7 100 136-251 41-143 (254)
58 cd06594 GH31_glucosidase_YihQ 68.9 22 0.00048 37.6 8.7 143 160-313 7-151 (317)
59 PF01055 Glyco_hydro_31: Glyco 65.8 19 0.00041 39.6 7.8 142 160-319 26-171 (441)
60 KOG0259 Tyrosine aminotransfer 65.3 11 0.00024 40.6 5.4 33 225-258 213-245 (447)
61 PLN03244 alpha-amylase; Provis 63.8 17 0.00036 43.0 6.9 82 227-317 437-523 (872)
62 PLN02187 rooty/superroot1 62.7 20 0.00044 39.8 7.3 24 226-249 219-242 (462)
63 cd06592 GH31_glucosidase_KIAA1 62.6 43 0.00093 35.1 9.3 123 174-314 25-151 (303)
64 PRK14507 putative bifunctional 61.1 25 0.00054 45.2 8.2 76 175-258 754-833 (1693)
65 cd06591 GH31_xylosidase_XylS X 60.0 48 0.001 35.0 9.2 134 160-312 7-143 (319)
66 cd00019 AP2Ec AP endonuclease 59.5 15 0.00033 37.6 5.2 62 176-251 82-143 (279)
67 PF13199 Glyco_hydro_66: Glyco 59.1 18 0.00038 41.4 6.0 197 157-378 97-309 (559)
68 TIGR02455 TreS_stutzeri trehal 58.5 31 0.00066 40.0 7.6 71 182-259 77-157 (688)
69 PLN02607 1-aminocyclopropane-1 58.2 58 0.0013 36.1 9.8 63 170-249 175-238 (447)
70 COG1874 LacA Beta-galactosidas 55.8 2.1E+02 0.0044 33.7 13.8 133 176-334 27-167 (673)
71 TIGR01531 glyc_debranch glycog 54.3 39 0.00084 42.5 8.1 82 174-267 126-223 (1464)
72 PLN00143 tyrosine/nicotianamin 54.2 31 0.00066 37.6 6.8 24 226-249 185-208 (409)
73 KOG0258 Alanine aminotransfera 53.7 84 0.0018 34.3 9.4 104 121-250 138-254 (475)
74 PRK06552 keto-hydroxyglutarate 53.1 68 0.0015 32.0 8.4 82 177-262 23-127 (213)
75 COG3661 AguA Alpha-glucuronida 53.0 1.8E+02 0.0039 32.2 11.8 164 107-319 92-279 (684)
76 PLN02656 tyrosine transaminase 52.8 38 0.00083 36.8 7.2 23 226-248 184-206 (409)
77 cd00452 KDPG_aldolase KDPG and 52.6 16 0.00036 35.4 3.9 85 177-262 14-115 (190)
78 PF01301 Glyco_hydro_35: Glyco 52.0 56 0.0012 34.6 8.1 77 156-251 4-83 (319)
79 PTZ00433 tyrosine aminotransfe 50.9 40 0.00087 36.7 7.0 24 226-249 192-215 (412)
80 PRK05942 aspartate aminotransf 50.5 47 0.001 35.8 7.4 24 226-249 185-208 (394)
81 cd06598 GH31_transferase_CtsZ 49.8 92 0.002 32.8 9.3 139 160-315 7-152 (317)
82 PTZ00377 alanine aminotransfer 48.9 46 0.001 37.1 7.2 24 226-249 233-256 (481)
83 PRK09505 malS alpha-amylase; R 48.8 61 0.0013 38.1 8.3 80 178-258 229-318 (683)
84 PRK10658 putative alpha-glucos 48.7 1.5E+02 0.0033 34.8 11.6 138 160-316 264-407 (665)
85 COG0134 TrpC Indole-3-glycerol 48.3 26 0.00056 36.0 4.6 74 227-325 139-212 (254)
86 PRK07681 aspartate aminotransf 47.8 58 0.0013 35.1 7.6 23 226-248 181-203 (399)
87 PRK06348 aspartate aminotransf 47.1 51 0.0011 35.4 7.0 23 226-248 177-199 (384)
88 PRK06290 aspartate aminotransf 45.6 63 0.0014 35.3 7.5 23 226-248 194-216 (410)
89 PRK10076 pyruvate formate lyas 45.0 71 0.0015 31.8 7.1 68 177-248 143-210 (213)
90 PRK09265 aminotransferase AlaT 44.8 98 0.0021 33.4 8.8 24 226-249 183-206 (404)
91 PRK07590 L,L-diaminopimelate a 44.7 1.1E+02 0.0025 33.0 9.3 24 226-249 191-214 (409)
92 PF01261 AP_endonuc_2: Xylose 44.5 28 0.00061 33.2 4.1 63 178-251 70-132 (213)
93 PRK13957 indole-3-glycerol-pho 44.3 27 0.00059 35.7 4.0 41 227-267 134-174 (247)
94 PRK09257 aromatic amino acid a 44.1 96 0.0021 33.4 8.6 24 226-249 187-210 (396)
95 PF01212 Beta_elim_lyase: Beta 44.1 72 0.0016 33.3 7.3 59 174-248 104-162 (290)
96 PRK08636 aspartate aminotransf 43.8 1.1E+02 0.0023 33.1 9.0 23 226-248 190-212 (403)
97 PRK05839 hypothetical protein; 43.8 1.2E+02 0.0026 32.4 9.3 24 226-249 170-193 (374)
98 cd06565 GH20_GcnA-like Glycosy 43.7 35 0.00075 35.8 4.9 63 131-197 11-78 (301)
99 PLN02376 1-aminocyclopropane-1 43.5 94 0.002 35.0 8.6 24 226-249 214-237 (496)
100 PRK07324 transaminase; Validat 43.2 84 0.0018 33.7 7.9 25 226-250 168-192 (373)
101 COG1523 PulA Type II secretory 43.2 1.2E+02 0.0026 35.7 9.5 81 230-316 264-350 (697)
102 KOG0462 Elongation factor-type 42.9 17 0.00037 41.0 2.5 44 229-272 92-151 (650)
103 PF13380 CoA_binding_2: CoA bi 42.2 52 0.0011 29.3 5.1 99 121-248 2-106 (116)
104 PLN02231 alanine transaminase 41.6 1.4E+02 0.0031 34.0 9.7 24 226-249 286-309 (534)
105 PRK07337 aminotransferase; Val 41.3 83 0.0018 33.7 7.6 25 226-250 178-202 (388)
106 PRK13355 bifunctional HTH-doma 41.0 74 0.0016 35.9 7.4 24 226-249 296-319 (517)
107 PRK09276 LL-diaminopimelate am 40.6 1.2E+02 0.0027 32.3 8.7 23 226-248 181-203 (385)
108 TIGR03586 PseI pseudaminic aci 40.3 91 0.002 33.3 7.4 78 177-258 15-104 (327)
109 PRK02308 uvsE putative UV dama 39.9 4.3E+02 0.0092 27.8 12.3 23 226-248 86-108 (303)
110 PRK09082 methionine aminotrans 39.7 1.2E+02 0.0025 32.6 8.4 24 226-249 178-201 (386)
111 COG2100 Predicted Fe-S oxidore 39.7 1.2E+02 0.0026 32.3 7.9 99 121-249 162-260 (414)
112 PRK10626 hypothetical protein; 39.6 1.1E+02 0.0025 31.0 7.5 47 25-71 31-83 (239)
113 PRK00278 trpC indole-3-glycero 39.2 1E+02 0.0022 31.7 7.4 47 184-255 125-171 (260)
114 PRK05957 aspartate aminotransf 39.0 1.1E+02 0.0024 32.8 8.2 23 226-248 175-197 (389)
115 PRK08960 hypothetical protein; 39.0 61 0.0013 34.8 6.1 24 226-249 180-203 (387)
116 PF07745 Glyco_hydro_53: Glyco 38.9 4.8E+02 0.01 27.9 12.6 139 182-368 27-166 (332)
117 PF14701 hDGE_amylase: glucano 38.2 1.2E+02 0.0027 33.4 8.1 86 177-268 20-116 (423)
118 PRK09275 aspartate aminotransf 37.6 1.1E+02 0.0025 34.7 8.1 24 226-249 256-281 (527)
119 PRK05301 pyrroloquinoline quin 37.1 1E+02 0.0022 33.2 7.4 59 173-257 43-101 (378)
120 PRK08068 transaminase; Reviewe 37.0 84 0.0018 33.7 6.8 23 226-248 182-204 (389)
121 PRK11627 hypothetical protein; 36.1 3E+02 0.0064 27.1 9.7 9 90-98 101-109 (192)
122 TIGR03540 DapC_direct LL-diami 35.9 1.4E+02 0.0031 31.8 8.3 23 226-248 179-201 (383)
123 PF05913 DUF871: Bacterial pro 35.8 82 0.0018 34.0 6.3 55 177-252 12-68 (357)
124 COG0481 LepA Membrane GTPase L 35.7 22 0.00047 39.6 1.9 44 230-273 42-103 (603)
125 PF07488 Glyco_hydro_67M: Glyc 35.4 5.2E+02 0.011 27.4 11.6 120 153-319 12-150 (328)
126 TIGR01264 tyr_amTase_E tyrosin 35.4 1E+02 0.0022 33.3 7.0 24 226-249 183-206 (401)
127 PRK08363 alanine aminotransfer 34.4 1.1E+02 0.0023 33.1 7.0 24 226-249 181-204 (398)
128 COG0366 AmyA Glycosidases [Car 34.3 1.1E+02 0.0024 33.7 7.3 74 178-259 28-104 (505)
129 TIGR02109 PQQ_syn_pqqE coenzym 34.0 1E+02 0.0022 32.8 6.8 59 173-257 34-92 (358)
130 TIGR01866 cas_Csn2 CRISPR-asso 33.9 72 0.0016 32.0 5.1 64 162-248 132-195 (216)
131 KOG0256 1-aminocyclopropane-1- 33.7 1.8E+02 0.0039 32.0 8.3 66 167-249 198-264 (471)
132 PRK09856 fructoselysine 3-epim 33.4 1.2E+02 0.0026 30.7 6.9 63 177-252 88-150 (275)
133 PF01565 FAD_binding_4: FAD bi 32.4 49 0.0011 29.9 3.4 28 229-258 9-36 (139)
134 PRK05718 keto-hydroxyglutarate 32.3 65 0.0014 32.1 4.5 82 176-261 24-125 (212)
135 COG2100 Predicted Fe-S oxidore 31.9 1.1E+02 0.0024 32.6 6.2 97 120-244 188-284 (414)
136 COG1313 PflX Uncharacterized F 31.2 88 0.0019 32.8 5.2 62 178-249 269-333 (335)
137 PRK06015 keto-hydroxyglutarate 31.1 81 0.0017 31.2 4.9 82 177-262 14-115 (201)
138 PRK01060 endonuclease IV; Prov 31.0 1.7E+02 0.0037 29.8 7.6 59 166-247 5-63 (281)
139 TIGR01182 eda Entner-Doudoroff 30.9 67 0.0014 31.9 4.3 82 177-262 18-119 (204)
140 TIGR03569 NeuB_NnaB N-acetylne 30.5 1.2E+02 0.0026 32.4 6.4 77 177-257 14-102 (329)
141 COG1168 MalY Bifunctional PLP- 30.5 50 0.0011 35.8 3.5 26 226-251 173-199 (388)
142 COG0113 HemB Delta-aminolevuli 30.4 3.9E+02 0.0085 28.3 9.8 110 178-309 16-155 (330)
143 cd06602 GH31_MGAM_SI_GAA This 30.3 6.9E+02 0.015 26.6 13.4 129 174-316 19-153 (339)
144 PF12971 NAGLU_N: Alpha-N-acet 30.2 1.2E+02 0.0027 25.5 5.3 44 91-140 19-62 (86)
145 PRK09148 aminotransferase; Val 30.0 72 0.0016 34.6 4.9 23 226-248 180-202 (405)
146 KOG3698 Hyaluronoglucosaminida 29.8 80 0.0017 35.9 5.0 69 173-256 27-98 (891)
147 PF13204 DUF4038: Protein of u 29.8 1.4E+02 0.003 31.1 6.7 71 177-248 28-105 (289)
148 PTZ00372 endonuclease 4-like p 29.6 1.1E+02 0.0023 33.8 6.0 85 156-250 297-390 (413)
149 COG3977 Alanine-alpha-ketoisov 28.2 31 0.00066 36.3 1.4 125 108-250 88-218 (417)
150 TIGR00542 hxl6Piso_put hexulos 28.0 1.1E+02 0.0024 31.2 5.6 61 178-251 93-153 (279)
151 PRK14582 pgaB outer membrane N 27.9 1.1E+03 0.023 28.0 18.0 130 178-327 333-467 (671)
152 PRK09997 hydroxypyruvate isome 27.6 1.3E+02 0.0027 30.4 5.8 103 135-251 41-144 (258)
153 COG0084 TatD Mg-dependent DNas 27.3 6E+02 0.013 26.1 10.7 63 353-420 109-176 (256)
154 PRK08056 threonine-phosphate d 27.2 4.2E+02 0.009 27.9 10.0 24 226-249 157-180 (356)
155 TIGR01265 tyr_nico_aTase tyros 27.0 1.5E+02 0.0032 32.1 6.6 24 226-249 184-207 (403)
156 cd06604 GH31_glucosidase_II_Ma 26.9 2.9E+02 0.0063 29.3 8.7 123 174-315 19-147 (339)
157 PF02679 ComA: (2R)-phospho-3- 26.8 1.4E+02 0.003 30.5 5.8 26 227-252 109-134 (244)
158 cd06600 GH31_MGAM-like This fa 26.5 5.9E+02 0.013 26.7 10.9 121 174-314 19-146 (317)
159 PRK09147 succinyldiaminopimela 25.8 99 0.0022 33.3 5.0 23 226-248 181-203 (396)
160 TIGR03537 DapC succinyldiamino 25.3 84 0.0018 33.2 4.2 24 226-249 151-174 (350)
161 PLN00175 aminotransferase fami 25.2 2.2E+02 0.0047 31.0 7.5 24 226-249 202-225 (413)
162 cd06603 GH31_GANC_GANAB_alpha 25.2 3.3E+02 0.0071 28.9 8.7 125 174-315 19-147 (339)
163 PRK14508 4-alpha-glucanotransf 25.2 1E+02 0.0023 34.8 5.1 104 227-338 194-324 (497)
164 PRK09427 bifunctional indole-3 25.0 79 0.0017 35.3 4.0 41 227-267 142-182 (454)
165 PF09183 DUF1947: Domain of un 24.9 49 0.0011 26.7 1.7 23 172-194 1-24 (65)
166 TIGR03849 arch_ComA phosphosul 24.9 2.2E+02 0.0048 29.0 6.8 24 228-251 97-120 (237)
167 PLN02635 disproportionating en 24.6 96 0.0021 35.4 4.7 104 227-338 220-350 (538)
168 PRK07550 hypothetical protein; 24.6 1.6E+02 0.0035 31.5 6.3 24 226-249 178-201 (386)
169 PF08139 LPAM_1: Prokaryotic m 24.4 57 0.0012 21.3 1.6 14 1-14 7-20 (25)
170 PRK14335 (dimethylallyl)adenos 24.3 1.4E+02 0.0029 33.3 5.8 56 182-250 255-314 (455)
171 PRK10426 alpha-glucosidase; Pr 24.3 5.7E+02 0.012 29.9 11.0 140 160-312 205-347 (635)
172 cd07201 cPLA2_Grp-IVB-IVD-IVE- 24.3 95 0.0021 35.3 4.4 94 154-253 289-432 (541)
173 TIGR03801 asp_4_decarbox aspar 24.2 3.3E+02 0.007 31.1 8.8 24 226-249 255-280 (521)
174 COG1217 TypA Predicted membran 24.1 42 0.00091 37.4 1.6 22 238-259 47-81 (603)
175 PRK13802 bifunctional indole-3 23.8 86 0.0019 36.9 4.2 42 227-268 143-184 (695)
176 PRK08361 aspartate aminotransf 23.7 2E+02 0.0043 30.9 6.8 24 226-249 181-204 (391)
177 PRK07114 keto-hydroxyglutarate 23.7 1.6E+02 0.0034 29.7 5.5 82 177-262 25-130 (222)
178 PRK15481 transcriptional regul 23.5 3E+02 0.0066 29.9 8.3 23 226-248 227-250 (431)
179 cd06589 GH31 The enzymes of gl 23.4 1.7E+02 0.0036 29.9 5.8 81 160-252 7-87 (265)
180 PRK14456 ribosomal RNA large s 23.4 3.9E+02 0.0084 29.0 8.8 118 108-255 201-320 (368)
181 PF01244 Peptidase_M19: Membra 23.3 2.1E+02 0.0046 30.3 6.7 52 301-352 246-305 (320)
182 PRK11145 pflA pyruvate formate 23.1 1.7E+02 0.0037 29.3 5.7 68 178-248 178-245 (246)
183 PF14542 Acetyltransf_CG: GCN5 23.0 77 0.0017 26.2 2.7 37 228-267 39-75 (78)
184 PLN03059 beta-galactosidase; P 22.9 7.4E+02 0.016 30.0 11.5 78 155-250 38-117 (840)
185 PF05089 NAGLU: Alpha-N-acetyl 22.3 1E+02 0.0022 32.9 4.1 72 234-318 98-171 (333)
186 PRK13209 L-xylulose 5-phosphat 22.2 1.5E+02 0.0032 30.2 5.2 60 178-251 98-158 (283)
187 PRK07366 succinyldiaminopimela 22.2 1.3E+02 0.0028 32.2 5.0 23 226-248 180-202 (388)
188 PLN02450 1-aminocyclopropane-1 22.1 75 0.0016 35.4 3.2 24 226-249 206-229 (468)
189 cd01299 Met_dep_hydrolase_A Me 21.7 4.2E+02 0.0091 27.6 8.7 63 177-251 118-180 (342)
190 COG1167 ARO8 Transcriptional r 21.4 4.8E+02 0.01 29.0 9.4 29 226-255 242-270 (459)
191 PRK13384 delta-aminolevulinic 21.3 5.4E+02 0.012 27.4 8.9 104 198-330 37-165 (322)
192 COG4314 NosL Predicted lipopro 21.3 86 0.0019 29.7 2.8 36 1-37 1-36 (176)
193 TIGR03538 DapC_gpp succinyldia 21.0 1.2E+02 0.0026 32.5 4.5 24 226-249 180-203 (393)
194 PRK05764 aspartate aminotransf 21.0 1.5E+02 0.0032 31.7 5.2 24 226-249 179-202 (393)
195 PF03102 NeuB: NeuB family; I 21.0 87 0.0019 31.9 3.1 22 227-248 52-73 (241)
196 KOG0464 Elongation factor G [T 21.0 77 0.0017 34.7 2.8 29 231-259 74-115 (753)
197 TIGR03849 arch_ComA phosphosul 20.8 92 0.002 31.7 3.2 103 176-312 9-112 (237)
198 PF00218 IGPS: Indole-3-glycer 20.8 46 0.001 34.2 1.1 42 227-268 141-182 (254)
199 PRK10425 DNase TatD; Provision 20.8 8.5E+02 0.018 24.8 10.4 63 354-421 106-174 (258)
200 COG1306 Uncharacterized conser 20.6 2E+02 0.0043 30.3 5.5 126 178-316 76-208 (400)
201 smart00518 AP2Ec AP endonuclea 20.4 3.4E+02 0.0074 27.3 7.5 60 166-248 3-62 (273)
202 PF13394 Fer4_14: 4Fe-4S singl 20.4 1.7E+02 0.0037 25.4 4.6 59 173-250 26-86 (119)
203 PF14488 DUF4434: Domain of un 20.4 6.4E+02 0.014 24.0 8.7 68 175-251 16-85 (166)
204 PRK14334 (dimethylallyl)adenos 20.3 1.4E+02 0.003 33.1 4.7 57 182-251 234-292 (440)
205 PRK14340 (dimethylallyl)adenos 20.2 1.6E+02 0.0034 32.7 5.2 56 181-249 244-303 (445)
No 1
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-111 Score=880.11 Aligned_cols=489 Identities=44% Similarity=0.801 Sum_probs=413.5
Q ss_pred CeeecCcEEEcCCC-----ceEEeCCceEEEeCCchhHHHHHHHHHHHHHhhc--CCccccccccCCCCCCcceEEEEEc
Q 007610 25 NVWPKPRIFSWPKP-----EATNLAAEFKIQAPMQTQLSSAVDRYLKLIKSEH--HHHLVRPSINISSSPPLQTLSISVD 97 (596)
Q Consensus 25 ~l~P~P~~~~~~~~-----~~~~l~~~~~i~~~~~~~l~~a~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~i~i~v~ 97 (596)
.+||.|+.+.+++. ....++.++... +.+..+.++++||...|+... ..+....-.. .......+.+++.
T Consensus 35 ~lWP~P~~~~~~~~l~~~i~~~~~~~~~~~~-~~~~il~a~~~ry~~~i~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~ 111 (542)
T KOG2499|consen 35 ALWPLPRTFSCGDELAPEIFYSQIDINLGAG-KGCAILRAAFDRYMNIIFGRVEWDPPLLSFHVK--LGGEAALITLTVT 111 (542)
T ss_pred ccccCCccccccccccccccceeecccccCC-cchhHHHHHHHHHhhhhhcccccCCccceeeee--ccceEEEEEEeec
Confidence 69999999988764 122222222222 246899999999999998742 1222111001 1111122333333
Q ss_pred C--CCCCCCCCCCcceEEEEecCCCeEEEEecChhhhhHHHHHHHHhhcC---CCeeeeeceEEeccCCcccccceecCC
Q 007610 98 N--ISVPLTHGVNESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWG---NPSCVAVGIYVWDEPLFSHRGLLLDTS 172 (596)
Q Consensus 98 ~--~~~~l~~~~~E~Y~L~i~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~---~~~~ip~~~~I~D~P~f~~RG~mlD~a 172 (596)
. ...++-.+.||+|+|.|+.+...+.|.|++.+||+||++||+||+.+ ++...+...+|+|+|||+|||+|||+|
T Consensus 112 ~~c~s~p~l~~~dEsYtL~V~~~~~~a~i~A~tvwGAlrglETfSqLv~~d~~~~~~~~~~~~I~D~PrF~hRGlLlDTS 191 (542)
T KOG2499|consen 112 VECPSLPTLHGVDESYTLVVSTTATFAVILANTVWGALRGLETFSQLVWGDSIGGLFMIATAYIQDKPRFGHRGLLLDTS 191 (542)
T ss_pred CCCCCcCcccccccceEEEeecCcceEEEeehhHHHHHHHHHHHHHHheeccCCceEEeeeeeEeccCCCcccceEEecc
Confidence 2 22334456799999999976778999999999999999999999984 223344588999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 173 RNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 173 R~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
|||+|++.||++||.||++||||||||++|+||||||++++|+|..+|||++++.||.+|+++||+||+.|||||+||||
T Consensus 192 Rhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 192 RHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred cceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHHhhCCcchh-ccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCceecCCCCcCc
Q 007610 253 TPGHSGSWAGAHPEIVS-CANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILP 331 (596)
Q Consensus 253 ~PGH~~a~~~~yp~l~~-~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~iHiGgDEv~~ 331 (596)
+|||+++|..+||+|.. | |. .++.++++++|||+++.||+|+++++.||.+.||+.+||+|||||..
T Consensus 272 ~PgHt~sWg~g~~~fl~p~-----------~~-~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~~~~HlGGDEV~~ 339 (542)
T KOG2499|consen 272 TPGHTGSWGPGYPDFLTPC-----------WS-SFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPDEFFHLGGDEVST 339 (542)
T ss_pred CCcccccccCCCCcccCCc-----------cc-ccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcHHHeecCCceeec
Confidence 99999999999999643 3 22 24567888999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhcCCcEEEeccccccCCcccCCCCCCCCCeEEEEeCCCc--h
Q 007610 332 ACWKSDSLIQSFLSTGG---TLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTIFQSWKNGT--E 406 (596)
Q Consensus 332 ~~w~~~p~~~~~m~~~g---~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~~~~~~~lp~~~~iv~~W~~~~--~ 406 (596)
.||+++|++|+||++.| +..+++.+|+++..+++.+.++++|+|+|.+.+.. .++ +++|||.|..+. .
T Consensus 340 ~CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~~------~i~-p~tiiq~W~~~~~~~ 412 (542)
T KOG2499|consen 340 PCWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNKR------KID-PRTIIQIWKIGTWYP 412 (542)
T ss_pred ccccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhccccc------cCC-CCceeeeeccCCccH
Confidence 99999999999999998 45578999999999999999999999999997532 234 799999999875 4
Q ss_pred hHHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccccCCCC-CCHhhhcccc
Q 007610 407 STKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDITEG-LTEEEKELVL 485 (596)
Q Consensus 407 ~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~~~Y~~dp~~~-l~~~~~~~il 485 (596)
...+...+||++|+|+..+||||++. |. .+|+++|+++|..+ .++++++.|+
T Consensus 413 ~~~k~v~~~~~~ivs~s~~wYLd~~~---------~g------------------~dw~~~Y~~~p~~~~g~~~~k~lVl 465 (542)
T KOG2499|consen 413 KELKIVTKGYRFIVSNSAAWYLDHIG---------YG------------------SDWRKVYNTEPLSGMGTPEQKKLVL 465 (542)
T ss_pred HHHHHHhccCceEEEeccceEeeccc---------cC------------------CChhheeeccccccCCCHHHhhhee
Confidence 67788899999999999999999642 31 25889999999754 4567888999
Q ss_pred eeeeeecccCCCCchhHhhHHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHHHHHHHHHCCCCCcCCCCcccccCCCcc
Q 007610 486 GGEVALWSEQADGTVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVNRGIGAEPIQPLWCLQNPGMC 565 (596)
Q Consensus 486 G~e~~lW~E~~~~~~~~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~~~Rl~~~~~rl~~~Gi~~~p~~p~~c~~~~~~c 565 (596)
|||+|||+|++|+++++.|+|||++|+|||+||.++ .+++.++.+||..|||||++|||.++|++|+||.++++.|
T Consensus 466 GGE~cmWgE~vD~t~L~~RlWPRAsA~AERLWS~~~----~~~~~~A~~Rl~~~RcrLv~RGi~A~p~~p~~C~~~~~~c 541 (542)
T KOG2499|consen 466 GGEVCMWGEYVDNTNLESRLWPRASAAAERLWSNKK----VSRLLDAYPRLHLFRCRLVARGIGAQPVQPGWCLQEEGEC 541 (542)
T ss_pred cceeeeehhhccccccccccccchhHHHHHhhcccc----cchHHHHHHHHHHHHHHHHhcCCCcCCCCCcccccCCCCC
Confidence 999999999999999999999999999999999543 4568999999999999999999999999999999999999
Q ss_pred e
Q 007610 566 N 566 (596)
Q Consensus 566 ~ 566 (596)
+
T Consensus 542 ~ 542 (542)
T KOG2499|consen 542 P 542 (542)
T ss_pred C
Confidence 5
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=2.5e-89 Score=724.99 Aligned_cols=345 Identities=48% Similarity=0.867 Sum_probs=308.3
Q ss_pred cccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHH
Q 007610 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGL 241 (596)
Q Consensus 162 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~ 241 (596)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+++|+|+++++||++|||+||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCc
Q 007610 242 DYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENF 321 (596)
Q Consensus 242 ~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~ 321 (596)
+|||+||||||+|||+.+++++||++..+... .|.. .+.+++.++|||++|+|++|+++|++|++++||++|
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~-------~~~~-~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~ 152 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYA-------VWRK-YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKY 152 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCc-------cccc-cccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999643211 1222 234456789999999999999999999999999999
Q ss_pred eecCCCCcCccccCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCcEEEeccccccCCcccCCCCCCCCCeEEE
Q 007610 322 FHSGGDEILPACWKSDSLIQSFLSTGG--TLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTIFQ 399 (596)
Q Consensus 322 iHiGgDEv~~~~w~~~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~~~~~~~lp~~~~iv~ 399 (596)
|||||||+...||.++|.|+++|+++| +..+++.+|++++.++|+++||++++|+|++.+.+ ..++ ++++|+
T Consensus 153 iHiGgDE~~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~~-----~~~~-~~~iv~ 226 (348)
T cd06562 153 FHLGGDEVNFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGV-----YLLP-KDTIVQ 226 (348)
T ss_pred eEeecCCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCCC-----ccCC-CCeEEE
Confidence 999999999999999999999999987 88999999999999999999999999999987543 2355 799999
Q ss_pred EeCCCchhHHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccccCCC-CCCH
Q 007610 400 SWKNGTESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDITE-GLTE 478 (596)
Q Consensus 400 ~W~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~~~Y~~dp~~-~l~~ 478 (596)
.|+++. .+++++++||+||+|+++++|||++++.+. .++.+|+++|+++|.. ..++
T Consensus 227 ~W~~~~-~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~----------------------~~~~~~~~~y~~~p~~~~~~~ 283 (348)
T cd06562 227 VWGGSD-ELKNVLAAGYKVILSSYDFWYLDCGFGGWV----------------------GPGNDWCDPYKNWPRIYSGTP 283 (348)
T ss_pred ECCCcH-HHHHHHHCCCCEEEeCCCcEEEeecCCCCC----------------------CCCCcHhhhhcCCCCCCCCCh
Confidence 999754 788999999999999999999999764321 1245688888888743 2333
Q ss_pred hhhcccceeeeeecccCCCCchhHhhHHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHHHHHHHHHCC
Q 007610 479 EEKELVLGGEVALWSEQADGTVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVNRG 547 (596)
Q Consensus 479 ~~~~~ilG~e~~lW~E~~~~~~~~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~~~Rl~~~~~rl~~~G 547 (596)
+..++|+|+|+|||+|++++..+++++|||++|+||++|+++. .++|.+|.+||..|++||.+||
T Consensus 284 ~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~a~AE~~W~~~~----~~~~~~f~~Rl~~~~~~l~~~g 348 (348)
T cd06562 284 EQKKLVLGGEACMWGEQVDDTNLDQRLWPRASALAERLWSGPS----DTNLTDAEPRLVEFRCRLVRRG 348 (348)
T ss_pred hhcccEEEEEEEeeeeeeCccceeehhhhhHHHHHHHhhCCCc----CCCHHHHHHHHHHHHHHHHhCc
Confidence 5678999999999999999889999999999999999999875 3459999999999999999998
No 3
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.7e-87 Score=725.92 Aligned_cols=350 Identities=26% Similarity=0.451 Sum_probs=297.2
Q ss_pred ccCCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCC-------------
Q 007610 158 DEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGE------------- 224 (596)
Q Consensus 158 D~P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~------------- 224 (596)
|+|||+|||||||+||||+|+++||++||.||++|||+||||||||||||+|+++||+||++|||+.
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999842
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhh----CCcchhcccc-----CcCCCCCccccc
Q 007610 225 ----------DYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGA----HPEIVSCANK-----FWWPAGTKWEDR 285 (596)
Q Consensus 225 ----------~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~----yp~l~~~~~~-----~~~~~~~~w~~~ 285 (596)
+++||++||++||+||++|||+||||||+|||+.+++++ ||+|..+... +.+.+..+....
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 468999999999999999999999999999999999876 8999654321 111111111110
Q ss_pred cccC-CCCCcCCCCChhHHHHHHHHHHHHHHhC-----CCCceecCCCCcCccccCCCHHHH--HHHHhCC--CHHHHHH
Q 007610 286 LASE-PGTGQLNPLHPKTFGVMINVLENVASIF-----PENFFHSGGDEILPACWKSDSLIQ--SFLSTGG--TLSEVLE 355 (596)
Q Consensus 286 ~~~~-~~~~~L~p~~~~t~~f~~~v~~Ev~~lF-----~~~~iHiGgDEv~~~~w~~~p~~~--~~m~~~g--~~~~l~~ 355 (596)
.+.+ ...++|||++|+||+|+++||+||+++| |++||||||||+...||++||.|+ ++|++++ +..+++.
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVEDLKD 240 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 1111 2357899999999999999999999999 679999999999999999999999 8998877 7889999
Q ss_pred HHHHHHHHHHHhcCCcEEEeccccccCCcccCCCCCCCCCeEEEEeCCC----chhHHHHHHcCCeEEEccCCceEeeCC
Q 007610 356 KFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTIFQSWKNG----TESTKKIVQAGYRVIVSSSDYYYLDCG 431 (596)
Q Consensus 356 ~f~~~~~~~l~~~gk~~i~W~d~~~~~~~~~~~~~lp~~~~iv~~W~~~----~~~~~~~~~~G~~vI~s~~~~~YlD~~ 431 (596)
+|++++.++|+++||++++|+|++...+.......++ ++++|++|+++ ...+.+++++||+||+|+++++|||++
T Consensus 241 ~f~~~v~~~l~~~Gk~~i~W~e~~~~~~~~~~~~~~~-~~~~v~~W~~~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~ 319 (445)
T cd06569 241 YFFERVSKILKAHGITLAGWEDGLLGKDTTNVDGFAT-PYVWNNVWGWGYWGGEDRAYKLANKGYDVVLSNATNLYFDFP 319 (445)
T ss_pred HHHHHHHHHHHHcCCeEEEecccccCCCcccccccCC-CCeEEEEccCCcccccHHHHHHHHCCCCEEEeCCCcEEEecC
Confidence 9999999999999999999999987543210012345 69999999864 256788999999999999999999997
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccccCC-----------------------CCCCHhhhcccceee
Q 007610 432 HGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDIT-----------------------EGLTEEEKELVLGGE 488 (596)
Q Consensus 432 ~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~~~Y~~dp~-----------------------~~l~~~~~~~ilG~e 488 (596)
++. ++.+.|.+||+++.+|+++|+|+|. .+++++++++|+|+|
T Consensus 320 ~~~--------------~~~~~g~~w~~~~~~~~~~y~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~e 385 (445)
T cd06569 320 YEK--------------HPEERGYYWAGRFVDTKKVFSFMPDNLYANAEVTRDGDPIDDTALNGKVRLTLEGPKNILGLQ 385 (445)
T ss_pred CCC--------------CCCcCCcccccCCCCHHHhhccCCchhhccchhhcccCccccccccccccCChhHhcceeEEE
Confidence 642 1244678999888999999999984 235567788999999
Q ss_pred eeecccCCC-CchhHhhHHHHHHHHHHHhccCCCC
Q 007610 489 VALWSEQAD-GTVVDARLWPRTSAMAEALWSGNRD 522 (596)
Q Consensus 489 ~~lW~E~~~-~~~~~~~~~PR~~A~AE~~Ws~~~~ 522 (596)
+|||+|+++ ...+++++|||++|+||++||+..+
T Consensus 386 ~~lWsE~v~~~~~l~~~~~PR~~A~AE~~Ws~~~~ 420 (445)
T cd06569 386 GQLWSETIRTDEQLEYMVFPRLLALAERAWHKAPW 420 (445)
T ss_pred EeeeccccCCHHHhHHHhhhHHHHHHHHHhcCCcc
Confidence 999999996 5689999999999999999999754
No 4
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.9e-86 Score=703.51 Aligned_cols=337 Identities=31% Similarity=0.574 Sum_probs=297.8
Q ss_pred cccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCC----------------C
Q 007610 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGE----------------D 225 (596)
Q Consensus 162 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~----------------~ 225 (596)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+|+++|+|++ +
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 899999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHH
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGV 305 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f 305 (596)
++||++|+++||+||++|||+||||||+|||+.+++++||+|..+.... ..+ .......++|||++|+|++|
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~-----~~~---~~~~~~~~~L~~~~~~t~~f 152 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPG-----SVV---SVQGVVSNVLCPGKPETYTF 152 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCC-----ccc---cccCcCCCccCCCChhHHHH
Confidence 7999999999999999999999999999999999999999996432211 001 11234567999999999999
Q ss_pred HHHHHHHHHHhCCCCceecCCCCcCccccCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCcEEEeccccccCC
Q 007610 306 MINVLENVASIFPENFFHSGGDEILPACWKSDSLIQSFLSTGG--TLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNE 383 (596)
Q Consensus 306 ~~~v~~Ev~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~ 383 (596)
+++|++|++++|+++||||||||+...||+++|.|+++|+++| +..+++.+|++++.++|+++|+++++|+|++...
T Consensus 153 ~~~ll~E~~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~~- 231 (357)
T cd06563 153 LEDVLDEVAELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEGG- 231 (357)
T ss_pred HHHHHHHHHHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeecccccC-
Confidence 9999999999999999999999999999999999999999987 6789999999999999999999999999997532
Q ss_pred cccCCCCCCCCCeEEEEeCCCchhHHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCC
Q 007610 384 IKVDPSYLYPEYTIFQSWKNGTESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKT 463 (596)
Q Consensus 384 ~~~~~~~lp~~~~iv~~W~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~ 463 (596)
++ ++++|++|++. ..+.+++++||+||+|+++++|||++++.+ + ..+..| .++.+
T Consensus 232 -------l~-~~~iv~~W~~~-~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~------~---------~~~~~~-~~~~~ 286 (357)
T cd06563 232 -------LP-PNATVMSWRGE-DGGIKAAKQGYDVIMSPGQYLYLDYAQSKG------P---------DEPASW-AGFNT 286 (357)
T ss_pred -------CC-CCcEEEECCCc-hHHHHHHHCCCCEEEeCCCceEEecCCCCC------C---------CCCccc-cCCCC
Confidence 44 89999999986 678899999999999999999999986532 1 112344 56889
Q ss_pred ccccccccCCCCC-CHhhhcccceeeeeecccCCC-CchhHhhHHHHHHHHHHHhccCCCCcchhhhHHHHHHHH
Q 007610 464 WQTVYNYDITEGL-TEEEKELVLGGEVALWSEQAD-GTVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRL 536 (596)
Q Consensus 464 w~~~Y~~dp~~~l-~~~~~~~ilG~e~~lW~E~~~-~~~~~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~~~Rl 536 (596)
|+++|+|+|.... +++.+++|+|||+|||+|+++ +..+++++|||++|+||++|+++. .++|++|..||
T Consensus 287 ~~~~y~~~P~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~W~~~~----~~~~~~f~~rl 357 (357)
T cd06563 287 LEKVYSFEPVPGGLTPEQAKRILGVQANLWTEYIPTPERVEYMAFPRLLALAEVAWTPPE----KKDWEDFRKRL 357 (357)
T ss_pred HHHHhcCCCCCCCCChhHhcCEEEEEEEecccccCCHHHHHHHHHHHHHHHHHHHhCCcc----CCCHHHHHhhC
Confidence 9999999997653 346788999999999999994 668999999999999999999974 35699999886
No 5
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2.1e-84 Score=674.97 Aligned_cols=309 Identities=36% Similarity=0.659 Sum_probs=276.3
Q ss_pred cccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHH
Q 007610 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGL 241 (596)
Q Consensus 162 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~ 241 (596)
|+|||+|||+||||+|+++||++||.||++|||+||||||||||||+|+++||+|+++|++ +++||++||+|||+||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~--~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASD--GLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCC--CCccCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999975 47999999999999999
Q ss_pred hcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCc
Q 007610 242 DYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENF 321 (596)
Q Consensus 242 ~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~ 321 (596)
+|||+||||||+|||+.+|+++||+|..|...+. ..+.|+. ..++|||++|+||+|+++|++|++++||++|
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~--~~~~~~~------~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~ 150 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAVAYPELASGPGPYV--IERGWGV------FEPLLDPTNEETYTFLDNLFGEMAELFPDEY 150 (311)
T ss_pred HcCCEEEEeecCccchHHHHHhCHHhccCCCccc--ccccccc------CCCccCCCChhHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999976543210 1112221 2358999999999999999999999999999
Q ss_pred eecCCCCcCccccCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCcEEEeccccccCCcccCCCCCCCCCeEEE
Q 007610 322 FHSGGDEILPACWKSDSLIQSFLSTGG--TLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTIFQ 399 (596)
Q Consensus 322 iHiGgDEv~~~~w~~~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~~~~~~~lp~~~~iv~ 399 (596)
|||||||+...||.++|.|+++|+++| +..+++.+|++++.++++++||++++|+|++.. .++ +++||+
T Consensus 151 iHiGgDE~~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~~--------~l~-~~~iv~ 221 (311)
T cd06570 151 FHIGGDEVDPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLHP--------DLP-KNVVIQ 221 (311)
T ss_pred eEeeccCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEecccccc--------CCC-CCeEEE
Confidence 999999999999999999999999987 778999999999999999999999999998742 255 799999
Q ss_pred EeCCCchhHHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccccCCCCCCHh
Q 007610 400 SWKNGTESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDITEGLTEE 479 (596)
Q Consensus 400 ~W~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~~~Y~~dp~~~l~~~ 479 (596)
.|.+ ...+.+++++||+||+|++ +|||+++ +++++|+++|.
T Consensus 222 ~W~~-~~~~~~~~~~G~~vI~s~~--~YlD~~~------------------------------~~~~~y~~~p~------ 262 (311)
T cd06570 222 SWRG-HDSLGEAAKAGYQGILSTG--YYIDQPQ------------------------------PAAYHYRVDPM------ 262 (311)
T ss_pred EeCC-chHHHHHHHCCCCEEEech--hheeCCC------------------------------chhheeCCCCc------
Confidence 9986 4568889999999999986 8999853 13568888874
Q ss_pred hhcccceeeeeecccCCCCchhHhhHHHHHHHHHHHhccCCCCcchhhhHHHHHHHH
Q 007610 480 EKELVLGGEVALWSEQADGTVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRL 536 (596)
Q Consensus 480 ~~~~ilG~e~~lW~E~~~~~~~~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~~~Rl 536 (596)
|+|||+|||+|++++.++++++|||++|+||++||++. .+++++|.+||
T Consensus 263 ----ilG~~~~lW~E~v~~~~~~~~~~PR~~A~AE~~Ws~~~----~~~~~~~~~Rl 311 (311)
T cd06570 263 ----ILGGEATMWAELVSEETIDSRLWPRTAAIAERLWSAQD----VRDEDDMYRRL 311 (311)
T ss_pred ----EEEEEEEEeecCcCHHHHHHHHhHHHHHHHHHhhCCCc----CCCHHHHHhhC
Confidence 99999999999999889999999999999999999874 35688998886
No 6
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=7.9e-83 Score=669.39 Aligned_cols=321 Identities=29% Similarity=0.482 Sum_probs=279.5
Q ss_pred cccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCC-----CCCCCCHHHHHHH
Q 007610 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYG-----EDYLYTPSDVKKI 236 (596)
Q Consensus 162 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~-----~~~~YT~~di~ei 236 (596)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+||..|+++ .+++||++||+||
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999874 5689999999999
Q ss_pred HHHHHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 007610 237 IEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASI 316 (596)
Q Consensus 237 v~yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~l 316 (596)
|+||++|||+||||||+|||+.+++++||+|. |.... . ....+.+++.++|||++|+|++|+++|++|++++
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~-~~~~~-----~--~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~ 152 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELN-CDGKA-----K--PLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL 152 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhc-cCCCC-----C--ccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999995 43211 0 0112234456789999999999999999999999
Q ss_pred CCCCceecCCCCcCccccCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCcEEEeccccccCCcccCCCCCCCCCe
Q 007610 317 FPENFFHSGGDEILPACWKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYT 396 (596)
Q Consensus 317 F~~~~iHiGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~~~~~~~lp~~~~ 396 (596)
||++||||||||+... ..+++.+|++++.++++++||++++|+|++.. .++ +++
T Consensus 153 f~~~~iHiGgDE~~~~-----------------~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~~--------~l~-~~~ 206 (329)
T cd06568 153 TPGPYIHIGGDEAHST-----------------PHDDYAYFVNRVRAIVAKYGKTPVGWQEIARA--------DLP-AGT 206 (329)
T ss_pred CCCCeEEEecccCCCC-----------------chHHHHHHHHHHHHHHHHCCCeEEEECccccc--------CCC-CCe
Confidence 9999999999999753 23578999999999999999999999998642 245 799
Q ss_pred EEEEeCCCc--hhHHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccccCCC
Q 007610 397 IFQSWKNGT--ESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDITE 474 (596)
Q Consensus 397 iv~~W~~~~--~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~~~Y~~dp~~ 474 (596)
||+.|+++. ..+.+++++||+||+|+++++|||++++. ....|..||+ +.+|+++|+|+|..
T Consensus 207 iv~~W~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~---------------~~~~~~~~~~-~~~~~~~y~~~P~~ 270 (329)
T cd06568 207 VAQYWSDRAPDADAAAALDKGAKVILSPADKAYLDMKYDA---------------DSPLGLTWAG-PVEVREAYDWDPAA 270 (329)
T ss_pred EEEECCCCCCchHHHHHHHCCCCEEEeCCCcEEEecCCCC---------------CCCCCcccCC-CCCHHHHeeeCCCC
Confidence 999999863 57889999999999999999999997531 0134567885 67999999999976
Q ss_pred CCCHhhhcccceeeeeecccCCCC-chhHhhHHHHHHHHHHHhccCCCCcchhhhHHHHHHHH
Q 007610 475 GLTEEEKELVLGGEVALWSEQADG-TVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRL 536 (596)
Q Consensus 475 ~l~~~~~~~ilG~e~~lW~E~~~~-~~~~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~~~Rl 536 (596)
....+++++|+|||+|||+|+++. ..+++++|||++|+|||+|+++. .++|++|..||
T Consensus 271 ~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~Ws~~~----~~~~~~f~~rl 329 (329)
T cd06568 271 YGPGVPDEAILGVEAPLWTETIRNLDDLEYMAFPRLAGVAEIGWSPQE----ARDWDDYKVRL 329 (329)
T ss_pred CCCcchhhCEEEEEEeecccccCCHHHHHHHHHhHHHHHHHHHhCCCc----CCCHHHHHhhC
Confidence 655556789999999999999975 58999999999999999999975 34689998885
No 7
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-77 Score=643.88 Aligned_cols=414 Identities=27% Similarity=0.440 Sum_probs=356.3
Q ss_pred CCcceEEEEecCCCeEEEEecChhhhhHHHHHHHHhhc-----CCCeeeeeceEEeccCCcccccceecCCCCCCCHHHH
Q 007610 107 VNESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVW-----GNPSCVAVGIYVWDEPLFSHRGLLLDTSRNYYEVDDI 181 (596)
Q Consensus 107 ~~E~Y~L~i~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~-----~~~~~ip~~~~I~D~P~f~~RG~mlD~aR~f~~~~~i 181 (596)
..|.|+|.++ +..|+|+|.+.+|+|||++||.||+. ++.+.+| .++|.|+|||.|||+|+|+||||+|++.+
T Consensus 204 ~~e~y~la~~--d~ai~v~a~~~aG~~y~~~tl~qL~t~a~s~qg~~~~p-~~~I~DaPRf~~rGllvDvaRqf~s~~~v 280 (732)
T COG3525 204 GEEAYRLAIN--DKAIKVTAHDLAGLFYADGTLLQLDTSADSFQGDIRFP-AVTIVDAPRFAWRGLLVDVARQFHSTDDV 280 (732)
T ss_pred cchhheeecc--cceeEEeeccccchhhhHHHHHhhhccccccCCCeeee-eeecccCcccchhhhhHhhhhhcCCHHHH
Confidence 5799999999 67899999999999999999999987 3456788 78899999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCC----------------CCCCHHHHHHHHHHHHhcCC
Q 007610 182 LRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGED----------------YLYTPSDVKKIIEYGLDYGV 245 (596)
Q Consensus 182 k~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~----------------~~YT~~di~eiv~yA~~rgI 245 (596)
|++||.|+.+|||+||||++||||||+||+++|+||..|+++.. ++||++++|+|++||++|+|
T Consensus 281 k~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~~relv~yAsar~I 360 (732)
T COG3525 281 KRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDDIRELVAYASARQI 360 (732)
T ss_pred HHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999998743 79999999999999999999
Q ss_pred EEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCceecC
Q 007610 246 RVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSG 325 (596)
Q Consensus 246 ~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~iHiG 325 (596)
+||||||+|||+.+.+.+||++.-.... |+. ...........|||+-+-+++|+++|++||.++||+.+||||
T Consensus 361 tviPeiD~PgHa~aav~A~p~~~l~~a~---~ds----~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiG 433 (732)
T COG3525 361 TVIPEIDMPGHARAAVVAYPDLNLGRAD---PDS----YDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIG 433 (732)
T ss_pred eecCCcCCcchhhhhhhhCccccccccC---CCc----chhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEec
Confidence 9999999999999999999965321100 111 001111122379999999999999999999999999999999
Q ss_pred CCCcCccccCC-CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCcEEEeccccccCCcccCCCCCCCCCeEEEEeC
Q 007610 326 GDEILPACWKS-DSLIQSFLSTGG--TLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTIFQSWK 402 (596)
Q Consensus 326 gDEv~~~~w~~-~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~~~~~~~lp~~~~iv~~W~ 402 (596)
|||+..+.|+. +|.|++.|.+.| +..+++.+|++++.+++.++|++.++|+|.+..+... ..-+- +++.|++|.
T Consensus 434 gDE~~~~qwk~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~e~~~~~~~~--~~~~t-~~~~vm~W~ 510 (732)
T COG3525 434 GDEFIDGQWKASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRRLIGWDEGAHGGDVN--GTALT-ANVTVMSWY 510 (732)
T ss_pred cchhccCeeeccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCceEEeecchhccCCCc--ccccc-CceEEEEEe
Confidence 99999999999 999999999887 5679999999999999999999999999998755421 11222 699999998
Q ss_pred CCchhHHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccc-cccccCC--CCCCHh
Q 007610 403 NGTESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQT-VYNYDIT--EGLTEE 479 (596)
Q Consensus 403 ~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~~-~Y~~dp~--~~l~~~ 479 (596)
+ .+....++++||+||+++..++|+|+.+. ..|.+.|.+|.... +.++ .|.+++. ..+.++
T Consensus 511 ~-~~~ai~~akqg~dvv~tp~~~~ylD~~q~--------------~~peepg~~~a~t~-~l~r~~y~~~~~g~~~~~de 574 (732)
T COG3525 511 G-KDKAIELAKQGYDVVLTPAQFVYLDMLQI--------------AAPEEPGYSWATTT-PLERNKYAYDFAGKQPINDE 574 (732)
T ss_pred c-chhhHHHHhhcccccccchhhhhhhhhcc--------------cccccCCCcccccc-ccchhhhhhcccCcccCChH
Confidence 6 56788999999999999999999999653 23567788997643 3444 8888774 334478
Q ss_pred hhcccceeeeeecccCCC-CchhHhhHHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHHHHHHHHHCCCCCcCC
Q 007610 480 EKELVLGGEVALWSEQAD-GTVVDARLWPRTSAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVNRGIGAEPI 553 (596)
Q Consensus 480 ~~~~ilG~e~~lW~E~~~-~~~~~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~~~Rl~~~~~rl~~~Gi~~~p~ 553 (596)
.+++++|.|+|+|+|++. ...+++++|||++|+|||+|++.. .+||..+..|+..+..+++..+|.+.+.
T Consensus 575 ~~k~~~G~q~~lWse~~~~~~~f~~~vfprl~a~aEraw~p~a----~~Dw~~~~~r~~~~~~l~~~~~~~~~~~ 645 (732)
T COG3525 575 LAKRILGVQAALWSEHIQTRGRFEYMVFPRLAAAAERAWTPMA----FNDWLYYLDRLSAQLPLLVLISIPYNAW 645 (732)
T ss_pred HhhhhhhhHHHHHHHHhhhhhHHHHHhcchHHHHHHhhCCchh----hcchhhhhhhcchhcchhhhhccccccc
Confidence 899999999999999986 457899999999999999999863 5679999999999999999999887553
No 8
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=3.4e-78 Score=641.72 Aligned_cols=335 Identities=38% Similarity=0.742 Sum_probs=282.5
Q ss_pred cccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCC---CCCHHHHHHHHH
Q 007610 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDY---LYTPSDVKKIIE 238 (596)
Q Consensus 162 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~---~YT~~di~eiv~ 238 (596)
|+|||+|||+||||+|+++||++||.||++|||+|||||+|+||||++++++|+|+.+|++++.. +||++||++||+
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999865 999999999999
Q ss_pred HHHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007610 239 YGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFP 318 (596)
Q Consensus 239 yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~ 318 (596)
||++|||+||||||+|||+.+++++||++..+. ++....+....+..+.+++|||++|+|++|+++|++||+++|+
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSA----WPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCH----TTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccc----cccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999996541 0111122222233344568999999999999999999999999
Q ss_pred CCceecCCCCcCccccCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCcEEEeccccccCCcccCCCCCCCCCe
Q 007610 319 ENFFHSGGDEILPACWKSDSLIQSFLSTGG--TLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYT 396 (596)
Q Consensus 319 ~~~iHiGgDEv~~~~w~~~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~~~~~~~lp~~~~ 396 (596)
+++|||||||++..||+++|.|+++|+++| +..+++.+|++++.++++++|+++++|+|++...+. ...++ +++
T Consensus 157 ~~~iHiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~---~~~~~-~~~ 232 (351)
T PF00728_consen 157 SKYIHIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPD---ASLLP-KDV 232 (351)
T ss_dssp SSEEEEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCC---GHCSC-TTE
T ss_pred CCeEEeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCc---ccccc-CCc
Confidence 999999999999999999999999999987 788999999999999999999999999999986541 12355 899
Q ss_pred EEEEeCCCc--hhHHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccccCCC
Q 007610 397 IFQSWKNGT--ESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDITE 474 (596)
Q Consensus 397 iv~~W~~~~--~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~~~Y~~dp~~ 474 (596)
+|+.|+++. ..+..++++||++|+|+.+++|||++++.|.. ..+..|+. +.+|+++|+|+|..
T Consensus 233 ~i~~W~~~~~~~~~~~~~~~g~~vI~s~~~~~Yld~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~~~~ 297 (351)
T PF00728_consen 233 IIQVWNYDWGPASAQEFAKKGYKVINSPSDYLYLDPGQSPWPE--------------EDGNYWAP-FNTWSDFYNWDPAY 297 (351)
T ss_dssp EEEEESSTTHHHHHHHHHHTTHEEEESTHGTGBTTTTSSTTTS--------------SSSBHTTS-THHHHHHHHHHHCH
T ss_pred eEEEeeccccchhhhHHHHhcCcEEEcCCCceEEccCcCCCCc--------------cCcccccc-cccccccccccccc
Confidence 999999853 56789999999999999999999998764321 23445553 67889999998753
Q ss_pred CC------CHhhh-cccceeeeeecccCC-CCchhHhhHHHHHHHHHHHhccC
Q 007610 475 GL------TEEEK-ELVLGGEVALWSEQA-DGTVVDARLWPRTSAMAEALWSG 519 (596)
Q Consensus 475 ~l------~~~~~-~~ilG~e~~lW~E~~-~~~~~~~~~~PR~~A~AE~~Ws~ 519 (596)
.. .+.+. ++|+|+++|||+|++ ++..+++++|||++|+||++|++
T Consensus 298 ~~~~~~~~~~~~~~~~i~G~~~~~W~E~~~~~~~l~~~~~Pr~~A~AE~~Ws~ 350 (351)
T PF00728_consen 298 FNTNSTQIDPAQKSERILGGEAALWSENIRDEEDLDYRLWPRLAALAERLWSP 350 (351)
T ss_dssp CTTTCSTTTTHHHCCCEEEEEEEEETTTTTSHHHHHHHHTTHHHHHHHHHHSS
T ss_pred cccccchhhhhcccCCCceeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 23444 599999999999999 67789999999999999999996
No 9
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1e-74 Score=603.22 Aligned_cols=294 Identities=33% Similarity=0.563 Sum_probs=258.2
Q ss_pred cccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccC----CCCCCCCCCHHHHHHHHHH
Q 007610 164 HRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKG----SYGEDYLYTPSDVKKIIEY 239 (596)
Q Consensus 164 ~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~G----a~~~~~~YT~~di~eiv~y 239 (596)
|||+|||+||||+|+++||++||.||.+|||+|||||+||||||+|+++||+|+++| +++++++||++||+|||+|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999998 5677889999999999999
Q ss_pred HHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC
Q 007610 240 GLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPE 319 (596)
Q Consensus 240 A~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~ 319 (596)
|++|||+||||||+|||+.+|+++||++..+ . ..+..|. ...++|||++|+|++|+++|++|++++||+
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~-~----~~~~~~~------~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~ 149 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTE-C----YAGLKLR------DVFDPLDPTLPKGYDFLDDLFGEIAELFPD 149 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccC-c----cccCCCC------CCCCccCCCCccHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999998642 1 1111221 234689999999999999999999999999
Q ss_pred CceecCCCCcCccccCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCcEEEeccccccCCcccCCCCCCCCCeEEE
Q 007610 320 NFFHSGGDEILPACWKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIKVDPSYLYPEYTIFQ 399 (596)
Q Consensus 320 ~~iHiGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~~~~~~~lp~~~~iv~ 399 (596)
++|||||||+... .+..+++.+|+++++++++++|+++++|+|++.... .++ ++++|+
T Consensus 150 ~~iHiGgDE~~~~---------------~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~------~l~-~~~ii~ 207 (303)
T cd02742 150 RYLHIGGDEAHFK---------------QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDKKM------KLK-EDVIVQ 207 (303)
T ss_pred CeEEecceecCCC---------------CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCCC------CCC-CCeEEE
Confidence 9999999999754 145688999999999999999999999999986432 355 899999
Q ss_pred EeCCCc----hhHHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccccCCCC
Q 007610 400 SWKNGT----ESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDITEG 475 (596)
Q Consensus 400 ~W~~~~----~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~~~Y~~dp~~~ 475 (596)
.|+++. ..+.+++++||+||+|++.|+|+.. ..+.+|+++|+++|...
T Consensus 208 ~W~~~~~~~~~~~~~~~~~G~~vi~s~~~yly~~~----------------------------~~~~~~~~~y~~~p~~~ 259 (303)
T cd02742 208 YWDYDGDKYNVELPEAAAKGFPVILSNGYYLDIFI----------------------------DGALDARKVYKNDPLAV 259 (303)
T ss_pred EccCCCCcchHHHHHHHHCCCCEEEeCCceeeeeC----------------------------CCCCCHHHHhCCCCCCC
Confidence 999864 5778899999999999997777611 01346899999998765
Q ss_pred CCHhhhcccceeeeeecccCCCCc-hhHhhHHHHHHHHHHHhcc
Q 007610 476 LTEEEKELVLGGEVALWSEQADGT-VVDARLWPRTSAMAEALWS 518 (596)
Q Consensus 476 l~~~~~~~ilG~e~~lW~E~~~~~-~~~~~~~PR~~A~AE~~Ws 518 (596)
.+++.+++|+|+++|||+|++++. .+++++|||++|+||++||
T Consensus 260 ~~~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~pr~~a~AE~~Ws 303 (303)
T cd02742 260 PTPQQKDLVLGVIACLWGETVKDTKTLQYRFWPRALAVAERSWS 303 (303)
T ss_pred CCcccccceEEEEEeeeccccCCHHHHHHHHHHHHHHHHHHhhC
Confidence 566677899999999999999865 8999999999999999997
No 10
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=5e-72 Score=588.93 Aligned_cols=299 Identities=27% Similarity=0.478 Sum_probs=255.9
Q ss_pred ccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCC---------------CCCCC
Q 007610 163 SHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSY---------------GEDYL 227 (596)
Q Consensus 163 ~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~---------------~~~~~ 227 (596)
++||+|||+||||+|+++||++||.||++|||+|||||+| +||++++.+|+++..|++ +.+++
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGY 78 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCc
Confidence 4899999999999999999999999999999999999999 799999999999976654 45789
Q ss_pred CCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHH
Q 007610 228 YTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMI 307 (596)
Q Consensus 228 YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~ 307 (596)
||++|||+||+||++|||+||||||+|||+.+|+++||++..+.. ...+..++|||++|+|++|++
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~--------------~~~~~~~~l~~~~~~t~~f~~ 144 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNP--------------FSKYDKDTLDISNPEAVKFVK 144 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCc--------------ccCCCcccccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999964321 012345789999999999999
Q ss_pred HHHHHHHHhCC--CCceecCCCCcCccccCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCcEEEeccccccCCcc
Q 007610 308 NVLENVASIFP--ENFFHSGGDEILPACWKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALDKTAIYWEDVILDNEIK 385 (596)
Q Consensus 308 ~v~~Ev~~lF~--~~~iHiGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~~ 385 (596)
+|++|++++|+ ++||||||||+... .+..+++.+|+++++++|+++||++++|+|++...+.
T Consensus 145 ~l~~E~~~~f~~~~~~~HiGgDE~~~~---------------~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~- 208 (326)
T cd06564 145 ALFDEYLDGFNPKSDTVHIGADEYAGD---------------AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGD- 208 (326)
T ss_pred HHHHHHHHhcCCCCCEEEecccccccc---------------CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCC-
Confidence 99999999999 99999999999764 1346789999999999999999999999999875431
Q ss_pred cCCCCCCCCCeEEEEeCCCchhHHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcc
Q 007610 386 VDPSYLYPEYTIFQSWKNGTESTKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQ 465 (596)
Q Consensus 386 ~~~~~lp~~~~iv~~W~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~ 465 (596)
...++ ++++|++|+++...+.+++++||+||+|++.++|||++++.| . .+.+|+
T Consensus 209 --~~~l~-~~~iv~~W~~~~~~~~~~~~~G~~vI~s~~~~~Y~~~~~~~~----------------------~-~~~~~~ 262 (326)
T cd06564 209 --TTVLS-KDVIINYWSYGWADPKELLNKGYKIINTNDGYLYIVPGAGYY----------------------G-DYLNTE 262 (326)
T ss_pred --cccCC-CCeEEEeCCCcccCHHHHHHCCCcEEEeCCCcEEEeCCCccC----------------------C-CccCHH
Confidence 13466 799999999865678899999999999999999999865321 0 123567
Q ss_pred ccccccCCCC------CCHhhhcccceeeeeecccCCC----CchhHhhHHHHHHHHHHHhccC
Q 007610 466 TVYNYDITEG------LTEEEKELVLGGEVALWSEQAD----GTVVDARLWPRTSAMAEALWSG 519 (596)
Q Consensus 466 ~~Y~~dp~~~------l~~~~~~~ilG~e~~lW~E~~~----~~~~~~~~~PR~~A~AE~~Ws~ 519 (596)
++|++.+... ..++++++|+|+|+|||+|+++ +..+++++|||++|+||++|++
T Consensus 263 ~~y~~~~~~~~~~~~~~~~~~~~~ilG~~~~lW~E~~~~~~t~~~~~~~~~pr~~a~Ae~~W~~ 326 (326)
T cd06564 263 DIYNNWTPNKFGGTNATLPEGDPQILGGMFAIWNDDSDAGISEVDIYDRIFPALPAFAEKTWGG 326 (326)
T ss_pred HHHhcCCccccCCCCccCCCCCCCcchhheeeecCCCCcCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 7776544211 3345678999999999999995 3689999999999999999985
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.9e-50 Score=420.14 Aligned_cols=291 Identities=20% Similarity=0.283 Sum_probs=221.9
Q ss_pred cccceecCCC-CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHh
Q 007610 164 HRGLLLDTSR-NYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLD 242 (596)
Q Consensus 164 ~RG~mlD~aR-~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~ 242 (596)
+||+|||+|| +|+++++||++||.||.+|+|+||||++|+ |+ ++++|++.. .++.||++||+||++||++
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~--f~--~~~~p~~~~-----~~~~yT~~ei~ei~~yA~~ 71 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDT--FP--YEGEPEVGR-----MRGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecc--ee--cCCCccccc-----CCCCcCHHHHHHHHHHHHH
Confidence 5999999999 999999999999999999999999999995 54 467888764 2467999999999999999
Q ss_pred cCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCce
Q 007610 243 YGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFF 322 (596)
Q Consensus 243 rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~i 322 (596)
|||+||||||+|||+.+|++ +|++....+ ...+.++|||++|+|++|+++|++|++++|++++|
T Consensus 72 ~gI~vIPeid~pGH~~~~l~-~~~~~~l~~---------------~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~ 135 (301)
T cd06565 72 LGIEVIPLIQTLGHLEFILK-HPEFRHLRE---------------VDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYI 135 (301)
T ss_pred cCCEEEecCCCHHHHHHHHh-Ccccccccc---------------cCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999987 455532110 01235789999999999999999999999999999
Q ss_pred ecCCCCcCccccCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCcEEEecccccc---CCcccCCCCCCCCCeEEE
Q 007610 323 HSGGDEILPACWKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALDKTAIYWEDVILD---NEIKVDPSYLYPEYTIFQ 399 (596)
Q Consensus 323 HiGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~---~~~~~~~~~lp~~~~iv~ 399 (596)
||||||+...+ .++.++++ ...+..+++..|+++++++++++|+++++|+|++.. .+.. ...|| ++++++
T Consensus 136 HIG~DE~~~~g--~~~~~~~~--~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~~~~~~~~~--~~~l~-~~v~~~ 208 (301)
T cd06565 136 HIGMDEAYDLG--RGRSLRKH--GNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKLSIEPEA--LSGLP-KLVTPV 208 (301)
T ss_pred EECCCcccccC--CCHHHHHh--cCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHhcCCCCChHH--HhCCC-CCeEEE
Confidence 99999998653 34555543 223788999999999999999999999999999975 2211 13677 899999
Q ss_pred EeCCCchh------HHHHHHcCCeEEEccCCceEeeCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccccCC
Q 007610 400 SWKNGTES------TKKIVQAGYRVIVSSSDYYYLDCGHGGFLGNDSLYDQPPEIQKAAGGGSWCSPFKTWQTVYNYDIT 473 (596)
Q Consensus 400 ~W~~~~~~------~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~w~~~Y~~dp~ 473 (596)
+|+++... .....+.|.+.+++++ ...|.+..+.++ ...+.+-+
T Consensus 209 ~W~y~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~w~~~~~~~~------------------~~~~n~~~---- 258 (301)
T cd06565 209 VWDYYADLDEHDRPIGLWKKYGSVFAVAWG--------ASAWKGATPPND------------------KHLENIKS---- 258 (301)
T ss_pred EecCcCCcchhhHhHHHHHHhCCCceEeee--------echhccCCCCHH------------------HHHHHHHH----
Confidence 99986532 3334455555555544 332221110000 00111111
Q ss_pred CCCCHhhhcccceeeeeecccCCCCchhHhhHHHHHHHHHHHhcc
Q 007610 474 EGLTEEEKELVLGGEVALWSEQADGTVVDARLWPRTSAMAEALWS 518 (596)
Q Consensus 474 ~~l~~~~~~~ilG~e~~lW~E~~~~~~~~~~~~PR~~A~AE~~Ws 518 (596)
.+....+..+.|.-.+.|++......+ ..++|-+++.||..|.
T Consensus 259 -~~~~~~~~~~~G~~~T~W~d~g~~~~~-~~~~p~~~~~~~~~~~ 301 (301)
T cd06565 259 -WLKAAKKNGVQGILLTGWGDYGHEAVL-CELLPGLIPSLALALG 301 (301)
T ss_pred -HHHHHHHCCCCEEEEEecCCCCCcccH-HHHHHHHHHHHHHhcC
Confidence 122345678999999999999876555 5689999999999884
No 12
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=99.67 E-value=5e-16 Score=140.88 Aligned_cols=122 Identities=21% Similarity=0.254 Sum_probs=86.0
Q ss_pred CCeeecCcEEEcCCCceEEeCCceEEEeCCchhHHHHHHHHHHHHHhhcCCccccccccCCCCCCcceEEEEEcCCCCCC
Q 007610 24 INVWPKPRIFSWPKPEATNLAAEFKIQAPMQTQLSSAVDRYLKLIKSEHHHHLVRPSINISSSPPLQTLSISVDNISVPL 103 (596)
Q Consensus 24 ~~l~P~P~~~~~~~~~~~~l~~~~~i~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~i~v~~~~~~l 103 (596)
+.|||.|++++..++ .|.|+.+++|++.. ....+++.++++.|....+..+... .......|.+...+.
T Consensus 2 ~~iiP~P~~~~~~~g-~~~l~~~~~i~~~~-~~~~~~~~~l~~~l~~~~g~~~~~~-----~~~~~~~i~~~~~~~---- 70 (124)
T PF02838_consen 2 PSIIPQPQSITLTGG-TFTLPQSTKIVVDD-PELKAAAERLQDILKRLTGISLSSS-----GSPNKIDIRLLLDDD---- 70 (124)
T ss_dssp ---SS--SEEEEEEE-EEEETTTEEEEETT-CSHHHHHHHHHHHHHHHHTECCCEC-----SETTSEEEEEECTTC----
T ss_pred CcEEccccEEEECCC-EEEECCCcEEEECC-cccHHHHHHHHHHHHHHhCCccccc-----CCCCCceEEEeecCC----
Confidence 579999999998764 89999999999754 4567788888888885555443211 112233444433222
Q ss_pred CCCCCcceEEEEecCCCeEEEEecChhhhhHHHHHHHHhhcCCC-eeeeeceEEecc
Q 007610 104 THGVNESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGNP-SCVAVGIYVWDE 159 (596)
Q Consensus 104 ~~~~~E~Y~L~i~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~-~~ip~~~~I~D~ 159 (596)
....+|||+|+|+ .++|+|+|.+..|+|||+|||+||+.+.. ..+| +++|+|+
T Consensus 71 ~~~~~E~Y~L~i~--~~~I~I~a~~~~G~~yg~qTL~Qll~~~~~~~lp-~~~I~D~ 124 (124)
T PF02838_consen 71 AGLGEEGYRLSIS--PKGITIEASDPAGLFYGLQTLRQLLRQSGNGTLP-CVEIEDY 124 (124)
T ss_dssp CTSTTT-EEEEEE--SSEEEEEESSHHHHHHHHHHHHHHSBTCS-CEEE-EEEEEE-
T ss_pred CCCCCcceEEEEE--CCEEEEEEcCchHHHHHHHHHHHHhhccCCCccc-eEEEEeC
Confidence 2236899999999 57899999999999999999999999532 4799 8899996
No 13
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=99.56 E-value=2.1e-14 Score=131.27 Aligned_cols=115 Identities=39% Similarity=0.598 Sum_probs=74.2
Q ss_pred eeecCcEEEcCCCceEEeCC-ceEEEeC--C----chhHHHHHHHHHHHHHhhcCCccccccccC---CCCCCcceEEEE
Q 007610 26 VWPKPRIFSWPKPEATNLAA-EFKIQAP--M----QTQLSSAVDRYLKLIKSEHHHHLVRPSINI---SSSPPLQTLSIS 95 (596)
Q Consensus 26 l~P~P~~~~~~~~~~~~l~~-~~~i~~~--~----~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~i~i~ 95 (596)
|||+|+.+++++. .+.++. ++.+... . .+.|.+|++||.+.|+.....+........ ........|.|.
T Consensus 1 lWP~P~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~I~ 79 (128)
T PF14845_consen 1 LWPKPQSISLGST-VFSLDPSNFKFNFSGSSSNSCSDILQEAIDRYLKLIFKQNPSPCASHSRGSSFKPKSGYLSSLEIT 79 (128)
T ss_dssp -SS--SEEEEECE-EEEEECCCEEEEEETTTSTTTHHHHHHHHHHHHHHHHT--TS-TT----S-----BE-ECEEEEEE
T ss_pred CCCCCcEEEECCc-eEEEchhhEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccccCCcccccccCCCcceEEEEE
Confidence 7999999999764 788887 6777632 2 388999999999999987554432211000 001234567788
Q ss_pred EcCCCCC--CCCCCCcceEEEE-ecCCCeEEEEecChhhhhHHHHHHHHh
Q 007610 96 VDNISVP--LTHGVNESYSLTI-TSDENTAYLVASTVWGAMRGLETFSQL 142 (596)
Q Consensus 96 v~~~~~~--l~~~~~E~Y~L~i-~~~~~~i~I~a~~~~G~~~gl~Tl~QL 142 (596)
|.+.+.. +..+.||+|+|+| +.+ +.|+|+|++.+|++|||+||.||
T Consensus 80 v~~~~~~~~l~~~~DESY~L~v~s~~-~~~~I~A~tv~GalrgLETlsQL 128 (128)
T PF14845_consen 80 VTSDDEDSELQLGMDESYSLSVPSTN-GQATITANTVWGALRGLETLSQL 128 (128)
T ss_dssp ESSSSTTSS--TT----EEEEETSSS-EEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEecCCccccCCCCCCCEEEEEecCC-ceEEEEECChhhhhHHHHHHhhC
Confidence 8665433 7778999999999 532 27999999999999999999998
No 14
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.39 E-value=0.0085 Score=63.20 Aligned_cols=195 Identities=15% Similarity=0.218 Sum_probs=116.4
Q ss_pred ccccceecCCC--CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccc-ccCCCCccccc-cCCCCCCCCCCHHHHHHHHH
Q 007610 163 SHRGLLLDTSR--NYYEVDDILRTISAMSANKLNVFHWHITDSHSFP-LLLPSDPNLAA-KGSYGEDYLYTPSDVKKIIE 238 (596)
Q Consensus 163 ~~RG~mlD~aR--~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~fr-le~~~~P~Lt~-~Ga~~~~~~YT~~di~eiv~ 238 (596)
+.||+=|++.. .+...+.+.++|+.|...++|++-++..- .|-- +.++-.|.... .|..+ ..-..+=++.+|+
T Consensus 1 E~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~~~--~~pg~DpL~~~I~ 77 (311)
T PF02638_consen 1 EFRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGKQG--KDPGFDPLEFMIE 77 (311)
T ss_pred CeEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCCCC--CCCCccHHHHHHH
Confidence 46888888865 33468899999999999999999888764 3443 23333442211 11111 1123567999999
Q ss_pred HHHhcCCEEEecc--CCCChhh-hHHhhCCcchhccccCcCCCCCcccccccc-CCCCCcCCCCChhHHHHHHHHHHHHH
Q 007610 239 YGLDYGVRVVPEI--DTPGHSG-SWAGAHPEIVSCANKFWWPAGTKWEDRLAS-EPGTGQLNPLHPKTFGVMINVLENVA 314 (596)
Q Consensus 239 yA~~rgI~VIPEI--D~PGH~~-a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~-~~~~~~L~p~~~~t~~f~~~v~~Ev~ 314 (596)
-|++|||+|.+=+ -+.++.. .+...+|+-..... ..|...... .....-|||.+|++.+|+.+++.|+.
T Consensus 78 eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv 150 (311)
T PF02638_consen 78 EAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNH-------PGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIV 150 (311)
T ss_pred HHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecC-------CCceeecccCCCCceEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999876 2233322 23445665432111 112211100 01122599999999999999999999
Q ss_pred HhCCCCceecCCCCcCc--cccCC-CHHHHHHHHhCC-----CH---------HHHHHHHHHHHHHHHHhcC
Q 007610 315 SIFPENFFHSGGDEILP--ACWKS-DSLIQSFLSTGG-----TL---------SEVLEKFINFVFPFIVALD 369 (596)
Q Consensus 315 ~lF~~~~iHiGgDEv~~--~~w~~-~p~~~~~m~~~g-----~~---------~~l~~~f~~~~~~~l~~~g 369 (596)
+-++-.=||+ |-+.. ..++. .+..+.|.+..| +. .+-...|++++.+.+++.+
T Consensus 151 ~~YdvDGIhl--Ddy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~k 220 (311)
T PF02638_consen 151 KNYDVDGIHL--DDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIK 220 (311)
T ss_pred hcCCCCeEEe--cccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9887655663 32221 11222 233455555432 11 2334567888888887754
No 15
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.94 E-value=0.024 Score=59.72 Aligned_cols=172 Identities=17% Similarity=0.218 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCChh
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHS 257 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~ 257 (596)
.+.+.++|+.+...++|.+-+-+.||.|.-.--...|...+.|+.. .+ ..|+++|++.++++||.+|--|=++--.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~---~~-i~D~~~l~~~l~e~gIY~IARIv~FkD~ 87 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVK---PY-IKDLKALVKKLKEHGIYPIARIVVFKDP 87 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccc---cc-ccCHHHHHHHHHHCCCEEEEEEEEecCh
Confidence 4678999999999999999999999998732212345566667643 22 4799999999999999999888666522
Q ss_pred hhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCceecCCCCcCccccCCC
Q 007610 258 GSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGDEILPACWKSD 337 (596)
Q Consensus 258 ~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~iHiGgDEv~~~~w~~~ 337 (596)
. ....+|++..-. .+++.|..+. ...=+||.++++.+.+-+|-+|.+++ |-||+..+ +-..
T Consensus 88 ~-la~~~pe~av~~-----~~G~~w~d~~----~~~WvnP~~~evw~Y~i~IA~Eaa~~--------GFdEIqfD-YIRF 148 (316)
T PF13200_consen 88 V-LAEAHPEWAVKT-----KDGSVWRDNE----GEAWVNPYSKEVWDYNIDIAKEAAKL--------GFDEIQFD-YIRF 148 (316)
T ss_pred H-HhhhChhhEEEC-----CCCCcccCCC----CCccCCCCCHHHHHHHHHHHHHHHHc--------CCCEEEee-eeec
Confidence 2 223478885411 3445565422 22358999999999999999999875 44444321 1111
Q ss_pred HH--HHHHHH-hCC----CHHHHHHHHHHHHHHHHHhcCCcE
Q 007610 338 SL--IQSFLS-TGG----TLSEVLEKFINFVFPFIVALDKTA 372 (596)
Q Consensus 338 p~--~~~~m~-~~g----~~~~l~~~f~~~~~~~l~~~gk~~ 372 (596)
|. ..+-+. ..+ +..+....|++.+.+.|+.+|..+
T Consensus 149 P~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 149 PDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred CCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 11 000000 001 245778999999999999988654
No 16
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.087 Score=57.28 Aligned_cols=151 Identities=13% Similarity=0.119 Sum_probs=94.1
Q ss_pred Ccccccceec--CCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccc-cCCCCCCCCCCHHHHHHHH
Q 007610 161 LFSHRGLLLD--TSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA-KGSYGEDYLYTPSDVKKII 237 (596)
Q Consensus 161 ~f~~RG~mlD--~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~-~Ga~~~~~~YT~~di~eiv 237 (596)
.=+.||+=|| .++..+.-..+++.+|.+....+|++-.-..-+--=-+.+...|.-.. .|..+... -.+=+.++|
T Consensus 44 ~~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~--g~DpLa~~I 121 (418)
T COG1649 44 PQEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDP--GYDPLAFVI 121 (418)
T ss_pred cccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCC--CCChHHHHH
Confidence 3578999998 557888899999999999999999998876543111122222232211 01111111 135589999
Q ss_pred HHHHhcCCEEEeccCCCChhhh---HHhhCCcchhccccCcCCCCCccccccccCC-CCCcCCCCChhHHHHHHHHHHHH
Q 007610 238 EYGLDYGVRVVPEIDTPGHSGS---WAGAHPEIVSCANKFWWPAGTKWEDRLASEP-GTGQLNPLHPKTFGVMINVLENV 313 (596)
Q Consensus 238 ~yA~~rgI~VIPEID~PGH~~a---~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~-~~~~L~p~~~~t~~f~~~v~~Ev 313 (596)
+-|++|||+|+|=++.-.-+-. ..+.+|+-.... ...|-....... ....|||..|++-+|+.+++-|+
T Consensus 122 ~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~ev 194 (418)
T COG1649 122 AEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTK-------RPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEV 194 (418)
T ss_pred HHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccC-------CCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHH
Confidence 9999999999997764322211 223344432211 112221111100 13469999999999999999999
Q ss_pred HHhCCCC
Q 007610 314 ASIFPEN 320 (596)
Q Consensus 314 ~~lF~~~ 320 (596)
..-++..
T Consensus 195 V~~YdvD 201 (418)
T COG1649 195 VRNYDVD 201 (418)
T ss_pred HhCCCCC
Confidence 9877643
No 17
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.70 E-value=0.12 Score=47.60 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=81.0
Q ss_pred HHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHH
Q 007610 182 LRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWA 261 (596)
Q Consensus 182 k~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~ 261 (596)
+++++.|...+.|.+-+...+-.||-+ ||-- .|. ....++.+=++|+|+-|+++||+|+-=+|.--+.. +.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ay----YPt~--~~~--~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~ 73 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAY----YPTK--VGP--RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDED-AA 73 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEE----ccCC--CCc--CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChH-HH
Confidence 678999999999999998877777654 3321 122 13456666679999999999999999998774443 44
Q ss_pred hhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC
Q 007610 262 GAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPE 319 (596)
Q Consensus 262 ~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~ 319 (596)
..+||...-. ++|++........+....+|+.. .-.+++...++|+++.++-
T Consensus 74 ~~HPeW~~~~-----~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~~ 125 (132)
T PF14871_consen 74 ERHPEWFVRD-----ADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRYDV 125 (132)
T ss_pred HhCCceeeEC-----CCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcCCC
Confidence 5699885321 22221000000111223456654 5669999999999998763
No 18
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=95.49 E-value=0.12 Score=54.38 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=81.8
Q ss_pred ccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCH---HHHHHHHHHHH
Q 007610 165 RGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTP---SDVKKIIEYGL 241 (596)
Q Consensus 165 RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~---~di~eiv~yA~ 241 (596)
||+.----...++.+.-+++|+.|+.+|||++-.-..||.=-| ..|+ +.|+. +++++|++.|+
T Consensus 1 RGvIEGFYG~PWs~e~R~~l~~f~~~~kmN~YiYAPKdDpyhr------------~~Wr--e~Yp~~el~~l~~L~~~a~ 66 (306)
T PF07555_consen 1 RGVIEGFYGRPWSHEDRLDLIRFLGRYKMNTYIYAPKDDPYHR------------SKWR--EPYPEEELAELKELADAAK 66 (306)
T ss_dssp EEEEE-SSSS---HHHHHHHHHHHHHTT--EEEE--TT-TTTT------------TTTT--S---HHHHHHHHHHHHHHH
T ss_pred CCceeCcCCCCCCHHHHHHHHHHHHHcCCceEEECCCCChHHH------------hhhc--ccCCHHHHHHHHHHHHHHH
Confidence 6777666677888999999999999999999998887773111 1222 34654 56889999999
Q ss_pred hcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCc
Q 007610 242 DYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENF 321 (596)
Q Consensus 242 ~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~ 321 (596)
+.||++|=-| +|.+. ++-+.++.++-|.+=++++.++ .-..
T Consensus 67 ~~~V~Fv~ai------------sPg~~--------------------------~~~s~~~d~~~L~~K~~ql~~l-Gvr~ 107 (306)
T PF07555_consen 67 ANGVDFVYAI------------SPGLD--------------------------ICYSSEEDFEALKAKFDQLYDL-GVRS 107 (306)
T ss_dssp HTT-EEEEEE------------BGTTT----------------------------TSHHHHHHHHHHHHHHHHCT-T--E
T ss_pred HcCCEEEEEE------------Ccccc--------------------------cccCcHHHHHHHHHHHHHHHhc-CCCE
Confidence 9999999665 23221 1223566777777777777775 2233
Q ss_pred eecCCCCcCccccCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 007610 322 FHSGGDEILPACWKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVAL 368 (596)
Q Consensus 322 iHiGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~ 368 (596)
|=|=.|.+...-|..+.. ......+.+..++|++.+.+.+.
T Consensus 108 FailfDDi~~~~~~~~~~------~~~~~~~~q~~l~n~v~~~l~~~ 148 (306)
T PF07555_consen 108 FAILFDDIDGDLWHCDKD------DFNSLAQAQARLLNRVNKELIKK 148 (306)
T ss_dssp EEEE-TS-SSC--TTTTT------T-SCHHHHHHHHHHHHHHHTTTC
T ss_pred EEEeecCCCCcccccccc------ccchHHHHHHHHHHHHHHHHhcc
Confidence 444344444321111100 01246678899999998887763
No 19
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=94.78 E-value=0.21 Score=45.21 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=51.7
Q ss_pred EEEeC-CchhHHHHHHHHHHHHHhhcCCccccccccCCCCCCcceEEEEEcCCCCC---------CCCCCCcceEEEEe-
Q 007610 48 KIQAP-MQTQLSSAVDRYLKLIKSEHHHHLVRPSINISSSPPLQTLSISVDNISVP---------LTHGVNESYSLTIT- 116 (596)
Q Consensus 48 ~i~~~-~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~i~v~~~~~~---------l~~~~~E~Y~L~i~- 116 (596)
.|++. .++.+..|++.++..|....+...... + .......|.|-..+.... +....+|||.|..-
T Consensus 23 ~I~~~~~~~~~~~A~~EL~~~l~~i~G~~~~~~--~--~~~~~~~iviGt~~~~~~~~~~~~~~~~~~l~~EGy~I~~v~ 98 (122)
T PF03648_consen 23 NIVVLGNSPVVQTAAEELQRGLKGILGKEPPVS--S--EPPESSAIVIGTLDDSPLIDELILDDELAQLGEEGYIIRTVE 98 (122)
T ss_dssp EEEE---SHHHHHHHHHHHHHHHHHHTS--EEE--S--SS-TTSEEEEEEGGG-SSHHHT--HHHHTTTSTT-EEEEEEE
T ss_pred EEEEcCCChHHHHHHHHHHHHHHHHhCCCCccc--c--CCCCCceEEEEECccchhhhhhccchhhhccCCccEEEEEEe
Confidence 34433 357788899999999988766543211 1 112223466654332111 11236899999982
Q ss_pred -cCCCeEEEEecChhhhhHHHHH
Q 007610 117 -SDENTAYLVASTVWGAMRGLET 138 (596)
Q Consensus 117 -~~~~~i~I~a~~~~G~~~gl~T 138 (596)
.+.+.+.|.|++..|++||+=.
T Consensus 99 ~~~~~~lvI~g~~~~G~LYGvF~ 121 (122)
T PF03648_consen 99 IGGKNVLVIAGKTERGVLYGVFH 121 (122)
T ss_dssp SSSSEEEEEEESSHHHHHHHHHH
T ss_pred cCCCCEEEEEeCCCcEEEEEEee
Confidence 1256899999999999999744
No 20
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=94.49 E-value=0.13 Score=53.03 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 173 RNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 173 R~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
++-...+..|++||..|.+++-.+.+ |.||.- ... ...+..-..+...+|+|||+||+++||.|+-=..
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~--~~~-----~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLV----DAGWYG--WEK-----DDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCG--S-------TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEe----cccccc--ccc-----cccccccccCCccCHHHHHHHHHHcCCCEEEEEe
Confidence 34567999999999999999998877 789953 100 0011112346789999999999999988875433
Q ss_pred CCC---------hhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 007610 253 TPG---------HSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASI 316 (596)
Q Consensus 253 ~PG---------H~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~l 316 (596)
.-+ ++..+++.|. .|+... .. .+-++-.+.++.++.++|+++-++.
T Consensus 95 ~~~~~~~~~~~~~~~~~f~~~~---------------~~Gv~G-vK--idF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 95 SETGGNVANLEKQLDEAFKLYA---------------KWGVKG-VK--IDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CCHTTBHHHHHCCHHHHHHHHH---------------HCTEEE-EE--EE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred CCcchhhHhHHHHHHHHHHHHH---------------HcCCCE-Ee--eCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 222 1111222222 222210 00 1235557899999999999998873
No 21
>PRK12313 glycogen branching enzyme; Provisional
Probab=92.95 E-value=0.92 Score=52.62 Aligned_cols=127 Identities=10% Similarity=0.050 Sum_probs=76.0
Q ss_pred CCCHHHH-HHHHHHHHhCCCcEEEEEeec----CCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 175 YYEVDDI-LRTISAMSANKLNVFHWHITD----SHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 175 f~~~~~i-k~~Id~ma~~KlN~lh~HltD----dq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
+-+...| .++||.+..+++|.+++=..= ..+|.|....|=.+. . .+=|.+|+|+||+-|.+|||+||-
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~--~-----~~Gt~~d~k~lv~~~H~~Gi~Vil 238 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPT--S-----RYGTPEDFMYLVDALHQNGIGVIL 238 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCC--C-----CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3444444 466899999999999874321 123444433331111 1 122799999999999999999999
Q ss_pred ccCCCChhhhHHhhCCcchhccccCcCCCC-----CccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007610 250 EIDTPGHSGSWAGAHPEIVSCANKFWWPAG-----TKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFP 318 (596)
Q Consensus 250 EID~PGH~~a~~~~yp~l~~~~~~~~~~~~-----~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~ 318 (596)
.+ +|.|+..-....+.+.. ...+..+++ ..|+ ...||-.+|++.+++.+++.-.++-|.
T Consensus 239 D~-V~nH~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~--------~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 239 DW-VPGHFPKDDDGLAYFDG-TPLYEYQDPRRAENPDWG--------ALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred EE-CCCCCCCCcccccccCC-CcceeecCCCCCcCCCCC--------CcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 98 58998531111111100 000000010 1121 125788999999999999888877543
No 22
>smart00642 Aamy Alpha-amylase domain.
Probab=92.72 E-value=0.59 Score=44.71 Aligned_cols=75 Identities=9% Similarity=0.179 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecC------CcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDS------HSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDd------q~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPE 250 (596)
..+.|.+-++.++..++|.+++-..=. ..+.|....|-.+.+ .+=|.+|++++|+-|+++||+||-.
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-------~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-------RFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-------ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 467788888899999999998843211 112232222222211 1127899999999999999999999
Q ss_pred cCCCChhhh
Q 007610 251 IDTPGHSGS 259 (596)
Q Consensus 251 ID~PGH~~a 259 (596)
+ +|.|+..
T Consensus 90 ~-V~NH~~~ 97 (166)
T smart00642 90 V-VINHTSD 97 (166)
T ss_pred E-CCCCCCC
Confidence 8 6888865
No 23
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=92.55 E-value=0.6 Score=47.40 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=89.7
Q ss_pred cccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHH
Q 007610 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGL 241 (596)
Q Consensus 162 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~ 241 (596)
+.+||+-.. +..-....+.++.|+..++|.+-+++. |..-.+..|.. .+ ..-..+.++++|+.|+
T Consensus 8 v~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~----~~---~~~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 8 VNWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGY----NY---DETYLARLDRIVDAAQ 72 (281)
T ss_dssp EEEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTT----SB---THHHHHHHHHHHHHHH
T ss_pred EEeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCc----cc---cHHHHHHHHHHHHHHH
Confidence 367777765 443337889999999999999999886 31111111111 00 0113578999999999
Q ss_pred hcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCc
Q 007610 242 DYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENF 321 (596)
Q Consensus 242 ~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~ 321 (596)
++||.||..+-.. |.. +. .+......+...+.+.++++.++.-|.+.-
T Consensus 73 ~~gi~vild~h~~----------~~w--~~--------------------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~ 120 (281)
T PF00150_consen 73 AYGIYVILDLHNA----------PGW--AN--------------------GGDGYGNNDTAQAWFKSFWRALAKRYKDNP 120 (281)
T ss_dssp HTT-EEEEEEEES----------TTC--SS--------------------STSTTTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hCCCeEEEEeccC----------ccc--cc--------------------cccccccchhhHHHHHhhhhhhccccCCCC
Confidence 9999999866322 111 10 011223345567778888888888884322
Q ss_pred eecCCCCcCccccCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCc
Q 007610 322 FHSGGDEILPACWKSDSLIQSFLSTGGTLSEVLEKFINFVFPFIVALDKT 371 (596)
Q Consensus 322 iHiGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~ 371 (596)
-++|=|=.+.......+ ..+ .....+.+..|.+++.+.|++.+.+
T Consensus 121 ~v~~~el~NEP~~~~~~--~~w---~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 121 PVVGWELWNEPNGGNDD--ANW---NAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp TTEEEESSSSGCSTTST--TTT---SHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred cEEEEEecCCccccCCc--ccc---ccccchhhhhHHHHHHHHHHhcCCc
Confidence 24443212211100000 000 0012355788899999999987643
No 24
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=92.11 E-value=1.3 Score=50.36 Aligned_cols=119 Identities=12% Similarity=0.172 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecC----CcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCC
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDS----HSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDT 253 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDd----q~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~ 253 (596)
..-|.+-||.++.+++|.+++-..-+ .+|.|....|=.+ ...| =|.+|+|++|+-|.++||+||-.+ +
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~--~~~~-----G~~~e~k~lV~~aH~~Gi~VilD~-V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAP--HNAY-----GGPDDLKALVDAAHGLGLGVILDV-V 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccc--cccc-----CCHHHHHHHHHHHHHCCCEEEEEE-c
Confidence 45566668999999999998854421 2344433222111 1122 279999999999999999999888 5
Q ss_pred CChhhhHHhhCCcchhccccCcC-CCCCccccccccCCCCCcCCCCCh---hHHHHHHHHHHHHHHhC
Q 007610 254 PGHSGSWAGAHPEIVSCANKFWW-PAGTKWEDRLASEPGTGQLNPLHP---KTFGVMINVLENVASIF 317 (596)
Q Consensus 254 PGH~~a~~~~yp~l~~~~~~~~~-~~~~~w~~~~~~~~~~~~L~p~~~---~t~~f~~~v~~Ev~~lF 317 (596)
+.|++.-....+.+ + . ++- ...+.|+ ..+|-.++ ++.+++.+.+.-.++-|
T Consensus 182 ~NH~~~~~~~~~~~--~-~-y~~~~~~~~wg---------~~~n~~~~~~~~vr~~i~~~~~~W~~e~ 236 (542)
T TIGR02402 182 YNHFGPEGNYLPRY--A-P-YFTDRYSTPWG---------AAINFDGPGSDEVRRYILDNALYWLREY 236 (542)
T ss_pred cCCCCCcccccccc--C-c-cccCCCCCCCC---------CccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 78985321111111 0 0 100 0112232 24677777 88888887776666433
No 25
>PLN02960 alpha-amylase
Probab=92.00 E-value=1.3 Score=52.60 Aligned_cols=126 Identities=10% Similarity=0.150 Sum_probs=77.0
Q ss_pred CCHHHH-HHHHHHHHhCCCcEEEEEee----cCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 007610 176 YEVDDI-LRTISAMSANKLNVFHWHIT----DSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 176 ~~~~~i-k~~Id~ma~~KlN~lh~Hlt----Ddq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPE 250 (596)
-+...+ .+.|+.+..+++|.+.+-.. +..+|.|....|=.. .+.| =|.+|++++|+-|.++||.||-.
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~--~~~y-----Gtp~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAV--SSRF-----GTPDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCc--cccc-----CCHHHHHHHHHHHHHCCCEEEEE
Confidence 344455 46799999999999888544 233454443333111 1222 27999999999999999999998
Q ss_pred cCCCChhhhHH-hhCCcchhccccCcCCC----CCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 007610 251 IDTPGHSGSWA-GAHPEIVSCANKFWWPA----GTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIF 317 (596)
Q Consensus 251 ID~PGH~~a~~-~~yp~l~~~~~~~~~~~----~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF 317 (596)
+ +|.|+..-. .....+......+.-.+ ...|+ +..+|..++++.+|+-+.+.-..+-|
T Consensus 486 v-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG--------~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 486 I-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWG--------TRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred e-cccccCCccccchhhcCCCccceeecCCCCccCCCC--------CcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 8 789986421 00111111000010000 01232 23578899999999998888877544
No 26
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.91 E-value=1.4 Score=51.05 Aligned_cols=121 Identities=13% Similarity=0.125 Sum_probs=72.9
Q ss_pred HHHHHHHHHhCCCcEEEEEee-c---CCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCCh
Q 007610 181 ILRTISAMSANKLNVFHWHIT-D---SHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGH 256 (596)
Q Consensus 181 ik~~Id~ma~~KlN~lh~Hlt-D---dq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH 256 (596)
+.++||.+..+++|.+++=.. + +.+|.|....|=.+ ...|+ |.+|+|++|+-|.++||+||-.+ ++.|
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~--~~~~G-----t~~dlk~lV~~~H~~Gi~VilD~-V~NH 230 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAP--TSRFG-----TPDDFMYFVDACHQAGIGVILDW-VPGH 230 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccc--ccccC-----CHHHHHHHHHHHHHCCCEEEEEe-cccC
Confidence 345579999999999888321 1 12355544333111 11222 79999999999999999999988 6889
Q ss_pred hhhHHhhCCcchhccccCcCCC-----CCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007610 257 SGSWAGAHPEIVSCANKFWWPA-----GTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFP 318 (596)
Q Consensus 257 ~~a~~~~yp~l~~~~~~~~~~~-----~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~ 318 (596)
+..-......+... ..+...+ ...|+ ...+|..+|++.+|+.++++-.++-|.
T Consensus 231 ~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~w~--------~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 231 FPKDDHGLAEFDGT-PLYEHKDPRDGEHWDWG--------TLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cCCccchhhccCCC-cceeccCCccCcCCCCC--------CceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 86311110111000 0000000 01122 124788999999999999999887653
No 27
>PRK14705 glycogen branching enzyme; Provisional
Probab=91.42 E-value=1.5 Score=54.13 Aligned_cols=121 Identities=9% Similarity=0.056 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCCcEEEEEeec----CCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCCh
Q 007610 181 ILRTISAMSANKLNVFHWHITD----SHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGH 256 (596)
Q Consensus 181 ik~~Id~ma~~KlN~lh~HltD----dq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH 256 (596)
..++||.+..+++|.+++-..- +.+|-|....|=..+ ..|+ |.+|+|++|+.|.++||.||-.+ +|+|
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~--~ryG-----t~~dfk~lVd~~H~~GI~VILD~-V~nH 839 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT--SRFG-----HPDEFRFLVDSLHQAGIGVLLDW-VPAH 839 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC--cccC-----CHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 4567899999999988885431 234555544432221 2222 89999999999999999999888 7899
Q ss_pred hhhHHhhCCcchhccccCcCCC-----CCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007610 257 SGSWAGAHPEIVSCANKFWWPA-----GTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFP 318 (596)
Q Consensus 257 ~~a~~~~yp~l~~~~~~~~~~~-----~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~ 318 (596)
...-......+... ..+.-++ ..+|+. ..+|-.++++.+|+-+.+.-.++-|.
T Consensus 840 ~~~d~~~l~~fdg~-~~y~~~d~~~g~~~~Wg~--------~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 840 FPKDSWALAQFDGQ-PLYEHADPALGEHPDWGT--------LIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCcchhhhhhcCCC-cccccCCcccCCCCCCCC--------ceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 84311110111000 0000011 012322 24788999999999998888777653
No 28
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=91.15 E-value=8.5 Score=45.44 Aligned_cols=178 Identities=11% Similarity=0.136 Sum_probs=98.4
Q ss_pred CHHH-HHHHHHHHHhCCCcEEEEEeecC----CcccccCCCCccccccCCCCCCCCC-CHHHHHHHHHHHHhcCCEEEec
Q 007610 177 EVDD-ILRTISAMSANKLNVFHWHITDS----HSFPLLLPSDPNLAAKGSYGEDYLY-TPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 177 ~~~~-ik~~Id~ma~~KlN~lh~HltDd----q~frle~~~~P~Lt~~Ga~~~~~~Y-T~~di~eiv~yA~~rgI~VIPE 250 (596)
+... ..+.|+.+..+++|.+++-..-. .+|-|....|=.+ +..| |.+|+|++|+-|.++||+||-.
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~--------~~~~Gtp~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV--------SSRSGTPEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc--------ccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4344 46789999999999988754321 2344443333222 1222 7899999999999999999998
Q ss_pred cCCCChhhhHH-hhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC--C--------
Q 007610 251 IDTPGHSGSWA-GAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFP--E-------- 319 (596)
Q Consensus 251 ID~PGH~~a~~-~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~--~-------- 319 (596)
+ ++.|+..-. .....+......+.-.+...+. ..-....+|-.++++.+|+.+.++-.++-|. +
T Consensus 320 v-V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~----~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~s 394 (758)
T PLN02447 320 V-VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYH----WLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTS 394 (758)
T ss_pred e-ccccccccccccccccCCCCccccccCCCCCc----CcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhh
Confidence 8 789986411 1111110000011100000000 0011225788999999999999988887542 1
Q ss_pred -CceecCCCCcCccccCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCcEEEecc
Q 007610 320 -NFFHSGGDEILPACWKSDSLIQSFLSTGG--TLSEVLEKFINFVFPFIVALDKTAIYWED 377 (596)
Q Consensus 320 -~~iHiGgDEv~~~~w~~~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~i~W~d 377 (596)
-|.|-|...-+...+.. + -.+ +... ..|+..+.+.+++.....+.=.|
T Consensus 395 mlY~~hg~~~~f~~~~~~------~--~g~~~d~~a--~~fL~~~N~~i~~~~p~~~~IAE 445 (758)
T PLN02447 395 MLYHHHGLQMAFTGNYNE------Y--FGMATDVDA--VVYLMLANDLLHGLYPEAVTIAE 445 (758)
T ss_pred hhccccCcccccccCccc------c--cCCccChHH--HHHHHHHHHHHHHhCCCeEEEEE
Confidence 25565544322222211 0 011 2221 46777778888776554444444
No 29
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.60 E-value=2.4 Score=49.28 Aligned_cols=125 Identities=12% Similarity=0.085 Sum_probs=74.4
Q ss_pred CCC-HHHHHHHHHHHHhCCCcEEEEEeecC----CcccccCCCCccccccCCCCCCCCC-CHHHHHHHHHHHHhcCCEEE
Q 007610 175 YYE-VDDILRTISAMSANKLNVFHWHITDS----HSFPLLLPSDPNLAAKGSYGEDYLY-TPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 175 f~~-~~~ik~~Id~ma~~KlN~lh~HltDd----q~frle~~~~P~Lt~~Ga~~~~~~Y-T~~di~eiv~yA~~rgI~VI 248 (596)
|.+ .+.+.++|+.+...++|.+++=..-. .+|.+....| |.++..| |.+|+|++|+-|.++||.||
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~--------~~~~~~~g~~~~~~~lv~~~H~~gi~Vi 234 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGY--------YAPTSRLGTPEDFKYLVNHLHGLGIGVI 234 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccc--------cccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 445 33445667889999999887743311 1343333222 2222233 89999999999999999999
Q ss_pred eccCCCChhhhHHhhCCcchhccccCcCCCC-----CccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 007610 249 PEIDTPGHSGSWAGAHPEIVSCANKFWWPAG-----TKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIF 317 (596)
Q Consensus 249 PEID~PGH~~a~~~~yp~l~~~~~~~~~~~~-----~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF 317 (596)
..+ ++.|+..-......+.... .+...++ .+|+. ..+|..++++.+|+.+.+.-.++-|
T Consensus 235 lD~-v~nH~~~~~~~l~~~dg~~-~y~~~~~~~g~~~~w~~--------~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 235 LDW-VPGHFPTDESGLAHFDGGP-LYEYADPRKGYHYDWNT--------YIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred EEe-cccccCcchhhhhccCCCc-ceeccCCcCCcCCCCCC--------cccCCCCHHHHHHHHHHHHHHHHHh
Confidence 998 6899754211100110000 0000000 12321 2478899999999999888877644
No 30
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.93 E-value=3.9 Score=48.02 Aligned_cols=126 Identities=9% Similarity=0.047 Sum_probs=76.1
Q ss_pred CCCHHHH-HHHHHHHHhCCCcEEEEEeecC----CcccccCCCCccccccCCCCCCC-CCCHHHHHHHHHHHHhcCCEEE
Q 007610 175 YYEVDDI-LRTISAMSANKLNVFHWHITDS----HSFPLLLPSDPNLAAKGSYGEDY-LYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 175 f~~~~~i-k~~Id~ma~~KlN~lh~HltDd----q~frle~~~~P~Lt~~Ga~~~~~-~YT~~di~eiv~yA~~rgI~VI 248 (596)
+.+...+ .++|+.+..+++|.+++-..-. .+|.|.... -|.++. +=|.+|+|++|+.|.++||.||
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~--------~~a~~~~~G~~~dfk~lV~~~H~~Gi~VI 336 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLG--------LYAPTARHGSPDGFAQFVDACHRAGIGVI 336 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCc--------CCccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 4443444 4568999999999888754311 234443322 222222 2279999999999999999999
Q ss_pred eccCCCChhhhHHhhCCcchhccccCcCCCC-----CccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007610 249 PEIDTPGHSGSWAGAHPEIVSCANKFWWPAG-----TKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFP 318 (596)
Q Consensus 249 PEID~PGH~~a~~~~yp~l~~~~~~~~~~~~-----~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~ 318 (596)
-.+ +|.|+..-......+... ..+.-+++ .+|+. -.+|-.+|++.+|+-+.+.-.++-|.
T Consensus 337 lD~-V~nH~~~d~~~l~~fdg~-~~Ye~~d~~~g~~~~W~~--------~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 337 LDW-VSAHFPDDAHGLAQFDGA-ALYEHADPREGMHRDWNT--------LIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred EEe-ccccCCccccccccCCCc-cccccCCCcCCccCCCCC--------eecccCCHHHHHHHHHHHHHHHHHhC
Confidence 998 689986522111111000 00000000 12221 14688999999999988888776553
No 31
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=88.50 E-value=3.4 Score=48.44 Aligned_cols=126 Identities=11% Similarity=0.148 Sum_probs=70.7
Q ss_pred HHHHHHhCCCcEEEEEeecC----C---------cccccCCCCccccccCCCCCCCCC----CHHHHHHHHHHHHhcCCE
Q 007610 184 TISAMSANKLNVFHWHITDS----H---------SFPLLLPSDPNLAAKGSYGEDYLY----TPSDVKKIIEYGLDYGVR 246 (596)
Q Consensus 184 ~Id~ma~~KlN~lh~HltDd----q---------~frle~~~~P~Lt~~Ga~~~~~~Y----T~~di~eiv~yA~~rgI~ 246 (596)
.||.+..+++|.+++=..=+ + .|.|....| |.++..| +.+|+|++|+-|.++||+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y--------~a~d~~y~~~g~~~efk~LV~~~H~~GI~ 260 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF--------FAPEPRYLASGQVAEFKTMVRALHDAGIE 260 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc--------cccChhhcCCCCHHHHHHHHHHHHHCCCE
Confidence 47899999999888733210 0 122211111 1233445 689999999999999999
Q ss_pred EEeccCCCChhhhHHhhCCcchh--ccc-cCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007610 247 VVPEIDTPGHSGSWAGAHPEIVS--CAN-KFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFP 318 (596)
Q Consensus 247 VIPEID~PGH~~a~~~~yp~l~~--~~~-~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~ 318 (596)
||-.+ ++.|+..-....|.+.. ..+ .++.-.....+.......+.+.||..+|.+.++|.+.+.-.++-|.
T Consensus 261 VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~g 334 (688)
T TIGR02100 261 VILDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMH 334 (688)
T ss_pred EEEEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 99998 67898643211121100 000 0000000000000001112346899999999999998888776443
No 32
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=88.32 E-value=0.57 Score=47.98 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEee---cCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCC
Q 007610 178 VDDILRTISAMSANKLNVFHWHIT---DSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTP 254 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~Hlt---Ddq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~P 254 (596)
..-|.+-||.++..++|.+++-.. ....|.|....|=.+. ..+=|.+|+++||+-|.+|||+||-.+ ++
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd-------~~~Gt~~d~~~Lv~~~h~~gi~VilD~-V~ 74 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVD-------PRFGTMEDFKELVDAAHKRGIKVILDV-VP 74 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEES-------TTTBHHHHHHHHHHHHHHTTCEEEEEE-ET
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccc-------cccchhhhhhhhhhccccccceEEEee-ec
Confidence 355777789999999999887321 1112222222211110 011289999999999999999999888 57
Q ss_pred Chhhh
Q 007610 255 GHSGS 259 (596)
Q Consensus 255 GH~~a 259 (596)
.|+..
T Consensus 75 NH~~~ 79 (316)
T PF00128_consen 75 NHTSD 79 (316)
T ss_dssp SEEET
T ss_pred ccccc
Confidence 78854
No 33
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=88.19 E-value=1.5 Score=49.82 Aligned_cols=75 Identities=5% Similarity=0.121 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEee---cCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCC
Q 007610 177 EVDDILRTISAMSANKLNVFHWHIT---DSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDT 253 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~Hlt---Ddq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~ 253 (596)
.+.-|.+-+|.++.+++|.+++-.. ......|.+..|=.+. ..+=|.+|+++||+.|+++||+||-.+ +
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id-------~~~Gt~~~~~~lv~~ah~~gi~vilD~-v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAIN-------PLFGTMADFEELVSEAKKRNIKIMLDM-V 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccC-------cccCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 5677888889999999998887322 1111112111111110 012289999999999999999999988 7
Q ss_pred CChhhh
Q 007610 254 PGHSGS 259 (596)
Q Consensus 254 PGH~~a 259 (596)
|-|+..
T Consensus 97 ~NH~~~ 102 (543)
T TIGR02403 97 FNHTST 102 (543)
T ss_pred cccccc
Confidence 889864
No 34
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=87.84 E-value=6.1 Score=45.10 Aligned_cols=75 Identities=7% Similarity=0.130 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEee---cCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCC
Q 007610 177 EVDDILRTISAMSANKLNVFHWHIT---DSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDT 253 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~Hlt---Ddq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~ 253 (596)
.+.-|.+-||.++..++|.+++=.. ....+.|.+..|=.+. ..+=|.+|+++||+-|.++||+||-.+ +
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id-------~~~Gt~~d~~~lv~~~h~~gi~vilD~-V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAID-------PTYGTLDDFDELVAQAKSRGIRIILDM-V 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcC-------cccCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 4677778889999999999887322 1111222222211110 012289999999999999999999998 7
Q ss_pred CChhhh
Q 007610 254 PGHSGS 259 (596)
Q Consensus 254 PGH~~a 259 (596)
+.|+..
T Consensus 103 ~NH~s~ 108 (551)
T PRK10933 103 FNHTST 108 (551)
T ss_pred CCCccC
Confidence 889865
No 35
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.72 E-value=1.6 Score=51.56 Aligned_cols=126 Identities=11% Similarity=0.075 Sum_probs=75.0
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEeec----CCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 175 YYEVDDIL-RTISAMSANKLNVFHWHITD----SHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 175 f~~~~~ik-~~Id~ma~~KlN~lh~HltD----dq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
+-+...|. ++||.+..+++|.+++=..- +.+|.|....|=.+. . .+=|.+|+|++|+-|.++||+||-
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~--~-----~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT--S-----RFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC--c-----ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 33444444 55799999999999884431 123544443331111 1 233899999999999999999999
Q ss_pred ccCCCChhhhHHhhCCcchhccccCcCCC-----CCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 007610 250 EIDTPGHSGSWAGAHPEIVSCANKFWWPA-----GTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIF 317 (596)
Q Consensus 250 EID~PGH~~a~~~~yp~l~~~~~~~~~~~-----~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF 317 (596)
.+ +|.|+..-......+.. ...+.-++ -..|+ ...+|-.+|++.+++.+.+.-.++-|
T Consensus 334 D~-V~NH~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~w~--------~~~~n~~~~~v~~~l~~~~~~W~~e~ 396 (726)
T PRK05402 334 DW-VPAHFPKDAHGLARFDG-TALYEHADPREGEHPDWG--------TLIFNYGRNEVRNFLVANALYWLEEF 396 (726)
T ss_pred EE-CCCCCCCCccchhccCC-CcceeccCCcCCccCCCC--------CccccCCCHHHHHHHHHHHHHHHHHh
Confidence 88 58998531100000000 00000000 01122 12478899999999999888877654
No 36
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.68 E-value=1.3 Score=47.79 Aligned_cols=124 Identities=14% Similarity=0.177 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCccc-ccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCC
Q 007610 176 YEVDDILRTISAMSANKLNVFHWHITDSHSFP-LLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTP 254 (596)
Q Consensus 176 ~~~~~ik~~Id~ma~~KlN~lh~HltDdq~fr-le~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~P 254 (596)
.|.+.+++-|+.|...++|++.++.. +|. +| |+ . +.|.=+.+..+++.|+++||.||.-+-+.
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lE----P~---e------G~ydF~~lD~~l~~a~~~Gi~viL~~~~~ 70 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLE----PE---E------GQYDFSWLDRVLDLAAKHGIKVILGTPTA 70 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-----SB---T------TB---HHHHHHHHHHHCTT-EEEEEECTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEe---chhhcc----CC---C------CeeecHHHHHHHHHHHhccCeEEEEeccc
Confidence 45689999999999999999998642 242 22 21 2 45778889999999999999999755432
Q ss_pred ChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC-C---ceecC
Q 007610 255 GHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPE-N---FFHSG 325 (596)
Q Consensus 255 GH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~-~---~iHiG 325 (596)
..=..+.+.||+...-.. ++.. . ........|+.+|...+.+..+++.+.+-+.+ + -+||+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~-----~g~~----~-~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~ 135 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDA-----DGRR----R-GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID 135 (374)
T ss_dssp TS-HHHHCCSGCCC-B-T-----TTSB----E-ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC
T ss_pred ccccchhhhcccccccCC-----CCCc----C-ccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec
Confidence 222334457888743110 1100 0 01112357899999999999999999887764 2 35663
No 37
>PRK03705 glycogen debranching enzyme; Provisional
Probab=86.29 E-value=3.8 Score=47.73 Aligned_cols=126 Identities=16% Similarity=0.238 Sum_probs=71.3
Q ss_pred HHHHHHhCCCcEEEEEeecCCcccccCCCCccccccC-----------CCCCCCCCC------HHHHHHHHHHHHhcCCE
Q 007610 184 TISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKG-----------SYGEDYLYT------PSDVKKIIEYGLDYGVR 246 (596)
Q Consensus 184 ~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~G-----------a~~~~~~YT------~~di~eiv~yA~~rgI~ 246 (596)
.||.+..+++|.+++=..-+ ..+.+++...| -|.++..|. .+|+|++|+-|.++||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~------~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~ 257 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQ------FASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIE 257 (658)
T ss_pred chHHHHHcCCCEEEecCccc------CCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCE
Confidence 48899999999888843211 11111111111 012333443 37999999999999999
Q ss_pred EEeccCCCChhhhHHhhCCcch--hcc-ccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007610 247 VVPEIDTPGHSGSWAGAHPEIV--SCA-NKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFP 318 (596)
Q Consensus 247 VIPEID~PGH~~a~~~~yp~l~--~~~-~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~ 318 (596)
||-.+ ++.|+.......|.+. ... ..+++-+.. +.......+...||..+|.+.+++.+.++-.++-|.
T Consensus 258 VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~--g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 258 VILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIRED--GDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred EEEEE-cccCccCcCCCCcchhcccCCCccceEECCC--CCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 99988 6789864221122110 000 011110000 000000112246889999999999999998887654
No 38
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=86.02 E-value=4.2 Score=46.81 Aligned_cols=133 Identities=12% Similarity=0.151 Sum_probs=78.4
Q ss_pred ceecCCCC--CCC-HHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccc-----cCCCCCCCCC-CHHHHHHHH
Q 007610 167 LLLDTSRN--YYE-VDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAA-----KGSYGEDYLY-TPSDVKKII 237 (596)
Q Consensus 167 ~mlD~aR~--f~~-~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~-----~Ga~~~~~~Y-T~~di~eiv 237 (596)
+|+-+-+. +.+ .+...++|+.++..++|.+.+= .+..+|-=.+ .|-|.+...| |.+|+|.+|
T Consensus 150 lHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELM---------Pv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 150 LHVGSFTPDRFLGYFELAIELLPYLKELGITHIELM---------PVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred EEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEc---------ccccCCCCCCCCCCcceeccccccCCCHHHHHHHH
Confidence 45555444 333 5667789999999999977773 3333432111 1223343344 899999999
Q ss_pred HHHHhcCCEEEeccCCCChhhhHHhhCCcchh--ccc--cCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHH
Q 007610 238 EYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVS--CAN--KFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENV 313 (596)
Q Consensus 238 ~yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~--~~~--~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev 313 (596)
+.|.++||.||-.. +|||...-......+.. +.. ..+-.-.++|+. ...|-..+++..|+-+-.---
T Consensus 221 D~aH~~GIgViLD~-V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~--------~i~~~gr~EVR~Fll~nal~W 291 (628)
T COG0296 221 DAAHQAGIGVILDW-VPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGT--------AIFNYGRNEVRNFLLANALYW 291 (628)
T ss_pred HHHHHcCCEEEEEe-cCCcCCCCcchhhhcCCccccccCCcccccCCCccc--------chhccCcHHHHHHHHHHHHHH
Confidence 99999999999887 89998752211111100 000 000001234443 234555899999887665555
Q ss_pred HHhC
Q 007610 314 ASIF 317 (596)
Q Consensus 314 ~~lF 317 (596)
++-|
T Consensus 292 l~~y 295 (628)
T COG0296 292 LEEY 295 (628)
T ss_pred HHHh
Confidence 5544
No 39
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=85.33 E-value=10 Score=46.68 Aligned_cols=129 Identities=15% Similarity=0.202 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCC----------------------cccccCCCCccccccCCCCCC---CCCCHHH
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDSH----------------------SFPLLLPSDPNLAAKGSYGED---YLYTPSD 232 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDdq----------------------~frle~~~~P~Lt~~Ga~~~~---~~YT~~d 232 (596)
..-|.+-||.+..+++|.+||-..=+. .|.|....| .+..+.|+.+ +.-+.+|
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~y--fape~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNY--FALSGMYSEDPKDPELRIAE 556 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcC--cccccccccCCcCccccHHH
Confidence 445555689999999999888554110 133322222 1112233221 1223589
Q ss_pred HHHHHHHHHhcCCEEEeccCCCChhhhHH---hhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHH
Q 007610 233 VKKIIEYGLDYGVRVVPEIDTPGHSGSWA---GAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINV 309 (596)
Q Consensus 233 i~eiv~yA~~rgI~VIPEID~PGH~~a~~---~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v 309 (596)
+|++|+-|.++||+||-.+ ++.|+.... ...|..-...+ .++. .....+.+.++..++.+.+||.+.
T Consensus 557 fK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~----~~G~-----~~~~~~g~~l~~e~~~vrk~iiDs 626 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMD----ADGT-----PRTSFGGGRLGTTHEMSRRILVDS 626 (1111)
T ss_pred HHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeC----CCCC-----cccccCCCCCCcCCHHHHHHHHHH
Confidence 9999999999999999988 789986421 11121100000 0110 001122356777888888888888
Q ss_pred HHHHHHhCC
Q 007610 310 LENVASIFP 318 (596)
Q Consensus 310 ~~Ev~~lF~ 318 (596)
+.-.++-|.
T Consensus 627 l~yWv~ey~ 635 (1111)
T TIGR02102 627 IKYLVDEFK 635 (1111)
T ss_pred HHHHHHhcC
Confidence 877776543
No 40
>PLN02784 alpha-amylase
Probab=83.70 E-value=14 Score=44.15 Aligned_cols=87 Identities=10% Similarity=0.102 Sum_probs=56.6
Q ss_pred ccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecC--CcccccCCCCccccccCCCCCCC-CCCHHHHHHHHHHHH
Q 007610 165 RGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDS--HSFPLLLPSDPNLAAKGSYGEDY-LYTPSDVKKIIEYGL 241 (596)
Q Consensus 165 RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd--q~frle~~~~P~Lt~~Ga~~~~~-~YT~~di~eiv~yA~ 241 (596)
.||.-|+-..----..|++-++.++.+++|.+.+-..=. ..+.|....| |..+. +=|++|++++|+-|+
T Consensus 507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~--------y~lds~yGT~~ELk~LI~a~H 578 (894)
T PLN02784 507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDL--------YNLNSRYGTIDELKDLVKSFH 578 (894)
T ss_pred EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccc--------cccCcCcCCHHHHHHHHHHHH
Confidence 455556544311157788889999999999988854210 0011111111 11111 238999999999999
Q ss_pred hcCCEEEeccCCCChhhhH
Q 007610 242 DYGVRVVPEIDTPGHSGSW 260 (596)
Q Consensus 242 ~rgI~VIPEID~PGH~~a~ 260 (596)
++||.||-.| ++.|+...
T Consensus 579 ~~GIkVIlDi-ViNH~ag~ 596 (894)
T PLN02784 579 EVGIKVLGDA-VLNHRCAH 596 (894)
T ss_pred HCCCEEEEEE-Cccccccc
Confidence 9999999998 78898653
No 41
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=82.74 E-value=5.4 Score=43.59 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCC-CCCCHHHHHHHHHHHHhcCCEE----Eec
Q 007610 176 YEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGED-YLYTPSDVKKIIEYGLDYGVRV----VPE 250 (596)
Q Consensus 176 ~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~-~~YT~~di~eiv~yA~~rgI~V----IPE 250 (596)
++-+.|++++|.++.++++.|.+ || ||=-. .....+..|-|.++ ..+ +.-++.|+++.+++|+.. -||
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fvi---DD-GW~~~--r~~d~~~~GdW~~~~~kF-P~Gl~~l~~~i~~~Gmk~GlW~ePe 127 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVI---DD-GWFGG--RDDDNAGLGDWEPDPKKF-PNGLKPLADYIHSLGMKFGLWFEPE 127 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE----S-SSBCT--ESTTTSTTSBECBBTTTS-TTHHHHHHHHHHHTT-EEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCEEEEE---cC-ccccc--cCCCcccCCceeEChhhh-CCcHHHHHHHHHHCCCeEEEEeccc
Confidence 46899999999999999999887 44 66321 11122334555433 233 245999999999999874 455
Q ss_pred cCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCce
Q 007610 251 IDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFF 322 (596)
Q Consensus 251 ID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~i 322 (596)
+=.|+ ..+.+.||+........ ... .......||+++|++.+++.+.+..+..-..-.||
T Consensus 128 ~v~~~--S~l~~~hPdw~l~~~~~-----~~~-----~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYi 187 (394)
T PF02065_consen 128 MVSPD--SDLYREHPDWVLRDPGR-----PPT-----LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYI 187 (394)
T ss_dssp EEESS--SCHCCSSBGGBTCCTTS-----E-E-----CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEE
T ss_pred cccch--hHHHHhCccceeecCCC-----CCc-----CcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 43232 23455677764321110 000 00111359999999999999999998765554444
No 42
>PRK10785 maltodextrin glucosidase; Provisional
Probab=82.68 E-value=4.2 Score=46.89 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=54.2
Q ss_pred CCCCC--HHHHHHHHHHHHhCCCcEEEEEeecC--CcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007610 173 RNYYE--VDDILRTISAMSANKLNVFHWHITDS--HSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 173 R~f~~--~~~ik~~Id~ma~~KlN~lh~HltDd--q~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VI 248 (596)
+.|+. ++-|.+-||.++.+++|.+++-..=. ..++|....|=.+. ..+=|.+|+++||+-|.+|||+||
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iD-------p~~Gt~~df~~Lv~~aH~rGikVi 243 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVD-------PQLGGDAALLRLRHATQQRGMRLV 243 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccC-------cccCCHHHHHHHHHHHHHCCCEEE
Confidence 45655 88899999999999999998843210 01222222211111 012278999999999999999999
Q ss_pred eccCCCChhhh
Q 007610 249 PEIDTPGHSGS 259 (596)
Q Consensus 249 PEID~PGH~~a 259 (596)
-.+ ++.|++.
T Consensus 244 lD~-V~NH~~~ 253 (598)
T PRK10785 244 LDG-VFNHTGD 253 (598)
T ss_pred EEE-CCCcCCC
Confidence 988 6789875
No 43
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=82.51 E-value=7.9 Score=44.72 Aligned_cols=128 Identities=9% Similarity=0.031 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecC------------CcccccCCCCccccccCCCCCC---CCCCHHHHHHHHHHHHhc
Q 007610 179 DDILRTISAMSANKLNVFHWHITDS------------HSFPLLLPSDPNLAAKGSYGED---YLYTPSDVKKIIEYGLDY 243 (596)
Q Consensus 179 ~~ik~~Id~ma~~KlN~lh~HltDd------------q~frle~~~~P~Lt~~Ga~~~~---~~YT~~di~eiv~yA~~r 243 (596)
.-+.+.||.+..+++|.+++=..=+ ..|.|....| .+..++|+.+ +.-+.+|+|++|+-|.++
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y--~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~ 241 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNY--NVPEGSYSTNPYDPATRIRELKQMIQALHEN 241 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccC--CCcChhhhcCCCccchHHHHHHHHHHHHHHC
Confidence 4556778999999999998833211 1244433222 1111222211 111258999999999999
Q ss_pred CCEEEeccCCCChhhhH-----HhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 007610 244 GVRVVPEIDTPGHSGSW-----AGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIF 317 (596)
Q Consensus 244 gI~VIPEID~PGH~~a~-----~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF 317 (596)
||+||-.+ ++.|+... ....|+.- +..+ .++.......+.+.++-.+|++.+++.+.+.-.++-|
T Consensus 242 Gi~VilDv-V~NH~~~~~~~~f~~~~~~~~------~~~~--~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~ 311 (605)
T TIGR02104 242 GIRVIMDV-VYNHTYSREESPFEKTVPGYY------YRYN--EDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEY 311 (605)
T ss_pred CCEEEEEE-EcCCccCCCCCcccCCCCCee------EEEC--CCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 99999998 68898531 11112110 0000 0010000011123567778999999988887766543
No 44
>PLN02361 alpha-amylase
Probab=82.19 E-value=19 Score=39.51 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeec-CCc-ccccCCCCccccccCCCCCCC-CCCHHHHHHHHHHHHhcCCEEEeccCCCC
Q 007610 179 DDILRTISAMSANKLNVFHWHITD-SHS-FPLLLPSDPNLAAKGSYGEDY-LYTPSDVKKIIEYGLDYGVRVVPEIDTPG 255 (596)
Q Consensus 179 ~~ik~~Id~ma~~KlN~lh~HltD-dq~-frle~~~~P~Lt~~Ga~~~~~-~YT~~di~eiv~yA~~rgI~VIPEID~PG 255 (596)
..|++-++.++..+++.+.+=..- ..+ ..|.... -|..+. +=|++|++++|+-|+++||+||-.+ ++-
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d--------~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~-V~N 99 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQN--------LYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI-VIN 99 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCccc--------ccccCcccCCHHHHHHHHHHHHHcCCEEEEEE-ccc
Confidence 667788899999999988874311 000 0011100 011111 2289999999999999999999988 678
Q ss_pred hhh
Q 007610 256 HSG 258 (596)
Q Consensus 256 H~~ 258 (596)
|+.
T Consensus 100 H~~ 102 (401)
T PLN02361 100 HRV 102 (401)
T ss_pred ccc
Confidence 874
No 45
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=81.06 E-value=5.4 Score=47.68 Aligned_cols=76 Identities=9% Similarity=0.131 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEee----cCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 176 YEVDDILRTISAMSANKLNVFHWHIT----DSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 176 ~~~~~ik~~Id~ma~~KlN~lh~Hlt----Ddq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
++.+.+.+.++.++.+++|.+.+-.. ....+.|.+..|-.+.. ..=|.++++++++-|+++||.||-.|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp-------~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINP-------ELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCC-------CCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 67888999999999999998877432 11223333333322211 11178999999999999999999998
Q ss_pred CCCChhhh
Q 007610 252 DTPGHSGS 259 (596)
Q Consensus 252 D~PGH~~a 259 (596)
+|.|++.
T Consensus 90 -V~NH~~~ 96 (879)
T PRK14511 90 -VPNHMAV 96 (879)
T ss_pred -ccccccC
Confidence 7888864
No 46
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=80.29 E-value=12 Score=46.89 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=69.8
Q ss_pred HHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccC-----CC------CCCCCC---CHHHHHHHHHHHHhcCCEEE
Q 007610 183 RTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKG-----SY------GEDYLY---TPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 183 ~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~G-----a~------~~~~~Y---T~~di~eiv~yA~~rgI~VI 248 (596)
+.|+.+..+++|.+++=..- +..+...+...| .| .++..| |.+|+|++|+-|.++||+||
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~------~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VI 264 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIF------ASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVI 264 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCcc------ccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEE
Confidence 55778899999988873321 111111111111 02 233445 79999999999999999999
Q ss_pred eccCCCChhhhHHhhCCcchhc--c-ccCcCCCCCccccccccC-CCCCcCCCCChhHHHHHHHHHHHHHH
Q 007610 249 PEIDTPGHSGSWAGAHPEIVSC--A-NKFWWPAGTKWEDRLASE-PGTGQLNPLHPKTFGVMINVLENVAS 315 (596)
Q Consensus 249 PEID~PGH~~a~~~~yp~l~~~--~-~~~~~~~~~~w~~~~~~~-~~~~~L~p~~~~t~~f~~~v~~Ev~~ 315 (596)
-.+ ++.|+..-...-|.+... . ..++..++. ....+... .+.+.+|..+|.+.+++.+.++-..+
T Consensus 265 LDv-V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~-~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 265 LDV-VFNHTGESNHYGPTLSAYGSDNSPYYRLEPG-NPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred EEE-ccccccCCCCCCCcccccCCCCCCceEecCC-CCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 988 788986432211222110 0 001100000 00000011 12235777899999999998888777
No 47
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=80.24 E-value=5.2 Score=45.50 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecC---CcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCC
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDS---HSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDT 253 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDd---q~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~ 253 (596)
.+.-|.+-||.++.+++|.+++=..=. .++.|....|=.+.. .+=|.+|+++||+-|.+|||+||-.+ +
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~-------~~Gt~~df~~Lv~~ah~~Gi~vilD~-V 97 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILP-------EFGTIDDFKDFVDEAHARGMRVIIDL-V 97 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccCh-------hhCCHHHHHHHHHHHHHCCCEEEEEe-c
Confidence 477788889999999999888733210 012222211111110 11178999999999999999999988 7
Q ss_pred CChhhh
Q 007610 254 PGHSGS 259 (596)
Q Consensus 254 PGH~~a 259 (596)
+.|++.
T Consensus 98 ~NH~s~ 103 (539)
T TIGR02456 98 LNHTSD 103 (539)
T ss_pred cCcCCC
Confidence 899854
No 48
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=79.04 E-value=6.9 Score=46.50 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEee----cCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 007610 175 YYEVDDILRTISAMSANKLNVFHWHIT----DSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 175 f~~~~~ik~~Id~ma~~KlN~lh~Hlt----Ddq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPE 250 (596)
=++.+.+.+.|+.++..++|.+++=.. +...+.|.+..|-.+.. .+=|.+|++++++-|+++||.||-.
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp-------~lGt~edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINP-------ELGGEEGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCC-------CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 357788999999999999997766321 11123333322211111 1127999999999999999999998
Q ss_pred cCCCChhhh
Q 007610 251 IDTPGHSGS 259 (596)
Q Consensus 251 ID~PGH~~a 259 (596)
| +|.|++.
T Consensus 85 i-VpNH~a~ 92 (825)
T TIGR02401 85 I-VPNHMAV 92 (825)
T ss_pred e-ccccccc
Confidence 8 7999864
No 49
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=78.70 E-value=7.9 Score=43.34 Aligned_cols=80 Identities=10% Similarity=0.126 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEee-cCC----cccccCCCCccccc---cCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 178 VDDILRTISAMSANKLNVFHWHIT-DSH----SFPLLLPSDPNLAA---KGSYGEDYLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~Hlt-Ddq----~frle~~~~P~Lt~---~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
-..|.+-||.++.+++|.+.+=.. .+. .+.|....|=.|.+ +|+- ...+=|.+|+++||+-|.+|||+||-
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~i-d~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTV-RTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCc-CcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 355777789999999999877321 111 12222211111100 0000 00112899999999999999999999
Q ss_pred ccCCCChhhh
Q 007610 250 EIDTPGHSGS 259 (596)
Q Consensus 250 EID~PGH~~a 259 (596)
.+ ++.|++.
T Consensus 100 D~-V~NH~~~ 108 (479)
T PRK09441 100 DV-VLNHKAG 108 (479)
T ss_pred EE-CcccccC
Confidence 98 7899873
No 50
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=76.36 E-value=8 Score=42.18 Aligned_cols=106 Identities=14% Similarity=0.342 Sum_probs=60.6
Q ss_pred ceEEEEecCCCeEEEEecChhhhhHHHHHHHHhhc-CCCeeeeeceEEeccCCcc-ccc---------ceec--CC-CCC
Q 007610 110 SYSLTITSDENTAYLVASTVWGAMRGLETFSQLVW-GNPSCVAVGIYVWDEPLFS-HRG---------LLLD--TS-RNY 175 (596)
Q Consensus 110 ~Y~L~i~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~-~~~~~ip~~~~I~D~P~f~-~RG---------~mlD--~a-R~f 175 (596)
-|.+.++++ +.|.|++.+..|++.++++| +. |+.+.+| .|.|+ |++ +.+. .. .+|
T Consensus 81 ~~~~~~~~~-~eiivt~Ga~~al~~~~~a~---~~pGDeVlip-------~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f 149 (393)
T COG0436 81 RYGLDVDPE-EEIIVTAGAKEALFLAFLAL---LNPGDEVLIP-------DPGYPSYEAAVKLAGGKPVPVPLDEEENGF 149 (393)
T ss_pred HhCCCCCCC-CeEEEeCCHHHHHHHHHHHh---cCCCCEEEEe-------CCCCcCHHHHHHhcCCEEEEEeCCcCccCC
Confidence 344666642 34999988888888766554 33 3333333 23332 111 1222 11 244
Q ss_pred CC-HHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 176 YE-VDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 176 ~~-~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
.+ ++.|.+.|.. .-| .+.+ -.|.-| .| ..||++++++|+++|++++|-||-
T Consensus 150 ~~d~~~l~~~i~~--ktk--~i~l----------n~P~NP----TG-----av~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 150 KPDLEDLEAAITP--KTK--AIIL----------NSPNNP----TG-----AVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred cCCHHHHHhhcCc--cce--EEEE----------eCCCCC----cC-----cCCCHHHHHHHHHHHHHcCeEEEE
Confidence 33 5666655554 222 2221 234443 34 379999999999999999999986
No 51
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=76.24 E-value=6.1 Score=45.77 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeecCC-----cccccCCCCccccccCCCCCCCCCCHH------HHHHHHHHHHhcCCEEE
Q 007610 180 DILRTISAMSANKLNVFHWHITDSH-----SFPLLLPSDPNLAAKGSYGEDYLYTPS------DVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 180 ~ik~~Id~ma~~KlN~lh~HltDdq-----~frle~~~~P~Lt~~Ga~~~~~~YT~~------di~eiv~yA~~rgI~VI 248 (596)
+..+.|..+..+++|.+||-.+=.. +|.|....+ .+..+.|+ |.+ |+|++|+-|..+||+|+
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nF--FapssrYg-----t~~s~~ri~efK~lVd~aHs~GI~Vl 328 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNF--FAPSSRYG-----TPESPCRINEFKELVDKAHSLGIEVL 328 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEe--eccccccc-----CCCcccchHHHHHHHHHHhhCCcEEe
Confidence 3456677888889999998554332 444443332 22223333 555 99999999999999999
Q ss_pred eccCCCChhhhHHhhCCcch--hccccCcCCCCCcccccccc-CCCCCcCCCCChhHHHHHHHHHHHHHH
Q 007610 249 PEIDTPGHSGSWAGAHPEIV--SCANKFWWPAGTKWEDRLAS-EPGTGQLNPLHPKTFGVMINVLENVAS 315 (596)
Q Consensus 249 PEID~PGH~~a~~~~yp~l~--~~~~~~~~~~~~~w~~~~~~-~~~~~~L~p~~~~t~~f~~~v~~Ev~~ 315 (596)
-+| +-.|+.. ....|.-+ .-.+..|...+. +... --+...+|-..+++.+||-+=++=-..
T Consensus 329 LDV-V~sHaa~-n~~d~l~~fdGid~~~Yf~~~~----r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVt 392 (757)
T KOG0470|consen 329 LDV-VHSHAAK-NSKDGLNMFDGIDNSVYFHSGP----RGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVT 392 (757)
T ss_pred hhh-hhhhccc-CcCCcchhccCcCCceEEEeCC----cccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 998 6677765 22222211 111111111100 0101 113356888999999998766555443
No 52
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=75.88 E-value=24 Score=36.97 Aligned_cols=138 Identities=18% Similarity=0.256 Sum_probs=76.3
Q ss_pred CCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCC-CCCCCCHHHHHHHHH
Q 007610 160 PLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYG-EDYLYTPSDVKKIIE 238 (596)
Q Consensus 160 P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~-~~~~YT~~di~eiv~ 238 (596)
|++.+ |++.--- .+.+-+.++++++.+...++.+=.+.+-++ |- ..+- -|.|. +...+. |.+++++
T Consensus 7 P~wa~-G~~~~~~-~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~--w~---~~~~----~~~f~~d~~~FP--d~~~~i~ 73 (308)
T cd06593 7 PAWSF-GLWLSRS-FYYDEEEVNEFADGMRERNLPCDVIHLDCF--WM---KEFQ----WCDFEFDPDRFP--DPEGMLS 73 (308)
T ss_pred chHHH-HHHHHcc-cCCCHHHHHHHHHHHHHcCCCeeEEEEecc--cc---cCCc----ceeeEECcccCC--CHHHHHH
Confidence 45555 6654332 457899999999999999988776666543 21 0000 00111 001222 4789999
Q ss_pred HHHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcC--CCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHH
Q 007610 239 YGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWW--PAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVAS 315 (596)
Q Consensus 239 yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~--~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~ 315 (596)
..+++|++|+.-++ |. ...-...|.+... ..+.+ ++++.... ..-......+|.+||++.++..+.++++.+
T Consensus 74 ~l~~~G~~~~~~~~-P~-i~~~~~~~~e~~~--~g~~v~~~~g~~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 74 RLKEKGFKVCLWIN-PY-IAQKSPLFKEAAE--KGYLVKKPDGSVWQW-DLWQPGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred HHHHCCCeEEEEec-CC-CCCCchhHHHHHH--CCeEEECCCCCeeee-cccCCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999775 42 1100001111100 00000 01111000 000122357999999999999999998776
No 53
>PLN02877 alpha-amylase/limit dextrinase
Probab=75.54 E-value=38 Score=41.17 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCEEEeccCCCChhhh
Q 007610 230 PSDVKKIIEYGLDYGVRVVPEIDTPGHSGS 259 (596)
Q Consensus 230 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a 259 (596)
..|+|++|+-+.++||+||..+ ++-|+..
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~~ 493 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLHS 493 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCccccC
Confidence 4699999999999999999887 7889853
No 54
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=73.76 E-value=7.1 Score=42.97 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..|+.+++++|++.|+++||-||-
T Consensus 205 ~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 205 SVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEE
Confidence 479999999999999999998884
No 55
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=73.01 E-value=48 Score=40.15 Aligned_cols=82 Identities=9% Similarity=0.133 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCc-chhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHH
Q 007610 231 SDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPE-IVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINV 309 (596)
Q Consensus 231 ~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~-l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v 309 (596)
+|+|++|+-|.++||+||-.+ ++-|+......... |......++...... +. +....+++-++..++.+.+++.+.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~s~ld~~~P~YY~r~~~~-G~-~~n~~~~~d~a~e~~~Vrk~iiDs 480 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTNASGPNDRSVLDKIVPGYYHRLNED-GG-VENSTCCSNTATEHRMMAKLIVDS 480 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-ecccccccCccCcccccccCcHhhEeeCCC-CC-eecCCCCcCCCCCCHHHHHHHHHH
Confidence 699999999999999999988 68888642111000 100000010000000 00 111223445667788888888777
Q ss_pred HHHHHH
Q 007610 310 LENVAS 315 (596)
Q Consensus 310 ~~Ev~~ 315 (596)
+.-..+
T Consensus 481 l~~W~~ 486 (898)
T TIGR02103 481 LVVWAK 486 (898)
T ss_pred HHHHHH
Confidence 766554
No 56
>PLN00196 alpha-amylase; Provisional
Probab=71.09 E-value=15 Score=40.58 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEee----cCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCC
Q 007610 178 VDDILRTISAMSANKLNVFHWHIT----DSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDT 253 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~Hlt----Ddq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~ 253 (596)
...|.+-|+.++..+++.+.+=.. .++|+ ... .+-..+. ..+=|++|++++|+-|+++||+||-.+ +
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY--~~~---D~y~ld~---~~fGt~~elk~Lv~~aH~~GIkVilDv-V 113 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGY--MPG---RLYDLDA---SKYGNEAQLKSLIEAFHGKGVQVIADI-V 113 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCC--Ccc---ccCCCCc---ccCCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 466888899999999999887421 11221 000 0001110 012289999999999999999999988 7
Q ss_pred CChhhh
Q 007610 254 PGHSGS 259 (596)
Q Consensus 254 PGH~~a 259 (596)
+.|+.+
T Consensus 114 ~NH~~~ 119 (428)
T PLN00196 114 INHRTA 119 (428)
T ss_pred ccCccc
Confidence 889874
No 57
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=70.21 E-value=8.4 Score=38.86 Aligned_cols=100 Identities=9% Similarity=-0.122 Sum_probs=61.0
Q ss_pred HHHHHHhhcCCCeeeeeceEEeccC---CcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCC
Q 007610 136 LETFSQLVWGNPSCVAVGIYVWDEP---LFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPS 212 (596)
Q Consensus 136 l~Tl~QL~~~~~~~ip~~~~I~D~P---~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~ 212 (596)
++.+++++...+..+. + +...+ ....||.+++..+.--..+.+++.|+.++..+...+..+. |..-.-..
T Consensus 41 ~~~l~~~l~~~gl~v~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~----g~~~~~~~ 113 (254)
T TIGR03234 41 AEALKARLAAAGLEQV-L--FNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGCPQVNCLA----GKRPAGVS 113 (254)
T ss_pred HHHHHHHHHHcCCeEE-E--EeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECc----CCCCCCCC
Confidence 5667788775444443 2 22111 2335666666554433368889999999999999887653 11100000
Q ss_pred CccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 213 DPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 213 ~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
..+.. ....+.++++.+||+++||++.-|-
T Consensus 114 ~~~~~---------~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 114 PEEAR---------ATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 00110 1234679999999999999999984
No 58
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=68.86 E-value=22 Score=37.56 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=74.7
Q ss_pred CCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHH
Q 007610 160 PLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEY 239 (596)
Q Consensus 160 P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~y 239 (596)
|++.+.+.+ +|.+.+-+.++++++.|..+++-.=.+|+-|.....-..-++ .....=.|.+ ..| -|.+++|+.
T Consensus 7 P~wa~G~~~---~~~~~s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~-~~~~~f~~d~-~~F--Pdp~~mi~~ 79 (317)
T cd06594 7 PDWAYGGAI---LGLQGGTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGD-RLWWNWEWDP-ERY--PGLDELIEE 79 (317)
T ss_pred chhhhCcEE---eeeeCCHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccc-eeeeeeEECh-hhC--CCHHHHHHH
Confidence 555555555 354459999999999999998876556663321110000000 0000000110 112 257899999
Q ss_pred HHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcC--CCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHH
Q 007610 240 GLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWW--PAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENV 313 (596)
Q Consensus 240 A~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~--~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev 313 (596)
-+++|++||+-|+ |+-...-...|.+... ..+.+ ++++++.... -...+..+|.+||++.+...+.+++.
T Consensus 80 Lh~~G~~~~~~i~-P~v~~~~~~~y~~~~~--~g~~vk~~~g~~~~~~~-w~g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 80 LKARGIRVLTYIN-PYLADDGPLYYEEAKD--AGYLVKDADGSPYLVDF-GEFDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred HHHCCCEEEEEec-CceecCCchhHHHHHH--CCeEEECCCCCeeeecc-CCCCceeeecCCHHHHHHHHHHHHHH
Confidence 9999999999876 5432110000112111 00000 1111110000 01123568999999999998888876
No 59
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=65.83 E-value=19 Score=39.62 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=75.5
Q ss_pred CCcccccceecCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHH
Q 007610 160 PLFSHRGLLLDTSRNY-YEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIE 238 (596)
Q Consensus 160 P~f~~RG~mlD~aR~f-~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~ 238 (596)
|++.+ |+++ +|.. .+.+.++++|+.|...++-.=.+++.++ |- . .+..++ +. ...+. +.+++++
T Consensus 26 P~wal-G~~~--~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~--~~--~-~~~~f~----~d-~~~FP--d~~~~~~ 90 (441)
T PF01055_consen 26 PRWAL-GFWQ--SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDD--YQ--D-GYGDFT----WD-PERFP--DPKQMID 90 (441)
T ss_dssp -GGGG-SEEE--EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GG--GS--B-TTBTT-----B--TTTTT--THHHHHH
T ss_pred chhhh-ceEe--ecCcCCCHHHHHHHHHHHHHcCCCccceecccc--cc--c-cccccc----cc-ccccc--chHHHHH
Confidence 56777 8888 4444 5799999999999999999777776554 11 0 111111 10 11222 7899999
Q ss_pred HHHhcCCEEEeccCCCChhhhHHhhCCcchhccc-cCcC--CCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHH
Q 007610 239 YGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCAN-KFWW--PAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVAS 315 (596)
Q Consensus 239 yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~-~~~~--~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~ 315 (596)
..+++||++++-++--=+..+- .++.+..+.. .+.+ ++++++.... -......+|.++|++.++..+.++++.+
T Consensus 91 ~l~~~G~~~~~~~~P~v~~~~~--~~~~~~~~~~~~~~v~~~~g~~~~~~~-w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 167 (441)
T PF01055_consen 91 ELHDQGIKVVLWVHPFVSNDSP--DYENYDEAKEKGYLVKNPDGSPYIGRV-WPGKGGFIDFTNPEARDWWKEQLKELLD 167 (441)
T ss_dssp HHHHTT-EEEEEEESEEETTTT--B-HHHHHHHHTT-BEBCTTSSB-EEEE-TTEEEEEB-TTSHHHHHHHHHHHHHHHT
T ss_pred hHhhCCcEEEEEeecccCCCCC--cchhhhhHhhcCceeecccCCcccccc-cCCcccccCCCChhHHHHHHHHHHHHHh
Confidence 9999999999866421111110 0001111000 0000 1111111000 0001357999999999999999999888
Q ss_pred hCCC
Q 007610 316 IFPE 319 (596)
Q Consensus 316 lF~~ 319 (596)
.++-
T Consensus 168 ~~Gv 171 (441)
T PF01055_consen 168 DYGV 171 (441)
T ss_dssp TST-
T ss_pred ccCC
Confidence 7543
No 60
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=65.25 E-value=11 Score=40.58 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCEEEeccCCCChhh
Q 007610 225 DYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSG 258 (596)
Q Consensus 225 ~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~ 258 (596)
+.+||++-+++|.+.|+++||.||-. ++-||+-
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaD-EVY~~~v 245 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIAD-EVYGHTV 245 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEeh-hhcceee
Confidence 46999999999999999999999975 4677764
No 61
>PLN03244 alpha-amylase; Provisional
Probab=63.84 E-value=17 Score=43.00 Aligned_cols=82 Identities=13% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHh-hCCcchhccccCcCCC----CCccccccccCCCCCcCCCCChh
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAG-AHPEIVSCANKFWWPA----GTKWEDRLASEPGTGQLNPLHPK 301 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~-~yp~l~~~~~~~~~~~----~~~w~~~~~~~~~~~~L~p~~~~ 301 (596)
+=|.+|+|.+|+-|.++||.||-.+ +++|+..-.. ....+......+.-.+ -..|+ +..+|..+++
T Consensus 437 YGTPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WG--------s~~fnyg~~E 507 (872)
T PLN03244 437 YGTPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWG--------TRMFKYGDLD 507 (872)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCC--------CceecCCCHH
Confidence 3489999999999999999999988 6899864210 0000100000110000 01232 2468889999
Q ss_pred HHHHHHHHHHHHHHhC
Q 007610 302 TFGVMINVLENVASIF 317 (596)
Q Consensus 302 t~~f~~~v~~Ev~~lF 317 (596)
+..|+-+.+.-.++-|
T Consensus 508 Vr~FLLsna~yWleEy 523 (872)
T PLN03244 508 VLHFLISNLNWWITEY 523 (872)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998888755
No 62
>PLN02187 rooty/superroot1
Probab=62.66 E-value=20 Score=39.83 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||.+++++|++.|+++||-||-
T Consensus 219 ~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 219 NVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CccCHHHHHHHHHHHHHCCCEEEE
Confidence 479999999999999999998774
No 63
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=62.58 E-value=43 Score=35.11 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCC-CCCCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 174 NYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGE-DYLYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 174 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~-~~~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
..++-+.|+++++.|..+++..=.+++-|+ |- . ..|.|.- ...+. +.+++++.-+++|+++++-|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---~------~~g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDN--WE---T------CYGDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCC--cc---c------cCCccccChhhCC--CHHHHHHHHHHCCCeEEEEEC
Confidence 357789999999999999987555555433 31 1 1122221 12333 588999999999999998776
Q ss_pred CCChhhhHHhhCCcchhccccCcC--CCC-CccccccccCCCCCcCCCCChhHHHHHHHHHHHHH
Q 007610 253 TPGHSGSWAGAHPEIVSCANKFWW--PAG-TKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVA 314 (596)
Q Consensus 253 ~PGH~~a~~~~yp~l~~~~~~~~~--~~~-~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~ 314 (596)
|+-... ...|.+... ..+.+ +++ .+..... -...+..+|.+||++.++..+.++++.
T Consensus 92 -P~i~~~-s~~~~e~~~--~g~~vk~~~g~~~~~~~~-w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 92 -PFINTD-SENFREAVE--KGYLVSEPSGDIPALTRW-WNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred -CeeCCC-CHHHHhhhh--CCeEEECCCCCCCcccce-ecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 422210 011112110 00000 011 0000000 001245799999999999999999887
No 64
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=61.13 E-value=25 Score=45.21 Aligned_cols=76 Identities=9% Similarity=0.061 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEeec----CCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 007610 175 YYEVDDILRTISAMSANKLNVFHWHITD----SHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 175 f~~~~~ik~~Id~ma~~KlN~lh~HltD----dq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPE 250 (596)
=++.+.+.+.|+.++.+++|.+.+=-.= ...+.|.+..|-.+. ..+=|.++++.|++-|+++||.||-.
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id-------p~lG~~edf~~Lv~~ah~~Gi~vilD 826 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN-------PEIGGEEGFERFCAALKAHGLGQLLD 826 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC-------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4678999999999999999976652110 011112221111111 01227999999999999999999999
Q ss_pred cCCCChhh
Q 007610 251 IDTPGHSG 258 (596)
Q Consensus 251 ID~PGH~~ 258 (596)
| +|.|++
T Consensus 827 i-V~NH~~ 833 (1693)
T PRK14507 827 I-VPNHMG 833 (1693)
T ss_pred e-cccccC
Confidence 8 789997
No 65
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=59.97 E-value=48 Score=35.02 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=69.1
Q ss_pred CCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHH
Q 007610 160 PLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEY 239 (596)
Q Consensus 160 P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~y 239 (596)
|++.+ |++.-- -++.+.+.++++++.+..+++..=.+++-.+ -|. -..+..++ |. ...| -+.+++++.
T Consensus 7 P~wal-G~~~sr-~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~-~~~--~~~~~~f~----~d-~~~F--Pdp~~mi~~ 74 (319)
T cd06591 7 PKWAY-GFWQSK-ERYKTQEELLDVAKEYRKRGIPLDVIVQDWF-YWP--KQGWGEWK----FD-PERF--PDPKAMVRE 74 (319)
T ss_pred chHHH-HHHHhc-ccCCCHHHHHHHHHHHHHhCCCccEEEEech-hhc--CCCceeEE----EC-hhhC--CCHHHHHHH
Confidence 34444 555422 2456899999999999999888655655322 110 00000111 11 0112 157889999
Q ss_pred HHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcCC--CCCccccccccCC-CCCcCCCCChhHHHHHHHHHHH
Q 007610 240 GLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWP--AGTKWEDRLASEP-GTGQLNPLHPKTFGVMINVLEN 312 (596)
Q Consensus 240 A~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~--~~~~w~~~~~~~~-~~~~L~p~~~~t~~f~~~v~~E 312 (596)
.+++||+||+-|+ |+=.. -...|.+.... .+.+. ++.... ...+ ....+|.+||++.+...+.+++
T Consensus 75 L~~~G~kv~~~i~-P~v~~-~~~~y~e~~~~--g~~v~~~~g~~~~---~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 75 LHEMNAELMISIW-PTFGP-ETENYKEMDEK--GYLIKTDRGPRVT---MQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred HHHCCCEEEEEec-CCcCC-CChhHHHHHHC--CEEEEcCCCCeee---eeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 9999999998665 54110 00011111110 00000 111000 0011 1357999999999987666654
No 66
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=59.45 E-value=15 Score=37.58 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 176 YEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 176 ~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
-.++.+++.|+.++..+.+.+-.|.....+ ....+ . -....+-+++|+++|++.||+|.-|-
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~-----~~~~~-----~----~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLVFHPGSYLG-----QSKEE-----G----LKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCC-----CCHHH-----H----HHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 347889999999999999988777532110 00000 0 02346789999999999999999885
No 67
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=59.07 E-value=18 Score=41.39 Aligned_cols=197 Identities=17% Similarity=0.227 Sum_probs=96.8
Q ss_pred eccCCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccc-cccCCCC--CCCCCCHHHH
Q 007610 157 WDEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNL-AAKGSYG--EDYLYTPSDV 233 (596)
Q Consensus 157 ~D~P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L-t~~Ga~~--~~~~YT~~di 233 (596)
.|+=|||--|++=|..-. .+.+..++.|+.|+.+.+|.+++. |--||-+-|-.+.- .....|. .+...+.+-|
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFY---DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~V 172 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFY---DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTV 172 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEET---S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEE---eeccccCCcCCCCCCchhhhhhhhcCCEehHHHH
Confidence 489999999999663322 345899999999999999999974 22233222211000 0001121 1235678899
Q ss_pred HHHHHHHHhcCCEEEeccCCCChhhhHHh--hCCcchh----ccc---cCcCCCCCccccccccCCCCCcCCCCChhHHH
Q 007610 234 KKIIEYGLDYGVRVVPEIDTPGHSGSWAG--AHPEIVS----CAN---KFWWPAGTKWEDRLASEPGTGQLNPLHPKTFG 304 (596)
Q Consensus 234 ~eiv~yA~~rgI~VIPEID~PGH~~a~~~--~yp~l~~----~~~---~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~ 304 (596)
|+.|+-|+++|+..++=.=+-|=...... ..|+-.. +.. .+.++ ..|.. .---+||+|++=..
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~--~~w~s------~lyl~dP~N~~WQ~ 244 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLP--DGWPS------DLYLMDPGNPEWQN 244 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEET--T-E--------EEEEB-TT-HHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecC--ccccc------ceEEecCCCHHHHH
Confidence 99999999999999986433332222111 1111100 000 00000 01110 01247999999888
Q ss_pred HHHHHHHHHHHhCCCCceec---CCCCcCccccCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhcCCcEEEeccc
Q 007610 305 VMINVLENVASIFPENFFHS---GGDEILPACWKSDSLIQSFLSTGG-TLSEVLEKFINFVFPFIVALDKTAIYWEDV 378 (596)
Q Consensus 305 f~~~v~~Ev~~lF~~~~iHi---GgDEv~~~~w~~~p~~~~~m~~~g-~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~ 378 (596)
.|-+=+.++.+.|.-.=||| | +-... +..+.. .- ++.+-|..|++.+.+.+ ..+.++=+.+
T Consensus 245 yI~~q~~~~~~~~gFDG~hlDq~G-~~~~~--~d~~G~-------~i~~l~~~y~~Fi~~~K~~~---~~k~lv~N~V 309 (559)
T PF13199_consen 245 YIINQMNKAIQNFGFDGWHLDQLG-NRGTV--YDYDGN-------KIYDLSDGYASFINAMKEAL---PDKYLVFNAV 309 (559)
T ss_dssp HHHHHHHHHHHHHT--EEEEE-S---EEEE--GGTT----------GGECHHHHHHHHHHHHHHS---TTSEEEEB-G
T ss_pred HHHHHHHHHHHccCCceEeeeccC-CCCcc--ccCCCC-------CchhhHHHHHHHHHHHHHhC---CCCceeeecc
Confidence 99888999999888777773 5 21111 111100 00 23567888888876655 2333555554
No 68
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=58.54 E-value=31 Score=40.01 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCCcEEEEEeecCC----cccccCCCCccccccCCCC-----CC-CCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 182 LRTISAMSANKLNVFHWHITDSH----SFPLLLPSDPNLAAKGSYG-----ED-YLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 182 k~~Id~ma~~KlN~lh~HltDdq----~frle~~~~P~Lt~~Ga~~-----~~-~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
..+-|.+...+++.+|+-..=.. ||.+- |. . -|.|. -+ .+=|.+|++++++-|++|||+||-++
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~t-P~---~--D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl 150 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFT-PS---I--DGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI 150 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCC-CC---C--CCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35668888899999988432110 11100 00 0 01111 11 23399999999999999999999888
Q ss_pred CCCChhhh
Q 007610 252 DTPGHSGS 259 (596)
Q Consensus 252 D~PGH~~a 259 (596)
+|+|++.
T Consensus 151 -VpnHTs~ 157 (688)
T TIGR02455 151 -IPAHTGK 157 (688)
T ss_pred -CCCCCCC
Confidence 7899863
No 69
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=58.22 E-value=58 Score=36.13 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=40.4
Q ss_pred cCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007610 170 DTSRNY-YEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 170 D~aR~f-~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VI 248 (596)
|...+| +.++.+++.+.....-+.++=-+.++ .|.-| .| ..||++++++|++.|++++|-||
T Consensus 175 ~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~--------nP~NP----tG-----~~~s~e~l~~l~~~~~~~~i~lI 237 (447)
T PLN02607 175 DSSNNFQVTPQALEAAYQEAEAANIRVRGVLIT--------NPSNP----LG-----ATVQRSVLEDILDFVVRKNIHLV 237 (447)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEe--------CCCCC----cC-----cccCHHHHHHHHHHHHHCCCEEE
Confidence 434455 45777777776544434443122222 13333 23 37999999999999999999988
Q ss_pred e
Q 007610 249 P 249 (596)
Q Consensus 249 P 249 (596)
-
T Consensus 238 ~ 238 (447)
T PLN02607 238 S 238 (447)
T ss_pred E
Confidence 4
No 70
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=55.84 E-value=2.1e+02 Score=33.71 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE-EeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc-CC
Q 007610 176 YEVDDILRTISAMSANKLNVFHW-HITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI-DT 253 (596)
Q Consensus 176 ~~~~~ik~~Id~ma~~KlN~lh~-HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI-D~ 253 (596)
+|-+.+++-|+.|...++|++-. .+. |-+.-| + .|.|. +|.-|.. .++.|.+-||.||--- -+
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~fa----W~~~eP---~---eG~fd----f~~~D~~-~l~~a~~~Gl~vil~t~P~ 91 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYFA----WNLHEP---E---EGKFD----FTWLDEI-FLERAYKAGLYVILRTGPT 91 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeEE----eeccCc---c---ccccC----cccchHH-HHHHHHhcCceEEEecCCC
Confidence 45688999999999999998776 443 443322 2 34442 4544444 6999999999999765 34
Q ss_pred CChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHh-CCC----CceecCCCC
Q 007610 254 PGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASI-FPE----NFFHSGGDE 328 (596)
Q Consensus 254 PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~l-F~~----~~iHiGgDE 328 (596)
.++.....+.||++..-... +. ....+.-..+||+++--.+.+..|+..+.+- +.. -.+|+-- |
T Consensus 92 g~~P~Wl~~~~PeiL~~~~~--------~~--~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-e 160 (673)
T COG1874 92 GAPPAWLAKKYPEILAVDEN--------GR--VRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-E 160 (673)
T ss_pred CCCchHHhcCChhheEecCC--------Cc--ccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-c
Confidence 56666667789998643221 11 1122233468999997777888888888776 432 3466654 6
Q ss_pred cCc-ccc
Q 007610 329 ILP-ACW 334 (596)
Q Consensus 329 v~~-~~w 334 (596)
+.. .||
T Consensus 161 Y~~~~~~ 167 (673)
T COG1874 161 YGGHPCY 167 (673)
T ss_pred cCCcccc
Confidence 654 565
No 71
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=54.29 E-value=39 Score=42.50 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=57.7
Q ss_pred CCCC-HHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCC------C-CC----CCHHHHHHHHHHHH
Q 007610 174 NYYE-VDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGE------D-YL----YTPSDVKKIIEYGL 241 (596)
Q Consensus 174 ~f~~-~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~------~-~~----YT~~di~eiv~yA~ 241 (596)
+++. .+...+-++.++..+.|.+|+-. ++-.+ .+...|+- + .+ -|.+|++++|+-|.
T Consensus 126 K~mG~~~~w~~~L~~ik~lGyN~IhftP-------I~~~G----~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h 194 (1464)
T TIGR01531 126 KLLGPLSEWEPRLRVAKEKGYNMIHFTP-------LQELG----GSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLH 194 (1464)
T ss_pred hhcCCHHHHHHHHHHHHHcCCCEEEeCC-------CccCC----CCCCCccccchhhcChhhcccCCcHHHHHHHHHHHH
Confidence 3443 57788999999999999999842 22100 01112221 1 11 37899999999999
Q ss_pred hc-CCEEEeccCCCChhhh---HHhhCCcc
Q 007610 242 DY-GVRVVPEIDTPGHSGS---WAGAHPEI 267 (596)
Q Consensus 242 ~r-gI~VIPEID~PGH~~a---~~~~yp~l 267 (596)
++ ||.+|-.+ +..|++. |+..|||-
T Consensus 195 ~~~Gm~~ilDv-V~NHTa~ds~Wl~eHPEa 223 (1464)
T TIGR01531 195 RDWNVLSITDI-VFNHTANNSPWLLEHPEA 223 (1464)
T ss_pred HhcCCEEEEEe-eecccccCCHHHHhChHh
Confidence 97 99999887 7788864 88888874
No 72
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=54.23 E-value=31 Score=37.59 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||.+++++|++.|+++++-||-
T Consensus 185 ~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 185 SVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CccCHHHHHHHHHHHHHcCCeEEE
Confidence 379999999999999999998873
No 73
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=53.69 E-value=84 Score=34.26 Aligned_cols=104 Identities=18% Similarity=0.398 Sum_probs=66.8
Q ss_pred eEEEEecChhhhhHHHHHHHHhhcC---CCeeeeeceEEeccCCcc-----c----ccceecCCCCC-CCHHHHHHHHHH
Q 007610 121 TAYLVASTVWGAMRGLETFSQLVWG---NPSCVAVGIYVWDEPLFS-----H----RGLLLDTSRNY-YEVDDILRTISA 187 (596)
Q Consensus 121 ~i~I~a~~~~G~~~gl~Tl~QL~~~---~~~~ip~~~~I~D~P~f~-----~----RG~mlD~aR~f-~~~~~ik~~Id~ 187 (596)
.|-+++ |+-.|+.++++|+-. .++.+| |--+|-|. + -...||-.++| ..++.|++.++.
T Consensus 138 dI~LT~----GAS~ai~~il~l~~~~~~~GvliP----iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~e 209 (475)
T KOG0258|consen 138 DIFLTT----GASPAIRSILSLLIAGKKTGVLIP----IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDE 209 (475)
T ss_pred HeeecC----CCcHHHHHHHHHHhcCCCCceEee----cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHH
Confidence 466665 666778899998863 233344 44555543 1 12356777777 567888888877
Q ss_pred HHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 007610 188 MSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 188 ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPE 250 (596)
.. -.+|.=-+-+-. |+-| .| ..+|.+-|++|+.+|++.|+-++..
T Consensus 210 A~-k~i~~r~lvvIN--------PGNP----TG-----qvls~e~ie~i~~fa~~~~l~llaD 254 (475)
T KOG0258|consen 210 AR-KGINPRALVVIN--------PGNP----TG-----QVLSEENIEGIICFAAEEGLVLLAD 254 (475)
T ss_pred Hh-ccCCceEEEEEC--------CCCc----cc-----hhhcHHHHHHHHHHHHHcCeEEech
Confidence 55 555533332211 3333 22 4799999999999999999988853
No 74
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.09 E-value=68 Score=32.00 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCcccc---cCCCC---ccccccCCCCCCCCCCHHHHH----------------
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSHSFPL---LLPSD---PNLAAKGSYGEDYLYTPSDVK---------------- 234 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq~frl---e~~~~---P~Lt~~Ga~~~~~~YT~~di~---------------- 234 (596)
+.+...++++.|..-++.++-+-++....... -.+.| |++. .|+ +..+|.+|++
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~-vGa---GTV~~~~~~~~a~~aGA~FivsP~~~ 98 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVL-IGA---GTVLDAVTARLAILAGAQFIVSPSFN 98 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeE-Eee---eeCCCHHHHHHHHHcCCCEEECCCCC
Confidence 78999999999999999999998875543321 01234 4444 455 3467777765
Q ss_pred -HHHHHHHhcCCEEEeccCCCChhhhHHh
Q 007610 235 -KIIEYGLDYGVRVVPEIDTPGHSGSWAG 262 (596)
Q Consensus 235 -eiv~yA~~rgI~VIPEID~PGH~~a~~~ 262 (596)
+++++|+++||-+||-.-+|.-......
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~~E~~~A~~ 127 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTVTEIVTALE 127 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCHHHHHHHHH
Confidence 7899999999999999998877765544
No 75
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=53.00 E-value=1.8e+02 Score=32.21 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=106.6
Q ss_pred CCcceEEEEecC-C-CeEEEEecChhhhhHHHHHHHHhhc-CCCeeeeeceEEeccCCcccccce----ec--CCCCCC-
Q 007610 107 VNESYSLTITSD-E-NTAYLVASTVWGAMRGLETFSQLVW-GNPSCVAVGIYVWDEPLFSHRGLL----LD--TSRNYY- 176 (596)
Q Consensus 107 ~~E~Y~L~i~~~-~-~~i~I~a~~~~G~~~gl~Tl~QL~~-~~~~~ip~~~~I~D~P~f~~RG~m----lD--~aR~f~- 176 (596)
++|||.|..-.- + ....|.|++..|++||+=-|+.||. ++. +. .+.|-..|+-..|-+. || +-|.|-
T Consensus 92 gEEGy~irt~~~~g~~~lvi~g~t~~gvlYG~F~ll~liq~g~~--v~-kl~iv~~Pk~klRMlNhWDNlDg~iERGYaG 168 (684)
T COG3661 92 GEEGYLIRTVTVGGKATLVIAGNTDIGVLYGVFRLLSLIQTGQS--VD-KLDIVSVPKVKLRMLNHWDNLDGHIERGYAG 168 (684)
T ss_pred cCcceEEEEEEeCCeEEEEEEeccceeEEeeHHHHHHHHHhccc--hh-hcchhcCcHHHHhhhhhhhccccceecccCC
Confidence 689998865321 2 2468999999999999988888887 322 33 4556677777766551 22 112221
Q ss_pred ------------CHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCc--cccccCCCCCCCCCCHHHHHHHHHHHHh
Q 007610 177 ------------EVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDP--NLAAKGSYGEDYLYTPSDVKKIIEYGLD 242 (596)
Q Consensus 177 ------------~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P--~Lt~~Ga~~~~~~YT~~di~eiv~yA~~ 242 (596)
-.+.+|.+-+.+|..++|-.-+.-.. +++-. .++.+ =-.+++.|...-+.
T Consensus 169 ~SIFf~~n~~~~n~qR~kDYAR~laSiGINg~v~NNVN-------vk~~e~~lit~~---------fl~k~aklAdiFR~ 232 (684)
T COG3661 169 QSIFFWWNLPGHNDQRMKDYARALASIGINGTVLNNVN-------VKKAESYLITAP---------FLAKAAKLADIFRP 232 (684)
T ss_pred CceeeeccccccchHHHHHHHHHHhhcCcceEEecccc-------cchhhhheechH---------hHHHHHHHHHHhhh
Confidence 13778889999999999987775332 12100 11110 13456667777789
Q ss_pred cCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC
Q 007610 243 YGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPE 319 (596)
Q Consensus 243 rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~ 319 (596)
+||.|.-.|+.-.-+ +|. .-.+-||.+|++..+-++-.+|+-+..|+
T Consensus 233 YGIK~yLsinfaSP~--------~lG----------------------gL~TADPLDe~VrawWkeka~~IY~yIPD 279 (684)
T COG3661 233 YGIKVYLSINFASPM--------ELG----------------------GLKTADPLDEAVRAWWKEKADEIYKYIPD 279 (684)
T ss_pred ccceEEEEeccCCcc--------ccC----------------------CcCcCCcccHHHHHHHHHHHHHHHHhccc
Confidence 999999887632221 111 11356889999999999999998888775
No 76
>PLN02656 tyrosine transaminase
Probab=52.82 E-value=38 Score=36.81 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..||.+++++|++.|+++|+-||
T Consensus 184 ~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 184 NVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999999877
No 77
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=52.57 E-value=16 Score=35.39 Aligned_cols=85 Identities=14% Similarity=0.245 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccc---ccCCCCccccccCCC--------------CCCCCCCHHHHHHHHHH
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSHSFP---LLLPSDPNLAAKGSY--------------GEDYLYTPSDVKKIIEY 239 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq~fr---le~~~~P~Lt~~Ga~--------------~~~~~YT~~di~eiv~y 239 (596)
+.+.++++++.+...++..+.+.+++....+ .-.+.+|++. .|+- +.+..-+.....+++++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~-iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~ 92 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEAL-IGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKA 92 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHH
Confidence 4788888999999999999999887654222 1112345331 1210 01122233334689999
Q ss_pred HHhcCCEEEeccCCCChhhhHHh
Q 007610 240 GLDYGVRVVPEIDTPGHSGSWAG 262 (596)
Q Consensus 240 A~~rgI~VIPEID~PGH~~a~~~ 262 (596)
++.+|+.+||++.+|.++.....
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~ 115 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALE 115 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHH
Confidence 99999999999998877655544
No 78
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=52.03 E-value=56 Score=34.61 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=47.9
Q ss_pred EeccCCcccccceecCCCCC--CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCC-HHH
Q 007610 156 VWDEPLFSHRGLLLDTSRNY--YEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYT-PSD 232 (596)
Q Consensus 156 I~D~P~f~~RG~mlD~aR~f--~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT-~~d 232 (596)
|.+.|-+..=|-+ || +|.+...+.++.|...++|++..++- |.+.-+. .|.|. +| ..|
T Consensus 4 ~~g~~~~~~~Ge~-----hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~----W~~he~~------~g~~d----f~g~~d 64 (319)
T PF01301_consen 4 IDGKPFFILSGEF-----HYFRIPPEYWRDRLQKMKAAGLNTVSTYVP----WNLHEPE------EGQFD----FTGNRD 64 (319)
T ss_dssp ETTEEE-EEEEEE------GGGS-GGGHHHHHHHHHHTT-SEEEEE------HHHHSSB------TTB-------SGGG-
T ss_pred ECCEEEEEEEeee-----ccccCChhHHHHHHHHHHhCCcceEEEecc----ccccCCC------CCccc----ccchhh
Confidence 4444444444443 33 46888899999999999999999864 5554322 24442 23 479
Q ss_pred HHHHHHHHHhcCCEEEecc
Q 007610 233 VKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 233 i~eiv~yA~~rgI~VIPEI 251 (596)
++.+++.|++.|+-||--+
T Consensus 65 l~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 65 LDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHcCcEEEecc
Confidence 9999999999999998654
No 79
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=50.93 E-value=40 Score=36.66 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..+|.+++++|++.|+++|+-||=
T Consensus 192 ~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 192 SNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cccCHHHHHHHHHHHHHcCCeEEE
Confidence 368999999999999999997773
No 80
>PRK05942 aspartate aminotransferase; Provisional
Probab=50.49 E-value=47 Score=35.80 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..+|.+++++|++.|+++|+-||=
T Consensus 185 ~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 185 ATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEEE
Confidence 369999999999999999998873
No 81
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.76 E-value=92 Score=32.84 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=74.3
Q ss_pred CCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccc-C--CCCccccccCCCCCCCCCCHHHHHHH
Q 007610 160 PLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLL-L--PSDPNLAAKGSYGEDYLYTPSDVKKI 236 (596)
Q Consensus 160 P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle-~--~~~P~Lt~~Ga~~~~~~YT~~di~ei 236 (596)
|++.+ |++.-. -.+.+-+.+.++|+.+..+++-+=.+++-++ |--. . ..+-.++ |. ...|. |.+++
T Consensus 7 P~wa~-G~~~s~-~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--w~~~~~~~~~~~~f~----wd-~~~FP--dp~~m 75 (317)
T cd06598 7 PRWAL-GNWASR-FGYRNWQEVDDTIKTLREKDFPLDAAILDLY--WFGKDIDKGHMGNLD----WD-RKAFP--DPAGM 75 (317)
T ss_pred chHHH-HHHHhc-CCCCCHHHHHHHHHHHHHhCCCceEEEEech--hhcCcccCCceeeeE----ec-cccCC--CHHHH
Confidence 56666 666432 2456789999999999999887544444322 2100 0 0000111 10 12232 56789
Q ss_pred HHHHHhcCCEEEeccCCCC-hhhhHHhhCCcchhccccCcC---CCCCccccccccCCCCCcCCCCChhHHHHHHHHHHH
Q 007610 237 IEYGLDYGVRVVPEIDTPG-HSGSWAGAHPEIVSCANKFWW---PAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLEN 312 (596)
Q Consensus 237 v~yA~~rgI~VIPEID~PG-H~~a~~~~yp~l~~~~~~~~~---~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~E 312 (596)
++.-+++||+|++-|+ |+ .... ..|.++... .+.+ ..+.+..... -....+.+|.+||++.++..+.+++
T Consensus 76 i~~L~~~G~k~~~~v~-P~v~~~~--~~y~e~~~~--g~l~~~~~~~~~~~~~~-w~g~~~~~Dftnp~a~~w~~~~~~~ 149 (317)
T cd06598 76 IADLAKKGVKTIVITE-PFVLKNS--KNWGEAVKA--GALLKKDQGGVPTLFDF-WFGNTGLIDWFDPAAQAWFHDNYKK 149 (317)
T ss_pred HHHHHHcCCcEEEEEc-CcccCCc--hhHHHHHhC--CCEEEECCCCCEeeeec-cCCCccccCCCCHHHHHHHHHHHHH
Confidence 9999999999999886 22 1111 112222110 0000 0000000000 0012457899999999999999988
Q ss_pred HHH
Q 007610 313 VAS 315 (596)
Q Consensus 313 v~~ 315 (596)
+.+
T Consensus 150 ~~~ 152 (317)
T cd06598 150 LID 152 (317)
T ss_pred hhh
Confidence 744
No 82
>PTZ00377 alanine aminotransferase; Provisional
Probab=48.92 E-value=46 Score=37.10 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||.+++++|++.|+++++-||=
T Consensus 233 ~~~s~e~~~~i~~~a~~~~~~iI~ 256 (481)
T PTZ00377 233 QVLTRDVMEEIIKFCYEKGIVLMA 256 (481)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEE
Confidence 479999999999999999997774
No 83
>PRK09505 malS alpha-amylase; Reviewed
Probab=48.82 E-value=61 Score=38.12 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEee-cC-Cccccc--CCCCccccccCCCC-----C-CCCCCHHHHHHHHHHHHhcCCEE
Q 007610 178 VDDILRTISAMSANKLNVFHWHIT-DS-HSFPLL--LPSDPNLAAKGSYG-----E-DYLYTPSDVKKIIEYGLDYGVRV 247 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~Hlt-Dd-q~frle--~~~~P~Lt~~Ga~~-----~-~~~YT~~di~eiv~yA~~rgI~V 247 (596)
+.-|.+-||.+...++|.+.+=.. .. .++.-. -..+|.-+..|-+. - ..+=|.+|+++||+-|.+|||+|
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 777888899999999998886321 00 000000 00011000011000 0 11227899999999999999999
Q ss_pred EeccCCCChhh
Q 007610 248 VPEIDTPGHSG 258 (596)
Q Consensus 248 IPEID~PGH~~ 258 (596)
|-.+ ++.|++
T Consensus 309 ilD~-V~NH~~ 318 (683)
T PRK09505 309 LFDV-VMNHTG 318 (683)
T ss_pred EEEE-CcCCCc
Confidence 9988 678887
No 84
>PRK10658 putative alpha-glucosidase; Provisional
Probab=48.66 E-value=1.5e+02 Score=34.77 Aligned_cols=138 Identities=17% Similarity=0.266 Sum_probs=76.0
Q ss_pred CCcccccceecCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHH
Q 007610 160 PLFSHRGLLLDTSRNY-YEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIE 238 (596)
Q Consensus 160 P~f~~RG~mlD~aR~f-~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~ 238 (596)
|++.+ |+.+-.++.. ++-+.+.++++.|...++-.=.+|+-.+ |-=.. .+...+ |.+ ..+. |.+++++
T Consensus 264 P~Wal-G~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~--w~~~~-~~~~f~----wd~-~~FP--dp~~mi~ 332 (665)
T PRK10658 264 PAWSF-GLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCF--WMKEF-QWCDFE----WDP-RTFP--DPEGMLK 332 (665)
T ss_pred chhhh-heeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchh--hhcCC-ceeeeE----ECh-hhCC--CHHHHHH
Confidence 55665 7777553322 5678899999999999988555555322 21000 000111 000 1122 4567889
Q ss_pred HHHhcCCEEEeccCCCChh-h--hH--HhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHH
Q 007610 239 YGLDYGVRVVPEIDTPGHS-G--SW--AGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENV 313 (596)
Q Consensus 239 yA~~rgI~VIPEID~PGH~-~--a~--~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev 313 (596)
.-+++||+|+.-|+ |+=. . .. .....-| +.+ +++..|.... -+.....+|.+||++.+...+.++++
T Consensus 333 ~L~~~G~k~~~~i~-P~i~~~s~~f~e~~~~gy~--vk~----~~G~~~~~~~-W~g~~~~~Dftnp~ar~W~~~~~~~l 404 (665)
T PRK10658 333 RLKAKGLKICVWIN-PYIAQKSPLFKEGKEKGYL--LKR----PDGSVWQWDK-WQPGMAIVDFTNPDACKWYADKLKGL 404 (665)
T ss_pred HHHHCCCEEEEecc-CCcCCCchHHHHHHHCCeE--EEC----CCCCEeeeee-cCCCceeecCCCHHHHHHHHHHHHHH
Confidence 99999999998776 3211 0 01 1111111 100 2222222100 01234579999999999999999887
Q ss_pred HHh
Q 007610 314 ASI 316 (596)
Q Consensus 314 ~~l 316 (596)
.++
T Consensus 405 ~d~ 407 (665)
T PRK10658 405 LDM 407 (665)
T ss_pred Hhc
Confidence 764
No 85
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=48.32 E-value=26 Score=35.96 Aligned_cols=74 Identities=14% Similarity=0.260 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHH
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVM 306 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~ 306 (596)
.++++++++|+++|+++|++++-|+..--+..-+++.-+.+.. +|-.|=.|++.-
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIG-------------------------INnRdL~tf~vd 193 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIG-------------------------INNRDLTTLEVD 193 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEE-------------------------EeCCCcchheec
Confidence 5899999999999999999999999665555545544333321 223344455555
Q ss_pred HHHHHHHHHhCCCCceecC
Q 007610 307 INVLENVASIFPENFFHSG 325 (596)
Q Consensus 307 ~~v~~Ev~~lF~~~~iHiG 325 (596)
-+...++++..|...+-|.
T Consensus 194 l~~t~~la~~~p~~~~~Is 212 (254)
T COG0134 194 LETTEKLAPLIPKDVILIS 212 (254)
T ss_pred HHHHHHHHhhCCCCcEEEe
Confidence 5567778888887655443
No 86
>PRK07681 aspartate aminotransferase; Provisional
Probab=47.75 E-value=58 Score=35.14 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..+|++++++|++.|+++|+-||
T Consensus 181 ~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 181 AMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 47999999999999999999877
No 87
>PRK06348 aspartate aminotransferase; Provisional
Probab=47.10 E-value=51 Score=35.37 Aligned_cols=23 Identities=9% Similarity=0.470 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..+|.+++++|++.|+++|+-||
T Consensus 177 ~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 177 AVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred cCCCHHHHHHHHHHHHHCCeEEE
Confidence 46999999999999999999877
No 88
>PRK06290 aspartate aminotransferase; Provisional
Probab=45.61 E-value=63 Score=35.30 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..||.+++++|++.|+++|+-||
T Consensus 194 ~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 194 AVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 47999999999999999999776
No 89
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=44.98 E-value=71 Score=31.83 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VI 248 (596)
+.+.|+++.+.++.+... ++|+.-- .++-..+|-.|-..-.+......++++++++.+.++++|+.++
T Consensus 143 ~~e~i~~ia~~l~~l~~~--~~~llpy--h~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 143 SRENMQQALDVLIPLGIK--QIHLLPF--HQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CHHHHHHHHHHHHHcCCc--eEEEecC--CccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 578899999999887555 5565321 1111122222211101112235689999999999999999986
No 90
>PRK09265 aminotransferase AlaT; Validated
Probab=44.78 E-value=98 Score=33.45 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..++.+++++|++.|+++|+-||-
T Consensus 183 ~~~~~~~~~~i~~~a~~~~~~ii~ 206 (404)
T PRK09265 183 AVYSKELLEEIVEIARQHNLIIFA 206 (404)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEE
Confidence 368999999999999999998874
No 91
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=44.69 E-value=1.1e+02 Score=33.02 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||.+++++|++.|+++++-||-
T Consensus 191 ~~~s~~~~~~l~~~a~~~~~~iI~ 214 (409)
T PRK07590 191 TVLTKEQLKAWVDYAKENGSLILF 214 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEEE
Confidence 479999999999999999997774
No 92
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=44.48 E-value=28 Score=33.17 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
++.+++.|+.++.++...+.+|... |+.. +....... -....+-+++|.++|+++||+|..|-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~----~~~~~~~~----~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YPSG----PEDDTEEN----WERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ESSS----TTSSHHHH----HHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---cccc----cCCCHHHH----HHHHHHHHHHHHhhhhhhcceEEEec
Confidence 7899999999999999999999642 1110 00000000 01346679999999999999999984
No 93
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=44.30 E-value=27 Score=35.68 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCcc
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEI 267 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~l 267 (596)
.++++++++++++|.+.|++++-|+....-.......-+.+
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~i 174 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEI 174 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCE
Confidence 57899999999999999999999996665555555544444
No 94
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=44.07 E-value=96 Score=33.40 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..+|.+++++|++.|+++++-||=
T Consensus 187 ~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 187 ADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCCHHHHHHHHHHHHhCCcEEEE
Confidence 379999999999999999998874
No 95
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=44.07 E-value=72 Score=33.33 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007610 174 NYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 174 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..++++.|++.++....+.-+.=-+-++- -++. ..+..||.+||++|.++|+++||.|.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~-------------t~~~---~GG~~~s~~el~ai~~~a~~~gl~lh 162 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLEN-------------TTEL---AGGTVYSLEELRAISELAREHGLPLH 162 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEES-------------SBTT---TTSB---HHHHHHHHHHHHHHT-EEE
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEe-------------cCcC---CCCeeCCHHHHHHHHHHHHhCceEEE
Confidence 66799999999998776444433333321 1111 11257999999999999999998875
No 96
>PRK08636 aspartate aminotransferase; Provisional
Probab=43.81 E-value=1.1e+02 Score=33.14 Aligned_cols=23 Identities=4% Similarity=0.014 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..||.+++++|++.|+++++-||
T Consensus 190 ~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 190 ATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEE
Confidence 47999999999999999999887
No 97
>PRK05839 hypothetical protein; Provisional
Probab=43.78 E-value=1.2e+02 Score=32.39 Aligned_cols=24 Identities=4% Similarity=0.099 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..|+.+++++|++.|+++||-||-
T Consensus 170 ~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 170 RTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cccCHHHHHHHHHHHHHcCCEEEe
Confidence 479999999999999999998883
No 98
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=43.70 E-value=35 Score=35.83 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHhhcC---CCe-eeeeceEEeccCCcccccceecCC-CCCCCHHHHHHHHHHHHhCCCcEEE
Q 007610 131 GAMRGLETFSQLVWG---NPS-CVAVGIYVWDEPLFSHRGLLLDTS-RNYYEVDDILRTISAMSANKLNVFH 197 (596)
Q Consensus 131 G~~~gl~Tl~QL~~~---~~~-~ip~~~~I~D~P~f~~RG~mlD~a-R~f~~~~~ik~~Id~ma~~KlN~lh 197 (596)
|.+.-+++|.+++.. -+. .+ -+.++| .|+++|.--=.+ +.+++.+.++++++..+..+++++=
T Consensus 11 ~~~~~~~~lk~~id~ma~~k~N~l--~lhl~D--~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 11 NAVPKVSYLKKLLRLLALLGANGL--LLYYED--TFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIP 78 (301)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEE--EEEEec--ceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEe
Confidence 367778899998872 111 12 367889 788888643333 7999999999999999999998764
No 99
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=43.47 E-value=94 Score=35.00 Aligned_cols=24 Identities=4% Similarity=0.216 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||++++++|++.|++++|-||-
T Consensus 214 ~~~s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 214 TMLDKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEE
Confidence 479999999999999999998764
No 100
>PRK07324 transaminase; Validated
Probab=43.24 E-value=84 Score=33.67 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEec
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIPE 250 (596)
..++++++++|++.|+++|+-||-.
T Consensus 168 ~~~~~~~l~~i~~~a~~~~~~ii~D 192 (373)
T PRK07324 168 ALMDRAYLEEIVEIARSVDAYVLSD 192 (373)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3689999999999999999988853
No 101
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=43.16 E-value=1.2e+02 Score=35.72 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCEEEeccCCCChhhhHHh-----hCCcchhccccCcCCCCCccccccccCCCCC-cCCCCChhHH
Q 007610 230 PSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAG-----AHPEIVSCANKFWWPAGTKWEDRLASEPGTG-QLNPLHPKTF 303 (596)
Q Consensus 230 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~-----~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~-~L~p~~~~t~ 303 (596)
..|+|++|+-..++||+||-.+ +.-|+..-.. ....+. .+.|+.-++. +. +.+..+|| +|+..+|-+.
T Consensus 264 i~EfK~mV~~lHkaGI~VILDV-VfNHTae~~~~g~t~~f~~id--~~~Yyr~~~d--g~-~~N~TGcGNtln~~hpmvr 337 (697)
T COG1523 264 IKEFKDMVKALHKAGIEVILDV-VFNHTAEGNELGPTLSFRGID--PNYYYRLDPD--GY-YSNGTGCGNTLNTEHPMVR 337 (697)
T ss_pred HHHHHHHHHHHHHcCCEEEEEE-eccCcccccCcCcccccccCC--cCceEEECCC--CC-eecCCccCcccccCChHHH
Confidence 4599999999999999999988 7888853211 122221 1112211111 11 22333444 9999999999
Q ss_pred HHHHHHHHHHHHh
Q 007610 304 GVMINVLENVASI 316 (596)
Q Consensus 304 ~f~~~v~~Ev~~l 316 (596)
++|-+-|+=..+-
T Consensus 338 k~ivDsLrYWv~e 350 (697)
T COG1523 338 KLIVDSLRYWVEE 350 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 9988877765543
No 102
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=42.85 E-value=17 Score=41.03 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCCEEEe----------------ccCCCChhhhHHhhCCcchhccc
Q 007610 229 TPSDVKKIIEYGLDYGVRVVP----------------EIDTPGHSGSWAGAHPEIVSCAN 272 (596)
Q Consensus 229 T~~di~eiv~yA~~rgI~VIP----------------EID~PGH~~a~~~~yp~l~~~~~ 272 (596)
-++++-+=.+.-++|||+|-- -||||||+..-...-..|..|.+
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G 151 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDG 151 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCc
Confidence 477888888888999998854 49999999764443344556754
No 103
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=42.19 E-value=52 Score=29.33 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=60.8
Q ss_pred eEEEEecChhhhhHHHHHHHHhhcCC-Ce--eeeeceEEeccCCccccc---ceecCCCCCCCHHHHHHHHHHHHhCCCc
Q 007610 121 TAYLVASTVWGAMRGLETFSQLVWGN-PS--CVAVGIYVWDEPLFSHRG---LLLDTSRNYYEVDDILRTISAMSANKLN 194 (596)
Q Consensus 121 ~i~I~a~~~~G~~~gl~Tl~QL~~~~-~~--~ip~~~~I~D~P~f~~RG---~mlD~aR~f~~~~~ik~~Id~ma~~KlN 194 (596)
.|-|.|.+..---+|-+.+.+|...+ .. .-|..-+|...+.|+-=. --+|++=-+.|.+.+-++++.+...+..
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~ 81 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVK 81 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-S
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCC
Confidence 35666666554556767777776632 11 122344566656555433 4678888889999999999999999988
Q ss_pred EEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007610 195 VFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 195 ~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VI 248 (596)
.+-++.. ++-++++++|++.||+|+
T Consensus 82 ~v~~~~g-----------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 82 AVWLQPG-----------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp EEEE-TT-----------------------------S--HHHHHHHHHTT-EEE
T ss_pred EEEEEcc-----------------------------hHHHHHHHHHHHcCCEEE
Confidence 8777531 344688899999999999
No 104
>PLN02231 alanine transaminase
Probab=41.64 E-value=1.4e+02 Score=33.98 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||++++++|++.|+++|+-||-
T Consensus 286 ~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 286 QVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEE
Confidence 479999999999999999998874
No 105
>PRK07337 aminotransferase; Validated
Probab=41.28 E-value=83 Score=33.70 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEec
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIPE 250 (596)
..+|.+|+++|++.|+++|+-||-+
T Consensus 178 ~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 178 TSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred cCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3699999999999999999977743
No 106
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=40.97 E-value=74 Score=35.87 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..|+.+++++|++.|+++++-||-
T Consensus 296 ~v~~~~~l~~i~~~a~~~~~~ii~ 319 (517)
T PRK13355 296 ALYPREVLQQIVDIAREHQLIIFS 319 (517)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEEE
Confidence 379999999999999999997774
No 107
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=40.59 E-value=1.2e+02 Score=32.30 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..||.+++++|++.|+++|+-||
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 181 AVADLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred CCCCHHHHHHHHHHHHHCCcEEE
Confidence 47999999999999999999776
No 108
>TIGR03586 PseI pseudaminic acid synthase.
Probab=40.26 E-value=91 Score=33.27 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhCCCc--EEEEEeecCCcccccCCCCcc--ccccCCCCC--------CCCCCHHHHHHHHHHHHhcC
Q 007610 177 EVDDILRTISAMSANKLN--VFHWHITDSHSFPLLLPSDPN--LAAKGSYGE--------DYLYTPSDVKKIIEYGLDYG 244 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN--~lh~HltDdq~frle~~~~P~--Lt~~Ga~~~--------~~~YT~~di~eiv~yA~~rg 244 (596)
+++..|++||..+..+.+ .||.+-.|. +- .+..++ ....+.|.. .-.++.++.++|.+||+++|
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~--l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDT--IT--LDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELG 90 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHH--hh--ccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhC
Confidence 689999999999999998 456554433 11 111110 001122311 12468899999999999999
Q ss_pred CEEEeccCCCChhh
Q 007610 245 VRVVPEIDTPGHSG 258 (596)
Q Consensus 245 I~VIPEID~PGH~~ 258 (596)
|.++-+.=-..++.
T Consensus 91 i~~~stpfd~~svd 104 (327)
T TIGR03586 91 LTIFSSPFDETAVD 104 (327)
T ss_pred CcEEEccCCHHHHH
Confidence 99998765444443
No 109
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=39.91 E-value=4.3e+02 Score=27.83 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
....+++++++-+++++.||+++
T Consensus 86 ~~~~~~~~~~~g~~~~~~~irls 108 (303)
T PRK02308 86 IEPFKEELREIGEFIKEHNIRLS 108 (303)
T ss_pred CCCCHHHHHHHHHHHHHcCCCee
Confidence 35789999999999999998765
No 110
>PRK09082 methionine aminotransferase; Validated
Probab=39.75 E-value=1.2e+02 Score=32.61 Aligned_cols=24 Identities=8% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||.+++++|++.|++++|-||-
T Consensus 178 ~~~~~~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 178 TVWSAADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred cCCCHHHHHHHHHHHHHCCEEEEE
Confidence 368999999999999999998884
No 111
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=39.68 E-value=1.2e+02 Score=32.29 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=73.7
Q ss_pred eEEEEecChhhhhHHHHHHHHhhcCCCeeeeeceEEeccCCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEe
Q 007610 121 TAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIYVWDEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHI 200 (596)
Q Consensus 121 ~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~ip~~~~I~D~P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~Hl 200 (596)
.++|-|...-+++.=+.-|.|-+..- + ++.|- .++-+|.||| +++++.++..++..+-+-+
T Consensus 162 EaHlDGqGEP~lYP~l~~lVqalk~~----~-~v~vV---SmQTng~~L~-----------~~lv~eLeeAGLdRiNlSv 222 (414)
T COG2100 162 EAHLDGQGEPLLYPHLVDLVQALKEH----K-GVEVV---SMQTNGVLLS-----------KKLVDELEEAGLDRINLSV 222 (414)
T ss_pred EEEecCCCCCccchhHHHHHHHHhcC----C-CceEE---EEeeCceecc-----------HHHHHHHHHhCCceEEeec
Confidence 57899999999999999999988742 2 22222 2567899986 7899999999998877644
Q ss_pred ecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 201 TDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 201 tDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
. .-.|+++..= .....|.-+-+.++++|+.+-||.|+-
T Consensus 223 ~---------aLDpk~Ak~L--~G~~dYdv~kvle~aE~i~~a~idvlI 260 (414)
T COG2100 223 D---------ALDPKLAKML--AGRKDYDVKKVLEVAEYIANAGIDVLI 260 (414)
T ss_pred c---------cCCHHHHHHh--cCccccCHHHHHHHHHHHHhCCCCEEE
Confidence 2 1246665421 122579999999999999999999873
No 112
>PRK10626 hypothetical protein; Provisional
Probab=39.59 E-value=1.1e+02 Score=31.03 Aligned_cols=47 Identities=6% Similarity=0.141 Sum_probs=28.2
Q ss_pred CeeecCcEEEcC-CCceEEeCCceEEEeC-----CchhHHHHHHHHHHHHHhh
Q 007610 25 NVWPKPRIFSWP-KPEATNLAAEFKIQAP-----MQTQLSSAVDRYLKLIKSE 71 (596)
Q Consensus 25 ~l~P~P~~~~~~-~~~~~~l~~~~~i~~~-----~~~~l~~a~~~~~~~l~~~ 71 (596)
.|+=.|++++.. ..+.+.++++-.+... =.+.-++++.+|++.++..
T Consensus 31 DV~Itpq~v~V~~~sg~l~I~~dg~L~inGk~v~L~~~Qqq~~~~Yq~~lr~~ 83 (239)
T PRK10626 31 DVIISPQTVQVVGASGNLVISPDGNVMRNGKQLSLNAAQRQQAKDYQAALRQD 83 (239)
T ss_pred CeEEcCCeEEEEecCCceEEcCCCCEEECCEEecCCHHHHHHHHHHHHHHHHH
Confidence 444456666552 2345777665333322 1355678899999998875
No 113
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=39.16 E-value=1e+02 Score=31.65 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=38.3
Q ss_pred HHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCC
Q 007610 184 TISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPG 255 (596)
Q Consensus 184 ~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PG 255 (596)
.|+....++.+.+|+-.++ ++.+++++++++|+++|++++-|+...-
T Consensus 125 qi~~a~~~GAD~VlLi~~~-------------------------l~~~~l~~li~~a~~lGl~~lvevh~~~ 171 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA-------------------------LDDEQLKELLDYAHSLGLDVLVEVHDEE 171 (260)
T ss_pred HHHHHHHcCCCEEEEEecc-------------------------CCHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 5888888888888885432 4678999999999999999999985543
No 114
>PRK05957 aspartate aminotransferase; Provisional
Probab=39.05 E-value=1.1e+02 Score=32.80 Aligned_cols=23 Identities=9% Similarity=0.247 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..++.+++++|++.|+++|+-||
T Consensus 175 ~~~~~~~~~~i~~~a~~~~~~li 197 (389)
T PRK05957 175 VVYPEALLRAVNQICAEHGIYHI 197 (389)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEE
Confidence 46899999999999999999987
No 115
>PRK08960 hypothetical protein; Provisional
Probab=38.99 E-value=61 Score=34.79 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..++.+++++|++.|+++||-||-
T Consensus 180 ~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 180 TLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEE
Confidence 368999999999999999997774
No 116
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=38.88 E-value=4.8e+02 Score=27.91 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=81.3
Q ss_pred HHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHH
Q 007610 182 LRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWA 261 (596)
Q Consensus 182 k~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~ 261 (596)
+.+++.|+.+++|..-+++=-+ |.- .++.+.++..++.+-|++.|+.|...+ |
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~----------P~~--------~g~~~~~~~~~~akrak~~Gm~vlldf----H----- 79 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN----------PYD--------GGYNDLEDVIALAKRAKAAGMKVLLDF----H----- 79 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-----------TT--------TTTTSHHHHHHHHHHHHHTT-EEEEEE----------
T ss_pred CCHHHHHHhcCCCeEEEEeccC----------Ccc--------cccCCHHHHHHHHHHHHHCCCeEEEee----c-----
Confidence 5688899999999999987433 111 246899999999999999999999776 2
Q ss_pred hhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC-CCceecCCCCcCccccCCCHHH
Q 007610 262 GAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFP-ENFFHSGGDEILPACWKSDSLI 340 (596)
Q Consensus 262 ~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~-~~~iHiGgDEv~~~~w~~~p~~ 340 (596)
|.+.-.-+++...| ..|.. ..++-...+.+++.+++++++.+.=- -.++-||-.=-...+|....
T Consensus 80 --YSD~WaDPg~Q~~P--~aW~~--------~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~-- 145 (332)
T PF07745_consen 80 --YSDFWADPGKQNKP--AAWAN--------LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK-- 145 (332)
T ss_dssp --SSSS--BTTB-B----TTCTS--------SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC--
T ss_pred --ccCCCCCCCCCCCC--ccCCC--------CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC--
Confidence 43332211111112 12322 12344567888999999999877543 46888885433446663321
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 007610 341 QSFLSTGGTLSEVLEKFINFVFPFIVAL 368 (596)
Q Consensus 341 ~~~m~~~g~~~~l~~~f~~~~~~~l~~~ 368 (596)
..--+-+..+++.-.+-|++.
T Consensus 146 -------~~~~~~~a~ll~ag~~AVr~~ 166 (332)
T PF07745_consen 146 -------PSNWDNLAKLLNAGIKAVREV 166 (332)
T ss_dssp -------TT-HHHHHHHHHHHHHHHHTH
T ss_pred -------ccCHHHHHHHHHHHHHHHHhc
Confidence 111233566777777777763
No 117
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=38.17 E-value=1.2e+02 Score=33.42 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCcc---cccCCC----CccccccCCCCCCCCCCHHHHHHHHHHH-HhcCCEEE
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSHSF---PLLLPS----DPNLAAKGSYGEDYLYTPSDVKKIIEYG-LDYGVRVV 248 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq~f---rle~~~----~P~Lt~~Ga~~~~~~YT~~di~eiv~yA-~~rgI~VI 248 (596)
|.+...+.++..+..++|.+|+-.--.-|- +|.+.. .|.+. .+..-++.++++++|.-+ +++||-.|
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~-----~~~~~~~~~~v~~~v~~~~~~~~ll~~ 94 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFF-----PPGKESTFEDVKEFVKEAEKKYGLLSM 94 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhc-----CCCccccHHHHHHHHHHHHHHcCceEE
Confidence 356778888999999999998742111110 111111 11111 123457889999999998 47999999
Q ss_pred eccCCCChhh---hHHhhCCcch
Q 007610 249 PEIDTPGHSG---SWAGAHPEIV 268 (596)
Q Consensus 249 PEID~PGH~~---a~~~~yp~l~ 268 (596)
-.| +.-|+. .|+..|||-.
T Consensus 95 ~Dv-V~NHtA~nS~Wl~eHPEag 116 (423)
T PF14701_consen 95 TDV-VLNHTANNSPWLREHPEAG 116 (423)
T ss_pred EEE-eeccCcCCChHHHhCcccc
Confidence 887 567775 4999999863
No 118
>PRK09275 aspartate aminotransferase; Provisional
Probab=37.58 E-value=1.1e+02 Score=34.73 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHhc--CCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDY--GVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~r--gI~VIP 249 (596)
..||++++++|++.|+++ ++-||-
T Consensus 256 ~v~s~e~l~~I~~ia~~~~~~l~II~ 281 (527)
T PRK09275 256 VAMSDESLEKIADIVNEKRPDLMIIT 281 (527)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 479999999999999654 787764
No 119
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=37.12 E-value=1e+02 Score=33.23 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 173 RNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 173 R~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
+..++.+.++++|+.+...+. .+++++-. +.+...|+.+|+++++++|+.+ .|.
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~--~~v~~~GG----------------------EPll~~~~~~il~~~~~~g~~~--~i~ 96 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGA--LQLHFSGG----------------------EPLLRKDLEELVAHARELGLYT--NLI 96 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCC--cEEEEECC----------------------ccCCchhHHHHHHHHHHcCCcE--EEE
Confidence 456889999999999987764 44444321 2344567999999999999865 366
Q ss_pred CCChh
Q 007610 253 TPGHS 257 (596)
Q Consensus 253 ~PGH~ 257 (596)
|=|..
T Consensus 97 TNG~l 101 (378)
T PRK05301 97 TSGVG 101 (378)
T ss_pred CCCcc
Confidence 66653
No 120
>PRK08068 transaminase; Reviewed
Probab=36.95 E-value=84 Score=33.71 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..||++++++|++.|+++++-||
T Consensus 182 ~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 182 AVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEE
Confidence 47999999999999999999877
No 121
>PRK11627 hypothetical protein; Provisional
Probab=36.13 E-value=3e+02 Score=27.08 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=5.0
Q ss_pred ceEEEEEcC
Q 007610 90 QTLSISVDN 98 (596)
Q Consensus 90 ~~i~i~v~~ 98 (596)
..+.|.|..
T Consensus 101 ~~l~v~i~~ 109 (192)
T PRK11627 101 VNLQIIVNQ 109 (192)
T ss_pred ceEEEEHHH
Confidence 456666543
No 122
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=35.91 E-value=1.4e+02 Score=31.76 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..||.+++++|++.|+++|+-||
T Consensus 179 ~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 179 AVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred ccCCHHHHHHHHHHHHHcCEEEE
Confidence 36999999999999999999777
No 123
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=35.83 E-value=82 Score=34.02 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEE--EEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 177 EVDDILRTISAMSANKLNVFH--WHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh--~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
+.+..+++|+.|+.+++..+- +|+.++ . ..-..+++++|.++|+++|++||..|.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~---------~------------~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPED---------D------------PEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCC---------C------------HHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 688999999999999998553 343221 0 012578999999999999999999884
No 124
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=35.67 E-value=22 Score=39.61 Aligned_cols=44 Identities=20% Similarity=0.365 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCEEEe------------------ccCCCChhhhHHhhCCcchhcccc
Q 007610 230 PSDVKKIIEYGLDYGVRVVP------------------EIDTPGHSGSWAGAHPEIVSCANK 273 (596)
Q Consensus 230 ~~di~eiv~yA~~rgI~VIP------------------EID~PGH~~a~~~~yp~l~~~~~~ 273 (596)
++|+-+=.+.-++|||+|=- -||||||...--..-..|..|.+.
T Consensus 42 ~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGa 103 (603)
T COG0481 42 RAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGA 103 (603)
T ss_pred HHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCc
Confidence 45566667888999998743 499999997643333446667543
No 125
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=35.39 E-value=5.2e+02 Score=27.41 Aligned_cols=120 Identities=16% Similarity=0.234 Sum_probs=70.8
Q ss_pred ceEEeccCCcccccc-eecC-----CCCCC-------------CHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCC
Q 007610 153 GIYVWDEPLFSHRGL-LLDT-----SRNYY-------------EVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSD 213 (596)
Q Consensus 153 ~~~I~D~P~f~~RG~-mlD~-----aR~f~-------------~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~ 213 (596)
.+.+.+.|+.+.|=+ +.|- =|.|- ..+.++++-+.+|..++|-.-+--....+.
T Consensus 12 ~~~~~~~P~~~~R~lNhWDN~dgsiERGYaG~Sif~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~~------- 84 (328)
T PF07488_consen 12 GLDIVENPKAPLRMLNHWDNLDGSIERGYAGKSIFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANPK------- 84 (328)
T ss_dssp T-EEEE--SSSEEEEE--B-TTS-BTT--SSS-SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--CG-------
T ss_pred CCccccCCCcceeecccccCCCCceecccCcccccccCCCcccchhHHHHHHHHHhhcCCceEEecccccChh-------
Confidence 678999999999966 3332 23321 246788889999999999888754333221
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCC
Q 007610 214 PNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTG 293 (596)
Q Consensus 214 P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 293 (596)
.|+. . -.++++.|.+-.+.+||+|--.++.-+-.. | ..-.
T Consensus 85 -~Lt~--~-------~l~~v~~lAdvfRpYGIkv~LSvnFasP~~--------l----------------------ggL~ 124 (328)
T PF07488_consen 85 -LLTP--E-------YLDKVARLADVFRPYGIKVYLSVNFASPIE--------L----------------------GGLP 124 (328)
T ss_dssp -GGST--T-------THHHHHHHHHHHHHTT-EEEEEE-TTHHHH--------T----------------------TS-S
T ss_pred -hcCH--H-------HHHHHHHHHHHHhhcCCEEEEEeeccCCcc--------c----------------------CCcC
Confidence 1221 1 256889999999999999997775321110 1 0113
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhCCC
Q 007610 294 QLNPLHPKTFGVMINVLENVASIFPE 319 (596)
Q Consensus 294 ~L~p~~~~t~~f~~~v~~Ev~~lF~~ 319 (596)
+.||.+|++.++-++..+|+-+.+|+
T Consensus 125 TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 125 TADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999986
No 126
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=35.36 E-value=1e+02 Score=33.30 Aligned_cols=24 Identities=4% Similarity=0.241 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..+|.+++++|++.|+++|+-||=
T Consensus 183 ~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 183 SVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 368999999999999999998873
No 127
>PRK08363 alanine aminotransferase; Validated
Probab=34.36 E-value=1.1e+02 Score=33.06 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..++.+++++|++.|+++|+-||=
T Consensus 181 ~~~~~~~~~~l~~~a~~~~~~li~ 204 (398)
T PRK08363 181 ALYEKKTLKEILDIAGEHDLPVIS 204 (398)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEEE
Confidence 368999999999999999987773
No 128
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=34.25 E-value=1.1e+02 Score=33.74 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCC---cccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCC
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDSH---SFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTP 254 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDdq---~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~P 254 (596)
+.-|.+-+|.+..++++.+++=-.-.. --++.+..|-++. ..+=|.+|++++++-|.+|||.||..+- .
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id-------~~~Gt~~d~~~li~~~H~~gi~vi~D~V-~ 99 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVD-------PHFGTEEDFKELVEEAHKRGIKVILDLV-F 99 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcC-------cccCCHHHHHHHHHHHHHCCCEEEEEec-c
Confidence 555668889999999999987322110 0001111111110 1233899999999999999999999873 5
Q ss_pred Chhhh
Q 007610 255 GHSGS 259 (596)
Q Consensus 255 GH~~a 259 (596)
-|++.
T Consensus 100 NH~s~ 104 (505)
T COG0366 100 NHTSD 104 (505)
T ss_pred CcCCC
Confidence 56643
No 129
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=33.98 E-value=1e+02 Score=32.80 Aligned_cols=59 Identities=8% Similarity=0.186 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 173 RNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 173 R~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
+..++.+.++++|+.+...+. ..++++-. +..-..|+.+|++||+++|+.+ .|.
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~--~~v~~~GG----------------------EPll~~~~~~ii~~~~~~g~~~--~l~ 87 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGV--LQLHFSGG----------------------EPLARPDLVELVAHARRLGLYT--NLI 87 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCC--cEEEEeCc----------------------cccccccHHHHHHHHHHcCCeE--EEE
Confidence 456899999999999987765 34444421 2233457889999999999865 466
Q ss_pred CCChh
Q 007610 253 TPGHS 257 (596)
Q Consensus 253 ~PGH~ 257 (596)
|-|..
T Consensus 88 TNG~l 92 (358)
T TIGR02109 88 TSGVG 92 (358)
T ss_pred eCCcc
Confidence 76764
No 130
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=33.93 E-value=72 Score=31.98 Aligned_cols=64 Identities=11% Similarity=0.186 Sum_probs=51.9
Q ss_pred cccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHH
Q 007610 162 FSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGL 241 (596)
Q Consensus 162 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~ 241 (596)
|..=|+++|+...- +.+.+.++++.......+.+-.-. ..+ .++|++|+.++.+|+.
T Consensus 132 ~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv-----------------Nl~-----~YLt~eei~el~~~i~ 188 (216)
T TIGR01866 132 IKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI-----------------NSG-----AFLTKDELAELQKFIS 188 (216)
T ss_pred HHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE-----------------cHH-----HhCCHHHHHHHHHHHH
Confidence 56789999999876 889999999988887777655422 122 4699999999999999
Q ss_pred hcCCEEE
Q 007610 242 DYGVRVV 248 (596)
Q Consensus 242 ~rgI~VI 248 (596)
...+.|+
T Consensus 189 ~~~~~vl 195 (216)
T TIGR01866 189 YTKLTVL 195 (216)
T ss_pred HhcccEE
Confidence 9999887
No 131
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=33.70 E-value=1.8e+02 Score=31.98 Aligned_cols=66 Identities=18% Similarity=0.353 Sum_probs=47.0
Q ss_pred ceecCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 007610 167 LLLDTSRNY-YEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGV 245 (596)
Q Consensus 167 ~mlD~aR~f-~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI 245 (596)
++++.+-+| +.++.+..-.........+|==+=++. |+-|. | ..||++++..++.+|.+.+|
T Consensus 198 v~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitN--------PsNPL----G-----~~~~~e~L~~ll~Fa~~kni 260 (471)
T KOG0256|consen 198 VHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITN--------PSNPL----G-----TTLSPEELISLLNFASRKNI 260 (471)
T ss_pred EEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeC--------CCCCC----C-----CccCHHHHHHHHHHHhhcce
Confidence 456666666 567777777666666666655554443 44442 2 36999999999999999999
Q ss_pred EEEe
Q 007610 246 RVVP 249 (596)
Q Consensus 246 ~VIP 249 (596)
.||-
T Consensus 261 HvI~ 264 (471)
T KOG0256|consen 261 HVIS 264 (471)
T ss_pred EEEe
Confidence 9986
No 132
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.35 E-value=1.2e+02 Score=30.69 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
.++.+++.|+..+..+...+.+|.... ++. ....+. | .-..+-+++|.++|+++||++.-|--
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~---~~~~~~-----~----~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-GYL---TPPNVI-----W----GRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-CCC---CCHHHH-----H----HHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 467899999999999999999986532 211 000000 0 01345699999999999999998853
No 133
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=32.39 E-value=49 Score=29.85 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCEEEeccCCCChhh
Q 007610 229 TPSDVKKIIEYGLDYGVRVVPEIDTPGHSG 258 (596)
Q Consensus 229 T~~di~eiv~yA~~rgI~VIPEID~PGH~~ 258 (596)
|.+|+++++++|+++++.|.+- .-||..
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~--g~G~~~ 36 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVR--GGGHSW 36 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE--SSSTTS
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--cCCCCc
Confidence 7899999999999999999986 345553
No 134
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.34 E-value=65 Score=32.13 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccc--cC-CCCccccccCCCCCCCCCCHHHH-----------------HH
Q 007610 176 YEVDDILRTISAMSANKLNVFHWHITDSHSFPL--LL-PSDPNLAAKGSYGEDYLYTPSDV-----------------KK 235 (596)
Q Consensus 176 ~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frl--e~-~~~P~Lt~~Ga~~~~~~YT~~di-----------------~e 235 (596)
.+.+...++++.+...++..+-+-++..++... ++ +.||++. .|+ +...|.+|. .+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~-IGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~ 99 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEAL-IGA---GTVLNPEQLAQAIEAGAQFIVSPGLTPP 99 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCE-EEE---eeccCHHHHHHHHHcCCCEEECCCCCHH
Confidence 367889999999999999999998887765542 11 3567653 454 234455543 37
Q ss_pred HHHHHHhcCCEEEeccCCCChhhhHH
Q 007610 236 IIEYGLDYGVRVVPEIDTPGHSGSWA 261 (596)
Q Consensus 236 iv~yA~~rgI~VIPEID~PGH~~a~~ 261 (596)
++++|++++|.+||.+-+|.-...+.
T Consensus 100 vi~~a~~~~i~~iPG~~TptEi~~a~ 125 (212)
T PRK05718 100 LLKAAQEGPIPLIPGVSTPSELMLGM 125 (212)
T ss_pred HHHHHHHcCCCEeCCCCCHHHHHHHH
Confidence 89999999999999999998755433
No 135
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=31.86 E-value=1.1e+02 Score=32.58 Aligned_cols=97 Identities=20% Similarity=0.345 Sum_probs=64.3
Q ss_pred CeEEEEecChhhhhHHHHHHHHhhcCCCeeeeeceEEeccCCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 007610 120 NTAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIYVWDEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWH 199 (596)
Q Consensus 120 ~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~ip~~~~I~D~P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~H 199 (596)
+++.|.+-...|.+---.-..||-..+--.+...+.--| |+.+ |-+ .+|..|.++.++++++.++..|+++|---
T Consensus 188 ~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLD-pk~A-k~L---~G~~dYdv~kvle~aE~i~~a~idvlIaP 262 (414)
T COG2100 188 KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALD-PKLA-KML---AGRKDYDVKKVLEVAEYIANAGIDVLIAP 262 (414)
T ss_pred CCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCC-HHHH-HHh---cCccccCHHHHHHHHHHHHhCCCCEEEee
Confidence 356777777777776555566665532212331221112 3322 222 47889999999999999999999998753
Q ss_pred eecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcC
Q 007610 200 ITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYG 244 (596)
Q Consensus 200 ltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rg 244 (596)
+ -+| | |-.+|+..||++|++.|
T Consensus 263 v--------~lP--------G-------~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 263 V--------WLP--------G-------VNDDEMPKIIEWAREIG 284 (414)
T ss_pred e--------ecC--------C-------cChHHHHHHHHHHHHhC
Confidence 2 122 2 67899999999999998
No 136
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=31.17 E-value=88 Score=32.80 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=39.9
Q ss_pred HHH-HHHHHHHHHhCCCcEEEEEeecCCccc--ccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 178 VDD-ILRTISAMSANKLNVFHWHITDSHSFP--LLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 178 ~~~-ik~~Id~ma~~KlN~lh~HltDdq~fr--le~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
++. -|.+++.+|.+=-|..-.-+-+. || +....||++.. .+|.+|+.+.++||++.|++-+.
T Consensus 269 lecCTkpI~~wiae~~g~~~~vNiM~Q--Y~P~ykA~eypeI~R--------~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 269 LECCTKPILRWIAENLGNDVRVNIMFQ--YRPEYKAEEYPEINR--------RLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred hhhccHHHHHHHHHhCCCCeeEEehhh--ccchhhhhhchhhcc--------cCCHHHHHHHHHHHHHcCCceee
Confidence 444 46677777765443333322221 11 22345788863 59999999999999999998663
No 137
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.06 E-value=81 Score=31.24 Aligned_cols=82 Identities=12% Similarity=0.210 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccccc---CCCCccccccCCCCCCCCCCHHHH-----------------HHH
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSHSFPLL---LPSDPNLAAKGSYGEDYLYTPSDV-----------------KKI 236 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle---~~~~P~Lt~~Ga~~~~~~YT~~di-----------------~ei 236 (596)
+.+...++++.|..-++..+.+-++..+....= .+.||++. .|+ ...+|.++. .++
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~-vGA---GTVl~~e~a~~ai~aGA~FivSP~~~~~v 89 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAI-VGA---GTILNAKQFEDAAKAGSRFIVSPGTTQEL 89 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCE-Eee---EeCcCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 788999999999999999999998876554310 13567654 565 246666665 468
Q ss_pred HHHHHhcCCEEEeccCCCChhhhHHh
Q 007610 237 IEYGLDYGVRVVPEIDTPGHSGSWAG 262 (596)
Q Consensus 237 v~yA~~rgI~VIPEID~PGH~~a~~~ 262 (596)
+++|+++||-+||-.=||.-......
T Consensus 90 i~~a~~~~i~~iPG~~TptEi~~A~~ 115 (201)
T PRK06015 90 LAAANDSDVPLLPGAATPSEVMALRE 115 (201)
T ss_pred HHHHHHcCCCEeCCCCCHHHHHHHHH
Confidence 89999999999999999987755433
No 138
>PRK01060 endonuclease IV; Provisional
Probab=30.99 E-value=1.7e+02 Score=29.76 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=44.5
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 007610 166 GLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGV 245 (596)
Q Consensus 166 G~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI 245 (596)
|+|..+.+. +.+.|+.++..++..+.+-+.....|. ...+|.++++++-+.++++||
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~-----------------~~~~~~~~~~~lk~~~~~~gl 61 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK-----------------RKPLEELNIEAFKAACEKYGI 61 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 555555543 788999999999999998654322221 124799999999999999999
Q ss_pred EE
Q 007610 246 RV 247 (596)
Q Consensus 246 ~V 247 (596)
++
T Consensus 62 ~~ 63 (281)
T PRK01060 62 SP 63 (281)
T ss_pred CC
Confidence 85
No 139
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.88 E-value=67 Score=31.87 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccc---ccCCCCccccccCCCCCCCCCCHHHH-----------------HHH
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSHSFP---LLLPSDPNLAAKGSYGEDYLYTPSDV-----------------KKI 236 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq~fr---le~~~~P~Lt~~Ga~~~~~~YT~~di-----------------~ei 236 (596)
+.+...++.+.+...++..+.+-++...... --.+.||++. .|+ ...+|.++. .++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~-vGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v 93 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDAL-IGA---GTVLNPEQLRQAVDAGAQFIVSPGLTPEL 93 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCE-EEE---EeCCCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 7899999999999999999999887654432 1124577654 455 235555554 478
Q ss_pred HHHHHhcCCEEEeccCCCChhhhHHh
Q 007610 237 IEYGLDYGVRVVPEIDTPGHSGSWAG 262 (596)
Q Consensus 237 v~yA~~rgI~VIPEID~PGH~~a~~~ 262 (596)
+++|+++||-++|-+=+|........
T Consensus 94 ~~~~~~~~i~~iPG~~TptEi~~A~~ 119 (204)
T TIGR01182 94 AKHAQDHGIPIIPGVATPSEIMLALE 119 (204)
T ss_pred HHHHHHcCCcEECCCCCHHHHHHHHH
Confidence 89999999999999999998876544
No 140
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.48 E-value=1.2e+02 Score=32.38 Aligned_cols=77 Identities=9% Similarity=0.119 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhCCCc--EEEEEeecCCcccccCCCCcc--ccccCCCC--------CCCCCCHHHHHHHHHHHHhcC
Q 007610 177 EVDDILRTISAMSANKLN--VFHWHITDSHSFPLLLPSDPN--LAAKGSYG--------EDYLYTPSDVKKIIEYGLDYG 244 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN--~lh~HltDdq~frle~~~~P~--Lt~~Ga~~--------~~~~YT~~di~eiv~yA~~rg 244 (596)
+++.-|++||..+..+.. .||.+..|.. -.+..+. ......|. ..-.++.+++++|.+||++.|
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDL----VSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKG 89 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHh----hCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 689999999999999988 5565544431 1111111 00001111 113578999999999999999
Q ss_pred CEEEeccCCCChh
Q 007610 245 VRVVPEIDTPGHS 257 (596)
Q Consensus 245 I~VIPEID~PGH~ 257 (596)
|.++-+.=-.-+.
T Consensus 90 i~~~stpfd~~sv 102 (329)
T TIGR03569 90 IEFLSTPFDLESA 102 (329)
T ss_pred CcEEEEeCCHHHH
Confidence 9998775433333
No 141
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=30.45 E-value=50 Score=35.75 Aligned_cols=26 Identities=42% Similarity=0.668 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe-cc
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP-EI 251 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP-EI 251 (596)
..+|++|++.|.+.|+++||+||- ||
T Consensus 173 rvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 173 RVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 489999999999999999999997 55
No 142
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=30.36 E-value=3.9e+02 Score=28.25 Aligned_cols=110 Identities=19% Similarity=0.310 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEE--EeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCC
Q 007610 178 VDDILRTISAMSANKLNVFHW--HITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPG 255 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~--HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PG 255 (596)
-+.+++++..-. +-.|-|.| -+.+..+=+-++++.|.. | .||.+++.+-++-+...||..|--+=+|-
T Consensus 16 ~~~~R~lv~Et~-L~~~dLI~PiFV~eg~~~~~~I~SMPgv-----~----r~s~d~l~~~~~~~~~lGi~av~LFgvp~ 85 (330)
T COG0113 16 SPALRRLVRETR-LTPNDLIYPIFVVEGENIKEEIPSMPGV-----Y----RYSLDRLVEEAEELVDLGIPAVILFGVPD 85 (330)
T ss_pred CHHHHHHHHhcC-CCHHHeeEeEEEecCCCCccccCCCCCc-----e----eccHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 355555554322 22233333 344455556677777743 3 48999999999999999999999988885
Q ss_pred hh--h------------------hHHhhCCcchh----ccccCcCCCCCccccccccCCCCCcCC----CCChhHHHHHH
Q 007610 256 HS--G------------------SWAGAHPEIVS----CANKFWWPAGTKWEDRLASEPGTGQLN----PLHPKTFGVMI 307 (596)
Q Consensus 256 H~--~------------------a~~~~yp~l~~----~~~~~~~~~~~~w~~~~~~~~~~~~L~----p~~~~t~~f~~ 307 (596)
|. . ++.+.+|+|.. |...| -....||.++ +.|++|.+.+.
T Consensus 86 ~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLcey------------T~HGHcGil~~~~~V~ND~Tle~l~ 153 (330)
T COG0113 86 DSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEY------------TDHGHCGILDDGGYVDNDETLEILA 153 (330)
T ss_pred ccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCC------------cCCCccccccCCCeecchHHHHHHH
Confidence 52 1 12235788743 43322 1122456663 67899998776
Q ss_pred HH
Q 007610 308 NV 309 (596)
Q Consensus 308 ~v 309 (596)
++
T Consensus 154 k~ 155 (330)
T COG0113 154 KQ 155 (330)
T ss_pred HH
Confidence 54
No 143
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=30.25 E-value=6.9e+02 Score=26.56 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCC-CCCCCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 174 NYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYG-EDYLYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 174 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~-~~~~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
++.+-+.++++++.+...++..=.+++-.+ |- ..+ +.+. +...|..-..+++|+.-+++||+|++-|+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~--~~---~~~------~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDID--YM---DRR------RDFTLDPVRFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcc--cc---cCc------cceecccccCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 456899999999999999998655555322 21 111 1111 01123322338899999999999999875
Q ss_pred CCChhhh-HHhhCCcchhccc-cCcC--CCCCccccccccCC-CCCcCCCCChhHHHHHHHHHHHHHHh
Q 007610 253 TPGHSGS-WAGAHPEIVSCAN-KFWW--PAGTKWEDRLASEP-GTGQLNPLHPKTFGVMINVLENVASI 316 (596)
Q Consensus 253 ~PGH~~a-~~~~yp~l~~~~~-~~~~--~~~~~w~~~~~~~~-~~~~L~p~~~~t~~f~~~v~~Ev~~l 316 (596)
|+-... -...|+.+..+.. .+.+ .++.++.. ...+ ....+|.+||++.+...+.++++.+-
T Consensus 88 -P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~--~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 153 (339)
T cd06602 88 -PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIG--KVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ 153 (339)
T ss_pred -CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEE--EeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc
Confidence 443211 0011221111100 0000 01111000 0011 12458999999999999988886653
No 144
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=30.20 E-value=1.2e+02 Score=25.50 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCCCCCCCcceEEEEecCCCeEEEEecChhhhhHHHHHHH
Q 007610 91 TLSISVDNISVPLTHGVNESYSLTITSDENTAYLVASTVWGAMRGLETFS 140 (596)
Q Consensus 91 ~i~i~v~~~~~~l~~~~~E~Y~L~i~~~~~~i~I~a~~~~G~~~gl~Tl~ 140 (596)
.+.+.+.+.. .+.+.|+|.-+ ++++|+|+|++..-+.+|+..-+
T Consensus 19 ~f~~~~~~~~-----~~~d~F~l~~~-~~gki~I~G~s~vala~Gl~~YL 62 (86)
T PF12971_consen 19 QFTFELIPSS-----NGKDVFELSSA-DNGKIVIRGNSGVALASGLNWYL 62 (86)
T ss_dssp GEEEEE---B-----TTBEEEEEEE--SSS-EEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEecCC-----CCCCEEEEEeC-CCCeEEEEeCCHHHHHHHHHHHH
Confidence 3666665432 14688999872 26789999999999999997643
No 145
>PRK09148 aminotransferase; Validated
Probab=30.03 E-value=72 Score=34.59 Aligned_cols=23 Identities=9% Similarity=0.254 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..||.+++++|++.|+++|+-||
T Consensus 180 ~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 180 YVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 47999999999999999998777
No 146
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=80 Score=35.87 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHH---HHHHHHHHHhcCCEEEe
Q 007610 173 RNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSD---VKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 173 R~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~d---i~eiv~yA~~rgI~VIP 249 (596)
.+.+.++.-|.+.+.+...+||+.-.-..||---| .++ ++-|+.+| ++.||+-|++.||+.|=
T Consensus 27 GRPWt~EQRK~LFrrl~~~gl~tYlYAPKDDyKHR-------~~W-------RElY~vEEa~~L~~Li~aAke~~i~F~Y 92 (891)
T KOG3698|consen 27 GRPWTPEQRKHLFRRLNQLGLTTYLYAPKDDYKHR-------SLW-------RELYNVEEATYLRNLIEAAKENNINFVY 92 (891)
T ss_pred CCCCCHHHHHHHHHHHHhcccceeeecccchhHHH-------HHH-------HHHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence 56677899999999999999999988888873221 122 14577665 78899999999999997
Q ss_pred ccCCCCh
Q 007610 250 EIDTPGH 256 (596)
Q Consensus 250 EID~PGH 256 (596)
-| +||-
T Consensus 93 Ai-SPGl 98 (891)
T KOG3698|consen 93 AI-SPGL 98 (891)
T ss_pred Ec-CCCc
Confidence 66 4553
No 147
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=29.79 E-value=1.4e+02 Score=31.09 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCC-cccccCCCCccccccCCCCCCCCCC------HHHHHHHHHHHHhcCCEEE
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSH-SFPLLLPSDPNLAAKGSYGEDYLYT------PSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq-~frle~~~~P~Lt~~Ga~~~~~~YT------~~di~eiv~yA~~rgI~VI 248 (596)
..+..+.+++..+..++|+++.-+.-.. +..-. ..+|...-.+.-....-+| =+.+..+|++|.++||.+-
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~-n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP-NRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc-ccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 4578899999999999999999876431 11110 1222222111000000111 3568999999999999875
No 148
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=29.56 E-value=1.1e+02 Score=33.82 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred EeccCCcccccceecCCCCC---CCHH---HHHHHHHHHHhCCC--cEEEEEeecCCc-ccccCCCCccccccCCCCCCC
Q 007610 156 VWDEPLFSHRGLLLDTSRNY---YEVD---DILRTISAMSANKL--NVFHWHITDSHS-FPLLLPSDPNLAAKGSYGEDY 226 (596)
Q Consensus 156 I~D~P~f~~RG~mlD~aR~f---~~~~---~ik~~Id~ma~~Kl--N~lh~HltDdq~-frle~~~~P~Lt~~Ga~~~~~ 226 (596)
|.+.+++ |+.||++.-| +.+. .+.++++.+-..-- .+-|+|+.|+.+ +.=..+.+-.+-. |
T Consensus 297 v~~~~rl---GvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS~~DRH~~IG~-------G 366 (413)
T PTZ00372 297 VEDKSRV---GVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGSGLDRHENIGK-------G 366 (413)
T ss_pred cCCcCCe---EEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCCCcccccCcCC-------C
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEec
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPE 250 (596)
..-.+-++.|+...+-.+|-+|-|
T Consensus 367 ~Ig~~~f~~l~~~~~~~~iP~ILE 390 (413)
T PTZ00372 367 KLGMETFKFIMNSKYFKNIPIILE 390 (413)
T ss_pred CcChHHHHHHHhChhhCCCeEEEe
No 149
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=28.23 E-value=31 Score=36.28 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=70.5
Q ss_pred CcceEEEEecCCCeEEEEecChhhhhHHHHHHHHhhc-C--CCeeeeeceEEeccCCc-ccccceecCCCCCCCHHHHHH
Q 007610 108 NESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVW-G--NPSCVAVGIYVWDEPLF-SHRGLLLDTSRNYYEVDDILR 183 (596)
Q Consensus 108 ~E~Y~L~i~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~-~--~~~~ip~~~~I~D~P~f-~~RG~mlD~aR~f~~~~~ik~ 183 (596)
.+.|.+.++ ...|.|+-.+..++||..--|---.. | ..+.+| =+|.| .|-++.||- -+|++..-=.+
T Consensus 88 ~~~ygwnit--~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illP------LaPeYiGY~d~~l~~-d~fVs~kP~ie 158 (417)
T COG3977 88 RREYGWNIT--AQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLP------LAPEYIGYADAGLEE-DLFVSAKPNIE 158 (417)
T ss_pred HHHhCCCCc--cceeeecCCccchHHHHHHHhcCccCCCcceeEeec------cChhhccccccccCc-cceeeccCCcc
Confidence 577999998 56799999999999997765533322 1 112233 23333 244444443 24544222122
Q ss_pred HHH-HHHhCCCcEEEEEeecCCcccccC-CCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 007610 184 TIS-AMSANKLNVFHWHITDSHSFPLLL-PSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 184 ~Id-~ma~~KlN~lh~HltDdq~frle~-~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPE 250 (596)
+++ ..-.|....=|+|+.++-|--.-+ |.-| . +.++|.+|++.|.+.|+++||-+|-.
T Consensus 159 l~~~g~FKY~vDF~~l~i~e~~g~ic~SRPtNP----T-----GNVlTdeE~~kldalA~~~giPliID 218 (417)
T COG3977 159 LLPAGQFKYHVDFEHLHIGESTGAICVSRPTNP----T-----GNVLTDEELAKLDALARQHGIPLIID 218 (417)
T ss_pred cccccceeeccCHHHcccccccceEEecCCCCC----C-----CCcccHHHHHHHHHHhhhcCCcEEEe
Confidence 222 111233334456665543321111 1111 1 35899999999999999999999853
No 150
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.98 E-value=1.1e+02 Score=31.16 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
++.+++.|+.++..+.+++.++-.+ .. +...... .-....+-+++++++|+++||+|.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~-----~~---~~~~~~~-----~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYD-----VY---YEEHDEE-----TRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcc-----cc---cCcCCHH-----HHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 6779999999999999998775311 10 0000000 011346789999999999999999994
No 151
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=27.91 E-value=1.1e+03 Score=27.97 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCC---cccccCCCCcc--ccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDSH---SFPLLLPSDPN--LAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDdq---~frle~~~~P~--Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
.+.|-.+||.|...|+|++-++.--+. |. +.+.=+|. |+ | ....|++=.. +.|.++|++|---+.
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~-~~s~yfP~~~lp--~---r~d~f~~~aw----~l~~r~~v~v~AWmp 402 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGL-VKELYFPNRLLP--M---RADLFNRVAW----QLRTRAGVNVYAWMP 402 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCcc-ccccccCccccc--c---ccCCcCHHHH----HHHHhhCCEEEEecc
Confidence 467888999999999999999872221 11 11111221 11 0 0122333221 238899999986655
Q ss_pred CCChhhhHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCceecCCC
Q 007610 253 TPGHSGSWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVASIFPENFFHSGGD 327 (596)
Q Consensus 253 ~PGH~~a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~lF~~~~iHiGgD 327 (596)
+-+=.. ....|....- + +.+.+ ... .......|+|.+|++.++|.+|+.|+..-.+-.=||.=-|
T Consensus 403 ~~~~~~--~~~~~~~~~~-~----~~~~~--~~~-~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd 467 (671)
T PRK14582 403 VLSFDL--DPTLPRVKRL-D----TGEGK--AQI-HPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDD 467 (671)
T ss_pred ceeecc--CCCcchhhhc-c----ccCCc--ccc-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEeccc
Confidence 443211 0011111000 0 00000 000 0001235999999999999999999999766554554433
No 152
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.56 E-value=1.3e+02 Score=30.43 Aligned_cols=103 Identities=10% Similarity=-0.046 Sum_probs=59.5
Q ss_pred HHHHHHHhhcCCCeeeeeceEE-eccCCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCC
Q 007610 135 GLETFSQLVWGNPSCVAVGIYV-WDEPLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSD 213 (596)
Q Consensus 135 gl~Tl~QL~~~~~~~ip~~~~I-~D~P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~ 213 (596)
.++.+++++...+..+. ...+ ........|++-+|.++.-.-.+.+++.|+.+...+...+..+.- +. . ..+
T Consensus 41 ~~~~~~~~l~~~gl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g----~~-~-~~~ 113 (258)
T PRK09997 41 DIEELKQVLASNKLEHT-LHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVG----KT-P-AGF 113 (258)
T ss_pred CHHHHHHHHHHcCCcEE-EEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCC----CC-C-CCC
Confidence 36777777764443332 1111 111123355655555543223577899999999999998776531 10 0 000
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 214 PNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 214 P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
...-.+ ....+.++++.++|+++||++.-|-
T Consensus 114 ---~~~~~~----~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 114 ---SSEQIH----ATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred ---CHHHHH----HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 000000 1346778999999999999999983
No 153
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=27.26 E-value=6e+02 Score=26.08 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEE-----EeccccccCCcccCCCCCCCCCeEEEEeCCCchhHHHHHHcCCeEEE
Q 007610 353 VLEKFINFVFPFIVALDKTAI-----YWEDVILDNEIKVDPSYLYPEYTIFQSWKNGTESTKKIVQAGYRVIV 420 (596)
Q Consensus 353 l~~~f~~~~~~~l~~~gk~~i-----~W~d~~~~~~~~~~~~~lp~~~~iv~~W~~~~~~~~~~~~~G~~vI~ 420 (596)
.+..++.+-.+..++.++-++ .|+|.+. .+.....+ ...|++.++++.+.++++.+.||-+=.
T Consensus 109 ~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~----iL~~~~~~-~~gi~HcFsGs~e~a~~~~d~G~yisi 176 (256)
T COG0084 109 RQEEVFEAQLELAKELNLPVIIHTRDAHEDTLE----ILKEEGAP-VGGVLHCFSGSAEEARKLLDLGFYISI 176 (256)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccHHHHHH----HHHhcCCC-CCEEEEccCCCHHHHHHHHHcCeEEEE
Confidence 345555555667777776554 4555442 01111123 577888888877889999999944433
No 154
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=27.15 E-value=4.2e+02 Score=27.95 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..++.+++++|++.|+++|+-||=
T Consensus 157 ~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 157 LLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Confidence 368999999999999999998874
No 155
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=27.00 E-value=1.5e+02 Score=32.05 Aligned_cols=24 Identities=17% Similarity=0.456 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..++.+++++|++.|+++|+-||=
T Consensus 184 ~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 184 SVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 368999999999999999998874
No 156
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=26.95 E-value=2.9e+02 Score=29.31 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCC
Q 007610 174 NYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDT 253 (596)
Q Consensus 174 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~ 253 (596)
.+.+-+.++++++.+..+++-+=.+++-++ |- ..+..++ |.+ ..|. |.+++++..+++|++|++-++-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~----~d~-~~fP--dp~~m~~~l~~~g~~~~~~~~P 86 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDID--YM---DGYRVFT----WDK-ERFP--DPKELIKELHEQGFKVVTIIDP 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECch--hh---CCCCcee----ecc-ccCC--CHHHHHHHHHHCCCEEEEEEeC
Confidence 456789999999999999988655555322 21 1111111 111 1233 5688999999999999976642
Q ss_pred -----CChhh-hHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHHHHH
Q 007610 254 -----PGHSG-SWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLENVAS 315 (596)
Q Consensus 254 -----PGH~~-a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~Ev~~ 315 (596)
++... .-....--+.. + .+++++... .-......+|.+||++.++..++++++.+
T Consensus 87 ~v~~~~~~~~~~e~~~~g~~v~--~----~~g~~~~~~-~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06604 87 GVKVDPGYDVYEEGLENDYFVK--D----PDGELYIGR-VWPGLSAFPDFTNPKVREWWGSLYKKFVD 147 (339)
T ss_pred ceeCCCCChHHHHHHHCCeEEE--C----CCCCEEEEE-ecCCCccccCCCChHHHHHHHHHHHHHhh
Confidence 11110 00110000100 0 111111000 00012346899999999999999988764
No 157
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.83 E-value=1.4e+02 Score=30.55 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEeccC
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPEID 252 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPEID 252 (596)
..+.++..++|+.|+++|..|+||+=
T Consensus 109 ~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 109 DLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp ---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred eCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 36899999999999999999999984
No 158
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=26.47 E-value=5.9e+02 Score=26.74 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCC
Q 007610 174 NYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDT 253 (596)
Q Consensus 174 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~ 253 (596)
++.+-+.++++++.+..+++-+=.+++-++ | .+.+-..+ |.+ ..|. |.+++++..+++||+|++-|+
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~---~~~~~~f~----~d~-~~FP--dp~~~i~~l~~~g~k~~~~~~- 85 (317)
T cd06600 19 SYYPQDKVVEVVDIMQKEGFPYDVVFLDIH--Y---MDSYRLFT----WDP-YRFP--EPKKLIDELHKRNVKLVTIVD- 85 (317)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceEEEChh--h---hCCCCcee----ech-hcCC--CHHHHHHHHHHCCCEEEEEee-
Confidence 456789999999999999998666665322 1 01111111 111 1222 567999999999999998764
Q ss_pred CChh-----hhHHhhC-CcchhccccCcCCCCCccccccccCCC-CCcCCCCChhHHHHHHHHHHHHH
Q 007610 254 PGHS-----GSWAGAH-PEIVSCANKFWWPAGTKWEDRLASEPG-TGQLNPLHPKTFGVMINVLENVA 314 (596)
Q Consensus 254 PGH~-----~a~~~~y-p~l~~~~~~~~~~~~~~w~~~~~~~~~-~~~L~p~~~~t~~f~~~v~~Ev~ 314 (596)
|+-. ....... ..+. |.. +++.++.. ..-+. ...+|.+||++.++..+.++++.
T Consensus 86 P~i~~~~~~~~~~~~~~~~~~-v~~----~~g~~~~~--~~w~G~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 86 PGIRVDQNYSPFLSGMDKGKF-CEI----ESGELFVG--KMWPGTTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred ccccCCCCChHHHHHHHCCEE-EEC----CCCCeEEE--eecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 3221 1111110 0110 110 11111100 00111 23689999999999999998876
No 159
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=25.79 E-value=99 Score=33.25 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..||.+++++|++.|+++++-||
T Consensus 181 ~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 181 AVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEE
Confidence 37999999999999999999887
No 160
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=25.29 E-value=84 Score=33.17 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..|+.+++++|++.|+++|+-||-
T Consensus 151 ~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 151 ATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred cccCHHHHHHHHHHHHHcCcEEEE
Confidence 369999999999999999987764
No 161
>PLN00175 aminotransferase family protein; Provisional
Probab=25.22 E-value=2.2e+02 Score=31.04 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||.+++++|++.|+++++-||-
T Consensus 202 ~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 202 KMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred cCCCHHHHHHHHHHHHHcCcEEEE
Confidence 479999999999999999997773
No 162
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=25.19 E-value=3.3e+02 Score=28.94 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCC
Q 007610 174 NYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDT 253 (596)
Q Consensus 174 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~ 253 (596)
++.+-+.++++++.+..+++.+=.+++-.+ |- ..+-.++ |. ...|. |.+++++.-+++||+|++-++
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~----~d-~~~FP--dp~~mi~~L~~~G~k~~~~~~- 85 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDVIWLDIE--HT---DGKRYFT----WD-KKKFP--DPEKMQEKLASKGRKLVTIVD- 85 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEChH--Hh---CCCCceE----eC-cccCC--CHHHHHHHHHHCCCEEEEEec-
Confidence 556799999999999999998666666322 10 1111111 11 11232 668899999999999999886
Q ss_pred CChhhh-HHhhCCcchhccccCcC--CCCCccccccccCC-CCCcCCCCChhHHHHHHHHHHHHHH
Q 007610 254 PGHSGS-WAGAHPEIVSCANKFWW--PAGTKWEDRLASEP-GTGQLNPLHPKTFGVMINVLENVAS 315 (596)
Q Consensus 254 PGH~~a-~~~~yp~l~~~~~~~~~--~~~~~w~~~~~~~~-~~~~L~p~~~~t~~f~~~v~~Ev~~ 315 (596)
|+-... -...|.+.... .+.+ +++.++.. ..-+ .+..+|.+||++.++..+.++++..
T Consensus 86 P~v~~~~~~~~y~e~~~~--g~~vk~~~g~~~~~--~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 86 PHIKRDDGYYVYKEAKDK--GYLVKNSDGGDFEG--WCWPGSSSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred CceecCCCCHHHHHHHHC--CeEEECCCCCEEEE--EECCCCcCCccCCChhHHHHHHHHHHHHhh
Confidence 432210 00111121110 0000 11111100 0011 2357899999999999999998764
No 163
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=25.18 E-value=1e+02 Score=34.77 Aligned_cols=104 Identities=14% Similarity=0.261 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEeccCCC-ChhhhHHhhCCcch------------hccccCcCCCCCccccccccCCCCC
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPEIDTP-GHSGSWAGAHPEIV------------SCANKFWWPAGTKWEDRLASEPGTG 293 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPEID~P-GH~~a~~~~yp~l~------------~~~~~~~~~~~~~w~~~~~~~~~~~ 293 (596)
+.-.+|++++.+||+++||.||=.+-+- +|-++-.-++|++. .|+.+..-+.|+.|+. |
T Consensus 194 ~~~~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~-----P--- 265 (497)
T PRK14508 194 YLFFRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSETGQLWGN-----P--- 265 (497)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcccCcCCC-----C---
Confidence 4557899999999999999998766553 23222222345542 1222222245566654 1
Q ss_pred cCCCC--ChhHHHHHHHHHHHHHHhCCC----------CceecCCCCcC--ccccCCCH
Q 007610 294 QLNPL--HPKTFGVMINVLENVASIFPE----------NFFHSGGDEIL--PACWKSDS 338 (596)
Q Consensus 294 ~L~p~--~~~t~~f~~~v~~Ev~~lF~~----------~~iHiGgDEv~--~~~w~~~p 338 (596)
.+|+. ...-|....+.++..+++|.. .++-|-.++.. .++|...|
T Consensus 266 ~y~w~~l~~~gy~ww~~rlr~~~~~~~~lRIDH~~Gf~r~W~IP~~~~~a~~G~~v~~p 324 (497)
T PRK14508 266 VYNWDALRKDGYRWWIERLRRSFKLYDIVRIDHFRGFEAYWEIPAGEKTAINGRWVPGP 324 (497)
T ss_pred CcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeeeecCCCCCCCCCeeecCC
Confidence 24442 356699999999999999863 45556555432 35666554
No 164
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=25.04 E-value=79 Score=35.32 Aligned_cols=41 Identities=5% Similarity=0.111 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCcc
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEI 267 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~l 267 (596)
.++++++++++++|++.|++++-|+...-.....+..-+.+
T Consensus 142 ~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~i 182 (454)
T PRK09427 142 VLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKV 182 (454)
T ss_pred hCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCE
Confidence 68999999999999999999999996665555555544444
No 165
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=24.87 E-value=49 Score=26.65 Aligned_cols=23 Identities=9% Similarity=0.254 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCc
Q 007610 172 SRNYYEVDDILRTISAMSA-NKLN 194 (596)
Q Consensus 172 aR~f~~~~~ik~~Id~ma~-~KlN 194 (596)
.|||+|...+|++++.|.. |+++
T Consensus 1 qRH~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 1 QRHFLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp --EE--HHHHHHHHHHHHT-TT--
T ss_pred CcccccHHHHHHHHHHHHHHhCcC
Confidence 4999999999999999998 7765
No 166
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.86 E-value=2.2e+02 Score=28.98 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHhcCCEEEecc
Q 007610 228 YTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 228 YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
.+.++..++|+.++++|..|+||+
T Consensus 97 i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 97 ISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred CCHHHHHHHHHHHHhCCCeEeccc
Confidence 678888899999999999999886
No 167
>PLN02635 disproportionating enzyme
Probab=24.63 E-value=96 Score=35.40 Aligned_cols=104 Identities=10% Similarity=0.249 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEeccCCC-ChhhhHHhhCCcch------------hccccCcCCCCCccccccccCCCCC
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPEIDTP-GHSGSWAGAHPEIV------------SCANKFWWPAGTKWEDRLASEPGTG 293 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPEID~P-GH~~a~~~~yp~l~------------~~~~~~~~~~~~~w~~~~~~~~~~~ 293 (596)
+.-.+|++++.+||+++||.||=.|-+- +|-++-.-++|++. .++.++.-+.|+.|+..
T Consensus 220 ~~~~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~P-------- 291 (538)
T PLN02635 220 FLFQRQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSP-------- 291 (538)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcccccCCCc--------
Confidence 4456789999999999999987665542 33333222344442 12222223455666641
Q ss_pred cCCC--CChhHHHHHHHHHHHHHHhCCC----------CceecCCCC--cCccccCCCH
Q 007610 294 QLNP--LHPKTFGVMINVLENVASIFPE----------NFFHSGGDE--ILPACWKSDS 338 (596)
Q Consensus 294 ~L~p--~~~~t~~f~~~v~~Ev~~lF~~----------~~iHiGgDE--v~~~~w~~~p 338 (596)
.+|| ....-|.+..+.++..+++|.- .|+.|=.++ ...++|...|
T Consensus 292 ~y~w~~l~~~gy~ww~~Rlr~~~~~~d~lRIDHf~Gf~r~W~IP~g~~ta~~G~wv~~P 350 (538)
T PLN02635 292 LYDWKAMAKDGYSWWAGRMRRALELYDEFRIDHFRGFAGYWAVPADAKTAMNGRWKVGP 350 (538)
T ss_pred CcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhheeeeccCCCCCCCCCeeeeCC
Confidence 2444 3467889999999999998863 455554333 3456676654
No 168
>PRK07550 hypothetical protein; Provisional
Probab=24.63 E-value=1.6e+02 Score=31.46 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..++.+++++|++.|+++|+-||=
T Consensus 178 ~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 178 VVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred cccCHHHHHHHHHHHHHcCeEEEE
Confidence 368999999999999999998763
No 169
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=24.42 E-value=57 Score=21.29 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=10.8
Q ss_pred ChhhHHHHHHHHHH
Q 007610 1 MARAIIFFISLSQL 14 (596)
Q Consensus 1 m~~~l~l~~~~~~~ 14 (596)
|||+++++++++.+
T Consensus 7 mKkil~~l~a~~~L 20 (25)
T PF08139_consen 7 MKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 48888888887764
No 170
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.29 E-value=1.4e+02 Score=33.34 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=36.8
Q ss_pred HHHHHHHHhC--CCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhc--CCEEEec
Q 007610 182 LRTISAMSAN--KLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDY--GVRVVPE 250 (596)
Q Consensus 182 k~~Id~ma~~--KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~r--gI~VIPE 250 (596)
.++|+.|+.. .++.+|+ ++|+-+.--|...+ ..||.+++.++++.++++ ||.|-..
T Consensus 255 ~ell~~m~~~~~gc~~l~i--------glQSgsd~vLk~m~-----R~~t~e~~~~~v~~ir~~~pgi~i~~d 314 (455)
T PRK14335 255 DDLIATIAQESRLCRLVHL--------PVQHGSNGVLKRMN-----RSYTREHYLSLVGKLKASIPNVALSTD 314 (455)
T ss_pred HHHHHHHHhCCCCCCeEEE--------ccCcCCHHHHHHcC-----CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5677888775 3665555 34444433343322 358999999999999998 7765433
No 171
>PRK10426 alpha-glucosidase; Provisional
Probab=24.26 E-value=5.7e+02 Score=29.87 Aligned_cols=140 Identities=13% Similarity=0.170 Sum_probs=73.2
Q ss_pred CCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCC-CCCCCCHHHHHHHHH
Q 007610 160 PLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYG-EDYLYTPSDVKKIIE 238 (596)
Q Consensus 160 P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~-~~~~YT~~di~eiv~ 238 (596)
|++.++|+.+.. + -+-+.++++++.+...++-+=-+++-|-++.+. .++..-. .+.|. +...|. |.+++|+
T Consensus 205 P~Wal~G~~~g~--~-~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~--~~~g~~~-~~~~~~d~~~FP--dp~~mi~ 276 (635)
T PRK10426 205 PDWAYDGVTLGI--Q-GGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRM--TSFGKRL-MWNWKWDSERYP--QLDSRIK 276 (635)
T ss_pred ChhhccCccccc--c-CCHHHHHHHHHHHHHcCCCeeEEEEeccccccc--ccccccc-cccceEChhhCC--CHHHHHH
Confidence 567888888632 1 246789999999999887644444434333222 1110000 00010 001122 5788889
Q ss_pred HHHhcCCEEEeccCCCChhhhHHhhCCcchhccccCcC--CCCCccccccccCCCCCcCCCCChhHHHHHHHHHHH
Q 007610 239 YGLDYGVRVVPEIDTPGHSGSWAGAHPEIVSCANKFWW--PAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLEN 312 (596)
Q Consensus 239 yA~~rgI~VIPEID~PGH~~a~~~~yp~l~~~~~~~~~--~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~E 312 (596)
.-+++||+||.-|| |+=... ...|.|... ..+.. +++.++-... ....++.+|.+||++.+...+.+++
T Consensus 277 ~L~~~G~k~v~~i~-P~v~~~-~~~y~e~~~--~gy~vk~~~g~~~~~~~-~~~~~~~~Dftnp~ar~Ww~~~~~~ 347 (635)
T PRK10426 277 QLNEEGIQFLGYIN-PYLASD-GDLCEEAAE--KGYLAKDADGGDYLVEF-GEFYAGVVDLTNPEAYEWFKEVIKK 347 (635)
T ss_pred HHHHCCCEEEEEEc-CccCCC-CHHHHHHHH--CCcEEECCCCCEEEeEe-cCCCceeecCCCHHHHHHHHHHHHH
Confidence 99999999999887 432110 001111110 00000 1111110000 0113467999999999999888765
No 172
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=24.25 E-value=95 Score=35.27 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=58.3
Q ss_pred eEEeccCCcccccceecCCCCCCCHHHHHHHHHHH-H-----------hCCCc---------------------------
Q 007610 154 IYVWDEPLFSHRGLLLDTSRNYYEVDDILRTISAM-S-----------ANKLN--------------------------- 194 (596)
Q Consensus 154 ~~I~D~P~f~~RG~mlD~aR~f~~~~~ik~~Id~m-a-----------~~KlN--------------------------- 194 (596)
..|+|.|..+-+|---|..| ..|.+.+-+++..+ . .++||
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~t~r~~~~~~~NF~~Gl~l~~~y~~~~~f~~w~~~~~d~~p~~l~ 367 (541)
T cd07201 289 NDIEDEPPLPPRPPERLTTL-LTPGGPLSQAFRDFLTSRPTVSQYFNFLRGLQLHNDYLENKGFSTWKDTHLDAFPNQLT 367 (541)
T ss_pred cccccCcCcCCCCCcccccc-cCCCCHHHHHHHHHhccCcccccccHHHhccccccccccccccccccccCCccCchhcc
Confidence 35778887776666666665 56666654443322 1 12333
Q ss_pred --EEEEEeecCCcccccCCCCccccccCC---------CCCCCCCCHHHHHHHHHHHHhcCCEEEeccCC
Q 007610 195 --VFHWHITDSHSFPLLLPSDPNLAAKGS---------YGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDT 253 (596)
Q Consensus 195 --~lh~HltDdq~frle~~~~P~Lt~~Ga---------~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~ 253 (596)
.=|+||.|. ||-+.++-+|-|. .|- |+. +. .-+.++..-.||++|||- -|.|+.
T Consensus 368 ~~~~~l~lvDa-g~~~N~p~ppllr-P~R~VDlIisfd~Sa-~~-~~~~L~~~~~y~~~~gIp-fPk~~~ 432 (541)
T cd07201 368 PSEDHLCLVDT-AFFINTSYPPLLR-PERKVDVILSLNYSL-GS-QFEPLKQASEYCSEQGIP-FPKIEL 432 (541)
T ss_pred ccccceeeeec-ccccCCCCCcccC-CCCcccEEEEecccc-CC-cchHHHHHHHHHHHcCCC-CCCCCC
Confidence 114788875 7777777777663 221 222 12 667899999999999998 666663
No 173
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=24.20 E-value=3.3e+02 Score=31.08 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHhc--CCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDY--GVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~r--gI~VIP 249 (596)
..||++++++|++.|+++ ++-||-
T Consensus 255 ~vls~e~l~~I~~ia~~~~~~l~II~ 280 (521)
T TIGR03801 255 VAMSDESIEKIVDIVANDRPDLMILT 280 (521)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 479999999999999986 776663
No 174
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=24.12 E-value=42 Score=37.40 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=17.4
Q ss_pred HHHHhcCCEEEe-------------ccCCCChhhh
Q 007610 238 EYGLDYGVRVVP-------------EIDTPGHSGS 259 (596)
Q Consensus 238 ~yA~~rgI~VIP-------------EID~PGH~~a 259 (596)
+.-++|||+|.- =+|+|||+..
T Consensus 47 DlEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 47 DLEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred chhhhcCcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 456789998865 3899999965
No 175
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=23.77 E-value=86 Score=36.93 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCcch
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIV 268 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~l~ 268 (596)
.++++++++|+++|++.|++++-|+...-.....+..-+++.
T Consensus 143 ~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~ii 184 (695)
T PRK13802 143 ALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVI 184 (695)
T ss_pred hcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEE
Confidence 578999999999999999999999976666655555445543
No 176
>PRK08361 aspartate aminotransferase; Provisional
Probab=23.72 E-value=2e+02 Score=30.88 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..++.+++++|++.|++++|-||-
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 181 ATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEEE
Confidence 368999999999999999997773
No 177
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.70 E-value=1.6e+02 Score=29.68 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCcccc------cC-CCCccccccCCCCCCCCCCHHHH----------------
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSHSFPL------LL-PSDPNLAAKGSYGEDYLYTPSDV---------------- 233 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq~frl------e~-~~~P~Lt~~Ga~~~~~~YT~~di---------------- 233 (596)
+.+...++++.+..-++..+.+-++..++... ++ .++|++. .|+ +..+|.+++
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~-vGa---GTVl~~e~a~~a~~aGA~FiVsP~~ 100 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMI-LGV---GSIVDAATAALYIQLGANFIVTPLF 100 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeE-Eee---EeCcCHHHHHHHHHcCCCEEECCCC
Confidence 67889999999999999999998876654431 11 4577765 565 246677665
Q ss_pred -HHHHHHHHhcCCEEEeccCCCChhhhHHh
Q 007610 234 -KKIIEYGLDYGVRVVPEIDTPGHSGSWAG 262 (596)
Q Consensus 234 -~eiv~yA~~rgI~VIPEID~PGH~~a~~~ 262 (596)
.+|+++|+++||-+||-+=+|.-......
T Consensus 101 ~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~ 130 (222)
T PRK07114 101 NPDIAKVCNRRKVPYSPGCGSLSEIGYAEE 130 (222)
T ss_pred CHHHHHHHHHcCCCEeCCCCCHHHHHHHHH
Confidence 47889999999999999999988765443
No 178
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=23.52 E-value=3e+02 Score=29.93 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHhc-CCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDY-GVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~r-gI~VI 248 (596)
..+|.++.++|++.|+++ ++-||
T Consensus 227 ~~~s~~~~~~l~~la~~~~~~~ii 250 (431)
T PRK15481 227 CSLSARRAAALRNLLARYPQVLVI 250 (431)
T ss_pred ccCCHHHHHHHHHHHHhcCCceEE
Confidence 369999999999999999 88777
No 179
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=23.40 E-value=1.7e+02 Score=29.95 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=52.4
Q ss_pred CCcccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHH
Q 007610 160 PLFSHRGLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEY 239 (596)
Q Consensus 160 P~f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~y 239 (596)
|++.+ |++.-.- .+.+-+.++++++.+..+++..=.+++-++ |--... ... =.+. ...| .+.+++++.
T Consensus 7 P~wa~-G~~~~~~-~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~--~~~~~~---~f~--~~~d-~~~F--pdp~~~i~~ 74 (265)
T cd06589 7 PKWAF-GYWLSRY-GYGDQDKVLEVIDGMRENDIPLDGFVLDDD--YTDGYG---DFT--FDWD-AGKF--PNPKSMIDE 74 (265)
T ss_pred cHHHH-HHHHhcC-CCCCHHHHHHHHHHHHHcCCCccEEEECcc--cccCCc---eee--eecC-hhhC--CCHHHHHHH
Confidence 44444 6664332 357899999999999999999777777554 321111 110 0010 0112 347899999
Q ss_pred HHhcCCEEEeccC
Q 007610 240 GLDYGVRVVPEID 252 (596)
Q Consensus 240 A~~rgI~VIPEID 252 (596)
.+++|++|++-|+
T Consensus 75 l~~~g~~~~~~~~ 87 (265)
T cd06589 75 LHDNGVKLVLWID 87 (265)
T ss_pred HHHCCCEEEEEeC
Confidence 9999999999886
No 180
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.35 E-value=3.9e+02 Score=28.99 Aligned_cols=118 Identities=9% Similarity=0.205 Sum_probs=0.0
Q ss_pred CcceEEEEecCCCeEEEEecChhhhhHHHHHHHHhhcCCCeeeeeceEEeccCCcccccceecCCCCCCCHHHHHHHHHH
Q 007610 108 NESYSLTITSDENTAYLVASTVWGAMRGLETFSQLVWGNPSCVAVGIYVWDEPLFSHRGLLLDTSRNYYEVDDILRTISA 187 (596)
Q Consensus 108 ~E~Y~L~i~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~ip~~~~I~D~P~f~~RG~mlD~aR~f~~~~~ik~~Id~ 187 (596)
+.++.+.++ ...|+|+.+ |+...+.-|.+.-..... .+++ |+|.=+.|.-+.-+.+.-++++.|.+.|+.
T Consensus 201 ~~~~~~~is--~r~ItisT~---Gl~~~i~~L~~~gl~~~L----aiSL-~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~ 270 (368)
T PRK14456 201 TRKYRFSIS--QRKITISTV---GITPEIDRLATSGLKTKL----AVSL-HSADQEKRERLMPQAARDYPLDELREALIG 270 (368)
T ss_pred ccccccCcC--cCeeEEECC---CChHHHHHHHHcCCCceE----EEEe-cCCCHHHHHHhccccCCCCCHHHHHHHHHH
Q ss_pred HHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhc--CCEEEeccCCCC
Q 007610 188 MSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDY--GVRVVPEIDTPG 255 (596)
Q Consensus 188 ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~r--gI~VIPEID~PG 255 (596)
.+...-..+.+ ++.-.|.++. +.+|+++|+++++.+ +|++||--.+++
T Consensus 271 ~~~~~g~~V~i----------eyvLI~GvND----------s~eda~~L~~~l~~~~~~VnlIpyn~~~~ 320 (368)
T PRK14456 271 YASKTGEPVTL----------VYMLLEGIND----------SPEDARKLIRFASRFFCKINLIDYNSIVN 320 (368)
T ss_pred HHHhcCCeEEE----------EEEEEcCCCC----------CHHHHHHHHHHHhcCCCeeEEeeeccCCC
No 181
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=23.29 E-value=2.1e+02 Score=30.32 Aligned_cols=52 Identities=8% Similarity=0.036 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCceecCCCCc-----C--ccccCCCHHHHHHHHhCC-CHHH
Q 007610 301 KTFGVMINVLENVASIFPENFFHSGGDEI-----L--PACWKSDSLIQSFLSTGG-TLSE 352 (596)
Q Consensus 301 ~t~~f~~~v~~Ev~~lF~~~~iHiGgDEv-----~--~~~w~~~p~~~~~m~~~g-~~~~ 352 (596)
.+.+=+-+-++-+.++.....+=||+|=- . ......-|.+.+.|.+.| +..+
T Consensus 246 ~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~ 305 (320)
T PF01244_consen 246 ASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEGLEDPSDLPNLTEELLKRGYSEED 305 (320)
T ss_dssp -BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBTBSSGGGHHHHHHHHHHTTS-HHH
T ss_pred ccHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCccCCHHHHHHHHHHHHHCCCCHHH
Confidence 34444455566777777777888888831 1 111233456666666665 4443
No 182
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=23.07 E-value=1.7e+02 Score=29.30 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VI 248 (596)
.+.++++++.++.++ ++-++++---. ++...+|..+...-....-...|.+++.++.+++++.|++++
T Consensus 178 ~~ei~~l~~~l~~l~-~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 178 DDSAHRLGEFIKDMG-NIEKIELLPYH--ELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHHHHhcC-CcceEEEecCC--ccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 568899988887754 33344432110 000001101100000011235799999999999999999874
No 183
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=23.01 E-value=77 Score=26.15 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCcc
Q 007610 228 YTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEI 267 (596)
Q Consensus 228 YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~l 267 (596)
+...=+++.++||+++|..|+|.= .=+..+++.+|++
T Consensus 39 ia~~L~~~~l~~a~~~~~kv~p~C---~y~~~~~~~hpey 75 (78)
T PF14542_consen 39 IAKKLVEAALDYARENGLKVVPTC---SYVAKYFRRHPEY 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEETS---HHHHHHHHH-GGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEC---HHHHHHHHhCccc
Confidence 678889999999999999999962 2233456667765
No 184
>PLN03059 beta-galactosidase; Provisional
Probab=22.95 E-value=7.4e+02 Score=30.01 Aligned_cols=78 Identities=18% Similarity=0.139 Sum_probs=54.9
Q ss_pred EEeccCCcccccceecCCCCC--CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHH
Q 007610 155 YVWDEPLFSHRGLLLDTSRNY--YEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSD 232 (596)
Q Consensus 155 ~I~D~P~f~~RG~mlD~aR~f--~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~d 232 (596)
.|...|.+-+=|=| || +|.+.-++.|..|...++|++.-++- |.+.-+. .|.|. +=...|
T Consensus 38 ~idG~p~~i~sG~i-----HY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~----Wn~HEp~------~G~~d---F~G~~D 99 (840)
T PLN03059 38 IINGQRRILISGSI-----HYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPS------PGNYY---FEDRYD 99 (840)
T ss_pred EECCEEEEEEEeCc-----ccCcCCHHHHHHHHHHHHHcCCCeEEEEec----ccccCCC------CCeee---ccchHH
Confidence 34444444444433 55 46889999999999999999997763 5554332 34442 123789
Q ss_pred HHHHHHHHHhcCCEEEec
Q 007610 233 VKKIIEYGLDYGVRVVPE 250 (596)
Q Consensus 233 i~eiv~yA~~rgI~VIPE 250 (596)
+...++.|++.|+-||--
T Consensus 100 L~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 100 LVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHHHcCCEEEec
Confidence 999999999999999964
No 185
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=22.34 E-value=1e+02 Score=32.87 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCEEE-eccCCCChhh-hHHhhCCcchhccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHH
Q 007610 234 KKIIEYGLDYGVRVV-PEIDTPGHSG-SWAGAHPEIVSCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLE 311 (596)
Q Consensus 234 ~eiv~yA~~rgI~VI-PEID~PGH~~-a~~~~yp~l~~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~ 311 (596)
|.|++.-++.||+-| |-+ .||.= ++.+.+|+...- ....|.. ++ +...|+|.+|---++-+..++
T Consensus 98 ~kIl~RmreLGm~PVLPaF--~G~VP~~~~~~~P~a~i~-------~~~~W~~-f~---~~~~L~P~dplF~~i~~~F~~ 164 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAF--AGHVPRAFKRKYPNANIT-------RQGNWNG-FC---RPYFLDPTDPLFAEIAKLFYE 164 (333)
T ss_dssp HHHHHHHHHHT-EEEEE----S-EE-TTHHHHSTT--EE----------EETT-EE-----EEE-SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccCCCc--CCCCChHHHhcCCCCEEe-------eCCCcCC-CC---CCceeCCCCchHHHHHHHHHH
Confidence 678999999999855 543 57774 456678876321 1124654 21 235799999988888899999
Q ss_pred HHHHhCC
Q 007610 312 NVASIFP 318 (596)
Q Consensus 312 Ev~~lF~ 318 (596)
|..++|.
T Consensus 165 ~q~~~yG 171 (333)
T PF05089_consen 165 EQIKLYG 171 (333)
T ss_dssp HHHHHH-
T ss_pred HHHHhcC
Confidence 9999997
No 186
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.18 E-value=1.5e+02 Score=30.24 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCcccccC-CCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDSHSFPLLL-PSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~-~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
++.+++.|+..+..+...+-++ |++... +..++- .....+.+++|.++|++.||+|.-|-
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~~---------~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLA-----GYDVYYEQANNET---------RRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-----CccccccccHHHH---------HHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 6678999999999999988764 221100 000000 01246789999999999999999996
No 187
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=22.16 E-value=1.3e+02 Score=32.19 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VI 248 (596)
..||.+++++|++.|+++++-||
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 180 AIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEE
Confidence 47999999999999999998777
No 188
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=22.06 E-value=75 Score=35.40 Aligned_cols=24 Identities=4% Similarity=0.225 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||.+++++|++.|+++++-||=
T Consensus 206 ~~~s~e~l~~ll~~a~~~~~~iI~ 229 (468)
T PLN02450 206 TTTTRTELNLLVDFITAKNIHLIS 229 (468)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEE
Confidence 479999999999999999998874
No 189
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=21.73 E-value=4.2e+02 Score=27.57 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 177 EVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 177 ~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
+.+.+++.++.+...+.+.+-+.++...+.+. .......++.++++++++.|+++|+.|.-..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~------------~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG------------DPPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC------------CCCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Confidence 36888899999999999999888754221111 0111235899999999999999999887554
No 190
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=21.40 E-value=4.8e+02 Score=28.98 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEeccCCCC
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVPEIDTPG 255 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIPEID~PG 255 (596)
..+|.+.-++|++.|+++++-|| |=|.-|
T Consensus 242 ~tms~~rR~~Ll~lA~~~~~~II-EDD~y~ 270 (459)
T COG1167 242 VTMSLERRKALLALAEKYDVLII-EDDYYG 270 (459)
T ss_pred CccCHHHHHHHHHHHHHcCCeEE-eeCcch
Confidence 47999999999999999999888 434433
No 191
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=21.32 E-value=5.4e+02 Score=27.37 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=66.5
Q ss_pred EEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCChhh---------------h---
Q 007610 198 WHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSG---------------S--- 259 (596)
Q Consensus 198 ~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~---------------a--- 259 (596)
+-++|..+-+-++++.|... .|+.+.+.+.++-+.+.||+-|--+=.|.|-. +
T Consensus 37 lFV~eg~~~~~~I~smPg~~---------r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~ 107 (322)
T PRK13384 37 IFIEEHITDAVPISTLPGIS---------RLPESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLARMVRT 107 (322)
T ss_pred EEEecCCCCceecCCCCCcc---------eECHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHHHHHH
Confidence 34455556667788877542 48999999999999999999888777777621 1
Q ss_pred HHhhCCcchh----ccccCcCCCCCccccccccCCCCCcCC---CCChhHHHHHHHHHHHHHHhCCCCceecCCCCcC
Q 007610 260 WAGAHPEIVS----CANKFWWPAGTKWEDRLASEPGTGQLN---PLHPKTFGVMINVLENVASIFPENFFHSGGDEIL 330 (596)
Q Consensus 260 ~~~~yp~l~~----~~~~~~~~~~~~w~~~~~~~~~~~~L~---p~~~~t~~f~~~v~~Ev~~lF~~~~iHiGgDEv~ 330 (596)
+.+.+|++.. |...| .....||.|+ +.|++|++.+.++---. --.|+|=+.
T Consensus 108 iK~~~pdl~vi~DVcLc~Y------------T~hGHcGil~~g~i~ND~Tl~~L~~~Als~--------A~AGADiVA 165 (322)
T PRK13384 108 IKAAVPEMMVIPDICFCEY------------TDHGHCGVLHNDEVDNDATVENLVKQSVTA--------AKAGADMLA 165 (322)
T ss_pred HHHHCCCeEEEeeeecccC------------CCCCceeeccCCcCccHHHHHHHHHHHHHH--------HHcCCCeEe
Confidence 2335788853 43322 1122345554 56899998877653322 235777664
No 192
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=21.28 E-value=86 Score=29.70 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHHHhhhcCCCCCCeeecCcEEEcCC
Q 007610 1 MARAIIFFISLSQLCLLSLQSDPINVWPKPRIFSWPK 37 (596)
Q Consensus 1 m~~~l~l~~~~~~~~~~~~~~~~~~l~P~P~~~~~~~ 37 (596)
|+|.|+..++..++++.+.. ..-.--|.|.+++..+
T Consensus 1 mkr~Lla~la~~~llAgC~~-~ed~~~p~P~~i~~~s 36 (176)
T COG4314 1 MKRTLLAILAVTALLAGCRQ-AEDGAPPLPRQITDRS 36 (176)
T ss_pred CchhHHHHHHHHHHHHhcch-hhcCCCCCCccccccc
Confidence 78888777766665443332 2223356788887654
No 193
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=21.05 E-value=1.2e+02 Score=32.53 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..||++++++|++.|+++++-||-
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 180 AVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred cccCHHHHHHHHHHHHHCCEEEEE
Confidence 379999999999999999997773
No 194
>PRK05764 aspartate aminotransferase; Provisional
Probab=21.02 E-value=1.5e+02 Score=31.68 Aligned_cols=24 Identities=17% Similarity=0.512 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 007610 226 YLYTPSDVKKIIEYGLDYGVRVVP 249 (596)
Q Consensus 226 ~~YT~~di~eiv~yA~~rgI~VIP 249 (596)
..+|.+++++|++.|+++||-||-
T Consensus 179 ~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 179 AVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEE
Confidence 368999999999999999998884
No 195
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.98 E-value=87 Score=31.90 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHhcCCEEE
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVV 248 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VI 248 (596)
.+|.+++++|.+||+++||..+
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~ 73 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFF 73 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEE
Confidence 5899999999999999999876
No 196
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=20.96 E-value=77 Score=34.73 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCEE-------------EeccCCCChhhh
Q 007610 231 SDVKKIIEYGLDYGVRV-------------VPEIDTPGHSGS 259 (596)
Q Consensus 231 ~di~eiv~yA~~rgI~V-------------IPEID~PGH~~a 259 (596)
+-+-+..+.-++|||+| |--||+|||...
T Consensus 74 dtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 74 DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred chHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 34566778889999998 557999999864
No 197
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.79 E-value=92 Score=31.68 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCC
Q 007610 176 YEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPG 255 (596)
Q Consensus 176 ~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PG 255 (596)
+++..++.+++.|+.| .|- = ++ +|+....|.++-+||.++.|+++||.|.|- .+.-
T Consensus 9 l~~~~~~d~Le~~g~y---------ID~-------l---Kf----g~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~ 64 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDY---------ITF-------V---KF----GWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLF 64 (237)
T ss_pred CCHHHHHHHHHHhhhh---------eee-------E---Ee----cCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHH
Confidence 6999999999999875 110 0 11 233334677889999999999999999876 4444
Q ss_pred hhhhHHhhCCcch-hccccCcCCCCCccccccccCCCCCcCCCCChhHHHHHHHHHHH
Q 007610 256 HSGSWAGAHPEIV-SCANKFWWPAGTKWEDRLASEPGTGQLNPLHPKTFGVMINVLEN 312 (596)
Q Consensus 256 H~~a~~~~yp~l~-~~~~~~~~~~~~~w~~~~~~~~~~~~L~p~~~~t~~f~~~v~~E 312 (596)
|........+++. .|.. .+- ...+-..|.++...++=..+++.+-+.
T Consensus 65 E~~~~q~~~~~Yl~~~k~---------lGf-~~IEiS~G~~~i~~~~~~rlI~~~~~~ 112 (237)
T TIGR03849 65 EIAHSKGKFDEYLNECDE---------LGF-EAVEISDGSMEISLEERCNLIERAKDN 112 (237)
T ss_pred HHHHHhhhHHHHHHHHHH---------cCC-CEEEEcCCccCCCHHHHHHHHHHHHhC
Confidence 4432222233332 3421 110 124556788888887777777766544
No 198
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=20.77 E-value=46 Score=34.16 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEeccCCCChhhhHHhhCCcch
Q 007610 227 LYTPSDVKKIIEYGLDYGVRVVPEIDTPGHSGSWAGAHPEIV 268 (596)
Q Consensus 227 ~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~yp~l~ 268 (596)
.++++++++++++|++.|++++-|+...-....++..-+.+.
T Consensus 141 ~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~ii 182 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADII 182 (254)
T ss_dssp GSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred hCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEE
Confidence 478999999999999999999999976666655555445553
No 199
>PRK10425 DNase TatD; Provisional
Probab=20.76 E-value=8.5e+02 Score=24.79 Aligned_cols=63 Identities=10% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcCCcEE-----EeccccccCCcccCCCCCCC-CCeEEEEeCCCchhHHHHHHcCCeEEEc
Q 007610 354 LEKFINFVFPFIVALDKTAI-----YWEDVILDNEIKVDPSYLYP-EYTIFQSWKNGTESTKKIVQAGYRVIVS 421 (596)
Q Consensus 354 ~~~f~~~~~~~l~~~gk~~i-----~W~d~~~~~~~~~~~~~lp~-~~~iv~~W~~~~~~~~~~~~~G~~vI~s 421 (596)
+..++.+..+..++.++-++ .|+|.+.- +. ...+. ...+++.+.++.+.++++.+.|+-+=.+
T Consensus 106 Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~i----L~-~~~~~~~~~i~H~fsG~~~~~~~~l~~G~~~si~ 174 (258)
T PRK10425 106 QERAFVAQLAIAAELNMPVFMHCRDAHERFMAL----LE-PWLDKLPGAVLHCFTGTREEMQACLARGLYIGIT 174 (258)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHH----HH-HhccCCCCeEEEecCCCHHHHHHHHHCCCEEEEC
Confidence 45566666777777777654 56665420 10 01110 2567766676667788899999665544
No 200
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=2e+02 Score=30.33 Aligned_cols=126 Identities=14% Similarity=0.232 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCcccc-ccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEeccCCCCh
Q 007610 178 VDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLA-AKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEIDTPGH 256 (596)
Q Consensus 178 ~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt-~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH 256 (596)
...+-+.+...+.+|||.|..-+.||-|- +..++--++. ..++- =.-.||.-+++-|++.||-+|.-|=++--
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~-lty~s~d~~~~~~~sv-----~~f~Di~~~iKkaKe~giY~IARiVvFKD 149 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGE-LTYPSSDEINKYTKSV-----NKFKDIEPVIKKAKENGIYAIARIVVFKD 149 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCcc-Eeccccchhhhhhhcc-----ccccccHHHHHHHHhcCeEEEEEEEEeee
Confidence 44556678888999999999999999763 2222211111 11221 12458999999999999999988755433
Q ss_pred hhhHHhhCC-cchhccccCcCCCCCcccccccc-----CCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 007610 257 SGSWAGAHP-EIVSCANKFWWPAGTKWEDRLAS-----EPGTGQLNPLHPKTFGVMINVLENVASI 316 (596)
Q Consensus 257 ~~a~~~~yp-~l~~~~~~~~~~~~~~w~~~~~~-----~~~~~~L~p~~~~t~~f~~~v~~Ev~~l 316 (596)
+--. +..| ++.. +.++++|...... ...-.=.|+-++.+++.--.|-+|.++.
T Consensus 150 ~~l~-~~n~fk~av------~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~f 208 (400)
T COG1306 150 TILA-KENPFKIAV------YKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKF 208 (400)
T ss_pred eeEE-eecCceEEE------EcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHc
Confidence 3111 0011 1111 1234455431110 0111236888999999999999998873
No 201
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=20.44 E-value=3.4e+02 Score=27.34 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=44.6
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 007610 166 GLLLDTSRNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGV 245 (596)
Q Consensus 166 G~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI 245 (596)
|.++.++. -+.+.|+.++.++++.+++.+..-+.|. ...+|.++++++-+.++++||
T Consensus 3 g~~~~~~~------~~~~~~~~~~~~G~~~vel~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~gl 59 (273)
T smart00518 3 GAHVSAAG------GLYKAFIEAVDIGARSFQLFLGNPRSWK-----------------GVRLSEETAEKFKEALKENNI 59 (273)
T ss_pred eEEEcccC------cHhHHHHHHHHcCCCEEEEECCCCCCCC-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 55555552 2557889999999999999875432221 014799999999999999999
Q ss_pred EEE
Q 007610 246 RVV 248 (596)
Q Consensus 246 ~VI 248 (596)
+|.
T Consensus 60 ~ls 62 (273)
T smart00518 60 DVS 62 (273)
T ss_pred CEE
Confidence 875
No 202
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=20.42 E-value=1.7e+02 Score=25.41 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcC--CEEEec
Q 007610 173 RNYYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYG--VRVVPE 250 (596)
Q Consensus 173 R~f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rg--I~VIPE 250 (596)
....+.+.+.+.|+.++.......+++++-. -|-|. ...+++.++++++++++ +.|.-+
T Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GG---------EPll~----------~~~~~l~~~i~~~~~~~~~~~i~i~ 86 (119)
T PF13394_consen 26 GEEMSIEELEEIIDELKEKGFRPSTVVFTGG---------EPLLY----------LNPEDLIELIEYLKERGPEIKIRIE 86 (119)
T ss_dssp GGS--HHHHHHHHHHHHHTT----EEEEESS---------SGGGS----------TTHHHHHHHHCTSTT-----EEEEE
T ss_pred CCcccHhHHHHHHHHHHhcCCceEEEEEECC---------CCccc----------cCHHHHHHHHHHHHhhCCCceEEEE
Confidence 4567899999999999998888777877642 34431 45789999999999999 666533
No 203
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=20.37 E-value=6.4e+02 Score=23.97 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccCCCCccccccCCCCCCCCC--CHHHHHHHHHHHHhcCCEEEecc
Q 007610 175 YYEVDDILRTISAMSANKLNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLY--TPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 175 f~~~~~ik~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~Y--T~~di~eiv~yA~~rgI~VIPEI 251 (596)
=++.+.-.+.+..|...++|+|-+=-+-..++.+ ||. .+ + +.+++ ..+=|..+++.|.+.||.|+.-+
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~----yps---~~-~-~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl 85 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAF----YPS---KL-S-PGGFYMPPVDLLEMILDAADKYGMKVFVGL 85 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCccc----CCc---cc-c-CccccCCcccHHHHHHHHHHHcCCEEEEeC
Confidence 3667888999999999999988776554433322 221 00 0 01111 34568899999999999999665
No 204
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.28 E-value=1.4e+02 Score=33.14 Aligned_cols=57 Identities=19% Similarity=0.029 Sum_probs=36.0
Q ss_pred HHHHHHHHhCC--CcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecc
Q 007610 182 LRTISAMSANK--LNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDYGVRVVPEI 251 (596)
Q Consensus 182 k~~Id~ma~~K--lN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEI 251 (596)
.++++.|+..+ +|.+|+= +|+-+---|... +..||.+++.+.++.+++.|+.+.+..
T Consensus 234 ~ell~~l~~~~~g~~~l~ig--------vQSgs~~vLk~m-----~R~~~~~~~~~~v~~lr~~~~~i~i~~ 292 (440)
T PRK14334 234 DDVIAAMAETPAVCEYIHLP--------VQSGSDRVLRRM-----AREYRREKYLERIAEIREALPDVVLST 292 (440)
T ss_pred HHHHHHHHhcCcCCCeEEec--------cccCCHHHHHHh-----CCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 56777777654 6655543 333332223322 235899999999999999986654443
No 205
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.18 E-value=1.6e+02 Score=32.74 Aligned_cols=56 Identities=18% Similarity=0.072 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCC--CcEEEEEeecCCcccccCCCCccccccCCCCCCCCCCHHHHHHHHHHHHhc--CCEEEe
Q 007610 181 ILRTISAMSANK--LNVFHWHITDSHSFPLLLPSDPNLAAKGSYGEDYLYTPSDVKKIIEYGLDY--GVRVVP 249 (596)
Q Consensus 181 ik~~Id~ma~~K--lN~lh~HltDdq~frle~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~r--gI~VIP 249 (596)
-.++|+.|+..+ ++.||+ ++|+-+.--|...+ ..||.++++++++.++++ ||.|--
T Consensus 244 ~~ell~~~~~~~~g~~~l~i--------glQSgsd~vLk~m~-----R~~t~~~~~~~v~~lr~~~pgi~i~t 303 (445)
T PRK14340 244 SESLVRTIAARPNICNHIHL--------PVQSGSSRMLRRMN-----RGHTIEEYLEKIALIRSAIPGVTLST 303 (445)
T ss_pred CHHHHHHHHhCCCCCCeEEE--------CCCcCCHHHHHhcC-----CCCCHHHHHHHHHHHHHhCCCCEEec
Confidence 378889998873 665554 45665554554433 358999999999999999 776543
Done!