Query 007611
Match_columns 596
No_of_seqs 452 out of 2732
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 12:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2484 GTPase [General functi 100.0 2.7E-92 5.8E-97 730.6 27.7 421 1-439 1-433 (435)
2 KOG2423 Nucleolar GTPase [Gene 100.0 3E-58 6.5E-63 473.6 22.5 304 91-418 146-462 (572)
3 KOG1424 Predicted GTP-binding 100.0 1.1E-45 2.3E-50 393.4 22.5 289 132-420 161-480 (562)
4 PRK09563 rbgA GTPase YlqF; Rev 100.0 2.2E-40 4.8E-45 343.4 27.5 254 134-416 13-280 (287)
5 TIGR03596 GTPase_YlqF ribosome 100.0 4.3E-40 9.2E-45 339.5 27.3 253 133-414 9-275 (276)
6 COG1161 Predicted GTPases [Gen 100.0 3.4E-40 7.3E-45 346.9 23.0 267 129-417 18-298 (322)
7 cd04178 Nucleostemin_like Nucl 100.0 1E-32 2.2E-37 265.7 16.9 171 147-317 1-172 (172)
8 cd01858 NGP_1 NGP-1. Autoanti 100.0 5.2E-32 1.1E-36 256.0 17.4 157 138-317 1-157 (157)
9 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 5.2E-27 1.1E-31 218.2 16.7 140 136-320 2-141 (141)
10 cd01849 YlqF_related_GTPase Yl 99.9 5.1E-26 1.1E-30 214.7 16.6 146 147-317 1-155 (155)
11 KOG2485 Conserved ATP/GTP bind 99.9 5.9E-25 1.3E-29 223.7 20.7 248 135-410 36-316 (335)
12 cd01856 YlqF YlqF. Proteins o 99.9 6.3E-25 1.4E-29 210.7 18.3 158 133-318 7-171 (171)
13 COG1159 Era GTPase [General fu 99.9 8.8E-26 1.9E-30 229.7 3.8 202 260-475 4-220 (298)
14 cd01859 MJ1464 MJ1464. This f 99.9 1.2E-23 2.6E-28 198.2 17.2 154 135-317 1-156 (156)
15 cd01855 YqeH YqeH. YqeH is an 99.9 8.5E-24 1.8E-28 205.8 13.9 152 135-317 24-190 (190)
16 PF08701 GN3L_Grn1: GNL3L/Grn1 99.9 4.4E-24 9.5E-29 178.0 9.7 73 16-89 1-73 (79)
17 COG1160 Predicted GTPases [Gen 99.9 1.6E-22 3.5E-27 216.0 16.5 234 129-390 67-328 (444)
18 PRK13796 GTPase YqeH; Provisio 99.9 5.9E-22 1.3E-26 212.2 16.2 157 134-320 58-223 (365)
19 TIGR03597 GTPase_YqeH ribosome 99.9 9.9E-22 2.2E-26 210.2 16.8 159 132-320 50-217 (360)
20 PRK12289 GTPase RsgA; Reviewed 99.8 1.2E-20 2.6E-25 200.7 15.1 145 142-322 86-239 (352)
21 TIGR00157 ribosome small subun 99.8 1.4E-19 3E-24 183.9 16.6 144 142-322 33-186 (245)
22 TIGR03594 GTPase_EngA ribosome 99.8 1.5E-19 3.2E-24 197.2 15.8 210 131-369 64-297 (429)
23 PRK00093 GTP-binding protein D 99.8 5.2E-19 1.1E-23 193.4 18.1 208 132-368 67-297 (435)
24 PRK03003 GTP-binding protein D 99.8 4.8E-19 1E-23 196.0 14.3 210 132-369 104-336 (472)
25 cd01854 YjeQ_engC YjeQ/EngC. 99.8 1.4E-18 3.1E-23 180.5 15.9 146 139-320 72-226 (287)
26 PRK12288 GTPase RsgA; Reviewed 99.8 2.1E-18 4.6E-23 183.4 17.4 150 135-321 110-271 (347)
27 PRK00098 GTPase RsgA; Reviewed 99.8 2.6E-18 5.7E-23 179.4 16.4 145 140-320 75-229 (298)
28 PRK09518 bifunctional cytidyla 99.8 2E-18 4.2E-23 199.8 16.9 211 131-369 340-575 (712)
29 TIGR00436 era GTP-binding prot 99.8 1.2E-19 2.6E-24 186.7 3.0 197 263-474 1-211 (270)
30 COG1160 Predicted GTPases [Gen 99.7 3.2E-18 7E-23 183.1 5.7 186 263-454 4-211 (444)
31 PRK00089 era GTPase Era; Revie 99.7 1E-17 2.2E-22 174.0 3.6 199 261-473 4-217 (292)
32 KOG1423 Ras-like GTPase ERA [C 99.7 6.8E-17 1.5E-21 164.3 6.2 199 260-482 70-288 (379)
33 PRK15494 era GTPase Era; Provi 99.6 6.5E-17 1.4E-21 171.8 3.7 196 261-473 51-262 (339)
34 PRK01889 GTPase RsgA; Reviewed 99.6 4.8E-15 1E-19 158.5 12.9 143 142-320 109-260 (356)
35 COG1162 Predicted GTPases [Gen 99.6 2.7E-14 5.8E-19 147.2 16.7 174 143-352 77-273 (301)
36 PRK12298 obgE GTPase CgtA; Rev 99.6 1E-15 2.3E-20 165.3 3.7 175 263-444 160-359 (390)
37 PF02421 FeoB_N: Ferrous iron 99.5 8.7E-15 1.9E-19 138.8 5.1 103 263-366 1-116 (156)
38 COG0486 ThdF Predicted GTPase 99.5 4.9E-14 1.1E-18 151.7 7.3 122 248-369 203-338 (454)
39 COG0218 Predicted GTPase [Gene 99.5 4.3E-14 9.3E-19 137.6 5.4 110 261-370 23-150 (200)
40 PF01926 MMR_HSR1: 50S ribosom 99.4 3.9E-13 8.4E-18 120.2 5.2 79 264-342 1-88 (116)
41 COG1084 Predicted GTPase [Gene 99.4 1E-12 2.2E-17 135.8 8.3 107 261-368 167-293 (346)
42 KOG1191 Mitochondrial GTPase [ 99.3 4E-12 8.8E-17 136.8 7.3 87 257-343 263-358 (531)
43 COG0536 Obg Predicted GTPase [ 99.3 4.7E-12 1E-16 131.4 7.1 110 264-374 161-294 (369)
44 PTZ00258 GTP-binding protein; 99.3 4.5E-12 9.8E-17 136.4 7.3 82 261-343 20-125 (390)
45 PRK09602 translation-associate 99.3 1.2E-11 2.7E-16 134.0 9.8 80 263-343 2-112 (396)
46 PRK12297 obgE GTPase CgtA; Rev 99.3 6E-12 1.3E-16 137.2 6.9 104 263-367 159-286 (424)
47 PRK09601 GTP-binding protein Y 99.3 6.7E-12 1.5E-16 133.7 6.8 80 263-343 3-106 (364)
48 PRK12299 obgE GTPase CgtA; Rev 99.2 8.9E-12 1.9E-16 132.3 7.2 107 262-369 158-285 (335)
49 TIGR03594 GTPase_EngA ribosome 99.2 3.5E-12 7.7E-17 139.3 3.7 106 264-369 1-121 (429)
50 cd01900 YchF YchF subfamily. 99.2 7.2E-12 1.6E-16 129.3 5.7 77 265-342 1-101 (274)
51 KOG1489 Predicted GTP-binding 99.2 4.9E-12 1.1E-16 129.9 4.3 142 260-405 194-359 (366)
52 PRK12296 obgE GTPase CgtA; Rev 99.2 7.5E-12 1.6E-16 138.4 5.7 84 259-343 156-246 (500)
53 PF03193 DUF258: Protein of un 99.2 1.1E-10 2.5E-15 111.1 10.0 74 238-321 21-101 (161)
54 TIGR03156 GTP_HflX GTP-binding 99.2 5.3E-11 1.1E-15 127.3 7.8 108 261-369 188-315 (351)
55 TIGR02729 Obg_CgtA Obg family 99.2 4.4E-11 9.5E-16 126.8 6.9 108 261-369 156-287 (329)
56 COG1163 DRG Predicted GTPase [ 99.1 2.2E-11 4.7E-16 125.6 4.3 83 261-344 62-151 (365)
57 PRK05291 trmE tRNA modificatio 99.1 6.3E-11 1.4E-15 130.7 7.8 112 258-369 211-335 (449)
58 PRK09518 bifunctional cytidyla 99.1 6.7E-11 1.5E-15 137.4 7.7 171 181-369 209-397 (712)
59 TIGR00450 mnmE_trmE_thdF tRNA 99.1 9E-11 1.9E-15 129.1 8.2 124 245-369 187-324 (442)
60 cd04163 Era Era subfamily. Er 99.1 9E-11 1.9E-15 108.5 6.5 110 262-371 3-127 (168)
61 PRK00093 GTP-binding protein D 99.1 5E-11 1.1E-15 130.6 5.6 107 263-369 2-123 (435)
62 PRK04213 GTP-binding protein; 99.1 2.2E-10 4.8E-15 111.9 9.5 56 262-319 9-64 (201)
63 TIGR03598 GTPase_YsxC ribosome 99.1 1.6E-10 3.4E-15 111.4 7.5 109 261-369 17-143 (179)
64 PRK03003 GTP-binding protein D 99.1 6.7E-11 1.4E-15 131.3 5.7 109 261-369 37-160 (472)
65 cd01853 Toc34_like Toc34-like 99.1 3.9E-10 8.4E-15 115.2 10.8 62 259-320 28-92 (249)
66 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 1.1E-10 2.4E-15 114.3 6.5 60 263-322 1-64 (196)
67 PRK00454 engB GTP-binding prot 99.1 9.2E-11 2E-15 113.6 5.2 60 261-320 23-83 (196)
68 COG0012 Predicted GTPase, prob 99.1 1.2E-10 2.5E-15 123.1 5.6 81 262-343 2-107 (372)
69 cd01898 Obg Obg subfamily. Th 99.1 1.9E-10 4.2E-15 108.3 5.8 104 264-368 2-127 (170)
70 cd01894 EngA1 EngA1 subfamily. 99.0 2.8E-10 6.1E-15 105.1 5.1 104 266-369 1-119 (157)
71 cd01895 EngA2 EngA2 subfamily. 99.0 5.4E-10 1.2E-14 104.5 7.0 108 262-369 2-127 (174)
72 TIGR00991 3a0901s02IAP34 GTP-b 99.0 5.6E-10 1.2E-14 116.5 7.7 76 243-320 21-99 (313)
73 cd01881 Obg_like The Obg-like 99.0 7.5E-10 1.6E-14 104.6 6.8 76 267-343 1-84 (176)
74 PRK11058 GTPase HflX; Provisio 99.0 5.4E-10 1.2E-14 122.4 6.5 106 263-369 198-323 (426)
75 KOG1491 Predicted GTP-binding 99.0 5.2E-10 1.1E-14 116.0 5.5 80 261-341 19-122 (391)
76 cd04164 trmE TrmE (MnmE, ThdF, 98.9 1.2E-09 2.6E-14 100.7 6.7 106 263-368 2-120 (157)
77 COG0370 FeoB Fe2+ transport sy 98.9 1.5E-09 3.2E-14 121.9 8.4 105 262-367 3-120 (653)
78 TIGR00092 GTP-binding protein 98.9 2.9E-09 6.4E-14 113.8 9.4 80 263-342 3-106 (368)
79 PRK09554 feoB ferrous iron tra 98.9 2.7E-09 5.9E-14 124.5 9.7 106 262-368 3-125 (772)
80 cd01899 Ygr210 Ygr210 subfamil 98.9 1.4E-09 3E-14 114.9 5.8 78 265-343 1-109 (318)
81 TIGR00993 3a0901s04IAP86 chlor 98.8 9E-09 1.9E-13 115.7 9.8 63 259-321 115-180 (763)
82 KOG1490 GTP-binding protein CR 98.8 3.3E-09 7.2E-14 114.6 5.8 151 244-397 149-336 (620)
83 cd04166 CysN_ATPS CysN_ATPS su 98.8 7.7E-10 1.7E-14 109.6 0.5 103 264-369 1-144 (208)
84 cd04171 SelB SelB subfamily. 98.8 4E-09 8.6E-14 98.3 5.2 104 263-369 1-118 (164)
85 cd01896 DRG The developmentall 98.8 6.5E-09 1.4E-13 105.1 7.1 79 264-343 2-87 (233)
86 COG1159 Era GTPase [General fu 98.8 3.2E-08 7E-13 101.8 11.7 109 125-257 65-174 (298)
87 cd01879 FeoB Ferrous iron tran 98.8 5.8E-09 1.3E-13 96.7 5.5 101 267-368 1-114 (158)
88 COG2262 HflX GTPases [General 98.8 5.4E-09 1.2E-13 111.3 4.8 111 261-372 191-321 (411)
89 TIGR00231 small_GTP small GTP- 98.8 8.3E-09 1.8E-13 93.9 5.3 55 263-318 2-61 (161)
90 PRK09866 hypothetical protein; 98.8 1.5E-08 3.2E-13 113.7 8.1 99 307-405 230-345 (741)
91 cd01886 EF-G Elongation factor 98.7 1.7E-08 3.8E-13 104.3 6.8 118 264-384 1-146 (270)
92 cd00880 Era_like Era (E. coli 98.7 2.1E-08 4.6E-13 91.1 6.4 103 267-369 1-118 (163)
93 cd04104 p47_IIGP_like p47 (47- 98.7 2.8E-08 6E-13 97.7 7.4 107 263-369 2-121 (197)
94 cd01878 HflX HflX subfamily. 98.7 3.1E-08 6.6E-13 97.1 7.7 108 261-369 40-167 (204)
95 cd00881 GTP_translation_factor 98.7 1.3E-08 2.9E-13 97.0 4.9 103 264-369 1-128 (189)
96 cd01897 NOG NOG1 is a nucleola 98.7 1.9E-08 4E-13 94.7 5.5 55 264-319 2-59 (168)
97 cd01890 LepA LepA subfamily. 98.7 1.6E-08 3.5E-13 96.3 4.6 115 264-381 2-146 (179)
98 cd01887 IF2_eIF5B IF2/eIF5B (i 98.7 2.3E-08 5E-13 93.8 5.3 101 264-368 2-115 (168)
99 cd01876 YihA_EngB The YihA (En 98.6 3.4E-08 7.4E-13 91.6 5.6 56 265-320 2-58 (170)
100 cd01889 SelB_euk SelB subfamil 98.6 9.9E-09 2.2E-13 99.9 2.1 104 263-369 1-134 (192)
101 PF04548 AIG1: AIG1 family; I 98.6 3.3E-08 7.2E-13 98.4 5.0 60 263-322 1-64 (212)
102 PRK12317 elongation factor 1-a 98.6 2.2E-08 4.7E-13 109.8 3.8 107 260-369 4-153 (425)
103 cd01884 EF_Tu EF-Tu subfamily. 98.6 7.4E-08 1.6E-12 94.9 7.0 105 262-369 2-132 (195)
104 PRK15467 ethanolamine utilizat 98.6 5.1E-08 1.1E-12 92.5 4.1 95 264-367 3-103 (158)
105 cd00154 Rab Rab family. Rab G 98.5 7.9E-08 1.7E-12 88.1 4.8 103 263-368 1-118 (159)
106 cd04154 Arl2 Arl2 subfamily. 98.5 8.8E-08 1.9E-12 91.3 5.0 104 261-368 13-128 (173)
107 cd01861 Rab6 Rab6 subfamily. 98.5 1.1E-07 2.5E-12 88.6 5.4 101 264-368 2-118 (161)
108 PF00350 Dynamin_N: Dynamin fa 98.5 8E-08 1.7E-12 90.9 4.2 32 265-296 1-32 (168)
109 CHL00071 tufA elongation facto 98.5 1.6E-07 3.5E-12 102.6 6.7 107 260-369 10-142 (409)
110 TIGR02836 spore_IV_A stage IV 98.5 3.1E-07 6.8E-12 98.7 8.6 121 261-381 16-207 (492)
111 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.5 1.5E-07 3.2E-12 90.1 5.1 102 262-368 15-129 (174)
112 TIGR00436 era GTP-binding prot 98.5 1.1E-06 2.4E-11 90.6 11.8 103 130-257 64-166 (270)
113 cd01851 GBP Guanylate-binding 98.5 2.2E-07 4.7E-12 93.5 5.9 61 262-322 7-75 (224)
114 TIGR00437 feoB ferrous iron tr 98.5 2.4E-07 5.2E-12 105.7 6.9 98 269-367 1-111 (591)
115 cd01866 Rab2 Rab2 subfamily. 98.4 5.8E-07 1.3E-11 85.2 8.2 103 263-368 5-122 (168)
116 cd04156 ARLTS1 ARLTS1 subfamil 98.4 2.8E-07 6E-12 86.0 5.7 101 264-367 1-113 (160)
117 smart00178 SAR Sar1p-like memb 98.4 4.7E-07 1E-11 87.7 7.2 102 261-367 16-130 (184)
118 cd01891 TypA_BipA TypA (tyrosi 98.4 5.1E-07 1.1E-11 88.0 7.4 102 264-368 4-130 (194)
119 PRK12739 elongation factor G; 98.4 3.1E-07 6.8E-12 106.7 6.5 119 262-383 8-154 (691)
120 cd04155 Arl3 Arl3 subfamily. 98.4 4.4E-07 9.4E-12 85.9 6.0 89 247-342 2-90 (173)
121 cd04151 Arl1 Arl1 subfamily. 98.4 2.2E-07 4.7E-12 87.0 3.8 101 264-369 1-114 (158)
122 TIGR00484 EF-G translation elo 98.4 5.5E-07 1.2E-11 104.7 8.0 118 263-383 11-156 (689)
123 COG3596 Predicted GTPase [Gene 98.4 2.2E-07 4.8E-12 94.7 4.1 64 260-324 37-104 (296)
124 cd04157 Arl6 Arl6 subfamily. 98.4 4.8E-07 1E-11 84.3 5.8 101 264-368 1-117 (162)
125 PRK00089 era GTPase Era; Revie 98.4 2.7E-06 5.8E-11 88.5 11.7 104 129-256 68-172 (292)
126 cd00878 Arf_Arl Arf (ADP-ribos 98.4 5.7E-07 1.2E-11 83.8 6.1 101 264-368 1-113 (158)
127 cd04142 RRP22 RRP22 subfamily. 98.4 4.8E-07 1E-11 89.1 5.7 105 263-368 1-129 (198)
128 PRK00007 elongation factor G; 98.4 5.8E-07 1.3E-11 104.5 7.0 118 263-383 11-156 (693)
129 KOG1486 GTP-binding protein DR 98.4 1.9E-07 4.2E-12 93.6 2.6 82 262-344 62-150 (364)
130 cd04160 Arfrp1 Arfrp1 subfamil 98.3 4.8E-07 1E-11 85.0 5.0 102 264-368 1-120 (167)
131 PF00009 GTP_EFTU: Elongation 98.3 2.7E-06 5.9E-11 82.7 10.4 99 133-255 81-187 (188)
132 cd04168 TetM_like Tet(M)-like 98.3 9.3E-07 2E-11 89.7 7.1 113 264-379 1-141 (237)
133 KOG2486 Predicted GTPase [Gene 98.3 6.3E-07 1.4E-11 91.3 5.7 61 261-321 135-197 (320)
134 PLN03118 Rab family protein; P 98.3 8.6E-07 1.9E-11 87.7 6.6 81 260-343 12-95 (211)
135 PRK15494 era GTPase Era; Provi 98.3 3.2E-06 6.9E-11 90.3 11.3 104 129-257 115-218 (339)
136 PLN03127 Elongation factor Tu; 98.3 1.3E-06 2.9E-11 96.5 8.3 108 259-369 58-191 (447)
137 cd04145 M_R_Ras_like M-Ras/R-R 98.3 5.8E-07 1.3E-11 83.9 4.7 102 262-368 2-120 (164)
138 cd01863 Rab18 Rab18 subfamily. 98.3 1E-06 2.3E-11 82.2 6.3 78 263-343 1-82 (161)
139 TIGR02528 EutP ethanolamine ut 98.3 1.8E-07 4E-12 85.8 1.2 95 264-368 2-101 (142)
140 cd04170 EF-G_bact Elongation f 98.3 9.7E-07 2.1E-11 90.9 6.6 103 264-369 1-130 (268)
141 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.3 1.1E-06 2.3E-11 85.1 6.4 104 262-368 3-122 (183)
142 cd01862 Rab7 Rab7 subfamily. 98.3 2.4E-06 5.3E-11 80.3 8.4 103 263-368 1-122 (172)
143 PRK12735 elongation factor Tu; 98.3 9.9E-07 2.1E-11 96.1 6.5 107 260-369 10-142 (396)
144 cd04139 RalA_RalB RalA/RalB su 98.3 7.3E-07 1.6E-11 83.0 4.7 102 263-369 1-119 (164)
145 PRK05506 bifunctional sulfate 98.3 6.3E-07 1.4E-11 103.2 5.0 109 258-369 20-171 (632)
146 smart00173 RAS Ras subfamily o 98.3 4.5E-07 9.8E-12 84.9 3.1 100 264-368 2-118 (164)
147 cd04169 RF3 RF3 subfamily. Pe 98.3 2.5E-06 5.5E-11 88.1 8.8 102 264-368 4-136 (267)
148 cd01860 Rab5_related Rab5-rela 98.3 1.7E-06 3.6E-11 80.9 6.4 78 263-343 2-83 (163)
149 PRK00049 elongation factor Tu; 98.3 1.1E-06 2.5E-11 95.6 6.0 107 260-369 10-142 (396)
150 cd04163 Era Era subfamily. Er 98.2 1.2E-05 2.6E-10 74.1 11.4 95 135-253 72-167 (168)
151 cd01868 Rab11_like Rab11-like. 98.2 2.2E-06 4.8E-11 80.4 6.4 57 263-319 4-64 (165)
152 PF05049 IIGP: Interferon-indu 98.2 2.2E-06 4.7E-11 92.1 6.8 62 261-323 34-102 (376)
153 cd01882 BMS1 Bms1. Bms1 is an 98.2 3.8E-06 8.2E-11 84.5 8.0 103 260-370 37-148 (225)
154 cd00876 Ras Ras family. The R 98.2 6.8E-07 1.5E-11 82.7 2.4 101 264-369 1-118 (160)
155 cd04137 RheB Rheb (Ras Homolog 98.2 1.1E-06 2.4E-11 83.9 3.8 55 263-319 2-61 (180)
156 smart00175 RAB Rab subfamily o 98.2 2.9E-06 6.3E-11 79.1 6.1 77 263-343 1-82 (164)
157 PF10662 PduV-EutP: Ethanolami 98.2 1.1E-05 2.3E-10 75.7 9.7 99 126-252 44-143 (143)
158 PRK05306 infB translation init 98.2 3.7E-06 8E-11 98.4 8.1 115 260-378 288-413 (787)
159 cd04124 RabL2 RabL2 subfamily. 98.2 5.7E-06 1.2E-10 77.9 7.9 102 263-367 1-116 (161)
160 cd04161 Arl2l1_Arl13_like Arl2 98.2 2.5E-06 5.4E-11 81.2 5.5 100 264-368 1-113 (167)
161 cd01894 EngA1 EngA1 subfamily. 98.2 1.9E-05 4E-10 72.8 11.2 61 132-194 63-123 (157)
162 cd04119 RJL RJL (RabJ-Like) su 98.1 3.6E-06 7.8E-11 78.5 6.2 78 263-343 1-82 (168)
163 PRK09866 hypothetical protein; 98.1 1.4E-05 3E-10 90.3 11.8 99 135-255 248-353 (741)
164 cd04112 Rab26 Rab26 subfamily. 98.1 3.5E-06 7.5E-11 81.9 6.2 102 263-368 1-119 (191)
165 TIGR00487 IF-2 translation ini 98.1 4.2E-06 9.1E-11 95.4 7.7 111 260-374 85-207 (587)
166 cd04177 RSR1 RSR1 subgroup. R 98.1 2.2E-06 4.8E-11 81.1 4.2 56 263-320 2-62 (168)
167 PF00009 GTP_EFTU: Elongation 98.1 1.9E-06 4.1E-11 83.7 3.8 105 261-368 2-135 (188)
168 PTZ00133 ADP-ribosylation fact 98.1 5.7E-06 1.2E-10 80.1 7.1 78 261-343 16-94 (182)
169 cd04136 Rap_like Rap-like subf 98.1 2.3E-06 4.9E-11 79.8 4.0 75 263-342 2-81 (163)
170 cd01850 CDC_Septin CDC/Septin. 98.1 4.2E-06 9.1E-11 86.9 6.4 59 262-320 4-76 (276)
171 TIGR00475 selB selenocysteine- 98.1 2.5E-06 5.4E-11 97.3 5.1 104 263-369 1-117 (581)
172 TIGR02528 EutP ethanolamine ut 98.1 1.4E-05 2.9E-10 73.4 8.9 53 134-191 51-103 (142)
173 cd01867 Rab8_Rab10_Rab13_like 98.1 5.3E-06 1.1E-10 78.5 6.4 78 262-342 3-84 (167)
174 cd01864 Rab19 Rab19 subfamily. 98.1 5.3E-06 1.2E-10 78.1 6.4 78 262-342 3-84 (165)
175 cd04150 Arf1_5_like Arf1-Arf5- 98.1 4.6E-06 9.9E-11 78.7 5.4 77 263-344 1-78 (159)
176 TIGR00503 prfC peptide chain r 98.1 9.7E-06 2.1E-10 91.4 8.9 121 261-384 10-162 (527)
177 PRK05124 cysN sulfate adenylyl 98.1 6.6E-06 1.4E-10 91.7 7.4 108 259-369 24-174 (474)
178 cd01895 EngA2 EngA2 subfamily. 98.1 3.3E-05 7E-10 72.0 11.0 93 139-252 78-172 (174)
179 cd00879 Sar1 Sar1 subfamily. 98.1 5E-06 1.1E-10 80.2 5.6 77 261-342 18-95 (190)
180 TIGR00485 EF-Tu translation el 98.1 6.4E-06 1.4E-10 89.6 7.1 107 260-369 10-142 (394)
181 TIGR00491 aIF-2 translation in 98.1 4.4E-06 9.5E-11 95.2 6.0 104 261-369 3-135 (590)
182 cd01898 Obg Obg subfamily. Th 98.1 1.3E-05 2.9E-10 75.3 8.2 93 135-252 68-168 (170)
183 cd04118 Rab24 Rab24 subfamily. 98.1 6.2E-06 1.3E-10 79.8 6.0 77 263-342 1-82 (193)
184 cd01888 eIF2_gamma eIF2-gamma 98.1 3.3E-05 7.2E-10 76.2 11.3 105 133-255 94-199 (203)
185 cd04113 Rab4 Rab4 subfamily. 98.0 7.1E-06 1.5E-10 76.6 6.0 78 263-343 1-82 (161)
186 PRK12736 elongation factor Tu; 98.0 5.5E-06 1.2E-10 90.2 5.9 107 260-369 10-142 (394)
187 TIGR01393 lepA GTP-binding pro 98.0 5.5E-06 1.2E-10 94.7 6.1 138 264-405 5-172 (595)
188 KOG1547 Septin CDC10 and relat 98.0 6.1E-06 1.3E-10 82.5 5.6 80 239-320 25-117 (336)
189 cd01865 Rab3 Rab3 subfamily. 98.0 8.7E-06 1.9E-10 76.8 6.4 77 263-342 2-82 (165)
190 cd04146 RERG_RasL11_like RERG/ 98.0 1.1E-05 2.5E-10 75.8 7.0 76 264-343 1-81 (165)
191 cd04138 H_N_K_Ras_like H-Ras/N 98.0 8.7E-06 1.9E-10 75.4 6.1 55 263-319 2-61 (162)
192 cd04149 Arf6 Arf6 subfamily. 98.0 7.5E-06 1.6E-10 78.1 5.8 79 261-344 8-87 (168)
193 cd01885 EF2 EF2 (for archaea a 98.0 1.8E-05 3.9E-10 79.7 8.5 102 264-368 2-138 (222)
194 cd04106 Rab23_lke Rab23-like s 98.0 7.8E-06 1.7E-10 76.2 5.5 55 263-318 1-62 (162)
195 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.0 1.1E-05 2.4E-10 75.9 6.5 77 263-343 3-84 (166)
196 PRK10512 selenocysteinyl-tRNA- 98.0 4E-06 8.7E-11 96.1 4.1 104 263-369 1-118 (614)
197 cd00881 GTP_translation_factor 98.0 4.3E-05 9.4E-10 72.7 10.6 113 135-255 75-187 (189)
198 cd00882 Ras_like_GTPase Ras-li 98.0 2.7E-06 5.9E-11 75.9 2.1 98 267-369 1-116 (157)
199 cd04171 SelB SelB subfamily. 98.0 4.5E-05 9.9E-10 70.8 10.5 94 133-252 62-163 (164)
200 PLN03126 Elongation factor Tu; 98.0 1.1E-05 2.4E-10 89.8 7.2 107 260-369 79-211 (478)
201 cd04107 Rab32_Rab38 Rab38/Rab3 98.0 2.5E-05 5.5E-10 76.5 8.8 78 263-343 1-83 (201)
202 KOG0410 Predicted GTP binding 98.0 3.5E-06 7.7E-11 87.4 2.8 85 261-346 177-270 (410)
203 cd04159 Arl10_like Arl10-like 98.0 1E-05 2.2E-10 74.2 5.5 75 265-343 2-77 (159)
204 CHL00189 infB translation init 98.0 6E-06 1.3E-10 95.9 4.8 106 260-369 242-361 (742)
205 cd00877 Ran Ran (Ras-related n 98.0 1.4E-05 3E-10 76.0 6.3 102 263-367 1-116 (166)
206 PRK04004 translation initiatio 98.0 1.1E-05 2.4E-10 92.1 6.6 103 261-368 5-136 (586)
207 smart00053 DYNc Dynamin, GTPas 98.0 3.5E-05 7.6E-10 78.5 9.5 25 262-286 26-50 (240)
208 PRK00741 prfC peptide chain re 98.0 2.3E-05 4.9E-10 88.4 8.9 120 261-383 9-160 (526)
209 cd01893 Miro1 Miro1 subfamily. 98.0 7.9E-06 1.7E-10 77.3 4.5 55 263-319 1-59 (166)
210 cd01892 Miro2 Miro2 subfamily. 97.9 1E-05 2.2E-10 77.1 5.3 104 261-368 3-121 (169)
211 cd00157 Rho Rho (Ras homology) 97.9 1.6E-05 3.5E-10 74.7 6.2 77 263-343 1-81 (171)
212 cd04175 Rap1 Rap1 subgroup. T 97.9 1E-05 2.3E-10 75.9 4.9 73 263-340 2-79 (164)
213 cd04147 Ras_dva Ras-dva subfam 97.9 1.4E-05 3E-10 78.3 5.9 101 264-369 1-118 (198)
214 cd04123 Rab21 Rab21 subfamily. 97.9 1.4E-05 3.1E-10 74.0 5.4 76 263-342 1-81 (162)
215 cd04110 Rab35 Rab35 subfamily. 97.9 1.8E-05 3.9E-10 77.6 6.3 78 262-342 6-87 (199)
216 cd04125 RabA_like RabA-like su 97.9 1.7E-05 3.7E-10 76.7 6.1 78 263-343 1-82 (188)
217 PRK10218 GTP-binding protein; 97.9 1.9E-05 4E-10 90.4 7.3 103 263-368 6-133 (607)
218 KOG1487 GTP-binding protein DR 97.9 4.9E-06 1.1E-10 84.0 2.2 83 263-346 60-149 (358)
219 cd04165 GTPBP1_like GTPBP1-lik 97.9 6.7E-05 1.5E-09 75.6 10.5 119 133-253 95-221 (224)
220 cd04140 ARHI_like ARHI subfami 97.9 1.9E-05 4.1E-10 74.5 6.1 55 263-319 2-61 (165)
221 cd04116 Rab9 Rab9 subfamily. 97.9 2E-05 4.3E-10 74.5 6.2 57 262-318 5-65 (170)
222 cd04122 Rab14 Rab14 subfamily. 97.9 2.1E-05 4.6E-10 74.1 6.4 76 263-343 3-84 (166)
223 cd04109 Rab28 Rab28 subfamily. 97.9 2.4E-05 5.2E-10 77.7 6.8 78 263-344 1-84 (215)
224 cd04135 Tc10 TC10 subfamily. 97.9 2.4E-05 5.1E-10 74.1 6.1 55 263-319 1-60 (174)
225 cd04167 Snu114p Snu114p subfam 97.9 2.2E-05 4.8E-10 77.9 6.0 102 264-368 2-136 (213)
226 PRK15467 ethanolamine utilizat 97.9 9.3E-05 2E-09 70.1 10.0 92 133-254 52-146 (158)
227 cd04158 ARD1 ARD1 subfamily. 97.9 2.7E-05 5.8E-10 74.0 6.2 73 264-343 1-76 (169)
228 cd04144 Ras2 Ras2 subfamily. 97.8 1.8E-05 4E-10 76.8 5.2 72 264-340 1-77 (190)
229 cd04105 SR_beta Signal recogni 97.8 3.1E-05 6.7E-10 76.6 6.8 101 264-369 2-123 (203)
230 cd01883 EF1_alpha Eukaryotic e 97.8 2.2E-05 4.7E-10 78.5 5.6 102 264-368 1-150 (219)
231 cd01888 eIF2_gamma eIF2-gamma 97.8 8.4E-06 1.8E-10 80.5 2.5 23 263-285 1-23 (203)
232 cd04115 Rab33B_Rab33A Rab33B/R 97.8 3.3E-05 7.2E-10 73.3 6.3 80 262-343 2-85 (170)
233 KOG1249 Predicted GTPases [Gen 97.8 4.1E-05 9E-10 84.1 7.7 158 131-302 96-264 (572)
234 PF00735 Septin: Septin; Inte 97.8 2.5E-05 5.5E-10 81.3 5.6 59 262-320 4-76 (281)
235 cd01889 SelB_euk SelB subfamil 97.8 0.00015 3.2E-09 70.6 10.6 96 134-253 80-184 (192)
236 cd04176 Rap2 Rap2 subgroup. T 97.8 3.7E-05 8E-10 71.9 6.0 73 263-340 2-79 (163)
237 TIGR02729 Obg_CgtA Obg family 97.8 7.3E-05 1.6E-09 79.6 8.9 96 135-253 225-327 (329)
238 PLN03110 Rab GTPase; Provision 97.8 3.8E-05 8.2E-10 76.6 6.3 79 261-342 11-93 (216)
239 cd04114 Rab30 Rab30 subfamily. 97.8 3.6E-05 7.7E-10 72.4 5.7 78 262-343 7-89 (169)
240 smart00177 ARF ARF-like small 97.8 4.6E-05 9.9E-10 73.1 6.4 78 261-343 12-90 (175)
241 cd04101 RabL4 RabL4 (Rab-like4 97.8 4.3E-05 9.2E-10 71.5 6.0 78 263-343 1-85 (164)
242 cd04127 Rab27A Rab27a subfamil 97.8 4.3E-05 9.4E-10 72.8 6.0 78 262-342 4-95 (180)
243 PTZ00416 elongation factor 2; 97.7 5E-05 1.1E-09 90.2 7.6 104 262-368 19-157 (836)
244 cd04164 trmE TrmE (MnmE, ThdF, 97.7 0.00013 2.8E-09 67.0 8.8 86 135-253 70-155 (157)
245 cd01881 Obg_like The Obg-like 97.7 0.00011 2.4E-09 69.1 8.3 63 135-197 64-141 (176)
246 cd04143 Rhes_like Rhes_like su 97.7 9E-06 1.9E-10 83.1 0.7 55 263-319 1-60 (247)
247 cd00880 Era_like Era (E. coli 97.7 0.00022 4.8E-09 64.5 9.8 62 136-199 66-127 (163)
248 cd04132 Rho4_like Rho4-like su 97.7 5.1E-05 1.1E-09 73.0 5.8 55 263-318 1-60 (187)
249 COG0486 ThdF Predicted GTPase 97.7 0.00014 3.1E-09 79.3 9.7 100 126-255 277-376 (454)
250 smart00174 RHO Rho (Ras homolo 97.7 4.6E-05 9.9E-10 72.1 5.4 54 265-319 1-58 (174)
251 PRK12298 obgE GTPase CgtA; Rev 97.7 0.0001 2.3E-09 80.2 8.7 96 135-256 227-334 (390)
252 PLN00223 ADP-ribosylation fact 97.7 5.5E-05 1.2E-09 73.2 5.7 79 261-344 16-95 (181)
253 PF08477 Miro: Miro-like prote 97.7 4.6E-05 1E-09 67.6 4.9 77 264-343 1-83 (119)
254 PTZ00327 eukaryotic translatio 97.7 0.00027 5.8E-09 78.5 11.8 106 132-255 127-233 (460)
255 TIGR01394 TypA_BipA GTP-bindin 97.7 5.9E-05 1.3E-09 86.2 6.8 112 264-378 3-140 (594)
256 cd04117 Rab15 Rab15 subfamily. 97.7 6.9E-05 1.5E-09 70.6 6.0 56 263-318 1-60 (161)
257 cd04148 RGK RGK subfamily. Th 97.7 5.1E-05 1.1E-09 76.0 5.4 56 263-318 1-61 (221)
258 PF10662 PduV-EutP: Ethanolami 97.7 2.3E-05 5.1E-10 73.4 2.6 96 264-369 3-103 (143)
259 PRK05433 GTP-binding protein L 97.7 2.9E-05 6.2E-10 89.0 3.9 136 263-402 8-173 (600)
260 cd01879 FeoB Ferrous iron tran 97.7 0.00015 3.3E-09 67.0 8.1 81 144-253 73-155 (158)
261 PTZ00369 Ras-like protein; Pro 97.7 7.7E-05 1.7E-09 72.4 6.1 76 262-341 5-84 (189)
262 cd04111 Rab39 Rab39 subfamily. 97.7 7.6E-05 1.6E-09 74.2 6.1 77 263-343 3-85 (211)
263 TIGR00483 EF-1_alpha translati 97.6 6.6E-05 1.4E-09 82.6 6.2 107 260-369 5-155 (426)
264 PRK13351 elongation factor G; 97.6 0.0001 2.2E-09 85.9 8.1 118 262-382 8-153 (687)
265 cd04162 Arl9_Arfrp2_like Arl9/ 97.6 0.0001 2.2E-09 70.0 6.6 99 265-368 2-112 (164)
266 TIGR02034 CysN sulfate adenyly 97.6 5.2E-05 1.1E-09 83.0 5.2 104 263-369 1-147 (406)
267 PLN03108 Rab family protein; P 97.6 8.9E-05 1.9E-09 73.5 6.4 79 262-343 6-88 (210)
268 TIGR00490 aEF-2 translation el 97.6 5.4E-05 1.2E-09 88.6 5.5 104 262-368 19-151 (720)
269 cd04108 Rab36_Rab34 Rab34/Rab3 97.6 9.4E-05 2E-09 70.6 6.1 77 264-343 2-82 (170)
270 PRK12299 obgE GTPase CgtA; Rev 97.6 0.00023 4.9E-09 76.1 9.4 97 134-255 225-328 (335)
271 PRK12296 obgE GTPase CgtA; Rev 97.6 0.00026 5.6E-09 79.1 10.2 97 134-255 225-340 (500)
272 cd01884 EF_Tu EF-Tu subfamily. 97.6 0.00052 1.1E-08 67.6 11.2 59 133-193 76-135 (195)
273 cd01890 LepA LepA subfamily. 97.6 0.00052 1.1E-08 65.2 10.8 93 135-253 80-175 (179)
274 cd01870 RhoA_like RhoA-like su 97.6 0.00011 2.4E-09 69.6 6.1 55 263-318 2-60 (175)
275 cd04126 Rab20 Rab20 subfamily. 97.6 8.2E-05 1.8E-09 74.8 5.4 75 263-342 1-76 (220)
276 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.6 0.00013 2.8E-09 69.9 6.3 74 262-340 2-80 (172)
277 PLN03071 GTP-binding nuclear p 97.6 0.00014 3E-09 72.7 6.6 60 261-320 12-75 (219)
278 cd01893 Miro1 Miro1 subfamily. 97.6 0.00025 5.3E-09 67.0 7.9 96 136-253 61-162 (166)
279 TIGR03156 GTP_HflX GTP-binding 97.6 0.00034 7.3E-09 75.2 9.9 86 139-252 262-349 (351)
280 PLN00116 translation elongatio 97.5 0.00014 3.1E-09 86.5 7.5 117 243-368 6-163 (843)
281 PTZ00141 elongation factor 1- 97.5 0.00011 2.3E-09 81.5 6.1 105 260-367 5-157 (446)
282 TIGR03680 eif2g_arch translati 97.5 0.00065 1.4E-08 74.4 12.0 105 133-255 91-196 (406)
283 cd01891 TypA_BipA TypA (tyrosi 97.5 0.00082 1.8E-08 65.4 10.9 66 134-201 77-145 (194)
284 cd04156 ARLTS1 ARLTS1 subfamil 97.5 0.00036 7.9E-09 64.9 7.7 56 135-190 57-115 (160)
285 COG2262 HflX GTPases [General 97.5 0.00034 7.3E-09 75.3 8.2 96 131-255 258-356 (411)
286 COG1100 GTPase SAR1 and relate 97.5 0.00018 4E-09 70.8 5.8 58 263-320 6-67 (219)
287 PRK04000 translation initiatio 97.4 0.0008 1.7E-08 73.8 11.2 97 133-255 96-201 (411)
288 PRK10512 selenocysteinyl-tRNA- 97.4 0.00099 2.2E-08 76.7 12.3 96 133-255 62-166 (614)
289 cd04134 Rho3 Rho3 subfamily. 97.4 0.00024 5.1E-09 69.0 6.2 55 264-319 2-60 (189)
290 COG4917 EutP Ethanolamine util 97.4 0.00061 1.3E-08 62.2 8.2 97 128-252 47-143 (148)
291 cd04157 Arl6 Arl6 subfamily. 97.4 0.00044 9.6E-09 64.2 7.7 92 137-251 60-160 (162)
292 cd04130 Wrch_1 Wrch-1 subfamil 97.4 0.00019 4.2E-09 68.2 5.4 73 263-340 1-78 (173)
293 PRK13768 GTPase; Provisional 97.4 0.0005 1.1E-08 70.5 8.7 119 136-257 117-249 (253)
294 PRK07560 elongation factor EF- 97.4 0.0002 4.4E-09 84.0 6.4 104 262-368 20-152 (731)
295 CHL00071 tufA elongation facto 97.4 0.0011 2.4E-08 72.6 11.6 59 133-193 86-145 (409)
296 PLN03127 Elongation factor Tu; 97.4 0.0016 3.5E-08 72.2 12.6 58 134-193 136-194 (447)
297 cd01878 HflX HflX subfamily. 97.4 0.0013 2.7E-08 64.4 10.6 58 138-195 113-172 (204)
298 PRK00454 engB GTP-binding prot 97.4 0.0011 2.3E-08 64.0 9.9 87 142-255 103-194 (196)
299 cd01861 Rab6 Rab6 subfamily. 97.4 0.00057 1.2E-08 63.5 7.7 96 134-252 61-159 (161)
300 cd04160 Arfrp1 Arfrp1 subfamil 97.4 0.00049 1.1E-08 64.5 7.2 58 135-192 63-123 (167)
301 cd01862 Rab7 Rab7 subfamily. 97.4 0.00074 1.6E-08 63.4 8.4 56 134-189 61-122 (172)
302 cd04124 RabL2 RabL2 subfamily. 97.3 0.0011 2.4E-08 62.3 9.4 94 134-253 61-156 (161)
303 COG5019 CDC3 Septin family pro 97.3 0.00023 4.9E-09 75.6 4.8 60 261-320 22-95 (373)
304 cd01874 Cdc42 Cdc42 subfamily. 97.3 0.00036 7.9E-09 67.0 5.7 73 263-340 2-79 (175)
305 cd04154 Arl2 Arl2 subfamily. 97.3 0.00076 1.7E-08 64.1 7.7 55 137-191 73-130 (173)
306 cd04149 Arf6 Arf6 subfamily. 97.3 0.0006 1.3E-08 64.9 7.0 91 139-252 70-167 (168)
307 cd00878 Arf_Arl Arf (ADP-ribos 97.3 0.00073 1.6E-08 62.8 7.4 57 136-192 57-116 (158)
308 PRK00049 elongation factor Tu; 97.3 0.0026 5.6E-08 69.5 12.8 59 133-193 86-145 (396)
309 cd04165 GTPBP1_like GTPBP1-lik 97.3 0.00027 5.9E-09 71.2 4.8 21 264-284 1-21 (224)
310 PRK12740 elongation factor G; 97.3 0.00044 9.6E-09 80.4 7.2 113 268-383 1-141 (668)
311 smart00178 SAR Sar1p-like memb 97.3 0.00064 1.4E-08 65.7 7.1 100 138-252 77-182 (184)
312 PTZ00132 GTP-binding nuclear p 97.3 0.00054 1.2E-08 67.8 6.5 58 261-318 8-69 (215)
313 TIGR00475 selB selenocysteine- 97.2 0.0021 4.5E-08 73.7 11.8 60 133-194 61-121 (581)
314 cd01897 NOG NOG1 is a nucleola 97.2 0.0017 3.7E-08 60.9 9.2 83 145-252 79-165 (168)
315 cd01871 Rac1_like Rac1-like su 97.2 0.0005 1.1E-08 65.9 5.5 54 263-318 2-60 (174)
316 cd01887 IF2_eIF5B IF2/eIF5B (i 97.2 0.0031 6.6E-08 58.9 10.7 50 140-191 68-117 (168)
317 PRK04213 GTP-binding protein; 97.2 0.0025 5.4E-08 62.1 10.4 92 142-254 87-191 (201)
318 cd00154 Rab Rab family. Rab G 97.2 0.0016 3.5E-08 59.4 8.4 57 133-189 60-118 (159)
319 cd04114 Rab30 Rab30 subfamily. 97.2 0.0015 3.2E-08 61.4 8.4 97 133-252 67-166 (169)
320 KOG2655 Septin family protein 97.2 0.00038 8.3E-09 74.3 4.7 59 262-320 21-92 (366)
321 cd04151 Arl1 Arl1 subfamily. 97.2 0.0013 2.9E-08 61.3 7.9 97 135-251 56-156 (158)
322 cd01864 Rab19 Rab19 subfamily. 97.2 0.0016 3.5E-08 61.1 8.5 58 134-191 64-123 (165)
323 PF00071 Ras: Ras family; Int 97.2 0.0007 1.5E-08 63.1 6.0 72 264-338 1-76 (162)
324 TIGR03598 GTPase_YsxC ribosome 97.2 0.0026 5.7E-08 61.0 10.1 57 145-203 100-160 (179)
325 cd04128 Spg1 Spg1p. Spg1p (se 97.2 0.0013 2.8E-08 63.8 7.9 96 135-254 62-165 (182)
326 PRK12297 obgE GTPase CgtA; Rev 97.2 0.0014 3E-08 72.1 9.0 93 135-255 226-327 (424)
327 PRK12736 elongation factor Tu; 97.1 0.0046 9.9E-08 67.5 12.7 58 133-192 86-144 (394)
328 cd04112 Rab26 Rab26 subfamily. 97.1 0.0016 3.5E-08 63.2 8.2 101 133-256 61-164 (191)
329 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.1 0.0018 3.8E-08 62.5 8.2 52 139-190 69-123 (183)
330 cd01876 YihA_EngB The YihA (En 97.1 0.0046 9.9E-08 57.0 10.6 90 140-253 76-169 (170)
331 PF02421 FeoB_N: Ferrous iron 97.1 0.00025 5.5E-09 67.6 2.1 65 143-211 76-142 (156)
332 cd04128 Spg1 Spg1p. Spg1p (se 97.1 0.00098 2.1E-08 64.6 6.3 77 263-342 1-81 (182)
333 cd04101 RabL4 RabL4 (Rab-like4 97.1 0.0019 4.1E-08 60.3 8.1 56 135-192 65-123 (164)
334 cd04159 Arl10_like Arl10-like 97.1 0.0017 3.8E-08 59.2 7.5 68 134-201 56-126 (159)
335 PF00025 Arf: ADP-ribosylation 97.0 0.00065 1.4E-08 65.4 4.4 80 260-344 12-92 (175)
336 cd04129 Rho2 Rho2 subfamily. 97.0 0.0011 2.5E-08 64.1 6.1 56 263-319 2-61 (187)
337 cd04150 Arf1_5_like Arf1-Arf5- 97.0 0.0021 4.6E-08 60.5 7.8 57 135-191 57-116 (159)
338 smart00175 RAB Rab subfamily o 97.0 0.0024 5.2E-08 59.3 8.0 56 133-190 60-119 (164)
339 cd04166 CysN_ATPS CysN_ATPS su 97.0 0.0042 9.1E-08 61.5 10.0 57 133-190 88-144 (208)
340 cd04131 Rnd Rnd subfamily. Th 97.0 0.0014 3E-08 63.4 6.3 54 263-318 2-60 (178)
341 PRK05291 trmE tRNA modificatio 97.0 0.002 4.4E-08 71.5 8.4 84 137-254 286-369 (449)
342 cd01866 Rab2 Rab2 subfamily. 97.0 0.0031 6.7E-08 59.6 8.4 56 134-191 65-124 (168)
343 KOG0448 Mitofusin 1 GTPase, in 97.0 0.0029 6.2E-08 71.8 9.3 121 261-381 108-287 (749)
344 cd04158 ARD1 ARD1 subfamily. 97.0 0.0019 4.1E-08 61.3 6.9 94 138-253 59-159 (169)
345 smart00177 ARF ARF-like small 97.0 0.0021 4.6E-08 61.6 7.2 56 135-190 70-128 (175)
346 cd04109 Rab28 Rab28 subfamily. 97.0 0.002 4.3E-08 64.0 7.3 97 135-254 63-165 (215)
347 cd04121 Rab40 Rab40 subfamily. 96.9 0.0017 3.8E-08 63.5 6.7 79 261-342 5-87 (189)
348 PTZ00099 rab6; Provisional 96.9 0.0024 5.2E-08 61.8 7.6 94 135-255 42-142 (176)
349 KOG1423 Ras-like GTPase ERA [C 96.9 0.0029 6.4E-08 65.8 8.3 125 129-259 139-275 (379)
350 PRK12735 elongation factor Tu; 96.9 0.0064 1.4E-07 66.4 11.6 59 133-193 86-145 (396)
351 cd04120 Rab12 Rab12 subfamily. 96.9 0.0014 3E-08 65.0 5.8 77 263-342 1-81 (202)
352 cd04119 RJL RJL (RabJ-Like) su 96.9 0.0048 1E-07 57.3 9.1 56 135-190 62-124 (168)
353 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.9 0.0032 7E-08 60.1 7.9 56 135-190 72-130 (174)
354 cd04142 RRP22 RRP22 subfamily. 96.9 0.0026 5.6E-08 62.6 7.3 57 135-191 70-131 (198)
355 cd00879 Sar1 Sar1 subfamily. 96.9 0.003 6.5E-08 60.8 7.6 107 135-253 76-189 (190)
356 PLN00023 GTP-binding protein; 96.9 0.0029 6.3E-08 67.1 8.0 79 261-342 20-115 (334)
357 TIGR03680 eif2g_arch translati 96.9 0.00086 1.9E-08 73.4 4.2 25 261-285 3-27 (406)
358 smart00174 RHO Rho (Ras homolo 96.9 0.0019 4.1E-08 61.0 6.0 51 141-191 65-117 (174)
359 PRK11058 GTPase HflX; Provisio 96.9 0.0053 1.1E-07 67.8 10.2 90 140-255 271-362 (426)
360 TIGR00750 lao LAO/AO transport 96.8 0.0028 6E-08 66.6 7.6 24 261-284 33-56 (300)
361 PRK05433 GTP-binding protein L 96.8 0.0052 1.1E-07 70.7 10.3 124 134-283 86-217 (600)
362 cd00882 Ras_like_GTPase Ras-li 96.8 0.004 8.7E-08 55.2 7.5 58 140-197 63-123 (157)
363 cd04102 RabL3 RabL3 (Rab-like3 96.8 0.002 4.4E-08 63.9 6.0 57 263-319 1-66 (202)
364 cd01874 Cdc42 Cdc42 subfamily. 96.8 0.002 4.3E-08 61.9 5.7 52 141-192 68-121 (175)
365 cd01883 EF1_alpha Eukaryotic e 96.8 0.0054 1.2E-07 61.3 9.0 57 133-190 88-151 (219)
366 PRK05506 bifunctional sulfate 96.8 0.0071 1.5E-07 70.0 11.0 57 133-190 115-171 (632)
367 cd00157 Rho Rho (Ras homology) 96.8 0.0027 5.9E-08 59.5 6.2 56 142-197 68-125 (171)
368 COG0218 Predicted GTPase [Gene 96.8 0.012 2.7E-07 58.0 10.8 101 132-255 90-197 (200)
369 PLN03126 Elongation factor Tu; 96.8 0.008 1.7E-07 67.3 10.8 59 132-192 154-213 (478)
370 cd01882 BMS1 Bms1. Bms1 is an 96.7 0.0044 9.6E-08 62.4 7.8 65 137-203 95-161 (225)
371 TIGR01393 lepA GTP-binding pro 96.7 0.0088 1.9E-07 68.7 11.2 97 134-256 82-181 (595)
372 TIGR00483 EF-1_alpha translati 96.7 0.009 2E-07 65.8 10.8 58 133-190 96-155 (426)
373 cd04106 Rab23_lke Rab23-like s 96.7 0.005 1.1E-07 57.2 7.6 56 134-191 63-121 (162)
374 cd01871 Rac1_like Rac1-like su 96.7 0.0045 9.7E-08 59.4 7.4 51 140-190 67-119 (174)
375 cd04107 Rab32_Rab38 Rab38/Rab3 96.7 0.0038 8.1E-08 61.1 7.0 52 138-189 66-123 (201)
376 PRK12317 elongation factor 1-a 96.7 0.0049 1.1E-07 67.8 8.6 57 133-190 95-153 (425)
377 cd04145 M_R_Ras_like M-Ras/R-R 96.7 0.0048 1.1E-07 57.3 7.4 57 135-191 63-122 (164)
378 cd01886 EF-G Elongation factor 96.7 0.0041 8.9E-08 64.5 7.5 68 134-204 76-143 (270)
379 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 96.7 0.003 6.6E-08 63.6 6.3 76 263-342 2-81 (222)
380 cd04118 Rab24 Rab24 subfamily. 96.7 0.0048 1E-07 59.6 7.5 52 140-191 68-120 (193)
381 cd01875 RhoG RhoG subfamily. 96.7 0.0034 7.4E-08 61.1 6.4 57 262-319 3-63 (191)
382 cd04110 Rab35 Rab35 subfamily. 96.7 0.0052 1.1E-07 60.1 7.7 95 135-253 68-165 (199)
383 cd04133 Rop_like Rop subfamily 96.7 0.0033 7.1E-08 60.8 6.1 57 263-320 2-62 (176)
384 TIGR00485 EF-Tu translation el 96.7 0.018 3.9E-07 62.9 12.4 58 133-192 86-144 (394)
385 cd04132 Rho4_like Rho4-like su 96.6 0.0062 1.3E-07 58.4 7.9 52 139-190 66-119 (187)
386 CHL00189 infB translation init 96.6 0.012 2.5E-07 69.0 11.4 98 133-254 306-409 (742)
387 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.6 0.0038 8.2E-08 60.7 6.3 57 261-318 4-64 (182)
388 cd04127 Rab27A Rab27a subfamil 96.6 0.01 2.2E-07 56.4 9.2 93 133-252 74-174 (180)
389 cd01868 Rab11_like Rab11-like. 96.6 0.0072 1.6E-07 56.5 8.0 55 135-191 65-123 (165)
390 PRK05124 cysN sulfate adenylyl 96.6 0.011 2.3E-07 66.3 10.6 57 133-190 118-174 (474)
391 cd04138 H_N_K_Ras_like H-Ras/N 96.6 0.0062 1.3E-07 56.2 7.4 56 137-192 64-122 (162)
392 cd04123 Rab21 Rab21 subfamily. 96.6 0.0075 1.6E-07 55.6 7.9 57 135-191 62-120 (162)
393 cd01860 Rab5_related Rab5-rela 96.6 0.012 2.5E-07 54.8 9.3 56 135-190 63-120 (163)
394 cd01892 Miro2 Miro2 subfamily. 96.6 0.0023 5.1E-08 60.9 4.6 50 141-192 73-124 (169)
395 cd01867 Rab8_Rab10_Rab13_like 96.6 0.0087 1.9E-07 56.4 8.4 55 134-190 64-122 (167)
396 cd01885 EF2 EF2 (for archaea a 96.6 0.0074 1.6E-07 60.8 8.2 54 134-189 85-138 (222)
397 TIGR01394 TypA_BipA GTP-bindin 96.6 0.012 2.6E-07 67.6 10.8 68 133-202 75-145 (594)
398 cd04122 Rab14 Rab14 subfamily. 96.6 0.0068 1.5E-07 57.0 7.3 56 134-191 63-122 (166)
399 cd04176 Rap2 Rap2 subgroup. T 96.5 0.0051 1.1E-07 57.4 6.3 53 139-191 66-121 (163)
400 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.5 0.0063 1.4E-07 57.1 6.8 56 134-191 63-122 (166)
401 PLN00223 ADP-ribosylation fact 96.5 0.0076 1.7E-07 58.3 7.6 57 135-191 74-133 (181)
402 TIGR02034 CysN sulfate adenyly 96.5 0.017 3.6E-07 63.4 11.1 58 132-190 90-147 (406)
403 cd04140 ARHI_like ARHI subfami 96.5 0.0079 1.7E-07 56.6 7.5 50 141-190 68-122 (165)
404 KOG3859 Septins (P-loop GTPase 96.5 0.0034 7.4E-08 64.4 5.1 80 239-320 21-108 (406)
405 cd04139 RalA_RalB RalA/RalB su 96.5 0.011 2.3E-07 54.8 8.1 57 134-190 60-119 (164)
406 PTZ00327 eukaryotic translatio 96.5 0.001 2.2E-08 73.9 1.2 26 261-286 33-58 (460)
407 cd04116 Rab9 Rab9 subfamily. 96.5 0.012 2.7E-07 55.2 8.5 57 135-191 67-129 (170)
408 cd00876 Ras Ras family. The R 96.5 0.012 2.5E-07 54.2 8.1 56 135-190 60-118 (160)
409 PRK10218 GTP-binding protein; 96.4 0.019 4.1E-07 66.1 11.3 67 134-202 80-149 (607)
410 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.4 0.006 1.3E-07 61.9 6.3 75 262-340 13-91 (232)
411 PLN03110 Rab GTPase; Provision 96.4 0.0071 1.5E-07 60.2 6.8 57 133-191 72-132 (216)
412 cd04161 Arl2l1_Arl13_like Arl2 96.4 0.0088 1.9E-07 56.7 7.1 67 135-201 56-125 (167)
413 cd04103 Centaurin_gamma Centau 96.4 0.006 1.3E-07 57.7 5.9 54 263-318 1-58 (158)
414 cd01865 Rab3 Rab3 subfamily. 96.4 0.012 2.6E-07 55.3 7.9 55 135-191 63-121 (165)
415 PF09439 SRPRB: Signal recogni 96.4 0.0029 6.2E-08 61.8 3.7 101 263-369 4-126 (181)
416 cd04167 Snu114p Snu114p subfam 96.4 0.011 2.3E-07 58.8 7.8 53 135-189 84-136 (213)
417 cd04113 Rab4 Rab4 subfamily. 96.4 0.013 2.9E-07 54.5 8.1 58 134-191 61-120 (161)
418 cd04162 Arl9_Arfrp2_like Arl9/ 96.4 0.0082 1.8E-07 56.8 6.6 55 139-194 61-117 (164)
419 smart00053 DYNc Dynamin, GTPas 96.3 0.023 5E-07 58.0 10.1 69 132-204 148-218 (240)
420 cd04147 Ras_dva Ras-dva subfam 96.3 0.015 3.2E-07 56.8 8.4 52 140-191 65-119 (198)
421 cd04136 Rap_like Rap-like subf 96.3 0.012 2.6E-07 54.6 7.4 52 140-191 67-121 (163)
422 KOG1954 Endocytosis/signaling 96.3 0.023 4.9E-07 60.7 10.0 26 261-286 57-82 (532)
423 cd04108 Rab36_Rab34 Rab34/Rab3 96.3 0.016 3.4E-07 55.3 8.2 59 134-192 61-122 (170)
424 cd04144 Ras2 Ras2 subfamily. 96.3 0.02 4.4E-07 55.4 9.1 56 135-190 60-120 (190)
425 PRK12739 elongation factor G; 96.3 0.009 2E-07 69.9 7.8 68 135-205 86-153 (691)
426 TIGR00491 aIF-2 translation in 96.3 0.016 3.4E-07 66.5 9.4 55 134-190 81-135 (590)
427 COG0480 FusA Translation elong 96.3 0.0084 1.8E-07 69.7 7.3 106 261-369 9-142 (697)
428 PTZ00133 ADP-ribosylation fact 96.3 0.012 2.6E-07 56.8 7.3 54 137-190 76-132 (182)
429 cd04126 Rab20 Rab20 subfamily. 96.3 0.017 3.6E-07 58.1 8.5 51 140-190 62-114 (220)
430 smart00173 RAS Ras subfamily o 96.2 0.014 3E-07 54.4 7.3 53 139-191 65-120 (164)
431 TIGR00231 small_GTP small GTP- 96.2 0.0041 9E-08 56.1 3.7 53 176-251 108-160 (161)
432 cd04120 Rab12 Rab12 subfamily. 96.2 0.014 3E-07 57.8 7.7 56 135-190 62-119 (202)
433 PRK09435 membrane ATPase/prote 96.2 0.0086 1.9E-07 63.9 6.6 23 261-283 55-77 (332)
434 cd04143 Rhes_like Rhes_like su 96.2 0.027 5.8E-07 57.6 10.0 90 142-254 68-170 (247)
435 cd04125 RabA_like RabA-like su 96.2 0.017 3.8E-07 55.6 8.0 55 134-190 61-119 (188)
436 cd04135 Tc10 TC10 subfamily. 96.2 0.0087 1.9E-07 56.5 5.8 51 142-192 68-120 (174)
437 COG0536 Obg Predicted GTPase [ 96.2 0.03 6.5E-07 59.4 10.0 95 138-255 230-333 (369)
438 cd01863 Rab18 Rab18 subfamily. 96.2 0.019 4.1E-07 53.3 7.8 56 134-191 61-121 (161)
439 cd04148 RGK RGK subfamily. Th 96.2 0.011 2.4E-07 59.2 6.6 88 145-255 72-163 (221)
440 cd01870 RhoA_like RhoA-like su 96.1 0.016 3.5E-07 54.7 7.3 53 141-193 68-122 (175)
441 smart00176 RAN Ran (Ras-relate 96.1 0.007 1.5E-07 59.9 5.0 72 268-342 1-76 (200)
442 PF04670 Gtr1_RagA: Gtr1/RagA 96.1 0.0065 1.4E-07 61.7 4.8 81 264-344 1-87 (232)
443 PRK04000 translation initiatio 96.1 0.0051 1.1E-07 67.6 4.2 26 260-285 7-32 (411)
444 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.1 0.026 5.7E-07 53.9 8.7 52 139-190 67-121 (172)
445 cd04130 Wrch_1 Wrch-1 subfamil 96.1 0.01 2.2E-07 56.4 5.7 52 141-192 67-120 (173)
446 cd01896 DRG The developmentall 96.1 0.032 6.9E-07 56.5 9.6 26 134-159 66-91 (233)
447 PRK00007 elongation factor G; 96.1 0.016 3.5E-07 67.9 8.4 70 135-207 88-157 (693)
448 cd01875 RhoG RhoG subfamily. 96.1 0.017 3.8E-07 56.1 7.4 50 141-190 70-121 (191)
449 cd04168 TetM_like Tet(M)-like 96.1 0.017 3.6E-07 58.7 7.5 54 135-190 77-130 (237)
450 cd04155 Arl3 Arl3 subfamily. 96.1 0.011 2.3E-07 55.8 5.7 66 134-199 70-138 (173)
451 cd04121 Rab40 Rab40 subfamily. 96.1 0.02 4.4E-07 56.0 7.9 91 135-252 68-164 (189)
452 cd04111 Rab39 Rab39 subfamily. 96.1 0.016 3.6E-07 57.4 7.3 98 135-255 65-166 (211)
453 PLN03118 Rab family protein; P 96.0 0.027 5.9E-07 55.6 8.5 97 135-254 75-176 (211)
454 cd00877 Ran Ran (Ras-related n 96.0 0.017 3.7E-07 54.7 6.8 51 142-192 69-120 (166)
455 cd04146 RERG_RasL11_like RERG/ 96.0 0.02 4.3E-07 53.7 7.1 53 138-190 64-120 (165)
456 cd04175 Rap1 Rap1 subgroup. T 96.0 0.017 3.8E-07 53.9 6.8 53 139-191 66-121 (164)
457 PLN00043 elongation factor 1-a 96.0 0.01 2.3E-07 65.9 6.0 24 260-283 5-28 (447)
458 KOG1249 Predicted GTPases [Gen 96.0 0.0045 9.7E-08 68.6 3.0 82 235-321 287-375 (572)
459 PLN03108 Rab family protein; P 95.9 0.023 4.9E-07 56.3 7.6 57 135-191 68-126 (210)
460 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 95.9 0.027 5.8E-07 57.2 8.2 51 139-189 78-130 (232)
461 KOG0462 Elongation factor-type 95.9 0.013 2.7E-07 65.3 6.1 118 264-384 62-207 (650)
462 PRK05306 infB translation init 95.9 0.029 6.3E-07 66.3 9.6 55 134-190 349-403 (787)
463 cd04134 Rho3 Rho3 subfamily. 95.9 0.021 4.6E-07 55.3 7.1 51 142-192 68-120 (189)
464 TIGR00487 IF-2 translation ini 95.9 0.036 7.7E-07 63.7 9.8 55 134-190 147-201 (587)
465 KOG1489 Predicted GTP-binding 95.9 0.052 1.1E-06 57.1 9.9 54 135-189 264-325 (366)
466 PRK14845 translation initiatio 95.8 0.036 7.9E-07 67.1 10.0 57 134-192 538-594 (1049)
467 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 95.8 0.026 5.5E-07 54.9 7.3 51 140-190 71-123 (182)
468 TIGR00450 mnmE_trmE_thdF tRNA 95.8 0.046 1E-06 60.7 10.2 51 138-191 275-325 (442)
469 cd04129 Rho2 Rho2 subfamily. 95.8 0.014 3.1E-07 56.3 5.4 49 142-190 69-119 (187)
470 cd01873 RhoBTB RhoBTB subfamil 95.8 0.025 5.3E-07 55.7 7.0 49 142-190 84-134 (195)
471 cd04131 Rnd Rnd subfamily. Th 95.8 0.023 5E-07 54.9 6.6 51 140-190 67-119 (178)
472 PRK09554 feoB ferrous iron tra 95.7 0.021 4.5E-07 67.6 7.4 67 143-213 83-151 (772)
473 cd04170 EF-G_bact Elongation f 95.7 0.034 7.4E-07 57.2 8.0 69 134-205 76-144 (268)
474 cd04103 Centaurin_gamma Centau 95.6 0.025 5.4E-07 53.4 6.2 86 143-251 63-155 (158)
475 smart00176 RAN Ran (Ras-relate 95.6 0.035 7.6E-07 54.9 7.4 57 135-191 57-114 (200)
476 PRK04004 translation initiatio 95.6 0.079 1.7E-06 60.9 11.1 55 134-190 83-137 (586)
477 cd03112 CobW_like The function 95.6 0.008 1.7E-07 57.2 2.5 22 264-285 2-23 (158)
478 PRK09435 membrane ATPase/prote 95.5 0.031 6.8E-07 59.7 7.2 95 142-255 166-260 (332)
479 TIGR00437 feoB ferrous iron tr 95.5 0.022 4.8E-07 65.4 6.4 81 144-253 71-153 (591)
480 TIGR01425 SRP54_euk signal rec 95.5 0.013 2.9E-07 64.5 4.2 32 261-292 99-136 (429)
481 TIGR00484 EF-G translation elo 95.5 0.033 7.1E-07 65.2 7.7 55 135-191 88-142 (689)
482 PLN03071 GTP-binding nuclear p 95.5 0.032 6.9E-07 55.8 6.6 51 141-191 81-132 (219)
483 PTZ00369 Ras-like protein; Pro 95.5 0.042 9.1E-07 53.2 7.3 53 139-191 70-125 (189)
484 PTZ00141 elongation factor 1- 95.4 0.13 2.8E-06 57.2 11.9 55 132-188 95-157 (446)
485 KOG0073 GTP-binding ADP-ribosy 95.4 0.028 6E-07 53.8 5.6 57 261-318 15-71 (185)
486 cd04169 RF3 RF3 subfamily. Pe 95.4 0.047 1E-06 56.5 7.7 57 134-192 83-139 (267)
487 TIGR03263 guanyl_kin guanylate 95.4 0.0074 1.6E-07 57.9 1.6 53 264-316 3-56 (180)
488 cd04133 Rop_like Rop subfamily 95.4 0.029 6.3E-07 54.2 5.8 51 140-190 67-119 (176)
489 KOG1191 Mitochondrial GTPase [ 95.4 0.028 6.2E-07 61.9 6.2 58 134-191 337-404 (531)
490 cd03114 ArgK-like The function 95.4 0.02 4.4E-07 53.9 4.6 20 265-284 2-21 (148)
491 PRK12727 flagellar biosynthesi 95.3 0.049 1.1E-06 61.4 8.2 26 259-284 347-372 (559)
492 KOG0074 GTP-binding ADP-ribosy 95.3 0.042 9E-07 51.4 6.3 60 260-319 15-74 (185)
493 cd04117 Rab15 Rab15 subfamily. 95.3 0.065 1.4E-06 50.3 8.0 55 135-191 62-120 (161)
494 COG0532 InfB Translation initi 95.3 0.026 5.6E-07 62.9 5.9 107 261-369 4-121 (509)
495 PRK14721 flhF flagellar biosyn 95.3 0.019 4.2E-07 63.1 4.8 26 260-285 189-214 (420)
496 KOG1145 Mitochondrial translat 95.2 0.023 4.9E-07 63.4 5.0 109 261-378 152-277 (683)
497 COG0481 LepA Membrane GTPase L 95.2 0.014 3E-07 64.1 3.1 149 265-418 12-190 (603)
498 PF06858 NOG1: Nucleolar GTP-b 95.2 0.046 1E-06 43.4 5.2 43 145-187 13-58 (58)
499 PRK14737 gmk guanylate kinase; 95.1 0.014 3E-07 57.2 2.6 43 262-304 4-46 (186)
500 cd04105 SR_beta Signal recogni 95.1 0.044 9.5E-07 54.2 6.1 70 135-205 61-138 (203)
No 1
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=2.7e-92 Score=730.58 Aligned_cols=421 Identities=53% Similarity=0.784 Sum_probs=365.3
Q ss_pred CCCCCCCCCCCCcchhhhhhhHHHHHHhhhhhhHHHhhccccCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 007611 1 MVKKSKKSKSKRVPLRKKYKIIKKVKEHHKKKAKEAKKLNLSGKRKVEKDPGIPNDWPFKEQELKALEARRARALKELEQ 80 (596)
Q Consensus 1 M~k~~~k~~SKR~~~~~r~ki~kKv~eh~rK~rk~akk~~~~~~~k~~KdpgiPn~~pfKe~il~~~e~~r~~~~e~~~~ 80 (596)
|.+..+|++|||+||++||||+|||++||||.||.|||++++ +++.+|||||||+||||++||.|+|.+|++.++++++
T Consensus 1 ~~~~~~kk~skR~s~~~~~kiekk~~~h~~k~~k~akk~~~~-~s~~~kdp~ipns~p~k~~il~eve~~k~~~~e~re~ 79 (435)
T KOG2484|consen 1 HNMRWRKKQSKRLSTLLRSKIEKKAREHHRKVRKYAKKNGAK-KSRPRKDPGIPNSVPFKEQILPEVESKKMRIEEEREA 79 (435)
T ss_pred CchhHHHHHHhhhhhcccccccchHHHhhhHhhhHhhhCccc-ccccccCCCCCCCCCChHHHHHHhcchhhhHHHHHHH
Confidence 455667899999999999999999999999999999999975 6688999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHhccccccc-cCCC------cccCCCCCccchHHHHHHHHHHhhhcCeEEEEE
Q 007611 81 KKAARKERAQKRKLGLLEDDDVSMLADAANGKEENF-GEGT------STASGKNRDNSDRAFYKELVKVIEVSDVILEVL 153 (596)
Q Consensus 81 ~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~kel~kvie~sDVIleVl 153 (596)
+++++++.+.+++...+. .+...+..+...+ +.+. ........+.+.++|+++|++||+.||||||||
T Consensus 80 rk~ark~e~~~~k~~~le-----~~~~~~~~~~~~~~e~e~~~~~e~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVl 154 (435)
T KOG2484|consen 80 RKAARKEEAIERKKNGLE-----ANVDDKDERIEPSPEEEEMLYAEEEYENALDNEESKKAYDKEFRKVVEASDVVLEVL 154 (435)
T ss_pred HHHHHHHHHHHhhhhhhh-----hhhhHHHHhcCCCcchHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhhheEEEee
Confidence 888888776655532111 1111111111111 1110 011122345889999999999999999999999
Q ss_pred eCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHhhhcCcCcccCCCCCc
Q 007611 154 DARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSN 233 (596)
Q Consensus 154 DARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~~~~~~~~~~~~~~~ 233 (596)
|||||+||||+++|++|.++.++|++||||||+||||+++++.|+.||++++||++|+++++.+..|. .
T Consensus 155 DARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~~-----------~ 223 (435)
T KOG2484|consen 155 DARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSNS-----------K 223 (435)
T ss_pred eccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccccccccc-----------c
Confidence 99999999999999999988788999999999999999999999999999999999999999876653 3
Q ss_pred ccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEe
Q 007611 234 ILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLD 313 (596)
Q Consensus 234 ~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiD 313 (596)
.++++.|+|++.|+.+|.||++.+.++++++|||||+|||||||+||+|.++++|.||+.||+|+.+|++.+|.+|.|+|
T Consensus 224 ~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llD 303 (435)
T KOG2484|consen 224 NLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLD 303 (435)
T ss_pred ccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceecc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCChHHHHHhhccccccccCCCchhHHHHHhhCCcchhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccH
Q 007611 314 CPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDV 393 (596)
Q Consensus 314 TPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~v~~iL~~~~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di 393 (596)
+|||+++...+.. .++|++|+++..+.||+.++..||.+|.++.++.+|.++.|..+++||..+|+.+|++.+||++|+
T Consensus 304 sPgiv~~~~~~~~-~~~Lrn~~~i~~~~dp~~~v~~iL~~~~~e~~~~~Y~~~~~~~~~~Fl~~~ar~~G~~~kGG~pd~ 382 (435)
T KOG2484|consen 304 SPGIVPPSIDEKD-ALALRNCIPIGKVADPVTPVSCILKRCSKESRSVLYNIPSIRATDDFLEKFARRRGLLLKGGIPDV 382 (435)
T ss_pred CCceeecCCCccc-hhhhhcccccccccCccchHHHHHHHhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhhcCCCCcH
Confidence 9999998655444 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcccCCCCCCCC-----CCchhhhhHhhhccCccc
Q 007611 394 EAAARIILHDWNEGKIPYYTMPPARDQG-----IPSEARIVSELGKEFNVN 439 (596)
Q Consensus 394 ~aaa~~~L~d~~~Gki~~~~~pp~~~~~-----~~~~~~iv~~~~~~f~~~ 439 (596)
.+||..+|+||+.|+|+||++||..... .....++|..|.++|++.
T Consensus 383 ~~AA~~vl~Dw~~Gki~y~~~pp~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 433 (435)
T KOG2484|consen 383 NAAAFAVLNDWRTGKIGYYTLPPTSEINDIEEIESNETQIVEELAKEFDLN 433 (435)
T ss_pred HHHHHHHHHhhccCceeeeeCCChhhhhhhhhHhhhhhHHHHHHhhhcccc
Confidence 9999999999999999999999863211 123356777777777664
No 2
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=3e-58 Score=473.64 Aligned_cols=304 Identities=39% Similarity=0.713 Sum_probs=273.7
Q ss_pred HHhcCCCCcccHHHHHHHhccccccccCCCc-------------ccCCCCCccchHHHHHHHHHHhhhcCeEEEEEeCCC
Q 007611 91 KRKLGLLEDDDVSMLADAANGKEENFGEGTS-------------TASGKNRDNSDRAFYKELVKVIEVSDVILEVLDARD 157 (596)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~kel~kvie~sDVIleVlDARd 157 (596)
.|+...+...+++.|...|..+...|++... +........+.+++|-+|.+||..|||||.||||||
T Consensus 146 qRKRp~L~~s~le~L~k~a~e~~~~yee~~~~~~~~e~~g~~~~~~~~if~kGQSkRIW~ELyKViDSSDVvvqVlDARD 225 (572)
T KOG2423|consen 146 QRKRPKLTASSLEELSKAAEESDDKYEEKKLGDLREEEDGVRKAARDAIFSKGQSKRIWGELYKVIDSSDVVVQVLDARD 225 (572)
T ss_pred hhcCcccchhhHHHHHHHhhhhhhhhhhhccccchhhcccchHHHHHHHHhccchhHHHHHHHHhhcccceeEEeeeccC
Confidence 3455555566788888777776666665421 111122346678899999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHhhhcCcCcccCCCCCccccc
Q 007611 158 PLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQT 237 (596)
Q Consensus 158 Pl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~ 237 (596)
|+||||..+|++++...++|++|+|||||||||-++..+|+..|.++|||++|+++.
T Consensus 226 PmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi----------------------- 282 (572)
T KOG2423|consen 226 PMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASI----------------------- 282 (572)
T ss_pred CcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhh-----------------------
Confidence 999999999999999889999999999999999999999999999999999999753
Q ss_pred ccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCC
Q 007611 238 SDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGV 317 (596)
Q Consensus 238 s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI 317 (596)
...+|...|+++|++|++.+..+..|.||+||||||||||+||+|...++|.|++.||-|+.+|.+.+-..|.|||||||
T Consensus 283 ~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 283 NNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGV 362 (572)
T ss_pred cCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCc
Confidence 23578889999999999988788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHhhccccccccCCCchhHHHHHhhCCcchhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccHHHHH
Q 007611 318 VMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAA 397 (596)
Q Consensus 318 ~~~~~~~~~~~~~L~~~~~i~~l~D~~~~v~~iL~~~~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di~aaa 397 (596)
++|.. +.....+|+++.+++.+.+|..++..+|.||..+.|...|+|+.|.+..+||+.||...|+|.+||.||+...+
T Consensus 363 Vyps~-dset~ivLkGvVRVenv~~pe~yi~~vl~R~k~ehl~rtYkI~~w~d~~dfle~La~k~GkLlKGGEPd~~~vs 441 (572)
T KOG2423|consen 363 VYPSS-DSETDIVLKGVVRVENVKNPEDYIDGVLERCKPEHLSRTYKISGWNDSTDFLEKLAIKQGKLLKGGEPDLVVVS 441 (572)
T ss_pred cCCCC-CchHHHHhhceeeeeecCCHHHHHHHHHHhhhHHHHHhhhCCCccccHHHHHHHHHHHhCccccCCCCchhHHH
Confidence 99954 77788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcccCCCCC
Q 007611 398 RIILHDWNEGKIPYYTMPPAR 418 (596)
Q Consensus 398 ~~~L~d~~~Gki~~~~~pp~~ 418 (596)
+.+|+||..|+||||..||..
T Consensus 442 KmvLnDwqRGkiP~FVpPp~~ 462 (572)
T KOG2423|consen 442 KMVLNDWQRGKIPFFVPPPGL 462 (572)
T ss_pred HHHhhHhhcCCCceecCCCcc
Confidence 999999999999999888854
No 3
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=100.00 E-value=1.1e-45 Score=393.39 Aligned_cols=289 Identities=34% Similarity=0.515 Sum_probs=226.9
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEE
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAF 210 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~-ptv~f 210 (596)
.-.+|||||+|||.|||||+|+|||+|+..||+++++++....+.|..|||+||+||+|++.+..|..||+..+ +++.|
T Consensus 161 NLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~ 240 (562)
T KOG1424|consen 161 NLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFF 240 (562)
T ss_pred CHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEE
Confidence 44699999999999999999999999999999999999999888899999999999999999999999998876 55555
Q ss_pred EcchhHH---hhhcC--cCcccC-CCCCc-ccccc----------cccCHHH-----HHHHHHhhhhccccccceEEEee
Q 007611 211 KCSTQEQ---RANLG--WKSSKT-AKPSN-ILQTS----------DCLGAET-----LIKLLKNYSRSHEIKKSITVGVI 268 (596)
Q Consensus 211 ~~~~~~~---~~~~~--~~~~~~-~~~~~-~~s~s----------~~~G~~~-----Ll~lLk~y~~~~~~k~~i~V~vV 268 (596)
.|....+ .+.++ +..... ....+ +.... ++..... ++..+........-+..++||+|
T Consensus 241 SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~V 320 (562)
T KOG1424|consen 241 SALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFV 320 (562)
T ss_pred ecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEee
Confidence 5432000 00000 000000 00000 00000 0000111 11112221111112235999999
Q ss_pred cCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchhHH
Q 007611 269 GLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVK 348 (596)
Q Consensus 269 G~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~v~ 348 (596)
|||||||||+||+|.|.+.+.|+.+||.|++.|++.+...+.|+||||+++|.+.......+|.++..|+++.|+..++.
T Consensus 321 GYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~emvl~GiLPIDQmrd~~~~~~ 400 (562)
T KOG1424|consen 321 GYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEMVLNGILPIDQLRDHYGAVG 400 (562)
T ss_pred cCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHHHHHhcCccHHHhhcccchHH
Confidence 99999999999999999999999999999999999999999999999999998877788899999999999999999999
Q ss_pred HHHhhCCcchhhhhhCCCCC--------CCHHHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHcCCCCcccCCCCCCC
Q 007611 349 EILNRCPANLLISLYKLPSF--------DSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQ 420 (596)
Q Consensus 349 ~iL~~~~~~~L~~l~ki~~~--------~~~~e~L~~la~~~g~l~kggi~di~aaa~~~L~d~~~Gki~~~~~pp~~~~ 420 (596)
.+..+++...|..+|..+.. .+..++|..+|..+|++...+.+|..+||+.+|.|+.+|++.|+..||..++
T Consensus 401 llaerIP~~~Le~~Y~~k~~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL~~~~~PPg~~~ 480 (562)
T KOG1424|consen 401 LLAERIPRHVLERLYGHKPREDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKLLYCFPPPGYEP 480 (562)
T ss_pred HHHHhcCHHHHHHHhCCCcccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCeeeeeeCCCCCCc
Confidence 99999999999999963221 2567899999999999999888999999999999999999999999997553
No 4
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=2.2e-40 Score=343.42 Aligned_cols=254 Identities=32% Similarity=0.543 Sum_probs=208.7
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEc
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKC 212 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~-~ptv~f~~ 212 (596)
.-+++++++++.||+||+|+|||+|++++++.+++++. ++|+|+|+||+||++.+.+..|+.|+.+. .+++.+.
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vS- 87 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAIN- 87 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEE-
Confidence 35789999999999999999999999999999988773 69999999999999988788999999754 3444443
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccc--------cccceEEEeecCCCCCcchHHHhhhc
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE--------IKKSITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~--------~k~~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
+....|.+.|++.|..+.+... ....++|+|||+||||||||||+|++
T Consensus 88 ------------------------a~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~ 143 (287)
T PRK09563 88 ------------------------AKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG 143 (287)
T ss_pred ------------------------CCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhc
Confidence 2344567778877776654321 23568999999999999999999999
Q ss_pred cccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChH--HHHHhhcccccccc--CCCchhHHHHHhhCCcchhh
Q 007611 285 CHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEND--ASIALRNCKRIEKL--DDPVGPVKEILNRCPANLLI 360 (596)
Q Consensus 285 ~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~--~~~~L~~~~~i~~l--~D~~~~v~~iL~~~~~~~L~ 360 (596)
.+.+.|++.||+|++.+++.++.++.|+|||||.++...+.. ..+++.+|+....+ .++..++..+|.++....++
T Consensus 144 ~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~ 223 (287)
T PRK09563 144 KKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKHYPERLK 223 (287)
T ss_pred CCccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhhCHHHHH
Confidence 999999999999999999999999999999999998655433 45677777654322 12223445566677777889
Q ss_pred hhhCCCCC-CCHHHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHcCCCCcccCCC
Q 007611 361 SLYKLPSF-DSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 416 (596)
Q Consensus 361 ~l~ki~~~-~~~~e~L~~la~~~g~l~kggi~di~aaa~~~L~d~~~Gki~~~~~pp 416 (596)
..|+++.+ .+..+||..+|+++|++.+||.||+.+||+.+|++|+.|+++++++..
T Consensus 224 ~~y~~~~~~~~~~~~l~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld~ 280 (287)
T PRK09563 224 ERYKLDELPEDILELLEAIARKRGALRKGGEIDYERASELLLNEFRNGKLGKITLET 280 (287)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCcEEccC
Confidence 99999765 488999999999999999999999999999999999999999998764
No 5
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=4.3e-40 Score=339.49 Aligned_cols=253 Identities=33% Similarity=0.516 Sum_probs=209.8
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEEE
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAFK 211 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~-ptv~f~ 211 (596)
...+++++++++.||+||+|+|||+|++++++.+++++ .++|+|+|+||+||++++.+..|+.|+++.. +++.+.
T Consensus 9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAIN 84 (276)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 34678999999999999999999999999999998877 2689999999999999887889999997532 333332
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccc--------cccceEEEeecCCCCCcchHHHhhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE--------IKKSITVGVIGLPNVGKSSLINSLK 283 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~--------~k~~i~V~vVG~PNVGKSSLINsL~ 283 (596)
+....|.+.|++.|..+++... ....++|+|||+||||||||||+|+
T Consensus 85 -------------------------a~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~ 139 (276)
T TIGR03596 85 -------------------------AKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLA 139 (276)
T ss_pred -------------------------CCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHh
Confidence 2345677888888877665322 1346899999999999999999999
Q ss_pred ccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCCh--HHHHHhhccccccccC--CCchhHHHHHhhCCcchh
Q 007611 284 RCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEN--DASIALRNCKRIEKLD--DPVGPVKEILNRCPANLL 359 (596)
Q Consensus 284 ~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~--~~~~~L~~~~~i~~l~--D~~~~v~~iL~~~~~~~L 359 (596)
+.+.+.|++.||+|+..+++.++.++.|+||||++++...+. ...+++.+|.....+. ++...+..+|.++....+
T Consensus 140 ~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (276)
T TIGR03596 140 GKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPERL 219 (276)
T ss_pred CCCccccCCCCCeecceEEEEeCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhhCHHHH
Confidence 999999999999999999999988999999999999865443 4566777776554332 122345556777777888
Q ss_pred hhhhCCCCCC-CHHHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHcCCCCcccC
Q 007611 360 ISLYKLPSFD-SVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTM 414 (596)
Q Consensus 360 ~~l~ki~~~~-~~~e~L~~la~~~g~l~kggi~di~aaa~~~L~d~~~Gki~~~~~ 414 (596)
+..|+++.+. +..+||..+|+++|++.+||.||+.+||+.+|++|+.|+++++++
T Consensus 220 ~~~y~i~~~~~~~~~~l~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~l 275 (276)
T TIGR03596 220 KERYKLDELPEDIVELLEAIAKKRGCLLKGGELDLDRAAEILLNDFRKGKLGRITL 275 (276)
T ss_pred HHHhCcCCCCCCHHHHHHHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCceec
Confidence 9999998765 889999999999999999999999999999999999999999876
No 6
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.4e-40 Score=346.88 Aligned_cols=267 Identities=34% Similarity=0.558 Sum_probs=207.1
Q ss_pred ccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeE
Q 007611 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAV 208 (596)
Q Consensus 129 ~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv 208 (596)
......+|++++++++.+|+|++|+|||+|++|+++.+++++. +++.++||||+||+|+..+.+|.+||.+.+++.
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~ 93 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIK 93 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCc
Confidence 3445679999999999999999999999999999999999985 577799999999999999999999999987554
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHH-HHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcccc
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLI-KLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHV 287 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll-~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv 287 (596)
++..+...+.. ...+..+ ...+. +.++.+.+....+..++|+|||+||||||||||+|++++.
T Consensus 94 ~~~v~~~~~~~-----------~~~i~~~-----~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 94 PIFVSAKSRQG-----------GKKIRKA-----LEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred cEEEEeecccC-----------ccchHHH-----HHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccc
Confidence 44432211000 0001000 01111 4555555554456779999999999999999999999999
Q ss_pred ccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchhHHHHHhhCC-----cchhhhh
Q 007611 288 ANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCP-----ANLLISL 362 (596)
Q Consensus 288 ~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~v~~iL~~~~-----~~~L~~l 362 (596)
+.||+.||+|++.|++.++..+.|+|||||+++..... ...+..+.....+.|+..++..+..++. ...+-..
T Consensus 158 ~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~~~~--~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (322)
T COG1161 158 AKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKFDDD--ELVLLKLAPKGEIKDPVLPADEVAERLLGGLLIDEHYGEK 235 (322)
T ss_pred eeeCCCCceecceEEEEcCCCeEEecCCCcCCCCccch--HHHhhccccccccCccccChHHHHHHHHhhhhhhhhhhHh
Confidence 99999999999999999999999999999999976543 4455666666777888776655543322 1222223
Q ss_pred hCCCCC-------CCHHHHHHHHHHHhc-ccccCCcccHHHHHHHHHHHHHcCCCCcccCCCC
Q 007611 363 YKLPSF-------DSVDDFLQKVATVRG-KLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPA 417 (596)
Q Consensus 363 ~ki~~~-------~~~~e~L~~la~~~g-~l~kggi~di~aaa~~~L~d~~~Gki~~~~~pp~ 417 (596)
|.++.| .+.++++..++..+| .+.+||.+|+.+++..++.||..|++++|++++.
T Consensus 236 ~~~~~y~~~~~~~~~~~~~l~~~a~~rg~~l~~~g~~d~~~~~~~~~~d~~~gklg~~~~~~~ 298 (322)
T COG1161 236 LNITRYESNPIHRTDPEEFLELIAKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWFSLEEP 298 (322)
T ss_pred hCCcccccccccccCHHHHHHHHHHHhhhhhcCCCCccHHHHHHHHHHHHHhCCcceeecCCc
Confidence 333322 267889999999999 7888999999999999999999999999998874
No 7
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=100.00 E-value=1e-32 Score=265.66 Aligned_cols=171 Identities=70% Similarity=1.082 Sum_probs=142.1
Q ss_pred CeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHhhhcCcCcc
Q 007611 147 DVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSS 226 (596)
Q Consensus 147 DVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~~~~~~~~ 226 (596)
|+||+|+|||+|++++++.+++.+.....++|+|+|+||+||++++.+..|+.||++.++++.|.+..+.....+.+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 89999999999999999999998532224799999999999999999999999999999999998765533222211000
Q ss_pred c-CCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe
Q 007611 227 K-TAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL 305 (596)
Q Consensus 227 ~-~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l 305 (596)
. ......+.+.....|.+.|++.+++|.........++|+|||+||||||||||+|++.+.+.|++.||+|++.+++.+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~ 160 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL 160 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe
Confidence 0 011233566677889999999999988766666779999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC
Q 007611 306 DKNVKLLDCPGV 317 (596)
Q Consensus 306 ~~~i~LiDTPGI 317 (596)
+.++.|+|||||
T Consensus 161 ~~~~~l~DtPGi 172 (172)
T cd04178 161 DKKVKLLDSPGI 172 (172)
T ss_pred CCCEEEEECcCC
Confidence 999999999997
No 8
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=100.00 E-value=5.2e-32 Score=255.96 Aligned_cols=157 Identities=49% Similarity=0.839 Sum_probs=136.5
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ 217 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~ 217 (596)
++|.+++.+|+||+|+|+|+|+++++..+++.+.....++|+|+|+||+||++++.+..|+.++++.+++..|.
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~------ 74 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFH------ 74 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEE------
Confidence 58999999999999999999999999999999876544699999999999999998999999999888765443
Q ss_pred hhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCce
Q 007611 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT 297 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtT 297 (596)
.|+..+.|.+.|++.|..++........++|+++|.||||||||||+|.+...+.++++||+|
T Consensus 75 -----------------iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T 137 (157)
T cd01858 75 -----------------ASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET 137 (157)
T ss_pred -----------------eeccccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee
Confidence 334556788999999988765322224688999999999999999999999999999999999
Q ss_pred eeeEEEEeCCcEEEEecCCC
Q 007611 298 RSMQEVQLDKNVKLLDCPGV 317 (596)
Q Consensus 298 r~~q~v~l~~~i~LiDTPGI 317 (596)
++.+++.++.+++|+|||||
T Consensus 138 ~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 138 KVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred EeEEEEEcCCCEEEEECcCC
Confidence 99999999888999999997
No 9
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=5.2e-27 Score=218.21 Aligned_cols=140 Identities=41% Similarity=0.675 Sum_probs=120.2
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchh
Q 007611 136 YKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ 215 (596)
Q Consensus 136 ~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~ 215 (596)
|+++++.++.+|+||+|+|+|+|+++.+..+.+++.....++|+|+|+||+||++++.+..|..++......+.+.+
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iS--- 78 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFS--- 78 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEE---
Confidence 78999999999999999999999999998999988764357999999999999999888899999987643222211
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCC
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG 295 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pg 295 (596)
+.... .+++++|.||||||||||+|++...+.++..||
T Consensus 79 ---------------------a~~~~---------------------~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~ 116 (141)
T cd01857 79 ---------------------ALKEN---------------------ATIGLVGYPNVGKSSLINALVGKKKVSVSATPG 116 (141)
T ss_pred ---------------------ecCCC---------------------cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC
Confidence 11110 169999999999999999999999889999999
Q ss_pred ceeeeEEEEeCCcEEEEecCCCccC
Q 007611 296 LTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 296 tTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
+|++.+.+.++..+.|+|||||.+|
T Consensus 117 ~~~~~~~~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 117 KTKHFQTIFLTPTITLCDCPGLVFP 141 (141)
T ss_pred cccceEEEEeCCCEEEEECCCcCCC
Confidence 9999999999889999999999876
No 10
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.94 E-value=5.1e-26 Score=214.72 Aligned_cols=146 Identities=52% Similarity=0.824 Sum_probs=117.4
Q ss_pred CeEEEEEeCCCCCCCCcHHHH-HHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHhhhcCcCc
Q 007611 147 DVILEVLDARDPLGTRCIDME-KMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKS 225 (596)
Q Consensus 147 DVIleVlDARdPl~sr~~~le-~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~~~~~~~ 225 (596)
|+||+|+|+++|.++.+..++ ..+. ..++|+|+|+||+||++.+.+..|+.+++..++.-.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii--------------- 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIK--EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPF--------------- 63 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHh--cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEE---------------
Confidence 899999999999999998887 3443 2479999999999999998888999877765443222
Q ss_pred ccCCCCCcccccccccCHHHHHHHHHhhh--------hccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCce
Q 007611 226 SKTAKPSNILQTSDCLGAETLIKLLKNYS--------RSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT 297 (596)
Q Consensus 226 ~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~--------~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtT 297 (596)
++|+..+.|.+.|++.+.... .........+|+|+|+||||||||||+|++.+.+.+++.||||
T Consensus 64 --------~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t 135 (155)
T cd01849 64 --------KISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT 135 (155)
T ss_pred --------EEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc
Confidence 223345667788887764321 1111235688999999999999999999999988999999999
Q ss_pred eeeEEEEeCCcEEEEecCCC
Q 007611 298 RSMQEVQLDKNVKLLDCPGV 317 (596)
Q Consensus 298 r~~q~v~l~~~i~LiDTPGI 317 (596)
++.+++.++.++.|+|||||
T Consensus 136 ~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 136 TSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred cceEEEEecCCEEEEECCCC
Confidence 99999999989999999997
No 11
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.93 E-value=5.9e-25 Score=223.72 Aligned_cols=248 Identities=28% Similarity=0.395 Sum_probs=166.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcch
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCST 214 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~ 214 (596)
-.+.+.+.+..+|+||||.|||.|+++|+..+.+.+. .|+.||||||+||++..+....++||....-...++ +
T Consensus 36 alr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~--~ 109 (335)
T KOG2485|consen 36 ALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIK--L 109 (335)
T ss_pred HHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhhHHHHHHHhhcccchhh--h
Confidence 3578889999999999999999999999999988873 689999999999999888888888887662111111 0
Q ss_pred hHHhhhcCcCcccCCCCCcccccccccCHHHHHHH-------HHhhhhccccccceEEEeecCCCCCcchHHHhhhc---
Q 007611 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKL-------LKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKR--- 284 (596)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~l-------Lk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~--- 284 (596)
+.... ...++..++.. |..+.+. ......|.|||.||||||||||++.+
T Consensus 110 ~c~~~-------------------~~~~v~~l~~il~~~~~~l~r~irt--~~~~~~vmVvGvPNVGKSsLINa~r~~~L 168 (335)
T KOG2485|consen 110 DCNKD-------------------CNKQVSPLLKILTILSEELVRFIRT--LNSEYNVMVVGVPNVGKSSLINALRNVHL 168 (335)
T ss_pred hhhhh-------------------hhhccccHHHHHHHHHHHHHHhhcc--cCCceeEEEEcCCCCChHHHHHHHHHHHh
Confidence 00000 00011222222 2222221 33568999999999999999999974
Q ss_pred --cccccccCCCCceeeeEE-EEe--CCcEEEEecCCCccCCCCC--hHHHHHhhccccccccCCCchh---HHHHHhhC
Q 007611 285 --CHVANVGATPGLTRSMQE-VQL--DKNVKLLDCPGVVMLKSGE--NDASIALRNCKRIEKLDDPVGP---VKEILNRC 354 (596)
Q Consensus 285 --~kv~~vs~~PgtTr~~q~-v~l--~~~i~LiDTPGI~~~~~~~--~~~~~~L~~~~~i~~l~D~~~~---v~~iL~~~ 354 (596)
.+++.||+.||+|+...+ +.+ ...++++|||||+.|...+ ..+.++|.+|.. +++.++... ...+|++.
T Consensus 169 rk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vk-d~~V~~~~~adylL~~lN~~ 247 (335)
T KOG2485|consen 169 RKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVK-DHLVGEETIADYLLYLLNSH 247 (335)
T ss_pred hhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhccccc-ccccCHHHHHHHHHHHHhcc
Confidence 357889999999999887 444 5679999999999996654 445666666653 244444333 33445555
Q ss_pred CcchhhhhhCCCC--CCCHHHHHHHHHHHhccccc-----C----C--cccHHHHHHHHHHHHHcCCCC
Q 007611 355 PANLLISLYKLPS--FDSVDDFLQKVATVRGKLKK-----G----G--IVDVEAAARIILHDWNEGKIP 410 (596)
Q Consensus 355 ~~~~L~~l~ki~~--~~~~~e~L~~la~~~g~l~k-----g----g--i~di~aaa~~~L~d~~~Gki~ 410 (596)
....-...++... ..+.+.-+..++.++.+..+ | . .+.+-++++.++.-++.|.+.
T Consensus 248 ~~~~y~~~l~~~~~~~dd~~~nl~~l~v~~~~~~k~s~fdg~~~~ei~~~~~ln~~e~~l~~~rsg~l~ 316 (335)
T KOG2485|consen 248 SDFSYVKDLKPGSTPADDIEQNLAVLAVRRTKNEKVSAFDGNNKLEIEQPNLLNLARFFLATFRSGLLG 316 (335)
T ss_pred CcchhHHHhccCCCccccHHHHHHHHHHHHHhcceeeEecCCceeEEechHHHHHHHHHHHHHHhcccc
Confidence 4443333333322 23555666667766655432 1 1 234678889999999999865
No 12
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.93 E-value=6.3e-25 Score=210.69 Aligned_cols=158 Identities=34% Similarity=0.599 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEc
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKC 212 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~ 212 (596)
++.++++++.+++||+||+|+|+++|++.....+...+ .++|+|+|+||+||++.+.+..|+.|++.....+.+
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~-- 80 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF-- 80 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE--
Confidence 45778999999999999999999999988776665544 368999999999999887778899988765433222
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc-------cccccceEEEeecCCCCCcchHHHhhhcc
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS-------HEIKKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~-------~~~k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
+|+....|.+.|...|..+.+. ......++|+++|.||||||||+|+|++.
T Consensus 81 ----------------------iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 81 ----------------------VNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred ----------------------EECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 2334567888888888776421 11124578999999999999999999999
Q ss_pred ccccccCCCCceeeeEEEEeCCcEEEEecCCCc
Q 007611 286 HVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318 (596)
Q Consensus 286 kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~ 318 (596)
..+.+++.||||+..+.+.++..+.|+|||||+
T Consensus 139 ~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 139 KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred CceeecCCCCEEeeeEEEEecCCEEEEECCCCC
Confidence 888999999999999999988889999999985
No 13
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=8.8e-26 Score=229.70 Aligned_cols=202 Identities=22% Similarity=0.240 Sum_probs=162.1
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHh
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIAL 331 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~-----~~~~~~~L 331 (596)
.++++|+|||+||||||||+|+|+|.+++.||+.|+|||+...+.. +.||+|+|||||+.|+.. ...+..+|
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999776443 679999999999999653 34567788
Q ss_pred hccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccHHHHHHHHHHHH
Q 007611 332 RNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDW 404 (596)
Q Consensus 332 ~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di~aaa~~~L~d~ 404 (596)
..|+.+.++.|... .+.+.|+....+.++.+|++|.+.+...++..++.....+.+..++.+||.....+..|
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L 163 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTL 163 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHH
Confidence 99999988876543 22333444345889999999998877667777787788888889999999888877777
Q ss_pred HcCCCCcccCCCCCCCCCCchhhhhHhhhccCccchhcccccccccCCccccccCCccccCCCCccccccc
Q 007611 405 NEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAM 475 (596)
Q Consensus 405 ~~Gki~~~~~pp~~~~~~~~~~~iv~~~~~~f~~~el~~~e~~~~~~l~~l~~~~~~e~~~~~p~~~d~~~ 475 (596)
.+-...+ +|+. +.+++.+.+++.+.+|.+.||++ |+ ++..++.|+||+..+.+++--
T Consensus 164 ~~~i~~~--Lpeg---~~~yp~d~itD~~~rf~~aEiiR-Ek--------~~~~l~eElPhsv~VeIe~~~ 220 (298)
T COG1159 164 LEIIKEY--LPEG---PWYYPEDQITDRPERFLAAEIIR-EK--------LLLLLREELPHSVAVEIEEFE 220 (298)
T ss_pred HHHHHHh--CCCC---CCcCChhhccCChHHHHHHHHHH-HH--------HHHhcccccCceEEEEEEEEE
Confidence 6543332 3442 34678889999999999999999 55 677788999999999887644
No 14
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.91 E-value=1.2e-23 Score=198.16 Aligned_cols=154 Identities=45% Similarity=0.702 Sum_probs=123.7
Q ss_pred HHHHHHHHhh-hcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEc
Q 007611 135 FYKELVKVIE-VSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKC 212 (596)
Q Consensus 135 ~~kel~kvie-~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~-~ptv~f~~ 212 (596)
+|+++.+.+. .+|+||+|+|+++|.......+.+++.. .++|+|+|+||+||++.+....|..+.... +|.+.+
T Consensus 1 ~~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~i-- 76 (156)
T cd01859 1 MWKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYV-- 76 (156)
T ss_pred CHHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEE--
Confidence 4666665555 4999999999999988888777766543 369999999999999877777777444332 233333
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccC
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGA 292 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~ 292 (596)
|+....|.+.|++.|..+.+... ...+|++||.||||||||+|+|.+...+.+++
T Consensus 77 -----------------------Sa~~~~gi~~L~~~l~~~~~~~~--~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~ 131 (156)
T cd01859 77 -----------------------SAKERLGTKILRRTIKELAKIDG--KEGKVGVVGYPNVGKSSIINALKGRHSASTSP 131 (156)
T ss_pred -----------------------EccccccHHHHHHHHHHHHhhcC--CCcEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 34456788999999988876433 45789999999999999999999988888999
Q ss_pred CCCceeeeEEEEeCCcEEEEecCCC
Q 007611 293 TPGLTRSMQEVQLDKNVKLLDCPGV 317 (596)
Q Consensus 293 ~PgtTr~~q~v~l~~~i~LiDTPGI 317 (596)
++|+|++.+.+.++..+.|+|||||
T Consensus 132 ~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 132 SPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCCeeeeeEEEEcCCCEEEEECcCC
Confidence 9999999998888889999999997
No 15
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.91 E-value=8.5e-24 Score=205.85 Aligned_cols=152 Identities=28% Similarity=0.462 Sum_probs=117.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHH-hc--CCe
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLR-EE--LPA 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~----l~~Wl~yLr-~~--~pt 207 (596)
|...+..+++.+|+||+|+|+++|.+.....+... ..++|+|+|+||+||++.+. +..|...+. +. ++.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLF----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHh----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 67788889999999999999999987766665221 24689999999999987543 445652221 11 110
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcccc
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHV 287 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv 287 (596)
. ...++|+..+.|.+.|++.|..+.+ ...+|++||.||||||||||+|.+...
T Consensus 100 ~----------------------~i~~vSA~~~~gi~eL~~~l~~~l~-----~~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 100 K----------------------DVILISAKKGWGVEELINAIKKLAK-----KGGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred c----------------------cEEEEECCCCCCHHHHHHHHHHHhh-----cCCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 0 0113455677899999999988765 347899999999999999999998543
Q ss_pred --------ccccCCCCceeeeEEEEeCCcEEEEecCCC
Q 007611 288 --------ANVGATPGLTRSMQEVQLDKNVKLLDCPGV 317 (596)
Q Consensus 288 --------~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI 317 (596)
+.++..||||++++.+.++..+.|||||||
T Consensus 153 ~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 153 GKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred cccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 468899999999999999878999999997
No 16
>PF08701 GN3L_Grn1: GNL3L/Grn1 putative GTPase; InterPro: IPR014813 Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA []. This family contains a potential nuclear localisation signal.
Probab=99.90 E-value=4.4e-24 Score=177.96 Aligned_cols=73 Identities=56% Similarity=0.780 Sum_probs=64.2
Q ss_pred hhhhhhHHHHHHhhhhhhHHHhhccccCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007611 16 RKKYKIIKKVKEHHKKKAKEAKKLNLSGKRKVEKDPGIPNDWPFKEQELKALEARRARALKELEQKKAARKERA 89 (596)
Q Consensus 16 ~~r~ki~kKv~eh~rK~rk~akk~~~~~~~k~~KdpgiPn~~pfKe~il~~~e~~r~~~~e~~~~~k~~~k~~~ 89 (596)
++||+|+|||+||+||+||+|||++.| +++.+|||||||+|||||+||.+|++.+++++++.+++++.++...
T Consensus 1 r~kykI~KKv~eh~RK~rK~aKK~~~~-k~k~kKdpgIPN~~PfKe~iL~eie~~k~~~ee~k~~~ke~rk~~~ 73 (79)
T PF08701_consen 1 RQKYKIEKKVKEHNRKLRKEAKKNPTW-KSKKKKDPGIPNSFPFKEEILKEIEEKKERAEEEKEKQKEARKKEK 73 (79)
T ss_pred CchHHHHHHHHHHhHHHHHHHhcCccc-cCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999976 5667899999999999999999999999998877777666655443
No 17
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=215.97 Aligned_cols=234 Identities=21% Similarity=0.300 Sum_probs=167.6
Q ss_pred ccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeE
Q 007611 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAV 208 (596)
Q Consensus 129 ~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv 208 (596)
+...+.+..|...+++.||+||+|+|+|..++.....+.++++. .+||+|||+||+|-...+.. ...|+.--+.
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~~--~~efyslG~g-- 140 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEEL--AYEFYSLGFG-- 140 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhhh--HHHHHhcCCC--
Confidence 45778899999999999999999999999999999999999884 47999999999997743321 2233332221
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh-cc--cc---ccceEEEeecCCCCCcchHHHhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR-SH--EI---KKSITVGVIGLPNVGKSSLINSL 282 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~-~~--~~---k~~i~V~vVG~PNVGKSSLINsL 282 (596)
...++|+..+.|...|++.+-.+.+ .. .. ...++|+|||+||||||||+|+|
T Consensus 141 ----------------------~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~i 198 (444)
T COG1160 141 ----------------------EPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAI 198 (444)
T ss_pred ----------------------CceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHh
Confidence 1124566788999999999888763 11 11 14699999999999999999999
Q ss_pred hccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCC--------CChHHHHHhhccccccccCCCchhHH---
Q 007611 283 KRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKS--------GENDASIALRNCKRIEKLDDPVGPVK--- 348 (596)
Q Consensus 283 ~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~--------~~~~~~~~L~~~~~i~~l~D~~~~v~--- 348 (596)
++...+.|++.|||||+...+.+ +..++||||.|+-.... ....+..++..++.+..+.|...++.
T Consensus 199 lgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD 278 (444)
T COG1160 199 LGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD 278 (444)
T ss_pred ccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH
Confidence 99999999999999999887665 57899999999965421 12344556666665555555443322
Q ss_pred ----HHHhhCCcchhhhhhCCCCCCC----HHHHHHHHHHHhcccccCCc
Q 007611 349 ----EILNRCPANLLISLYKLPSFDS----VDDFLQKVATVRGKLKKGGI 390 (596)
Q Consensus 349 ----~iL~~~~~~~L~~l~ki~~~~~----~~e~L~~la~~~g~l~kggi 390 (596)
.+....++..++++|+-|.+.. .+++-..+-+...++....+
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i 328 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPI 328 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeE
Confidence 2344456677888899887653 23344444444455544333
No 18
>PRK13796 GTPase YqeH; Provisional
Probab=99.88 E-value=5.9e-22 Score=212.23 Aligned_cols=157 Identities=28% Similarity=0.441 Sum_probs=121.0
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH----HHHHHHHHHHHhcCCeEE
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR----ESVEKWLKYLREELPAVA 209 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~----e~l~~Wl~yLr~~~ptv~ 209 (596)
.|.+.+..+-+..++|++|+|++|+.++..+.+.+++ +++++++|+||+||+|+ +.+..|+.++.+.+...
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~- 132 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR- 132 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC-
Confidence 4555444443334499999999999999888887765 36899999999999974 35777988776543210
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcc----
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRC---- 285 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~---- 285 (596)
+ ....++|+....|++.|++.|..+.. ...|.|||.||||||||||+|++.
T Consensus 133 ~-------------------~~v~~vSAk~g~gI~eL~~~I~~~~~------~~~v~vvG~~NvGKSTLiN~L~~~~~~~ 187 (365)
T PRK13796 133 P-------------------VDVVLISAQKGHGIDELLEAIEKYRE------GRDVYVVGVTNVGKSTLINRIIKEITGE 187 (365)
T ss_pred c-------------------CcEEEEECCCCCCHHHHHHHHHHhcC------CCeEEEEcCCCCcHHHHHHHHHhhccCc
Confidence 0 00113455667899999999987743 357999999999999999999854
Q ss_pred -ccccccCCCCceeeeEEEEeCCcEEEEecCCCccC
Q 007611 286 -HVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 286 -kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
+.+.+++.||||++.+++.++....|+|||||...
T Consensus 188 ~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 188 KDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIHR 223 (365)
T ss_pred cceEEecCCCCccceeEEEEcCCCcEEEECCCcccc
Confidence 35568999999999999999888999999999854
No 19
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.87 E-value=9.9e-22 Score=210.17 Aligned_cols=159 Identities=30% Similarity=0.447 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCe
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPA 207 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e----~l~~Wl~yLr~~~pt 207 (596)
...|...+..+...+|+|++|+|+.|+.++..+.+.+.+ .++|+++|+||+||+|++ .+..|+..+.+.+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL 125 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 455777777778899999999999999999998888775 368999999999999764 466777533333211
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccc-
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCH- 286 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~k- 286 (596)
.. ....++|+..+.|++.|++.|..+.. ...|+|||.||||||||||+|++..
T Consensus 126 ~~--------------------~~i~~vSAk~g~gv~eL~~~l~~~~~------~~~v~~vG~~nvGKStliN~l~~~~~ 179 (360)
T TIGR03597 126 KP--------------------VDIILVSAKKGNGIDELLDKIKKARN------KKDVYVVGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred Cc--------------------CcEEEecCCCCCCHHHHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHHhhcc
Confidence 00 01113456678899999999988632 2689999999999999999999853
Q ss_pred ----cccccCCCCceeeeEEEEeCCcEEEEecCCCccC
Q 007611 287 ----VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 287 ----v~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
++.+++.||||+..+.+.++.++.|+|||||...
T Consensus 180 ~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 180 GDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred CCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCCh
Confidence 5689999999999999999888999999999876
No 20
>PRK12289 GTPase RsgA; Reviewed
Probab=99.84 E-value=1.2e-20 Score=200.65 Aligned_cols=145 Identities=30% Similarity=0.380 Sum_probs=116.0
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEcchhHHhh
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKCSTQEQRA 219 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~-~ptv~f~~~~~~~~~ 219 (596)
.+.++|+||+|+|+.+|.. ....+++++..+ ..++|+|||+||+||++.+.+..|..+|... ++.+.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~-~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~---------- 154 (352)
T PRK12289 86 PVANADQILLVFALAEPPL-DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLF---------- 154 (352)
T ss_pred hhhcCCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEE----------
Confidence 4789999999999998853 223566766542 2479999999999999888788999888653 33322
Q ss_pred hcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCC----
Q 007611 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG---- 295 (596)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pg---- 295 (596)
+|+..+.|.+.|++.|.. ..++|+|.||||||||||+|++.....|+.++|
T Consensus 155 ---------------iSA~tg~GI~eL~~~L~~----------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~r 209 (352)
T PRK12289 155 ---------------ISVETGIGLEALLEQLRN----------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGR 209 (352)
T ss_pred ---------------EEcCCCCCHHHHhhhhcc----------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCC
Confidence 234456788888888854 247999999999999999999988888999998
Q ss_pred ---ceeeeEEEEeCCcEEEEecCCCccCCC
Q 007611 296 ---LTRSMQEVQLDKNVKLLDCPGVVMLKS 322 (596)
Q Consensus 296 ---tTr~~q~v~l~~~i~LiDTPGI~~~~~ 322 (596)
||++.+.+.++....|+|||||..+..
T Consensus 210 GrHTT~~~~l~~l~~g~~liDTPG~~~~~l 239 (352)
T PRK12289 210 GRHTTRHVELFELPNGGLLADTPGFNQPDL 239 (352)
T ss_pred CCCcCceeEEEECCCCcEEEeCCCcccccc
Confidence 999999999976779999999987743
No 21
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.82 E-value=1.4e-19 Score=183.94 Aligned_cols=144 Identities=24% Similarity=0.301 Sum_probs=108.8
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHHHH-HHHHHHHHhc-CCeEEEEcchhHHh
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESV-EKWLKYLREE-LPAVAFKCSTQEQR 218 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l-~~Wl~yLr~~-~ptv~f~~~~~~~~ 218 (596)
.+.++|++++|.|+++|..+... +++++... ..+.++|||+||+||++...+ ..|..++.+. ++. |
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v--~-------- 101 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQV--L-------- 101 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeE--E--------
Confidence 57889999999999999865443 56655432 257899999999999865443 4788888653 222 2
Q ss_pred hhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCC----
Q 007611 219 ANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATP---- 294 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P---- 294 (596)
..|+..+.|++.|++.|.+ ..++|+|.||||||||||+|.+.....++..+
T Consensus 102 ---------------~~SAktg~gi~eLf~~l~~----------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~ 156 (245)
T TIGR00157 102 ---------------MTSSKNQDGLKELIEALQN----------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLG 156 (245)
T ss_pred ---------------EEecCCchhHHHHHhhhcC----------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCC
Confidence 2234456788888887753 36899999999999999999988766665554
Q ss_pred ---CceeeeEEEEeCCcEEEEecCCCccCCC
Q 007611 295 ---GLTRSMQEVQLDKNVKLLDCPGVVMLKS 322 (596)
Q Consensus 295 ---gtTr~~q~v~l~~~i~LiDTPGI~~~~~ 322 (596)
+||++.+.+.+ ....|+||||+.....
T Consensus 157 ~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l 186 (245)
T TIGR00157 157 LGKHTTTHVELFHF-HGGLIADTPGFNEFGL 186 (245)
T ss_pred CCCCcCCceEEEEc-CCcEEEeCCCccccCC
Confidence 49999999998 4668999999987643
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=1.5e-19 Score=197.17 Aligned_cols=210 Identities=23% Similarity=0.294 Sum_probs=149.5
Q ss_pred chHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEE
Q 007611 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVA 209 (596)
Q Consensus 131 ~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~-ptv~ 209 (596)
....+..+....+..+|+||+|+|+++++......+.+++... ++|+|+|+||+|+...+... ..+++-.+ +.+
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~~~--~~~~~lg~~~~~- 138 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKS--GKPVILVANKIDGKKEDAVA--AEFYSLGFGEPI- 138 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh--CCCEEEEEECccCCcccccH--HHHHhcCCCCeE-
Confidence 3567888889999999999999999999887777788888754 79999999999998755321 12222112 111
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccc-----cccceEEEeecCCCCCcchHHHhhhc
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE-----IKKSITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~-----~k~~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
.+|+..+.|.+.|++.+..+..... ....++|+|+|.||||||||+|+|++
T Consensus 139 ------------------------~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~ 194 (429)
T TIGR03594 139 ------------------------PISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLG 194 (429)
T ss_pred ------------------------EEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHC
Confidence 3455667788899888876654321 13468999999999999999999999
Q ss_pred cccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC--------hHHHHHhhccccccccCCCchhH------
Q 007611 285 CHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE--------NDASIALRNCKRIEKLDDPVGPV------ 347 (596)
Q Consensus 285 ~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~--------~~~~~~L~~~~~i~~l~D~~~~v------ 347 (596)
...+.+++.||||++.....+ +..+.|+||||+....... ......++.++.+..+.|....+
T Consensus 195 ~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~ 274 (429)
T TIGR03594 195 EERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR 274 (429)
T ss_pred CCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH
Confidence 888889999999998765443 4579999999997543221 11233567777766665543221
Q ss_pred -HHHHhhCCcchhhhhhCCCCCC
Q 007611 348 -KEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 348 -~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
...+...+.+.++++||+|...
T Consensus 275 ~~~~~~~~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 275 IAGLILEAGKALVIVVNKWDLVK 297 (429)
T ss_pred HHHHHHHcCCcEEEEEECcccCC
Confidence 1222333567888899999763
No 23
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=5.2e-19 Score=193.44 Aligned_cols=208 Identities=23% Similarity=0.281 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCC-eEEE
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELP-AVAF 210 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~p-tv~f 210 (596)
...+..+....+..+|+||+|+|+++++......+.+++... ++|+|+|+||+|+...+. ....++.-.++ .+
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~D~~~~~~--~~~~~~~lg~~~~~-- 140 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS--NKPVILVVNKVDGPDEEA--DAYEFYSLGLGEPY-- 140 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCccchh--hHHHHHhcCCCCCE--
Confidence 344566677889999999999999999877777777777654 799999999999875332 11222222221 12
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccc----cccceEEEeecCCCCCcchHHHhhhccc
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE----IKKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~----~k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
.+|+..+.|++.|++.+........ ....++|+|||.||||||||+|+|++..
T Consensus 141 -----------------------~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 141 -----------------------PISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred -----------------------EEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 2344567788888888765332211 2347999999999999999999999998
Q ss_pred cccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC--------hHHHHHhhccccccccCCCchh-------HH
Q 007611 287 VANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE--------NDASIALRNCKRIEKLDDPVGP-------VK 348 (596)
Q Consensus 287 v~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~--------~~~~~~L~~~~~i~~l~D~~~~-------v~ 348 (596)
.+.+++.||+|++.....+ +..+.|+||||+....... ......+..++.+..+.|.... +.
T Consensus 198 ~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~ 277 (435)
T PRK00093 198 RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIA 277 (435)
T ss_pred ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH
Confidence 8889999999998775443 5579999999997653321 1122356667666655554321 12
Q ss_pred HHHhhCCcchhhhhhCCCCC
Q 007611 349 EILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 349 ~iL~~~~~~~L~~l~ki~~~ 368 (596)
.++.....+.++++||+|..
T Consensus 278 ~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 278 GLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred HHHHHcCCcEEEEEECccCC
Confidence 23334456778889999876
No 24
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=4.8e-19 Score=196.01 Aligned_cols=210 Identities=20% Similarity=0.201 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEE
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFK 211 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~ 211 (596)
...|..+....+..||+||+|+|++++.+.....+.+++.. .++|+|||+||+||...+. ....++...+.. +|
T Consensus 104 ~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~~-~~- 177 (472)
T PRK03003 104 QASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWSLGLGE-PH- 177 (472)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHhcCCCC-eE-
Confidence 34567777888999999999999999987666667677664 3799999999999975321 111222211211 11
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhcc--c---cccceEEEeecCCCCCcchHHHhhhccc
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH--E---IKKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~--~---~k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
.+|+..+.|++.|++.|-...... . ....++|+|||.||||||||+|+|++..
T Consensus 178 ----------------------~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~ 235 (472)
T PRK03003 178 ----------------------PVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEE 235 (472)
T ss_pred ----------------------EEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566788888888776555431 1 1246899999999999999999999998
Q ss_pred cccccCCCCceeeeEEEE--e-CCcEEEEecCCCccCCCCC--hH------HHHHhhccccccccCCCchh-------HH
Q 007611 287 VANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGE--ND------ASIALRNCKRIEKLDDPVGP-------VK 348 (596)
Q Consensus 287 v~~vs~~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~~--~~------~~~~L~~~~~i~~l~D~~~~-------v~ 348 (596)
.+.+++.||||++..... + +..+.|+||||+....... .. ....+++++.+..+.|.... +.
T Consensus 236 ~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~ 315 (472)
T PRK03003 236 RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVL 315 (472)
T ss_pred cccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH
Confidence 778999999999865432 3 4578999999985431110 11 12345677776666554321 11
Q ss_pred HHHhhCCcchhhhhhCCCCCC
Q 007611 349 EILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 349 ~iL~~~~~~~L~~l~ki~~~~ 369 (596)
..+...+.+.+++.||+|...
T Consensus 316 ~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 316 SMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHcCCCEEEEEECcccCC
Confidence 122234557788889998754
No 25
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.79 E-value=1.4e-18 Score=180.46 Aligned_cols=146 Identities=24% Similarity=0.246 Sum_probs=109.8
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHh-cCCeEEEEcchhH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLRE-ELPAVAFKCSTQE 216 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~-~~ptv~f~~~~~~ 216 (596)
.+-++.++|++|+|+|+++|.. ....+++++... ..++|+|+|+||+||++......|..++.. .++++.+
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~-s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~v------ 144 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFF-NPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAV------ 144 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCC-CHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEE------
Confidence 4557889999999999999982 233566665432 247899999999999987665667776554 2444333
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCC---
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGAT--- 293 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~--- 293 (596)
|+..+.|.+.|...|.+ ..++++|.+|||||||||+|++.....++..
T Consensus 145 -------------------SA~~g~gi~~L~~~L~~----------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~ 195 (287)
T cd01854 145 -------------------SAKTGEGLDELREYLKG----------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEK 195 (287)
T ss_pred -------------------ECCCCccHHHHHhhhcc----------ceEEEECCCCCCHHHHHHHHhchhhccccceecc
Confidence 33456788888877763 4699999999999999999998765554433
Q ss_pred ----CCceeeeEEEEeCCcEEEEecCCCccC
Q 007611 294 ----PGLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 294 ----PgtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
++||++.+.+.+....+|+||||+...
T Consensus 196 ~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~ 226 (287)
T cd01854 196 LGRGRHTTTHRELFPLPGGGLLIDTPGFREF 226 (287)
T ss_pred CCCCCcccceEEEEEcCCCCEEEECCCCCcc
Confidence 458999999999767799999999543
No 26
>PRK12288 GTPase RsgA; Reviewed
Probab=99.79 E-value=2.1e-18 Score=183.36 Aligned_cols=150 Identities=25% Similarity=0.282 Sum_probs=112.2
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHH---HHHHHHHHHHhc-CCeEE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE---SVEKWLKYLREE-LPAVA 209 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e---~l~~Wl~yLr~~-~ptv~ 209 (596)
+++..+-+..++|.++.|.+...+++. ..+++++..+ ..+.|.||||||+||++.+ .+..|+.+|... ++.+.
T Consensus 110 ~~~~~q~iaANvD~vlIV~s~~p~~s~--~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~ 187 (347)
T PRK12288 110 YYDGVKPIAANIDQIVIVSAVLPELSL--NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLM 187 (347)
T ss_pred cccccceEEEEccEEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEE
Confidence 334444467899999988887533332 2456665433 2478999999999999854 467888877553 33332
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcccccc
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVAN 289 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~ 289 (596)
+|+....|.+.|++.|.. ..++|||.||||||||||+|++.....
T Consensus 188 -------------------------vSA~tg~GideL~~~L~~----------ki~~~vG~sgVGKSTLiN~Ll~~~~~~ 232 (347)
T PRK12288 188 -------------------------VSSHTGEGLEELEAALTG----------RISIFVGQSGVGKSSLINALLPEAEIL 232 (347)
T ss_pred -------------------------EeCCCCcCHHHHHHHHhh----------CCEEEECCCCCCHHHHHHHhcccccee
Confidence 233456788999988864 137899999999999999999998888
Q ss_pred ccCCCC-------ceeeeEEEEeCCcEEEEecCCCccCC
Q 007611 290 VGATPG-------LTRSMQEVQLDKNVKLLDCPGVVMLK 321 (596)
Q Consensus 290 vs~~Pg-------tTr~~q~v~l~~~i~LiDTPGI~~~~ 321 (596)
|+..++ ||++.+.+.++....|||||||-...
T Consensus 233 t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~ 271 (347)
T PRK12288 233 VGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFG 271 (347)
T ss_pred eccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCccc
Confidence 888875 89999999998778899999997653
No 27
>PRK00098 GTPase RsgA; Reviewed
Probab=99.78 E-value=2.6e-18 Score=179.41 Aligned_cols=145 Identities=23% Similarity=0.290 Sum_probs=110.4
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCC-CHHHHHHHHHHHHhc-CCeEEEEcchhH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLV-PRESVEKWLKYLREE-LPAVAFKCSTQE 216 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLV-p~e~l~~Wl~yLr~~-~ptv~f~~~~~~ 216 (596)
+.++.++|++|+|+|+.+|..... .+++++... ..++|+|+|+||+||+ +.+....|..++... ++.+.+
T Consensus 75 q~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~v------ 147 (298)
T PRK00098 75 KLIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLEL------ 147 (298)
T ss_pred cceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEE------
Confidence 446799999999999999865433 345554321 2478999999999998 455677788877543 343333
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCC-
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG- 295 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pg- 295 (596)
|+..+.|.+.|++.|.. ..++++|.||||||||||+|++.....++..++
T Consensus 148 -------------------SA~~g~gi~~L~~~l~g----------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~ 198 (298)
T PRK00098 148 -------------------SAKEGEGLDELKPLLAG----------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEA 198 (298)
T ss_pred -------------------eCCCCccHHHHHhhccC----------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceecc
Confidence 33456788888877743 468999999999999999999987777777764
Q ss_pred ------ceeeeEEEEeCCcEEEEecCCCccC
Q 007611 296 ------LTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 296 ------tTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
||++.+.+.++....|+||||+...
T Consensus 199 ~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~ 229 (298)
T PRK00098 199 LGRGKHTTTHVELYDLPGGGLLIDTPGFSSF 229 (298)
T ss_pred CCCCCcccccEEEEEcCCCcEEEECCCcCcc
Confidence 8999999988878899999999843
No 28
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=2e-18 Score=199.84 Aligned_cols=211 Identities=22% Similarity=0.249 Sum_probs=144.0
Q ss_pred chHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEE
Q 007611 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAF 210 (596)
Q Consensus 131 ~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f 210 (596)
....|..+....++.||+||+|+|+++.+......+.+.+.. .++|+|+|+||+|+....... ..++...+..+ |
T Consensus 340 ~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~~--~~~~~lg~~~~-~ 414 (712)
T PRK09518 340 IDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYDA--AEFWKLGLGEP-Y 414 (712)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhhH--HHHHHcCCCCe-E
Confidence 345677888889999999999999999877666667677654 479999999999997543211 12222222211 1
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccc-------cccceEEEeecCCCCCcchHHHhhh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE-------IKKSITVGVIGLPNVGKSSLINSLK 283 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~-------~k~~i~V~vVG~PNVGKSSLINsL~ 283 (596)
++|+..+.|++.|++.|-....... ....++|+|||.||||||||+|+|+
T Consensus 415 -----------------------~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~ 471 (712)
T PRK09518 415 -----------------------PISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLT 471 (712)
T ss_pred -----------------------EEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455677888888887765543311 1235899999999999999999999
Q ss_pred ccccccccCCCCceeeeEEEE--e-CCcEEEEecCCCccCCCCC--hH------HHHHhhccccccccCCCchh------
Q 007611 284 RCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGE--ND------ASIALRNCKRIEKLDDPVGP------ 346 (596)
Q Consensus 284 ~~kv~~vs~~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~~--~~------~~~~L~~~~~i~~l~D~~~~------ 346 (596)
+...+.+++.||||++..... + +.++.|+||||+....... .. ...+++.|+.+..+.|....
T Consensus 472 ~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~ 551 (712)
T PRK09518 472 HEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDL 551 (712)
T ss_pred CccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHH
Confidence 998888999999999876533 2 5678999999986432211 11 12345666666655554221
Q ss_pred -HHHHHhhCCcchhhhhhCCCCCC
Q 007611 347 -VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 347 -v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
+...+...+.+.++++||+|...
T Consensus 552 ~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 552 KVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHHHHHcCCCEEEEEEchhcCC
Confidence 11223334567888899998754
No 29
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=1.2e-19 Score=186.70 Aligned_cols=197 Identities=18% Similarity=0.165 Sum_probs=139.6
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC-----hHHHHHhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE-----NDASIALRNC 334 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~-----~~~~~~L~~~ 334 (596)
++|+|||+||||||||+|+|++.+++.|++.||||++...... +.+++|+||||+..+.... ..+...+.++
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 4799999999999999999999999999999999998654332 4579999999998763221 1234556778
Q ss_pred ccccccCCCch------hHHHHHhhCCcchhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHcCC
Q 007611 335 KRIEKLDDPVG------PVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGK 408 (596)
Q Consensus 335 ~~i~~l~D~~~------~v~~iL~~~~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di~aaa~~~L~d~~~Gk 408 (596)
+.+.++.|... .+...+.....+.++++|++|.. +...++..+...........++.+||..+..+..+.+..
T Consensus 81 Dvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l 159 (270)
T TIGR00436 81 DLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNK-FKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFI 159 (270)
T ss_pred CEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCC-CHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHH
Confidence 87776665432 22334555667888899999975 445555555554444444467778877766666555433
Q ss_pred CCcccCCCCCCCCCCchhhhhHhhhccCccchhcccccccccCCccccccCCccccCCCCcccccc
Q 007611 409 IPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEA 474 (596)
Q Consensus 409 i~~~~~pp~~~~~~~~~~~iv~~~~~~f~~~el~~~e~~~~~~l~~l~~~~~~e~~~~~p~~~d~~ 474 (596)
..+ +|+. +.+++.+.+++.+..|.++|+++ |. ++..++.|+||+..+.++.-
T Consensus 160 ~~~--l~~~---~~~~~~~~~t~~~~~~~~~e~ir-e~--------~~~~~~~e~p~~~~~~~~~~ 211 (270)
T TIGR00436 160 EVH--LPEG---PFRYPEDYVTDQPDRFKISEIIR-EK--------IIRYTKEEIPHSVRVEIERK 211 (270)
T ss_pred HHh--CCCC---CCCCCCcccCCCCHHHHHHHHHH-HH--------HHHhcccccCceEEEEEEEE
Confidence 222 2332 23456677888999999999999 55 66677899999999987653
No 30
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=3.2e-18 Score=183.15 Aligned_cols=186 Identities=23% Similarity=0.326 Sum_probs=137.7
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC------ChHHHHHhhc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG------ENDASIALRN 333 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~------~~~~~~~L~~ 333 (596)
..|+|||+||||||||+|.|++++.+.|+++||+||+...... +..+.||||+|+...... ...+..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999887542 678999999999965422 1456778889
Q ss_pred cccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHc
Q 007611 334 CKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNE 406 (596)
Q Consensus 334 ~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di~aaa~~~L~d~~~ 406 (596)
++.+.++.|... .+..+|.+..++.++++||++.... ++....+ -.|+.|.++.+|++....+.++.+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~-e~~~~ef----yslG~g~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA-EELAYEF----YSLGFGEPVPISAEHGRGIGDLLD 158 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh-hhhHHHH----HhcCCCCceEeehhhccCHHHHHH
Confidence 999988877543 3456777777899999999998632 2221111 127889999999999998888887
Q ss_pred CCCCcccCCCCCCCC----CCchhhhh--HhhhccCccchhcccccccccCCcc
Q 007611 407 GKIPYYTMPPARDQG----IPSEARIV--SELGKEFNVNEVYKNESSFIGSLKS 454 (596)
Q Consensus 407 Gki~~~~~pp~~~~~----~~~~~~iv--~~~~~~f~~~el~~~e~~~~~~l~~ 454 (596)
.-+.++. ++..... .+....|| ++.++.-.++.|+.++...+..+..
T Consensus 159 ~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aG 211 (444)
T COG1160 159 AVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG 211 (444)
T ss_pred HHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCC
Confidence 7666553 3322111 11222333 7788888888888888776666543
No 31
>PRK00089 era GTPase Era; Reviewed
Probab=99.68 E-value=1e-17 Score=173.95 Aligned_cols=199 Identities=19% Similarity=0.238 Sum_probs=132.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC-----hHHHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE-----NDASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~-----~~~~~~L~ 332 (596)
+++.|+|||.||||||||+|+|++.+++.+++.|+||++...... +.+++|+||||+..+.... ..+...+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999998765332 3589999999998764221 22334566
Q ss_pred ccccccccCCCch----hHHH---HHhhCCcchhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccHHHHHHHHHHHHH
Q 007611 333 NCKRIEKLDDPVG----PVKE---ILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWN 405 (596)
Q Consensus 333 ~~~~i~~l~D~~~----~v~~---iL~~~~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di~aaa~~~L~d~~ 405 (596)
.++.+..+.|... .... .+.....+.++++|++|...+...+...+...........++.+++.....+.++.
T Consensus 84 ~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 84 DVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELL 163 (292)
T ss_pred cCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHH
Confidence 7777766655432 1222 33333457888999999875555555544444433334456666655444333332
Q ss_pred cCCCCcccCCCCCCCCCCchhhhhHhhhccCccchhcccccccccCCccccccCCccccCCCCccccc
Q 007611 406 EGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDE 473 (596)
Q Consensus 406 ~Gki~~~~~pp~~~~~~~~~~~iv~~~~~~f~~~el~~~e~~~~~~l~~l~~~~~~e~~~~~p~~~d~ 473 (596)
+--..+ +|+. +..++.+.+++....|.+.++++ |. ++..++.|+||+..+.++.
T Consensus 164 ~~L~~~--l~~~---~~~y~~~~~td~~~r~~~~EiiR-e~--------~~~~l~~e~p~~~~v~~~~ 217 (292)
T PRK00089 164 DVIAKY--LPEG---PPYYPEDQITDRPERFLAAEIIR-EK--------LLRLLGDELPYSVAVEIEK 217 (292)
T ss_pred HHHHHh--CCCC---CCCCCCCCCCCCCHHHHHHHHHH-HH--------HHhhCCccCCceEEEEEEE
Confidence 211111 2321 12345566778888888999998 44 6667789999998888653
No 32
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.66 E-value=6.8e-17 Score=164.29 Aligned_cols=199 Identities=21% Similarity=0.313 Sum_probs=133.7
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC---------hHH
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE---------NDA 327 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~---------~~~ 327 (596)
.+++.|+|||.||||||||.|.+.|.++|+|+.+++|||+...+.+ ..|++|+||||++.+...- ++.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 4689999999999999999999999999999999999999887665 4589999999999875321 234
Q ss_pred HHHhhccccccccCCCc------hh-HHHHHhhCCc-chhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccHHHHHHH
Q 007611 328 SIALRNCKRIEKLDDPV------GP-VKEILNRCPA-NLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARI 399 (596)
Q Consensus 328 ~~~L~~~~~i~~l~D~~------~~-v~~iL~~~~~-~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di~aaa~~ 399 (596)
..++.+++.+..+.|.. .+ +...|..... +.++++|+++.......+|..... |..|.+-+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~----Lt~g~l~~------- 218 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDL----LTNGELAK------- 218 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHh----ccccccch-------
Confidence 55666777666555543 22 4444554433 677788898877655555554332 22222111
Q ss_pred HHHHHHcCCCCcccCCCCCCCCCCchhhhhHhhhccCccchhcccccccccCCccccccCCccccCCCCccccccccccc
Q 007611 400 ILHDWNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEEE 479 (596)
Q Consensus 400 ~L~d~~~Gki~~~~~pp~~~~~~~~~~~iv~~~~~~f~~~el~~~e~~~~~~l~~l~~~~~~e~~~~~p~~~d~~~~~d~ 479 (596)
....|.. .|+.-|...-+. -+..|+ -++.+|..++.+..+++.+.+.+ +...+.||-+|+.+++|++
T Consensus 219 ~kl~v~~----~f~~~p~~~~~~-----~~~gws---hfe~vF~vSaL~G~GikdlkqyL-msqa~~gpW~y~a~i~T~~ 285 (379)
T KOG1423|consen 219 LKLEVQE----KFTDVPSDEKWR-----TICGWS---HFERVFMVSALYGEGIKDLKQYL-MSQAPPGPWKYPADIVTEE 285 (379)
T ss_pred hhhhHHH----HhccCCcccccc-----cccCcc---cceeEEEEecccccCHHHHHHHH-HhcCCCCCCCCCccccccc
Confidence 1111221 122233211110 011121 23778888999999999999887 5566779999999999998
Q ss_pred ccc
Q 007611 480 NQH 482 (596)
Q Consensus 480 ~~~ 482 (596)
+.+
T Consensus 286 s~e 288 (379)
T KOG1423|consen 286 SPE 288 (379)
T ss_pred CHH
Confidence 665
No 33
>PRK15494 era GTPase Era; Provisional
Probab=99.64 E-value=6.5e-17 Score=171.84 Aligned_cols=196 Identities=19% Similarity=0.155 Sum_probs=130.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-CCcEEEEecCCCccCCCCC-----hHHHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGE-----NDASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~~-----~~~~~~L~ 332 (596)
++++|+|||.||||||||+|+|++.+++.+++.|+||++..... . +.++.|+||||+..+.... ..+...+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 56899999999999999999999999999999999999866533 2 5689999999997653221 12234567
Q ss_pred ccccccccCCCch---hH----HHHHhhCCcchhhhhhCCCCCCC-HHHHHHHHHHHhcccccCCcccHHHHHHHHHHHH
Q 007611 333 NCKRIEKLDDPVG---PV----KEILNRCPANLLISLYKLPSFDS-VDDFLQKVATVRGKLKKGGIVDVEAAARIILHDW 404 (596)
Q Consensus 333 ~~~~i~~l~D~~~---~v----~~iL~~~~~~~L~~l~ki~~~~~-~~e~L~~la~~~g~l~kggi~di~aaa~~~L~d~ 404 (596)
+++.+.++.|... .. ...+.....+.++++||+|.... ..++...+ ........++.+||.....+.++
T Consensus 131 ~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l---~~~~~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 131 SADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFL---TENHPDSLLFPISALSGKNIDGL 207 (339)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHH---HhcCCCcEEEEEeccCccCHHHH
Confidence 8887776655432 22 12233334456778899996432 12222211 11112234667777666544444
Q ss_pred HcCCCCcccCCCCCCCCCCchhhhhHhhhccCccchhcccccccccCCccccccCCccccCCCCccccc
Q 007611 405 NEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDE 473 (596)
Q Consensus 405 ~~Gki~~~~~pp~~~~~~~~~~~iv~~~~~~f~~~el~~~e~~~~~~l~~l~~~~~~e~~~~~p~~~d~ 473 (596)
.+--.. .+|+. +..++.+.+++.+.+|.+.||++ |. ++..++.|+||+..+.++.
T Consensus 208 ~~~L~~--~l~~~---~~~~~~~~~td~~~~~~~~eiiR-e~--------~~~~~~~EiP~~~~v~i~~ 262 (339)
T PRK15494 208 LEYITS--KAKIS---PWLYAEDDITDLPMRFIAAEITR-EQ--------LFLNLQKELPYKLTVQTEK 262 (339)
T ss_pred HHHHHH--hCCCC---CCCCCCCCCCCCCHHHHHHHHHH-HH--------HHhhCCcccCceEEEEEEE
Confidence 322111 13332 23466678899999999999999 55 7777889999999998753
No 34
>PRK01889 GTPase RsgA; Reviewed
Probab=99.60 E-value=4.8e-15 Score=158.52 Aligned_cols=143 Identities=25% Similarity=0.305 Sum_probs=101.2
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEEEcchhHHhh
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAFKCSTQEQRA 219 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e-~l~~Wl~yLr~~~ptv~f~~~~~~~~~ 219 (596)
++.++|.|++|+++..++. ...+++++..+ ..+.+.||||||+||++.. ....|+..+...++++...
T Consensus 109 iaANvD~vliV~s~~p~~~--~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vS-------- 178 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFN--LRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVS-------- 178 (356)
T ss_pred EEEeCCEEEEEEecCCCCC--hhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEE--------
Confidence 4688999999999964443 33677776543 2467889999999999862 2334554443334544433
Q ss_pred hcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCC------
Q 007611 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGAT------ 293 (596)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~------ 293 (596)
+....|.+.|...|.. .-+++|+|.||||||||+|+|.+.....+|..
T Consensus 179 -----------------a~~g~gl~~L~~~L~~---------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~ 232 (356)
T PRK01889 179 -----------------ALDGEGLDVLAAWLSG---------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSK 232 (356)
T ss_pred -----------------CCCCccHHHHHHHhhc---------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCC
Confidence 3345678888887752 24799999999999999999998765444433
Q ss_pred -CCceeeeEEEEeCCcEEEEecCCCccC
Q 007611 294 -PGLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 294 -PgtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
.++|+..+.+.+.....|+||||+...
T Consensus 233 g~~tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 233 GRHTTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred CcchhhhccEEEecCCCeecCCCchhhh
Confidence 247777777888777789999999544
No 35
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=2.7e-14 Score=147.20 Aligned_cols=174 Identities=25% Similarity=0.291 Sum_probs=117.5
Q ss_pred hhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHH--HHHHHHHhc-CCeEEEEcchhHHh
Q 007611 143 IEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVE--KWLKYLREE-LPAVAFKCSTQEQR 218 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~--~Wl~yLr~~-~ptv~f~~~~~~~~ 218 (596)
+.++|-+|+|+-+-+|-.+ ...|++++..+ ..+...||||||+||++.+... .++..++.. |+++...
T Consensus 77 v~n~d~~iiIvs~~~P~~~-~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s------- 148 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFN-TNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS------- 148 (301)
T ss_pred ccccceEEEEEeccCCCCC-HHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec-------
Confidence 3347778888888888643 34577776554 3477888899999999887665 466666543 4443332
Q ss_pred hhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccC------
Q 007611 219 ANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGA------ 292 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~------ 292 (596)
+....|.+.|..+|+. ...+++|.+|||||||||+|.......|+.
T Consensus 149 ------------------~~~~~~~~~l~~~l~~----------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~ 200 (301)
T COG1162 149 ------------------AKNGDGLEELAELLAG----------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLG 200 (301)
T ss_pred ------------------CcCcccHHHHHHHhcC----------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCC
Confidence 2334567777777764 367889999999999999999754333332
Q ss_pred -CCCceeeeEEEEeCCcEEEEecCCCccCCC--CC--------hHHHHHhhcccc--ccccCCCchhHHHHHh
Q 007611 293 -TPGLTRSMQEVQLDKNVKLLDCPGVVMLKS--GE--------NDASIALRNCKR--IEKLDDPVGPVKEILN 352 (596)
Q Consensus 293 -~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~--~~--------~~~~~~L~~~~~--i~~l~D~~~~v~~iL~ 352 (596)
--+||++...+.++..-.|||||||-.... .. .++...+..|.. +.|..+|.+++...+.
T Consensus 201 rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~ 273 (301)
T COG1162 201 RGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQCKFRDCTHTHEPGCAVKAAVE 273 (301)
T ss_pred CCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHH
Confidence 347999999999987888999999976543 11 123334334422 2356678777766553
No 36
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=1e-15 Score=165.27 Aligned_cols=175 Identities=18% Similarity=0.215 Sum_probs=108.2
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe--C-C-cEEEEecCCCccCCCCC----hHHHHHhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--D-K-NVKLLDCPGVVMLKSGE----NDASIALRNC 334 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l--~-~-~i~LiDTPGI~~~~~~~----~~~~~~L~~~ 334 (596)
..|+|||+||||||||||+|++.++ .|+++|+||+.++.+.+ + . +++|+||||++.+.+.. ..+...+..|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4699999999999999999999986 89999999999887654 2 3 59999999999764332 2334456777
Q ss_pred ccccccCCCc--------hhHHHH---Hhh-----CCcchhhhhhCCCCCCCHHHHHHHHHHHhcccccC-CcccHHHHH
Q 007611 335 KRIEKLDDPV--------GPVKEI---LNR-----CPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKG-GIVDVEAAA 397 (596)
Q Consensus 335 ~~i~~l~D~~--------~~v~~i---L~~-----~~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kg-gi~di~aaa 397 (596)
+.+.++.|.. ..+..+ |.. ...+.++++||+|... ..++...+......+... .++.+|+..
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~-~~el~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD-EEEAEERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC-hHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 7777666533 111222 222 2357788899999753 233333333222222221 355556555
Q ss_pred HHHHHHHHcCCCCcccCCCCCCCCCCchhhhhHhhhccCccchhccc
Q 007611 398 RIILHDWNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKN 444 (596)
Q Consensus 398 ~~~L~d~~~Gki~~~~~pp~~~~~~~~~~~iv~~~~~~f~~~el~~~ 444 (596)
...+.++...-..+ +|.. +..++.+.+++...+|.+.||+++
T Consensus 318 g~GIdeLl~~I~~~--L~~~---~~~~~~~~~td~~~~~~~~EiiRE 359 (390)
T PRK12298 318 GLGVKELCWDLMTF--IEEN---PREEAEEAEAPEKVEFMWDDYHRE 359 (390)
T ss_pred CcCHHHHHHHHHHH--hhhC---cccCCcccccCccHHHHHHHHHHH
Confidence 44444333221111 1110 122444566677778889999983
No 37
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.52 E-value=8.7e-15 Score=138.77 Aligned_cols=103 Identities=31% Similarity=0.419 Sum_probs=69.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChH---HHHHh--hcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEND---ASIAL--RNC 334 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~---~~~~L--~~~ 334 (596)
|+|++||.||||||||||+|+|.+ ..|+++||+|.....+.+ +..+.|+||||+........+ +...| ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 579999999999999999999999 589999999999887654 578999999999776443322 12222 345
Q ss_pred ccccccCCCchh-----HHHHHhhCCcchhhhhhCCC
Q 007611 335 KRIEKLDDPVGP-----VKEILNRCPANLLISLYKLP 366 (596)
Q Consensus 335 ~~i~~l~D~~~~-----v~~iL~~~~~~~L~~l~ki~ 366 (596)
+.+..+.|.... +...|...+.+.++++|++|
T Consensus 80 D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 80 DLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 555566665432 11223345667777777765
No 38
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.47 E-value=4.9e-14 Score=151.67 Aligned_cols=122 Identities=25% Similarity=0.320 Sum_probs=92.9
Q ss_pred HHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC-
Q 007611 248 KLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG- 323 (596)
Q Consensus 248 ~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~- 323 (596)
+++..+....-+...++|+|||.||||||||+|+|+++..++|++.|||||+..+..+ +-.+.|+||.||-.....
T Consensus 203 ~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~V 282 (454)
T COG0486 203 ELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVV 282 (454)
T ss_pred HHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHH
Confidence 3344433344456789999999999999999999999999999999999999988664 568999999999865332
Q ss_pred ----ChHHHHHhhccccccccCCCchh----HHHHHh--hCCcchhhhhhCCCCCC
Q 007611 324 ----ENDASIALRNCKRIEKLDDPVGP----VKEILN--RCPANLLISLYKLPSFD 369 (596)
Q Consensus 324 ----~~~~~~~L~~~~~i~~l~D~~~~----v~~iL~--~~~~~~L~~l~ki~~~~ 369 (596)
-..+...+..++.+.++.|...+ -..++. ...++.++++||+|...
T Consensus 283 E~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 283 ERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVS 338 (454)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhccc
Confidence 14567788999999888776542 122333 33457788889988654
No 39
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=4.3e-14 Score=137.56 Aligned_cols=110 Identities=25% Similarity=0.328 Sum_probs=81.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc-cccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChH-------HHH---
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEND-------ASI--- 329 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k-v~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~-------~~~--- 329 (596)
....|+++|++|||||||||+|++++ .+.||.+||.|+.+..+.++..+.|||.||+.+....... ...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 35679999999999999999999966 7899999999999999999999999999999998643210 011
Q ss_pred ---HhhccccccccCCC----chhHHHHHhhCCcchhhhhhCCCCCCC
Q 007611 330 ---ALRNCKRIEKLDDP----VGPVKEILNRCPANLLISLYKLPSFDS 370 (596)
Q Consensus 330 ---~L~~~~~i~~l~D~----~~~v~~iL~~~~~~~L~~l~ki~~~~~ 370 (596)
.|..+..+.....+ ...+.++|...+.+.+++++|+|.+..
T Consensus 103 ~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 103 KRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK 150 (200)
T ss_pred hchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh
Confidence 12222222211111 123456677788888889999998764
No 40
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.38 E-value=3.9e-13 Score=120.23 Aligned_cols=79 Identities=35% Similarity=0.449 Sum_probs=59.3
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEE--Ee-CCcEEEEecCCCccCCCCCh------HHHHHhhcc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKSGEN------DASIALRNC 334 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v--~l-~~~i~LiDTPGI~~~~~~~~------~~~~~L~~~ 334 (596)
+|+|+|.||||||||||+|++.+.+.+++.|++|+..... .+ +..+.|+||||+........ .+...+..|
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 5899999999999999999998888999999999998543 33 45779999999987643221 123333555
Q ss_pred ccccccCC
Q 007611 335 KRIEKLDD 342 (596)
Q Consensus 335 ~~i~~l~D 342 (596)
+.+.++.|
T Consensus 81 d~ii~vv~ 88 (116)
T PF01926_consen 81 DLIIYVVD 88 (116)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEE
Confidence 55555544
No 41
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.37 E-value=1e-12 Score=135.79 Aligned_cols=107 Identities=29% Similarity=0.386 Sum_probs=78.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCC-----ChHHHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSG-----ENDASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~-----~~~~~~~L~ 332 (596)
...+|.|.|+||||||||+++|++.++ .|+++|+||+..+.++++ ..+.+||||||..-... +..+..+|+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 467999999999999999999999997 899999999999988873 48999999999975322 123445565
Q ss_pred ccc-cccccCCCch----hHH-------HHHhhCCcchhhhhhCCCCC
Q 007611 333 NCK-RIEKLDDPVG----PVK-------EILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 333 ~~~-~i~~l~D~~~----~v~-------~iL~~~~~~~L~~l~ki~~~ 368 (596)
.+. .|.++.||.. .+. +|-.....+.+.++||+|..
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 543 3356667643 122 23333445677788888854
No 42
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=4e-12 Score=136.82 Aligned_cols=87 Identities=30% Similarity=0.441 Sum_probs=71.8
Q ss_pred cccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC------hHH
Q 007611 257 HEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE------NDA 327 (596)
Q Consensus 257 ~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~------~~~ 327 (596)
..+...+.|+|+|.||||||||+|+|.+..+++|++.|||||+..++.+ +..++|+||.||-...... ..+
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence 3455789999999999999999999999999999999999999888765 5689999999998832221 345
Q ss_pred HHHhhccccccccCCC
Q 007611 328 SIALRNCKRIEKLDDP 343 (596)
Q Consensus 328 ~~~L~~~~~i~~l~D~ 343 (596)
...+..++.+..+.|+
T Consensus 343 ~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 343 RKRIERADVILLVVDA 358 (531)
T ss_pred HHHHhhcCEEEEEecc
Confidence 5667778888777777
No 43
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.28 E-value=4.7e-12 Score=131.43 Aligned_cols=110 Identities=20% Similarity=0.290 Sum_probs=80.1
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEE--Ee--CCcEEEEecCCCccCCCCC----hHHHHHhhccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL--DKNVKLLDCPGVVMLKSGE----NDASIALRNCK 335 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v--~l--~~~i~LiDTPGI~~~~~~~----~~~~~~L~~~~ 335 (596)
-||+||+||||||||||++++.+. .++++|+||.++... .+ ...+++-|.|||+...+.. ..+...+..|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 499999999999999999999985 899999999998763 33 4569999999999875542 45666666666
Q ss_pred cccccCCCc-----hhHHH---H---H-----hhCCcchhhhhhCCCCCCCHHHH
Q 007611 336 RIEKLDDPV-----GPVKE---I---L-----NRCPANLLISLYKLPSFDSVDDF 374 (596)
Q Consensus 336 ~i~~l~D~~-----~~v~~---i---L-----~~~~~~~L~~l~ki~~~~~~~e~ 374 (596)
.+.++.|.. .|+.+ | | ....++.++++||+|...+.+++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~ 294 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEEL 294 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHH
Confidence 666664422 22322 2 1 23456788899999965554444
No 44
>PTZ00258 GTP-binding protein; Provisional
Probab=99.28 E-value=4.5e-12 Score=136.43 Aligned_cols=82 Identities=26% Similarity=0.347 Sum_probs=66.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe--------------------CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--------------------DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l--------------------~~~i~LiDTPGI~~~ 320 (596)
..++|||||+||||||||+|+|++.++ .++++||||+.++...+ +.+|.|+||||++..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 468899999999999999999999885 89999999998776543 236999999999976
Q ss_pred CCCC----hHHHHHhhccccccccCCC
Q 007611 321 KSGE----NDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 321 ~~~~----~~~~~~L~~~~~i~~l~D~ 343 (596)
.+.. ..+...+++|+.+.++.|.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 4322 3456678889888777654
No 45
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.27 E-value=1.2e-11 Score=133.98 Aligned_cols=80 Identities=29% Similarity=0.333 Sum_probs=61.9
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---------------------------CCcEEEEecC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---------------------------DKNVKLLDCP 315 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---------------------------~~~i~LiDTP 315 (596)
++|||||+||||||||+|+|++... .++++||+|+.+..+.. ..++.|+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 6899999999999999999999875 67999999988776321 1357899999
Q ss_pred CCccCCCCC----hHHHHHhhccccccccCCC
Q 007611 316 GVVMLKSGE----NDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 316 GI~~~~~~~----~~~~~~L~~~~~i~~l~D~ 343 (596)
|++...... ..+...+++|+.+.++.|.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~ 112 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDA 112 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeC
Confidence 998653322 3455668888888766554
No 46
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.26 E-value=6e-12 Score=137.23 Aligned_cols=104 Identities=20% Similarity=0.278 Sum_probs=73.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCC----hHHHHHhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGE----NDASIALRNC 334 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~----~~~~~~L~~~ 334 (596)
..|+|||+||||||||||+|++.+. .++++|+||+.+....+ +.+++|+||||++...+.. ..+...+..|
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4699999999999999999999885 68899999999887554 4689999999998643322 2233445556
Q ss_pred ccccccCCCc-----hhH---HHH---Hhh-----CCcchhhhhhCCCC
Q 007611 335 KRIEKLDDPV-----GPV---KEI---LNR-----CPANLLISLYKLPS 367 (596)
Q Consensus 335 ~~i~~l~D~~-----~~v---~~i---L~~-----~~~~~L~~l~ki~~ 367 (596)
+.+.++.|.. .++ ..+ |.. ..++.++++||+|.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 6666665542 122 122 222 24577788899885
No 47
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.25 E-value=6.7e-12 Score=133.74 Aligned_cols=80 Identities=29% Similarity=0.397 Sum_probs=64.1
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-C-----------------CcEEEEecCCCccCCC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-D-----------------KNVKLLDCPGVVMLKS 322 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-~-----------------~~i~LiDTPGI~~~~~ 322 (596)
++|||||+||||||||+|+|++.+ +.++++||||+++.... + + .++.|+||||++...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 789999999999999999999999 68999999999877533 2 1 2599999999997543
Q ss_pred CC----hHHHHHhhccccccccCCC
Q 007611 323 GE----NDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 323 ~~----~~~~~~L~~~~~i~~l~D~ 343 (596)
.. ..+...++.|+.+.++.|.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 32 2456678888888777554
No 48
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.24 E-value=8.9e-12 Score=132.35 Aligned_cols=107 Identities=24% Similarity=0.306 Sum_probs=74.3
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCC----hHHHHHhhc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGE----NDASIALRN 333 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~----~~~~~~L~~ 333 (596)
--.|+|||+||||||||||+|++.+. .|+++|+||+.++...+ ..+++|+||||++...+.. ..+...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 35699999999999999999999875 68999999999887543 2469999999998754332 223344555
Q ss_pred cccccccCCCch-----hHHHH---Hhh-----CCcchhhhhhCCCCCC
Q 007611 334 CKRIEKLDDPVG-----PVKEI---LNR-----CPANLLISLYKLPSFD 369 (596)
Q Consensus 334 ~~~i~~l~D~~~-----~v~~i---L~~-----~~~~~L~~l~ki~~~~ 369 (596)
|+.+.++.|... .+..+ |.. ...+.++++||+|...
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 666666655331 12212 222 2356778889988653
No 49
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.24 E-value=3.5e-12 Score=139.27 Aligned_cols=106 Identities=27% Similarity=0.368 Sum_probs=81.2
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHhhccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALRNCK 335 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~-----~~~~~~~L~~~~ 335 (596)
+|+|||.||||||||+|+|++.+.+.+++.||+|++.+...+ +..+.|+||||+...... ...+..++..++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999999998899999999998876543 567999999998643211 122445677888
Q ss_pred cccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 336 RIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 336 ~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
.+.++.|... .+..+|++...+.+++.||+|...
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 7777766532 234566777788899999999764
No 50
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.23 E-value=7.2e-12 Score=129.32 Aligned_cols=77 Identities=29% Similarity=0.415 Sum_probs=61.5
Q ss_pred EEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---C-----------------CcEEEEecCCCccCCCCC
Q 007611 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---D-----------------KNVKLLDCPGVVMLKSGE 324 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~-----------------~~i~LiDTPGI~~~~~~~ 324 (596)
|||||+||||||||+|+|++.++ .++++||||+.+....+ + .+|.|+||||++...+..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 68999999999999999999997 89999999998776432 2 149999999999764432
Q ss_pred ----hHHHHHhhccccccccCC
Q 007611 325 ----NDASIALRNCKRIEKLDD 342 (596)
Q Consensus 325 ----~~~~~~L~~~~~i~~l~D 342 (596)
..+...++.|+.+.++.|
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~ 101 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVR 101 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEe
Confidence 245566788888877754
No 51
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.23 E-value=4.9e-12 Score=129.86 Aligned_cols=142 Identities=23% Similarity=0.287 Sum_probs=97.1
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCC----hHHHHHh
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGE----NDASIAL 331 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~----~~~~~~L 331 (596)
+.--.||+||+||+|||||+|+|.+.+. .|+++++||-.++...+ ..+|.+-|.|||+...+.+ ..+...+
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence 4445799999999999999999999997 89999999999886543 3469999999999886654 4455666
Q ss_pred hccccccccCCCchh--------HHHH---Hh-----hCCcchhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccHHH
Q 007611 332 RNCKRIEKLDDPVGP--------VKEI---LN-----RCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEA 395 (596)
Q Consensus 332 ~~~~~i~~l~D~~~~--------v~~i---L~-----~~~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di~a 395 (596)
..|..+.++.|.... +..+ |+ ...++.+++.||||..+....+|..|++ .+....++.++|
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~---~lq~~~V~pvsA 349 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAK---RLQNPHVVPVSA 349 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHH---HcCCCcEEEeee
Confidence 667666666553321 1111 11 1234678888888875555556565554 333344666666
Q ss_pred HHHHHHHHHH
Q 007611 396 AARIILHDWN 405 (596)
Q Consensus 396 aa~~~L~d~~ 405 (596)
..+..+..+.
T Consensus 350 ~~~egl~~ll 359 (366)
T KOG1489|consen 350 KSGEGLEELL 359 (366)
T ss_pred ccccchHHHH
Confidence 6655554443
No 52
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.23 E-value=7.5e-12 Score=138.37 Aligned_cols=84 Identities=26% Similarity=0.360 Sum_probs=64.5
Q ss_pred cccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC----hHHHHHh
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE----NDASIAL 331 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~----~~~~~~L 331 (596)
++.-..|+|||+||||||||||+|++.+. .++++||||+.+....+ +.+++|+||||++...... ..+...+
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 34556799999999999999999999875 67999999999887554 4589999999998653322 2334456
Q ss_pred hccccccccCCC
Q 007611 332 RNCKRIEKLDDP 343 (596)
Q Consensus 332 ~~~~~i~~l~D~ 343 (596)
..|+.+.++.|.
T Consensus 235 eradvLv~VVD~ 246 (500)
T PRK12296 235 ERCAVLVHVVDC 246 (500)
T ss_pred HhcCEEEEEECC
Confidence 677777776554
No 53
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.17 E-value=1.1e-10 Score=111.12 Aligned_cols=74 Identities=31% Similarity=0.333 Sum_probs=52.8
Q ss_pred ccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcccccccc-------CCCCceeeeEEEEeCCcEE
Q 007611 238 SDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVG-------ATPGLTRSMQEVQLDKNVK 310 (596)
Q Consensus 238 s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs-------~~PgtTr~~q~v~l~~~i~ 310 (596)
....|.+.|.+.|++ -+++++|.+|||||||||+|.+.....++ .--+||++.+.+.++....
T Consensus 21 ~~~~g~~~l~~~l~~----------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~ 90 (161)
T PF03193_consen 21 KTGEGIEELKELLKG----------KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGY 90 (161)
T ss_dssp TTTTTHHHHHHHHTT----------SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEE
T ss_pred CCCcCHHHHHHHhcC----------CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcE
Confidence 356788888888865 46899999999999999999987543332 2346899999999988999
Q ss_pred EEecCCCccCC
Q 007611 311 LLDCPGVVMLK 321 (596)
Q Consensus 311 LiDTPGI~~~~ 321 (596)
||||||+-...
T Consensus 91 iIDTPGf~~~~ 101 (161)
T PF03193_consen 91 IIDTPGFRSFG 101 (161)
T ss_dssp EECSHHHHT--
T ss_pred EEECCCCCccc
Confidence 99999997653
No 54
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.16 E-value=5.3e-11 Score=127.28 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=75.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEE--Ee--CCcEEEEecCCCccCCCCC--hH---HHHHh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL--DKNVKLLDCPGVVMLKSGE--ND---ASIAL 331 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v--~l--~~~i~LiDTPGI~~~~~~~--~~---~~~~L 331 (596)
..++|+|||+||||||||+|+|++.. +.+.+.||+|+++... .+ +..+.|+||||++...+.+ .. ....+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999988 5788999999887653 33 3589999999996421111 11 22246
Q ss_pred hccccccccCCCchh--------HHHHHhhC---CcchhhhhhCCCCCC
Q 007611 332 RNCKRIEKLDDPVGP--------VKEILNRC---PANLLISLYKLPSFD 369 (596)
Q Consensus 332 ~~~~~i~~l~D~~~~--------v~~iL~~~---~~~~L~~l~ki~~~~ 369 (596)
.+++.+.++.|...+ +..+|..+ ..+.++++||+|...
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 677877777654321 12345443 356788889998653
No 55
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.15 E-value=4.4e-11 Score=126.84 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=74.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---C-CcEEEEecCCCccCCCCC----hHHHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---D-KNVKLLDCPGVVMLKSGE----NDASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~-~~i~LiDTPGI~~~~~~~----~~~~~~L~ 332 (596)
.--.|+|||+||||||||||+|++.+. .|+++|+||+.++...+ + .++.|+||||++...+.. ..+...+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 345699999999999999999999875 68999999998876543 2 589999999998653322 23334455
Q ss_pred ccccccccCCCch-----h---HHHH---Hhh-----CCcchhhhhhCCCCCC
Q 007611 333 NCKRIEKLDDPVG-----P---VKEI---LNR-----CPANLLISLYKLPSFD 369 (596)
Q Consensus 333 ~~~~i~~l~D~~~-----~---v~~i---L~~-----~~~~~L~~l~ki~~~~ 369 (596)
.|+.+.++.|... + +..+ |.. ...+.++++||+|...
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 5666665554331 1 2111 221 2356777889988653
No 56
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.15 E-value=2.2e-11 Score=125.63 Aligned_cols=83 Identities=30% Similarity=0.374 Sum_probs=69.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC----hHHHHHhhc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE----NDASIALRN 333 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~----~~~~~~L~~ 333 (596)
...+|++||+||||||||+|.|++.+. .++++|+||..+..+.+ +.+|.|+|+|||+...+.. ..+..+.|+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 357999999999999999999999984 89999999998887655 7799999999999875433 446678899
Q ss_pred cccccccCCCc
Q 007611 334 CKRIEKLDDPV 344 (596)
Q Consensus 334 ~~~i~~l~D~~ 344 (596)
|+.+..+.|..
T Consensus 141 ADlIiiVld~~ 151 (365)
T COG1163 141 ADLIIIVLDVF 151 (365)
T ss_pred CCEEEEEEecC
Confidence 99988776654
No 57
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.14 E-value=6.3e-11 Score=130.70 Aligned_cols=112 Identities=27% Similarity=0.331 Sum_probs=78.8
Q ss_pred ccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-CCcEEEEecCCCccCCCCC-----hHHHH
Q 007611 258 EIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGE-----NDASI 329 (596)
Q Consensus 258 ~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~~-----~~~~~ 329 (596)
.....++|+|||+||||||||+|+|++...+.+++.||+|++..... + +..+.|+||||+..+.... ..+..
T Consensus 211 ~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 34567899999999999999999999998888999999999876543 3 4578999999997532211 11234
Q ss_pred HhhccccccccCCCchh----HHHHHhh-CCcchhhhhhCCCCCC
Q 007611 330 ALRNCKRIEKLDDPVGP----VKEILNR-CPANLLISLYKLPSFD 369 (596)
Q Consensus 330 ~L~~~~~i~~l~D~~~~----v~~iL~~-~~~~~L~~l~ki~~~~ 369 (596)
.+.+++.+..+.|...+ ...++.. ...+.+++.||+|...
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccc
Confidence 56777777777664322 1122222 2457788889988653
No 58
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.13 E-value=6.7e-11 Score=137.45 Aligned_cols=171 Identities=23% Similarity=0.241 Sum_probs=110.2
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCH-HHH-HHHHHhhhhcc-
Q 007611 181 LLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGA-ETL-IKLLKNYSRSH- 257 (596)
Q Consensus 181 LVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~-~~L-l~lLk~y~~~~- 257 (596)
++++=.+|-..+.+...+.++...++...+...+ ..+.. ..--|. ..| ...+..+....
T Consensus 209 ~~idts~~~~~~v~~~i~~~i~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~~a~~~~~~~~~ 270 (712)
T PRK09518 209 TTLDNSDLDFDETLDLLIGLVEDAIEEQEYDQYA----ANLEG--------------YELDEGDEDLLEGSGFVAGDEKA 270 (712)
T ss_pred EEEECCCCCHHHHHHHHHHHHHhhhhhhhHHHHh----hcCcc--------------CCcCchhHHHhhCCCcccCcccc
Confidence 7888888988888888888888777654432100 00000 000011 111 11111111111
Q ss_pred ccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHH
Q 007611 258 EIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASI 329 (596)
Q Consensus 258 ~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~-----~~~~~~ 329 (596)
......+|+|||+||||||||+|+|++.+.+.|++.||+|++...... +.++.|+||||+...... ...+..
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 111246799999999999999999999998899999999999877543 457999999998743211 123345
Q ss_pred HhhccccccccCCCch---h----HHHHHhhCCcchhhhhhCCCCCC
Q 007611 330 ALRNCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 330 ~L~~~~~i~~l~D~~~---~----v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
.+..++.+.++.|... . +...|.....+.+++.||+|...
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 6778888887766532 2 33456666778899999999754
No 59
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.13 E-value=9e-11 Score=129.08 Aligned_cols=124 Identities=23% Similarity=0.304 Sum_probs=84.2
Q ss_pred HHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 245 TLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 245 ~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
.|.+++..+ ....+...++|+|||.||||||||+|+|++...+.|++.||||++.....+ +..+.|+||||+....
T Consensus 187 ~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 187 ELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA 265 (442)
T ss_pred HHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch
Confidence 344455555 334456789999999999999999999999888889999999998776443 4578999999996542
Q ss_pred CCC-----hHHHHHhhccccccccCCCch---hHHHHHhh---CCcchhhhhhCCCCCC
Q 007611 322 SGE-----NDASIALRNCKRIEKLDDPVG---PVKEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 322 ~~~-----~~~~~~L~~~~~i~~l~D~~~---~v~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
... ......+.+++.+..+.|... .-..++.. ...+.+++.||+|...
T Consensus 266 ~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 266 DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCC
Confidence 211 112345677777766654322 11112222 2456778889998653
No 60
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.12 E-value=9e-11 Score=108.51 Aligned_cols=110 Identities=26% Similarity=0.344 Sum_probs=73.3
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCCh-----HHHHHhhc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN-----DASIALRN 333 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~-----~~~~~L~~ 333 (596)
+.+|+++|.||+|||||+|+|++..++.+++.+++|+....... ...+.|+||||+..+..... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999998888888898887665433 24689999999986533211 11223444
Q ss_pred cccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCCCH
Q 007611 334 CKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFDSV 371 (596)
Q Consensus 334 ~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~~~ 371 (596)
++.+..+.|... .+...+.....+.++++||+|.....
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 127 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK 127 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH
Confidence 454444433322 12233444445677788888865333
No 61
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.12 E-value=5e-11 Score=130.62 Aligned_cols=107 Identities=28% Similarity=0.386 Sum_probs=80.9
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALRNC 334 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~-----~~~~~~~L~~~ 334 (596)
.+|+|||.||||||||+|+|++.+.+.++..||+|++.....+ +..+.|+||||+...... ......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999998889999999998775443 567999999999863210 11234467788
Q ss_pred ccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 335 KRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 335 ~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
+.+.++.|... .+..+|.....+.+++.|++|...
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 88877766432 233456677788899999999543
No 62
>PRK04213 GTP-binding protein; Provisional
Probab=99.12 E-value=2.2e-10 Score=111.86 Aligned_cols=56 Identities=32% Similarity=0.501 Sum_probs=49.1
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVM 319 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~ 319 (596)
..+|+|+|.+|||||||+|+|++.. ..++..||+|+....+..+ ++.|+||||+..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~ 64 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGF 64 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCcccc
Confidence 5789999999999999999999987 4688899999988777666 799999999754
No 63
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.10 E-value=1.6e-10 Score=111.35 Aligned_cols=109 Identities=28% Similarity=0.342 Sum_probs=74.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc-cccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChH-------HHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEND-------ASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k-v~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~-------~~~~L~ 332 (596)
...+|+|+|.+|||||||+|+|++.. +..+++.+|+|++...+..+.++.|+||||+......... ....++
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~ 96 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLE 96 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHH
Confidence 46789999999999999999999985 6778899999999888777778999999998765322111 112223
Q ss_pred c---cccccccCCCch---h----HHHHHhhCCcchhhhhhCCCCCC
Q 007611 333 N---CKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 333 ~---~~~i~~l~D~~~---~----v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
. ++.+..+.|... . +..++.....+.++++|++|...
T Consensus 97 ~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 97 KRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred hChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 2 223333333221 1 12334444556777888888653
No 64
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.10 E-value=6.7e-11 Score=131.33 Aligned_cols=109 Identities=26% Similarity=0.348 Sum_probs=81.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~-----~~~~~~~L~ 332 (596)
...+|+|||.||||||||+|+|++.+.+.+++.||+|++.....+ +..+.|+||||+...... ...+..++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 346899999999999999999999988889999999998776543 567899999998732111 112344677
Q ss_pred ccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 333 NCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 333 ~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
.|+.+.++.|... .+..+|.....+.+++.||+|...
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 8888877766432 233455666678889999999753
No 65
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.10 E-value=3.9e-10 Score=115.17 Aligned_cols=62 Identities=32% Similarity=0.366 Sum_probs=54.2
Q ss_pred cccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccC
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~ 320 (596)
....++|+|||.+|||||||+|+|++..++.++..+++|+..+.+.. +..+.||||||+...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 34689999999999999999999999998899999888888776653 457999999999865
No 66
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.10 E-value=1.1e-10 Score=114.30 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=50.0
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccC-CCCceeeeEEEEe---CCcEEEEecCCCccCCC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGA-TPGLTRSMQEVQL---DKNVKLLDCPGVVMLKS 322 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~-~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~ 322 (596)
++|+|||.||||||||+|+|+|...+.++. .+|+|+..+.+.. +.++.||||||+.....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 479999999999999999999998776654 5688988776542 56899999999997743
No 67
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.08 E-value=9.2e-11 Score=113.57 Aligned_cols=60 Identities=33% Similarity=0.513 Sum_probs=53.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc-cccccCCCCceeeeEEEEeCCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k-v~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
..++|+|||.+|||||||||+|++.. .+.+++.+|+|+..+.+.++.++.|+||||+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCc
Confidence 35789999999999999999999986 7788999999999888777889999999998654
No 68
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.2e-10 Score=123.06 Aligned_cols=81 Identities=30% Similarity=0.383 Sum_probs=66.5
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---------------------CCcEEEEecCCCccC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---------------------DKNVKLLDCPGVVML 320 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---------------------~~~i~LiDTPGI~~~ 320 (596)
++++||||.||||||||+|+|+... +.++++|+||..+..+.. ...+.|+|.+|++..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4789999999999999999999998 789999999998765321 125889999999987
Q ss_pred CCC----ChHHHHHhhccccccccCCC
Q 007611 321 KSG----ENDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 321 ~~~----~~~~~~~L~~~~~i~~l~D~ 343 (596)
.+. .+.+...||.++.|.++.+.
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~ 107 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRC 107 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEe
Confidence 543 46778889999988777543
No 69
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.05 E-value=1.9e-10 Score=108.34 Aligned_cols=104 Identities=21% Similarity=0.270 Sum_probs=67.6
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CC-cEEEEecCCCccCCCC----ChHHHHHhhccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DK-NVKLLDCPGVVMLKSG----ENDASIALRNCK 335 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~-~i~LiDTPGI~~~~~~----~~~~~~~L~~~~ 335 (596)
.|+|||.||||||||+|+|.+... .|+..|++|+.+....+ +. ++.|+||||+...... .......+..|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 489999999999999999998775 68889999987654432 33 7899999998643211 122233345566
Q ss_pred cccccCCCchh------HHH----HHhhC----CcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP------VKE----ILNRC----PANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~------v~~----iL~~~----~~~~L~~l~ki~~~ 368 (596)
.+..+.|.... +.. +...+ ..+.++++||+|..
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 66655554321 111 22221 34567777888754
No 70
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.01 E-value=2.8e-10 Score=105.14 Aligned_cols=104 Identities=26% Similarity=0.376 Sum_probs=72.4
Q ss_pred EeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHhhccccc
Q 007611 266 GVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALRNCKRI 337 (596)
Q Consensus 266 ~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~-----~~~~~~~L~~~~~i 337 (596)
+++|.+|||||||+|+|++.....++..|++|+....... +..+.++||||+...... .......++.++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999999987788899999987665432 457899999999864320 11223456666666
Q ss_pred cccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 338 EKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 338 ~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
..+.|+.. .+..++.....+.++++||+|...
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 55544322 123345555667788889988654
No 71
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.01 E-value=5.4e-10 Score=104.46 Aligned_cols=108 Identities=26% Similarity=0.305 Sum_probs=71.5
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-CCcEEEEecCCCccCCCCC--------hHHHHH
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGE--------NDASIA 330 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~~--------~~~~~~ 330 (596)
.++|+++|.||+|||||+|+|++.....++..|++|+...... . +..+.++||||+....... ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4789999999999999999999988777888999998765433 2 4568999999997552211 112234
Q ss_pred hhccccccccCCCchh-------HHHHHhhCCcchhhhhhCCCCCC
Q 007611 331 LRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 331 L~~~~~i~~l~D~~~~-------v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
+.+++.+..+.|...+ +...+.....+.++++|++|...
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 4566655555443221 11222223456677788887654
No 72
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.01 E-value=5.6e-10 Score=116.54 Aligned_cols=76 Identities=28% Similarity=0.336 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE---eCCcEEEEecCCCcc
Q 007611 243 AETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ---LDKNVKLLDCPGVVM 319 (596)
Q Consensus 243 ~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~---l~~~i~LiDTPGI~~ 319 (596)
-..|+++|..+-... ...++|+|||.+||||||++|+|++.+++.++..+++|.....+. -+..+.+|||||+..
T Consensus 21 q~~l~~~l~~l~~~~--~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 21 QTKLLELLGKLKEED--VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred HHHHHHHHHhccccc--ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 357888887764432 357899999999999999999999999988888887766554432 256899999999986
Q ss_pred C
Q 007611 320 L 320 (596)
Q Consensus 320 ~ 320 (596)
.
T Consensus 99 ~ 99 (313)
T TIGR00991 99 G 99 (313)
T ss_pred h
Confidence 5
No 73
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.98 E-value=7.5e-10 Score=104.60 Aligned_cols=76 Identities=29% Similarity=0.396 Sum_probs=55.3
Q ss_pred eecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCC----ChHHHHHhhcccccc
Q 007611 267 VIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSG----ENDASIALRNCKRIE 338 (596)
Q Consensus 267 vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~----~~~~~~~L~~~~~i~ 338 (596)
|+|.||||||||||+|++... .+++.|++|+.+....+ +.++.|+||||+...... .......+.+++.+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 689999999999999999886 78889999988765432 568899999998643111 123334566777666
Q ss_pred ccCCC
Q 007611 339 KLDDP 343 (596)
Q Consensus 339 ~l~D~ 343 (596)
++.|.
T Consensus 80 ~v~d~ 84 (176)
T cd01881 80 HVVDA 84 (176)
T ss_pred EEEec
Confidence 55543
No 74
>PRK11058 GTPase HflX; Provisional
Probab=98.98 E-value=5.4e-10 Score=122.38 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=72.8
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--eC--CcEEEEecCCCccCCCCC--hH---HHHHhhc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--LD--KNVKLLDCPGVVMLKSGE--ND---ASIALRN 333 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l~--~~i~LiDTPGI~~~~~~~--~~---~~~~L~~ 333 (596)
.+|+|||+||||||||+|+|++..+. +++.||+|++..... ++ ..+.|+||||++...+.+ .. ....++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999998875 889999999876533 32 378999999995421111 11 1223466
Q ss_pred cccccccCCCchh--------HHHHHhhC---CcchhhhhhCCCCCC
Q 007611 334 CKRIEKLDDPVGP--------VKEILNRC---PANLLISLYKLPSFD 369 (596)
Q Consensus 334 ~~~i~~l~D~~~~--------v~~iL~~~---~~~~L~~l~ki~~~~ 369 (596)
++.+.++.|...+ +..+|..+ ..+.++++||+|...
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 7777666654321 12334433 356788889998754
No 75
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.97 E-value=5.2e-10 Score=115.99 Aligned_cols=80 Identities=26% Similarity=0.404 Sum_probs=66.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe--------------------CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--------------------DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l--------------------~~~i~LiDTPGI~~~ 320 (596)
..+++||||+||||||||+|+|++..+. ++++|+||.++.+..+ ...+.++|..|++..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4578999999999999999999999975 9999999999876442 236899999999987
Q ss_pred CCC----ChHHHHHhhccccccccC
Q 007611 321 KSG----ENDASIALRNCKRIEKLD 341 (596)
Q Consensus 321 ~~~----~~~~~~~L~~~~~i~~l~ 341 (596)
.+. .+.+...+|.|+.+.++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVV 122 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVV 122 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEE
Confidence 554 356777889888886654
No 76
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.95 E-value=1.2e-09 Score=100.73 Aligned_cols=106 Identities=29% Similarity=0.352 Sum_probs=72.3
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC-----hHHHHHhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE-----NDASIALRNC 334 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~-----~~~~~~L~~~ 334 (596)
++|+++|.||+|||||+|+|++...+.+++.|++|+......+ +..+.++||||+....... ......+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5799999999999999999999988888999999988665432 3478999999987543211 1123345566
Q ss_pred ccccccCCCc---hh-HHHHHh-hCCcchhhhhhCCCCC
Q 007611 335 KRIEKLDDPV---GP-VKEILN-RCPANLLISLYKLPSF 368 (596)
Q Consensus 335 ~~i~~l~D~~---~~-v~~iL~-~~~~~~L~~l~ki~~~ 368 (596)
+.+..+.|+. .. ...++. ....+.++++|++|..
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLL 120 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcC
Confidence 6555554443 11 122333 2345677788888765
No 77
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.94 E-value=1.5e-09 Score=121.86 Aligned_cols=105 Identities=26% Similarity=0.394 Sum_probs=74.1
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC--ChHH-HH-Hh-hc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG--ENDA-SI-AL-RN 333 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~--~~~~-~~-~L-~~ 333 (596)
..+|++||.||||||||+|+|+|.+. .||+.||+|-...++.+ +..+.++|.||+..-... ++.. .. .+ ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 35799999999999999999999996 89999999999888765 567999999999865433 2222 22 22 23
Q ss_pred cccccccCCCch-----hHHHHHhhCCcchhhhhhCCCC
Q 007611 334 CKRIEKLDDPVG-----PVKEILNRCPANLLISLYKLPS 367 (596)
Q Consensus 334 ~~~i~~l~D~~~-----~v~~iL~~~~~~~L~~l~ki~~ 367 (596)
.|.+..+.|... ++.-.|-..+.+.++.+|.+|.
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~ 120 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDE 120 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhh
Confidence 455555556532 2222233455567777787764
No 78
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.92 E-value=2.9e-09 Score=113.76 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=65.1
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---C-----------------CcEEEEecCCCccCCC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---D-----------------KNVKLLDCPGVVMLKS 322 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~-----------------~~i~LiDTPGI~~~~~ 322 (596)
+++||||+||||||||+|+|++..+..++++|+||..+....+ | ..+.++|.||++...+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999997689999999988765332 2 3689999999998643
Q ss_pred C----ChHHHHHhhccccccccCC
Q 007611 323 G----ENDASIALRNCKRIEKLDD 342 (596)
Q Consensus 323 ~----~~~~~~~L~~~~~i~~l~D 342 (596)
. ...+...+++|+.+.++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr 106 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVR 106 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEe
Confidence 2 3567778999998876644
No 79
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.92 E-value=2.7e-09 Score=124.45 Aligned_cols=106 Identities=27% Similarity=0.358 Sum_probs=74.6
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC------ChH-HHHH-
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG------END-ASIA- 330 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~------~~~-~~~~- 330 (596)
.++|++||.||||||||+|+|++.+. .|++.||+|.......+ +..+.++||||+..-... ++. ....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 57899999999999999999999875 79999999998776554 457999999999754221 111 1112
Q ss_pred -hhccccccccCCCchh-----HHHHHhhCCcchhhhhhCCCCC
Q 007611 331 -LRNCKRIEKLDDPVGP-----VKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 331 -L~~~~~i~~l~D~~~~-----v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
...++.+..+.|.... +...+...+.+.++.+|++|..
T Consensus 82 ~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred hccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhh
Confidence 2355665556554321 2223445567888899999864
No 80
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.90 E-value=1.4e-09 Score=114.85 Aligned_cols=78 Identities=26% Similarity=0.326 Sum_probs=59.3
Q ss_pred EEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-------------------------CCcEEEEecCCC
Q 007611 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-------------------------DKNVKLLDCPGV 317 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-------------------------~~~i~LiDTPGI 317 (596)
|||||.||||||||+|+|++... .++++|+||+.+.... + .-.+.|+||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 68999999999999999999885 8999999998866421 1 125899999999
Q ss_pred ccCCCCC----hHHHHHhhccccccccCCC
Q 007611 318 VMLKSGE----NDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 318 ~~~~~~~----~~~~~~L~~~~~i~~l~D~ 343 (596)
+...... ..+...+++|+.+.++.|.
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~ 109 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDA 109 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeC
Confidence 8653222 2345568888888766544
No 81
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.84 E-value=9e-09 Score=115.67 Aligned_cols=63 Identities=25% Similarity=0.299 Sum_probs=50.5
Q ss_pred cccceEEEeecCCCCCcchHHHhhhccccccccCC-CCceeeeEEE-Ee-CCcEEEEecCCCccCC
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANVGAT-PGLTRSMQEV-QL-DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~-PgtTr~~q~v-~l-~~~i~LiDTPGI~~~~ 321 (596)
+..+++|+|||.||||||||||+|++..++.++.. |+||+..... .. +..|.||||||+....
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSA 180 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccc
Confidence 45678999999999999999999999998788775 6766643322 22 5689999999999863
No 82
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.83 E-value=3.3e-09 Score=114.55 Aligned_cols=151 Identities=25% Similarity=0.287 Sum_probs=91.8
Q ss_pred HHHHHHHHhhhhcccc-ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCC---cEEEEecCCCcc
Q 007611 244 ETLIKLLKNYSRSHEI-KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (596)
Q Consensus 244 ~~Ll~lLk~y~~~~~~-k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~ 319 (596)
+.|.+.-+..++-..+ ...-++.|+|+||||||||+|.+++..+ .|.++|+||+..-.++++. ...++|||||..
T Consensus 149 ~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD 227 (620)
T KOG1490|consen 149 EYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILD 227 (620)
T ss_pred HHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccC
Confidence 3444444444433222 3457899999999999999999999986 7999999999988777764 567899999997
Q ss_pred CCCCC--------hHHHHHhhccccccccCCCc----hhHHHHHhh--------CCcchhhhhhCCCCCCC------HHH
Q 007611 320 LKSGE--------NDASIALRNCKRIEKLDDPV----GPVKEILNR--------CPANLLISLYKLPSFDS------VDD 373 (596)
Q Consensus 320 ~~~~~--------~~~~~~L~~~~~i~~l~D~~----~~v~~iL~~--------~~~~~L~~l~ki~~~~~------~~e 373 (596)
....+ -.+...|+.|... +.|.. ..+.+.++. .+++.|+++|++|.+.. ..+
T Consensus 228 ~plEdrN~IEmqsITALAHLraaVLY--fmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ 305 (620)
T KOG1490|consen 228 RPEEDRNIIEMQIITALAHLRSAVLY--FMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQE 305 (620)
T ss_pred cchhhhhHHHHHHHHHHHHhhhhhee--eeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHH
Confidence 63322 1233455555432 22211 112222111 23466778899987541 235
Q ss_pred HHHHHHHHhc-------ccccCCcccHHHHH
Q 007611 374 FLQKVATVRG-------KLKKGGIVDVEAAA 397 (596)
Q Consensus 374 ~L~~la~~~g-------~l~kggi~di~aaa 397 (596)
+++.+....+ .+..-|+.++-..|
T Consensus 306 ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~A 336 (620)
T KOG1490|consen 306 LLQTIIDDGNVKVVQTSCVQEEGVMDVRTTA 336 (620)
T ss_pred HHHHHHhccCceEEEecccchhceeeHHHHH
Confidence 5555544332 12335777765433
No 83
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.82 E-value=7.7e-10 Score=109.58 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=65.2
Q ss_pred EEEeecCCCCCcchHHHhhhcccccccc------------------------------CCCCceeeeEEEEe---CCcEE
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVG------------------------------ATPGLTRSMQEVQL---DKNVK 310 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs------------------------------~~PgtTr~~q~v~l---~~~i~ 310 (596)
+|+|||+||+|||||+|+|+...-+.++ ..+|+|++.....+ +.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999999864322221 12688888765544 56899
Q ss_pred EEecCCCccCCCCChHHHHHhhccccccccCCCchh-------HHHHHhhCCcc-hhhhhhCCCCCC
Q 007611 311 LLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPAN-LLISLYKLPSFD 369 (596)
Q Consensus 311 LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~-------v~~iL~~~~~~-~L~~l~ki~~~~ 369 (596)
|+||||...- .......+..++.+..+.|.... ...++.....+ .++++||+|...
T Consensus 81 liDTpG~~~~---~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQY---TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHH---HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 9999997421 11233345666666666554321 12344444433 455689998753
No 84
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.82 E-value=4e-09 Score=98.29 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=64.6
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccc--cCCCCceeeeEEEE--e--CCcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANV--GATPGLTRSMQEVQ--L--DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~v--s~~PgtTr~~q~v~--l--~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
+.|+|+|.||||||||+|+|++...... ...+++|....... + +..+.|+||||.... .......+++++.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~---~~~~~~~~~~ad~ 77 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF---IKNMLAGAGGIDL 77 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH---HHHHHhhhhcCCE
Confidence 4699999999999999999998643222 23467776654322 2 457899999997422 1222334567776
Q ss_pred ccccCCCch----hHH---HHHhhCCc-chhhhhhCCCCCC
Q 007611 337 IEKLDDPVG----PVK---EILNRCPA-NLLISLYKLPSFD 369 (596)
Q Consensus 337 i~~l~D~~~----~v~---~iL~~~~~-~~L~~l~ki~~~~ 369 (596)
+..+.|... ... .++...+. +.+++.||+|...
T Consensus 78 ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 78 VLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred EEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 666655432 111 22333333 6677788887643
No 85
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.82 E-value=6.5e-09 Score=105.09 Aligned_cols=79 Identities=27% Similarity=0.359 Sum_probs=59.7
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC----hHHHHHhhcccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE----NDASIALRNCKR 336 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~----~~~~~~L~~~~~ 336 (596)
+|+|||.||||||||+|+|++... .++++|++|..+....+ +.++.++||||+....... ......+++++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 689999999999999999999874 68899999987765433 5678999999987543211 223446777777
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+.|.
T Consensus 81 il~V~D~ 87 (233)
T cd01896 81 ILMVLDA 87 (233)
T ss_pred EEEEecC
Confidence 7666554
No 86
>COG1159 Era GTPase [General function prediction only]
Probab=98.80 E-value=3.2e-08 Score=101.79 Aligned_cols=109 Identities=22% Similarity=0.292 Sum_probs=92.3
Q ss_pred CCCCccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHH-HHHHHHHHHh
Q 007611 125 GKNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES-VEKWLKYLRE 203 (596)
Q Consensus 125 ~~~~~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~-l~~Wl~yLr~ 203 (596)
-+++..+.++|.+++++.+..+||||+|+||..+++.....+.+.+.. .+.|+|+++||||+++.+. +.....++..
T Consensus 65 h~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~ 142 (298)
T COG1159 65 HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKK 142 (298)
T ss_pred CCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHh
Confidence 356788999999999999999999999999999999988887777765 3679999999999999887 7888888888
Q ss_pred cCCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhcc
Q 007611 204 ELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (596)
Q Consensus 204 ~~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~ 257 (596)
.+|+..+. ++|+..+.|.+.|++.+..|++.+
T Consensus 143 ~~~f~~iv----------------------piSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 143 LLPFKEIV----------------------PISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred hCCcceEE----------------------EeeccccCCHHHHHHHHHHhCCCC
Confidence 87765443 566777888999999999888754
No 87
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.79 E-value=5.8e-09 Score=96.70 Aligned_cols=101 Identities=27% Similarity=0.384 Sum_probs=65.7
Q ss_pred eecCCCCCcchHHHhhhccccccccCCCCceeeeEEE--Ee-CCcEEEEecCCCccCCCC--ChH-HHHHh--hcccccc
Q 007611 267 VIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKSG--END-ASIAL--RNCKRIE 338 (596)
Q Consensus 267 vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v--~l-~~~i~LiDTPGI~~~~~~--~~~-~~~~L--~~~~~i~ 338 (596)
|+|.+|||||||+|+|++.. ..++.+||+|++.+.. .+ +.++.|+||||+...... +.. ....+ .+++.+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 68999999999999999986 5788899999987543 33 357899999998643221 111 12223 2566655
Q ss_pred ccCCCchh---H--HHHHhhCCcchhhhhhCCCCC
Q 007611 339 KLDDPVGP---V--KEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 339 ~l~D~~~~---v--~~iL~~~~~~~L~~l~ki~~~ 368 (596)
.+.|...+ . ...+.....+.++++|++|..
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 80 NVVDATNLERNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred EEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhc
Confidence 55554332 1 111233456677788888754
No 88
>COG2262 HflX GTPases [General function prediction only]
Probab=98.77 E-value=5.4e-09 Score=111.34 Aligned_cols=111 Identities=21% Similarity=0.293 Sum_probs=78.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEe--CCcEEEEecCCCccCCCCC--hHHHH---Hh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL--DKNVKLLDCPGVVMLKSGE--NDASI---AL 331 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l--~~~i~LiDTPGI~~~~~~~--~~~~~---~L 331 (596)
.-..|++|||+|+|||||+|+|++..+ .+.+..++|-++.. +.+ +.++.|.||-|++..-+.. ..+.. ..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 357899999999999999999998775 56777777666443 233 4689999999999764332 22333 33
Q ss_pred hccccccccCCCchh--------HHHHHhhC---CcchhhhhhCCCCCCCHH
Q 007611 332 RNCKRIEKLDDPVGP--------VKEILNRC---PANLLISLYKLPSFDSVD 372 (596)
Q Consensus 332 ~~~~~i~~l~D~~~~--------v~~iL~~~---~~~~L~~l~ki~~~~~~~ 372 (596)
..++.+.++.|...| +..+|..+ ..+.|.++||+|.+.+..
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 567777777665432 34566654 357888999999876544
No 89
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.76 E-value=8.3e-09 Score=93.85 Aligned_cols=55 Identities=36% Similarity=0.512 Sum_probs=45.9
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEeC---CcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD---KNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l~---~~i~LiDTPGI~ 318 (596)
++|+++|.||+|||||+|+|.+.. ...+..|++|.+... +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 689999999999999999999988 678888899888766 3333 467889999954
No 90
>PRK09866 hypothetical protein; Provisional
Probab=98.76 E-value=1.5e-08 Score=113.74 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=64.4
Q ss_pred CcEEEEecCCCccCCCC--ChHHHHHhhccccccccCCCch-------hHHHHHhhCCc--chhhhhhCCCCCC----CH
Q 007611 307 KNVKLLDCPGVVMLKSG--ENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPA--NLLISLYKLPSFD----SV 371 (596)
Q Consensus 307 ~~i~LiDTPGI~~~~~~--~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~--~~L~~l~ki~~~~----~~ 371 (596)
.+++||||||++.+... +......|..++.|.++.|... .+...|+..++ +.++++||+|... ..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 68999999999976433 2234457888999988877543 22334555553 7888999999763 14
Q ss_pred HHHHHHHHHH--hcccccCCcccHHHHHHHHHHHHH
Q 007611 372 DDFLQKVATV--RGKLKKGGIVDVEAAARIILHDWN 405 (596)
Q Consensus 372 ~e~L~~la~~--~g~l~kggi~di~aaa~~~L~d~~ 405 (596)
+.++..+... ........++++|+.....+..+.
T Consensus 310 E~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LL 345 (741)
T PRK09866 310 DQVRALISGTLMKGCITPQQIFPVSSMWGYLANRAR 345 (741)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Confidence 5556655543 344456678888876665555444
No 91
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.72 E-value=1.7e-08 Score=104.28 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=75.2
Q ss_pred EEEeecCCCCCcchHHHhhhcc-----cccccc------------CCCCceeeeEEEEe---CCcEEEEecCCCccCCCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRC-----HVANVG------------ATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG 323 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~-----kv~~vs------------~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~ 323 (596)
+|+|||++|+|||||+|+|+.. +...|. ...|+|.+.....+ +.++.|+||||.....
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 4899999999999999999731 111222 13477766554433 5689999999986431
Q ss_pred ChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhcc
Q 007611 324 ENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRGK 384 (596)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g~ 384 (596)
......++.++.+..+.|... .+...+.....+.++.+||+|... +.+..+..+....+.
T Consensus 79 -~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 79 -IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred -HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 234556777776666655432 222334445567788899999764 455555555554443
No 92
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.71 E-value=2.1e-08 Score=91.12 Aligned_cols=103 Identities=29% Similarity=0.252 Sum_probs=71.7
Q ss_pred eecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCCh----HHHHHhhcccccc
Q 007611 267 VIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGEN----DASIALRNCKRIE 338 (596)
Q Consensus 267 vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~~----~~~~~L~~~~~i~ 338 (596)
|+|.+|+|||||+|+|.+.....++..+++|........ ...+.|+||||+........ .....++.++.+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 689999999999999999988878889999988776553 45899999999987643322 3334556666665
Q ss_pred ccCCCchh---H----HHHHhhCCcchhhhhhCCCCCC
Q 007611 339 KLDDPVGP---V----KEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 339 ~l~D~~~~---v----~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
.+.|.... . ...+.....+.++++|++|...
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 55443321 1 1122334556778888888654
No 93
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.71 E-value=2.8e-08 Score=97.67 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=64.7
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccC---CCCceeeeEEEEe--CCcEEEEecCCCccCCCCChHHH--HHhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGA---TPGLTRSMQEVQL--DKNVKLLDCPGVVMLKSGENDAS--IALRNC 334 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~---~PgtTr~~q~v~l--~~~i~LiDTPGI~~~~~~~~~~~--~~L~~~ 334 (596)
++|+|+|.+|||||||||+|++..... ... ...+|+....+.. ..++.++||||+........... ..+..+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~ 81 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEY 81 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCc
Confidence 679999999999999999999854221 111 2234555444433 34799999999986533222221 123445
Q ss_pred ccccccCC-Cch----hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 335 KRIEKLDD-PVG----PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 335 ~~i~~l~D-~~~----~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
+.+..+.+ +.. .....+.....+.++++||+|.+.
T Consensus 82 d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 82 DFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 55544432 212 122345555667788889998753
No 94
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.71 E-value=3.1e-08 Score=97.10 Aligned_cols=108 Identities=22% Similarity=0.268 Sum_probs=67.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-C-CcEEEEecCCCccCCCCC--hH---HHHHh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-D-KNVKLLDCPGVVMLKSGE--ND---ASIAL 331 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-~-~~i~LiDTPGI~~~~~~~--~~---~~~~L 331 (596)
..++|+|+|.||||||||+|+|++... .+.+.+++|....... + + ..+.|+||||+....... .. ....+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999999874 4566677776655433 2 2 379999999996532211 11 11124
Q ss_pred hccccccccCCCch--------hHHHHHhhC---CcchhhhhhCCCCCC
Q 007611 332 RNCKRIEKLDDPVG--------PVKEILNRC---PANLLISLYKLPSFD 369 (596)
Q Consensus 332 ~~~~~i~~l~D~~~--------~v~~iL~~~---~~~~L~~l~ki~~~~ 369 (596)
.+++.+..+.|... .+..++..+ ..+.+++.|++|...
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 45555554443221 112344333 346677888888654
No 95
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.70 E-value=1.3e-08 Score=96.98 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=66.0
Q ss_pred EEEeecCCCCCcchHHHhhhcccccccc---------------CCCCceeeeEEEEe---CCcEEEEecCCCccCCCCCh
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVG---------------ATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN 325 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs---------------~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~ 325 (596)
+|+|+|.+|+|||||+|+|++....... ..+|+|.......+ ...+.|+||||+... ..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~---~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF---SS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH---HH
Confidence 4899999999999999999987654322 12455655443332 357899999997632 12
Q ss_pred HHHHHhhccccccccCCCchh----HHH---HHhhCCcchhhhhhCCCCCC
Q 007611 326 DASIALRNCKRIEKLDDPVGP----VKE---ILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 326 ~~~~~L~~~~~i~~l~D~~~~----v~~---iL~~~~~~~L~~l~ki~~~~ 369 (596)
.....++.++.+..+.|.... ... .+.....+.++++|++|...
T Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 78 EVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 344556677777666554321 112 23334557788889998764
No 96
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.69 E-value=1.9e-08 Score=94.72 Aligned_cols=55 Identities=36% Similarity=0.521 Sum_probs=45.8
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCcc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVM 319 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~ 319 (596)
+|+|+|.||||||||+|+|++... .+++.|++|+....... +..+.|+||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 689999999999999999999875 46778899887765443 35799999999854
No 97
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.67 E-value=1.6e-08 Score=96.26 Aligned_cols=115 Identities=21% Similarity=0.254 Sum_probs=67.1
Q ss_pred EEEeecCCCCCcchHHHhhhcccccc--------------ccCCCCceeeeEEEEe--------CCcEEEEecCCCccCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVAN--------------VGATPGLTRSMQEVQL--------DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~--------------vs~~PgtTr~~q~v~l--------~~~i~LiDTPGI~~~~ 321 (596)
+|++||.+|||||||+|+|++...+. +....|+|...+.+.+ ...+.|+||||.....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999999743211 1123466655443322 3357899999997532
Q ss_pred CCChHHHHHhhccccccccCCCchh-----HH--HHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHH
Q 007611 322 SGENDASIALRNCKRIEKLDDPVGP-----VK--EILNRCPANLLISLYKLPSFD-SVDDFLQKVATV 381 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~~-----v~--~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~ 381 (596)
......+++++.+..+.|.... .. ..+.....+.+++.||+|... .....+..++..
T Consensus 82 ---~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~ 146 (179)
T cd01890 82 ---YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDV 146 (179)
T ss_pred ---HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHH
Confidence 2234456677766656554321 11 112223446777889998643 223333444443
No 98
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.67 E-value=2.3e-08 Score=93.82 Aligned_cols=101 Identities=17% Similarity=0.291 Sum_probs=64.3
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe------CCcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL------DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l------~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.|+|+|.+|||||||+|+|++.... ....+++|.+.....+ +..+.|+||||..... ......+..++.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~---~~~~~~~~~~d~i 77 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT---NMRARGASLTDIA 77 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH---HHHHHHHhhcCEE
Confidence 5899999999999999999987753 3455677876543332 3478999999974321 1112234455555
Q ss_pred cccCCCch----h---HHHHHhhCCcchhhhhhCCCCC
Q 007611 338 EKLDDPVG----P---VKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 338 ~~l~D~~~----~---v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
..+.|+.. . ....+.....+.++++|++|..
T Consensus 78 l~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 78 ILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred EEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 54444322 1 1123444566778888998854
No 99
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.64 E-value=3.4e-08 Score=91.55 Aligned_cols=56 Identities=38% Similarity=0.567 Sum_probs=49.3
Q ss_pred EEeecCCCCCcchHHHhhh-ccccccccCCCCceeeeEEEEeCCcEEEEecCCCccC
Q 007611 265 VGVIGLPNVGKSSLINSLK-RCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~-~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
|+|+|.+|+|||||+|+|+ +.....+++++|+|.....+..+.+++++||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence 8999999999999999999 3556678889999998888888889999999998765
No 100
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.64 E-value=9.9e-09 Score=99.90 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=63.3
Q ss_pred eEEEeecCCCCCcchHHHhhhcc------ccccccCCCCceeeeEEEE--e---------------CCcEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC------HVANVGATPGLTRSMQEVQ--L---------------DKNVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~------kv~~vs~~PgtTr~~q~v~--l---------------~~~i~LiDTPGI~~ 319 (596)
++|+|+|.+|||||||+|+|++. ........+|+|....... + +..+.|+||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 1223344567887654321 1 34789999999742
Q ss_pred CCCCChHHHHHhhccccccccCCCch----h---HHHHHhhCCcchhhhhhCCCCCC
Q 007611 320 LKSGENDASIALRNCKRIEKLDDPVG----P---VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~D~~~----~---v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
- .......+..++.+..+.|... . ...++...+.+.++++||+|...
T Consensus 81 ~---~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 L---IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred H---HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 1 1122233344444444444321 1 11233334557778889998763
No 101
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.62 E-value=3.3e-08 Score=98.41 Aligned_cols=60 Identities=27% Similarity=0.375 Sum_probs=41.7
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccC-CCCceeeeEEEEe---CCcEEEEecCCCccCCC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGA-TPGLTRSMQEVQL---DKNVKLLDCPGVVMLKS 322 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~-~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~ 322 (596)
++|.|||.+++||||++|+|+|..+..++. ...+|+..+.... +..|.+|||||+..+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 479999999999999999999999876653 4456666655432 67899999999977644
No 102
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.61 E-value=2.2e-08 Score=109.84 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=67.3
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcccccccc------------------------C------CCCceeeeEEEEe---C
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVG------------------------A------TPGLTRSMQEVQL---D 306 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs------------------------~------~PgtTr~~q~v~l---~ 306 (596)
+..++|+|+|++|+|||||+|+|+...-+.+. + .+|+|++.....+ +
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45789999999999999999999854322111 1 5899999887665 4
Q ss_pred CcEEEEecCCCccCCCCChHHHHHhhccccccccCCCch---------hHHHHHhhCCc-chhhhhhCCCCCC
Q 007611 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG---------PVKEILNRCPA-NLLISLYKLPSFD 369 (596)
Q Consensus 307 ~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~---------~v~~iL~~~~~-~~L~~l~ki~~~~ 369 (596)
.++.|+||||...-. ......+..++.+..+.|... ....++..... +.++++||+|...
T Consensus 84 ~~i~liDtpG~~~~~---~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 84 YYFTIVDCPGHRDFV---KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred eEEEEEECCCcccch---hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 579999999964211 112223445555544433322 11223333443 4566889999754
No 103
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.60 E-value=7.4e-08 Score=94.89 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=67.7
Q ss_pred ceEEEeecCCCCCcchHHHhhhcccc------ccc---------cCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHV------ANV---------GATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG 323 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv------~~v---------s~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~ 323 (596)
.++|++||++|+|||||+++|++... ... ....|+|.+...+.+ +.++.|+||||+..-
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~--- 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY--- 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH---
Confidence 47899999999999999999986410 001 115688887665554 467999999998532
Q ss_pred ChHHHHHhhccccccccCCCch-------hHHHHHhhCCcc-hhhhhhCCCCCC
Q 007611 324 ENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPAN-LLISLYKLPSFD 369 (596)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~-~L~~l~ki~~~~ 369 (596)
...+...+..++.+..+.|... .+..++...+.+ .++.+||+|...
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 2234445666666555554422 122344445554 456789999764
No 104
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.55 E-value=5.1e-08 Score=92.47 Aligned_cols=95 Identities=16% Similarity=0.238 Sum_probs=55.1
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCC-hHHHHHhhccccccccCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGE-NDASIALRNCKRIEKLDD 342 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~-~~~~~~L~~~~~i~~l~D 342 (596)
+|++||.||||||||+|+|.+.... . ..|. .+.+... .++||||........ ......+.+++.+..+.|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~---~v~~~~~-~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQ---AVEFNDK-GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccce---EEEECCC-CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 6999999999999999999987521 1 1222 2222211 269999987653211 122334677777776655
Q ss_pred CchhH----HHHHhh-CCcchhhhhhCCCC
Q 007611 343 PVGPV----KEILNR-CPANLLISLYKLPS 367 (596)
Q Consensus 343 ~~~~v----~~iL~~-~~~~~L~~l~ki~~ 367 (596)
..... ..++.. ...+.++++|++|.
T Consensus 74 ~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl 103 (158)
T PRK15467 74 ANDPESRLPAGLLDIGVSKRQIAVISKTDM 103 (158)
T ss_pred CCCcccccCHHHHhccCCCCeEEEEEcccc
Confidence 43211 122222 23355666777764
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.54 E-value=7.9e-08 Score=88.09 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=65.1
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+++|.||||||||+|.|.+...... .++.|.+.....+.. ...+.|+||||..... ......+.+++.+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~~~~~~~~~d~ii 77 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR---SITPSYYRGAHGAI 77 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH---HHHHHHhcCCCEEE
Confidence 4799999999999999999999886554 445555555555553 2457899999974321 22344567777776
Q ss_pred ccCCCchh-----HHH----HHhhC--CcchhhhhhCCCCC
Q 007611 339 KLDDPVGP-----VKE----ILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 339 ~l~D~~~~-----v~~----iL~~~--~~~~L~~l~ki~~~ 368 (596)
.+.|+..+ +.. ++... ..+.+++.|++|..
T Consensus 78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 78 LVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 66554321 111 22222 24556666777653
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.52 E-value=8.8e-08 Score=91.29 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=65.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
..++|+|+|.+|||||||+|+|.+.....+.++.|.+.....+. +..+.|+||||..... ......+++++.+..+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~-~~~l~l~D~~G~~~~~---~~~~~~~~~~d~~i~v 88 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYE-GYKLNIWDVGGQKTLR---PYWRNYFESTDALIWV 88 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEEC-CEEEEEEECCCCHHHH---HHHHHHhCCCCEEEEE
Confidence 45889999999999999999999887655566656433222221 3467899999975321 1223356677766666
Q ss_pred CCCchh-----H----HHHHhh---CCcchhhhhhCCCCC
Q 007611 341 DDPVGP-----V----KEILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 341 ~D~~~~-----v----~~iL~~---~~~~~L~~l~ki~~~ 368 (596)
.|.... + ..++.. ...+.+++.||+|..
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 554322 1 122221 234666777888754
No 107
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.51 E-value=1.1e-07 Score=88.57 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=62.1
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
+|+++|.||||||||+|+|++.+.. .+..|++|.+... +.++ .++.|+||||.... .......++.++.+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~---~~~~~~~~~~~~~ii 77 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF---RSLIPSYIRDSSVAV 77 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH---HHHHHHHhccCCEEE
Confidence 6999999999999999999988763 3556666655433 3332 25789999995432 112233456666665
Q ss_pred ccCCCch-----hHH----HHHhhCC--cchhhhhhCCCCC
Q 007611 339 KLDDPVG-----PVK----EILNRCP--ANLLISLYKLPSF 368 (596)
Q Consensus 339 ~l~D~~~-----~v~----~iL~~~~--~~~L~~l~ki~~~ 368 (596)
.+-|... .+. .+....+ .+.+++.|++|..
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 78 VVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 5544321 111 2222332 4666777777753
No 108
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.51 E-value=8e-08 Score=90.90 Aligned_cols=32 Identities=38% Similarity=0.474 Sum_probs=27.3
Q ss_pred EEeecCCCCCcchHHHhhhccccccccCCCCc
Q 007611 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGL 296 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pgt 296 (596)
|+|+|..++|||||||+|+|..+++++..|.|
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T 32 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCT 32 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTT
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccc
Confidence 79999999999999999999998887776543
No 109
>CHL00071 tufA elongation factor Tu
Probab=98.49 E-value=1.6e-07 Score=102.60 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=68.8
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcccccc---------------ccCCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVAN---------------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~---------------vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
+..++|+++|++|+|||||+|+|++..... ....+|+|.+.....+ +.++.|+||||...
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~-- 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH--
Confidence 457999999999999999999999752211 1112788888655444 45799999999531
Q ss_pred CCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcc-hhhhhhCCCCCC
Q 007611 322 SGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPAN-LLISLYKLPSFD 369 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~-~L~~l~ki~~~~ 369 (596)
....+...+..++.+..+.|... ....++...+.+ .++.+||+|...
T Consensus 88 -~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 88 -YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred -HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC
Confidence 11223445566666655554432 122334445555 456789999764
No 110
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.49 E-value=3.1e-07 Score=98.66 Aligned_cols=121 Identities=21% Similarity=0.309 Sum_probs=80.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc----ccc-----------cccCCCC---ceeeeEEE-------EeC----CcEEE
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC----HVA-----------NVGATPG---LTRSMQEV-------QLD----KNVKL 311 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~----kv~-----------~vs~~Pg---tTr~~q~v-------~l~----~~i~L 311 (596)
..+.|||||.-|+|||||||++++. .++ .+++.+| +|.++..+ .+. ..+.|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4689999999999999999999999 777 7889999 88876652 233 68999
Q ss_pred EecCCCccCCCC----Ch----------------------HHHHHhh-ccccccccC-CC----------ch---hHHHH
Q 007611 312 LDCPGVVMLKSG----EN----------------------DASIALR-NCKRIEKLD-DP----------VG---PVKEI 350 (596)
Q Consensus 312 iDTPGI~~~~~~----~~----------------------~~~~~L~-~~~~i~~l~-D~----------~~---~v~~i 350 (596)
|||+|+...... .. .+..++. .++....+. |. .. .+..-
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999999765211 11 1344555 322222222 32 11 23345
Q ss_pred HhhCCcchhhhhhCCCCCC-CHHHHHHHHHHH
Q 007611 351 LNRCPANLLISLYKLPSFD-SVDDFLQKVATV 381 (596)
Q Consensus 351 L~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~ 381 (596)
|+..+++.++++|+.+.+. ....+...+...
T Consensus 176 Lk~~~kPfiivlN~~dp~~~et~~l~~~l~ek 207 (492)
T TIGR02836 176 LKELNKPFIILLNSTHPYHPETEALRQELEEK 207 (492)
T ss_pred HHhcCCCEEEEEECcCCCCchhHHHHHHHHHH
Confidence 6777889999999998653 334444444433
No 111
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.47 E-value=1.5e-07 Score=90.09 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=65.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
..+|+++|.+|||||||+|.|++.......++.|.+.. .+.. +..+.|+||||...- .......+.+|+.+..+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~G~~~~---~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYKNIRFLMWDIGGQESL---RSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCeEEEEEECCCCHHH---HHHHHHHhhcCCEEEEE
Confidence 57899999999999999999987765555555555432 2333 457899999997522 11223456777777766
Q ss_pred CCCchh---------HHHHHhhC---CcchhhhhhCCCCC
Q 007611 341 DDPVGP---------VKEILNRC---PANLLISLYKLPSF 368 (596)
Q Consensus 341 ~D~~~~---------v~~iL~~~---~~~~L~~l~ki~~~ 368 (596)
.|.... +..++... ..+.+++.||+|..
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 655321 11222221 24567777888854
No 112
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.47 E-value=1.1e-06 Score=90.61 Aligned_cols=103 Identities=16% Similarity=0.045 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEE
Q 007611 130 NSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVA 209 (596)
Q Consensus 130 ~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~ 209 (596)
...+.+.+.++..+..+|+||+|+|++++.... ..+...+.. .++|+|+|+||+|+++++.+..+...+...++...
T Consensus 64 ~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 140 (270)
T TIGR00436 64 SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKD 140 (270)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCc
Confidence 345567778889999999999999999876543 444455543 37899999999999987766555555544332211
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhcc
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~ 257 (596)
+ .++|+..+.|.+.|++.|..+++..
T Consensus 141 v----------------------~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 141 I----------------------VPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred e----------------------EEEecCCCCCHHHHHHHHHHhCCCC
Confidence 1 1455567889999999998887654
No 113
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.45 E-value=2.2e-07 Score=93.55 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=48.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhcc--ccccccCCCCceeeeEEEEe------CCcEEEEecCCCccCCC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRC--HVANVGATPGLTRSMQEVQL------DKNVKLLDCPGVVMLKS 322 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~--kv~~vs~~PgtTr~~q~v~l------~~~i~LiDTPGI~~~~~ 322 (596)
-..|+|+|.|++|||||+|.|.+. ........+.||+.+..... +..++|+||||+..+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 457999999999999999999998 55444556788887654432 36899999999997743
No 114
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.45 E-value=2.4e-07 Score=105.69 Aligned_cols=98 Identities=24% Similarity=0.375 Sum_probs=64.3
Q ss_pred cCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC--hHH-H--HHhhcccccccc
Q 007611 269 GLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE--NDA-S--IALRNCKRIEKL 340 (596)
Q Consensus 269 G~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~--~~~-~--~~L~~~~~i~~l 340 (596)
|.||||||||+|+|++.+. .+++.||+|.+.....+ +.++.++||||........ +.. . .....++.+..+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999999875 79999999998776443 4579999999997543221 111 1 122345665555
Q ss_pred CCCchh---HH--HHHhhCCcchhhhhhCCCC
Q 007611 341 DDPVGP---VK--EILNRCPANLLISLYKLPS 367 (596)
Q Consensus 341 ~D~~~~---v~--~iL~~~~~~~L~~l~ki~~ 367 (596)
.|.... .. ..+...+.+.+++.||+|.
T Consensus 80 vDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 80 VDASNLERNLYLTLQLLELGIPMILALNLVDE 111 (591)
T ss_pred ecCCcchhhHHHHHHHHhcCCCEEEEEehhHH
Confidence 554321 11 1122234566777788774
No 115
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.44 E-value=5.8e-07 Score=85.23 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=63.0
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
.+|+|||.||||||||+|+|++...... ..+.|.+.....+.++ -.+.|+||||.... .......+++++.+.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---~~~~~~~~~~~d~il 81 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF---RSITRSYYRGAAGAL 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH---HHHHHHHhccCCEEE
Confidence 6899999999999999999998775443 2344555444444443 26889999995422 112334556666666
Q ss_pred ccCCCch-----hHHHHH----hhC--CcchhhhhhCCCCC
Q 007611 339 KLDDPVG-----PVKEIL----NRC--PANLLISLYKLPSF 368 (596)
Q Consensus 339 ~l~D~~~-----~v~~iL----~~~--~~~~L~~l~ki~~~ 368 (596)
.+-|... .+..++ ... ..+.+++.|++|..
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 5555432 122222 111 23566677887754
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.43 E-value=2.8e-07 Score=85.98 Aligned_cols=101 Identities=21% Similarity=0.243 Sum_probs=61.9
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhccccccccCCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~ 343 (596)
+|+|+|.+|||||||+|.|.+.......++.|.+.....+.-...+.++||||..... ......+.+++.+..+.|.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~---~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMR---TVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHH---HHHHHHhccCCEEEEEEEC
Confidence 4899999999999999999998765555555554332222223468999999975321 1223346667766666554
Q ss_pred chh-----H----HHHHhh---CCcchhhhhhCCCC
Q 007611 344 VGP-----V----KEILNR---CPANLLISLYKLPS 367 (596)
Q Consensus 344 ~~~-----v----~~iL~~---~~~~~L~~l~ki~~ 367 (596)
..+ + ..++.. ...+.+++.||.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccc
Confidence 322 1 122221 23456677788775
No 117
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.42 E-value=4.7e-07 Score=87.70 Aligned_cols=102 Identities=22% Similarity=0.226 Sum_probs=65.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
+.++|+++|.+|||||||+|.|.+.....+.++.+.|.. .+.. +.++.++||||..... ......+.+++.+..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~~~~---~~~~~~~~~ad~ii~ 90 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIGNIKFTTFDLGGHQQAR---RLWKDYFPEVNGIVY 90 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEECCEEEEEEECCCCHHHH---HHHHHHhCCCCEEEE
Confidence 468899999999999999999998876554444444332 2222 4578899999986431 122345677777776
Q ss_pred cCCCchh-----H----HHHHhh---CCcchhhhhhCCCC
Q 007611 340 LDDPVGP-----V----KEILNR---CPANLLISLYKLPS 367 (596)
Q Consensus 340 l~D~~~~-----v----~~iL~~---~~~~~L~~l~ki~~ 367 (596)
+.|...+ . ..++.. ...+.+++.||+|.
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 6664332 1 122221 23466777788875
No 118
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.42 E-value=5.1e-07 Score=88.02 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=62.1
Q ss_pred EEEeecCCCCCcchHHHhhhcccccccc---------------CCCCceeeeEEEEe---CCcEEEEecCCCccCCCCCh
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVG---------------ATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN 325 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs---------------~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~ 325 (596)
+|+|||.+|||||||+|+|++..-.... ...|+|.....+.+ ...+.|+||||...-. .
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~---~ 80 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG---G 80 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---H
Confidence 6999999999999999999963211111 12566665544333 4478999999986421 2
Q ss_pred HHHHHhhccccccccCCCch----hHHHHHh---hCCcchhhhhhCCCCC
Q 007611 326 DASIALRNCKRIEKLDDPVG----PVKEILN---RCPANLLISLYKLPSF 368 (596)
Q Consensus 326 ~~~~~L~~~~~i~~l~D~~~----~v~~iL~---~~~~~~L~~l~ki~~~ 368 (596)
.....+++++.+..+.|... ....++. ....+.++++||+|..
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP 130 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 23445666666555544322 1122222 2345677788999864
No 119
>PRK12739 elongation factor G; Reviewed
Probab=98.41 E-value=3.1e-07 Score=106.71 Aligned_cols=119 Identities=14% Similarity=0.233 Sum_probs=78.7
Q ss_pred ceEEEeecCCCCCcchHHHhhhcc-----ccccccC------------CCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRC-----HVANVGA------------TPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~-----kv~~vs~------------~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
-.+|+|||++|+|||||+|+|+.. +...+.. ..|+|.+.....+ +.++.|+||||+..-
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 357999999999999999999742 2222332 5678877655443 568999999998642
Q ss_pred CCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 322 SGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
...+..+++.++.+..+.|... .+...+...+.+.++.+||+|... +.+.++..+....+
T Consensus 87 --~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~ 154 (691)
T PRK12739 87 --TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLG 154 (691)
T ss_pred --HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 1245667777777766665432 122334445567788899999774 44555555544443
No 120
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.39 E-value=4.4e-07 Score=85.92 Aligned_cols=89 Identities=17% Similarity=0.278 Sum_probs=56.8
Q ss_pred HHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChH
Q 007611 247 IKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEND 326 (596)
Q Consensus 247 l~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~ 326 (596)
+.++.++.+. ...++|+|+|.+|||||||+|+|.+.......++.|.+.....+. +..+.++||||.... ...
T Consensus 2 ~~~~~~~~~~---~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~-~~~~~~~D~~G~~~~---~~~ 74 (173)
T cd04155 2 LSLLRKLRKS---SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSD-GFKLNVWDIGGQRAI---RPY 74 (173)
T ss_pred hhHHHHhhcc---CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEEC-CEEEEEEECCCCHHH---HHH
Confidence 3445554443 247899999999999999999999987655666667554332222 457889999996421 111
Q ss_pred HHHHhhccccccccCC
Q 007611 327 ASIALRNCKRIEKLDD 342 (596)
Q Consensus 327 ~~~~L~~~~~i~~l~D 342 (596)
....+.+|+.+..+.|
T Consensus 75 ~~~~~~~~~~ii~v~D 90 (173)
T cd04155 75 WRNYFENTDCLIYVID 90 (173)
T ss_pred HHHHhcCCCEEEEEEe
Confidence 2234455555544444
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.39 E-value=2.2e-07 Score=87.00 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=61.1
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccccCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDD 342 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D 342 (596)
+|+|||.+|||||||+|+|.........++-|.+.. .+.. +..+.|+||||..... ......+..++.+..+.|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTYKNLKFQVWDLGGQTSIR---PYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEECCEEEEEEECCCCHHHH---HHHHHHhcCCCEEEEEEE
Confidence 489999999999999999987664332222222221 1222 3468899999985321 122345667777766665
Q ss_pred Cchh---------HHHHHhh---CCcchhhhhhCCCCCC
Q 007611 343 PVGP---------VKEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 343 ~~~~---------v~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
...+ +..++.. ...+.+++.||+|...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 4321 1122222 1356778889988653
No 122
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.39 E-value=5.5e-07 Score=104.65 Aligned_cols=118 Identities=17% Similarity=0.244 Sum_probs=76.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccc-----cccccC------------CCCceeeeEEEEe---CCcEEEEecCCCccCCC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCH-----VANVGA------------TPGLTRSMQEVQL---DKNVKLLDCPGVVMLKS 322 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~k-----v~~vs~------------~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~ 322 (596)
.+|+|||++|+|||||+|+|+... +..+.+ ..|+|.+...+.+ +.++.|+||||.....
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~- 89 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT- 89 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh-
Confidence 479999999999999999997421 111221 3577776554443 5689999999997532
Q ss_pred CChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 323 GENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 323 ~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
..+...++.++.+..+.|... .+...+.....+.++.+||+|... +.+.++..+....+
T Consensus 90 --~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 156 (689)
T TIGR00484 90 --VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLG 156 (689)
T ss_pred --HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 235556777776665555432 122334445567788899999764 44556665655444
No 123
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.39 E-value=2.2e-07 Score=94.67 Aligned_cols=64 Identities=33% Similarity=0.335 Sum_probs=49.1
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCce----eeeEEEEeCCcEEEEecCCCccCCCCC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT----RSMQEVQLDKNVKLLDCPGVVMLKSGE 324 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtT----r~~q~v~l~~~i~LiDTPGI~~~~~~~ 324 (596)
+.++.|.++|.+|+|||||||+|....+..|+.++-+| +..+.+.. ..++|.||||+......+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhh
Confidence 36789999999999999999999977666666555443 33444443 789999999999875544
No 124
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.37 E-value=4.8e-07 Score=84.28 Aligned_cols=101 Identities=22% Similarity=0.199 Sum_probs=63.0
Q ss_pred EEEeecCCCCCcchHHHhhhccc--cccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhccccccccC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCH--VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLD 341 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~k--v~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~ 341 (596)
+|+|||.+|||||||+|+|++.. ...+.++.|++..... .-+..+.|+||||..... ......+++++.+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE-KGNLSFTAFDMSGQGKYR---GLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE-ECCEEEEEEECCCCHhhH---HHHHHHHccCCEEEEEE
Confidence 48999999999999999999863 3345566665543211 123468899999975321 12234567777777666
Q ss_pred CCchhH---------HHHHhh-----CCcchhhhhhCCCCC
Q 007611 342 DPVGPV---------KEILNR-----CPANLLISLYKLPSF 368 (596)
Q Consensus 342 D~~~~v---------~~iL~~-----~~~~~L~~l~ki~~~ 368 (596)
|..... ..++.. ...+.+++.||+|..
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 654321 122221 234667777888754
No 125
>PRK00089 era GTPase Era; Reviewed
Probab=98.37 E-value=2.7e-06 Score=88.52 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=77.0
Q ss_pred ccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCC-CHHHHHHHHHHHHhcCCe
Q 007611 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV-PRESVEKWLKYLREELPA 207 (596)
Q Consensus 129 ~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLV-p~e~l~~Wl~yLr~~~pt 207 (596)
....+.+....+..+..+|+|++|+|+.++++.....+.+.+.. .++|+++|+||+||+ +++.+..++..+.+.++.
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~ 145 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDF 145 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCC
Confidence 34456677788899999999999999999877665566665543 368999999999999 667777788878765543
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
..+. +.|+..+.|.+.|++.|..+.+.
T Consensus 146 ~~i~----------------------~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 146 AEIV----------------------PISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CeEE----------------------EecCCCCCCHHHHHHHHHHhCCC
Confidence 2221 34455677888888888877654
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.37 E-value=5.7e-07 Score=83.80 Aligned_cols=101 Identities=23% Similarity=0.205 Sum_probs=63.9
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhccccccccCCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~ 343 (596)
+|+|+|.+|||||||+|+|++.......++.|++.....+. +..+.++||||..... ......+..++.+..+-|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~---~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYK-NVSFTVWDVGGQDKIR---PLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEEC-CEEEEEEECCCChhhH---HHHHHHhccCCEEEEEEEC
Confidence 48999999999999999999987555555556554433221 4578999999975431 1223455667766666665
Q ss_pred chh-----HHH----HHhh---CCcchhhhhhCCCCC
Q 007611 344 VGP-----VKE----ILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 344 ~~~-----v~~----iL~~---~~~~~L~~l~ki~~~ 368 (596)
..+ +.. ++.. ...+.+++.||+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 432 221 2221 123556667887754
No 127
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.36 E-value=4.8e-07 Score=89.11 Aligned_cols=105 Identities=23% Similarity=0.346 Sum_probs=62.4
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeCC---cEEEEecCCCccCCCC-ChH----HHHHhh
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSG-END----ASIALR 332 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~~---~i~LiDTPGI~~~~~~-~~~----~~~~L~ 332 (596)
++|+|||.||||||||||.+++...... ..|.++... ..+.++. .+.|+||||....... ... ....+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 3699999999999999999998764322 244443222 2233333 4679999998532111 111 234567
Q ss_pred ccccccccCCCchh-----HH----HHHhh-----CCcchhhhhhCCCCC
Q 007611 333 NCKRIEKLDDPVGP-----VK----EILNR-----CPANLLISLYKLPSF 368 (596)
Q Consensus 333 ~~~~i~~l~D~~~~-----v~----~iL~~-----~~~~~L~~l~ki~~~ 368 (596)
+++.+..+-|...+ +. .++.. -..+.+++.||+|..
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 78877766555432 22 22222 123667778888864
No 128
>PRK00007 elongation factor G; Reviewed
Probab=98.35 E-value=5.8e-07 Score=104.52 Aligned_cols=118 Identities=16% Similarity=0.254 Sum_probs=76.8
Q ss_pred eEEEeecCCCCCcchHHHhhhc---c--cccccc------------CCCCceeeeEEEEe---CCcEEEEecCCCccCCC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKR---C--HVANVG------------ATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKS 322 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~---~--kv~~vs------------~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~ 322 (596)
.+|+|||++|+|||||+|+|+. . .+..+. ..+|+|.+...+.+ +.++.||||||....
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-- 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-- 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH--
Confidence 5799999999999999999973 2 111233 25678877654443 668999999998642
Q ss_pred CChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 323 GENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 323 ~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
...+..+++.++.+..+.|... .+...+...+.+.++.+||+|... +...++..+....+
T Consensus 89 -~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~ 156 (693)
T PRK00007 89 -TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLG 156 (693)
T ss_pred -HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 1235566777766655555422 233345555667788899999764 44455555544433
No 129
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.35 E-value=1.9e-07 Score=93.57 Aligned_cols=82 Identities=26% Similarity=0.351 Sum_probs=62.9
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC----hHHHHHhhcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE----NDASIALRNC 334 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~----~~~~~~L~~~ 334 (596)
..+|++||+|.||||||+..|+..+. ..+.+.+||-....+.+ +..|.++|.|||+...+.. ..+-.+.+.+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 47899999999999999999998874 67788899988776554 6789999999999875432 2233344566
Q ss_pred ccccccCCCc
Q 007611 335 KRIEKLDDPV 344 (596)
Q Consensus 335 ~~i~~l~D~~ 344 (596)
+.+..+.|+.
T Consensus 141 DlilMvLDat 150 (364)
T KOG1486|consen 141 DLILMVLDAT 150 (364)
T ss_pred cEEEEEecCC
Confidence 6666666654
No 130
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.34 E-value=4.8e-07 Score=85.01 Aligned_cols=102 Identities=21% Similarity=0.230 Sum_probs=59.5
Q ss_pred EEEeecCCCCCcchHHHhhhccccc---cccCCCCceeeeE--EEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVA---NVGATPGLTRSMQ--EVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~---~vs~~PgtTr~~q--~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
+|+|||.+|||||||+|.|++.... .....+.+|.... .+.. +..+.|+||||...-. ......+..++.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR---SLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH---HHHHHHhCCCCEE
Confidence 4899999999999999999875421 1111223333322 2333 4578999999975321 1233456677766
Q ss_pred cccCCCchh-----H----HHHHhh---CCcchhhhhhCCCCC
Q 007611 338 EKLDDPVGP-----V----KEILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 338 ~~l~D~~~~-----v----~~iL~~---~~~~~L~~l~ki~~~ 368 (596)
..+.|...+ + ..++.. ...+.+++.||+|..
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 666554322 1 112221 134667777888754
No 131
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.34 E-value=2.7e-06 Score=82.66 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHHHhcCC---
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYLREELP--- 206 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e---~l~~Wl~yLr~~~p--- 206 (596)
..|.++....+..+|++|+|+||++++......+...+... +.|+|+|+||+|++..+ .++.|...|-+.++
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred cceeecccceecccccceeeeeccccccccccccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 45888999999999999999999998766555555555543 78899999999999332 34455534422221
Q ss_pred --eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 207 --AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 207 --tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+++. +.|+..+.|.+.|++.|.++.+
T Consensus 159 ~~~~~vi----------------------~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPVI----------------------PISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEEE----------------------EEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEE----------------------EEecCCCCCHHHHHHHHHHhCc
Confidence 12222 4556678899999999988765
No 132
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.33 E-value=9.3e-07 Score=89.72 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=67.2
Q ss_pred EEEeecCCCCCcchHHHhhhccccc--cccC---------------CCCceeeeEEEE--e-CCcEEEEecCCCccCCCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVA--NVGA---------------TPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSG 323 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~--~vs~---------------~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~ 323 (596)
+|+|+|++|+|||||+|+|+...-+ ..+. .-|+|....... . +.++.|+||||.....
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 4899999999999999999864211 1111 112333222222 2 4589999999996431
Q ss_pred ChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHH
Q 007611 324 ENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVA 379 (596)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la 379 (596)
......++.++.+..+.|... .+..++...+.+.++.+||+|... +.++.+..+.
T Consensus 79 -~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~ 141 (237)
T cd04168 79 -AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIK 141 (237)
T ss_pred -HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHH
Confidence 233445666665554444322 233445556677888889998753 4445544443
No 133
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.33 E-value=6.3e-07 Score=91.32 Aligned_cols=61 Identities=30% Similarity=0.379 Sum_probs=52.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cc-cCCCCceeeeEEEEeCCcEEEEecCCCccCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NV-GATPGLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~v-s~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~ 321 (596)
+...++++|.+|||||||||.|.+.+.. -+ .++||-|+..+.++++...+++|.||+.+..
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAG 197 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCccccc
Confidence 4578999999999999999999988743 33 3489999999999999999999999976553
No 134
>PLN03118 Rab family protein; Provisional
Probab=98.33 E-value=8.6e-07 Score=87.66 Aligned_cols=81 Identities=25% Similarity=0.321 Sum_probs=56.9
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
+..++|+|||.+|||||||+|+|++.......++.|++.....+.++. .+.|+||||...... .....+++++.
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~---~~~~~~~~~d~ 88 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT---LTSSYYRNAQG 88 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH---HHHHHHhcCCE
Confidence 456899999999999999999999887666666666665555555543 678999999754321 12345666666
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+-|.
T Consensus 89 ~vlv~D~ 95 (211)
T PLN03118 89 IILVYDV 95 (211)
T ss_pred EEEEEEC
Confidence 6555443
No 135
>PRK15494 era GTPase Era; Provisional
Probab=98.32 E-value=3.2e-06 Score=90.28 Aligned_cols=104 Identities=13% Similarity=0.231 Sum_probs=73.3
Q ss_pred ccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeE
Q 007611 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAV 208 (596)
Q Consensus 129 ~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv 208 (596)
....+.|.+..+..+..||+||+|+|+.+++......+.+.+.. .+.|.|+|+||+||.+. .+.....++...++..
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~ 191 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDS 191 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCc
Confidence 44567788889999999999999999998876554444444443 25788999999999765 3455556665554432
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhcc
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~ 257 (596)
.+. ++|+..+.|.+.|++.|..+++.+
T Consensus 192 ~i~----------------------~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 192 LLF----------------------PISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred EEE----------------------EEeccCccCHHHHHHHHHHhCCCC
Confidence 221 345566778888888888877653
No 136
>PLN03127 Elongation factor Tu; Provisional
Probab=98.31 E-value=1.3e-06 Score=96.46 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=68.7
Q ss_pred cccceEEEeecCCCCCcchHHHhhhcc------cccc---------ccCCCCceeeeEEEEe---CCcEEEEecCCCccC
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRC------HVAN---------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~------kv~~---------vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~ 320 (596)
.+..++|+++|++|+|||||+++|++. .... ....+|+|++...+.+ +.++.|+||||+..-
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 356899999999999999999999732 1111 1123799998776655 458999999998531
Q ss_pred CCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcch-hhhhhCCCCCC
Q 007611 321 KSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANL-LISLYKLPSFD 369 (596)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~-L~~l~ki~~~~ 369 (596)
...+...+..++.+..+.|... ....++...+.+. ++.+||+|...
T Consensus 138 ---~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 ---VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred ---HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 1222233344555555544321 1223444455564 56789999764
No 137
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.31 E-value=5.8e-07 Score=83.90 Aligned_cols=102 Identities=17% Similarity=0.122 Sum_probs=60.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
.++|+++|.||||||||+|++++... +...++++... ..+.++ ..+.|+||||..... ......+++++.
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~~~ 76 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS---AMREQYMRTGEG 76 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh---HHHHHHHhhCCE
Confidence 37899999999999999999998653 44445554432 122233 257889999975332 122344566666
Q ss_pred ccccCCCchh-----HH----HHHhh---CCcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~---~~~~~L~~l~ki~~~ 368 (596)
+..+-|.... +. .++.. ...+.+++.||+|..
T Consensus 77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 77 FLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 5555443221 11 12221 133566677887753
No 138
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.31 E-value=1e-06 Score=82.18 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=52.7
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|+|.||||||||+|+|++..... ..+++|++.....+.++ -++.|+||||..... ......+++++.+.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~~~~~~~~~d~~i 77 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR---TLTSSYYRGAQGVI 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhh---hhhHHHhCCCCEEE
Confidence 479999999999999999999876533 55666766655555443 357899999964321 11223456666665
Q ss_pred ccCCC
Q 007611 339 KLDDP 343 (596)
Q Consensus 339 ~l~D~ 343 (596)
.+.|.
T Consensus 78 ~v~d~ 82 (161)
T cd01863 78 LVYDV 82 (161)
T ss_pred EEEEC
Confidence 55443
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.30 E-value=1.8e-07 Score=85.83 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=54.7
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCC-ChHHHHHhhccccccccCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSG-ENDASIALRNCKRIEKLDD 342 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~-~~~~~~~L~~~~~i~~l~D 342 (596)
+|+|||.||||||||+|+|++.... .+. |.. +.+. ..++||||....... -......+++++.+..+.|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~~---~~~~--~~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQA---VEYN--DGAIDTPGEYVENRRLYSALIVTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-cee---EEEc--CeeecCchhhhhhHHHHHHHHHHhhcCCEEEEEec
Confidence 6999999999999999999987642 111 221 2222 268999998321000 0111123567776655544
Q ss_pred C---chh-HHHHHhhCCcchhhhhhCCCCC
Q 007611 343 P---VGP-VKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 343 ~---~~~-v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
. ... ...++..+..+.+++.||+|..
T Consensus 72 ~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 72 ATDPESRFPPGFASIFVKPVIGLVTKIDLA 101 (142)
T ss_pred CCCCCcCCChhHHHhccCCeEEEEEeeccC
Confidence 3 211 1223333344667777888864
No 140
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.30 E-value=9.7e-07 Score=90.86 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=61.0
Q ss_pred EEEeecCCCCCcchHHHhhhccccc--cccC-CCCc--------------eeeeEE--EEe-CCcEEEEecCCCccCCCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVA--NVGA-TPGL--------------TRSMQE--VQL-DKNVKLLDCPGVVMLKSG 323 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~--~vs~-~Pgt--------------Tr~~q~--v~l-~~~i~LiDTPGI~~~~~~ 323 (596)
+|+|||.+|+|||||+|+|++..-+ ..+. ..|+ |..... +.. +.++.|+||||....
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 4899999999999999999853211 1111 1222 222221 222 457899999998632
Q ss_pred ChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 324 ENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
......+++.++.+..+.|+.. .+...+.....+.++.+|++|...
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence 1234556777776665655432 122233444556777888888653
No 141
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.30 E-value=1.1e-06 Score=85.08 Aligned_cols=104 Identities=22% Similarity=0.192 Sum_probs=63.1
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.++|++||.+|||||||||+|.........++.|.+.....+.. +..+.|+||||..... ......+++++.+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---~~~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR---PLWKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH---HHHHHHhccCCEE
Confidence 57899999999999999999987664322233343333333332 2368899999974221 1223346677777
Q ss_pred cccCCCchh-----HH----HHHhh---CCcchhhhhhCCCCC
Q 007611 338 EKLDDPVGP-----VK----EILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 338 ~~l~D~~~~-----v~----~iL~~---~~~~~L~~l~ki~~~ 368 (596)
.++.|...+ +. .++.. ...+.+++.||+|..
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 766664332 11 12221 234677778888754
No 142
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.29 E-value=2.4e-06 Score=80.32 Aligned_cols=103 Identities=22% Similarity=0.242 Sum_probs=59.0
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|||.||||||||+|+|.+...... .++.|.+-....+.++ -.+.++||||..... ......+++|+.+.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---~~~~~~~~~~d~~i 77 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ---SLGVAFYRGADCCV 77 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH---hHHHHHhcCCCEEE
Confidence 4799999999999999999998764221 1222332222233332 246789999964221 12234566677666
Q ss_pred ccCCCchh-----H----HHHHhhC------CcchhhhhhCCCCC
Q 007611 339 KLDDPVGP-----V----KEILNRC------PANLLISLYKLPSF 368 (596)
Q Consensus 339 ~l~D~~~~-----v----~~iL~~~------~~~~L~~l~ki~~~ 368 (596)
.+-|...+ + ..++..+ ..+.+++.||+|..
T Consensus 78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 78 LVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 55444321 1 1233333 23556667887765
No 143
>PRK12735 elongation factor Tu; Reviewed
Probab=98.29 E-value=9.9e-07 Score=96.06 Aligned_cols=107 Identities=17% Similarity=0.258 Sum_probs=65.7
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcc-------cccc--------ccCCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRC-------HVAN--------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~-------kv~~--------vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
+..++|+++|++|+|||||+|+|++. +... .....|+|.+...+.+ +.++.|+||||...-
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f- 88 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY- 88 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH-
Confidence 46799999999999999999999862 1100 0114688888765554 457999999997421
Q ss_pred CCChHHHHHhhccccccccCCCc----hhH---HHHHhhCCcchh-hhhhCCCCCC
Q 007611 322 SGENDASIALRNCKRIEKLDDPV----GPV---KEILNRCPANLL-ISLYKLPSFD 369 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~----~~v---~~iL~~~~~~~L-~~l~ki~~~~ 369 (596)
...+...+..++.+..+.|.. ... ..++...+.+.+ +.+||+|...
T Consensus 89 --~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 89 --VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred --HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 122333444555544443332 121 223333445555 4689999764
No 144
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.28 E-value=7.3e-07 Score=82.99 Aligned_cols=102 Identities=21% Similarity=0.085 Sum_probs=58.8
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++|+++|.||||||||+|+|+..... ....+++... ..+.++ ..+.|+||||..... ......+++++.+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---~~~~~~~~~~~~~ 75 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA---AIRDNYHRSGEGF 75 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh---HHHHHHhhcCCEE
Confidence 37999999999999999999976532 2333433321 112233 257889999975432 2233355555544
Q ss_pred cccCC---Cch------hHHHHHhh---CCcchhhhhhCCCCCC
Q 007611 338 EKLDD---PVG------PVKEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 338 ~~l~D---~~~------~v~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
..+-| +.. ....++.. ...+.+++.||+|...
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 76 LLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 43322 221 11223332 3456777888888653
No 145
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.28 E-value=6.3e-07 Score=103.21 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=65.3
Q ss_pred ccccceEEEeecCCCCCcchHHHhhhccccccc----------cCCCCcee----------------------eeEEEEe
Q 007611 258 EIKKSITVGVIGLPNVGKSSLINSLKRCHVANV----------GATPGLTR----------------------SMQEVQL 305 (596)
Q Consensus 258 ~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~v----------s~~PgtTr----------------------~~q~v~l 305 (596)
..+..++|+|||+||+|||||+|.|+...-+.+ +..+|+|| +.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 334578999999999999999999997543333 22345544 3322222
Q ss_pred ---CCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCC-cchhhhhhCCCCCC
Q 007611 306 ---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCP-ANLLISLYKLPSFD 369 (596)
Q Consensus 306 ---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~-~~~L~~l~ki~~~~ 369 (596)
+.++.|+||||...- .......+..++.+..+.|... ....++.... ++.++++||+|...
T Consensus 100 ~~~~~~~~liDtPG~~~f---~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQY---TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred ccCCceEEEEECCChHHH---HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 457999999996421 1122234555555555544321 1233444444 34566889999764
No 146
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.27 E-value=4.5e-07 Score=84.92 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=56.6
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
+|+|+|.||||||||+|+|.+.... ...+.++.+. ..+.++ ..+.++||||..... ......+++++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---~~~~~~~~~~~~~i 76 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS---AMRDQYMRTGEGFL 76 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccch---HHHHHHHhhCCEEE
Confidence 6999999999999999999987642 2223333321 222333 256789999975432 12233455565554
Q ss_pred ccCCCchh-----HH----HHHhh---CCcchhhhhhCCCCC
Q 007611 339 KLDDPVGP-----VK----EILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 339 ~l~D~~~~-----v~----~iL~~---~~~~~L~~l~ki~~~ 368 (596)
.+-|...+ +. .+... ...+.+++.||+|..
T Consensus 77 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 77 LVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 44433221 11 12221 133566677887753
No 147
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.27 E-value=2.5e-06 Score=88.12 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=60.3
Q ss_pred EEEeecCCCCCcchHHHhhhccc--cccccCCC-----Cc--------------eeeeEE--EEe-CCcEEEEecCCCcc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCH--VANVGATP-----GL--------------TRSMQE--VQL-DKNVKLLDCPGVVM 319 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~k--v~~vs~~P-----gt--------------Tr~~q~--v~l-~~~i~LiDTPGI~~ 319 (596)
+|+|||++|+|||||+|+|+... +...+... |+ |..... +.. +..+.|+||||...
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 59999999999999999998532 11111111 21 111111 222 56799999999753
Q ss_pred CCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCC
Q 007611 320 LKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
.. ......++.++.+..+.|... .+..++...+.+.++.+||+|..
T Consensus 84 f~---~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 84 FS---EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred HH---HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 21 234556777776665555432 12223333455677778898854
No 148
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.26 E-value=1.7e-06 Score=80.88 Aligned_cols=78 Identities=23% Similarity=0.255 Sum_probs=52.3
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|+|.+|||||||+|+|++..... ..+++|.+.....+.++ -.+.|+||||-.... ......+++++.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~---~~~~~~~~~~~~~i 78 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYR---SLAPMYYRGAAAAI 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHH---HHHHHHhccCCEEE
Confidence 689999999999999999999987644 55566654444444443 357899999953221 11234556666665
Q ss_pred ccCCC
Q 007611 339 KLDDP 343 (596)
Q Consensus 339 ~l~D~ 343 (596)
.+.|+
T Consensus 79 ~v~d~ 83 (163)
T cd01860 79 VVYDI 83 (163)
T ss_pred EEEEC
Confidence 55544
No 149
>PRK00049 elongation factor Tu; Reviewed
Probab=98.25 E-value=1.1e-06 Score=95.61 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=69.2
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcccc------ccc---------cCCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHV------ANV---------GATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv------~~v---------s~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
+..++|+++|++|+|||||+++|++... ... .-.+|+|.+...+.+ +.++.|+||||+..-
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f- 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY- 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH-
Confidence 4679999999999999999999996310 011 115789988776555 457999999998421
Q ss_pred CCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchh-hhhhCCCCCC
Q 007611 322 SGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLL-ISLYKLPSFD 369 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L-~~l~ki~~~~ 369 (596)
...+...+..++.+..+.|... ....++...+.+.+ +.+||+|...
T Consensus 89 --~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 --VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred --HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 1222334556666655554432 12234444555655 4789999764
No 150
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.22 E-value=1.2e-05 Score=74.07 Aligned_cols=95 Identities=25% Similarity=0.358 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCC-CHHHHHHHHHHHHhcCCeEEEEcc
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV-PRESVEKWLKYLREELPAVAFKCS 213 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLV-p~e~l~~Wl~yLr~~~ptv~f~~~ 213 (596)
+.......+..+|+|++|+|+.+|+......+.+.+... +.|+++|+||+|+. ....+..|+.++...++...+.
T Consensus 72 ~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-- 147 (168)
T cd04163 72 MVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIF-- 147 (168)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceE--
Confidence 445566778999999999999999766666666666543 58999999999999 5677888998888776432221
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..++..+.|.+.|++.|..+
T Consensus 148 --------------------~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 148 --------------------PISALKGENVDELLEEIVKY 167 (168)
T ss_pred --------------------EEEeccCCChHHHHHHHHhh
Confidence 23345567888888888653
No 151
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.22 E-value=2.2e-06 Score=80.42 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=39.8
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~ 319 (596)
.+|+|||.||||||||+|+|.+..... ..++.|++-....+..+. .+.|+||||...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 64 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 689999999999999999999877432 233334333333344432 578999999753
No 152
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.21 E-value=2.2e-06 Score=92.07 Aligned_cols=62 Identities=29% Similarity=0.336 Sum_probs=41.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc-----ccccccCCCCceeeeEEEEeC--CcEEEEecCCCccCCCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC-----HVANVGATPGLTRSMQEVQLD--KNVKLLDCPGVVMLKSG 323 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~-----kv~~vs~~PgtTr~~q~v~l~--~~i~LiDTPGI~~~~~~ 323 (596)
..+.|||+|-+|+|||||||+|.|- ..+.||.+ .||..+..+.-. .+++|.|.||+..+...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~ 102 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNFP 102 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS--
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCCC
Confidence 4689999999999999999999873 34555543 567777766643 58999999999887553
No 153
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.20 E-value=3.8e-06 Score=84.54 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=63.4
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc-cccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k-v~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
..+..|+|||.||+|||||+|+|.+.. ...++...|+.. . ...-+.++.++||||.+ ..+...+..++.+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~-i-~~~~~~~i~~vDtPg~~------~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPIT-V-VTGKKRRLTFIECPNDI------NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEE-E-EecCCceEEEEeCCchH------HHHHHHHHhcCEEE
Confidence 457889999999999999999999752 233444555321 1 11236689999999865 22333456666666
Q ss_pred ccCCCch----h---HHHHHhhCCcch-hhhhhCCCCCCC
Q 007611 339 KLDDPVG----P---VKEILNRCPANL-LISLYKLPSFDS 370 (596)
Q Consensus 339 ~l~D~~~----~---v~~iL~~~~~~~-L~~l~ki~~~~~ 370 (596)
.+.|... . +..++...+.+. +.++|++|.+..
T Consensus 109 lviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 109 LLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred EEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCc
Confidence 5555432 1 222333333343 447899987643
No 154
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.20 E-value=6.8e-07 Score=82.69 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=61.9
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
+|+|+|.||||||||+|+|++.. .++..+.+|.+... +..+ ..+.++||||..... ......+..++.+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~~~~~~~~~~~~i 75 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS---AMRDLYIRQGDGFI 75 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH---HHHHHHHhcCCEEE
Confidence 48999999999999999999876 34555555554333 2333 357899999976421 12234556666655
Q ss_pred ccCCCchh-----H----HHHHhhC---CcchhhhhhCCCCCC
Q 007611 339 KLDDPVGP-----V----KEILNRC---PANLLISLYKLPSFD 369 (596)
Q Consensus 339 ~l~D~~~~-----v----~~iL~~~---~~~~L~~l~ki~~~~ 369 (596)
.+-|...+ + ..++... ..+.+++.|++|...
T Consensus 76 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 76 LVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 55443221 1 1222222 356777788887653
No 155
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.19 E-value=1.1e-06 Score=83.93 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=37.0
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEe---CCcEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQL---DKNVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l---~~~i~LiDTPGI~~ 319 (596)
.+|+|+|.||||||||+|+|++... +...+.++.. ...+.+ ...+.|+||||...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 61 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE 61 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh
Confidence 5799999999999999999998763 2323333321 111222 23578999999753
No 156
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.17 E-value=2.9e-06 Score=79.07 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=47.6
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCce--eeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtT--r~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++|+|+|.||||||||+|+|.+.... ....|.++ .....+.++. .+.|+||||..... ......+++++.+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---~~~~~~~~~~d~~ 76 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR---SITSSYYRGAVGA 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH---HHHHHHhCCCCEE
Confidence 47999999999999999999987752 22222222 2233344432 67899999954221 1223345666666
Q ss_pred cccCCC
Q 007611 338 EKLDDP 343 (596)
Q Consensus 338 ~~l~D~ 343 (596)
..+-|+
T Consensus 77 ilv~d~ 82 (164)
T smart00175 77 LLVYDI 82 (164)
T ss_pred EEEEEC
Confidence 555443
No 157
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.17 E-value=1.1e-05 Score=75.69 Aligned_cols=99 Identities=23% Similarity=0.314 Sum_probs=76.3
Q ss_pred CCCccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCC-CHHHHHHHHHHHHhc
Q 007611 126 KNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV-PRESVEKWLKYLREE 204 (596)
Q Consensus 126 ~~~~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLV-p~e~l~~Wl~yLr~~ 204 (596)
...+...+.||+.|-.+..+||+|++|.||-+|.+..+|.|...+ ++|+|=|+||+||. ..+.++.-.++|+..
T Consensus 44 PGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a 118 (143)
T PF10662_consen 44 PGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNA 118 (143)
T ss_pred ChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHc
Confidence 334666788999999999999999999999999999999988775 58999999999999 444555544555544
Q ss_pred CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 205 ~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
.-.-.| .+|+..+.|+++|.++|++
T Consensus 119 G~~~if-----------------------~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 119 GVKEIF-----------------------EVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred CCCCeE-----------------------EEECCCCcCHHHHHHHHhC
Confidence 321123 3455678899999998863
No 158
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.16 E-value=3.7e-06 Score=98.36 Aligned_cols=115 Identities=17% Similarity=0.297 Sum_probs=73.0
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
.++..|+|+|++|+|||||+++|++..+. .+..+|+|.+...+.+ +..|.|+||||..... ......+..++.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~---~m~~rga~~aDi 363 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT---AMRARGAQVTDI 363 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch---hHHHhhhhhCCE
Confidence 46889999999999999999999987763 5567888887665443 4679999999975331 112223444444
Q ss_pred ccccCCCc---hh----HHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHH
Q 007611 337 IEKLDDPV---GP----VKEILNRCPANLLISLYKLPSFD-SVDDFLQKV 378 (596)
Q Consensus 337 i~~l~D~~---~~----v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~l 378 (596)
+..+.|.. .+ ....+...+.+.++.+|++|... +.+.+...+
T Consensus 364 aILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL 413 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQEL 413 (787)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHH
Confidence 43333221 11 12233334557888889999743 334444333
No 159
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.16 E-value=5.7e-06 Score=77.92 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=58.1
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|||.||||||||++.+.+...... .++.+.+.....+.++ -.+.|+||||-.... ......+++++.+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~~i 77 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ---TMHASYYHKAHACI 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh---hhhHHHhCCCCEEE
Confidence 4799999999999999999987653221 1122222222222333 247799999965321 12234566777666
Q ss_pred ccCCCchh-----HHHH----HhhC-CcchhhhhhCCCC
Q 007611 339 KLDDPVGP-----VKEI----LNRC-PANLLISLYKLPS 367 (596)
Q Consensus 339 ~l~D~~~~-----v~~i----L~~~-~~~~L~~l~ki~~ 367 (596)
.+-|+... +..+ ...+ ..+.+++.|++|.
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 78 LVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccC
Confidence 66554321 1112 1222 3466677788774
No 160
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.16 E-value=2.5e-06 Score=81.16 Aligned_cols=100 Identities=23% Similarity=0.267 Sum_probs=63.9
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccccCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDD 342 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D 342 (596)
+|+++|.+|||||||+|.|++.......++.|.++. .+.. +..+.++||||-.... ......+++|+.+..+.|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~---~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFR---GIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCcHHHH---HHHHHHHcCCCEEEEEEE
Confidence 489999999999999999998754455666676543 2222 4468899999964321 112345677877777666
Q ss_pred Cchh-----HH----HHHhh---CCcchhhhhhCCCCC
Q 007611 343 PVGP-----VK----EILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 343 ~~~~-----v~----~iL~~---~~~~~L~~l~ki~~~ 368 (596)
.... +. .++.. ...+.+++.||+|..
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 4321 11 22222 134667777888754
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.16 E-value=1.9e-05 Score=72.76 Aligned_cols=61 Identities=30% Similarity=0.419 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHH
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESV 194 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l 194 (596)
...++++....+..+|+||+|+|+++++......+.+++... +.|+|+|+||+|+.+....
T Consensus 63 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 63 SKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS--KKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhc--CCCEEEEEECcccCChHHH
Confidence 345667777888999999999999999888887777777653 6999999999999987654
No 162
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.15 E-value=3.6e-06 Score=78.48 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=46.3
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|||.||||||||+|+|++..... ..++.|.+.....+.+ .-.+.|+||||..... ......+++++.+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~~d~~i 77 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL---EVRNEFYKDTQGVL 77 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH---HHHHHHhccCCEEE
Confidence 479999999999999999999877422 2222222222222333 2367899999974321 11223445555554
Q ss_pred ccCCC
Q 007611 339 KLDDP 343 (596)
Q Consensus 339 ~l~D~ 343 (596)
.+-|+
T Consensus 78 lv~D~ 82 (168)
T cd04119 78 LVYDV 82 (168)
T ss_pred EEEEC
Confidence 44443
No 163
>PRK09866 hypothetical protein; Provisional
Probab=98.15 E-value=1.4e-05 Score=90.29 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC-----HHHHHHHHHH-HHh-cCCe
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP-----RESVEKWLKY-LRE-ELPA 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp-----~e~l~~Wl~y-Lr~-~~pt 207 (596)
+.+.+.+.+..||+||+|+|+..+++.....+.+.+...+.+.|+|+|+||+|++. .+.+..++.. |.. .+++
T Consensus 248 L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f 327 (741)
T PRK09866 248 LQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITP 327 (741)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCC
Confidence 44445568999999999999999887777778888776532359999999999986 4455555542 222 2222
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.. ..++|+..+.|++.|+..|.++.+
T Consensus 328 ~e----------------------IfPVSAlkG~nid~LLdeI~~~~~ 353 (741)
T PRK09866 328 QQ----------------------IFPVSSMWGYLANRARHELANNGK 353 (741)
T ss_pred ce----------------------EEEEeCCCCCCHHHHHHHHHhCCC
Confidence 11 125667788999999999987543
No 164
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.14 E-value=3.5e-06 Score=81.95 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=56.7
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCce-ee--eEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT-RS--MQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtT-r~--~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
++|+|||.+|||||||+|.|.+.... ++..+.++ .. ...+.++ -++.|+||||-.... ......+++++.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~ad~ 76 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR---SVTHAYYRDAHA 76 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH---HhhHHHccCCCE
Confidence 36999999999999999999987642 22222222 12 2223333 267899999953221 112234555665
Q ss_pred ccccCCCchh-----H----HHHHhhC--CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----V----KEILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v----~~iL~~~--~~~~L~~l~ki~~~ 368 (596)
+..+-|.... + ..+.... ..+.+++.|++|..
T Consensus 77 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 77 LLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 5555443221 1 1222222 23556666887753
No 165
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.14 E-value=4.2e-06 Score=95.36 Aligned_cols=111 Identities=18% Similarity=0.286 Sum_probs=69.4
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-CC-cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DK-NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-~~-~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
.++..|+|+|++|+|||||+|+|++..++ .+..+|+|.+...+. + +. .+.|+||||...... .....+..++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~---~r~rga~~aD 160 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS---MRARGAKVTD 160 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchhh---HHHhhhccCC
Confidence 36789999999999999999999988764 455678888765433 3 33 799999999753311 1112234444
Q ss_pred cccccCCCc----hhH---HHHHhhCCcchhhhhhCCCCCC-CHHHH
Q 007611 336 RIEKLDDPV----GPV---KEILNRCPANLLISLYKLPSFD-SVDDF 374 (596)
Q Consensus 336 ~i~~l~D~~----~~v---~~iL~~~~~~~L~~l~ki~~~~-~~~e~ 374 (596)
.+..+.|.. ... ...+.....+.++.+||+|... +.+.+
T Consensus 161 iaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v 207 (587)
T TIGR00487 161 IVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRV 207 (587)
T ss_pred EEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHH
Confidence 333333221 111 1223334557788889998653 33333
No 166
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.12 E-value=2.2e-06 Score=81.09 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=37.3
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeC---CcEEEEecCCCccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLD---KNVKLLDCPGVVML 320 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~---~~i~LiDTPGI~~~ 320 (596)
++|++||.||||||||+|++.+.... ..+..++.. ...+.++ ..+.++||||...-
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcccc
Confidence 57999999999999999999976532 222223221 1223333 35688999997643
No 167
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.11 E-value=1.9e-06 Score=83.74 Aligned_cols=105 Identities=19% Similarity=0.275 Sum_probs=66.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc--c----------c-----cCCCCceeeeEEEE-----eCCcEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA--N----------V-----GATPGLTRSMQEVQ-----LDKNVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~--~----------v-----s~~PgtTr~~q~v~-----l~~~i~LiDTPGI~ 318 (596)
.-.+|+|+|..++|||||+++|+..... . . ....|.|....... -...+.|+||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3578999999999999999999954311 0 0 11235555433322 34689999999975
Q ss_pred cCCCCChHHHHHhhccccccccCCCch----hH---HHHHhhCCcchhhhhhCCCCC
Q 007611 319 MLKSGENDASIALRNCKRIEKLDDPVG----PV---KEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~D~~~----~v---~~iL~~~~~~~L~~l~ki~~~ 368 (596)
.. .......+..++.+..+.|+.. .. ..++.....+.++++||+|.+
T Consensus 82 ~f---~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DF---IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HH---HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred ce---eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch
Confidence 32 1234445666776665555432 12 234445566788899999987
No 168
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.11 E-value=5.7e-06 Score=80.11 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=50.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
+.++|+|||.+|||||||++.+.........++.|.+.. .+.. +..+.|+||||..... ......+++++.+..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~~~~~~~l~D~~G~~~~~---~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYKNLKFTMWDVGGQDKLR---PLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEECCEEEEEEECCCCHhHH---HHHHHHhcCCCEEEE
Confidence 468999999999999999999975544333333333222 2222 3468999999975321 122345677777766
Q ss_pred cCCC
Q 007611 340 LDDP 343 (596)
Q Consensus 340 l~D~ 343 (596)
+.|.
T Consensus 91 v~D~ 94 (182)
T PTZ00133 91 VVDS 94 (182)
T ss_pred EEeC
Confidence 6554
No 169
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.11 E-value=2.3e-06 Score=79.81 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=45.6
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.+|+|||.||||||||+|++...... ..++.|+.. ...+.++. .+.|+||||...... -....+++++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~~~~~ 76 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA---MRDLYIKNGQGF 76 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccccch---HHHHHhhcCCEE
Confidence 57999999999999999999976532 233334322 12233332 467899999754321 122345566655
Q ss_pred cccCC
Q 007611 338 EKLDD 342 (596)
Q Consensus 338 ~~l~D 342 (596)
..+-|
T Consensus 77 ilv~d 81 (163)
T cd04136 77 VLVYS 81 (163)
T ss_pred EEEEE
Confidence 44433
No 170
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.11 E-value=4.2e-06 Score=86.88 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=41.6
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccC--------CCCcee-eeEEEEe--C---CcEEEEecCCCccC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGA--------TPGLTR-SMQEVQL--D---KNVKLLDCPGVVML 320 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~--------~PgtTr-~~q~v~l--~---~~i~LiDTPGI~~~ 320 (596)
.++|+|||.+|+|||||||+|.+..+...+. .+.|+. ......+ + -++.|+||||+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 4789999999999999999999988765533 233322 1112222 2 25899999999765
No 171
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.10 E-value=2.5e-06 Score=97.27 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=64.8
Q ss_pred eEEEeecCCCCCcchHHHhhhccccc--cccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~--~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
+.|+++|++|+|||||+|+|++.... .....+|+|.+.....+ +..+.|+||||.... .......+.+++.+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f---~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF---ISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH---HHHHHhhhccCCEE
Confidence 46999999999999999999985421 12235688877654332 357889999995321 11122334556655
Q ss_pred cccCCCch----h---HHHHHhhCCcc-hhhhhhCCCCCC
Q 007611 338 EKLDDPVG----P---VKEILNRCPAN-LLISLYKLPSFD 369 (596)
Q Consensus 338 ~~l~D~~~----~---v~~iL~~~~~~-~L~~l~ki~~~~ 369 (596)
..+.|... . ...++...+.+ .++++||+|...
T Consensus 78 ILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 78 LLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN 117 (581)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence 55544322 1 12244445555 778889998753
No 172
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.10 E-value=1.4e-05 Score=73.37 Aligned_cols=53 Identities=28% Similarity=0.321 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
.+++.+...+..+|+||.|+|+.+|.+.....+.+.+ .+|+|+|+||+||.+.
T Consensus 51 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 51 RLYSALIVTAADADVIALVQSATDPESRFPPGFASIF-----VKPVIGLVTKIDLAEA 103 (142)
T ss_pred HHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-----cCCeEEEEEeeccCCc
Confidence 4566666678999999999999999887664443322 3699999999999864
No 173
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.10 E-value=5.3e-06 Score=78.46 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=49.4
Q ss_pred ceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.++|+|||.||||||||+|++.+.+... ..++.|++.....+.++. .+.|+||||..... ......+++++.+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~---~~~~~~~~~ad~~ 79 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR---TITTAYYRGAMGI 79 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH---HHHHHHhCCCCEE
Confidence 3789999999999999999999876422 233344444334444432 57899999964321 1123455666665
Q ss_pred cccCC
Q 007611 338 EKLDD 342 (596)
Q Consensus 338 ~~l~D 342 (596)
..+-|
T Consensus 80 i~v~d 84 (167)
T cd01867 80 ILVYD 84 (167)
T ss_pred EEEEE
Confidence 54443
No 174
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.10 E-value=5.3e-06 Score=78.06 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=47.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.++|+|||.+|||||||+|+|.+...... ..+.|+......+.++. .+.|+||||-..-. ......+++++.+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---~~~~~~~~~~d~~ 79 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR---TITQSYYRSANGA 79 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH---HHHHHHhccCCEE
Confidence 36899999999999999999987664332 22223222333444443 67899999953211 1123345555555
Q ss_pred cccCC
Q 007611 338 EKLDD 342 (596)
Q Consensus 338 ~~l~D 342 (596)
..+-|
T Consensus 80 llv~d 84 (165)
T cd01864 80 IIAYD 84 (165)
T ss_pred EEEEE
Confidence 44433
No 175
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.08 E-value=4.6e-06 Score=78.70 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=48.4
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLD 341 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~ 341 (596)
++|+++|.+|||||||+++|.........++-|.. ...+.. .-++.|+||||..... ......+++|+.+..+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~--~~~~~~~~~~~~l~D~~G~~~~~---~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDKIR---PLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcc--eEEEEECCEEEEEEECCCCHhHH---HHHHHHhcCCCEEEEEE
Confidence 47999999999999999999755433222222222 222222 3468999999975321 12234567888777776
Q ss_pred CCc
Q 007611 342 DPV 344 (596)
Q Consensus 342 D~~ 344 (596)
|..
T Consensus 76 D~~ 78 (159)
T cd04150 76 DSN 78 (159)
T ss_pred eCC
Confidence 653
No 176
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.07 E-value=9.7e-06 Score=91.39 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=76.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhc--cccccccCCC-------------------CceeeeEEEEe---CCcEEEEecCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKR--CHVANVGATP-------------------GLTRSMQEVQL---DKNVKLLDCPG 316 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~--~kv~~vs~~P-------------------gtTr~~q~v~l---~~~i~LiDTPG 316 (596)
...+|+|||++|+|||||+++|+. ..+...+... |.|.......+ +.++.|+||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 456899999999999999999863 2122222111 23322222222 56789999999
Q ss_pred CccCCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhcc
Q 007611 317 VVMLKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRGK 384 (596)
Q Consensus 317 I~~~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g~ 384 (596)
...- ...+...|+.++.+..+.|... .+..++.....+.++.+||+|... +.++++..+....+.
T Consensus 90 ~~df---~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 90 HEDF---SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred hhhH---HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 8522 2345567777877766655432 122334444567888899999753 667777777776654
No 177
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.07 E-value=6.6e-06 Score=91.71 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=64.4
Q ss_pred cccceEEEeecCCCCCcchHHHhhhccccccc--------------cC------------------CCCceeeeEEEEe-
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANV--------------GA------------------TPGLTRSMQEVQL- 305 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~v--------------s~------------------~PgtTr~~q~v~l- 305 (596)
.+..++|+|||++|+|||||+++|+...-... |. ..|+|.+.....+
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35679999999999999999999985421111 11 1244555443333
Q ss_pred --CCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCC-cchhhhhhCCCCCC
Q 007611 306 --DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCP-ANLLISLYKLPSFD 369 (596)
Q Consensus 306 --~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~-~~~L~~l~ki~~~~ 369 (596)
+.++.|+||||... -.......+..++.+..+.|... ....++.... ++.++.+||+|...
T Consensus 104 ~~~~~i~~iDTPGh~~---f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEKRKFIIADTPGHEQ---YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred cCCcEEEEEECCCcHH---HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 46899999999421 11223334566666655544322 1223444444 34566889999763
No 178
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.07 E-value=3.3e-05 Score=72.02 Aligned_cols=93 Identities=26% Similarity=0.502 Sum_probs=66.2
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH--HHHHHHHHHHHhcCCeEEEEcchhH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR--ESVEKWLKYLREELPAVAFKCSTQE 216 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~--e~l~~Wl~yLr~~~ptv~f~~~~~~ 216 (596)
....+..+|+||+|+|+.+|.+.....+...+.. .++|+++|+||+||.+. .....|...++..++.....
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----- 150 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYA----- 150 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCC-----
Confidence 3456789999999999999988766655555543 36899999999999987 67778888887766421100
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
.....|+....|.+.+++.+..
T Consensus 151 --------------~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 151 --------------PIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred --------------ceEEEeccCCCCHHHHHHHHHH
Confidence 1113455667788888877653
No 179
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.07 E-value=5e-06 Score=80.23 Aligned_cols=77 Identities=25% Similarity=0.231 Sum_probs=48.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
+.++|+|+|.+|||||||+|+|.+.......++.+.+. ..+.+ +..+.++||||..... ......+++++.+..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~~~~---~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHEQAR---RLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCHHHH---HHHHHHhccCCEEEE
Confidence 46889999999999999999999876544433333332 23333 3467899999964321 111234455555544
Q ss_pred cCC
Q 007611 340 LDD 342 (596)
Q Consensus 340 l~D 342 (596)
+.|
T Consensus 93 V~D 95 (190)
T cd00879 93 LVD 95 (190)
T ss_pred EEE
Confidence 433
No 180
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.07 E-value=6.4e-06 Score=89.64 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=65.7
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcc------ccccc---------cCCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRC------HVANV---------GATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~------kv~~v---------s~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
++.++|+++|++|+|||||+++|++. ..... ....|+|.+...+.+ +.++.|+||||...-
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f- 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY- 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH-
Confidence 46799999999999999999999843 11111 113789988776665 346999999997522
Q ss_pred CCChHHHHHhhccccccccCCCch----h---HHHHHhhCCcchh-hhhhCCCCCC
Q 007611 322 SGENDASIALRNCKRIEKLDDPVG----P---VKEILNRCPANLL-ISLYKLPSFD 369 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~----~---v~~iL~~~~~~~L-~~l~ki~~~~ 369 (596)
. ......+.+++.+..+.|... . ...++...+.+.+ +.+||+|...
T Consensus 89 -~-~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 -V-KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred -H-HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC
Confidence 1 122233444455444443321 1 1223334455555 5789999764
No 181
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.07 E-value=4.4e-06 Score=95.17 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=62.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCC-ceeeeEEEE--eC-------------------CcEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG-LTRSMQEVQ--LD-------------------KNVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pg-tTr~~q~v~--l~-------------------~~i~LiDTPGI~ 318 (596)
++..|+|+|++|+|||||||+|++..+ +...|| +|++.-... .+ .++.|+||||..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 456799999999999999999999865 333444 665422111 10 248899999964
Q ss_pred cCCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 319 MLKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
... ......++.++.+..+.|... ....++.....+.++..||+|...
T Consensus 81 ~f~---~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 81 AFT---NLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred hHH---HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 221 112223455555554444321 112234445567788889998753
No 182
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.06 E-value=1.3e-05 Score=75.30 Aligned_cols=93 Identities=23% Similarity=0.300 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCC-CCCCc-HHHHHHHHHhC---CCCceeEEeeccCCCCHHHHHHHHHHHHhc---CC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDP-LGTRC-IDMEKMVMKAG---PDKHLVLLLNKIDLVPRESVEKWLKYLREE---LP 206 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdP-l~sr~-~~le~~i~~~~---~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~---~p 206 (596)
+...+++.+..+|+||+|+|+.++ -+... ..+.+.+.... .++|+|+|+||+||++...+..|+..+... .+
T Consensus 68 ~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T cd01898 68 LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKP 147 (170)
T ss_pred chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCC
Confidence 344555667789999999999987 22211 12222232221 368999999999999888777777655443 22
Q ss_pred eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 207 tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
++. .|+....|.+.|++.|.+
T Consensus 148 ~~~-------------------------~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 148 VFP-------------------------ISALTGEGLDELLRKLAE 168 (170)
T ss_pred EEE-------------------------EecCCCCCHHHHHHHHHh
Confidence 222 334456788888877654
No 183
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.05 E-value=6.2e-06 Score=79.85 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=46.0
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc--ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN--VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~--vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++|+|||.||||||||||+|++.+... ..++.|.+.....+.++. .+.|+||||...... .....+++++.+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~~d~i 77 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA---MSRIYYRGAKAA 77 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh---hhHhhcCCCCEE
Confidence 479999999999999999999876421 222333333333344443 356899999743211 112234555555
Q ss_pred cccCC
Q 007611 338 EKLDD 342 (596)
Q Consensus 338 ~~l~D 342 (596)
..+-|
T Consensus 78 ilv~d 82 (193)
T cd04118 78 IVCYD 82 (193)
T ss_pred EEEEE
Confidence 44433
No 184
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.05 E-value=3.3e-05 Score=76.18 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEE
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPL-GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFK 211 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl-~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~ 211 (596)
..|...+...+..+|++|+|+|+.+|. ..........+... ..+|+|+|+||+||++...+...+..+++.+......
T Consensus 94 ~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~ 172 (203)
T cd01888 94 EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAE 172 (203)
T ss_pred HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccC
Confidence 457888888899999999999999863 22222233333222 2457899999999998655444444444322110000
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.....++|+..+.|.+.|++.|.+..+
T Consensus 173 -----------------~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 173 -----------------NAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred -----------------CCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 001123455677899999999987554
No 185
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.04 E-value=7.1e-06 Score=76.64 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=46.7
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|+|.||||||||+|.|.+..... ..++.|+......+.++ ..+.|+||||...-. ......+++++.+.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---~~~~~~~~~~~~~i 77 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR---SVTRSYYRGAAGAL 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHH---HhHHHHhcCCCEEE
Confidence 479999999999999999999876422 22233332222333332 257899999974221 11233455555554
Q ss_pred ccCCC
Q 007611 339 KLDDP 343 (596)
Q Consensus 339 ~l~D~ 343 (596)
.+-|+
T Consensus 78 ~v~d~ 82 (161)
T cd04113 78 LVYDI 82 (161)
T ss_pred EEEEC
Confidence 44443
No 186
>PRK12736 elongation factor Tu; Reviewed
Probab=98.04 E-value=5.5e-06 Score=90.22 Aligned_cols=107 Identities=18% Similarity=0.248 Sum_probs=66.3
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc------ccccc---------CCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH------VANVG---------ATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k------v~~vs---------~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
+..++|+++|++++|||||+++|++.. ..... -..|+|.+...+.+ +.++.|+||||...-
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f- 88 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY- 88 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH-
Confidence 467999999999999999999998631 00111 15688988766555 457999999995321
Q ss_pred CCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcc-hhhhhhCCCCCC
Q 007611 322 SGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPAN-LLISLYKLPSFD 369 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~-~L~~l~ki~~~~ 369 (596)
.......+..++.+..+.|... ....++...+.+ .++.+||+|...
T Consensus 89 --~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 89 --VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred --HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc
Confidence 1122333444555444444321 122334445555 356789999753
No 187
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.04 E-value=5.5e-06 Score=94.66 Aligned_cols=138 Identities=21% Similarity=0.240 Sum_probs=81.1
Q ss_pred EEEeecCCCCCcchHHHhhhccccc--------ccc------CCCCceeeeEEEEe-----C---CcEEEEecCCCccCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVA--------NVG------ATPGLTRSMQEVQL-----D---KNVKLLDCPGVVMLK 321 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~--------~vs------~~PgtTr~~q~v~l-----~---~~i~LiDTPGI~~~~ 321 (596)
+|+|||++|+|||||+++|+...-+ .+. ...|+|.....+.+ + ..+.|+||||.....
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 6999999999999999999864211 111 12477776554433 2 368999999997542
Q ss_pred CCChHHHHHhhccccccccCCCchh-----HHH--HHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhcccccCCcccH
Q 007611 322 SGENDASIALRNCKRIEKLDDPVGP-----VKE--ILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRGKLKKGGIVDV 393 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~~-----v~~--iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g~l~kggi~di 393 (596)
......++.|+.+..+.|.... ... .+.....+.++++||+|... +.+.....++...+. ....++.+
T Consensus 85 ---~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~-~~~~vi~v 160 (595)
T TIGR01393 85 ---YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL-DASEAILA 160 (595)
T ss_pred ---HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC-CcceEEEe
Confidence 2344567777777666554321 111 11223446778889999643 344455555554442 11134555
Q ss_pred HHHHHHHHHHHH
Q 007611 394 EAAARIILHDWN 405 (596)
Q Consensus 394 ~aaa~~~L~d~~ 405 (596)
|+.....+.++.
T Consensus 161 SAktG~GI~~Ll 172 (595)
T TIGR01393 161 SAKTGIGIEEIL 172 (595)
T ss_pred eccCCCCHHHHH
Confidence 655554444333
No 188
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.04 E-value=6.1e-06 Score=82.49 Aligned_cols=80 Identities=24% Similarity=0.409 Sum_probs=56.4
Q ss_pred cccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcccccccc-------CCCCceeeeEEEE------e
Q 007611 239 DCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVG-------ATPGLTRSMQEVQ------L 305 (596)
Q Consensus 239 ~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs-------~~PgtTr~~q~v~------l 305 (596)
...|.+.+++.++.-+-..+ ..++|+|||..+.|||||+|+|..+++...+ ++|.||.--...+ +
T Consensus 25 gyvGidtI~~Qm~~k~mk~G--F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 25 GYVGIDTIIEQMRKKTMKTG--FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ccccHHHHHHHHHHHHHhcc--CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecce
Confidence 46789999988876543333 3589999999999999999999988765433 3444443211111 1
Q ss_pred CCcEEEEecCCCccC
Q 007611 306 DKNVKLLDCPGVVML 320 (596)
Q Consensus 306 ~~~i~LiDTPGI~~~ 320 (596)
--++.+|||||+...
T Consensus 103 klkltviDTPGfGDq 117 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQ 117 (336)
T ss_pred EEEEEEecCCCcccc
Confidence 236889999999865
No 189
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.03 E-value=8.7e-06 Score=76.82 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=46.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|+|.+|||||||+|+|.+.+.... .++-|++.....+..+ ..+.|+||||..... ......+++++.+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~---~~~~~~~~~~~~~l 78 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR---TITTAYYRGAMGFI 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH---HHHHHHccCCcEEE
Confidence 5799999999999999999998875322 1222322222233222 358899999965321 11233455665554
Q ss_pred ccCC
Q 007611 339 KLDD 342 (596)
Q Consensus 339 ~l~D 342 (596)
.+-|
T Consensus 79 ~v~d 82 (165)
T cd01865 79 LMYD 82 (165)
T ss_pred EEEE
Confidence 4433
No 190
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.02 E-value=1.1e-05 Score=75.82 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=47.8
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
+|+|||.||||||||+++++.... ++.++.++.. ...+.++. .+.|+||||...... ......++.++.+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~~~~~~~~~~d~~i 76 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT--EQLERSIRWADGFV 76 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc--chHHHHHHhCCEEE
Confidence 489999999999999999987543 3344444422 22233333 477999999874211 12334566777666
Q ss_pred ccCCC
Q 007611 339 KLDDP 343 (596)
Q Consensus 339 ~l~D~ 343 (596)
.+-|.
T Consensus 77 ~v~d~ 81 (165)
T cd04146 77 LVYSI 81 (165)
T ss_pred EEEEC
Confidence 55554
No 191
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.02 E-value=8.7e-06 Score=75.38 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=36.8
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeCC---cEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~~---~i~LiDTPGI~~ 319 (596)
++|+|+|.||||||||+|+|++.... ...+.|+... ..+.++. .+.++||||...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 61 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 61 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcc
Confidence 57999999999999999999987642 2333333221 1223332 366899999643
No 192
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.02 E-value=7.5e-06 Score=78.11 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=50.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
+.++|+++|.+|||||||+++|.........++.|.+. ..+.. .-.+.|+||||..... ......+++++.+..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKIR---PLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccce--EEEEECCEEEEEEECCCCHHHH---HHHHHHhccCCEEEE
Confidence 35789999999999999999998655433333333332 22322 3468999999985321 112335667776666
Q ss_pred cCCCc
Q 007611 340 LDDPV 344 (596)
Q Consensus 340 l~D~~ 344 (596)
+.|..
T Consensus 83 v~D~t 87 (168)
T cd04149 83 VVDSA 87 (168)
T ss_pred EEeCC
Confidence 65543
No 193
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.01 E-value=1.8e-05 Score=79.67 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=60.8
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCcee---------------eeE--EEEe-----------CCcEEEEecC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR---------------SMQ--EVQL-----------DKNVKLLDCP 315 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr---------------~~q--~v~l-----------~~~i~LiDTP 315 (596)
+|+|||+++.|||||+++|+...-.......|.++ ... .+.+ +..+.|+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 59999999999999999998543211111222222 211 1111 3468899999
Q ss_pred CCccCCCCChHHHHHhhccccccccCCCch----hHHHHHh---hCCcchhhhhhCCCCC
Q 007611 316 GVVMLKSGENDASIALRNCKRIEKLDDPVG----PVKEILN---RCPANLLISLYKLPSF 368 (596)
Q Consensus 316 GI~~~~~~~~~~~~~L~~~~~i~~l~D~~~----~v~~iL~---~~~~~~L~~l~ki~~~ 368 (596)
|...- ...+...++.++.+..+.|... ....++. ....+.++++||+|..
T Consensus 82 G~~~f---~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDF---SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred Ccccc---HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99753 2345566777776655544332 1122222 2344677888999965
No 194
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.00 E-value=7.8e-06 Score=76.21 Aligned_cols=55 Identities=27% Similarity=0.319 Sum_probs=36.2
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeC-----CcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLD-----KNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~-----~~i~LiDTPGI~ 318 (596)
++|+|||.+|||||||+|+|++..... ...|.++.. ...+.+. -.+.|+||||..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE 62 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH
Confidence 479999999999999999999865321 112222222 2223332 258899999953
No 195
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.00 E-value=1.1e-05 Score=75.87 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=47.2
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++|+|+|.||||||||+|+|.+..... ...|.++.. ...+.++ .++.|+||||..... ......+++++.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~~~~~~~~~~~~i 78 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR---TITSSYYRGAHGI 78 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH---HHHHHHhCcCCEE
Confidence 689999999999999999999876422 223333322 2223332 257899999954321 1123345566666
Q ss_pred cccCCC
Q 007611 338 EKLDDP 343 (596)
Q Consensus 338 ~~l~D~ 343 (596)
..+-|.
T Consensus 79 i~v~d~ 84 (166)
T cd01869 79 IIVYDV 84 (166)
T ss_pred EEEEEC
Confidence 555443
No 196
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.00 E-value=4e-06 Score=96.08 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=65.3
Q ss_pred eEEEeecCCCCCcchHHHhhhccccc--cccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~--~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
+-||++|++|+|||||+|+|++.... ......|+|.+.....+ +..+.|+||||...- ...+...+.+++.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f---i~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF---LSNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH---HHHHHHHhhcCCE
Confidence 35899999999999999999985432 22344688887654433 346789999997321 1122334556655
Q ss_pred ccccCCCch-------hHHHHHhhCCcch-hhhhhCCCCCC
Q 007611 337 IEKLDDPVG-------PVKEILNRCPANL-LISLYKLPSFD 369 (596)
Q Consensus 337 i~~l~D~~~-------~v~~iL~~~~~~~-L~~l~ki~~~~ 369 (596)
+..+.|... ....++...+.+. ++++||+|...
T Consensus 78 ~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 78 ALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD 118 (614)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC
Confidence 554544321 1223455555454 57889999753
No 197
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.00 E-value=4.3e-05 Score=72.71 Aligned_cols=113 Identities=21% Similarity=0.282 Sum_probs=70.4
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcch
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCST 214 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~ 214 (596)
|...+...+..+|++|+|+|+.++.......+...+.. .++|+++|+||+|+++.+.+.....++++.+....+....
T Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 75 FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh
Confidence 44556677889999999999999876554444444443 4799999999999998655555555554443221110000
Q ss_pred hHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
+.. + .........+.|+..+.|.+.|+..|..+.+
T Consensus 153 ~~~-----~-~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 153 EEG-----T-RNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhh-----c-ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 000 0 0000112335677788899999999887653
No 198
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.00 E-value=2.7e-06 Score=75.95 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=54.7
Q ss_pred eecCCCCCcchHHHhhhccccccccCCCCcee---eeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 267 VIGLPNVGKSSLINSLKRCHVANVGATPGLTR---SMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 267 vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr---~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
|+|.||+|||||+|+|.+..... . ...+|. ....+.. ...+.|+||||...... .....+..++.+..+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~~~~i~v 75 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-E-EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS---LRRLYYRGADGIILV 75 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-c-ccccchhheeeEEEEECCEEEEEEEEecCChHHHHh---HHHHHhcCCCEEEEE
Confidence 68999999999999999876521 1 111221 1112222 45789999999875422 113345555555544
Q ss_pred CCCchhH-----HH----H---HhhCCcchhhhhhCCCCCC
Q 007611 341 DDPVGPV-----KE----I---LNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 341 ~D~~~~v-----~~----i---L~~~~~~~L~~l~ki~~~~ 369 (596)
.|...+. .. . ......+.+++++++|...
T Consensus 76 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 76 YDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 4433221 11 1 1122346667778877653
No 199
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.00 E-value=4.5e-05 Score=70.83 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhc----
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREE---- 204 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~----l~~Wl~yLr~~---- 204 (596)
..|...+...+..+|+||+|+|+++.+..........+... +.+|+|+|+||+||.+... ...+..++...
T Consensus 62 ~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04171 62 EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLAD 140 (164)
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCC
Confidence 34566667778899999999999885443333322333322 2459999999999987642 34444555432
Q ss_pred CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 205 ~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
.|.+ ..|+....|.+.|+..|..
T Consensus 141 ~~~~-------------------------~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 141 APIF-------------------------PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CcEE-------------------------EEeCCCCcCHHHHHHHHhh
Confidence 2332 2344556788888877753
No 200
>PLN03126 Elongation factor Tu; Provisional
Probab=97.98 E-value=1.1e-05 Score=89.84 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=65.7
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcccccc---------------ccCCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVAN---------------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~---------------vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
+..++|+++|++|+|||||+|+|+...... -....|+|.+.....+ +.++.||||||...-
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f- 157 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY- 157 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH-
Confidence 567999999999999999999999632111 1223577776554443 568999999997532
Q ss_pred CCChHHHHHhhccccccccCCCc----h---hHHHHHhhCCcc-hhhhhhCCCCCC
Q 007611 322 SGENDASIALRNCKRIEKLDDPV----G---PVKEILNRCPAN-LLISLYKLPSFD 369 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~----~---~v~~iL~~~~~~-~L~~l~ki~~~~ 369 (596)
...+...+..++.+..+.|.. . ....++...+.+ .++.+||+|...
T Consensus 158 --~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 --VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred --HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 112233444455444443322 1 122334445555 456789999764
No 201
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.98 E-value=2.5e-05 Score=76.50 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=47.8
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC----CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~----~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++|+|||.+|||||||+|.|++..... ..++.|.......+.++ -.+.|+||||..... ......+++++.+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~---~~~~~~~~~a~~~ 77 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG---GMTRVYYRGAVGA 77 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh---hhHHHHhCCCCEE
Confidence 479999999999999999999865322 12222222222334443 247899999974321 1223456777766
Q ss_pred cccCCC
Q 007611 338 EKLDDP 343 (596)
Q Consensus 338 ~~l~D~ 343 (596)
..+-|.
T Consensus 78 ilv~D~ 83 (201)
T cd04107 78 IIVFDV 83 (201)
T ss_pred EEEEEC
Confidence 655554
No 202
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.97 E-value=3.5e-06 Score=87.45 Aligned_cols=85 Identities=21% Similarity=0.204 Sum_probs=54.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccC----CCCceeeeEEEEeCCcEEEEecCCCccCCCCC--hH---HHHHh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGA----TPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGE--ND---ASIAL 331 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~----~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~--~~---~~~~L 331 (596)
....|+||||+|+|||||||+|++..+. .-+ +--+|++.-...-+..+.|.||-|++..-+.. .. ....+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 4678999999999999999999965431 112 22334444334446778999999998653321 12 22334
Q ss_pred hccccccccCCCchh
Q 007611 332 RNCKRIEKLDDPVGP 346 (596)
Q Consensus 332 ~~~~~i~~l~D~~~~ 346 (596)
..++.+.++.|...|
T Consensus 256 aeadlllHvvDiShP 270 (410)
T KOG0410|consen 256 AEADLLLHVVDISHP 270 (410)
T ss_pred hhcceEEEEeecCCc
Confidence 456666777665444
No 203
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.97 E-value=1e-05 Score=74.17 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=45.4
Q ss_pred EEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccccCCC
Q 007611 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~ 343 (596)
|+|+|.+|||||||+|+|.+.... ....|.+......+.. ...+.++||||..... ......+..++.+..+.|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFR---SMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcceEEEEECCEEEEEEECCCCHhHH---HHHHHHHhcCCEEEEEEEC
Confidence 899999999999999999987642 2223333222222222 2357899999964321 1123345556655555443
No 204
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.97 E-value=6e-06 Score=95.89 Aligned_cols=106 Identities=14% Similarity=0.306 Sum_probs=67.3
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-----CCcEEEEecCCCccCCCCChHHHHHhh
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-----DKNVKLLDCPGVVMLKSGENDASIALR 332 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-----~~~i~LiDTPGI~~~~~~~~~~~~~L~ 332 (596)
.++..|+|+|++|+|||||+|+|++.... .+..+|+|.+...+. + +..+.|+||||..... ......+.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~---~mr~rg~~ 317 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS---SMRSRGAN 317 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH---HHHHHHHH
Confidence 46789999999999999999999987653 345577887644322 1 2579999999974221 11223445
Q ss_pred ccccccccCCCch---h----HHHHHhhCCcchhhhhhCCCCCC
Q 007611 333 NCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 333 ~~~~i~~l~D~~~---~----v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
.++.+..+.|... + ....+.....+.++.+|++|...
T Consensus 318 ~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 318 VTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred HCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 5555554443221 1 11223334557788889998753
No 205
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.96 E-value=1.4e-05 Score=75.99 Aligned_cols=102 Identities=12% Similarity=0.123 Sum_probs=56.7
Q ss_pred eEEEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|||.+|||||||+|+++.... ....++.|+......+..+ -.+.++||||........ ...++.++.+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---~~~~~~~d~~i 77 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR---DGYYIGGQCAI 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc---HHHhcCCCEEE
Confidence 4799999999999999999986542 2233333433332223222 357899999986432211 22345555554
Q ss_pred ccCCCchh-----H----HHHHhhC-CcchhhhhhCCCC
Q 007611 339 KLDDPVGP-----V----KEILNRC-PANLLISLYKLPS 367 (596)
Q Consensus 339 ~l~D~~~~-----v----~~iL~~~-~~~~L~~l~ki~~ 367 (596)
.+-|.... + ..+...+ ..+.+++.|++|.
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl 116 (166)
T cd00877 78 IMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDI 116 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhc
Confidence 44333221 1 2222223 3455666677764
No 206
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.96 E-value=1.1e-05 Score=92.09 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=61.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCC-CceeeeEEEEe--C-------------------CcEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP-GLTRSMQEVQL--D-------------------KNVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P-gtTr~~q~v~l--~-------------------~~i~LiDTPGI~ 318 (596)
++..|+|+|++|+|||||+|+|++..+ +...| |+|++.-.... + ..+.|+||||..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc--ccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 567899999999999999999998754 33344 34544321110 0 137899999986
Q ss_pred cCCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCC
Q 007611 319 MLKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
.... .....+..++.+..+.|... ....++.....+.++.+|++|..
T Consensus 83 ~f~~---~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTN---LRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred HHHH---HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 4311 11223344554444444321 11223444455677888999864
No 207
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.96 E-value=3.5e-05 Score=78.46 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.8
Q ss_pred ceEEEeecCCCCCcchHHHhhhccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...|+|||..++|||||||+|.|..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 4579999999999999999999875
No 208
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.95 E-value=2.3e-05 Score=88.41 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=72.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhc--cccccccCCC-------------------CceeeeEEEE--e-CCcEEEEecCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKR--CHVANVGATP-------------------GLTRSMQEVQ--L-DKNVKLLDCPG 316 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~--~kv~~vs~~P-------------------gtTr~~q~v~--l-~~~i~LiDTPG 316 (596)
.-.+|+|||++|+|||||+++|+. ..+...+.+. |.|....... . +..+.|+||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 346899999999999999999973 2121222211 2222222122 2 45799999999
Q ss_pred CccCCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 317 VVMLKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 317 I~~~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
...- ...+...|+.++.+..+.|... .+..++...+.+.++.+||+|... +..+++..+....+
T Consensus 89 ~~df---~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 89 HEDF---SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred chhh---HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhC
Confidence 8532 1335567777777766665432 122333344567888889998654 55556666655444
No 209
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.95 E-value=7.9e-06 Score=77.28 Aligned_cols=55 Identities=25% Similarity=0.254 Sum_probs=36.9
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCc----eeeeEEEEeCCcEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGL----TRSMQEVQLDKNVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pgt----Tr~~q~v~l~~~i~LiDTPGI~~ 319 (596)
++|+|||.+|||||||+|+|.+.+.. +.+|.+ |...........+.++||||...
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ 59 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccceEeeeeecCCeEEEEEEeCCCchh
Confidence 37999999999999999999987653 223332 22111111123678999999753
No 210
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.95 E-value=1e-05 Score=77.14 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=61.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceee---eEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS---MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNC 334 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~---~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~ 334 (596)
..++|+|||.+|||||||+|++++.... +..+.+|+.. ...+.++. .+.+.||+|-...... ....+.++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~---~~~~~~~~ 78 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL---NDAELAAC 78 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc---chhhhhcC
Confidence 3578999999999999999999987643 2333343321 22333332 4677899987543211 12234677
Q ss_pred ccccccCCCchh-----HHHHHhhC----CcchhhhhhCCCCC
Q 007611 335 KRIEKLDDPVGP-----VKEILNRC----PANLLISLYKLPSF 368 (596)
Q Consensus 335 ~~i~~l~D~~~~-----v~~iL~~~----~~~~L~~l~ki~~~ 368 (596)
+.+..+-|...+ +..++... ..+.+++.||+|..
T Consensus 79 d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 79 DVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 766655554321 22333322 34667778888753
No 211
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.93 E-value=1.6e-05 Score=74.68 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=45.1
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCcee-eeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR-SMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr-~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|+|.+|||||||+|+|++.... ....|.... ....+.. ...+.++||||....... ....++.++.+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~---~~~~~~~~~~~i 76 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL---RPLSYPNTDVFL 76 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc---chhhcCCCCEEE
Confidence 47999999999999999999988751 222222111 1111122 225889999998743211 112335555555
Q ss_pred ccCCC
Q 007611 339 KLDDP 343 (596)
Q Consensus 339 ~l~D~ 343 (596)
.+-|+
T Consensus 77 ~v~d~ 81 (171)
T cd00157 77 ICFSV 81 (171)
T ss_pred EEEEC
Confidence 44443
No 212
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.93 E-value=1e-05 Score=75.86 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=45.0
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++|+|+|.||||||||+|+++.... +..++.|+... ..+.++. .+.|+||||...... -....+++++.+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~~d~~ 76 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA---MRDLYMKNGQGF 76 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh---HHHHHHhhCCEE
Confidence 5799999999999999999986543 33344454332 2233332 456899999754321 123345555554
Q ss_pred ccc
Q 007611 338 EKL 340 (596)
Q Consensus 338 ~~l 340 (596)
..+
T Consensus 77 ilv 79 (164)
T cd04175 77 VLV 79 (164)
T ss_pred EEE
Confidence 444
No 213
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.93 E-value=1.4e-05 Score=78.30 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=60.0
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
+|+|||.+|||||||+|+|++.... ..++.++.... .+.++ -.+.|+||||...... .....+.+++.+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~ad~vi 75 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA---MRKLSIQNSDAFA 75 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH---HHHHHhhcCCEEE
Confidence 4899999999999999999987642 22333332221 23332 2578999999754311 1223556667666
Q ss_pred ccCCCchh-----H----HHHHhh---CCcchhhhhhCCCCCC
Q 007611 339 KLDDPVGP-----V----KEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 339 ~l~D~~~~-----v----~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
.+.|...+ + ..++.. ...+.+++.|++|...
T Consensus 76 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 76 LVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 55554321 1 122222 2346777888888643
No 214
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.91 E-value=1.4e-05 Score=73.98 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=45.2
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.+|+|||.+|||||||+|+|.+..... ...+.++... ..+.+. ..+.++||||-..... .....+.+++.+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~ 76 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA---LGPIYYRDADGA 76 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH---hhHHHhccCCEE
Confidence 369999999999999999999876532 2222222221 223322 2578999999543311 112234555555
Q ss_pred cccCC
Q 007611 338 EKLDD 342 (596)
Q Consensus 338 ~~l~D 342 (596)
..+-|
T Consensus 77 i~v~d 81 (162)
T cd04123 77 ILVYD 81 (162)
T ss_pred EEEEE
Confidence 54443
No 215
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.91 E-value=1.8e-05 Score=77.62 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=47.5
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.++|+|||.+|||||||+|+|.+.... ...++.|+......+.++. .+.|+||||-.... ......+++++.+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---~~~~~~~~~a~~i 82 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR---TITSTYYRGTHGV 82 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH---HHHHHHhCCCcEE
Confidence 578999999999999999999987643 1233334333233333332 57899999964321 1123344555544
Q ss_pred cccCC
Q 007611 338 EKLDD 342 (596)
Q Consensus 338 ~~l~D 342 (596)
..+-|
T Consensus 83 ilv~D 87 (199)
T cd04110 83 IVVYD 87 (199)
T ss_pred EEEEE
Confidence 44433
No 216
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.91 E-value=1.7e-05 Score=76.66 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=50.1
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|+|.+|||||||+|.|.+..... ..++.|.+.....+.++. .+.|+||||..... ......+.+++.+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~---~~~~~~~~~~d~ii 77 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR---SLNNSYYRGAHGYL 77 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH---hhHHHHccCCCEEE
Confidence 479999999999999999999877533 333444444344444432 46789999964321 12234566666665
Q ss_pred ccCCC
Q 007611 339 KLDDP 343 (596)
Q Consensus 339 ~l~D~ 343 (596)
.+-|.
T Consensus 78 lv~d~ 82 (188)
T cd04125 78 LVYDV 82 (188)
T ss_pred EEEEC
Confidence 55443
No 217
>PRK10218 GTP-binding protein; Provisional
Probab=97.91 E-value=1.9e-05 Score=90.39 Aligned_cols=103 Identities=14% Similarity=0.196 Sum_probs=67.0
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc---------------ccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN---------------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE 324 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~---------------vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~ 324 (596)
-+|+|||++++|||||+++|+...-.. .....|+|.....+.+ +..+.|+||||.....
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~--- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG--- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH---
Confidence 469999999999999999999632111 1123567766554443 4578999999986432
Q ss_pred hHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCC
Q 007611 325 NDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 325 ~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
......++.++.+..+.|... .+...+...+.+.++.+||+|..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~ 133 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP 133 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC
Confidence 234456777777666655432 12223334555678889999964
No 218
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.90 E-value=4.9e-06 Score=84.00 Aligned_cols=83 Identities=28% Similarity=0.414 Sum_probs=60.4
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC----ChHHHHHhhccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG----ENDASIALRNCK 335 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~----~~~~~~~L~~~~ 335 (596)
.+|++||+|.||||||++-|++.. +.|.++-|||-....+.+ +..|.|.|.|||+..... ...+..+.|.|.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 489999999999999999999876 478888888766554333 678999999999986322 223334456676
Q ss_pred cccccCCCchh
Q 007611 336 RIEKLDDPVGP 346 (596)
Q Consensus 336 ~i~~l~D~~~~ 346 (596)
.+..+.|...|
T Consensus 139 li~~vld~~kp 149 (358)
T KOG1487|consen 139 LIFIVLDVLKP 149 (358)
T ss_pred EEEEEeeccCc
Confidence 66655555444
No 219
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.90 E-value=6.7e-05 Score=75.56 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhh--hcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCC----
Q 007611 133 RAFYKELVKVIE--VSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELP---- 206 (596)
Q Consensus 133 ~~~~kel~kvie--~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~p---- 206 (596)
+.|.++....+. .+|+++.|+||+.++......+..++... ++|+|+|+||+|++++..+..-+..+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~ 172 (224)
T cd04165 95 ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL--NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGV 172 (224)
T ss_pred HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCc
Confidence 456677777665 69999999999988765555566666543 6899999999999988655554444443321
Q ss_pred -eEEEEcchhHHhhhcCcC-cccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 207 -AVAFKCSTQEQRANLGWK-SSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 207 -tv~f~~~~~~~~~~~~~~-~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
.+++.+.+..+....... .....-....+|+..+.|.+.|.++|...
T Consensus 173 ~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 173 RKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred cccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 112211111100000000 00001123346778899999999988653
No 220
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.90 E-value=1.9e-05 Score=74.51 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=36.3
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc--ccCCCCceeeeEEEEe---CCcEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN--VGATPGLTRSMQEVQL---DKNVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~--vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~ 319 (596)
++|+|||.+|||||||||++++..... +...+.+++ ..+.. ...+.++||||...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE--EEEEECCEEEEEEEEECCCCCc
Confidence 579999999999999999999876321 111112222 22222 23578999999854
No 221
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.90 E-value=2e-05 Score=74.45 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=37.7
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeCC---cEEEEecCCCc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~~---~i~LiDTPGI~ 318 (596)
.++|+|+|.||||||||+|++++...... .++.|+.-....+.++. .+.|+||||-.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence 47899999999999999999997664221 22223322222333332 46788999964
No 222
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.90 E-value=2.1e-05 Score=74.11 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=46.9
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCc---eeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGL---TRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pgt---Tr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
++|+|||.+|||||||+|+|.+.... ...|.| +.....+.++ -.+.|+||||..... ......+++++.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~~~~ 77 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR---AVTRSYYRGAAG 77 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHH---HHHHHHhcCCCE
Confidence 67999999999999999999987642 223333 2222233343 257899999964321 112334566665
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+-|.
T Consensus 78 ~ilv~d~ 84 (166)
T cd04122 78 ALMVYDI 84 (166)
T ss_pred EEEEEEC
Confidence 5544443
No 223
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.88 E-value=2.4e-05 Score=77.73 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=48.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC----CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~----~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
++|+|||.+|||||||||.|++.... ....|-++.+. ..+.++ -.+.|+||||..... .-....+++++.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~---~l~~~~~~~ad~ 76 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG-KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG---KMLDKYIYGAHA 76 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH---HHHHHHhhcCCE
Confidence 47999999999999999999976542 22223222222 223332 257899999964331 122334677777
Q ss_pred ccccCCCc
Q 007611 337 IEKLDDPV 344 (596)
Q Consensus 337 i~~l~D~~ 344 (596)
+..+-|..
T Consensus 77 iilV~D~t 84 (215)
T cd04109 77 VFLVYDVT 84 (215)
T ss_pred EEEEEECC
Confidence 76665543
No 224
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.86 E-value=2.4e-05 Score=74.09 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=36.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeCC---cEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~~---~i~LiDTPGI~~ 319 (596)
++|+|+|.+|||||||+|++.+.... ..+..++... ..+.++. .+.++||||-..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 47999999999999999999987642 2222222221 1233332 367899999754
No 225
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.86 E-value=2.2e-05 Score=77.90 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=58.6
Q ss_pred EEEeecCCCCCcchHHHhhhccccccc---cCC---------------CCceeeeEEEEe--------CCcEEEEecCCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANV---GAT---------------PGLTRSMQEVQL--------DKNVKLLDCPGV 317 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~v---s~~---------------PgtTr~~q~v~l--------~~~i~LiDTPGI 317 (596)
+|+|+|.+++|||||+++|+....... ... .|+|-....+.+ ...+.|+||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 489999999999999999986432211 011 233322222111 136889999998
Q ss_pred ccCCCCChHHHHHhhccccccccCCCch---h-HHHH---HhhCCcchhhhhhCCCCC
Q 007611 318 VMLKSGENDASIALRNCKRIEKLDDPVG---P-VKEI---LNRCPANLLISLYKLPSF 368 (596)
Q Consensus 318 ~~~~~~~~~~~~~L~~~~~i~~l~D~~~---~-v~~i---L~~~~~~~L~~l~ki~~~ 368 (596)
... .......+..++.+..+.|... . ...+ +.....+.++++||+|..
T Consensus 82 ~~f---~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF---MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cch---HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 643 1233445666665555544321 1 1122 222345677888999865
No 226
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.85 E-value=9.3e-05 Score=70.14 Aligned_cols=92 Identities=21% Similarity=0.324 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEE
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVA 209 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv~ 209 (596)
..+++++...+..+|+||+|+|+.++.+.....+..+ ..++|+++|+||+||... ....+..++.+.. |.+.
T Consensus 52 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~ 126 (158)
T PRK15467 52 PRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFE 126 (158)
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEE
Confidence 4567777788999999999999998876555444332 246899999999999543 3334444443332 3333
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
+ |+..+.|++.|++.|....
T Consensus 127 ~-------------------------Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 127 L-------------------------NSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred E-------------------------ECCCccCHHHHHHHHHHhc
Confidence 3 3455678899998887654
No 227
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.85 E-value=2.7e-05 Score=74.04 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=46.5
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEe-CCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
+|+|||.+|||||||+|+|.+.... . +..|..... +.. +..+.++||||..... ......+++++.+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~---~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR---PLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCChhcc---hHHHHHhccCCEEEEE
Confidence 4899999999999999999986432 2 233332222 222 3468899999986432 1223455666666655
Q ss_pred CCC
Q 007611 341 DDP 343 (596)
Q Consensus 341 ~D~ 343 (596)
.|.
T Consensus 74 ~D~ 76 (169)
T cd04158 74 VDS 76 (169)
T ss_pred EeC
Confidence 443
No 228
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.85 E-value=1.8e-05 Score=76.78 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=43.1
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
+|+|||.+|||||||+|+|+..... ...+.|+.. ...+.++. .+.|+||||..... ......+++++.+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~ad~~i 75 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT---ALRDQWIREGEGFI 75 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH---HHHHHHHHhCCEEE
Confidence 4899999999999999999976542 223333321 12233332 37889999964321 11223455555554
Q ss_pred cc
Q 007611 339 KL 340 (596)
Q Consensus 339 ~l 340 (596)
.+
T Consensus 76 lv 77 (190)
T cd04144 76 LV 77 (190)
T ss_pred EE
Confidence 44
No 229
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.85 E-value=3.1e-05 Score=76.59 Aligned_cols=101 Identities=26% Similarity=0.342 Sum_probs=59.0
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-----CCcEEEEecCCCccCCCCChHHHHHhhcc-ccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-----DKNVKLLDCPGVVMLKSGENDASIALRNC-KRI 337 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-----~~~i~LiDTPGI~~~~~~~~~~~~~L~~~-~~i 337 (596)
+|.|+|.+|||||||++.|.......+ .+.++.....+.+ +..+.|+||||..... ......++++ ..+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~---~~~~~~~~~~~~~v 76 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLR---DKLLETLKNSAKGI 76 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHHH---HHHHHHHhccCCEE
Confidence 589999999999999999998754222 2222222222222 4568999999976431 1223345555 555
Q ss_pred cccCCCchh------HH----HHHhh-----CCcchhhhhhCCCCCC
Q 007611 338 EKLDDPVGP------VK----EILNR-----CPANLLISLYKLPSFD 369 (596)
Q Consensus 338 ~~l~D~~~~------v~----~iL~~-----~~~~~L~~l~ki~~~~ 369 (596)
.++.|.... +. .++.. ...+.+++.||.|.+.
T Consensus 77 V~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 77 VFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 555554322 11 22211 1346677778887653
No 230
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.84 E-value=2.2e-05 Score=78.52 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=61.3
Q ss_pred EEEeecCCCCCcchHHHhhhcccc--c----------------------------cccCCCCceeeeEEEEe---CCcEE
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHV--A----------------------------NVGATPGLTRSMQEVQL---DKNVK 310 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv--~----------------------------~vs~~PgtTr~~q~v~l---~~~i~ 310 (596)
+|+|+|++++|||||+.+|+..-- . ......|+|++...+.+ +..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999963210 0 00113588888766554 56899
Q ss_pred EEecCCCccCCCCChHHHHHhhccccccccCCCch--------------hHHHHHhhCC-cchhhhhhCCCCC
Q 007611 311 LLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG--------------PVKEILNRCP-ANLLISLYKLPSF 368 (596)
Q Consensus 311 LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~--------------~v~~iL~~~~-~~~L~~l~ki~~~ 368 (596)
|+||||..... ......+..++.+..+.|... ....++.... ++.++++||+|..
T Consensus 81 liDtpG~~~~~---~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFV---PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHH---HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 99999974221 122333445555554544322 0112223333 4566688999876
No 231
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.83 E-value=8.4e-06 Score=80.45 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.9
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
++|||+|+.++|||||+.+|.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999765
No 232
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.82 E-value=3.3e-05 Score=73.28 Aligned_cols=80 Identities=25% Similarity=0.275 Sum_probs=46.3
Q ss_pred ceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.++|+|||.+|||||||||++++..... ..++.|.......+.++ ..+.|+||||...... .-....+++++.+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK--SMVQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH--hhHHHhhcCCCEE
Confidence 3689999999999999999998765321 12222222222233333 3678999999642210 1122344556555
Q ss_pred cccCCC
Q 007611 338 EKLDDP 343 (596)
Q Consensus 338 ~~l~D~ 343 (596)
..+-|+
T Consensus 80 i~v~d~ 85 (170)
T cd04115 80 VFVYDV 85 (170)
T ss_pred EEEEEC
Confidence 544443
No 233
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=97.81 E-value=4.1e-05 Score=84.14 Aligned_cols=158 Identities=23% Similarity=0.244 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEE
Q 007611 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAF 210 (596)
Q Consensus 131 ~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f 210 (596)
+...|.++..+..++--+++.|+|.-|-..+..+.+-..| ..+..++++||+||+|.+..-.....+....---.+
T Consensus 96 ~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v----~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~v 171 (572)
T KOG1249|consen 96 VPGEYKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDV----GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMI 171 (572)
T ss_pred ChhhhhhhhhhhhhcccceEEeeecccCccccccchhhcc----cCCceEeeccccccccccccchHHHHHHhhccccee
Confidence 4455667777777774556677777766666666665555 345589999999999987532222222221100011
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccc--
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVA-- 288 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~-- 288 (596)
++... .|+- ....-.+...+++..+.|+++|+-.|-.... ..+.+-++|..||||||++|+|+....|
T Consensus 172 k~~~~---en~~--p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-----f~Gdf~lvg~tnvgks~~fn~ll~sD~c~~ 241 (572)
T KOG1249|consen 172 KAGGG---ENLN--PDFDFDHVDLIRAKTGYGIEELIVMLVDIVD-----FRGDFYLVGATNVGKSTLFNALLESDLCSV 241 (572)
T ss_pred ecccc---cCCC--cccchhhhhhhhhhhcccHHHHHHHhhheee-----ccCceeeeeecccchhhHHHHHhhhccccc
Confidence 11100 0000 0000011234556678999999877754222 2356889999999999999999987765
Q ss_pred ---------cccCCCCceeeeEE
Q 007611 289 ---------NVGATPGLTRSMQE 302 (596)
Q Consensus 289 ---------~vs~~PgtTr~~q~ 302 (596)
.+++.||||..+-.
T Consensus 242 ~~p~lVd~aT~~dwpgTtlsllk 264 (572)
T KOG1249|consen 242 NAPKLVDRATISDWPGTTLSLLK 264 (572)
T ss_pred cccceeeeeecccCCccccchhh
Confidence 35677788766443
No 234
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.80 E-value=2.5e-05 Score=81.32 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=36.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhcccccccc-CCC-------Cce-eeeEEEEe-----CCcEEEEecCCCccC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVG-ATP-------GLT-RSMQEVQL-----DKNVKLLDCPGVVML 320 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs-~~P-------gtT-r~~q~v~l-----~~~i~LiDTPGI~~~ 320 (596)
.++|+|||.+|+|||||||+|.+..+.... ..+ .++ .....+.+ .-++.|+||||+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 478999999999999999999998764442 111 111 11112222 236889999999754
No 235
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.80 E-value=0.00015 Score=70.59 Aligned_cols=96 Identities=27% Similarity=0.340 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhcC----
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREEL---- 205 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~----l~~Wl~yLr~~~---- 205 (596)
.|++++...+..+|+|++|+|+++...........+.. . .++|+++|+||+|++..+. +..+.++|...+
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-I-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-H-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57788888888999999999999865322222122222 2 3679999999999996543 344444333221
Q ss_pred -CeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 206 -PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 206 -ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..+.| .++|+..+.|.+.|+..|...
T Consensus 158 ~~~~~v----------------------i~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 158 FKNSPI----------------------IPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred cCCCCE----------------------EEEeccCCCCHHHHHHHHHhc
Confidence 11111 134556678899999888753
No 236
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.79 E-value=3.7e-05 Score=71.94 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=43.7
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCcee--eeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR--SMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr--~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++|+|+|.||||||||++.+....... ..+.|+. ....+.++. .+.|+||||...... -....+++++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~ad~~ 76 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS---MRDLYIKNGQGF 76 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccccc---hHHHHHhhCCEE
Confidence 579999999999999999999765432 1222221 112233332 467899999643321 122345566555
Q ss_pred ccc
Q 007611 338 EKL 340 (596)
Q Consensus 338 ~~l 340 (596)
..+
T Consensus 77 i~v 79 (163)
T cd04176 77 IVV 79 (163)
T ss_pred EEE
Confidence 443
No 237
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.79 E-value=7.3e-05 Score=79.60 Aligned_cols=96 Identities=27% Similarity=0.362 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcH-H---HHHHHHHh---CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCe
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCI-D---MEKMVMKA---GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPA 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~-~---le~~i~~~---~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~pt 207 (596)
+...+.+.++.+|+||+|+|+.++-.+... . +.+.+... ..++|+|||+||+||.+.+.+..+.++|.+.+..
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~ 304 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGK 304 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCC
Confidence 444556678899999999999865221111 1 22222221 1368999999999999887777788777665421
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
-.| .+|+....|++.|++.|..+
T Consensus 305 ~vi-----------------------~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 305 PVF-----------------------PISALTGEGLDELLYALAEL 327 (329)
T ss_pred cEE-----------------------EEEccCCcCHHHHHHHHHHH
Confidence 111 23445667888888887653
No 238
>PLN03110 Rab GTPase; Provisional
Probab=97.78 E-value=3.8e-05 Score=76.56 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=50.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+||||||||+.|.+..... ..++.|++.....+.++. .+.|+||||-.... ......+++++.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~---~~~~~~~~~~~~ 87 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR---AITSAYYRGAVG 87 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHH---HHHHHHhCCCCE
Confidence 34789999999999999999999876432 223334443334444443 67889999964321 122345566665
Q ss_pred ccccCC
Q 007611 337 IEKLDD 342 (596)
Q Consensus 337 i~~l~D 342 (596)
+..+-|
T Consensus 88 ~ilv~d 93 (216)
T PLN03110 88 ALLVYD 93 (216)
T ss_pred EEEEEE
Confidence 554444
No 239
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.78 E-value=3.6e-05 Score=72.38 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=46.8
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..+|+|+|.+||||||||+.|++.... .+..|.++... ..+.++ -.+.++||||..... ......+..++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---~~~~~~~~~~d~ 82 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR---SITQSYYRSANA 82 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH---HHHHHHhcCCCE
Confidence 478999999999999999999976542 12222222222 223332 246788999964221 122345566666
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+-|.
T Consensus 83 ~i~v~d~ 89 (169)
T cd04114 83 LILTYDI 89 (169)
T ss_pred EEEEEEC
Confidence 6555443
No 240
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.77 E-value=4.6e-05 Score=73.10 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=49.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
..++|++||.+|||||||++.|....... ..|.+..+...+.. .-.+.|+||||..... ......+++++.+..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~---~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT--TIPTIGFNVETVTYKNISFTVWDVGGQDKIR---PLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC--cCCccccceEEEEECCEEEEEEECCCChhhH---HHHHHHhCCCCEEEE
Confidence 35889999999999999999997544322 22322222222322 3468899999975321 112334677777766
Q ss_pred cCCC
Q 007611 340 LDDP 343 (596)
Q Consensus 340 l~D~ 343 (596)
+.|.
T Consensus 87 v~D~ 90 (175)
T smart00177 87 VVDS 90 (175)
T ss_pred EEEC
Confidence 6554
No 241
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.76 E-value=4.3e-05 Score=71.49 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=45.0
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCce---eeeEEEEeC----CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT---RSMQEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtT---r~~q~v~l~----~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
++|+|||.+|||||||+++|......-...+..++ .....+.++ ..+.++||||..... ......+..++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~~d 77 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS---DMVSNYWESPS 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH---HHHHHHhCCCC
Confidence 47999999999999999999854211122222222 111222221 368899999964321 11234556666
Q ss_pred cccccCCC
Q 007611 336 RIEKLDDP 343 (596)
Q Consensus 336 ~i~~l~D~ 343 (596)
.+..+-|.
T Consensus 78 ~ii~v~d~ 85 (164)
T cd04101 78 VFILVYDV 85 (164)
T ss_pred EEEEEEEC
Confidence 66555443
No 242
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.76 E-value=4.3e-05 Score=72.79 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=44.9
Q ss_pred ceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEe-------------CCcEEEEecCCCccCCCCChHH
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQL-------------DKNVKLLDCPGVVMLKSGENDA 327 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l-------------~~~i~LiDTPGI~~~~~~~~~~ 327 (596)
.++|+|||.+|||||||+|.+.+..... ..++.|.+-....+.+ .-.+.|+||||..... ...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~ 80 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR---SLT 80 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH---HHH
Confidence 4789999999999999999999765321 1122222111111221 1357899999953211 112
Q ss_pred HHHhhccccccccCC
Q 007611 328 SIALRNCKRIEKLDD 342 (596)
Q Consensus 328 ~~~L~~~~~i~~l~D 342 (596)
...+++++.+..+-|
T Consensus 81 ~~~~~~~~~~i~v~d 95 (180)
T cd04127 81 TAFFRDAMGFLLIFD 95 (180)
T ss_pred HHHhCCCCEEEEEEE
Confidence 334566665554444
No 243
>PTZ00416 elongation factor 2; Provisional
Probab=97.74 E-value=5e-05 Score=90.17 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=63.9
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceee---------------eE--EEEe-----------CCcEEEEe
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS---------------MQ--EVQL-----------DKNVKLLD 313 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~---------------~q--~v~l-----------~~~i~LiD 313 (596)
-.+|+|||++++|||||+++|+...-+......|.|+. .. ...+ +..|.|+|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 35899999999999999999997433222333444442 11 1111 23589999
Q ss_pred cCCCccCCCCChHHHHHhhccccccccCCCch----hHHHH---HhhCCcchhhhhhCCCCC
Q 007611 314 CPGVVMLKSGENDASIALRNCKRIEKLDDPVG----PVKEI---LNRCPANLLISLYKLPSF 368 (596)
Q Consensus 314 TPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~----~v~~i---L~~~~~~~L~~l~ki~~~ 368 (596)
|||...- ...+..+++.++.+..+.|... ....+ +.....+.++.+||+|..
T Consensus 99 tPG~~~f---~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVDF---SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCCHHhH---HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 9999753 2234566676666555544332 12223 333345678888999975
No 244
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.74 E-value=0.00013 Score=66.97 Aligned_cols=86 Identities=26% Similarity=0.369 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcch
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCST 214 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~ 214 (596)
.+...+..+..+|++++|+|+.++.+..+..+... ..++|+|+|+||+|+++.... .+.....|.+.
T Consensus 70 ~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~----- 136 (157)
T cd04164 70 GIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIA----- 136 (157)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc----ccccCCCceEE-----
Confidence 34456677789999999999999887666544433 357999999999999986543 11112223333
Q ss_pred hHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
.|+....|.+.|++.|.++
T Consensus 137 --------------------~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 137 --------------------ISAKTGEGLDELKEALLEL 155 (157)
T ss_pred --------------------EECCCCCCHHHHHHHHHHh
Confidence 3345667889999888764
No 245
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.73 E-value=0.00011 Score=69.14 Aligned_cols=63 Identities=27% Similarity=0.302 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCC----CCCcHH---HHHHHHHhC--------CCCceeEEeeccCCCCHHHHHHH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPL----GTRCID---MEKMVMKAG--------PDKHLVLLLNKIDLVPRESVEKW 197 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl----~sr~~~---le~~i~~~~--------~~K~lILVLNKiDLVp~e~l~~W 197 (596)
++.+++..+..+|+|++|+|+.++. +..... +...+.... .++|+|+|+||+|++....+..|
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 141 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEE 141 (176)
T ss_pred ccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHH
Confidence 3446677788899999999999884 111111 111222111 36899999999999988877777
No 246
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.72 E-value=9e-06 Score=83.06 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=37.0
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeC---CcEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLD---KNVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~---~~i~LiDTPGI~~ 319 (596)
.+|+|||.+|||||||||.+++.... ..+..|+.+ ...+.++ -.+.|+||||...
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~ 60 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP 60 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChh
Confidence 36999999999999999999876542 123333322 2233443 2577999999753
No 247
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.72 E-value=0.00022 Score=64.53 Aligned_cols=62 Identities=32% Similarity=0.402 Sum_probs=47.4
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHH
Q 007611 136 YKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLK 199 (596)
Q Consensus 136 ~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~ 199 (596)
...+...+..+|+|++|+|+..+.......+..... ..+.|+++|+||+|+++......|..
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~ 127 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLR--ERGKPVLLVLNKIDLLPEEEEEELLE 127 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCeEEEEEEccccCChhhHHHHHH
Confidence 456677888999999999999997765544222222 25799999999999999888777753
No 248
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.71 E-value=5.1e-05 Score=72.97 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=35.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceee-eEEEEeC----CcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS-MQEVQLD----KNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~-~q~v~l~----~~i~LiDTPGI~ 318 (596)
++|+|||.+|||||||+|+|.+.... ....|.+..+ ...+..+ -.+.|+||||..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence 47999999999999999999987642 1112221111 1122222 247889999954
No 249
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.71 E-value=0.00014 Score=79.33 Aligned_cols=100 Identities=25% Similarity=0.325 Sum_probs=71.3
Q ss_pred CCCccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 007611 126 KNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (596)
Q Consensus 126 ~~~~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ 205 (596)
...+.-.+.=...-|+.++.||+||+|+|+..|+......+... ...++|+++|+||+||++....... .+....
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~---~~~~~~~i~v~NK~DL~~~~~~~~~--~~~~~~ 351 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIEL---LPKKKPIIVVLNKADLVSKIELESE--KLANGD 351 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHh---cccCCCEEEEEechhcccccccchh--hccCCC
Confidence 44455566667778999999999999999999977666655552 2357999999999999987653322 122223
Q ss_pred CeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 206 PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 206 ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
+.+.+ |+..+.|.+.|.+.|.++..
T Consensus 352 ~~i~i-------------------------Sa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 352 AIISI-------------------------SAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ceEEE-------------------------EecCccCHHHHHHHHHHHHh
Confidence 34433 34556799999999988654
No 250
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.71 E-value=4.6e-05 Score=72.12 Aligned_cols=54 Identities=24% Similarity=0.304 Sum_probs=35.1
Q ss_pred EEeecCCCCCcchHHHhhhccccccccCCCCceee-eEEEEeCC---cEEEEecCCCcc
Q 007611 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS-MQEVQLDK---NVKLLDCPGVVM 319 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~-~q~v~l~~---~i~LiDTPGI~~ 319 (596)
|+|+|.+|||||||+|++.+.... ....|.+... ...+.++. .+.|+||||...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-EDYVPTVFENYSADVEVDGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcc
Confidence 589999999999999999987642 2112222111 11233332 578999999754
No 251
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.71 E-value=0.0001 Score=80.18 Aligned_cols=96 Identities=24% Similarity=0.306 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCC-----CCCCCcHHHHHHHHHhC---CCCceeEEeeccCCCCHHHHHHHHHHHHhcCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARD-----PLGTRCIDMEKMVMKAG---PDKHLVLLLNKIDLVPRESVEKWLKYLREELP 206 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARd-----Pl~sr~~~le~~i~~~~---~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~p 206 (596)
+...+.+.++.+|+||+|+|+.. |+... ..+.+.+.... .++|+|+|+||+||++.+.+..++..+.+.++
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~ 305 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALG 305 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhC
Confidence 44455668999999999999872 22111 12223333221 26899999999999987766666666655432
Q ss_pred ----eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 207 ----AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 207 ----tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
++ ++|+....|++.|++.|..+.+.
T Consensus 306 ~~~~Vi-------------------------~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 306 WEGPVY-------------------------LISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCCCEE-------------------------EEECCCCcCHHHHHHHHHHHhhh
Confidence 22 33445677888998888776653
No 252
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.70 E-value=5.5e-05 Score=73.24 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=50.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
..++|.++|.+|||||||++.|.........++.|.+. ..+.. +-.+.|+||||-... .......+++++.+.+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~---~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKI---RPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeE--EEEEECCEEEEEEECCCCHHH---HHHHHHHhccCCEEEE
Confidence 45889999999999999999998655444444444332 22332 346889999995321 1112234566776666
Q ss_pred cCCCc
Q 007611 340 LDDPV 344 (596)
Q Consensus 340 l~D~~ 344 (596)
+-|..
T Consensus 91 V~D~s 95 (181)
T PLN00223 91 VVDSN 95 (181)
T ss_pred EEeCC
Confidence 65543
No 253
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.69 E-value=4.6e-05 Score=67.62 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=45.9
Q ss_pred EEEeecCCCCCcchHHHhhhccccc---cccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVA---NVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~---~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
+|.|+|.+||||||||++|.+.... ......+.|.......+ ...+.+.|++|-......... .+..++.+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~---~~~~~d~~ 77 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQF---FLKKADAV 77 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHH---HHHHSCEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccc---hhhcCcEE
Confidence 5899999999999999999988754 12233344443333332 124788999998644222221 25666655
Q ss_pred cccCCC
Q 007611 338 EKLDDP 343 (596)
Q Consensus 338 ~~l~D~ 343 (596)
..+-|.
T Consensus 78 ilv~D~ 83 (119)
T PF08477_consen 78 ILVYDL 83 (119)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 544443
No 254
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.69 E-value=0.00027 Score=78.51 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCC-CCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEE
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDP-LGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAF 210 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdP-l~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f 210 (596)
...|.+++...+..+|++|.|+||..+ ..........++. ..+-+++|+|+||+||++.+.+..-+..++..+.....
T Consensus 127 H~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~ 205 (460)
T PTZ00327 127 HDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIA 205 (460)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhcc
Confidence 457889999999999999999999975 2222222222222 22346789999999999866543333333321100000
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
. .....++|+..+.|.+.|++.|..+.+
T Consensus 206 ~-----------------~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 206 D-----------------NAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred C-----------------CCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 0 001224556677889999999986554
No 255
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.69 E-value=5.9e-05 Score=86.23 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=67.9
Q ss_pred EEEeecCCCCCcchHHHhhhcccc-----cccc----------CCCCceeeeEEEE--e-CCcEEEEecCCCccCCCCCh
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHV-----ANVG----------ATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGEN 325 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv-----~~vs----------~~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~~~ 325 (596)
+|+|||+.++|||||+++|+...- ..+. ..-|+|....... . +..|.|+||||..... .
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---~ 79 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---G 79 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---H
Confidence 599999999999999999985311 0011 1235665543322 2 5689999999985431 2
Q ss_pred HHHHHhhccccccccCCCch----h---HHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHH
Q 007611 326 DASIALRNCKRIEKLDDPVG----P---VKEILNRCPANLLISLYKLPSFD-SVDDFLQKV 378 (596)
Q Consensus 326 ~~~~~L~~~~~i~~l~D~~~----~---v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~l 378 (596)
.+...++.++.+..+.|... . +...+...+.+.++++||+|... ..++.+..+
T Consensus 80 ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei 140 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEV 140 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHH
Confidence 34556777776665555432 1 22233344557788899999643 333443333
No 256
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.68 E-value=6.9e-05 Score=70.64 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=36.6
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~ 318 (596)
++|+|||.+|||||||++.+++...... .++.|.......+.++ ..+.++||||-.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3699999999999999999998764221 2222222222233333 257789999964
No 257
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.68 E-value=5.1e-05 Score=75.97 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=36.9
Q ss_pred eEEEeecCCCCCcchHHHhhhccccc-cccCCCCc-eeeeEEEEe---CCcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGL-TRSMQEVQL---DKNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~Pgt-Tr~~q~v~l---~~~i~LiDTPGI~ 318 (596)
++|+|||.+|||||||+|.+++.... .....++. +.....+.+ +..+.|+||||..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 36999999999999999999765542 22222221 222223333 3468899999987
No 258
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.67 E-value=2.3e-05 Score=73.41 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=58.8
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCC-hHHHHHhhccccccccCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGE-NDASIALRNCKRIEKLDD 342 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~-~~~~~~L~~~~~i~~l~D 342 (596)
+|+|||.+++|||||+++|.+... ...-|...+ ... .+|||||=....+.- ......-..|+.|..+.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~---~~~--~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIE---YYD--NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeE---ecc--cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 699999999999999999999764 122333333 222 359999987653321 122223346676666655
Q ss_pred CchhH----HHHHhhCCcchhhhhhCCCCCC
Q 007611 343 PVGPV----KEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 343 ~~~~v----~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
...+. -.+..-..++.+-++.|+|...
T Consensus 73 at~~~~~~pP~fa~~f~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 73 ATEPRSVFPPGFASMFNKPVIGVITKIDLPS 103 (143)
T ss_pred CCCCCccCCchhhcccCCCEEEEEECccCcc
Confidence 43221 1233344567777788888763
No 259
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.67 E-value=2.9e-05 Score=88.97 Aligned_cols=136 Identities=22% Similarity=0.217 Sum_probs=78.2
Q ss_pred eEEEeecCCCCCcchHHHhhhccccc--------cc------cCCCCceeeeEEEEe--------CCcEEEEecCCCccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVA--------NV------GATPGLTRSMQEVQL--------DKNVKLLDCPGVVML 320 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~--------~v------s~~PgtTr~~q~v~l--------~~~i~LiDTPGI~~~ 320 (596)
.+|+|||+.++|||||+++|+...-. .+ ....|+|...+.+.+ +..+.|+||||....
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 47999999999999999999853210 11 112366665544332 246899999999754
Q ss_pred CCCChHHHHHhhccccccccCCCchh-------HHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhcccccCCccc
Q 007611 321 KSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRGKLKKGGIVD 392 (596)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~D~~~~-------v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g~l~kggi~d 392 (596)
. ......++.|+.+..+.|.... ....+...+.+.++++||+|... +.+.....+....+. ....++.
T Consensus 88 ~---~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~-~~~~vi~ 163 (600)
T PRK05433 88 S---YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGI-DASDAVL 163 (600)
T ss_pred H---HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCC-CcceEEE
Confidence 2 2344567777776666554321 11122234556788899999653 334444444443332 1112445
Q ss_pred HHHHHHHHHH
Q 007611 393 VEAAARIILH 402 (596)
Q Consensus 393 i~aaa~~~L~ 402 (596)
+|+.....+.
T Consensus 164 iSAktG~GI~ 173 (600)
T PRK05433 164 VSAKTGIGIE 173 (600)
T ss_pred EecCCCCCHH
Confidence 5554444333
No 260
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.67 E-value=0.00015 Score=66.98 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=54.2
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC--CeEEEEcchhHHhhhc
Q 007611 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL--PAVAFKCSTQEQRANL 221 (596)
Q Consensus 144 e~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~--ptv~f~~~~~~~~~~~ 221 (596)
..+|+||+|+|+.+|.. +..+...+.. .++|+|+|+||+|+++...+..|...+...+ +++.
T Consensus 73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~------------ 136 (158)
T cd01879 73 EKPDLIVNVVDATNLER--NLYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVP------------ 136 (158)
T ss_pred CCCcEEEEEeeCCcchh--HHHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEE------------
Confidence 68999999999998643 2333333333 3799999999999987765555555554433 3333
Q ss_pred CcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 222 ~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
+|+..+.|.+.|+..|..+
T Consensus 137 -------------iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 137 -------------TSARKGEGIDELKDAIAEL 155 (158)
T ss_pred -------------EEccCCCCHHHHHHHHHHH
Confidence 3344567788888877654
No 261
>PTZ00369 Ras-like protein; Provisional
Probab=97.65 E-value=7.7e-05 Score=72.38 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=45.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.++|+|||.+|||||||++++.+.... ...++.|.+. ...+.++. .+.|+||||...... -....+++++.+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~---l~~~~~~~~d~i 80 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSA---MRDQYMRTGQGF 80 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchh---hHHHHhhcCCEE
Confidence 478999999999999999999976542 1222223222 11223332 467899999754321 122345555555
Q ss_pred cccC
Q 007611 338 EKLD 341 (596)
Q Consensus 338 ~~l~ 341 (596)
..+-
T Consensus 81 ilv~ 84 (189)
T PTZ00369 81 LCVY 84 (189)
T ss_pred EEEE
Confidence 4443
No 262
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.65 E-value=7.6e-05 Score=74.16 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=47.4
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEe--C--CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQL--D--KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l--~--~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
++|+|||.+|||||||||.|++.+..... .|.++.+. ..+.+ + -.+.|+||||..... ......+++++.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~~d~ 78 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR---SITRSYYRNSVG 78 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH---HHHHHHhcCCcE
Confidence 68999999999999999999987754332 23222221 12222 1 257899999964321 112334566666
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+-|.
T Consensus 79 iilv~D~ 85 (211)
T cd04111 79 VLLVFDI 85 (211)
T ss_pred EEEEEEC
Confidence 6555443
No 263
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.65 E-value=6.6e-05 Score=82.57 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=62.6
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc--cc------------c----------c------cCCCCceeeeEEEEe---C
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH--VA------------N----------V------GATPGLTRSMQEVQL---D 306 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k--v~------------~----------v------s~~PgtTr~~q~v~l---~ 306 (596)
+..++|+|+|++|+|||||+++|+... +. . + ....|+|.+.....+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 456899999999999999999998421 10 0 0 113588888766554 3
Q ss_pred CcEEEEecCCCccCCCCChHHHHHhhccccccccCCCch-------hH---HHHHhhCC-cchhhhhhCCCCCC
Q 007611 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG-------PV---KEILNRCP-ANLLISLYKLPSFD 369 (596)
Q Consensus 307 ~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v---~~iL~~~~-~~~L~~l~ki~~~~ 369 (596)
..+.|+||||...- .......+.+++.+..+.|... .. ..++..+. .+.++++||+|...
T Consensus 85 ~~i~iiDtpGh~~f---~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 85 YEVTIVDCPGHRDF---IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred eEEEEEECCCHHHH---HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 57899999994321 0112222344444443333211 11 12333344 34566789999753
No 264
>PRK13351 elongation factor G; Reviewed
Probab=97.65 E-value=0.0001 Score=85.92 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=69.8
Q ss_pred ceEEEeecCCCCCcchHHHhhhccc--cccccC---------------CCCceeeeEEEE--e-CCcEEEEecCCCccCC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCH--VANVGA---------------TPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~k--v~~vs~---------------~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~ 321 (596)
-.+|+|||.+|+|||||+++|+... +...+. ..|.|.....+. + +.++.|+||||.....
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 3579999999999999999998531 111111 123343322222 2 5579999999986431
Q ss_pred CCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHh
Q 007611 322 SGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVR 382 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~ 382 (596)
......++.++.+..+.|... .+...+.....+.++.+||+|... +....+..+....
T Consensus 88 ---~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l 153 (687)
T PRK13351 88 ---GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERF 153 (687)
T ss_pred ---HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 234456677666555544322 122234445567788889999764 4445555554443
No 265
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.64 E-value=0.0001 Score=69.98 Aligned_cols=99 Identities=22% Similarity=0.248 Sum_probs=58.9
Q ss_pred EEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccccCC
Q 007611 265 VGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDD 342 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D 342 (596)
|+|||.+|||||||++.|.+... ....++.|... ..+.. +..+.|+||||-.... ......+++++.+..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLR---KYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchh---HHHHHHHhhCCEEEEEEE
Confidence 78999999999999999997653 12223333321 12222 3468899999975321 222345777777776655
Q ss_pred Cchh-----H----HHHHhh-CCcchhhhhhCCCCC
Q 007611 343 PVGP-----V----KEILNR-CPANLLISLYKLPSF 368 (596)
Q Consensus 343 ~~~~-----v----~~iL~~-~~~~~L~~l~ki~~~ 368 (596)
.... + ..++.. ...+.+++.||+|..
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 77 SADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 4321 1 122222 234566677887753
No 266
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.64 E-value=5.2e-05 Score=82.98 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=61.2
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc--------------ccC------------------CCCceeeeEEEEe---CC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN--------------VGA------------------TPGLTRSMQEVQL---DK 307 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~--------------vs~------------------~PgtTr~~q~v~l---~~ 307 (596)
++|+|||++|+|||||+++|+...-.. .+. .-|+|.+.....+ +.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999997332100 111 1255666554443 45
Q ss_pred cEEEEecCCCccCCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCc-chhhhhhCCCCCC
Q 007611 308 NVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPA-NLLISLYKLPSFD 369 (596)
Q Consensus 308 ~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~-~~L~~l~ki~~~~ 369 (596)
++.|+||||...- .......+..++.+..+.|... ....++..+.. ..++.+||+|...
T Consensus 81 ~~~liDtPGh~~f---~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQY---TRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHH---HHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 7999999996421 1122334555555554444321 12234444444 3456889999764
No 267
>PLN03108 Rab family protein; Provisional
Probab=97.64 E-value=8.9e-05 Score=73.51 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=48.6
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.++|+|||.+|||||||+|.|++...... .++.|++.....+.++. .+.|+||||..... ......+++++.+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~---~~~~~~~~~ad~~ 82 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR---SITRSYYRGAAGA 82 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH---HHHHHHhccCCEE
Confidence 47899999999999999999998764332 22334443333344432 47799999965321 1122345555555
Q ss_pred cccCCC
Q 007611 338 EKLDDP 343 (596)
Q Consensus 338 ~~l~D~ 343 (596)
..+-|.
T Consensus 83 vlv~D~ 88 (210)
T PLN03108 83 LLVYDI 88 (210)
T ss_pred EEEEEC
Confidence 444443
No 268
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.63 E-value=5.4e-05 Score=88.62 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=64.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhccc-----------ccccc----CCCCceeeeEEEE----e---CCcEEEEecCCCcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCH-----------VANVG----ATPGLTRSMQEVQ----L---DKNVKLLDCPGVVM 319 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~k-----------v~~vs----~~PgtTr~~q~v~----l---~~~i~LiDTPGI~~ 319 (596)
-.+|+|||+.++|||||+++|+... ..... ...|+|.....+. + +.++.|+||||...
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 4689999999999999999997421 00000 0135555433211 1 45799999999975
Q ss_pred CCCCChHHHHHhhccccccccCCCch----h---HHHHHhhCCcchhhhhhCCCCC
Q 007611 320 LKSGENDASIALRNCKRIEKLDDPVG----P---VKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~D~~~----~---v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
.. ..+..+|+.++.+..+.|... . +...+.....+.++.+||+|..
T Consensus 99 f~---~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 99 FG---GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred cH---HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 32 345667788877766655432 1 1222223344567788999875
No 269
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.62 E-value=9.4e-05 Score=70.65 Aligned_cols=77 Identities=30% Similarity=0.282 Sum_probs=46.0
Q ss_pred EEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
+|++||.+|||||||+|++.+.... ...++.|..-....+.++ .++.|+||||...... .....+++++.+..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~ad~~il 78 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC---IASTYYRGAQAIII 78 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh---hHHHHhcCCCEEEE
Confidence 6899999999999999999987531 111222222112223332 3688999999753211 12334666666654
Q ss_pred cCCC
Q 007611 340 LDDP 343 (596)
Q Consensus 340 l~D~ 343 (596)
+-|.
T Consensus 79 v~d~ 82 (170)
T cd04108 79 VFDL 82 (170)
T ss_pred EEEC
Confidence 4443
No 270
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.61 E-value=0.00023 Score=76.07 Aligned_cols=97 Identities=23% Similarity=0.288 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC---CCCceeEEeeccCCCCHHHHH-HHHHHHHhcC--C
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG---PDKHLVLLLNKIDLVPRESVE-KWLKYLREEL--P 206 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~---~~K~lILVLNKiDLVp~e~l~-~Wl~yLr~~~--p 206 (596)
.+..++.+.++.+|++|+|+|+.++.+... ..+.+.+.... .++|+|+|+||+||++.+.+. .....+...+ +
T Consensus 225 gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~ 304 (335)
T PRK12299 225 GLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP 304 (335)
T ss_pred cHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC
Confidence 355677778899999999999987642111 11222222221 368999999999998765322 2222222222 3
Q ss_pred eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 207 tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+ .+|+....|++.|++.|.++..
T Consensus 305 i~-------------------------~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 305 VF-------------------------LISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred EE-------------------------EEEcCCCCCHHHHHHHHHHHHH
Confidence 22 2344567789999988877654
No 271
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.61 E-value=0.00026 Score=79.09 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcH-----HHHHHHHHh------------CCCCceeEEeeccCCCCHHHHHH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCI-----DMEKMVMKA------------GPDKHLVLLLNKIDLVPRESVEK 196 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~-----~le~~i~~~------------~~~K~lILVLNKiDLVp~e~l~~ 196 (596)
.+-.++.+.++.+|+||+|+|+.++..++++ .+.+.+... ..++|+|+|+||+||.+...+..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e 304 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE 304 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH
Confidence 3445667788999999999999653322221 122222111 13689999999999986554444
Q ss_pred HHH-HHHhc-CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 197 WLK-YLREE-LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 197 Wl~-yLr~~-~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
++. +|... ++++. +|+....|.+.|+..|.....
T Consensus 305 ~l~~~l~~~g~~Vf~-------------------------ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 305 FVRPELEARGWPVFE-------------------------VSAASREGLRELSFALAELVE 340 (500)
T ss_pred HHHHHHHHcCCeEEE-------------------------EECCCCCCHHHHHHHHHHHHH
Confidence 443 34332 23332 344556788888888876543
No 272
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.60 E-value=0.00052 Score=67.64 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCCHHH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRES 193 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp~e~ 193 (596)
..|..++...+..+|++|.|+||..........+..++... ++| +|+|+||+|+++.+.
T Consensus 76 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~ 135 (195)
T cd01884 76 ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYIVVFLNKADMVDDEE 135 (195)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHH
Confidence 35889999999999999999999987665555555555543 565 789999999986543
No 273
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.59 E-value=0.00052 Score=65.17 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHHHhcCCeEEEE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYLREELPAVAFK 211 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e---~l~~Wl~yLr~~~ptv~f~ 211 (596)
|.......+..+|++|+|+|+.++.+.........+.. .++|+|+|+||+||.... ....+.+.+. ++...+
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~- 154 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADPERVKQQIEDVLG--LDPSEA- 154 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC--CCcccE-
Confidence 55667778889999999999998765443332222222 478999999999997532 2233333322 111001
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
...|+..+.|++.|++.|...
T Consensus 155 ---------------------~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 155 ---------------------ILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred ---------------------EEeeccCCCCHHHHHHHHHhh
Confidence 134455677899998888754
No 274
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.59 E-value=0.00011 Score=69.55 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=35.4
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~ 318 (596)
.+|+|+|.+|||||||++.|.+..... ..++.+.+. ...+.++ -++.|+||||..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCch
Confidence 469999999999999999999865321 111111111 1123332 257899999974
No 275
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.59 E-value=8.2e-05 Score=74.77 Aligned_cols=75 Identities=23% Similarity=0.230 Sum_probs=45.3
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLD 341 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~ 341 (596)
++|+|||.+|||||||+|.++........++.|. ......+ ..++.|+||||-..... -....+++++.+..+-
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~--~~~~~~~~~~~l~iwDt~G~e~~~~---l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGG--AFYLKQWGPYNISIWDTAGREQFHG---LGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccce--EEEEEEeeEEEEEEEeCCCcccchh---hHHHHhccCCEEEEEE
Confidence 4699999999999999999998775332222221 1111111 23688999999754321 1223456666555443
Q ss_pred C
Q 007611 342 D 342 (596)
Q Consensus 342 D 342 (596)
|
T Consensus 76 D 76 (220)
T cd04126 76 D 76 (220)
T ss_pred E
Confidence 3
No 276
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.57 E-value=0.00013 Score=69.87 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=44.0
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCcee--eeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR--SMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr--~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
.++|+|||.+|||||||++.+....... ....|+. ....+.++ ..+.|+||||...... .....+++++.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---l~~~~~~~~d~ 76 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA---MRDQYMRCGEG 76 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH---HhHHHhhcCCE
Confidence 3689999999999999999999766421 1111211 11123332 2578899999754321 12234555555
Q ss_pred cccc
Q 007611 337 IEKL 340 (596)
Q Consensus 337 i~~l 340 (596)
+..+
T Consensus 77 ~ilv 80 (172)
T cd04141 77 FIIC 80 (172)
T ss_pred EEEE
Confidence 5433
No 277
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.56 E-value=0.00014 Score=72.74 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=43.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEEEEeC---CcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~ 320 (596)
..++|+|||.+|||||||+++++.... ....++.|++.....+..+ -.+.|+||||....
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhh
Confidence 468999999999999999999875543 3345566666554444332 36789999997543
No 278
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.56 E-value=0.00025 Score=67.02 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=59.0
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCCHHH---HHHHHHHHHhcCCeE-E
Q 007611 136 YKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES---VEKWLKYLREELPAV-A 209 (596)
Q Consensus 136 ~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp~e~---l~~Wl~yLr~~~ptv-~ 209 (596)
...+...+..+|++|+|+|+.+|.+... ......+....++.|+|+|.||+||.+... ++..+..+...++.+ .
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (166)
T cd01893 61 RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIET 140 (166)
T ss_pred hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccE
Confidence 3445566789999999999998865433 122233443345789999999999987543 233333333332211 1
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
+. ..|+..+.|++.|+..+..+
T Consensus 141 ~~----------------------e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 141 CV----------------------ECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred EE----------------------EeccccccCHHHHHHHHHHH
Confidence 11 23445677888888777654
No 279
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.56 E-value=0.00034 Score=75.20 Aligned_cols=86 Identities=26% Similarity=0.373 Sum_probs=55.8
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC-CCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG-PDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQE 216 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~-~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~ 216 (596)
.+..+..||+||+|+|+.+|..... ..+.+.+.... .++|+|+|+||+||++...+..+. ....+.+
T Consensus 262 tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~---~~~~~~i-------- 330 (351)
T TIGR03156 262 TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERLE---EGYPEAV-------- 330 (351)
T ss_pred HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHHH---hCCCCEE--------
Confidence 4456789999999999999975322 12234444332 368999999999999865543221 1112222
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
.+|+..+.|.+.|++.|.+
T Consensus 331 -----------------~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 331 -----------------FVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred -----------------EEEccCCCCHHHHHHHHHh
Confidence 2344567789999888765
No 280
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.55 E-value=0.00014 Score=86.50 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCcee---------------eeE--EEEe
Q 007611 243 AETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR---------------SMQ--EVQL 305 (596)
Q Consensus 243 ~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr---------------~~q--~v~l 305 (596)
.+.+.+++.+- ..-.+|+|||++++|||||+++|+...-+......|.|+ ... .+.+
T Consensus 6 ~~~~~~~~~~~------~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~ 79 (843)
T PLN00116 6 AEELRRIMDKK------HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYY 79 (843)
T ss_pred HHHHHHHhhCc------cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEe
Confidence 34555566541 234589999999999999999998543222223334433 211 1111
Q ss_pred -----------------CCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchh-------HHHHHhhCCcchhhh
Q 007611 306 -----------------DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLIS 361 (596)
Q Consensus 306 -----------------~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~-------v~~iL~~~~~~~L~~ 361 (596)
+..|.||||||...-. ..+..+|+.|+....+.|.... +...+.....+.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~---~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~ 156 (843)
T PLN00116 80 EMTDESLKDFKGERDGNEYLINLIDSPGHVDFS---SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLT 156 (843)
T ss_pred ecccccccccccccCCCceEEEEECCCCHHHHH---HHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEE
Confidence 3357899999986431 2344556666655444443321 222233344567888
Q ss_pred hhCCCCC
Q 007611 362 LYKLPSF 368 (596)
Q Consensus 362 l~ki~~~ 368 (596)
+||+|..
T Consensus 157 iNK~D~~ 163 (843)
T PLN00116 157 VNKMDRC 163 (843)
T ss_pred EECCccc
Confidence 8999876
No 281
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.54 E-value=0.00011 Score=81.46 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=63.5
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc--cc------------c----------cc------CCCCceeeeEEEEe---C
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH--VA------------N----------VG------ATPGLTRSMQEVQL---D 306 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k--v~------------~----------vs------~~PgtTr~~q~v~l---~ 306 (596)
+..++|+++|+.++|||||+.+|+..- +. . +. ...|+|.+.....+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 457899999999999999999997411 00 0 01 12477776655443 4
Q ss_pred CcEEEEecCCCccCCCCChHHHHHhhccccccccCCCch--------------hHHHHHhhCCcch-hhhhhCCCC
Q 007611 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG--------------PVKEILNRCPANL-LISLYKLPS 367 (596)
Q Consensus 307 ~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~--------------~v~~iL~~~~~~~-L~~l~ki~~ 367 (596)
..+.||||||...- .......+..++.+..+.|... ....++...+.+. ++.+||+|.
T Consensus 85 ~~i~lIDtPGh~~f---~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 85 YYFTIIDAPGHRDF---IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred eEEEEEECCChHHH---HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 57899999995421 1223334555555444444321 1223455555554 578899993
No 282
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.54 E-value=0.00065 Score=74.40 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEE
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPL-GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFK 211 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl-~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~ 211 (596)
..|.+++...+..+|++|+|+||+++. ..........+. ....+++|+|+||+||++.+.....+..+....... +.
T Consensus 91 ~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~-~~ 168 (406)
T TIGR03680 91 ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGT-VA 168 (406)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhc-cc
Confidence 567788888888999999999999875 322222223332 223467999999999998654433333332211000 00
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
......+.|+..+.|.+.|++.|.++.+
T Consensus 169 ----------------~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 169 ----------------ENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred ----------------CCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 0001113455667889999999988644
No 283
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.50 E-value=0.00082 Score=65.44 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH---HHHHHHHHHH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR---ESVEKWLKYL 201 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~---e~l~~Wl~yL 201 (596)
.|.......+..+|++|.|+|+.+........+...+.. .+.|+|+|+||+||+.. ..+..+..++
T Consensus 77 ~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 145 (194)
T cd01891 77 DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 466677788899999999999988543222222233322 37899999999999743 2355666665
No 284
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.46 E-value=0.00036 Score=64.88 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHHh-CCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~~-~~~K~lILVLNKiDLVp 190 (596)
+.......+..+|+||+|+|+.+|.... ...+.+.+... ..+.|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 3344455688999999999999985211 11233333211 14789999999999964
No 285
>COG2262 HflX GTPases [General function prediction only]
Probab=97.46 E-value=0.00034 Score=75.30 Aligned_cols=96 Identities=28% Similarity=0.379 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC-CCCceeEEeeccCCCCHHHHHHHHHHHHhcCC-e
Q 007611 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG-PDKHLVLLLNKIDLVPRESVEKWLKYLREELP-A 207 (596)
Q Consensus 131 ~~~~~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~-~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~p-t 207 (596)
.-.+|...|..+ ..||++|.|+||-+|..... ..+++.+...+ ..+|+|+|+||||+++.+.. +..+....| .
T Consensus 258 LV~AFksTLEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~~~ 333 (411)
T COG2262 258 LVEAFKSTLEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSPNP 333 (411)
T ss_pred HHHHHHHHHHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCCCe
Confidence 344555555544 35999999999999943222 22444444432 36899999999999987662 222333334 3
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
|. +|+..+.|.+.|.+.|.....
T Consensus 334 v~-------------------------iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 334 VF-------------------------ISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred EE-------------------------EEeccCcCHHHHHHHHHHHhh
Confidence 33 345667899999988876544
No 286
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.45 E-value=0.00018 Score=70.77 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=39.4
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCC----cEEEEecCCCccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK----NVKLLDCPGVVML 320 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~----~i~LiDTPGI~~~ 320 (596)
++|+|+|.+|||||||+|+|.+...........++.......... .+.++||+|...-
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH
Confidence 789999999999999999999877543332222222222222222 3788999998754
No 287
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.45 E-value=0.0008 Score=73.83 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHH----HHHHHHHHhc---
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPL-GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESV----EKWLKYLREE--- 204 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl-~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l----~~Wl~yLr~~--- 204 (596)
..|..++...+..+|++|+|+|++.|. .........++... ..+++|+|+||+||++.+.. ..+..++...
T Consensus 96 ~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 174 (411)
T PRK04000 96 ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAE 174 (411)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCC
Confidence 457777778888899999999999886 33333333333322 34579999999999975432 2222223221
Q ss_pred -CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 205 -LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 205 -~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.|.+ ++|+..+.|.+.|++.|.++.+
T Consensus 175 ~~~ii-------------------------~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 175 NAPII-------------------------PVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred CCeEE-------------------------EEECCCCcCHHHHHHHHHHhCC
Confidence 1222 3455667889999999987644
No 288
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.43 E-value=0.00099 Score=76.65 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCCHHHHH----HHHHHHHhc---
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRESVE----KWLKYLREE--- 204 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp~e~l~----~Wl~yLr~~--- 204 (596)
..|.+.....+..+|++|+|+||..++.........++... +.+ +|+|+||+|+++.+.+. .+..++...
T Consensus 62 e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~ 139 (614)
T PRK10512 62 EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFA 139 (614)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 45778888889999999999999987654444444444432 344 67999999999865433 333344321
Q ss_pred -CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 205 -LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 205 -~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.|.+ ++|+..+.|.+.|++.|..+..
T Consensus 140 ~~~ii-------------------------~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 140 EAKLF-------------------------VTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCcEE-------------------------EEeCCCCCCCHHHHHHHHHhhc
Confidence 2333 3344566788899988877654
No 289
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.43 E-value=0.00024 Score=69.02 Aligned_cols=55 Identities=27% Similarity=0.306 Sum_probs=35.8
Q ss_pred EEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCcc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVM 319 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~~ 319 (596)
+|+|||.+|||||||++.+.+...... .++.+.. ....+.++ ..+.|+||||-..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~-~~~~i~~~~~~~~l~i~Dt~G~~~ 60 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFEN-YVHDIFVDGLHIELSLWDTAGQEE 60 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceee-eEEEEEECCEEEEEEEEECCCChh
Confidence 699999999999999999998764321 1111111 11223333 3578999999743
No 290
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00061 Score=62.21 Aligned_cols=97 Identities=23% Similarity=0.286 Sum_probs=71.5
Q ss_pred CccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCe
Q 007611 128 RDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPA 207 (596)
Q Consensus 128 ~~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~pt 207 (596)
.+-+.+.+|..|--...++|||++|.-|.+|.+..++.|.... .+|+|=|++|+||.....++.-..+|++..-.
T Consensus 47 Ey~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-----~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~ 121 (148)
T COG4917 47 EYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-----VKKVIGVVTKADLAEDADISLVKRWLREAGAE 121 (148)
T ss_pred hhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccccccc-----ccceEEEEecccccchHhHHHHHHHHHHcCCc
Confidence 3556788999999999999999999999999999999876653 47799999999999655444433444443211
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
-.| .+++.+..|+++|..+|..
T Consensus 122 ~IF-----------------------~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 122 PIF-----------------------ETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ceE-----------------------EEeccCcccHHHHHHHHHh
Confidence 112 3445567789999988864
No 291
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.43 E-value=0.00044 Score=64.22 Aligned_cols=92 Identities=18% Similarity=0.141 Sum_probs=55.6
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHH---hCCCCceeEEeeccCCCCHHHHHHHHHHHHhc----CCe
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMK---AGPDKHLVLLLNKIDLVPRESVEKWLKYLREE----LPA 207 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~---~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~----~pt 207 (596)
......+..+|+||+|+|+.++.+.. ...+..++.. ...+.|+++|+||+||.+......+...+.-. .+.
T Consensus 60 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 139 (162)
T cd04157 60 GLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPW 139 (162)
T ss_pred HHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceE
Confidence 33445678999999999999885321 1123333221 12468999999999998653333333333211 111
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHH
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk 251 (596)
..| ..|+..+.|++.+++.|.
T Consensus 140 ~~~-----------------------~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 140 HIF-----------------------ASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred EEE-----------------------EeeCCCCCchHHHHHHHh
Confidence 111 345567889999988874
No 292
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.42 E-value=0.00019 Score=68.20 Aligned_cols=73 Identities=18% Similarity=0.094 Sum_probs=44.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++|+++|.+|||||||++++.+... +..++.|+.+.. .+.++ ..+.|+||||....... ....+++++.+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~a~~~ 75 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL---RPLCYPDTDVF 75 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccc---cccccCCCcEE
Confidence 4699999999999999999987543 334444443221 22233 35788999998543211 11244555555
Q ss_pred ccc
Q 007611 338 EKL 340 (596)
Q Consensus 338 ~~l 340 (596)
..+
T Consensus 76 i~v 78 (173)
T cd04130 76 LLC 78 (173)
T ss_pred EEE
Confidence 443
No 293
>PRK13768 GTPase; Provisional
Probab=97.42 E-value=0.0005 Score=70.50 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=63.5
Q ss_pred HHHHHHHhhh--cCeEEEEEeCCCCCCCCcHHHHHHHH---HhCCCCceeEEeeccCCCCHHHHHHHHHHHHh------c
Q 007611 136 YKELVKVIEV--SDVILEVLDARDPLGTRCIDMEKMVM---KAGPDKHLVLLLNKIDLVPRESVEKWLKYLRE------E 204 (596)
Q Consensus 136 ~kel~kvie~--sDVIleVlDARdPl~sr~~~le~~i~---~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~------~ 204 (596)
++.+.+.+.. +++|++|+|++.+..........++. ....++|+|+|+||+|+++.........++.. .
T Consensus 117 ~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~ 196 (253)
T PRK13768 117 GRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEE 196 (253)
T ss_pred HHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHH
Confidence 3444444444 89999999998755333322222221 11247999999999999987655444443332 1
Q ss_pred CCe-EEEEcchhHHhhhcCc--CcccCCCCCcccccccccCHHHHHHHHHhhhhcc
Q 007611 205 LPA-VAFKCSTQEQRANLGW--KSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (596)
Q Consensus 205 ~pt-v~f~~~~~~~~~~~~~--~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~ 257 (596)
+.. ..+. ..-...+.. ..........++|+....|.+.|++.|.++....
T Consensus 197 l~~~~~~~---~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 197 LKLEKGLQ---GLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred HhcccchH---HHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 100 0000 000000000 0000001223566677899999999999887643
No 294
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.41 E-value=0.0002 Score=84.00 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=61.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCC---------------CceeeeEEE--Ee-----CCcEEEEecCCCcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATP---------------GLTRSMQEV--QL-----DKNVKLLDCPGVVM 319 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P---------------gtTr~~q~v--~l-----~~~i~LiDTPGI~~ 319 (596)
-.+|+|||++++|||||+.+|+...-+...... |+|.....+ .+ +.+|.||||||...
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 357999999999999999999853211111111 333322211 11 45689999999975
Q ss_pred CCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCC
Q 007611 320 LKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
. ...+..+|+.++.+..+.|... .+...+.....+.++.+||+|..
T Consensus 100 f---~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 100 F---GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred h---HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 3 2345566777766555544322 12222222344567788999854
No 295
>CHL00071 tufA elongation factor Tu
Probab=97.39 E-value=0.0011 Score=72.59 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCCHHH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRES 193 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp~e~ 193 (596)
+.|++++...+..+|++|+|+||+..+......+..++... +.| +|+|+||+|+++.+.
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~ 145 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEE 145 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHH
Confidence 47899999999999999999999987765544555555433 567 778999999998554
No 296
>PLN03127 Elongation factor Tu; Provisional
Probab=97.37 E-value=0.0016 Score=72.20 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCCHHH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRES 193 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp~e~ 193 (596)
.|++++...+..+|++|+|+||+.+.......+..++... +.| +|+|+||+|+++.+.
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEeeccCCHHH
Confidence 4888888888899999999999988755555555555443 577 578999999997543
No 297
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.37 E-value=0.0013 Score=64.42 Aligned_cols=58 Identities=36% Similarity=0.562 Sum_probs=41.3
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHhC-CCCceeEEeeccCCCCHHHHH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKAG-PDKHLVLLLNKIDLVPRESVE 195 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~~-~~K~lILVLNKiDLVp~e~l~ 195 (596)
.....+..+|+|++|+|+++|...... .+.+++.... .++|+|+|+||+|+++.....
T Consensus 113 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~ 172 (204)
T cd01878 113 STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE 172 (204)
T ss_pred HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH
Confidence 334456789999999999998765432 2344444432 368999999999999876554
No 298
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.37 E-value=0.0011 Score=64.03 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=58.2
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHH----HHHHhc-CCeEEEEcchhH
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWL----KYLREE-LPAVAFKCSTQE 216 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl----~yLr~~-~ptv~f~~~~~~ 216 (596)
..+.++++++|+|+..|+......+.+++.. .+.|+++|+||+|+++........ .++... .+.+
T Consensus 103 ~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~-------- 172 (196)
T PRK00454 103 TRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI-------- 172 (196)
T ss_pred hCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE--------
Confidence 3345678999999999877655556666643 368899999999999865444333 333321 1222
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
+.|+.+..|.+.|++.|..+..
T Consensus 173 -----------------~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 -----------------LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred -----------------EEEcCCCCCHHHHHHHHHHHhc
Confidence 3345567889999999887653
No 299
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.37 E-value=0.00057 Score=63.54 Aligned_cols=96 Identities=19% Similarity=0.140 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCCH-HHHHHHHHHHHhcCCeEEE
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPR-ESVEKWLKYLREELPAVAF 210 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp~-e~l~~Wl~yLr~~~ptv~f 210 (596)
.|...+...+..+|+||+|+|+.+|-+... ..+..+......+.|+++|+||+|+... .....+...+.+.+....+
T Consensus 61 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01861 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFI 140 (161)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 345556677889999999999988753221 1222222222235899999999999543 2233344444433332222
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
..|+..+.|.+.|++.|.+
T Consensus 141 -----------------------~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 141 -----------------------ETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred -----------------------EEeCCCCCCHHHHHHHHHH
Confidence 2334567788999888765
No 300
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.36 E-value=0.00049 Score=64.49 Aligned_cols=58 Identities=22% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHHh-CCCCceeEEeeccCCCCHH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~~-~~~K~lILVLNKiDLVp~e 192 (596)
|.......+..+|++|+|+|+.++.... ...+..++... ..+.|+|+|+||+|+.+..
T Consensus 63 ~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~ 123 (167)
T cd04160 63 LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL 123 (167)
T ss_pred hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC
Confidence 4444556788999999999998874211 11223332211 1368999999999997653
No 301
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.35 E-value=0.00074 Score=63.36 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcH-H-HHHHHHHhC----CCCceeEEeeccCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCI-D-MEKMVMKAG----PDKHLVLLLNKIDLV 189 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~-~-le~~i~~~~----~~K~lILVLNKiDLV 189 (596)
.|.......+..+|++|+|+|+.+|.+.... . ...++.... .+.|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 61 RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 4555556788899999999999988642211 1 122222221 268999999999998
No 302
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.34 E-value=0.0011 Score=62.30 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEE
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFK 211 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~-~ptv~f~ 211 (596)
.|.......+..+|++|+|+|+.++.+... ......+....++.|+|+|+||+||.+.. ...+..+.... .|.+
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--- 136 (161)
T cd04124 61 RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLY--- 136 (161)
T ss_pred hhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEE---
Confidence 344455567889999999999988865322 12223344434578999999999996542 33344333221 2222
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..|+..+.|.+.+++.+..+
T Consensus 137 ----------------------~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 137 ----------------------YVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ----------------------EEeCCCCCCHHHHHHHHHHH
Confidence 23445667888888777654
No 303
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.32 E-value=0.00023 Score=75.62 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=40.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccc----cCCCCceee---eE--EEEe-----CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV----GATPGLTRS---MQ--EVQL-----DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~v----s~~PgtTr~---~q--~v~l-----~~~i~LiDTPGI~~~ 320 (596)
-.++|++||-.|.|||||||+|++..+... +..+..++. .. ...+ .-++.+|||||+...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 368999999999999999999999854322 122221111 11 1222 126899999999865
No 304
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.30 E-value=0.00036 Score=67.00 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=43.9
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceee-e-EEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS-M-QEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~-~-q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++|+|||-+|||||||++.+..... +..+..|+.. . ..+.++ -.+.|+||||-..... -....+++++.+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~a~~~ 76 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR---LRPLSYPQTDVF 76 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh---hhhhhcccCCEE
Confidence 6799999999999999999997653 1222222221 1 122332 3577999999864321 112245555554
Q ss_pred ccc
Q 007611 338 EKL 340 (596)
Q Consensus 338 ~~l 340 (596)
..+
T Consensus 77 ilv 79 (175)
T cd01874 77 LVC 79 (175)
T ss_pred EEE
Confidence 433
No 305
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.29 E-value=0.00076 Score=64.10 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHH-hCCCCceeEEeeccCCCCH
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMK-AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~-~~~~K~lILVLNKiDLVp~ 191 (596)
......+..+|++|+|+|+.++.+.. ...+..++.. ...+.|+|+|+||+||...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 33455688999999999999884321 1223333321 1247899999999999754
No 306
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.29 E-value=0.0006 Score=64.95 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=53.8
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCC---HHHHHHHHHHHH-hcCCeEEEE
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVP---RESVEKWLKYLR-EELPAVAFK 211 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp---~e~l~~Wl~yLr-~~~ptv~f~ 211 (596)
....+..+|+||+|+|+-++.+... ..+.+.+... ..+.|+|||.||+||.. .+.+..|+..-+ ...+...|
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~- 148 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ- 148 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEE-
Confidence 3456789999999999998853211 1222333211 13689999999999963 344555442111 11111111
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
..|+..+.|++++++.|.+
T Consensus 149 ----------------------~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 ----------------------PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred ----------------------EeeCCCCCChHHHHHHHhc
Confidence 3455677888888887753
No 307
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.29 E-value=0.00073 Score=62.81 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHHh-CCCCceeEEeeccCCCCHH
Q 007611 136 YKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 136 ~kel~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~~-~~~K~lILVLNKiDLVp~e 192 (596)
.......+..+|++|+|+|+.+|-+.. ...+..++... ..+.|+++|+||+|+....
T Consensus 57 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 57 RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 334455778899999999999874221 12233333321 2478999999999998744
No 308
>PRK00049 elongation factor Tu; Reviewed
Probab=97.29 E-value=0.0026 Score=69.52 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCcee-EEeeccCCCCHHH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLV-LLLNKIDLVPRES 193 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lI-LVLNKiDLVp~e~ 193 (596)
+.|++++...+..+|++|+|+||+.+.......+..++... +.|.+ +++||+|+++.+.
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~ 145 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCEEEEEEeecCCcchHH
Confidence 46889999999999999999999988665444555555443 57865 5899999996543
No 309
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.28 E-value=0.00027 Score=71.17 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.4
Q ss_pred EEEeecCCCCCcchHHHhhhc
Q 007611 264 TVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~ 284 (596)
+|+|||.+++|||||++.|+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999985
No 310
>PRK12740 elongation factor G; Reviewed
Probab=97.28 E-value=0.00044 Score=80.37 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=66.0
Q ss_pred ecCCCCCcchHHHhhhccccc--cccC---------------CCCceeeeEEEEe---CCcEEEEecCCCccCCCCChHH
Q 007611 268 IGLPNVGKSSLINSLKRCHVA--NVGA---------------TPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDA 327 (596)
Q Consensus 268 VG~PNVGKSSLINsL~~~kv~--~vs~---------------~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~ 327 (596)
||++|+|||||+|+|+...-. ..+. ..|+|.......+ +..+.|+||||.... ...+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~---~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF---TGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH---HHHH
Confidence 699999999999999643211 1111 1355544333222 568999999998632 1234
Q ss_pred HHHhhccccccccCCCchh-------HHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 328 SIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 328 ~~~L~~~~~i~~l~D~~~~-------v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
...++.++.+..+.|+... +...+...+.+.++++|++|... +....+..+....+
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~ 141 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLG 141 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Confidence 4566677766655554321 11223334557778889998753 34455555555433
No 311
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.27 E-value=0.00064 Score=65.75 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=56.1
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCC--CcHHHHHHHHH-hCCCCceeEEeeccCCC---CHHHHHHHHHHHHhcCCeEEEE
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGT--RCIDMEKMVMK-AGPDKHLVLLLNKIDLV---PRESVEKWLKYLREELPAVAFK 211 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~s--r~~~le~~i~~-~~~~K~lILVLNKiDLV---p~e~l~~Wl~yLr~~~ptv~f~ 211 (596)
.....+..+|+||+|+|+.+|-.. ....+.+++.. ...++|+|+|+||+|+. +.+.+..++....... .
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~-----~ 151 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTG-----S 151 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccc-----c
Confidence 344667899999999999988322 11123333321 11468999999999984 4444444332111000 0
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
+.. .+ .........|+..+.|.+.+++.|.+
T Consensus 152 ~~~------~~----~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 152 KGK------VG----VRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ccc------cC----CceeEEEEeecccCCChHHHHHHHHh
Confidence 000 00 00001234566678899999999865
No 312
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.25 E-value=0.00054 Score=67.80 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=37.8
Q ss_pred cceEEEeecCCCCCcchHHHhhh-ccccccccCCCCceeeeEEEEeC---CcEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK-RCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~-~~kv~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~ 318 (596)
..++|+|+|.+|||||||+|.++ +.......++.|++.....+..+ -.+.++||||-.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 45889999999999999997554 43222233444544433333332 257889999964
No 313
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.24 E-value=0.0021 Score=73.66 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCCHHHH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRESV 194 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp~e~l 194 (596)
..|.+.....+..+|++|+|+||.++..........++.. .+.| +|+|+||+||++.+.+
T Consensus 61 e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~ 121 (581)
T TIGR00475 61 EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEI 121 (581)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHH
Confidence 4578888888899999999999998653332222233332 2566 9999999999987643
No 314
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.22 E-value=0.0017 Score=60.86 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=50.8
Q ss_pred hcCeEEEEEeCCCCCCCCcH---HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHh-cCCeEEEEcchhHHhhh
Q 007611 145 VSDVILEVLDARDPLGTRCI---DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLRE-ELPAVAFKCSTQEQRAN 220 (596)
Q Consensus 145 ~sDVIleVlDARdPl~sr~~---~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~-~~ptv~f~~~~~~~~~~ 220 (596)
.+|++|+|+|+.++.+.... .+.+.+.....+.|+|+|+||+|+.....+..-..+... ..+.+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------------ 146 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVL------------ 146 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceE------------
Confidence 36999999999988653211 222333332237899999999999876554431121111 11221
Q ss_pred cCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 221 ~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
..|+..+.|.+.|++.|..
T Consensus 147 -------------~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 147 -------------KISTLTEEGVDEVKNKACE 165 (168)
T ss_pred -------------EEEecccCCHHHHHHHHHH
Confidence 3455677889999887754
No 315
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.21 E-value=0.0005 Score=65.94 Aligned_cols=54 Identities=28% Similarity=0.276 Sum_probs=34.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC---CcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~---~~i~LiDTPGI~ 318 (596)
++|+|+|.+||||||||.+++..... ..+..|+... ..+.++ -.+.|+||||-.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 60 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCch
Confidence 67999999999999999998865421 1111111111 112232 357899999964
No 316
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.20 E-value=0.0031 Score=58.92 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=35.6
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
...+..+|++|.|+|+.++...........+.. .++|+++|+||+|+...
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccc
Confidence 346678999999999988653322223333433 47899999999999853
No 317
>PRK04213 GTP-binding protein; Provisional
Probab=97.19 E-value=0.0025 Score=62.08 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=53.8
Q ss_pred HhhhcCeEEEEEeCCCCCCCC-----------cHHHHHHHHHhCCCCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeE
Q 007611 142 VIEVSDVILEVLDARDPLGTR-----------CIDMEKMVMKAGPDKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAV 208 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr-----------~~~le~~i~~~~~~K~lILVLNKiDLVp~e--~l~~Wl~yLr~~~ptv 208 (596)
.+..+|+|+.|+|+....... ...+...+.. .+.|+|+|+||+||.+.. .+..|...+.-..+..
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 164 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWR 164 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccc
Confidence 456789999999987543210 1223333332 379999999999998754 4445554443210100
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.+ ......+|+..+ |++.|++.|....
T Consensus 165 ~~------------------~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 165 QW------------------QDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred cc------------------CCcEEEEecccC-CHHHHHHHHHHhh
Confidence 00 001124556678 9999998887644
No 318
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.19 E-value=0.0016 Score=59.35 Aligned_cols=57 Identities=18% Similarity=0.073 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC-CCCceeEEeeccCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG-PDKHLVLLLNKIDLV 189 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~-~~K~lILVLNKiDLV 189 (596)
..+.......+..+|++|+|+|+.+|-+... ..+...+.... .+.|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 60 ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 3455566778889999999999988643211 11222233222 468999999999997
No 319
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.18 E-value=0.0015 Score=61.37 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCC-cHHHHHHHHHhC-CCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEE
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTR-CIDMEKMVMKAG-PDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVA 209 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr-~~~le~~i~~~~-~~K~lILVLNKiDLVp~e-~l~~Wl~yLr~~~ptv~ 209 (596)
..|.......+..+|++|+|+|+.++.+.. .......+.... .+.|+|+|.||+|+.+.. ....+...+.+......
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~ 146 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYY 146 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeE
Confidence 346666678899999999999998774321 122223333322 257889999999998543 33344555555444333
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
+. .|+..+.|.+.+++.|..
T Consensus 147 ~~-----------------------~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 147 LE-----------------------TSAKESDNVEKLFLDLAC 166 (169)
T ss_pred EE-----------------------eeCCCCCCHHHHHHHHHH
Confidence 33 233456788888887764
No 320
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.00038 Score=74.30 Aligned_cols=59 Identities=27% Similarity=0.390 Sum_probs=40.0
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccc------cCCCCceeeeEE--EEeC-----CcEEEEecCCCccC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANV------GATPGLTRSMQE--VQLD-----KNVKLLDCPGVVML 320 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~v------s~~PgtTr~~q~--v~l~-----~~i~LiDTPGI~~~ 320 (596)
.++++|||-.+.|||||||+|....+..- ...|--|..+.. +.+. -++.++||||+...
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 58999999999999999999998754321 112222322222 2221 26889999999865
No 321
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.17 E-value=0.0013 Score=61.32 Aligned_cols=97 Identities=14% Similarity=0.003 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAF 210 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~-ptv~f 210 (596)
|.......+..+|+||+|+|+.++.+.. ...+..++... ..++|+|+|+||+||...........++.... +...
T Consensus 56 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~- 134 (158)
T cd04151 56 IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRT- 134 (158)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCc-
Confidence 3333445688999999999998763211 11222222211 13689999999999975432333333332111 0000
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHH
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk 251 (596)
.....+|+..+.|++.|++.|.
T Consensus 135 -------------------~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 135 -------------------WSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred -------------------EEEEEeeccCCCCHHHHHHHHh
Confidence 0122456677889999988774
No 322
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.17 E-value=0.0016 Score=61.09 Aligned_cols=58 Identities=17% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCC-CcHHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGT-RCIDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~s-r~~~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
.|.......+..+|++|.|+|+.+|.+. ........+... ..+.|+|+|.||+||...
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 3445556777889999999999988542 122233333332 246789999999999754
No 323
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.17 E-value=0.0007 Score=63.08 Aligned_cols=72 Identities=31% Similarity=0.386 Sum_probs=44.1
Q ss_pred EEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
+|+|||-++||||||++.|.+..... ..++.|.......+..+ -.+.|+||||-... ..-....+++++.+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---~~~~~~~~~~~~~~i 76 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF---DSLRDIFYRNSDAII 76 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG---HHHHHHHHTTESEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 58999999999999999999865321 22233333333334432 35889999996422 111234455655554
No 324
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.17 E-value=0.0026 Score=61.03 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=42.2
Q ss_pred hcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHh
Q 007611 145 VSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLRE 203 (596)
Q Consensus 145 ~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~----l~~Wl~yLr~ 203 (596)
.+|++|+|+|++.++......+.+++.. .++|+++|+||+|+++... +..|...|..
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred hhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 4689999999999887766666666654 3789999999999997643 4444555544
No 325
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.16 E-value=0.0013 Score=63.78 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCC----HH--HHHHHHHHHHhcCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP----RE--SVEKWLKYLREELP 206 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp----~e--~l~~Wl~yLr~~~p 206 (596)
|..-....+..+|+||+|+|+.++.+... ..++. +....+....|||.||+||+. .+ .+..+...+.+.+.
T Consensus 62 ~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~-~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~ 140 (182)
T cd04128 62 FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQ-ARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMK 140 (182)
T ss_pred HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHH-HHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcC
Confidence 43334456789999999999988865433 22333 333223334478999999963 11 22334444444443
Q ss_pred eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 207 tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
...| ..|+..+.|++.|++.|-...
T Consensus 141 ~~~~-----------------------e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 141 APLI-----------------------FCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred CEEE-----------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 2222 234556788899988776543
No 326
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.15 E-value=0.0014 Score=72.14 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCC-----CCCCcHHHHHHHHHhC---CCCceeEEeeccCCCCH-HHHHHHHHHHHhcC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDP-----LGTRCIDMEKMVMKAG---PDKHLVLLLNKIDLVPR-ESVEKWLKYLREEL 205 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdP-----l~sr~~~le~~i~~~~---~~K~lILVLNKiDLVp~-e~l~~Wl~yLr~~~ 205 (596)
+..++.+-++.+|+||+|+|+-++ +... ..+.+.+.... .++|.|+|+||+||... +.+..|..++. .
T Consensus 226 Lg~~fLrhier~~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--~ 302 (424)
T PRK12297 226 LGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--P 302 (424)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--C
Confidence 445566678899999999999543 2211 11222332221 36899999999998543 23444444332 2
Q ss_pred CeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 206 PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 206 ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
+.+. +|+....|++.|++.|..+..
T Consensus 303 ~i~~-------------------------iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 303 KVFP-------------------------ISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred cEEE-------------------------EeCCCCCCHHHHHHHHHHHHH
Confidence 3222 344567789999988876654
No 327
>PRK12736 elongation factor Tu; Reviewed
Probab=97.13 E-value=0.0046 Score=67.50 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCCHH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRE 192 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp~e 192 (596)
+.|..+....+..+|++|.|+|+..+.......+..++... +.| +|+|+||+|+++.+
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~~IvviNK~D~~~~~ 144 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYLVVFLNKVDLVDDE 144 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCEEEEEEEecCCcchH
Confidence 46778888888999999999999987655555555555543 566 67899999999654
No 328
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.12 E-value=0.0016 Score=63.18 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC-CCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEE
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG-PDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVA 209 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~-~~K~lILVLNKiDLVp~e-~l~~Wl~yLr~~~ptv~ 209 (596)
..|.......+..+|++|+|+|+.++.+... ......+.... .+.|+|+|+||+||.... ....+...+...+..-.
T Consensus 61 ~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~ 140 (191)
T cd04112 61 ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPF 140 (191)
T ss_pred HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeE
Confidence 3455555667788999999999987643211 11122233322 367999999999997432 22223333433332211
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
+ ..|+..+.|++.|+..|.+.+..
T Consensus 141 ~-----------------------e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 141 M-----------------------ETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred E-----------------------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 2 23345677899999988776543
No 329
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.10 E-value=0.0018 Score=62.54 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHH-hCCCCceeEEeeccCCCC
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMK-AGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~-~~~~K~lILVLNKiDLVp 190 (596)
....+..+|++|+|+|+.+|-... ...+.++... ...++|+|+|+||+|+..
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 344577899999999998873211 1122222211 113689999999999964
No 330
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.10 E-value=0.0046 Score=56.96 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=58.3
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc----CCeEEEEcchh
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE----LPAVAFKCSTQ 215 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~----~ptv~f~~~~~ 215 (596)
...-+.++.++.|+|+..+.......+.+++... +.|+++|+||+|+++.+....+...+... .+...+
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 148 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI----- 148 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce-----
Confidence 3444567899999999988655555566666543 57999999999998776544444333321 111111
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
.+.|+.+..|.+.+++.|..+
T Consensus 149 -----------------~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 149 -----------------ILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred -----------------EEEecCCCCCHHHHHHHHHHh
Confidence 133445667888999888764
No 331
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.09 E-value=0.00025 Score=67.59 Aligned_cols=65 Identities=26% Similarity=0.392 Sum_probs=44.1
Q ss_pred hhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEE
Q 007611 143 IEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFK 211 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~--~ptv~f~ 211 (596)
-+..|+||.|+||... .|+..+-..+... ++|+|+||||+|++.+..+.-....|.+. .|++++.
T Consensus 76 ~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~s 142 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNL--ERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVS 142 (156)
T ss_dssp HTSSSEEEEEEEGGGH--HHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEB
T ss_pred hcCCCEEEEECCCCCH--HHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEE
Confidence 3789999999999874 4666666666554 79999999999999876422222233322 4666664
No 332
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.09 E-value=0.00098 Score=64.62 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=45.9
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|++||.+|||||||++.+++..... ..++-|..-....+.++ -.+.|+||+|-..-.. -....+++++.+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~---~~~~~~~~a~~ii 77 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN---MLPLVCNDAVAIL 77 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH---hhHHHCcCCCEEE
Confidence 479999999999999999998765321 22222322222334443 2578899999753211 1223456666554
Q ss_pred ccCC
Q 007611 339 KLDD 342 (596)
Q Consensus 339 ~l~D 342 (596)
.+-|
T Consensus 78 lv~D 81 (182)
T cd04128 78 FMFD 81 (182)
T ss_pred EEEE
Confidence 4433
No 333
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.09 E-value=0.0019 Score=60.27 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHH---HHHhCCCCceeEEeeccCCCCHH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~---i~~~~~~K~lILVLNKiDLVp~e 192 (596)
+..-....+..+|+||+|.|+.++.+.. .+..+ +.....+.|+|+|.||+||.+..
T Consensus 65 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASFE--NCSRWVNKVRTASKHMPGVLVGNKMDLADKA 123 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 3344567788999999999998874321 22222 22223468999999999997654
No 334
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.07 E-value=0.0017 Score=59.23 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYL 201 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yL 201 (596)
.|.......+..+|+||+|+|+.++..... ..+..++... ..++|+++|+||+|+.+......+...+
T Consensus 56 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 126 (159)
T cd04159 56 RFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQM 126 (159)
T ss_pred hHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHh
Confidence 344556677889999999999988643211 1122222111 1368999999999998765555444444
No 335
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.04 E-value=0.00065 Score=65.44 Aligned_cols=80 Identities=24% Similarity=0.332 Sum_probs=53.8
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
.+..+|.++|.+|+|||||++.|.......+.++-|... ..+.. +..+.+.|.+|=..... --...+.+++.+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~--~~i~~~~~~~~~~d~gG~~~~~~---~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI--EEIKYKGYSLTIWDLGGQESFRP---LWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE--EEEEETTEEEEEEEESSSGGGGG---GGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCccccccc--ceeeeCcEEEEEEeccccccccc---cceeeccccceeE
Confidence 357899999999999999999999877655555545432 33333 44789999999643211 0112455677777
Q ss_pred ccCCCc
Q 007611 339 KLDDPV 344 (596)
Q Consensus 339 ~l~D~~ 344 (596)
++.|..
T Consensus 87 fVvDss 92 (175)
T PF00025_consen 87 FVVDSS 92 (175)
T ss_dssp EEEETT
T ss_pred EEEecc
Confidence 776654
No 336
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.03 E-value=0.0011 Score=64.05 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=34.6
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceee-eEEEEeC---CcEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS-MQEVQLD---KNVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~-~q~v~l~---~~i~LiDTPGI~~ 319 (596)
.+|+|+|.+|||||||+|.|....... ...|.+... ...+.++ ..+.++||||...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEE 61 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChh
Confidence 479999999999999999998544321 111211111 1122222 3477899999753
No 337
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.03 E-value=0.0021 Score=60.45 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHH-hCCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~-~~~~K~lILVLNKiDLVp~ 191 (596)
|......++..+|+||+|+|+.++.+... ..+.+++.. ...+.|++||.||+||.+.
T Consensus 57 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 57 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 44444567899999999999987643211 112222221 1135899999999999643
No 338
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.01 E-value=0.0024 Score=59.25 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHH----HHhCCCCceeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV----MKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i----~~~~~~K~lILVLNKiDLVp 190 (596)
..|.......+..+|+||+|+|+++|.+.. .+.+++ ....++.|+++|.||+|+.+
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 60 ERFRSITSSYYRGAVGALLVYDITNRESFE--NLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 345566677888999999999999886432 222222 22225789999999999976
No 339
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.00 E-value=0.0042 Score=61.49 Aligned_cols=57 Identities=21% Similarity=0.319 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
..|..++...+..+|++|+|+|+..+.......+..++... ..+++|+|+||+|++.
T Consensus 88 ~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~D~~~ 144 (208)
T cd04166 88 EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKMDLVD 144 (208)
T ss_pred HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEchhccc
Confidence 34667777788999999999999988654433333444332 2345788999999985
No 340
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.00 E-value=0.0014 Score=63.41 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=35.0
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCce-ee-eEEEEeC---CcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT-RS-MQEVQLD---KNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtT-r~-~q~v~l~---~~i~LiDTPGI~ 318 (596)
++|++||-+|||||||++.+.+.... ..+..|. .. ...+.++ -.+.|+||||-.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSGSP 60 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCCch
Confidence 57999999999999999999976531 1111111 11 1123333 257799999964
No 341
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.99 E-value=0.002 Score=71.52 Aligned_cols=84 Identities=26% Similarity=0.374 Sum_probs=56.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhH
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQE 216 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~ 216 (596)
+..+..+..+|+||+|+|+.+|.+.... ..+.. ..++|+|+|+||+||++..... .....+.+
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~---~~l~~-~~~~piiiV~NK~DL~~~~~~~-----~~~~~~~i-------- 348 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDD---EILEE-LKDKPVIVVLNKADLTGEIDLE-----EENGKPVI-------- 348 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHH---HHHHh-cCCCCcEEEEEhhhccccchhh-----hccCCceE--------
Confidence 3455678899999999999998764422 22222 3478999999999998754432 11112222
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.+|+..+.|.+.|++.|....
T Consensus 349 -----------------~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 349 -----------------RISAKTGEGIDELREAIKELA 369 (449)
T ss_pred -----------------EEEeeCCCCHHHHHHHHHHHH
Confidence 234456778999999987654
No 342
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.97 E-value=0.0031 Score=59.63 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHH---H-hCCCCceeEEeeccCCCCH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVM---K-AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~---~-~~~~K~lILVLNKiDLVp~ 191 (596)
.|.......+..+|+||+|+|+.+|.+.. .+..++. . ..++.|+|+|.||+|+.+.
T Consensus 65 ~~~~~~~~~~~~~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 65 SFRSITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 45555677888999999999999875432 2333332 2 2247899999999999843
No 343
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0029 Score=71.78 Aligned_cols=121 Identities=16% Similarity=0.181 Sum_probs=73.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCC---------------------Cc-------eee-------------
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP---------------------GL-------TRS------------- 299 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P---------------------gt-------Tr~------------- 299 (596)
..++|+|.|.+|.||||+||+++..++.+-+..| |. |..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 5789999999999999999999987765433322 20 000
Q ss_pred ---eEEEEe--------CCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchh----HHHHHhhCC--cchhh-h
Q 007611 300 ---MQEVQL--------DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP----VKEILNRCP--ANLLI-S 361 (596)
Q Consensus 300 ---~q~v~l--------~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~----v~~iL~~~~--~~~L~-~ 361 (596)
+-.|.+ -..|.|+|+||+.........+......++.+..+.+.... ...++.... ++.|. +
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIl 267 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFIL 267 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEE
Confidence 001111 13689999999987754455555556666666666554332 223444332 33443 4
Q ss_pred hhCCCCCCCHHHHHHHHHHH
Q 007611 362 LYKLPSFDSVDDFLQKVATV 381 (596)
Q Consensus 362 l~ki~~~~~~~e~L~~la~~ 381 (596)
.|+-|...+..+..+.+.+.
T Consensus 268 nnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 268 NNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred echhhhhcccHHHHHHHHHH
Confidence 45567777766666666555
No 344
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=96.97 E-value=0.0019 Score=61.33 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=55.0
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCC--CcHHHHHHHHHh-CCCCceeEEeeccCCCCH---HHHHHHHHHHHhcC-CeEEE
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGT--RCIDMEKMVMKA-GPDKHLVLLLNKIDLVPR---ESVEKWLKYLREEL-PAVAF 210 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~s--r~~~le~~i~~~-~~~K~lILVLNKiDLVp~---e~l~~Wl~yLr~~~-ptv~f 210 (596)
.+...+..+|++|+|+|+.+|.+. ....+..++... ..+.|+|||.||+||... +.+..|+.+..... ..+.|
T Consensus 59 ~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
T cd04158 59 LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYI 138 (169)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEE
Confidence 344567889999999999887422 122233333221 134799999999999643 33444432221100 01122
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
. ..|+..+.|++.++..|.+.
T Consensus 139 ~----------------------~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 139 Q----------------------GCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred E----------------------eCcCCCCCCHHHHHHHHHHH
Confidence 1 23556778999999888653
No 345
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.96 E-value=0.0021 Score=61.56 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp 190 (596)
|.......+..+|+||+|+|+-+|.+... ..+..++... ..+.|++||+||+||..
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 33334555789999999999988743211 1222222211 13579999999999964
No 346
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.96 E-value=0.002 Score=63.98 Aligned_cols=97 Identities=19% Similarity=0.070 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHhC----CCCceeEEeeccCCCCH-HHHHHHHHHHHhcCCeE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKAG----PDKHLVLLLNKIDLVPR-ESVEKWLKYLREELPAV 208 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~~----~~K~lILVLNKiDLVp~-e~l~~Wl~yLr~~~ptv 208 (596)
|..-+...+..+|+||+|+|+.+|.+.... .....+.... .+.|+|||.||+||... .........|.+.+...
T Consensus 63 ~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~ 142 (215)
T cd04109 63 GGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME 142 (215)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE
Confidence 333444567899999999999988543221 1222232221 23468999999999743 22222222233333322
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.| .+|+..+.|++.|++.|.+..
T Consensus 143 ~~-----------------------~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 143 SC-----------------------LVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred EE-----------------------EEECCCCCCHHHHHHHHHHHH
Confidence 22 234456778888888876543
No 347
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.95 E-value=0.0017 Score=63.52 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=46.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||-++||||||++++...... ...+++|..-....+.++ -.+.|+||||-..... -....+++++.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~---l~~~~~~~ad~ 81 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT---IFRSYSRGAQG 81 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH---HHHHHhcCCCE
Confidence 3588999999999999999999975431 111222322112223333 2577899999753321 12234456665
Q ss_pred ccccCC
Q 007611 337 IEKLDD 342 (596)
Q Consensus 337 i~~l~D 342 (596)
+..+-|
T Consensus 82 illVfD 87 (189)
T cd04121 82 IILVYD 87 (189)
T ss_pred EEEEEE
Confidence 554433
No 348
>PTZ00099 rab6; Provisional
Probab=96.95 E-value=0.0024 Score=61.77 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCe
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPA 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp~-----e~l~~Wl~yLr~~~pt 207 (596)
|.......+..+|++|+|+|+-++.+... ..+..++....++.|+|||.||+||... +....|.. .+..
T Consensus 42 ~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~----~~~~ 117 (176)
T PTZ00099 42 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQ----EYNT 117 (176)
T ss_pred hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHH----HcCC
Confidence 33344556789999999999988754322 2344444333346788999999999642 22333322 2222
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
..|. .|+..+.|++.++..|....+
T Consensus 118 ~~~e-----------------------~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 118 MFHE-----------------------TSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred EEEE-----------------------EECCCCCCHHHHHHHHHHHHH
Confidence 2232 344567889999988876654
No 349
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.94 E-value=0.0029 Score=65.84 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=78.7
Q ss_pred ccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCe
Q 007611 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPA 207 (596)
Q Consensus 129 ~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l-~~Wl~yLr~~~pt 207 (596)
+.....+...-|..++.||+|+.|+||.+|-...++.+.+.+... .+.|-|||+||+|.++...+ ......|.+- +
T Consensus 139 ~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g--~ 215 (379)
T KOG1423|consen 139 HHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNG--E 215 (379)
T ss_pred HHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhcccc--c
Confidence 334445667889999999999999999887666777777776654 47899999999999887532 2222222211 1
Q ss_pred EEE-Ec----------chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhcccc
Q 007611 208 VAF-KC----------STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEI 259 (596)
Q Consensus 208 v~f-~~----------~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~ 259 (596)
+.- +. ++...++.-||.. -+..+++|+..+.|+++|.++|-..++....
T Consensus 216 l~~~kl~v~~~f~~~p~~~~~~~~~gwsh---fe~vF~vSaL~G~GikdlkqyLmsqa~~gpW 275 (379)
T KOG1423|consen 216 LAKLKLEVQEKFTDVPSDEKWRTICGWSH---FERVFMVSALYGEGIKDLKQYLMSQAPPGPW 275 (379)
T ss_pred cchhhhhHHHHhccCCcccccccccCccc---ceeEEEEecccccCHHHHHHHHHhcCCCCCC
Confidence 110 00 0000111112211 1246688999999999999998776654433
No 350
>PRK12735 elongation factor Tu; Reviewed
Probab=96.93 E-value=0.0064 Score=66.41 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCcee-EEeeccCCCCHHH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLV-LLLNKIDLVPRES 193 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lI-LVLNKiDLVp~e~ 193 (596)
+.|.+++...+..+|++|+|+||.............++.. .+.|.| +|+||+||++.+.
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~ 145 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHH
Confidence 4688999999999999999999998544333333333332 257755 5799999996543
No 351
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.92 E-value=0.0014 Score=64.97 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=46.6
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
+.|.|||.+||||||||+.+....... ..++.|..-....+.++ -.+.|+||+|-.... .-....+++++.+.
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~---~l~~~y~~~ad~iI 77 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN---SITSAYYRSAKGII 77 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH---HHHHHHhcCCCEEE
Confidence 368999999999999999999765321 11222322222234443 357899999975321 11234566776665
Q ss_pred ccCC
Q 007611 339 KLDD 342 (596)
Q Consensus 339 ~l~D 342 (596)
.+-|
T Consensus 78 lVfD 81 (202)
T cd04120 78 LVYD 81 (202)
T ss_pred EEEE
Confidence 5544
No 352
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.92 E-value=0.0048 Score=57.29 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHHhC-----CCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKAG-----PDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~~~-----~~K~lILVLNKiDLVp 190 (596)
|.......+..+|++|+|+|+.+|-+.. ...+..+..... .+.|+|+|.||+|+.+
T Consensus 62 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 4444556678999999999999884321 112222222111 3578999999999984
No 353
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.90 E-value=0.0032 Score=60.09 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp 190 (596)
|.......+..+|++|+|+|+.++.+... ..+.+++... ..+.|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 72 LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 43444566789999999999988743211 1233333221 13589999999999964
No 354
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=96.89 E-value=0.0026 Score=62.65 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh----CCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA----GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~----~~~K~lILVLNKiDLVp~ 191 (596)
++......+..+|+||+|+|+.+|.+... ..+.+.+... ..+.|+|+|.||+||...
T Consensus 70 ~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 70 WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred HHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 33444556789999999999988754321 1222223222 246899999999999654
No 355
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.88 E-value=0.003 Score=60.79 Aligned_cols=107 Identities=19% Similarity=0.155 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCC--CcHHHHHHHHHh-CCCCceeEEeeccCCCC---HHHHHHHHHHHHhcCC-e
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGT--RCIDMEKMVMKA-GPDKHLVLLLNKIDLVP---RESVEKWLKYLREELP-A 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~s--r~~~le~~i~~~-~~~K~lILVLNKiDLVp---~e~l~~Wl~yLr~~~p-t 207 (596)
+.......+..+|.+|+|+|+.++-+. ....+...+... ..+.|+|+|+||+||.. .+.+..++...+...- .
T Consensus 76 ~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (190)
T cd00879 76 ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKG 155 (190)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccc
Confidence 333445667899999999999887321 122334433221 13689999999999964 3344444321110000 0
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
+.+..+ .. ..-.....|+..+.|++++++.|.++
T Consensus 156 ~~~~~~-------~~-----~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 156 VSLKVS-------GI-----RPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccc-------Cc-----eeEEEEEeEecCCCChHHHHHHHHhh
Confidence 000000 00 00012245667788999999988764
No 356
>PLN00023 GTP-binding protein; Provisional
Probab=96.88 E-value=0.0029 Score=67.13 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=49.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeC----------------CcEEEEecCCCccCCCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD----------------KNVKLLDCPGVVMLKSG 323 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~----------------~~i~LiDTPGI~~~~~~ 323 (596)
..++|+|||..+|||||||+.|++.... ...++-|++.....+.++ -.+.|.||+|-.....
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs- 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD- 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh-
Confidence 4588999999999999999999976532 223344544433333332 1378999999753321
Q ss_pred ChHHHHHhhccccccccCC
Q 007611 324 ENDASIALRNCKRIEKLDD 342 (596)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~D 342 (596)
-....+++++.+..+-|
T Consensus 99 --L~~~yyr~AdgiILVyD 115 (334)
T PLN00023 99 --CRSLFYSQINGVIFVHD 115 (334)
T ss_pred --hhHHhccCCCEEEEEEe
Confidence 12234566665554444
No 357
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.87 E-value=0.00086 Score=73.45 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
..++|+++|++|+|||||+++|++.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe
Confidence 4588999999999999999999864
No 358
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=96.86 E-value=0.0019 Score=60.97 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=36.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
..+..+|++|+|.|+.++.+.... .....+....++.|+|||.||+||.+.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED 117 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC
Confidence 356789999999999887543321 123334444468999999999999763
No 359
>PRK11058 GTPase HflX; Provisional
Probab=96.86 E-value=0.0053 Score=67.76 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=56.0
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHH-HHHHHHHhC-CCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCID-MEKMVMKAG-PDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ 217 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~-le~~i~~~~-~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~ 217 (596)
...+..||+||.|+|+.+|....... +.+++.... .++|+|+|+||+||++.... ........+|.+ +
T Consensus 271 l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~~~~~~~~~-v------- 340 (426)
T PRK11058 271 LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDRDEENKPIR-V------- 340 (426)
T ss_pred HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHHHhcCCCce-E-------
Confidence 45567899999999999986543321 233343322 36899999999999864221 111111122321 1
Q ss_pred hhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+|+..+.|.+.|++.|..+..
T Consensus 341 ----------------~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 341 ----------------WLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ----------------EEeCCCCCCHHHHHHHHHHHhh
Confidence 2345667899999999987653
No 360
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.84 E-value=0.0028 Score=66.64 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
....|+|+|.||+|||||++.|..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999999874
No 361
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.84 E-value=0.0052 Score=70.66 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHHHhcCCeEEE
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYLREELPAVAF 210 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e---~l~~Wl~yLr~~~ptv~f 210 (596)
.|..++...+..+|.+|+|+|+.++...........+. ..+.|+|+|+||+||.... ....|...+. ++..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~--~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg--~~~~-- 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--ENDLEIIPVLNKIDLPAADPERVKQEIEDVIG--IDAS-- 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--HCCCCEEEEEECCCCCcccHHHHHHHHHHHhC--CCcc--
Confidence 46777888999999999999999876533222222222 2478999999999996432 1223322221 1100
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccc--cccceEEEeec---CCCCCcchHHHhhh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE--IKKSITVGVIG---LPNVGKSSLINSLK 283 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~--~k~~i~V~vVG---~PNVGKSSLINsL~ 283 (596)
.....|+..+.|++.|++.|.++.+... ...++...|+- -|.+|+-+++....
T Consensus 160 --------------------~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~s 217 (600)
T PRK05433 160 --------------------DAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVD 217 (600)
T ss_pred --------------------eEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEc
Confidence 0113455677899999999987765421 12223322221 25666655544443
No 362
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.82 E-value=0.004 Score=55.22 Aligned_cols=58 Identities=24% Similarity=0.207 Sum_probs=39.9
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHH---HHHHHhCCCCceeEEeeccCCCCHHHHHHH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDME---KMVMKAGPDKHLVLLLNKIDLVPRESVEKW 197 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le---~~i~~~~~~K~lILVLNKiDLVp~e~l~~W 197 (596)
...+..+|++++|+|+..|......... ........++|+|+|+||+|+.+......+
T Consensus 63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~ 123 (157)
T cd00882 63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEE 123 (157)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHH
Confidence 5677889999999999988643322211 111223358999999999999987654443
No 363
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.82 E-value=0.002 Score=63.91 Aligned_cols=57 Identities=30% Similarity=0.332 Sum_probs=37.3
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC------C--cEEEEecCCCcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD------K--NVKLLDCPGVVM 319 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~------~--~i~LiDTPGI~~ 319 (596)
++|.+||-++||||||++.+++..... ..++.|++-....+.++ . .+.|+||+|-..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~ 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh
Confidence 479999999999999999999865321 22233333322233331 1 478999999753
No 364
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.81 E-value=0.002 Score=61.89 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=37.5
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
..+..+|++|+|.|..++.+.... .....+....++.|+|||.||+||.+..
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh
Confidence 366789999999999988654332 1333344444578999999999997653
No 365
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.80 E-value=0.0054 Score=61.27 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCC-----CC--CcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPL-----GT--RCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl-----~s--r~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
+.|+.++...+..+|++|+|+||.++. +. .......++. ....+|+|+|+||+|+++
T Consensus 88 ~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 88 RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCCCeEEEEEEcccccc
Confidence 457778888888999999999999862 21 1112222222 223478999999999984
No 366
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.79 E-value=0.0071 Score=70.03 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
..|.+.+...+..+|++|+|+||..++.........++... +.+++|+|+||+|+++
T Consensus 115 ~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 115 EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVD 171 (632)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEeccccc
Confidence 45677777889999999999999988765554444444433 3467899999999985
No 367
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.77 E-value=0.0027 Score=59.46 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=38.7
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHH
Q 007611 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKW 197 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~W 197 (596)
.+..+|++++|.|+.++.+.... .+...+....++.|+|+|+||+||.+......|
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 125 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKK 125 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhh
Confidence 45789999999999887543221 122333334457999999999999877655444
No 368
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.76 E-value=0.012 Score=58.03 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhhh---cCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc----
Q 007611 132 DRAFYKELVKVIEV---SDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE---- 204 (596)
Q Consensus 132 ~~~~~kel~kvie~---sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~---- 204 (596)
+..+-+.+...|+. -..++.|+|+|.|+.-...++.+++... +.|.++|+||+|-++.....+-+...++.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 44455566666654 4568889999999988888888888764 79999999999999976655445555533
Q ss_pred CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 205 ~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
++.-.. ..+.|+....|.++|...|..+..
T Consensus 168 ~~~~~~---------------------~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 168 PPDDQW---------------------VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCccce---------------------EEEEecccccCHHHHHHHHHHHhh
Confidence 221000 112344567889999988887654
No 369
>PLN03126 Elongation factor Tu; Provisional
Probab=96.76 E-value=0.008 Score=67.27 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCCHH
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRE 192 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp~e 192 (596)
.+.|.+++...+..+|++|.|+||.+...........++... ++| +|+++||+||++.+
T Consensus 154 h~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~ 213 (478)
T PLN03126 154 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNMVVFLNKQDQVDDE 213 (478)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEecccccCHH
Confidence 345888999999999999999999987654443444444332 566 78899999999854
No 370
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.74 E-value=0.0044 Score=62.35 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=46.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCce-eEEeeccCCCC-HHHHHHHHHHHHh
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHL-VLLLNKIDLVP-RESVEKWLKYLRE 203 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~l-ILVLNKiDLVp-~e~l~~Wl~yLr~ 203 (596)
..+...+..+|+||+|+|+..++......+..++... ++|. |+|+||+|+++ .+....+...|++
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~ 161 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKH 161 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHH
Confidence 5666778999999999999988776666666666543 5675 45999999984 3345555544543
No 371
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.74 E-value=0.0088 Score=68.74 Aligned_cols=97 Identities=15% Similarity=0.260 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHHHhcCCeEEE
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYLREELPAVAF 210 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e---~l~~Wl~yLr~~~ptv~f 210 (596)
.|..+....+..+|++|+|+|+.++.............. .+.|+|+|+||+||.... ....|..++. ++...
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~~~~~~~el~~~lg--~~~~~- 156 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSADPERVKKEIEEVIG--LDASE- 156 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccCHHHHHHHHHHHhC--CCcce-
Confidence 477788889999999999999998765433222222222 368999999999996431 2234433332 11000
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
....|+..+.|++.|++.|.++.+.
T Consensus 157 ---------------------vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 157 ---------------------AILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ---------------------EEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1134556778999999999877654
No 372
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.73 E-value=0.009 Score=65.79 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHH-HHH-HHHHhCCCCceeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCID-MEK-MVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~-le~-~i~~~~~~K~lILVLNKiDLVp 190 (596)
+.|++.+...+..+|++|+|+|+.++....... .+. .+....+.+++|+|+||+||++
T Consensus 96 ~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 96 RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 457787777888999999999999984322222 111 1222223467899999999984
No 373
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.72 E-value=0.005 Score=57.20 Aligned_cols=56 Identities=21% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHH---HHHhCCCCceeEEeeccCCCCH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~---i~~~~~~K~lILVLNKiDLVp~ 191 (596)
.|.......+..+|++|.|.|+-+|.+.. .+..+ +....++.|+|+|+||+||...
T Consensus 63 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 63 EFDAITKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence 34444556788999999999998875432 22222 3333357899999999999764
No 374
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.72 E-value=0.0045 Score=59.38 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
...+..+|++|+|.|+.+|-+.... .....+....++.|+|||.||+||.+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 3457789999999999988654332 12233333345789999999999975
No 375
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.71 E-value=0.0038 Score=61.14 Aligned_cols=52 Identities=23% Similarity=0.194 Sum_probs=34.8
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcH-----HHHHHHHH-hCCCCceeEEeeccCCC
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCI-----DMEKMVMK-AGPDKHLVLLLNKIDLV 189 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~-----~le~~i~~-~~~~K~lILVLNKiDLV 189 (596)
.....+..+|++|+|+|+.+|.+.... .+...+.. ...+.|+|||.||+||.
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 345667899999999999888653321 11111111 12467999999999997
No 376
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=96.71 E-value=0.0049 Score=67.80 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCC--CCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDP--LGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdP--l~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
+.|++.+...+..+|++|+|+|+.++ +.........++... ..+++|+|+||+||++
T Consensus 95 ~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 95 RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVN 153 (425)
T ss_pred ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEcccccc
Confidence 44777777778899999999999984 333333333343332 2356899999999985
No 377
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.71 E-value=0.0048 Score=57.31 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-H-HHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-I-DMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~-~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|.+|+|+|+.++-+... . .+..+.... ..+.|+|+|+||+||.+.
T Consensus 63 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 63 FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 33444567788999999999988754221 1 122222211 236799999999999764
No 378
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.71 E-value=0.0041 Score=64.49 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE 204 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~ 204 (596)
.|..+....+..+|++|+|+||..........+.+.+.. .++|+|+++||+|+.... ...++..++..
T Consensus 76 df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~a~-~~~~~~~l~~~ 143 (270)
T cd01886 76 DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTGAD-FFRVVEQIREK 143 (270)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCCCC-HHHHHHHHHHH
Confidence 377788999999999999999988775554455555543 368999999999997532 22334444443
No 379
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.70 E-value=0.003 Score=63.59 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=43.8
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|||.+||||||||+.+++..... ..++.+..-. ..+.++ -.+.|+||+|-..-. .-....+++++.+.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~---~l~~~~~~~~d~il 77 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYD---NVRPLAYPDSDAVL 77 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHH---HHhHHhccCCCEEE
Confidence 579999999999999999999765311 1111121111 123333 257789999974321 11123455666655
Q ss_pred ccCC
Q 007611 339 KLDD 342 (596)
Q Consensus 339 ~l~D 342 (596)
.+-|
T Consensus 78 lvfd 81 (222)
T cd04173 78 ICFD 81 (222)
T ss_pred EEEE
Confidence 4433
No 380
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.70 E-value=0.0048 Score=59.60 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=35.6
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
...+..+|++|+|+|+.++-+... ..+.+.+....++.|+|+|.||+||.+.
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc
Confidence 345668999999999988744321 1222333433457899999999999753
No 381
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.69 E-value=0.0034 Score=61.12 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=36.3
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeCC---cEEEEecCCCcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~ 319 (596)
.++|++||-+|||||||++.+...... ...++-|..- ...+.++. .+.|+||||-..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchh
Confidence 478999999999999999999875431 1112222111 11122332 478899999753
No 382
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.68 E-value=0.0052 Score=60.14 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhCCCCceeEEeeccCCCCHHHH--HHHHHHHHhcCCeEEEE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRESV--EKWLKYLREELPAVAFK 211 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~~~K~lILVLNKiDLVp~e~l--~~Wl~yLr~~~ptv~f~ 211 (596)
|.......+..+|+||+|+|+.++.+... ......+....+..|+|+|.||+||.+...+ .....+.. .+..-.|
T Consensus 68 ~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-~~~~~~~- 145 (199)
T cd04110 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAG-QMGISLF- 145 (199)
T ss_pred HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHH-HcCCEEE-
Confidence 33444567788999999999988854321 1122223333456899999999999865321 22222332 2222222
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..|+..+.|++.|++.|...
T Consensus 146 ----------------------e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 146 ----------------------ETSAKENINVEEMFNCITEL 165 (199)
T ss_pred ----------------------EEECCCCcCHHHHHHHHHHH
Confidence 23445677888888777553
No 383
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.67 E-value=0.0033 Score=60.83 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=36.9
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVML 320 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~ 320 (596)
++|+|+|.++|||||||+.++...... ..++-|.+-. ..+.++ -++.|+||+|-...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~ 62 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDY 62 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccc
Confidence 579999999999999999999765421 1222222211 122332 35789999997543
No 384
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.65 E-value=0.018 Score=62.87 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCce-eEEeeccCCCCHH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHL-VLLLNKIDLVPRE 192 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~l-ILVLNKiDLVp~e 192 (596)
+.|..+....+..+|++|.|+||+.+..........++... +.|. |+|+||+||++.+
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~ 144 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDE 144 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEecccCCHH
Confidence 45778888888899999999999986544333444444433 5565 4689999999754
No 385
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.65 E-value=0.0062 Score=58.43 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=35.9
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcHH--HHHHHHHhCCCCceeEEeeccCCCC
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCID--MEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~~--le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
....+..+|+||+|.|+-++.+..... ....+....++.|+|||.||+||.+
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 334678899999999998876543221 1122333335789999999999976
No 386
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.65 E-value=0.012 Score=69.04 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH--HHHHHHHHHH---HhcC-C
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR--ESVEKWLKYL---REEL-P 206 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~--e~l~~Wl~yL---r~~~-p 206 (596)
..|.......+..+|++|+|+||.+............+.. .+.|+|+|+||+|+.+. +.+..++..+ ...+ .
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~ 383 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGG 383 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCC
Confidence 4566667778899999999999988654333333333332 37899999999999753 2233333211 1111 0
Q ss_pred eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 207 tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.++ ....|+..+.|.+.|+..|..++
T Consensus 384 ~vp----------------------vv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 384 DTP----------------------MIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred Cce----------------------EEEEECCCCCCHHHHHHhhhhhh
Confidence 011 12455667788999998886654
No 387
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.64 E-value=0.0038 Score=60.69 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=36.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~ 318 (596)
..++|++||-++||||||++.+....... ..++.|..- ...+.++. .+.|+||+|-.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCch
Confidence 35789999999999999999999765321 111222111 11233332 47899999964
No 388
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.64 E-value=0.01 Score=56.41 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh--CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhc
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREE 204 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~--~~~K~lILVLNKiDLVp~-----e~l~~Wl~yLr~~ 204 (596)
..|.......+..+|++|+|.|+.++.+.... .....+... .++.|+++|.||+||.+. +....|...+.
T Consensus 74 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~-- 151 (180)
T cd04127 74 ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG-- 151 (180)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC--
Confidence 34555556678899999999999887543221 111122221 236789999999999753 23444443332
Q ss_pred CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 205 ~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
.|.+ ..|+..+.|++.+++.|..
T Consensus 152 ~~~~-------------------------e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 152 IPYF-------------------------ETSAATGTNVEKAVERLLD 174 (180)
T ss_pred CeEE-------------------------EEeCCCCCCHHHHHHHHHH
Confidence 2322 2334566788888877754
No 389
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.64 E-value=0.0072 Score=56.50 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHH---HHhC-CCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MKAG-PDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i---~~~~-~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|++|+|.|+.++.+. ..+.+++ .... .+.|+|+|.||+||...
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 65 YRAITSAYYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred HHHHHHHHHCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 333445567889999999999987643 2233332 2222 25899999999999753
No 390
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.63 E-value=0.011 Score=66.29 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
+.|.++....+..+|++|+|+||..+..........++... +.+++|+|+||+|++.
T Consensus 118 ~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 118 EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVD 174 (474)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeecccc
Confidence 45777888888999999999999987654333333333332 2467899999999984
No 391
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.62 E-value=0.0062 Score=56.16 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=35.9
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHH
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e 192 (596)
......+..+|.++.|+|..++-+... ..+..+.... ..+.|+|+|+||+|+..+.
T Consensus 64 ~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 122 (162)
T cd04138 64 AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART 122 (162)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce
Confidence 334457778999999999877643211 1122222211 2468999999999998643
No 392
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.62 E-value=0.0075 Score=55.59 Aligned_cols=57 Identities=23% Similarity=0.134 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
+.......+..+|++|+|+|+.++-+... ..+...+... ..+.|+|+|+||+|+...
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 62 YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 33334455678999999999987753211 1122222322 236899999999999854
No 393
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.61 E-value=0.012 Score=54.76 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCC-CcHHHHHHHHHhC-CCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGT-RCIDMEKMVMKAG-PDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~s-r~~~le~~i~~~~-~~K~lILVLNKiDLVp 190 (596)
|.......+..+|++|+|+|+.+|-+. ....+...+.... ++.|+|+|+||+|+.+
T Consensus 63 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 63 YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 433444567789999999999887432 1222223333332 4678999999999984
No 394
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.61 E-value=0.0023 Score=60.89 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=34.4
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh--CCCCceeEEeeccCCCCHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA--GPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~le~~i~~~--~~~K~lILVLNKiDLVp~e 192 (596)
..+..+|++|+|+|+.+|.+.. .+..++... ..+.|+|+|+||+||.+..
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~ 124 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFS--YCAEVYKKYFMLGEIPCLFVAAKADLDEQQ 124 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHH--HHHHHHHHhccCCCCeEEEEEEcccccccc
Confidence 3468899999999998874321 222333321 2368999999999997543
No 395
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.60 E-value=0.0087 Score=56.38 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHH---HHh-CCCCceeEEeeccCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MKA-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i---~~~-~~~K~lILVLNKiDLVp 190 (596)
.|.......+..+|+||+|.|+.++.+.. .+++++ ... ..+.|+|+|.||+||..
T Consensus 64 ~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 64 RFRTITTAYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHHHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 34445567788999999999998875421 233332 222 24679999999999974
No 396
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.60 E-value=0.0074 Score=60.84 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV 189 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLV 189 (596)
.|..+....+..+|.+|.|+|+..+.......+.+.+.. .+.|+|+|+||+|+.
T Consensus 85 ~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 85 DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred ccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 377889999999999999999998765444444444332 368999999999986
No 397
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.57 E-value=0.012 Score=67.60 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH---HHHHHHHHHHH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR---ESVEKWLKYLR 202 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~---e~l~~Wl~yLr 202 (596)
..|..++..++..+|.+|+|+||..........+...+.. .+.|+|+|+||+|+... +.+.....+|.
T Consensus 75 ~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~ 145 (594)
T TIGR01394 75 ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFA 145 (594)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 3477889999999999999999987543333333344433 36899999999999642 34455555553
No 398
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.56 E-value=0.0068 Score=57.00 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHH----hCCCCceeEEeeccCCCCH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMK----AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~----~~~~K~lILVLNKiDLVp~ 191 (596)
.|.......+..+|.+|+|.|+.+|.+.. .+..++.. ..++.|+|+|.||+||...
T Consensus 63 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 63 RFRAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 34445566788999999999999885432 23333322 2346789999999999643
No 399
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=96.54 E-value=0.0051 Score=57.40 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=35.5
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh--CCCCceeEEeeccCCCCH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~--~~~K~lILVLNKiDLVp~ 191 (596)
....+..+|++|+|.|.-++-+... ......+... ..++|+++|.||+||.+.
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 3345678999999999988754321 1222223322 247899999999999764
No 400
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.52 E-value=0.0063 Score=57.05 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHH---HHh-CCCCceeEEeeccCCCCH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i---~~~-~~~K~lILVLNKiDLVp~ 191 (596)
.|.......+..+|+||+|+|+.++-+.. .+..++ ... .++.|+|+|.||+||...
T Consensus 63 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~--~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 63 RFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 34455566778999999999998875322 222222 222 246899999999999654
No 401
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.52 E-value=0.0076 Score=58.25 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHH-hCCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~-~~~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|+||+|+|+.++.+... ..+.+++.. ..++.|++||.||+||...
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 33334456789999999999998753211 122222221 1136899999999998654
No 402
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.52 E-value=0.017 Score=63.41 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
...|.+++...+..+|++|.|+||..++.........++... +.+++|+|+||+|+++
T Consensus 90 h~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 90 HEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVD 147 (406)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEeccccc
Confidence 345788888899999999999999988766555444444433 3457899999999985
No 403
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.51 E-value=0.0079 Score=56.56 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=34.4
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh----CCCCceeEEeeccCCCC
Q 007611 141 KVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA----GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~----~~~K~lILVLNKiDLVp 190 (596)
..+..+|++|+|+|..++.+... ..+...+... .++.|+|||.||+||.+
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 45678999999999988764321 2222333322 14689999999999976
No 404
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.0034 Score=64.43 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=52.9
Q ss_pred cccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcccccc---ccCCCCc-----eeeeEEEEeCCcEE
Q 007611 239 DCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVAN---VGATPGL-----TRSMQEVQLDKNVK 310 (596)
Q Consensus 239 ~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~---vs~~Pgt-----Tr~~q~v~l~~~i~ 310 (596)
.-.|-+.|=..|-+-+-..+ -+++|.-||-++.||||||++|.+.+.-. ....|++ |-..|+..+--.+.
T Consensus 21 GHvGFdsLPdQLV~ksv~~G--F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLt 98 (406)
T KOG3859|consen 21 GHVGFDSLPDQLVNKSVSQG--FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLT 98 (406)
T ss_pred CccCcccChHHHHHHHHhcC--ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEE
Confidence 34455555555555443333 46899999999999999999999876421 2223443 33344434444789
Q ss_pred EEecCCCccC
Q 007611 311 LLDCPGVVML 320 (596)
Q Consensus 311 LiDTPGI~~~ 320 (596)
++||-|+...
T Consensus 99 iv~tvGfGDQ 108 (406)
T KOG3859|consen 99 IVDTVGFGDQ 108 (406)
T ss_pred EEeecccccc
Confidence 9999999865
No 405
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.49 E-value=0.011 Score=54.75 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCC--CcHHHHHHHHHh-CCCCceeEEeeccCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGT--RCIDMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~s--r~~~le~~i~~~-~~~K~lILVLNKiDLVp 190 (596)
.|.......+..+|.+++|+|+.+|-+. ....+..+.... ..++|+|+|+||+|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 60 DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 3445556688899999999999887532 122333443321 24799999999999986
No 406
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.47 E-value=0.001 Score=73.92 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=23.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..+.||++|+-..|||||+.+|++..
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCC
Confidence 46899999999999999999999753
No 407
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.46 E-value=0.012 Score=55.24 Aligned_cols=57 Identities=21% Similarity=0.145 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHh----CCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKA----GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~----~~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|++|+|.|..++-+.... .+..++... ..+.|+|+|.||+||.++
T Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (170)
T cd04116 67 FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER 129 (170)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc
Confidence 444445577889999999998877533221 122222211 135799999999999754
No 408
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.46 E-value=0.012 Score=54.17 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC--CCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG--PDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~--~~K~lILVLNKiDLVp 190 (596)
+.......+..+|+||.|+|.-+|.+... ..+...+.... .+.|+++|+||+|+.+
T Consensus 60 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 60 FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 44455677889999999999877653211 12223333322 3789999999999987
No 409
>PRK10218 GTP-binding protein; Provisional
Probab=96.44 E-value=0.019 Score=66.06 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC---HHHHHHHHHHHH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP---RESVEKWLKYLR 202 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp---~e~l~~Wl~yLr 202 (596)
.|..+....+..+|.+|+|+||.+........+...+.. .+.|.|+|+||+|+.. .+.+.....+|.
T Consensus 80 df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~ 149 (607)
T PRK10218 80 DFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFV 149 (607)
T ss_pred hhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHh
Confidence 366778889999999999999987654444444444433 3789999999999863 345666666653
No 410
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.41 E-value=0.006 Score=61.91 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=42.9
Q ss_pred ceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.++|+|||-++|||||||+.+....... ..++-|..- ...+.++ -.+.|+||+|-..-. .-....+++++.+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~---~~~~~~~~~ad~v 88 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYD---NVRPLCYSDSDAV 88 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhH---HHHHHHcCCCcEE
Confidence 4789999999999999999998764211 111111111 1112222 257899999964221 1122345666655
Q ss_pred ccc
Q 007611 338 EKL 340 (596)
Q Consensus 338 ~~l 340 (596)
..+
T Consensus 89 IlV 91 (232)
T cd04174 89 LLC 91 (232)
T ss_pred EEE
Confidence 433
No 411
>PLN03110 Rab GTPase; Provisional
Probab=96.41 E-value=0.0071 Score=60.21 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHH---HHHh-CCCCceeEEeeccCCCCH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~---i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
..|.......+..+|+||+|.|..++-+.. .+..+ +... ..+.|+|+|.||+||...
T Consensus 72 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 72 ERYRAITSAYYRGAVGALLVYDITKRQTFD--NVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 345555567788999999999999885432 22222 2222 236899999999999643
No 412
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=96.41 E-value=0.0088 Score=56.74 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-H-HHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-I-DMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYL 201 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~-~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yL 201 (596)
|.......+..+|+||+|+|+.++.+... . .+..++... ..++|++||+||+||...........++
T Consensus 56 ~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~ 125 (167)
T cd04161 56 FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL 125 (167)
T ss_pred HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc
Confidence 33344567889999999999998853211 1 122222211 1378999999999997654344444444
No 413
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.40 E-value=0.006 Score=57.65 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=33.9
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~ 318 (596)
++|+|||.+|||||||++.++....... .+..+. ....+.++ ..+.+.||+|--
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~--~~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGR--FKKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccc--eEEEEEECCEEEEEEEEECCCCC
Confidence 3699999999999999998875543221 111111 11223333 247789999984
No 414
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.39 E-value=0.012 Score=55.31 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHH---HHHHhC-CCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEK---MVMKAG-PDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~---~i~~~~-~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|++|+|+|+.++-+.. .+.. .+.... ...|+++|.||+||.+.
T Consensus 63 ~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 63 YRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred HHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 4444566788999999999998774321 2222 232222 36789999999999764
No 415
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.39 E-value=0.0029 Score=61.84 Aligned_cols=101 Identities=29% Similarity=0.299 Sum_probs=55.8
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE---EE----eCCcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE---VQ----LDKNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~---v~----l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
-.|.|+|.+|+||++|+..|..... +.|...+.. +. .+..+.|||+||-..-+..--.....+.++.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~------~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKT------VPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---------B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCc------CCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 5799999999999999999997643 122222111 11 2457999999998765431111112466777
Q ss_pred cccccCCCchh------H----HHHHhh-----CCcchhhhhhCCCCCC
Q 007611 336 RIEKLDDPVGP------V----KEILNR-----CPANLLISLYKLPSFD 369 (596)
Q Consensus 336 ~i~~l~D~~~~------v----~~iL~~-----~~~~~L~~l~ki~~~~ 369 (596)
.|.++.|.... + .++|.. ...+.|+..||-|.+.
T Consensus 78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 77777776421 1 122211 2235566677877664
No 416
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.39 E-value=0.011 Score=58.75 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV 189 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLV 189 (596)
|.......+..+|++|.|+|+..........+.+.+.. .++|+++|+||+|++
T Consensus 84 f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 84 FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccC
Confidence 56677888899999999999987765433233233322 358999999999987
No 417
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.38 E-value=0.013 Score=54.46 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHH-hCCCCceeEEeeccCCCCH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMK-AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~-~~~~K~lILVLNKiDLVp~ 191 (596)
.|.......+..+|++|+|+|+.++.+... ..+...+.. ..++.|+++|+||+|+.+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 61 RFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 344455667789999999999988754322 112122222 2357899999999999754
No 418
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.37 E-value=0.0082 Score=56.83 Aligned_cols=55 Identities=27% Similarity=0.328 Sum_probs=37.5
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCCHHHH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRESV 194 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp~e~l 194 (596)
....+..+|++|+|+|+.++.+... ..+.+++. ..++.|+|+|.||+||.....+
T Consensus 61 ~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~-~~~~~piilv~NK~Dl~~~~~~ 117 (164)
T cd04162 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQ-HPPDLPLVVLANKQDLPAARSV 117 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHh-CCCCCcEEEEEeCcCCcCCCCH
Confidence 3457889999999999988863221 11233332 2368999999999999654333
No 419
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.34 E-value=0.023 Score=58.02 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhh-hcCeEEEEEeCCCCCCCCc-HHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc
Q 007611 132 DRAFYKELVKVIE-VSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE 204 (596)
Q Consensus 132 ~~~~~kel~kvie-~sDVIleVlDARdPl~sr~-~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~ 204 (596)
...+..++..+++ ..++||.|+||+.-+.... ..+.+.+.. .++|.|+|+||+|++.+..- |+..+...
T Consensus 148 ~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~D~~~~~~~--~~~~~~~~ 218 (240)
T smart00053 148 EEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKLDLMDEGTD--ARDILENK 218 (240)
T ss_pred HHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECCCCCCccHH--HHHHHhCC
Confidence 3455666888888 4569999999987665543 355555543 37899999999999976432 99888765
No 420
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.33 E-value=0.015 Score=56.81 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=34.8
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh--CCCCceeEEeeccCCCCH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~--~~~K~lILVLNKiDLVp~ 191 (596)
...+..+|+||+|+|+.+|.+... ..+...+... ..+.|+|+|+||+|+.+.
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 346789999999999988754221 1111222221 136899999999999873
No 421
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.32 E-value=0.012 Score=54.64 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=34.5
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh--CCCCceeEEeeccCCCCH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~--~~~K~lILVLNKiDLVp~ 191 (596)
...+..+|++|+|+|.-++.+.... ...+.+... ..+.|+|+|+||+||.+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3456789999999999887543211 112223221 246899999999999764
No 422
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.023 Score=60.66 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...-|.++|.-..||||+||-|+...
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~d 82 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQD 82 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCC
Confidence 45679999999999999999999765
No 423
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=96.31 E-value=0.016 Score=55.33 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCC-CCceeEEeeccCCCCHH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGP-DKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~-~K~lILVLNKiDLVp~e 192 (596)
.|..-....+..+|++|+|.|+.++.+... ..+..+.....+ ..|+|+|.||+||.+..
T Consensus 61 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 61 RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 344444556789999999999987633221 112222222222 24589999999997653
No 424
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.30 E-value=0.02 Score=55.44 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh----CCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA----GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~----~~~K~lILVLNKiDLVp 190 (596)
|.......+..+|++|+|+|.-++.+... ..+...+... ..+.|+|||.||+||..
T Consensus 60 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 60 YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 33344456788999999999987754321 1222223222 24689999999999964
No 425
>PRK12739 elongation factor G; Reviewed
Probab=96.30 E-value=0.009 Score=69.89 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ 205 (596)
|..+....+..+|++|+|+||.+........+...+.. .++|+|+++||+|+++.+ ....+..++..+
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l 153 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIGAD-FFRSVEQIKDRL 153 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 66789999999999999999998876555555555544 368999999999999753 344555555544
No 426
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.28 E-value=0.016 Score=66.54 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
.|.......+..+|++|+|+|+.+.+..........+.. .+.|+|+|+||+|+++
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIP 135 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccc
Confidence 344444556789999999999998654444444444443 3789999999999986
No 427
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.0084 Score=69.73 Aligned_cols=106 Identities=17% Similarity=0.286 Sum_probs=64.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc--cccccCC---------------CCceeeeEE--EEe-C-CcEEEEecCCCcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH--VANVGAT---------------PGLTRSMQE--VQL-D-KNVKLLDCPGVVM 319 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k--v~~vs~~---------------PgtTr~~q~--v~l-~-~~i~LiDTPGI~~ 319 (596)
.--+|||+|+-..|||||.-+|+-.. +...|.+ -|.|...-- ..+ + ..|.||||||-+.
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 34679999999999999999998321 1111111 144433222 222 3 7899999999997
Q ss_pred CCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 320 LKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
... .+..+|+.|+....+.|.+. .+...+.+..-+.++.+||+|...
T Consensus 89 Ft~---EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 89 FTI---EVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLG 142 (697)
T ss_pred cHH---HHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccc
Confidence 643 34445555554444433322 233344455557888889999754
No 428
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.27 E-value=0.012 Score=56.83 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=35.2
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHH-hCCCCceeEEeeccCCCC
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMK-AGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~-~~~~K~lILVLNKiDLVp 190 (596)
......+..+|++|+|+|+-++.+.. ...+.+.+.. ...+.|+|||.||+||..
T Consensus 76 ~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 76 PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 33445678999999999998764321 1123333321 113579999999999964
No 429
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.26 E-value=0.017 Score=58.13 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=35.3
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
...+..+|++|+|.|+.++.+..+. .+..+......+.|+|||.||+||..
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 3456789999999999988654322 12222222234678999999999976
No 430
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.24 E-value=0.014 Score=54.45 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh--CCCCceeEEeeccCCCCH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~--~~~K~lILVLNKiDLVp~ 191 (596)
....+..+|.+|+|+|+.+|-+... ......+... ..+.|+|+|.||+||.+.
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3445778999999999988754211 1111222221 236899999999999763
No 431
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.24 E-value=0.0041 Score=56.07 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=33.1
Q ss_pred CCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHH
Q 007611 176 DKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (596)
Q Consensus 176 ~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk 251 (596)
+.|+++|+||+|+........+..++........+ .+++..+.|.+.++++|.
T Consensus 108 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPII-----------------------PLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceE-----------------------EeecCCCCCHHHHHHHhh
Confidence 68999999999998765444444444332111111 334456778888887764
No 432
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.24 E-value=0.014 Score=57.83 Aligned_cols=56 Identities=23% Similarity=0.178 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh-CCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~-~~~K~lILVLNKiDLVp 190 (596)
|.......+..+|++|+|.|+.++.+.... .....+... ..+.|+|||.||+||..
T Consensus 62 ~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 62 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 333345677899999999999998654321 122233332 34689999999999964
No 433
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.24 E-value=0.0086 Score=63.93 Aligned_cols=23 Identities=39% Similarity=0.882 Sum_probs=21.2
Q ss_pred cceEEEeecCCCCCcchHHHhhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK 283 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~ 283 (596)
++..|||.|.||+|||||++.|.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999875
No 434
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.23 E-value=0.027 Score=57.64 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=52.3
Q ss_pred HhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHH----------hCCCCceeEEeeccCCCCH-H-HHHHHHHHHHhcCCeE
Q 007611 142 VIEVSDVILEVLDARDPLGTRC-IDMEKMVMK----------AGPDKHLVLLLNKIDLVPR-E-SVEKWLKYLREELPAV 208 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~-~~le~~i~~----------~~~~K~lILVLNKiDLVp~-e-~l~~Wl~yLr~~~ptv 208 (596)
.+..+|+||+|.|+-++.+... ..+.+.+.. ...+.|+|||.||+||... + .......++......-
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 4678999999999987753211 112222221 1246899999999999742 1 1222223333222221
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.| ..|+..+.|++.|+..|...+
T Consensus 148 ~~-----------------------evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YF-----------------------EVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EE-----------------------EEeCCCCCCHHHHHHHHHHHh
Confidence 22 234456778999998887654
No 435
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.20 E-value=0.017 Score=55.60 Aligned_cols=55 Identities=20% Similarity=0.125 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHH---HHHh-CCCCceeEEeeccCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~---i~~~-~~~K~lILVLNKiDLVp 190 (596)
.|.......+..+|+||+|+|+.++.+.. .+..+ +... ....|+|+|.||+||.+
T Consensus 61 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~--~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 61 RFRSLNNSYYRGAHGYLLVYDVTDQESFE--NLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred HHHhhHHHHccCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 34445567788999999999998875322 22222 2222 23578999999999984
No 436
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.19 E-value=0.0087 Score=56.45 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=35.7
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
.+..+|++|.|.|..++-+.... .+...+....++.|+|+|.||+||.+..
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~ 120 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDP 120 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcCh
Confidence 45689999999999888543221 1223333334689999999999997643
No 437
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.18 E-value=0.03 Score=59.38 Aligned_cols=95 Identities=26% Similarity=0.361 Sum_probs=60.2
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcH-----HHHHHHHHh---CCCCceeEEeeccC-CCCHHHHHHHHHHHHhcCCeE
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCI-----DMEKMVMKA---GPDKHLVLLLNKID-LVPRESVEKWLKYLREELPAV 208 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~-----~le~~i~~~---~~~K~lILVLNKiD-LVp~e~l~~Wl~yLr~~~ptv 208 (596)
+|.+=||.+-|++.|+|+- |.--++| .|...+... -.+||.|+|+|||| +.+.+.++...+++.+.+...
T Consensus 230 ~FLrHIERt~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 230 RFLRHIERTRVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE 308 (369)
T ss_pred HHHHHHHhhheeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC
Confidence 4455677889999999984 2221222 122222222 13799999999999 678888999999998765432
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+- ++|+....|.+.|+..+..+..
T Consensus 309 ~~~----------------------~ISa~t~~g~~~L~~~~~~~l~ 333 (369)
T COG0536 309 VFY----------------------LISALTREGLDELLRALAELLE 333 (369)
T ss_pred cce----------------------eeehhcccCHHHHHHHHHHHHH
Confidence 221 1344556677777777665543
No 438
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.16 E-value=0.019 Score=53.30 Aligned_cols=56 Identities=20% Similarity=0.109 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHH---HHHh--CCCCceeEEeeccCCCCH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA--GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~---i~~~--~~~K~lILVLNKiDLVp~ 191 (596)
.|.......+..+|++|+|+|+-+|.+.. .+..+ +... ..+.|+++|.||+||...
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 61 RFRTLTSSYYRGAQGVILVYDVTRRDTFT--NLETWLNELETYSTNNDIVKMLVGNKIDKENR 121 (161)
T ss_pred hhhhhhHHHhCCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhCCCCCCcEEEEEECCccccc
Confidence 34445566778999999999998775421 22222 2222 246889999999999843
No 439
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.16 E-value=0.011 Score=59.20 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=52.4
Q ss_pred hcCeEEEEEeCCCCCCCCc-HHHHHHHHHh--CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEcchhHHhhh
Q 007611 145 VSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQEQRAN 220 (596)
Q Consensus 145 ~sDVIleVlDARdPl~sr~-~~le~~i~~~--~~~K~lILVLNKiDLVp~e~l-~~Wl~yLr~~~ptv~f~~~~~~~~~~ 220 (596)
.+|++|+|+|+-++-+... ..+...+... ..+.|+|+|.||+||++...+ ......+...+..-.|
T Consensus 72 ~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~---------- 141 (221)
T cd04148 72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFI---------- 141 (221)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEE----------
Confidence 8999999999998854321 2222333332 136899999999999765321 1112223333332112
Q ss_pred cCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 221 ~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
..|+..+.|++.|++.|-+...
T Consensus 142 -------------e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 142 -------------ETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred -------------EecCCCCCCHHHHHHHHHHHHH
Confidence 2344567788888888776543
No 440
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.14 E-value=0.016 Score=54.69 Aligned_cols=53 Identities=26% Similarity=0.246 Sum_probs=35.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRES 193 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e~ 193 (596)
..+..+|+++.|.|+.++-+.... .+...+....++.|+|+|.||+||.+...
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 122 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh
Confidence 356789999999999877542221 12223333335789999999999986543
No 441
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.14 E-value=0.007 Score=59.88 Aligned_cols=72 Identities=13% Similarity=0.043 Sum_probs=42.8
Q ss_pred ecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccccccCC
Q 007611 268 IGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDD 342 (596)
Q Consensus 268 VG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D 342 (596)
||.+|||||||+++++..... ...++.|++.....+.++ -.+.|+||||-..-.. -....+++++.+..+-|
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~---l~~~~~~~ad~~ilV~D 76 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG---LRDGYYIQGQCAIIMFD 76 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh---hhHHHhcCCCEEEEEEE
Confidence 699999999999999965432 223333444333334432 3678999999853311 11234566665554433
No 442
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.12 E-value=0.0065 Score=61.66 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=49.9
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCC--ChHHHHHhhccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSG--ENDASIALRNCKRI 337 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~--~~~~~~~L~~~~~i 337 (596)
+|.++|..++||||+.+.+...-...-...-|.|.+.....+ .-.+.|+|+||-...-.. .......+++|..+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 589999999999999999997653332233355555443332 237899999999754221 23445678899888
Q ss_pred cccCCCc
Q 007611 338 EKLDDPV 344 (596)
Q Consensus 338 ~~l~D~~ 344 (596)
.+|-|..
T Consensus 81 IyV~D~q 87 (232)
T PF04670_consen 81 IYVFDAQ 87 (232)
T ss_dssp EEEEETT
T ss_pred EEEEEcc
Confidence 8776654
No 443
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.11 E-value=0.0051 Score=67.58 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=23.1
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
+..++|+++|..++|||||+.+|.+.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCe
Confidence 35789999999999999999999763
No 444
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.11 E-value=0.026 Score=53.86 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=36.4
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcHH-HHHHHHHh--CCCCceeEEeeccCCCC
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCID-MEKMVMKA--GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~~-le~~i~~~--~~~K~lILVLNKiDLVp 190 (596)
....+..+|++|+|+|..++.+..... +...+... .++.|+|||.||+||..
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 345567899999999999887654322 22334332 24689999999999853
No 445
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=96.09 E-value=0.01 Score=56.39 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=37.0
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
..+..+|+||+|.|+.+|.+.... .+...+....++.|+|+|.||+||++..
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 120 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccCh
Confidence 356789999999999988654321 2233343333578999999999998643
No 446
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.08 E-value=0.032 Score=56.52 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPL 159 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl 159 (596)
.+.+++..++..+|++|.|+|+.++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~~ 91 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKPE 91 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcch
Confidence 46677888999999999999986654
No 447
>PRK00007 elongation factor G; Reviewed
Probab=96.08 E-value=0.016 Score=67.86 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCe
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPA 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~pt 207 (596)
|..+....+..+|++|.|+||..........+..++... ++|+|+++||+|+++.. ....+..+++.++.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~--~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~ 157 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY--KVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGA 157 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc--CCCEEEEEECCCCCCCC-HHHHHHHHHHHhCC
Confidence 566889999999999999999988766666666666543 68999999999999754 44455666665443
No 448
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.07 E-value=0.017 Score=56.14 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=35.4
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHH--HHHHHHHhCCCCceeEEeeccCCCC
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCID--MEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~--le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
..+..+|++|+|.|.-+|-+..... ....+....++.|+|||.||+||..
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 4567899999999998886543321 2222333335789999999999964
No 449
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.07 E-value=0.017 Score=58.73 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
|..+....+..+|.+|+|+|+.+........+.+.+.. .++|+|+|+||+|+..
T Consensus 77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~ 130 (237)
T cd04168 77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAG 130 (237)
T ss_pred hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccC
Confidence 66778889999999999999998765433444444443 3789999999999985
No 450
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.07 E-value=0.011 Score=55.77 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCC--cHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLK 199 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr--~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~ 199 (596)
.+...+...+..+|++++|+|+.++.... ...+...+... ..+.|+++|+||+|++....+.....
T Consensus 70 ~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~ 138 (173)
T cd04155 70 AIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAE 138 (173)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHH
Confidence 34455566788999999999998764221 11122222111 13689999999999987544444433
No 451
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.07 E-value=0.02 Score=55.99 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHH-HHHHHHHhCCCCceeEEeeccCCCC-----HHHHHHHHHHHHhcCCeE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCID-MEKMVMKAGPDKHLVLLLNKIDLVP-----RESVEKWLKYLREELPAV 208 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~-le~~i~~~~~~K~lILVLNKiDLVp-----~e~l~~Wl~yLr~~~ptv 208 (596)
|.......+..+|++|+|.|..+|.+..... ..+.+....++-|+|||.||+||.. .+....|.. .+..-
T Consensus 68 ~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~----~~~~~ 143 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAE----RNGMT 143 (189)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHH----HcCCE
Confidence 4433445568999999999999997643321 2222333346789999999999964 334445543 22222
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
.|. .|+..+.|++.++..|..
T Consensus 144 ~~e-----------------------~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 144 FFE-----------------------VSPLCNFNITESFTELAR 164 (189)
T ss_pred EEE-----------------------ecCCCCCCHHHHHHHHHH
Confidence 222 344567788888877754
No 452
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.07 E-value=0.016 Score=57.44 Aligned_cols=98 Identities=16% Similarity=0.075 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCC-CCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGP-DKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAF 210 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~-~K~lILVLNKiDLVp~e~-l~~Wl~yLr~~~ptv~f 210 (596)
|.......+..+|+||+|.|+.+|-+... ..+..+.....+ ..++|||.||+||.+... ...-...+.+.++...|
T Consensus 65 ~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (211)
T cd04111 65 FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred HHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEE
Confidence 43344567788999999999998854221 112222211122 356788999999976321 11122233333332222
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
. .|+..+.|++.+++.|.....
T Consensus 145 e-----------------------~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 145 E-----------------------TSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred E-----------------------EeCCCCCCHHHHHHHHHHHHH
Confidence 2 334556788888888766443
No 453
>PLN03118 Rab family protein; Provisional
Probab=96.01 E-value=0.027 Score=55.56 Aligned_cols=97 Identities=16% Similarity=0.020 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHH--HHHHHHHh--CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCID--MEKMVMKA--GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVA 209 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~--le~~i~~~--~~~K~lILVLNKiDLVp~e~l-~~Wl~yLr~~~ptv~ 209 (596)
|.......+..+|++|+|+|+.++.+..... ....+... ....|+|+|.||+||.+...+ ......+...+....
T Consensus 75 ~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~ 154 (211)
T PLN03118 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLF 154 (211)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEE
Confidence 4444456678999999999998875432211 11222211 235689999999999754322 122222323333222
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
|. .|+....|++.++..|....
T Consensus 155 ~e-----------------------~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 155 LE-----------------------CSAKTRENVEQCFEELALKI 176 (211)
T ss_pred EE-----------------------EeCCCCCCHHHHHHHHHHHH
Confidence 32 23445678888888877554
No 454
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.01 E-value=0.017 Score=54.70 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=35.3
Q ss_pred HhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 142 VIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~-~~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
.+..+|++|+|+|+.++.+... ......+.....+.|+|+|.||+||....
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~ 120 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK 120 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc
Confidence 4567999999999988865322 12223333333479999999999997443
No 455
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=95.99 E-value=0.02 Score=53.67 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=35.8
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh---CCCCceeEEeeccCCCC
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA---GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~---~~~K~lILVLNKiDLVp 190 (596)
.....+..+|++|+|+|+-++-+... ..+...+... ..+.|+|+|.||+||..
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 34556778999999999988754321 1122333332 23789999999999864
No 456
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=95.99 E-value=0.017 Score=53.90 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=35.1
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHH-hCCCCceeEEeeccCCCCH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMK-AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~-~~~~K~lILVLNKiDLVp~ 191 (596)
....+..+|.+|+|.|..++-+.... .+..++.. ...+.|+|||.||+||.+.
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 34467789999999998777543221 12222221 1247899999999999754
No 457
>PLN00043 elongation factor 1-alpha; Provisional
Probab=95.98 E-value=0.01 Score=65.87 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.9
Q ss_pred ccceEEEeecCCCCCcchHHHhhh
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLK 283 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~ 283 (596)
+..++|+++|+.+.|||||+-+|+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll 28 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLI 28 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHH
Confidence 467899999999999999999887
No 458
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=95.97 E-value=0.0045 Score=68.58 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=59.4
Q ss_pred cccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcccc-----ccccCCCCceeeeEEEE--eCC
Q 007611 235 LQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHV-----ANVGATPGLTRSMQEVQ--LDK 307 (596)
Q Consensus 235 ~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv-----~~vs~~PgtTr~~q~v~--l~~ 307 (596)
.++.+..|...|+.+...- ....+.|+.||.+|.|++++||++...-- ..-++.||||-....+. +..
T Consensus 287 ~~akk~~g~r~l~~~~~~~-----ag~~~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~ 361 (572)
T KOG1249|consen 287 VSAKKDMGERDLLALETGD-----AGKAGPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKR 361 (572)
T ss_pred hhhHhhhhHHHHHHhhhhc-----cccccchHHhhhhhhccchhhhhhhhhhccchhccccCCCCcccccceeeeccccc
Confidence 3445566766666554432 23578899999999999999999984322 23578999998766554 455
Q ss_pred cEEEEecCCCccCC
Q 007611 308 NVKLLDCPGVVMLK 321 (596)
Q Consensus 308 ~i~LiDTPGI~~~~ 321 (596)
.=.++||||++.+.
T Consensus 362 ~~w~YDTPG~~~~~ 375 (572)
T KOG1249|consen 362 GAWLYDTPGVLNPN 375 (572)
T ss_pred cceeecCCCccChh
Confidence 67899999999874
No 459
>PLN03108 Rab family protein; Provisional
Probab=95.94 E-value=0.023 Score=56.31 Aligned_cols=57 Identities=21% Similarity=0.101 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|++|+|+|+-+|-+... ..+.........+.|+|+|.||+||...
T Consensus 68 ~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 43444566778999999999988754322 1122222222347899999999999753
No 460
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.94 E-value=0.027 Score=57.20 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCC
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLV 189 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLV 189 (596)
....+..+|+||+|.|.-++.+... ......+....++.|+|||.||+||.
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 3346789999999999998876543 12223344444578999999999995
No 461
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.013 Score=65.33 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=74.6
Q ss_pred EEEeecCCCCCcchHHHhhhcccc--------------ccccCCCCceeeeEEEEe---C---CcEEEEecCCCccCCCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHV--------------ANVGATPGLTRSMQEVQL---D---KNVKLLDCPGVVMLKSG 323 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv--------------~~vs~~PgtTr~~q~v~l---~---~~i~LiDTPGI~~~~~~ 323 (596)
+++||-+--=|||||...|+...- ..+....|+|...|...+ + .-+.||||||-+.....
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 578899999999999999985321 123334588888776443 3 45789999999976443
Q ss_pred ChHHHHHhhccccccccCCCchhHH------HHH-hhCCcchhhhhhCCCCC-CCHHHHHHHHHHHhcc
Q 007611 324 ENDASIALRNCKRIEKLDDPVGPVK------EIL-NRCPANLLISLYKLPSF-DSVDDFLQKVATVRGK 384 (596)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~D~~~~v~------~iL-~~~~~~~L~~l~ki~~~-~~~~e~L~~la~~~g~ 384 (596)
+...|..|+-+.-+.|...-+. ..| -..+...+.++||||.- .+++.....+....+.
T Consensus 142 ---VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 142 ---VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDI 207 (650)
T ss_pred ---ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC
Confidence 3345555665555555432111 112 22345677788999864 4677776666555443
No 462
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=95.93 E-value=0.029 Score=66.29 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
.|.......+..+|++|+|+||.+............+.. .+.|+|+|+||+||..
T Consensus 349 ~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 349 AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPG 403 (787)
T ss_pred cchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccc
Confidence 344555567888999999999998754433333333332 3789999999999964
No 463
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.89 E-value=0.021 Score=55.31 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=35.6
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
.+..+|+||+|.|.-++-+.... .....+....++.|+|||.||+||....
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREAR 120 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCh
Confidence 45679999999998888654322 1223344434578999999999997643
No 464
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=95.87 E-value=0.036 Score=63.67 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
.|.....+....+|++|.|+||.+..........+.... .+.|+|+++||+|+..
T Consensus 147 ~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 147 AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPE 201 (587)
T ss_pred chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECccccc
Confidence 344445567888999999999998754433333333322 3789999999999953
No 465
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=95.85 E-value=0.052 Score=57.06 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHH--HHHHHHH------hCCCCceeEEeeccCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCID--MEKMVMK------AGPDKHLVLLLNKIDLV 189 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~--le~~i~~------~~~~K~lILVLNKiDLV 189 (596)
+=.+|.+=||.|+++++|||.-.|.- +++. +..++.. .-..+|.++|.||||+.
T Consensus 264 lG~~FLrHiER~~~l~fVvD~s~~~~-~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 264 LGYKFLRHIERCKGLLFVVDLSGKQL-RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred ccHHHHHHHHhhceEEEEEECCCccc-CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 44467778899999999999987744 3432 2211111 12368899999999996
No 466
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.83 E-value=0.036 Score=67.14 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
.|..........+|++|+|+|+.+.+..........+... +.|+|+|+||+|+++.+
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~--~iPiIVViNKiDL~~~~ 594 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY--KTPFVVAANKIDLIPGW 594 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc--CCCEEEEEECCCCcccc
Confidence 3444444556779999999999987655544444555443 68999999999998743
No 467
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=95.82 E-value=0.026 Score=54.88 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=36.7
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
...+..+|++|+|.|.-++.+.... .....+....++.|+|||.||+||..
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 3457789999999999888654331 22333444446789999999999953
No 468
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=95.82 E-value=0.046 Score=60.69 Aligned_cols=51 Identities=35% Similarity=0.470 Sum_probs=37.3
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
.....+..+|+||+|+|+.+|.+.... +...+.. .++|+|+|+||+||.+.
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCc
Confidence 345678899999999999988754332 2222221 37899999999999765
No 469
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=95.80 E-value=0.014 Score=56.31 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=33.9
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
.+..+|++|.|.|..++-+.... .....+....+..|+|||.||+||.+
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 35689999999998776543221 12233443445789999999999965
No 470
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=95.76 E-value=0.025 Score=55.67 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=35.4
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
.+..+|+||+|.|.-++.+.... .....+....++.|+|||.||+||..
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 46789999999999988765332 12233444335789999999999964
No 471
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.75 E-value=0.023 Score=54.85 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=36.5
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
...+..+|++|+|.|.-+|.+... ......+....++.|+|||.||+||.+
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 345678999999999988876533 122233444446789999999999964
No 472
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=95.74 E-value=0.021 Score=67.58 Aligned_cols=67 Identities=15% Similarity=0.301 Sum_probs=45.2
Q ss_pred hhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEcc
Q 007611 143 IEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCS 213 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~--~ptv~f~~~ 213 (596)
.+.+|+||.|+||.+. .++..+...+.+ .++|+|+|+||+|+..+..+..-.+.|.+. .|.+++.+.
T Consensus 83 ~~~aD~vI~VvDat~l--er~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~ 151 (772)
T PRK09554 83 SGDADLLINVVDASNL--ERNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVST 151 (772)
T ss_pred ccCCCEEEEEecCCcc--hhhHHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEee
Confidence 3579999999999874 345444444444 379999999999998654444444555544 366666543
No 473
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.70 E-value=0.034 Score=57.21 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ 205 (596)
.|..+....+..+|.+|.|+|+..+.......+.+.+.. .+.|+++|+||+|+.... ...-+..+++.+
T Consensus 76 ~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~~~-~~~~~~~l~~~~ 144 (268)
T cd04170 76 DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRERAD-FDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCCCC-HHHHHHHHHHHh
Confidence 466788889999999999999998765544444444443 368999999999998652 333445555544
No 474
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.64 E-value=0.025 Score=53.44 Aligned_cols=86 Identities=10% Similarity=0.125 Sum_probs=51.4
Q ss_pred hhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC--CCCceeEEeeccCCC---CHHHHHHHHHHHHhcC-CeEEEEcchh
Q 007611 143 IEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG--PDKHLVLLLNKIDLV---PRESVEKWLKYLREEL-PAVAFKCSTQ 215 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~sr~-~~le~~i~~~~--~~K~lILVLNKiDLV---p~e~l~~Wl~yLr~~~-ptv~f~~~~~ 215 (596)
...+|+||+|.|..++-+... ......+.... ++.|++||.||+||. +++....+...|.+.+ ....|.
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e---- 138 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYE---- 138 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEE----
Confidence 357999999999999876543 22222333322 357999999999984 2333333333333332 222222
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHH
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk 251 (596)
.|+..+.|++.++..+.
T Consensus 139 -------------------~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 139 -------------------TCATYGLNVERVFQEAA 155 (158)
T ss_pred -------------------EecCCCCCHHHHHHHHH
Confidence 34456778888887765
No 475
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=95.61 E-value=0.035 Score=54.92 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|++|+|.|+-++.+.... .....+....++.|+|||.||+||..+
T Consensus 57 ~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~ 114 (200)
T smart00176 57 FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR 114 (200)
T ss_pred hhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 333344577899999999999887543221 112223333357899999999998643
No 476
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.57 E-value=0.079 Score=60.89 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
.|.......+..+|++|+|+|+.+.+..........+.. .+.|+|+|+||+|+++
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIP 137 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCch
Confidence 344444456788999999999998543333333344433 3789999999999975
No 477
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.55 E-value=0.008 Score=57.16 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.1
Q ss_pred EEEeecCCCCCcchHHHhhhcc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.+.|+|+.++|||||++.|.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999988754
No 478
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.53 E-value=0.031 Score=59.67 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=54.1
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHhhhc
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANL 221 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~~~ 221 (596)
++..||++|+|++ .|.+.....+..-+.. .--|+|+||+|+++..........++..+....... .
T Consensus 166 i~~~aD~vlvv~~--p~~gd~iq~~k~gi~E----~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~--------~ 231 (332)
T PRK09435 166 VAGMVDFFLLLQL--PGAGDELQGIKKGIME----LADLIVINKADGDNKTAARRAAAEYRSALRLLRPKD--------P 231 (332)
T ss_pred HHHhCCEEEEEec--CCchHHHHHHHhhhhh----hhheEEeehhcccchhHHHHHHHHHHHHHhcccccc--------c
Confidence 5778999999976 2333222222221221 123899999999987765555555554432110000 0
Q ss_pred CcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 222 ~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.|. .....+|+....|++.|++.|..|.+
T Consensus 232 ~w~-----~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 232 GWQ-----PPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred CCC-----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000 01224556678899999999988654
No 479
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=95.52 E-value=0.022 Score=65.42 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=50.2
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC--CeEEEEcchhHHhhhc
Q 007611 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL--PAVAFKCSTQEQRANL 221 (596)
Q Consensus 144 e~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~--ptv~f~~~~~~~~~~~ 221 (596)
+.+|+|+.|+|+.++ .++..+-..+.. .++|+|+|+||+|+..+..+..-.+.+.+.+ |.++.
T Consensus 71 ~~aDvvI~VvDat~l--er~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~t----------- 135 (591)
T TIGR00437 71 EKPDLVVNVVDASNL--ERNLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPT----------- 135 (591)
T ss_pred cCCCEEEEEecCCcc--hhhHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEE-----------
Confidence 579999999999874 233333233332 4799999999999976543322233444433 44433
Q ss_pred CcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 222 ~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
|+..+.|.++|++.+.+.
T Consensus 136 --------------SA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 136 --------------SATEGRGIERLKDAIRKA 153 (591)
T ss_pred --------------ECCCCCCHHHHHHHHHHH
Confidence 334566777777777553
No 480
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.47 E-value=0.013 Score=64.48 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=25.4
Q ss_pred cceEEEeecCCCCCcchHHHhhh------ccccccccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK------RCHVANVGA 292 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~------~~kv~~vs~ 292 (596)
++..|++||.+||||||++..|. |.+++-|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 35789999999999999999996 556554443
No 481
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=95.47 E-value=0.033 Score=65.25 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
|..+....+..+|++|+|+||.+........+.+.+.. .+.|+|+|+||+|++..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 44577888999999999999998766555555555543 36899999999999864
No 482
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.46 E-value=0.032 Score=55.77 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=35.0
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
.....+|++|+|.|.-++.+.... ...+.+....++.|+|||.||+||...
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~ 132 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhc
Confidence 456789999999999887543221 111223333357899999999999754
No 483
>PTZ00369 Ras-like protein; Provisional
Probab=95.45 E-value=0.042 Score=53.16 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=34.5
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh--CCCCceeEEeeccCCCCH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~--~~~K~lILVLNKiDLVp~ 191 (596)
....+..+|+||+|+|+-++-+... ......+... ..+.|+|+|.||+||.+.
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE 125 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3446678999999999988754211 1122222222 236799999999999653
No 484
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.43 E-value=0.13 Score=57.21 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCC-------CCcHHHHHHHHHhCCCC-ceeEEeeccCC
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLG-------TRCIDMEKMVMKAGPDK-HLVLLLNKIDL 188 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~-------sr~~~le~~i~~~~~~K-~lILVLNKiDL 188 (596)
.+.|.+++...+..+|++|.|+||..+.. ........++.. -+. ++|+++||+|+
T Consensus 95 h~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 95 HRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDD 157 (446)
T ss_pred hHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEcccc
Confidence 45689999999999999999999998741 122222233322 244 47799999994
No 485
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=95.42 E-value=0.028 Score=53.76 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=43.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~ 318 (596)
+.++|.|+|..|+||+|+++.|.+.....++++-|.-.+.-++. +.++.+.|.-|=.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~-~~~L~iwDvGGq~ 71 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYK-GYTLNIWDVGGQK 71 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEec-ceEEEEEEcCCcc
Confidence 46999999999999999999999998777777766543322222 4467777877754
No 486
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=95.38 E-value=0.047 Score=56.51 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
.|..+.+..+..+|.+|+|+|+.+........+.++... .++|+|+++||+|+....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCCCC
Confidence 366678888999999999999987754333333333322 378999999999987643
No 487
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.37 E-value=0.0074 Score=57.86 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=34.4
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPG 316 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPG 316 (596)
.|+|+|.+++|||||++.|.+.........+.+||.+..... +..+.++++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~ 56 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEE 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHH
Confidence 589999999999999999998653334444566665443322 22344554443
No 488
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=95.37 E-value=0.029 Score=54.23 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=36.6
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
...+..+|.+|.|.|.-++.+.... .....+....++-|+|||.||+||.+
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 3466789999999999888765442 12223333345789999999999965
No 489
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.028 Score=61.93 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhC----------CCCceeEEeeccCCCCH
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG----------PDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~----------~~K~lILVLNKiDLVp~ 191 (596)
--....++.++.||||++|+||-.-..+....+++.+...+ ..+|+|+|.||+|++++
T Consensus 337 ~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 337 LGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 34566788999999999999996555555556666655421 13789999999999987
No 490
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.36 E-value=0.02 Score=53.89 Aligned_cols=20 Identities=45% Similarity=0.919 Sum_probs=18.1
Q ss_pred EEeecCCCCCcchHHHhhhc
Q 007611 265 VGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~~ 284 (596)
|+++|.+++|||||+..|..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998874
No 491
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.049 Score=61.40 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=22.4
Q ss_pred cccceEEEeecCCCCCcchHHHhhhc
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
+.....|+|+|.+||||||++..|..
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998874
No 492
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=95.35 E-value=0.042 Score=51.39 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=47.7
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVM 319 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~ 319 (596)
.+.++|+++|.-|+||+||+..|.+..+..+.++-|.......+.-+-++.+.|.-|=-.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~ 74 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRG 74 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccc
Confidence 467999999999999999999999999888888888755444444445778888877643
No 493
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.34 E-value=0.065 Score=50.30 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHH---HHhC-CCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MKAG-PDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i---~~~~-~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|++++|.|.-++-+.. .+..++ .... .+.|+++|.||+||...
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~sf~--~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 62 YQTITKQYYRRAQGIFLVYDISSERSYQ--HIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120 (161)
T ss_pred HHhhHHHHhcCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 4444556678899999999998774321 122222 2222 35789999999999643
No 494
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.026 Score=62.85 Aligned_cols=107 Identities=19% Similarity=0.378 Sum_probs=68.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe--C----CcEEEEecCCCccCCCCChHHHHHhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--D----KNVKLLDCPGVVMLKSGENDASIALRNC 334 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l--~----~~i~LiDTPGI~~~~~~~~~~~~~L~~~ 334 (596)
++.-|.|+|+---|||||+..|.+.+++ .+.--|.|.+.--+++ + ..|.|+||||-........ --..+..|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa-RGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA-RGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh-cCCccccE
Confidence 5677999999999999999999999874 4445589998765543 2 5899999999753311000 00011121
Q ss_pred ccc-cccCCCchh----HHHHHhhCCcchhhhhhCCCCCC
Q 007611 335 KRI-EKLDDPVGP----VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 335 ~~i-~~l~D~~~~----v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
..+ ....|.+-| ....++...-+.++..||+|...
T Consensus 82 aILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE 121 (509)
T ss_pred EEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC
Confidence 111 122333322 22345667778888999999764
No 495
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.019 Score=63.13 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.5
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
...-.|++||.+||||||++..|.+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999988764
No 496
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.023 Score=63.36 Aligned_cols=109 Identities=22% Similarity=0.444 Sum_probs=70.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCChHHHHHhh--cc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGENDASIALR--NC 334 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~~~~~~~L~--~~ 334 (596)
++.-|-|+|+--=||+|||.+|.++.++ .+-.-|+|.++--+.+ +..|+|+||||-... .+|| ++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF--------~aMRaRGA 222 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF--------SAMRARGA 222 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCcHHHH--------HHHHhccC
Confidence 6788999999999999999999999875 4455699999765543 678999999997532 2222 21
Q ss_pred c---cc---cccCCCchh-HHHHHh---hCCcchhhhhhCCCCCC-CHHHHHHHH
Q 007611 335 K---RI---EKLDDPVGP-VKEILN---RCPANLLISLYKLPSFD-SVDDFLQKV 378 (596)
Q Consensus 335 ~---~i---~~l~D~~~~-v~~iL~---~~~~~~L~~l~ki~~~~-~~~e~L~~l 378 (596)
. .+ ....|.+-+ -.+.++ -..-+.++.+|++|.-. +++.....|
T Consensus 223 ~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL 277 (683)
T KOG1145|consen 223 NVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKREL 277 (683)
T ss_pred ccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHH
Confidence 1 11 112343332 222222 23447778889998653 555444433
No 497
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=95.18 E-value=0.014 Score=64.07 Aligned_cols=149 Identities=23% Similarity=0.249 Sum_probs=89.7
Q ss_pred EEeecCCCCCcchHHHhhhcccc--------------ccccCCCCceeeeEEEEe-----C---CcEEEEecCCCccCCC
Q 007611 265 VGVIGLPNVGKSSLINSLKRCHV--------------ANVGATPGLTRSMQEVQL-----D---KNVKLLDCPGVVMLKS 322 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~~~kv--------------~~vs~~PgtTr~~q~v~l-----~---~~i~LiDTPGI~~~~~ 322 (596)
.+||-+---|||||-..|+...- ..+....|.|...|.+.+ + ..+.||||||-+....
T Consensus 12 FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsY 91 (603)
T COG0481 12 FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSY 91 (603)
T ss_pred eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEE
Confidence 56777888899999999984321 012334599999888775 1 3578999999997655
Q ss_pred CChHHHHHhhccccccccCCCchhHH------HHHhh-CCcchhhhhhCCCCC-CCHHHHHHHHHHHhcccccCCcccHH
Q 007611 323 GENDASIALRNCKRIEKLDDPVGPVK------EILNR-CPANLLISLYKLPSF-DSVDDFLQKVATVRGKLKKGGIVDVE 394 (596)
Q Consensus 323 ~~~~~~~~L~~~~~i~~l~D~~~~v~------~iL~~-~~~~~L~~l~ki~~~-~~~~e~L~~la~~~g~l~kggi~di~ 394 (596)
..+ ..|..|--...+.|...-+. .++.. .+.+.+-++|+||.- .+++.....+....|. ...+.+-+|
T Consensus 92 EVS---RSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGi-d~~dav~~S 167 (603)
T COG0481 92 EVS---RSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGI-DASDAVLVS 167 (603)
T ss_pred Eeh---hhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCC-CcchheeEe
Confidence 433 34444544444445432221 12222 244677788999864 4777877777777664 233455556
Q ss_pred HHHHHHHHHHHcCCCCcccCCCCC
Q 007611 395 AAARIILHDWNEGKIPYYTMPPAR 418 (596)
Q Consensus 395 aaa~~~L~d~~~Gki~~~~~pp~~ 418 (596)
|.++..+.++...-+... +||..
T Consensus 168 AKtG~gI~~iLe~Iv~~i-P~P~g 190 (603)
T COG0481 168 AKTGIGIEDVLEAIVEKI-PPPKG 190 (603)
T ss_pred cccCCCHHHHHHHHHhhC-CCCCC
Confidence 666555555554433333 34443
No 498
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.17 E-value=0.046 Score=43.37 Aligned_cols=43 Identities=30% Similarity=0.505 Sum_probs=25.4
Q ss_pred hcCeEEEEEeCCCCCCCCc---HHHHHHHHHhCCCCceeEEeeccC
Q 007611 145 VSDVILEVLDARDPLGTRC---IDMEKMVMKAGPDKHLVLLLNKID 187 (596)
Q Consensus 145 ~sDVIleVlDARdPl~sr~---~~le~~i~~~~~~K~lILVLNKiD 187 (596)
-.++|++++|.-.-=|+.- ..+.+.|+...+++|+|.|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3689999999754433311 124555666677999999999998
No 499
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.10 E-value=0.014 Score=57.17 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=33.5
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ 304 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~ 304 (596)
+..|.|+|.+|||||||++.|+..........+.|||.+....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE 46 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGD 46 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCC
Confidence 4678999999999999999998765323455688998766544
No 500
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=95.08 E-value=0.044 Score=54.16 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhc-CeEEEEEeCCCCCCCCcHHH----HHHHHH---hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 007611 135 FYKELVKVIEVS-DVILEVLDARDPLGTRCIDM----EKMVMK---AGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (596)
Q Consensus 135 ~~kel~kvie~s-DVIleVlDARdPl~sr~~~l----e~~i~~---~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ 205 (596)
|...+...+..+ +.||+|+|+.+... ....+ ..++.. ..++.|+|||.||+||........+..+|.++.
T Consensus 61 ~~~~~~~~~~~~~~~vV~VvD~~~~~~-~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei 138 (203)
T cd04105 61 LRDKLLETLKNSAKGIVFVVDSATFQK-NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKEL 138 (203)
T ss_pred HHHHHHHHHhccCCEEEEEEECccchh-HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHH
Confidence 455666777788 99999999988642 12222 222221 124789999999999986544444555555443
Done!