BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007611
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 131/276 (47%), Gaps = 53/276 (19%)
Query: 137 KELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRESV 194
+++ ++ + + ++EV DAR P T +D + K ++LLNK+D+ ++
Sbjct: 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSR--------KETIILLNKVDIADEKTT 64
Query: 195 EKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254
+KW+++ +++ V ++ +P +L L + L ++L
Sbjct: 65 KKWVEFFKKQGKRVI---------------TTHKGEPRKVLLKK--LSFDRLARVL---- 103
Query: 255 RSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDC 314
++G+PN GKS++IN LK ++VGA PG+T+ +Q L+ VK+LD
Sbjct: 104 ------------IVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDT 151
Query: 315 PGVVM--LKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVD 372
PG++ + S + A + L +E+++D + I R S+ SF
Sbjct: 152 PGILYKNIFSEDLAAKLLLVGSLPVERIED-----QRIFERAFEIFARSIGIESSF---S 203
Query: 373 DFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGK 408
+F + A RG LKKGG+ D+E A + + +GK
Sbjct: 204 EFFEDFARKRGLLKKGGVPDIERALMLFFTEVAQGK 239
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 131/277 (47%), Gaps = 35/277 (12%)
Query: 137 KELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEK 196
+E+ + +++ D++ E++DAR P+ +R +E ++ +K ++LLNK D ++
Sbjct: 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQ 70
Query: 197 WLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256
W ++ Q R+ L S + I+ S + E ++ R+
Sbjct: 71 WKEHF-----------ENQGIRS-LSINSVNGQGLNQIVPASKEILQEKFDRM-----RA 113
Query: 257 HEIK-KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCP 315
+K ++I +IG+PNVGKS+LIN L + ++A G PG+T S Q V++ K ++LLD P
Sbjct: 114 KGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTP 173
Query: 316 GVVMLKSGENDASIALRNC-------KRIEKLDDPVGPVKEILNRCPANL--LISLYKLP 366
G++ K D + LR I D V ++ + P L L ++P
Sbjct: 174 GILWPKF--EDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIP 231
Query: 367 SFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHD 403
+ + + + RG L GG+++ + +I+ D
Sbjct: 232 --EDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRD 266
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 25/179 (13%)
Query: 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKN---VKLLDCPGV 317
KS + +IG PNVGKS++ N+L +V +G PG+T +E + + N K++D PGV
Sbjct: 6 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
Query: 318 VMLKSGENDASIALRNCKRIEKLDDPVGPVKEI-----------LNRCPANLLISLYKLP 366
L + D IA R+ EK D V V L ANLL++L K+
Sbjct: 65 YSLTANSIDEIIA-RDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMD 123
Query: 367 SFDSVD-----DFLQKVATVR----GKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 416
S+ D L+K+ V+ KK GI +++ A I + D +I Y P
Sbjct: 124 LAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKTAEIKYPNFEP 182
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPG 316
V +G NVGKSSL+N+L +A V TPG TRS+ ++ +D PG
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPG 77
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKN---VKLLDCPGV 317
KS + +IG PNVGKS++ N+L +V +G PG+T +E + + N K++D PGV
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
Query: 318 VMLKSGENDASIALRNCKRIEKLDDPVGPVKEI-----------LNRCPANLLISLYKLP 366
L + D IA R+ EK D V V L ANLL++L K+
Sbjct: 61 YSLTANSIDEIIA-RDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMD 119
Query: 367 SFDSVD-----DFLQKVATVR----GKLKKGGIVDVEAAARIILHD 403
S+ D L+K+ V+ KK GI +++ A I + D
Sbjct: 120 LAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 165
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKN---VKLLDCPGV 317
KS + +IG PNVGKS++ N+L +V +G PG+T +E + + N K++D PGV
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
Query: 318 VMLKSGENDASIALRNCKRIEKLDDPVGPVKEI-----------LNRCPANLLISLYKLP 366
L + D IA R+ EK D V V L ANLL++L K+
Sbjct: 61 YSLTANSIDEIIA-RDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMD 119
Query: 367 SFDSVD-----DFLQKVATVR----GKLKKGGIVDVEAAARIILHD 403
S+ D L+K+ V+ KK GI +++ A I + D
Sbjct: 120 LAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 165
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 248 KLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK 307
+LL + ++ + V ++G PNVGKSSL+N+ + A V PG TR + E QL
Sbjct: 210 QLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV 269
Query: 308 N---VKLLDCPGV 317
V++LD G+
Sbjct: 270 GGIPVQVLDTAGI 282
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKN---VKLLDCPGV 317
KS + +IG PNVGKS++ N+L +V +G PG+T +E + + N K++D PGV
Sbjct: 3 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
Query: 318 VMLKSGENDASIALRNCKRIEKLDDPVGPVKEI-----------LNRCPANLLISLYKLP 366
L + D IA R+ EK D V V L ANLL++L K
Sbjct: 62 YSLTANSIDEIIA-RDYIINEKPDLVVNIVDATALERNLYLTLQLXEXGANLLLALNKXD 120
Query: 367 SFDSVD-----DFLQKVATVR----GKLKKGGIVDVEAAARIILHD 403
S+ D L+K+ V+ KK GI +++ A I + D
Sbjct: 121 LAKSLGIEIDVDKLEKILGVKVVPLSAAKKXGIEELKKAISIAVKD 166
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 39/196 (19%)
Query: 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191
D F L ++ E +++ ++D D G+ + + D ++L+ NK DL+PR
Sbjct: 58 DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRF----AADNPILLVGNKADLLPR 113
Query: 192 E----SVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLI 247
+ +W++ + EEL P ++ S G I
Sbjct: 114 SVKYPKLLRWMRRMAEELGLC----------------------PVDVCLVSAAKG----I 147
Query: 248 KLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSL-----KRCHVANVGATPGLTRSMQE 302
+ K + ++ V V+G NVGKS+ IN + + +V PG T M E
Sbjct: 148 GMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE 207
Query: 303 VQLDKNVKLLDCPGVV 318
+ L+ L D PG++
Sbjct: 208 IPLESGATLYDTPGII 223
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 265 VGVIGLPNVGKSSLINSL-KRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSG 323
+ + G NVGKSS INSL R ++A + PG T+++ ++ + +D PG K
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85
Query: 324 ENDASIALRNCKRIEKLDDPVGPVKEI--LNRCPANLLISLYKLPSFDSVDDFLQKVATV 381
+++ R + + + V +I L P+N + +Y+ + + + +AT
Sbjct: 86 KSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIV--IATK 143
Query: 382 RGKLKKG 388
K+ KG
Sbjct: 144 ADKIPKG 150
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 111/279 (39%), Gaps = 60/279 (21%)
Query: 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190
+D F + L + + ++++++D D G+ + + V G +K ++L+ NK DL+P
Sbjct: 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV---GNNK-VLLVGNKADLIP 110
Query: 191 R----ESVEKWLKYLREEL---PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGA 243
+ + V+ W +Y ++L P F S AK I + +D +
Sbjct: 111 KSVKHDKVKHWXRYSAKQLGLKPEDVFLISA--------------AKGQGIAELADAI-- 154
Query: 244 ETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLIN------SLKRCHVANVGATPGLT 297
Y R + V V+G NVGKS+ IN S + +V PG T
Sbjct: 155 --------EYYRGGK-----DVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTT 201
Query: 298 RSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPAN 357
+ ++ LD+ L D PG++ N A K+ KL P +K + +
Sbjct: 202 LDLIDIPLDEESSLYDTPGII------NHHQXAHYVGKQSLKLITPTKEIKPXVFQLNEE 255
Query: 358 LLISLYKLPSFDSVD--------DFLQKVATVRGKLKKG 388
+ L FD V F ++ R KL+K
Sbjct: 256 QTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKA 294
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLDKNVKLL 312
V ++G PNVGKSSL N L + A V PG+TR ++E V+ D+ LL
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLL 53
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 244 ETLIKLLK----NYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR 298
ET+IK L+ + EI +I V ++G PNVGKS+L N++ A V PG TR
Sbjct: 158 ETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGV 317
TV ++G PNVGKS+L N L + A V G+TR + ++ K KL+D GV
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGV 59
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGV 317
K +T+G+IG PN GK++L N L VG G+T +E Q D V L+D PG
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGT 60
Query: 318 VMLKSGENDASI 329
L + + S+
Sbjct: 61 YSLTTISSQTSL 72
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGV 317
K +T+G+IG PN GK++L N L VG G+T +E Q D V L+D PG
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGT 60
Query: 318 VMLKSGENDASI 329
L + + S+
Sbjct: 61 YSLTTISSQTSL 72
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGV 317
K +T+G+IG PN GK++L N L VG G+T +E Q D V L+D PG
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGT 60
Query: 318 VMLKSGENDASI 329
L + + S+
Sbjct: 61 YSLTTISSQTSL 72
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 19/150 (12%)
Query: 248 KLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE---VQ 304
+L+ +Y + + ++ + G PN GKS+L+N+L A V PG TR E +
Sbjct: 219 RLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH 278
Query: 305 LDKNVKLLDCPGV--------------VMLKSGENDASIALRNCKRIEKLDDPVGPVKEI 350
+L D G+ +K E D + L + E+LDD + ++E+
Sbjct: 279 DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLG-TERLDDELTEIREL 337
Query: 351 LNRCPANLLISLY-KLPSFDSVDDFLQKVA 379
PA +++ KL + D ++ +A
Sbjct: 338 KAAHPAAKFLTVANKLDRAANADALIRAIA 367
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 264 TVGVIGLPNVGKSSLINSLK--RCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVV 318
TV ++G PNVGK+++ N+L R HV N PG+T +E + +K ++D PG+
Sbjct: 5 TVALVGNPNVGKTTIFNALTGLRQHVGN---WPGVTVEKKEGIMEYREKEFLVVDLPGIY 61
Query: 319 MLKSGENDASIA 330
L + D IA
Sbjct: 62 SLTAHSIDELIA 73
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS----MQEVQLDKNVKLLDCPGVV 318
VG++G PN GKSSL+ ++ R H + P T S + EV ++ L D PG++
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 216
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLL 312
+ VG++GLPNVGKS+L N+L R + L + +DKNV ++
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRAN--------ALAANYPFATIDKNVGVV 43
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLL 312
+ VG++GLPNVGKS+L N+L R + L + +DKNV ++
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRAN--------ALAANYPFATIDKNVGVV 43
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE---VQLDKNVKLLDCPGV 317
+ +TVG+IG PN GK++L N L VG G+T +E D V L+D PG
Sbjct: 2 QKLTVGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGIFATTDHQVTLVDLPGT 60
Query: 318 VMLKSGENDASI 329
L + + S+
Sbjct: 61 YSLTTISSQTSL 72
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGV 317
V ++G PNVGKS+L+N+L VA + P TR L + + +D PG+
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR----SMQEVQLDKNVKLLDCPGV 317
V ++G PNVGKS+L+N+L V+ + G TR ++ + + + LD PG+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 68
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 23/164 (14%)
Query: 192 ESVEKWLKYLREELPAVAFKCSTQEQRAN------LGWKSSKTAKPSNILQTSDCLGAET 245
E V K L ++ + K E RAN LG+ ++ L D L A
Sbjct: 121 EEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDA-- 178
Query: 246 LIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSL---KRCHVANVGATPGLTRSMQE 302
+ + KN + ++ I +IG PNVGKSSL+N++ +R V+NV T TR +
Sbjct: 179 VAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGT---TRDAVD 235
Query: 303 VQLDKNVK---LLDCPGVVMLKSGE----NDASIALRNCKRIEK 339
N + ++D G M K G+ + LR K I++
Sbjct: 236 TSFTYNQQEFVIVDTAG--MRKKGKVYETTEKYSVLRALKAIDR 277
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR-----SMQEVQLDKNVKLLDCPGV 317
V ++G PNVGKS++ N + ++ V TPG+TR S + + D N L+D G+
Sbjct: 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFN--LIDTGGI 81
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 263 ITVGVIGLPNVGKSSLINSL--KRCHVANVGATPGLTRSMQE---VQLDKNVKLLDCPGV 317
+ V + G PNVGK+SL N+L + +VAN PG+T +E + L+D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVAN---WPGVTVEKKEGVFTYKGYTINLIDLPGT 62
Query: 318 VMLKSGENDASIA 330
L D IA
Sbjct: 63 YSLGYSSIDEKIA 75
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR----SMQEVQLDKNVKLLDCPGV 317
V ++G PNVGKS+L+N+L V+ + G TR ++ + + + LD PG+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDKNVKLLDCPGVVMLKS 322
+ +IG PN GK+SL N L H VG PG+T R V+ +K++++ D PG+ +
Sbjct: 6 IALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 323 GENDASIA 330
+A +A
Sbjct: 65 YSPEAKVA 72
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR-----SMQEVQLDKNVKLLDCPGV 317
V ++G PNVGKS++ N + ++ V TPG+TR S + + D N L+D G+
Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFN--LIDTGGI 61
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 192 ESVEKWLKYLREELPAVAFKCSTQEQRAN------LGWKSSKTAKPSNILQTSDCLGAET 245
E V K L ++ + K E RAN LG+ ++ L D L A
Sbjct: 101 EEVAKILYRTKKPVVLAVNKLDNTEXRANIYDFYSLGFGEPYPISGTHGLGLGDLLDA-- 158
Query: 246 LIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSL---KRCHVANVGAT 293
+ + KN + ++ I +IG PNVGKSSL+N+ +R V+NV T
Sbjct: 159 VAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGT 209
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 263 ITVGVIGLPNVGKSSLINSL--KRCHVANVGATPGLTRSMQE---VQLDKNVKLLDCPGV 317
+ V + G PNVGK+SL N+L + +VAN PG+T +E + L+D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVAN---WPGVTVEKKEGVFTYKGYTINLIDLPGT 62
Query: 318 VMLKSGENDASIA 330
L D IA
Sbjct: 63 YSLGYSSIDEKIA 75
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 263 ITVGVIGLPNVGKSSLINSL--KRCHVANVGATPGLTRSMQE---VQLDKNVKLLDCPGV 317
+ V + G PNVGK+SL N+L + +VAN PG+T +E + L+D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVAN---WPGVTVEKKEGVFTYKGYTINLIDLPGT 62
Query: 318 VMLKSGENDASIA 330
L D IA
Sbjct: 63 YSLGYSSIDEKIA 75
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDKNVKLLDCPGV 317
+ +IG PN GK+SL N L H VG PG+T R V+ +K++++ D PG+
Sbjct: 6 IALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGI 59
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDKNVKLLDCPGV 317
+ +IG PN GK+SL N L H VG PG+T R V+ +K++++ D PG+
Sbjct: 6 IALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGI 59
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 244 ETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--Q 301
E L + LK + + + + ++G PNVGKS+L+N L A V PG TR + +
Sbjct: 225 EKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISE 284
Query: 302 EVQLDKNV-KLLDCPGVVMLKSGENDASIAL---RNCKRIEKLD 341
E+ + + +++D GV +S ND L R + IEK D
Sbjct: 285 EIVIRGILFRIVDTAGV---RSETNDLVERLGIERTLQEIEKAD 325
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 120 TSTASGKNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHL 179
T+ + D +R + ++ IE +D++L VLDA PL + ++ +++ +K
Sbjct: 298 TAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD----EEDRKILERIKNKRY 353
Query: 180 VLLLNKIDLVPR 191
++++NK+D+V +
Sbjct: 354 LVVINKVDVVEK 365
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 252 NYSRSHEIKKS-----------ITVGVIGLPNVGKSSLINSLK-RCHVANVGATPGLTRS 299
NY ++H + + I V G N GKSS +N+L + +A TPG T+
Sbjct: 5 NYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64
Query: 300 MQEVQLDKNVKLLDCPG 316
+ ++ +L+D PG
Sbjct: 65 INLFEVADGKRLVDLPG 81
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDKNVKLLDCPGV 317
+ +IG PN GK+SL N L H VG PG++ R V+ +K++++ D PG+
Sbjct: 6 IALIGNPNSGKTSLFN-LITGHNQRVGNWPGVSVERKSGLVKKNKDLEIQDLPGI 59
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDKNVKLLDCPGV 317
+ +IG PN GK+SL N L H VG PG+ R V+ +K++++ D PG+
Sbjct: 6 IALIGNPNSGKTSLFN-LITGHNQRVGNWPGVAVERKSGLVKKNKDLEIQDLPGI 59
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 266 GVIGLPNVGKSSLINSLKRCHV 287
G++GLPNVGKS+L N+L + +
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGI 27
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 262 SITVGVIGLPNVGKSSLINSL 282
S+ +G++GLPNVGKS+ N L
Sbjct: 22 SLKIGIVGLPNVGKSTFFNVL 42
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNV---KLLDCPGVVML 320
T+ + G PNVGKSS +N + R +V +V + T+++ D + +++D PG ++
Sbjct: 31 TIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPG-LLD 88
Query: 321 KSGENDASIALRNCKRIEKLDDPVGPVKEILNRC 354
++ EN +I + + ++ + + +I +C
Sbjct: 89 RAFENRNTIEMTTITALAHINGVILFIIDISEQC 122
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 24/126 (19%)
Query: 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318
+++ + V + G PN GKSSL+N+L A V G TR + L +++ + P +
Sbjct: 4 LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV----LREHIHIDGMPLHI 59
Query: 319 MLKSGENDASIAL------RNCKRIEKLD-----------DPVGPVK---EILNRCPANL 358
+ +G +AS + R + IE+ D D V P + E + R PA L
Sbjct: 60 IDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKL 119
Query: 359 LISLYK 364
I++ +
Sbjct: 120 PITVVR 125
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318
TV + G PNVGKS+L+ +L + + P TR + Q + +++D PG++
Sbjct: 169 TVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLL 225
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 246 LIKLLKNYSRSHEIKKSITVGV--IGLPNVGKSSLINSL 282
+++ LKN SR HE+ I GV +G P VGK+ L ++
Sbjct: 55 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 93
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 246 LIKLLKNYSRSHEIKKSITVGV--IGLPNVGKSSLINSLKRCHVANVGATPGLTRS 299
+++ LKN SR HE+ I GV +G P VGK+ L + VA P +T S
Sbjct: 46 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA-----VAGEARVPFITAS 96
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 246 LIKLLKNYSRSHEIKKSITVGV--IGLPNVGKSSLINSL 282
+++ LKN SR HE+ I GV +G P VGK+ L ++
Sbjct: 55 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 93
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 246 LIKLLKNYSRSHEIKKSITVGV--IGLPNVGKSSLINSL 282
+++ LKN SR HE+ I GV +G P VGK+ L ++
Sbjct: 31 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 69
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 264 TVGVIGLPNVGKSSLINSLK-------RCHVANVGATPGLTRSMQEVQLDKNVKLLDCPG 316
+VG +G P+VGKS+L++ L + PG+ R +++LD PG
Sbjct: 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-----GAKIQMLDLPG 128
Query: 317 VV 318
++
Sbjct: 129 II 130
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 28/129 (21%)
Query: 256 SHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCP 315
SH +K V + G PN GKSSL+N+L A V G TR + L +++ + P
Sbjct: 2 SHGMK----VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV----LREHIHIDGMP 53
Query: 316 GVVMLKSGENDASIAL------RNCKRIEKLD-----------DPVGPVK---EILNRCP 355
++ +G +AS + R + IE+ D D V P + E + R P
Sbjct: 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP 113
Query: 356 ANLLISLYK 364
A L I++ +
Sbjct: 114 AKLPITVVR 122
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGE 324
V + G PN GKSSL+N+L A V G TR + L +++ + P ++ +G
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV----LREHIHIDGXPLHIIDTAGL 62
Query: 325 NDASIAL------RNCKRIEKLD-----------DPVGPVK---EILNRCPANLLISLYK 364
+AS + R + IE+ D D V P + E + R PA L I++ +
Sbjct: 63 REASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 122
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK-----NVKLLDCPG 316
S+TV V+G VGKSS +NSL V V +P ++ V + + + ++D PG
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRV--SPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
Query: 317 VV 318
+V
Sbjct: 94 LV 95
>pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX
pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX
Length = 673
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 225 SSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSL 282
S + A+P N++ S A +IKL +NY S I K+ + + P+V + L + L
Sbjct: 249 SWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSEL 306
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK-----NVKLLDCPG 316
S+TV V+G VGKSS +NSL V V +P ++ V + + + ++D PG
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRV--SPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
Query: 317 VV 318
+V
Sbjct: 94 LV 95
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK-----NVKLLDCPG 316
S+TV V+G VGKSS +NSL V V +P ++ V + + + ++D PG
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRV--SPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
Query: 317 VV 318
+V
Sbjct: 94 LV 95
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 258 EIKKSITVGVIGLPNVGKSSLINSLKRC------HVANVGATPGLTRSMQEVQLDKN 308
+ ++I VG+ G+P VGKS+ I++L VA + P TR+ + DK
Sbjct: 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK-----NVKLLDCPG 316
S+TV V+G VGKSS +NSL V V +P ++ V + + + ++D PG
Sbjct: 35 SMTVLVLGKGGVGKSSTVNSLIGEQVVRV--SPFQAEGLRPVMVSRTMGGFTINIIDTPG 92
Query: 317 VV 318
+V
Sbjct: 93 LV 94
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 258 EIKKSITVGVIGLPNVGKSSLINSLKRC------HVANVGATPGLTRSMQEVQLDKN 308
+ ++I VG+ G+P VGKS+ I++L VA + P TR+ + DK
Sbjct: 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 18/108 (16%)
Query: 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGK 275
+Q+ GW T P+ QT L++LL N + E S+T+ V+G VGK
Sbjct: 4 QQQTVRGWSGINTFAPAT--QTK-------LLELLGNLKQ--EDVNSLTILVMGKGGVGK 52
Query: 276 SSLINSLKRCHVANVGATPGLTRSMQEVQLDKN-----VKLLDCPGVV 318
SS +NS+ V ++ +P + + V + ++ + ++D PG++
Sbjct: 53 SSTVNSIIGERVVSI--SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL 305
++ G++G PNVGKS+ ++ + + N P T +E ++
Sbjct: 20 NLKTGIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV 63
>pdb|2EG3|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
pdb|2EG3|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
pdb|2EG4|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
Length = 230
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 404 WNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEV 463
W EG PY T +++ P +V++L +++ + + ++S ++FQ
Sbjct: 92 WTEGWEPYAT---EKEEPKPERTEVVAKLRRDWLLTADEAARHPLLLDVRSPEEFQGKVH 148
Query: 464 LPCCP 468
PCCP
Sbjct: 149 PPCCP 153
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 267 VIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDKN-VKLLDCPGVVML 320
+IG PN GK++L N+L + VG PG+T + E L ++ +++ D PGV L
Sbjct: 6 LIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL 61
>pdb|2EG4|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
Length = 230
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 404 WNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEV 463
W EG PY T +++ P +V++L +++ + + ++S ++FQ
Sbjct: 92 WTEGWEPYAT---EKEEPKPERTEVVAKLRRDWLLTADEAARHPLLLDVRSPEEFQGKVH 148
Query: 464 LPCCP 468
PCCP
Sbjct: 149 PPCCP 153
>pdb|1XI8|A Chain A, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
pdb|1XI8|B Chain B, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
Length = 403
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 324 ENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFD--SVDDF 374
E SI L + K IE+++ P+K+ L R A +++ Y LP FD +VD +
Sbjct: 18 EEALSIVLNDLKEIEEVE--YVPLKDALGRVLAEDIVASYDLPPFDRAAVDGY 68
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 264 TVGVIGLPNVGKSSLINSLKR---CHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320
+GV G GKS++ LK HV NV R EV + KL++ G +L
Sbjct: 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV------DRIGHEVLEEVKEKLVELFGGSVL 67
Query: 321 KSGEND----ASIALRNCKRIEKLDDPVGP-----VKEILNRCPANLLI--SLYKLPSFD 369
+ G+ + A I + + ++KL+ V P V+EI+N+ ++I +L K D
Sbjct: 68 EDGKVNRKKLAGIVFESRENLKKLELLVHPLXKKRVQEIINKTSGLIVIEAALLKRXGLD 127
Query: 370 SVDDFLQKVATVR 382
+ D + V R
Sbjct: 128 QLCDHVITVVASR 140
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 265 VGVIGLPNVGKSSLINSL-----KRCH-VANVGATPGLTRSMQEVQLDKN 308
VG+ G+P VGKS+ I +L +R H VA + P TR+ + DK
Sbjct: 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKT 131
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 404 WNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNES 446
W +P Y P QG +++RIVS+LG+ +E Y E+
Sbjct: 261 WFNVNLPDYLRPMEEVQGSYADSRIVSKLGEAMGFSEDYIVEA 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,996,395
Number of Sequences: 62578
Number of extensions: 580147
Number of successful extensions: 1222
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 88
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)