Query 007611
Match_columns 596
No_of_seqs 452 out of 2732
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:06:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 2E-41 6.8E-46 348.9 23.5 253 134-416 12-279 (282)
2 3cnl_A YLQF, putative uncharac 100.0 4.3E-38 1.5E-42 320.8 13.0 236 135-417 11-248 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 4.6E-23 1.6E-27 219.6 13.2 158 132-321 58-226 (369)
4 3h2y_A GTPase family protein; 99.9 1E-22 3.6E-27 216.8 11.7 159 131-321 55-225 (368)
5 1mky_A Probable GTP-binding pr 99.8 2.3E-20 7.9E-25 202.8 13.3 212 131-369 67-306 (439)
6 2hjg_A GTP-binding protein ENG 99.8 1.6E-20 5.4E-25 203.9 4.0 211 131-369 68-300 (436)
7 4dcu_A GTP-binding protein ENG 99.8 1.9E-19 6.4E-24 196.6 7.9 211 131-369 88-320 (456)
8 1t9h_A YLOQ, probable GTPase E 99.8 3E-19 1E-23 185.7 5.0 142 142-320 83-237 (307)
9 2rcn_A Probable GTPase ENGC; Y 99.7 3.5E-18 1.2E-22 181.0 6.7 155 129-320 114-281 (358)
10 2e87_A Hypothetical protein PH 99.6 1.6E-17 5.6E-22 175.6 0.0 213 132-368 43-293 (357)
11 2yv5_A YJEQ protein; hydrolase 99.6 1.1E-15 3.7E-20 158.4 12.7 141 142-319 76-228 (302)
12 3iev_A GTP-binding protein ERA 99.6 2.9E-17 1E-21 170.4 -5.1 197 261-473 9-227 (308)
13 1u0l_A Probable GTPase ENGC; p 99.6 4.6E-15 1.6E-19 153.5 10.3 144 141-320 80-234 (301)
14 1wf3_A GTP-binding protein; GT 99.5 3.5E-16 1.2E-20 162.1 -0.2 193 261-473 6-219 (301)
15 1ega_A Protein (GTP-binding pr 99.5 1.1E-15 3.9E-20 158.0 -4.9 195 261-472 7-219 (301)
16 4a9a_A Ribosome-interacting GT 99.4 8.5E-14 2.9E-18 148.3 5.7 86 262-348 72-164 (376)
17 1mky_A Probable GTP-binding pr 99.2 6.9E-12 2.4E-16 136.1 5.0 105 264-368 3-123 (439)
18 2qtf_A Protein HFLX, GTP-bindi 99.2 1.5E-12 5.3E-17 138.2 -1.2 203 130-369 69-306 (364)
19 1wxq_A GTP-binding protein; st 99.1 2.8E-12 9.5E-17 137.8 -1.0 79 263-342 1-110 (397)
20 2hjg_A GTP-binding protein ENG 99.1 1.4E-11 4.8E-16 133.5 3.6 107 263-369 4-125 (436)
21 1svi_A GTP-binding protein YSX 99.1 2.3E-11 7.9E-16 115.1 4.6 109 261-369 22-148 (195)
22 3pqc_A Probable GTP-binding pr 99.1 4.2E-11 1.4E-15 112.8 5.4 109 261-369 22-147 (195)
23 4dhe_A Probable GTP-binding pr 99.1 1.8E-11 6.3E-16 118.6 2.5 109 261-369 28-158 (223)
24 3gee_A MNME, tRNA modification 99.1 4.3E-11 1.5E-15 131.4 4.9 112 259-370 230-358 (476)
25 4dcu_A GTP-binding protein ENG 99.1 5.1E-11 1.8E-15 129.8 5.3 107 262-368 23-144 (456)
26 2xtp_A GTPase IMAP family memb 99.0 3.5E-10 1.2E-14 113.2 9.3 83 261-343 21-115 (260)
27 1xzp_A Probable tRNA modificat 99.0 6.6E-11 2.3E-15 130.1 4.1 110 260-369 241-364 (482)
28 3i8s_A Ferrous iron transport 99.0 9.7E-11 3.3E-15 119.2 4.5 105 262-367 3-124 (274)
29 2cxx_A Probable GTP-binding pr 99.0 6.2E-10 2.1E-14 104.4 9.3 56 263-320 2-57 (190)
30 3iby_A Ferrous iron transport 99.0 1.2E-10 4E-15 117.7 4.5 104 263-367 2-122 (256)
31 3def_A T7I23.11 protein; chlor 99.0 5.6E-10 1.9E-14 112.5 9.4 122 245-368 21-164 (262)
32 1h65_A Chloroplast outer envel 99.0 7.2E-10 2.5E-14 112.1 9.8 109 261-369 38-168 (270)
33 1jal_A YCHF protein; nucleotid 99.0 1.1E-10 3.9E-15 123.7 2.8 82 262-344 2-107 (363)
34 3lxw_A GTPase IMAP family memb 99.0 4.5E-10 1.5E-14 112.5 6.3 60 261-320 20-83 (247)
35 2ohf_A Protein OLA1, GTP-bindi 98.9 3.6E-10 1.2E-14 121.1 4.9 83 260-343 20-126 (396)
36 3lxx_A GTPase IMAP family memb 98.9 1.3E-09 4.4E-14 107.8 7.6 62 261-323 28-94 (239)
37 3a1s_A Iron(II) transport prot 98.9 7.6E-10 2.6E-14 111.8 5.9 106 261-367 4-122 (258)
38 1jwy_B Dynamin A GTPase domain 98.9 1.1E-09 3.6E-14 112.5 6.3 34 261-294 23-61 (315)
39 2qpt_A EH domain-containing pr 98.9 1E-09 3.6E-14 122.4 6.3 116 261-377 64-239 (550)
40 3geh_A MNME, tRNA modification 98.9 1.1E-10 3.7E-15 127.7 -1.6 110 260-369 222-344 (462)
41 3b1v_A Ferrous iron uptake tra 98.9 1.5E-09 5E-14 110.7 6.4 104 262-366 3-118 (272)
42 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 9.7E-10 3.3E-14 117.7 5.3 84 260-343 18-125 (392)
43 2gj8_A MNME, tRNA modification 98.9 1.7E-09 5.8E-14 101.4 5.8 60 261-320 3-65 (172)
44 3k53_A Ferrous iron transport 98.9 1.4E-09 5E-14 109.9 5.2 104 262-366 3-120 (271)
45 2j69_A Bacterial dynamin-like 98.8 1.4E-09 5E-14 124.5 5.5 108 261-368 68-243 (695)
46 2dyk_A GTP-binding protein; GT 98.8 9E-10 3.1E-14 100.3 3.0 106 263-368 2-121 (161)
47 2aka_B Dynamin-1; fusion prote 98.8 8E-10 2.7E-14 112.3 2.1 35 261-295 25-64 (299)
48 1lnz_A SPO0B-associated GTP-bi 98.8 2E-09 7E-14 113.3 4.9 106 263-369 159-288 (342)
49 2nzj_A GTP-binding protein REM 98.8 5.7E-09 2E-13 96.3 7.3 107 261-368 3-124 (175)
50 2wji_A Ferrous iron transport 98.8 3.5E-09 1.2E-13 98.1 5.4 58 262-320 3-63 (165)
51 3t5d_A Septin-7; GTP-binding p 98.8 9.8E-09 3.3E-13 104.0 8.5 59 262-320 8-78 (274)
52 2dby_A GTP-binding protein; GD 98.8 2.8E-09 9.6E-14 113.3 4.4 81 263-344 2-110 (368)
53 3qq5_A Small GTP-binding prote 98.8 6.7E-09 2.3E-13 112.3 6.6 109 261-369 33-154 (423)
54 2qu8_A Putative nucleolar GTP- 98.7 7.5E-09 2.6E-13 101.3 6.1 59 261-320 28-89 (228)
55 2wjg_A FEOB, ferrous iron tran 98.7 8.2E-09 2.8E-13 96.8 5.8 59 261-320 6-67 (188)
56 1pui_A ENGB, probable GTP-bind 98.7 6.9E-09 2.3E-13 99.4 5.1 61 260-320 24-85 (210)
57 1ek0_A Protein (GTP-binding pr 98.7 1.3E-08 4.5E-13 93.0 6.5 104 262-368 3-121 (170)
58 1f5n_A Interferon-induced guan 98.7 1E-08 3.4E-13 115.1 6.5 70 246-320 27-104 (592)
59 1zj6_A ADP-ribosylation factor 98.7 2.6E-09 8.8E-14 100.7 1.1 105 261-369 15-131 (187)
60 3clv_A RAB5 protein, putative; 98.7 2E-08 6.7E-13 94.4 7.1 103 261-366 6-158 (208)
61 1upt_A ARL1, ADP-ribosylation 98.7 1.8E-08 6.2E-13 92.5 6.7 105 260-369 5-122 (171)
62 2ged_A SR-beta, signal recogni 98.7 1.9E-08 6.7E-13 94.8 6.9 134 243-380 26-183 (193)
63 3q72_A GTP-binding protein RAD 98.7 1.1E-08 3.8E-13 93.7 4.9 104 262-368 2-119 (166)
64 3cph_A RAS-related protein SEC 98.6 3.5E-08 1.2E-12 94.4 6.9 104 260-367 18-137 (213)
65 1kao_A RAP2A; GTP-binding prot 98.6 3.7E-08 1.3E-12 89.5 6.7 101 262-367 3-120 (167)
66 2h17_A ADP-ribosylation factor 98.6 2.3E-08 7.8E-13 93.8 5.3 105 261-369 20-136 (181)
67 1moz_A ARL1, ADP-ribosylation 98.6 2.8E-08 9.6E-13 92.6 5.9 104 261-369 17-133 (183)
68 2efe_B Small GTP-binding prote 98.6 9.1E-08 3.1E-12 88.8 8.7 105 261-368 11-130 (181)
69 4dsu_A GTPase KRAS, isoform 2B 98.6 9E-08 3.1E-12 89.3 8.6 103 261-368 3-122 (189)
70 1fzq_A ADP-ribosylation factor 98.6 2.8E-08 9.4E-13 93.6 5.1 105 261-369 15-131 (181)
71 3j2k_7 ERF3, eukaryotic polype 98.6 1.4E-08 4.8E-13 110.2 3.4 106 260-368 15-168 (439)
72 2fg5_A RAB-22B, RAS-related pr 98.6 3.9E-08 1.3E-12 93.2 6.0 104 261-367 22-140 (192)
73 2g6b_A RAS-related protein RAB 98.6 8.9E-08 3E-12 88.7 8.1 107 260-369 8-130 (180)
74 2x77_A ADP-ribosylation factor 98.6 2.6E-08 8.8E-13 93.8 4.4 105 261-369 21-137 (189)
75 1c1y_A RAS-related protein RAP 98.6 9.5E-08 3.2E-12 87.1 8.0 102 262-368 3-121 (167)
76 1x3s_A RAS-related protein RAB 98.6 7.5E-08 2.6E-12 90.4 7.4 104 261-367 14-133 (195)
77 1u8z_A RAS-related protein RAL 98.6 6.1E-08 2.1E-12 88.1 6.4 102 261-367 3-121 (168)
78 3t5g_A GTP-binding protein RHE 98.6 6.6E-08 2.2E-12 90.0 6.6 104 261-368 5-124 (181)
79 2x2e_A Dynamin-1; nitration, h 98.6 6.3E-08 2.2E-12 101.8 7.2 35 261-295 30-69 (353)
80 2h57_A ADP-ribosylation factor 98.6 5.2E-08 1.8E-12 91.9 6.0 104 261-369 20-140 (190)
81 2oil_A CATX-8, RAS-related pro 98.6 9.5E-08 3.2E-12 90.2 7.6 106 260-368 23-143 (193)
82 2www_A Methylmalonic aciduria 98.6 1.4E-08 4.9E-13 106.9 2.0 102 261-368 73-225 (349)
83 3gj0_A GTP-binding nuclear pro 98.5 5E-08 1.7E-12 94.5 5.5 105 261-368 14-132 (221)
84 1z0j_A RAB-22, RAS-related pro 98.5 6.9E-08 2.3E-12 88.3 6.1 80 261-343 5-88 (170)
85 3r7w_A Gtpase1, GTP-binding pr 98.5 3.5E-08 1.2E-12 101.9 4.5 108 262-369 3-129 (307)
86 1z06_A RAS-related protein RAB 98.5 1.2E-07 4E-12 89.4 7.4 106 261-368 19-140 (189)
87 1z2a_A RAS-related protein RAB 98.5 6.4E-08 2.2E-12 88.4 5.5 105 261-368 4-122 (168)
88 2p5s_A RAS and EF-hand domain 98.5 7.1E-08 2.4E-12 91.9 6.0 104 261-367 27-145 (199)
89 4bas_A ADP-ribosylation factor 98.5 3.6E-08 1.2E-12 93.1 3.8 105 261-369 16-141 (199)
90 1m2o_B GTP-binding protein SAR 98.5 6.9E-08 2.4E-12 91.7 5.9 103 261-368 22-137 (190)
91 2gf9_A RAS-related protein RAB 98.5 1.4E-07 4.7E-12 88.9 7.8 105 261-368 21-140 (189)
92 2lkc_A Translation initiation 98.5 2.7E-08 9.3E-13 92.1 2.7 106 260-369 6-121 (178)
93 3tkl_A RAS-related protein RAB 98.5 1.6E-07 5.4E-12 88.4 8.0 104 261-368 15-134 (196)
94 2atv_A RERG, RAS-like estrogen 98.5 1.6E-07 5.3E-12 89.2 7.8 103 261-367 27-144 (196)
95 2ce2_X GTPase HRAS; signaling 98.5 3.3E-07 1.1E-11 82.9 9.6 102 262-368 3-121 (166)
96 1zbd_A Rabphilin-3A; G protein 98.5 1.1E-07 3.9E-12 90.4 6.7 105 261-368 7-126 (203)
97 1vg8_A RAS-related protein RAB 98.5 9.9E-08 3.4E-12 90.8 6.1 105 261-368 7-130 (207)
98 2a9k_A RAS-related protein RAL 98.5 1.4E-07 4.7E-12 87.7 6.8 102 261-367 17-135 (187)
99 1r8s_A ADP-ribosylation factor 98.5 1E-07 3.6E-12 86.9 5.8 102 263-369 1-115 (164)
100 3kkq_A RAS-related protein M-R 98.5 4.1E-07 1.4E-11 84.7 10.0 103 261-368 17-136 (183)
101 1g16_A RAS-related protein SEC 98.5 1E-07 3.6E-12 87.1 5.8 102 262-367 3-120 (170)
102 2bov_A RAla, RAS-related prote 98.5 2.1E-07 7.2E-12 88.3 7.9 103 261-368 13-132 (206)
103 3zvr_A Dynamin-1; hydrolase, D 98.5 2.1E-07 7.3E-12 107.0 9.1 55 239-293 22-82 (772)
104 4djt_A GTP-binding nuclear pro 98.5 1.1E-07 3.9E-12 91.5 5.8 105 261-368 10-130 (218)
105 1f6b_A SAR1; gtpases, N-termin 98.5 5.5E-08 1.9E-12 93.1 3.5 103 261-368 24-139 (198)
106 2bcg_Y Protein YP2, GTP-bindin 98.5 2.3E-07 7.8E-12 88.6 7.8 104 261-368 7-126 (206)
107 1z0f_A RAB14, member RAS oncog 98.5 2.1E-07 7.3E-12 85.8 7.2 80 261-343 14-97 (179)
108 1zd9_A ADP-ribosylation factor 98.5 1.1E-07 3.8E-12 89.8 5.2 105 260-369 20-138 (188)
109 3oes_A GTPase rhebl1; small GT 98.5 1.5E-07 5.1E-12 89.8 6.1 103 261-368 23-142 (201)
110 3bc1_A RAS-related protein RAB 98.4 1.8E-07 6E-12 87.4 6.3 105 261-368 10-140 (195)
111 2fn4_A P23, RAS-related protei 98.4 1.4E-07 4.8E-12 87.2 5.5 103 261-368 8-127 (181)
112 1ksh_A ARF-like protein 2; sma 98.4 1.9E-07 6.4E-12 87.4 5.9 105 261-369 17-133 (186)
113 1r2q_A RAS-related protein RAB 98.4 2.6E-07 9E-12 84.2 6.4 80 261-343 5-88 (170)
114 2b6h_A ADP-ribosylation factor 98.4 1.5E-07 5.1E-12 89.5 4.8 104 261-369 28-144 (192)
115 2fh5_B SR-beta, signal recogni 98.4 2.7E-07 9.1E-12 88.7 6.6 115 261-379 6-141 (214)
116 3tr5_A RF-3, peptide chain rel 98.4 1.2E-07 4.1E-12 105.3 4.6 120 261-383 12-163 (528)
117 3izq_1 HBS1P, elongation facto 98.4 9.4E-08 3.2E-12 107.9 3.6 107 260-369 165-319 (611)
118 2a5j_A RAS-related protein RAB 98.4 2.3E-07 8E-12 87.6 5.6 105 261-368 20-139 (191)
119 1wms_A RAB-9, RAB9, RAS-relate 98.4 3E-07 1E-11 84.9 6.2 59 261-319 6-68 (177)
120 3l0i_B RAS-related protein RAB 98.4 1.5E-07 5.1E-12 89.6 4.1 104 261-368 32-151 (199)
121 3mca_A HBS1, elongation factor 98.4 8.2E-08 2.8E-12 108.0 2.6 60 260-319 175-267 (592)
122 3lvq_E ARF-GAP with SH3 domain 98.4 1.6E-07 5.4E-12 103.0 4.6 103 261-368 321-436 (497)
123 3cpj_B GTP-binding protein YPT 98.4 4.1E-07 1.4E-11 88.4 6.5 80 261-343 12-95 (223)
124 3p26_A Elongation factor 1 alp 98.4 1.8E-07 6.2E-12 102.6 4.3 107 260-369 31-185 (483)
125 3iev_A GTP-binding protein ERA 98.4 7.4E-07 2.5E-11 92.0 8.7 104 129-256 76-182 (308)
126 2xex_A Elongation factor G; GT 98.4 3.4E-07 1.2E-11 104.8 6.7 120 261-383 9-156 (693)
127 3tw8_B RAS-related protein RAB 98.3 4.7E-07 1.6E-11 83.5 6.4 79 261-343 8-91 (181)
128 3t34_A Dynamin-related protein 98.3 3E-07 1E-11 96.8 5.5 28 263-290 35-62 (360)
129 2hxs_A RAB-26, RAS-related pro 98.3 5.2E-07 1.8E-11 83.3 6.1 80 261-343 5-89 (178)
130 1z08_A RAS-related protein RAB 98.3 6.2E-07 2.1E-11 82.0 6.4 58 261-318 5-66 (170)
131 2y8e_A RAB-protein 6, GH09086P 98.3 6.7E-07 2.3E-11 82.3 6.3 79 261-343 13-96 (179)
132 2iwr_A Centaurin gamma 1; ANK 98.3 6.4E-07 2.2E-11 83.0 6.1 74 261-343 6-82 (178)
133 3t1o_A Gliding protein MGLA; G 98.3 1E-06 3.5E-11 82.5 7.6 105 261-368 13-148 (198)
134 2erx_A GTP-binding protein DI- 98.3 4.2E-07 1.4E-11 83.0 4.7 76 262-342 3-83 (172)
135 3q85_A GTP-binding protein REM 98.3 5.5E-07 1.9E-11 82.4 5.5 104 263-368 3-122 (169)
136 1udx_A The GTP-binding protein 98.3 6.3E-07 2.2E-11 96.6 6.7 108 261-369 156-283 (416)
137 2hup_A RAS-related protein RAB 98.3 7.1E-07 2.4E-11 85.4 6.4 105 261-368 28-147 (201)
138 2il1_A RAB12; G-protein, GDP, 98.3 7.2E-07 2.5E-11 84.5 6.4 80 261-343 25-108 (192)
139 1nrj_B SR-beta, signal recogni 98.3 6.3E-07 2.1E-11 86.3 5.4 102 261-369 11-134 (218)
140 2fv8_A H6, RHO-related GTP-bin 98.3 3.6E-07 1.2E-11 87.7 3.5 106 261-370 24-144 (207)
141 3izy_P Translation initiation 98.3 1.1E-07 3.9E-12 105.6 -0.2 104 261-368 3-117 (537)
142 3con_A GTPase NRAS; structural 98.3 1.1E-06 3.6E-11 82.5 6.5 77 261-342 20-101 (190)
143 3llu_A RAS-related GTP-binding 98.3 6.1E-07 2.1E-11 85.3 4.9 109 261-369 19-143 (196)
144 1ky3_A GTP-binding protein YPT 98.2 5.8E-07 2E-11 83.0 4.6 58 261-318 7-69 (182)
145 1x3s_A RAS-related protein RAB 98.2 1.2E-06 4E-11 82.2 6.8 111 139-277 81-194 (195)
146 2c78_A Elongation factor TU-A; 98.2 3E-07 1E-11 98.5 2.9 107 261-370 10-143 (405)
147 3dpu_A RAB family protein; roc 98.2 4.9E-07 1.7E-11 100.3 4.7 126 240-368 13-163 (535)
148 2bme_A RAB4A, RAS-related prot 98.2 9.3E-07 3.2E-11 82.4 5.9 79 261-343 9-92 (186)
149 3c5c_A RAS-like protein 12; GD 98.2 1.2E-06 4E-11 82.8 6.3 101 261-367 20-139 (187)
150 3o47_A ADP-ribosylation factor 98.2 7.4E-07 2.5E-11 92.9 5.3 102 261-369 164-280 (329)
151 1wf3_A GTP-binding protein; GT 98.2 2.2E-06 7.6E-11 88.3 8.6 105 127-256 68-173 (301)
152 3th5_A RAS-related C3 botulinu 97.5 1.6E-07 5.5E-12 89.6 0.0 104 261-369 29-148 (204)
153 2h5e_A Peptide chain release f 98.2 1.5E-06 5.1E-11 96.5 7.5 120 261-383 12-163 (529)
154 4dhe_A Probable GTP-binding pr 98.2 4.8E-06 1.6E-10 80.2 10.0 90 143-256 113-211 (223)
155 2yc2_C IFT27, small RAB-relate 98.2 6.1E-07 2.1E-11 85.0 3.5 105 261-368 19-145 (208)
156 2elf_A Protein translation elo 98.2 1.3E-06 4.5E-11 92.7 6.2 91 264-367 23-125 (370)
157 2gf0_A GTP-binding protein DI- 98.2 1.8E-06 6.1E-11 81.3 6.5 79 261-343 7-89 (199)
158 2ew1_A RAS-related protein RAB 98.2 1.9E-06 6.4E-11 82.9 6.5 80 261-343 25-108 (201)
159 2o52_A RAS-related protein RAB 98.2 1.3E-06 4.6E-11 83.3 5.4 80 261-343 24-107 (200)
160 1zun_B Sulfate adenylate trans 98.2 2E-06 6.9E-11 92.9 7.4 107 260-369 22-171 (434)
161 1wb1_A Translation elongation 98.2 7.7E-07 2.6E-11 97.7 3.7 106 261-369 18-139 (482)
162 3dz8_A RAS-related protein RAB 98.1 6.9E-07 2.4E-11 84.3 2.5 80 261-343 22-105 (191)
163 1f60_A Elongation factor EEF1A 98.1 4.1E-07 1.4E-11 99.2 1.1 105 261-368 6-158 (458)
164 2j1l_A RHO-related GTP-binding 98.1 2.3E-06 8E-11 82.6 6.2 105 261-370 33-153 (214)
165 2q3h_A RAS homolog gene family 98.1 1.9E-06 6.4E-11 81.7 5.1 105 260-369 18-138 (201)
166 4gzl_A RAS-related C3 botulinu 98.1 2.8E-06 9.4E-11 81.4 6.2 78 261-343 29-111 (204)
167 2atx_A Small GTP binding prote 98.1 1.7E-06 6E-11 81.5 4.6 105 261-370 17-137 (194)
168 1mh1_A RAC1; GTP-binding, GTPa 98.1 3.4E-06 1.2E-10 78.2 6.5 78 261-343 4-86 (186)
169 3q5d_A Atlastin-1; G protein, 98.1 1.5E-06 5.3E-11 94.3 4.7 60 261-321 66-154 (447)
170 2fu5_C RAS-related protein RAB 98.1 1.2E-06 4.1E-11 81.6 3.2 104 261-368 7-126 (183)
171 2gco_A H9, RHO-related GTP-bin 98.1 2.9E-06 1E-10 80.8 5.8 106 261-370 24-144 (201)
172 2qm8_A GTPase/ATPase; G protei 98.1 5.7E-07 2E-11 94.2 0.9 37 260-296 53-95 (337)
173 1dar_A EF-G, elongation factor 98.1 3.2E-06 1.1E-10 96.7 7.1 120 261-383 11-158 (691)
174 1zo1_I IF2, translation initia 98.1 4.9E-07 1.7E-11 99.6 -0.0 104 261-368 3-116 (501)
175 2cjw_A GTP-binding protein GEM 98.1 1.7E-06 5.7E-11 82.4 3.5 58 262-319 6-68 (192)
176 1d2e_A Elongation factor TU (E 98.1 1.8E-06 6.3E-11 92.2 4.0 107 261-370 2-134 (397)
177 3reg_A RHO-like small GTPase; 98.0 3.3E-06 1.1E-10 79.7 5.3 77 261-342 22-103 (194)
178 3sjy_A Translation initiation 98.0 1.6E-06 5.5E-11 92.8 3.3 106 261-369 7-143 (403)
179 3cbq_A GTP-binding protein REM 98.0 2.5E-06 8.4E-11 81.4 4.2 79 261-342 22-105 (195)
180 1m7b_A RND3/RHOE small GTP-bin 98.0 5.5E-06 1.9E-10 77.6 6.4 78 261-342 6-87 (184)
181 3p32_A Probable GTPase RV1496/ 98.0 4.5E-06 1.5E-10 87.8 6.1 102 261-368 78-230 (355)
182 2p67_A LAO/AO transport system 98.0 3.3E-06 1.1E-10 88.4 4.9 104 260-369 54-208 (341)
183 3bwd_D RAC-like GTP-binding pr 98.0 2E-06 6.9E-11 79.6 2.6 78 261-343 7-89 (182)
184 3cb4_D GTP-binding protein LEP 98.0 5.8E-06 2E-10 93.1 6.8 118 263-383 5-152 (599)
185 2f7s_A C25KG, RAS-related prot 98.0 3.2E-06 1.1E-10 81.2 3.9 104 261-368 24-154 (217)
186 2g3y_A GTP-binding protein GEM 98.0 3.9E-06 1.3E-10 81.9 4.5 58 261-318 36-98 (211)
187 3pqc_A Probable GTP-binding pr 98.0 1.3E-05 4.4E-10 74.8 7.7 90 141-254 100-192 (195)
188 2rdo_7 EF-G, elongation factor 98.0 1.2E-05 4.1E-10 92.2 8.8 120 261-383 9-163 (704)
189 2f9l_A RAB11B, member RAS onco 97.9 1E-05 3.5E-10 76.9 6.7 59 262-320 5-67 (199)
190 1g7s_A Translation initiation 97.9 1.9E-06 6.3E-11 97.0 1.3 103 261-368 4-135 (594)
191 3cb4_D GTP-binding protein LEP 97.9 1.2E-05 4.2E-10 90.4 8.0 125 135-285 84-216 (599)
192 2zej_A Dardarin, leucine-rich 97.9 7.1E-06 2.4E-10 77.0 5.0 58 262-319 2-68 (184)
193 2j0v_A RAC-like GTP-binding pr 97.9 9.9E-06 3.4E-10 77.5 6.1 78 261-343 8-90 (212)
194 3ihw_A Centg3; RAS, centaurin, 97.9 1.1E-05 3.9E-10 75.9 6.4 73 261-342 19-94 (184)
195 1gwn_A RHO-related GTP-binding 97.9 1.2E-05 4E-10 77.5 6.3 106 261-370 27-147 (205)
196 1jny_A EF-1-alpha, elongation 97.9 3.9E-06 1.3E-10 90.7 3.0 106 261-369 5-158 (435)
197 3q3j_B RHO-related GTP-binding 97.9 1.4E-05 4.7E-10 77.3 6.3 106 261-370 26-146 (214)
198 3sjy_A Translation initiation 97.9 3.9E-05 1.3E-09 82.0 10.4 123 133-273 86-211 (403)
199 2ywe_A GTP-binding protein LEP 97.9 7.3E-06 2.5E-10 92.2 4.9 119 262-383 6-154 (600)
200 1n0u_A EF-2, elongation factor 97.9 8.6E-06 3E-10 95.2 5.2 105 261-368 18-163 (842)
201 1svi_A GTP-binding protein YSX 97.9 5.2E-05 1.8E-09 71.0 9.7 96 134-254 91-193 (195)
202 1oix_A RAS-related protein RAB 97.8 1.8E-05 6.3E-10 74.9 6.6 60 261-320 28-91 (191)
203 1r5b_A Eukaryotic peptide chai 97.8 6.6E-06 2.3E-10 89.8 3.5 105 261-368 42-194 (467)
204 2qag_A Septin-2, protein NEDD5 97.8 1.1E-05 3.7E-10 85.2 4.2 60 261-320 36-108 (361)
205 1ega_A Protein (GTP-binding pr 97.8 1.8E-05 6.2E-10 81.3 5.4 97 135-256 78-175 (301)
206 2wkq_A NPH1-1, RAS-related C3 97.7 2.9E-05 9.9E-10 79.2 6.2 79 260-343 153-236 (332)
207 2dy1_A Elongation factor G; tr 97.7 4.2E-05 1.5E-09 87.1 7.1 120 261-383 8-154 (665)
208 2dyk_A GTP-binding protein; GT 97.7 3.8E-05 1.3E-09 69.3 5.3 58 132-191 66-123 (161)
209 1kk1_A EIF2gamma; initiation o 97.7 2.3E-05 7.9E-10 83.9 4.3 106 261-369 9-151 (410)
210 1s0u_A EIF-2-gamma, translatio 97.6 3.2E-05 1.1E-09 82.7 5.0 106 261-369 7-149 (408)
211 3vqt_A RF-3, peptide chain rel 97.6 5.8E-05 2E-09 84.1 7.2 119 262-383 31-181 (548)
212 3avx_A Elongation factor TS, e 97.6 2.1E-05 7.1E-10 93.7 3.3 108 260-370 294-427 (1289)
213 2h57_A ADP-ribosylation factor 97.6 8.9E-05 3E-09 69.5 6.7 93 140-254 85-185 (190)
214 1tq4_A IIGP1, interferon-induc 97.6 9E-05 3.1E-09 79.8 7.6 60 261-320 68-133 (413)
215 3t5g_A GTP-binding protein RHE 97.6 5.3E-05 1.8E-09 70.1 5.1 99 142-277 74-180 (181)
216 1wb1_A Translation elongation 97.6 0.00017 5.7E-09 79.1 9.7 99 133-255 84-188 (482)
217 2qag_B Septin-6, protein NEDD5 97.5 6.8E-05 2.3E-09 80.9 6.0 58 263-320 43-108 (427)
218 1upt_A ARL1, ADP-ribosylation 97.5 8E-05 2.7E-09 67.8 5.6 93 140-254 69-167 (171)
219 2wsm_A Hydrogenase expression/ 97.5 1.6E-05 5.3E-10 76.7 0.6 37 261-297 29-70 (221)
220 1zd9_A ADP-ribosylation factor 97.5 0.00012 4.2E-09 68.6 6.8 98 135-254 80-183 (188)
221 1r8s_A ADP-ribosylation factor 97.5 0.0001 3.4E-09 66.8 5.9 96 137-254 59-160 (164)
222 3sop_A Neuronal-specific septi 97.5 5.2E-05 1.8E-09 76.9 4.1 59 262-320 2-73 (270)
223 4dkx_A RAS-related protein RAB 97.5 8.7E-05 3E-09 72.6 5.4 75 261-338 12-90 (216)
224 3cph_A RAS-related protein SEC 97.5 9.2E-05 3.1E-09 70.3 5.4 53 139-191 86-140 (213)
225 1ek0_A Protein (GTP-binding pr 97.5 5.6E-05 1.9E-09 68.5 3.6 93 138-253 68-166 (170)
226 1xzp_A Probable tRNA modificat 97.4 0.00031 1.1E-08 77.1 9.7 87 138-253 316-402 (482)
227 1g16_A RAS-related protein SEC 97.4 0.00012 4.2E-09 66.4 5.5 89 139-254 69-163 (170)
228 1kk1_A EIF2gamma; initiation o 97.4 0.00029 9.9E-09 75.3 9.3 98 132-255 93-199 (410)
229 2j37_W Signal recognition part 97.4 7.4E-05 2.5E-09 82.4 4.6 32 261-292 100-137 (504)
230 1zj6_A ADP-ribosylation factor 97.4 0.0003 1E-08 65.7 8.0 94 140-255 78-177 (187)
231 1ksh_A ARF-like protein 2; sma 97.4 0.00011 3.6E-09 68.5 4.8 99 135-255 75-179 (186)
232 2qu8_A Putative nucleolar GTP- 97.4 0.0009 3.1E-08 64.8 11.7 98 136-255 99-204 (228)
233 1c1y_A RAS-related protein RAP 97.4 0.00016 5.5E-09 65.4 5.8 92 140-253 69-164 (167)
234 2il1_A RAB12; G-protein, GDP, 97.4 0.00015 5.3E-09 68.2 5.8 97 135-253 88-187 (192)
235 4bas_A ADP-ribosylation factor 97.4 0.00013 4.5E-09 68.4 5.0 93 140-255 81-188 (199)
236 3tkl_A RAS-related protein RAB 97.4 0.00018 6.2E-09 67.2 5.9 54 138-191 81-136 (196)
237 1vg8_A RAS-related protein RAB 97.4 0.00015 5.2E-09 68.5 5.4 91 141-254 76-173 (207)
238 2j1l_A RHO-related GTP-binding 97.4 0.00018 6.2E-09 69.1 6.0 58 137-194 97-156 (214)
239 3t1o_A Gliding protein MGLA; G 97.4 0.00022 7.4E-09 66.4 6.2 93 138-254 90-190 (198)
240 2f7s_A C25KG, RAS-related prot 97.4 0.00032 1.1E-08 67.1 7.4 57 133-191 95-156 (217)
241 2ce2_X GTPase HRAS; signaling 97.3 0.00012 4.1E-09 65.8 4.1 90 140-254 69-163 (166)
242 1moz_A ARL1, ADP-ribosylation 97.3 0.0005 1.7E-08 63.4 8.5 92 140-255 80-179 (183)
243 1jwy_B Dynamin A GTPase domain 97.3 0.00025 8.5E-09 72.3 6.9 101 130-256 152-262 (315)
244 2qnr_A Septin-2, protein NEDD5 97.3 9.8E-05 3.3E-09 75.9 3.8 58 262-319 18-88 (301)
245 1lnz_A SPO0B-associated GTP-bi 97.3 0.00016 5.5E-09 75.9 5.5 94 136-255 227-329 (342)
246 1mh1_A RAC1; GTP-binding, GTPa 97.3 0.00016 5.4E-09 66.8 4.8 53 141-193 72-126 (186)
247 2x77_A ADP-ribosylation factor 97.3 0.00018 6E-09 67.2 5.0 92 142-255 86-183 (189)
248 2b6h_A ADP-ribosylation factor 97.3 0.00031 1.1E-08 66.3 6.7 91 139-253 90-188 (192)
249 1s0u_A EIF-2-gamma, translatio 97.3 0.00049 1.7E-08 73.5 9.0 98 132-255 91-197 (408)
250 2h17_A ADP-ribosylation factor 97.3 0.00072 2.5E-08 62.8 9.0 90 140-252 83-179 (181)
251 2gf0_A GTP-binding protein DI- 97.3 0.00025 8.7E-09 66.3 5.8 95 138-255 72-170 (199)
252 1yrb_A ATP(GTP)binding protein 97.3 4.6E-05 1.6E-09 75.4 0.7 36 260-295 12-52 (262)
253 2fh5_B SR-beta, signal recogni 97.3 0.00033 1.1E-08 66.8 6.7 65 139-203 72-142 (214)
254 3bc1_A RAS-related protein RAB 97.3 0.00019 6.5E-09 66.5 4.9 56 135-190 83-141 (195)
255 3c5h_A Glucocorticoid receptor 97.3 0.00015 5.1E-09 72.4 4.4 25 261-285 18-51 (255)
256 2qag_C Septin-7; cell cycle, c 97.3 8.7E-05 3E-09 80.0 2.8 58 262-320 31-101 (418)
257 1r2q_A RAS-related protein RAB 97.3 0.00017 5.7E-09 65.3 4.3 94 137-254 70-167 (170)
258 3bwd_D RAC-like GTP-binding pr 97.3 0.00018 6.1E-09 66.3 4.4 52 141-192 75-128 (182)
259 2y8e_A RAB-protein 6, GH09086P 97.3 0.00016 5.5E-09 66.2 4.0 92 138-254 79-175 (179)
260 2efe_B Small GTP-binding prote 97.3 0.00022 7.6E-09 65.6 4.9 93 138-254 77-173 (181)
261 1z0j_A RAB-22, RAS-related pro 97.2 0.00022 7.5E-09 64.7 4.8 94 138-254 71-167 (170)
262 3reg_A RHO-like small GTPase; 97.2 0.00013 4.3E-09 68.6 3.2 91 139-255 88-187 (194)
263 2lkc_A Translation initiation 97.2 0.00055 1.9E-08 62.7 7.5 49 141-191 74-122 (178)
264 2g6b_A RAS-related protein RAB 97.2 0.00018 6.2E-09 66.1 4.0 94 135-255 73-173 (180)
265 3j25_A Tetracycline resistance 97.2 0.00013 4.5E-09 82.7 3.5 114 264-380 4-145 (638)
266 3llu_A RAS-related GTP-binding 97.2 0.00091 3.1E-08 63.1 8.8 53 140-192 90-145 (196)
267 1wms_A RAB-9, RAB9, RAS-relate 97.2 0.00036 1.2E-08 63.9 5.7 96 136-254 70-172 (177)
268 2gco_A H9, RHO-related GTP-bin 97.2 0.00039 1.3E-08 65.9 6.1 55 141-195 92-148 (201)
269 1f6b_A SAR1; gtpases, N-termin 97.2 0.00038 1.3E-08 66.1 5.9 50 141-190 88-140 (198)
270 1fzq_A ADP-ribosylation factor 97.2 0.00039 1.3E-08 64.9 5.8 96 137-254 75-176 (181)
271 2hup_A RAS-related protein RAB 97.2 0.00048 1.6E-08 65.5 6.4 93 135-254 91-191 (201)
272 4gzl_A RAS-related C3 botulinu 97.2 0.00016 5.6E-09 68.9 3.0 57 139-195 95-153 (204)
273 2j0v_A RAC-like GTP-binding pr 97.1 0.00023 7.9E-09 67.8 3.9 52 141-192 76-129 (212)
274 2hf9_A Probable hydrogenase ni 97.1 0.00029 9.9E-09 67.9 4.6 35 261-295 37-76 (226)
275 2gj8_A MNME, tRNA modification 97.1 0.00041 1.4E-08 64.4 5.4 89 137-254 75-164 (172)
276 2erx_A GTP-binding protein DI- 97.1 0.00057 1.9E-08 61.9 6.3 94 139-255 68-166 (172)
277 3dz8_A RAS-related protein RAB 97.1 0.00062 2.1E-08 63.8 6.7 94 134-254 84-184 (191)
278 4dsu_A GTPase KRAS, isoform 2B 97.1 0.00041 1.4E-08 64.1 5.4 93 139-254 69-164 (189)
279 2q3h_A RAS homolog gene family 97.1 0.00023 7.8E-09 67.1 3.7 50 142-191 88-139 (201)
280 2p5s_A RAS and EF-hand domain 97.1 0.00032 1.1E-08 66.3 4.7 54 136-189 91-146 (199)
281 1z0f_A RAB14, member RAS oncog 97.1 0.00064 2.2E-08 62.0 6.4 92 137-252 79-174 (179)
282 2fg5_A RAB-22B, RAS-related pr 97.1 0.00035 1.2E-08 65.7 4.7 94 138-255 88-185 (192)
283 3j2k_7 ERF3, eukaryotic polype 97.1 0.0024 8.1E-08 69.0 11.9 57 132-190 105-169 (439)
284 2fv8_A H6, RHO-related GTP-bin 97.1 0.00031 1E-08 67.0 4.3 104 141-254 92-198 (207)
285 1ky3_A GTP-binding protein YPT 97.1 0.00039 1.3E-08 63.7 4.9 57 135-191 71-133 (182)
286 1m2o_B GTP-binding protein SAR 97.1 0.0004 1.4E-08 65.4 5.0 100 141-252 86-188 (190)
287 2gf9_A RAS-related protein RAB 97.1 0.00049 1.7E-08 64.3 5.5 88 140-254 89-183 (189)
288 1z06_A RAS-related protein RAB 97.1 0.00067 2.3E-08 63.3 6.4 55 137-191 85-142 (189)
289 4djt_A GTP-binding nuclear pro 97.1 0.00072 2.5E-08 64.6 6.7 91 141-254 80-173 (218)
290 3p26_A Elongation factor 1 alp 97.1 0.00063 2.1E-08 74.4 7.0 57 133-190 122-185 (483)
291 1z2a_A RAS-related protein RAB 97.1 0.00042 1.4E-08 62.6 4.7 53 139-191 71-124 (168)
292 2atx_A Small GTP binding prote 97.1 0.00027 9.4E-09 66.2 3.5 52 141-192 85-138 (194)
293 1zun_B Sulfate adenylate trans 97.1 0.0011 3.7E-08 71.5 8.5 55 135-190 117-171 (434)
294 1zbd_A Rabphilin-3A; G protein 97.0 0.00045 1.5E-08 65.2 4.8 57 135-191 70-128 (203)
295 2yc2_C IFT27, small RAB-relate 97.0 0.00034 1.2E-08 65.9 3.8 56 135-190 86-146 (208)
296 3con_A GTPase NRAS; structural 97.0 0.00034 1.2E-08 65.2 3.8 94 135-255 82-182 (190)
297 2a5j_A RAS-related protein RAB 97.0 0.00059 2E-08 63.9 5.5 51 140-190 88-140 (191)
298 3c5h_A Glucocorticoid receptor 97.0 0.0013 4.3E-08 65.6 8.0 86 145-253 162-252 (255)
299 3tw8_B RAS-related protein RAB 97.0 0.00037 1.3E-08 63.8 3.8 51 141-191 77-128 (181)
300 4fn5_A EF-G 1, elongation fact 97.0 0.0007 2.4E-08 77.6 6.8 118 263-383 14-166 (709)
301 2bme_A RAB4A, RAS-related prot 97.0 0.00054 1.9E-08 63.3 4.9 57 135-191 72-130 (186)
302 2fn4_A P23, RAS-related protei 97.0 0.00088 3E-08 61.3 6.1 91 141-254 76-170 (181)
303 2iwr_A Centaurin gamma 1; ANK 97.0 0.0011 3.7E-08 60.9 6.8 45 142-188 69-120 (178)
304 3o47_A ADP-ribosylation factor 97.0 0.00086 2.9E-08 69.6 6.7 98 135-254 222-325 (329)
305 2oil_A CATX-8, RAS-related pro 97.0 0.0006 2E-08 63.8 5.0 53 139-191 91-145 (193)
306 3th5_A RAS-related C3 botulinu 96.0 0.00011 3.9E-09 69.7 0.0 56 138-193 94-151 (204)
307 3q3j_B RHO-related GTP-binding 97.0 0.00028 9.7E-09 68.0 2.8 51 140-190 93-145 (214)
308 3q72_A GTP-binding protein RAD 97.0 0.00093 3.2E-08 60.4 6.1 93 139-254 66-162 (166)
309 2e87_A Hypothetical protein PH 97.0 0.0024 8.3E-08 66.8 10.1 88 142-254 243-334 (357)
310 2c78_A Elongation factor TU-A; 97.0 0.0013 4.5E-08 70.1 8.1 54 135-190 88-142 (405)
311 2a9k_A RAS-related protein RAL 97.0 0.00063 2.2E-08 62.6 5.0 93 138-254 82-179 (187)
312 3clv_A RAB5 protein, putative; 97.0 0.00096 3.3E-08 61.9 6.2 92 138-254 109-202 (208)
313 3kkq_A RAS-related protein M-R 97.0 0.0011 3.6E-08 61.3 6.4 88 139-253 83-179 (183)
314 2hxs_A RAB-26, RAS-related pro 96.9 0.00059 2E-08 62.5 4.4 89 140-255 74-172 (178)
315 1u8z_A RAS-related protein RAL 96.9 0.0015 5.1E-08 58.6 6.9 55 137-191 67-124 (168)
316 3q85_A GTP-binding protein REM 96.9 0.0014 4.6E-08 59.5 6.5 89 142-253 72-164 (169)
317 2fu5_C RAS-related protein RAB 96.9 0.00074 2.5E-08 62.4 4.7 87 139-254 74-169 (183)
318 3gee_A MNME, tRNA modification 96.9 0.002 6.7E-08 70.5 8.8 88 139-254 306-396 (476)
319 2bcg_Y Protein YP2, GTP-bindin 96.9 0.0009 3.1E-08 63.3 5.4 52 140-191 75-128 (206)
320 3tr5_A RF-3, peptide chain rel 96.9 0.0013 4.4E-08 72.9 7.1 66 135-202 95-163 (528)
321 3ihw_A Centg3; RAS, centaurin, 96.8 0.00086 2.9E-08 62.9 4.7 48 142-189 82-132 (184)
322 2v3c_C SRP54, signal recogniti 96.8 0.00037 1.3E-08 75.3 2.4 23 262-284 99-121 (432)
323 3izy_P Translation initiation 96.8 0.00035 1.2E-08 77.5 2.2 116 140-279 70-211 (537)
324 1kao_A RAP2A; GTP-binding prot 96.8 0.0007 2.4E-08 60.8 3.8 54 138-191 67-123 (167)
325 2o52_A RAS-related protein RAB 96.8 0.0015 5E-08 61.9 5.9 54 138-191 90-145 (200)
326 3i8s_A Ferrous iron transport 96.8 0.00019 6.4E-09 72.6 -0.5 82 143-255 83-168 (274)
327 3iby_A Ferrous iron transport 96.8 0.00021 7.2E-09 71.7 -0.1 81 144-253 82-164 (256)
328 1m7b_A RND3/RHOE small GTP-bin 96.7 0.0013 4.3E-08 61.2 5.1 50 141-190 74-125 (184)
329 2atv_A RERG, RAS-like estrogen 96.7 0.0014 4.8E-08 61.5 5.4 52 139-190 92-146 (196)
330 2ywe_A GTP-binding protein LEP 96.7 0.0029 1E-07 71.1 8.8 99 135-256 86-184 (600)
331 3gj0_A GTP-binding nuclear pro 96.7 0.00076 2.6E-08 64.8 3.5 52 141-192 83-135 (221)
332 2qtf_A Protein HFLX, GTP-bindi 96.7 0.0036 1.2E-07 66.1 8.8 97 137-255 249-353 (364)
333 1z08_A RAS-related protein RAB 96.7 0.00092 3.2E-08 60.6 3.5 50 140-191 73-126 (170)
334 2elf_A Protein translation elo 96.7 0.005 1.7E-07 65.1 9.6 95 135-255 73-179 (370)
335 1pui_A ENGB, probable GTP-bind 96.7 0.012 4.1E-07 55.5 11.3 89 144-256 107-199 (210)
336 3geh_A MNME, tRNA modification 96.6 0.00075 2.5E-08 73.6 3.2 87 139-255 297-383 (462)
337 1gwn_A RHO-related GTP-binding 96.6 0.00057 2E-08 65.5 2.0 50 141-190 95-146 (205)
338 2ew1_A RAS-related protein RAB 96.6 0.0011 3.9E-08 63.2 4.0 56 135-190 88-145 (201)
339 2bov_A RAla, RAS-related prote 96.6 0.0043 1.5E-07 58.1 8.0 54 138-191 78-134 (206)
340 3t5d_A Septin-7; GTP-binding p 96.6 0.0014 4.7E-08 65.9 4.7 54 146-202 116-170 (274)
341 3zvr_A Dynamin-1; hydrolase, D 96.6 0.0016 5.4E-08 75.1 5.7 57 135-193 176-234 (772)
342 2nzj_A GTP-binding protein REM 96.6 0.0017 5.7E-08 59.1 4.8 51 141-191 73-126 (175)
343 1d2e_A Elongation factor TU (E 96.6 0.0044 1.5E-07 65.8 8.7 56 133-190 77-133 (397)
344 3cpj_B GTP-binding protein YPT 96.6 0.0011 3.8E-08 63.9 3.6 89 140-255 80-175 (223)
345 2qpt_A EH domain-containing pr 96.6 0.0019 6.4E-08 71.9 5.8 66 135-202 178-244 (550)
346 2wkq_A NPH1-1, RAS-related C3 96.5 0.0008 2.7E-08 68.4 2.4 54 139-192 220-275 (332)
347 3lvq_E ARF-GAP with SH3 domain 96.5 0.0016 5.5E-08 71.0 5.0 95 139-255 383-483 (497)
348 3r7w_B Gtpase2, GTP-binding pr 96.5 0.0048 1.7E-07 64.3 8.3 105 264-370 1-121 (331)
349 3a1s_A Iron(II) transport prot 96.5 0.001 3.4E-08 66.7 3.0 83 144-255 82-166 (258)
350 1g7s_A Translation initiation 96.5 0.0062 2.1E-07 68.4 9.6 47 142-190 90-136 (594)
351 1nrj_B SR-beta, signal recogni 96.5 0.0038 1.3E-07 59.5 6.7 62 141-202 78-146 (218)
352 2xtp_A GTPase IMAP family memb 96.5 0.0016 5.4E-08 64.5 4.0 56 135-191 95-154 (260)
353 2ged_A SR-beta, signal recogni 96.5 0.0022 7.4E-08 59.8 4.7 67 138-204 111-184 (193)
354 3ney_A 55 kDa erythrocyte memb 96.4 0.00041 1.4E-08 67.2 -0.7 56 261-316 18-75 (197)
355 3qq5_A Small GTP-binding prote 96.4 0.0015 5.1E-08 70.4 3.6 91 137-255 105-195 (423)
356 3cbq_A GTP-binding protein REM 96.4 0.006 2.1E-07 57.6 7.4 50 142-191 93-145 (195)
357 3p32_A Probable GTPase RV1496/ 96.4 0.0041 1.4E-07 65.1 6.7 96 141-255 188-283 (355)
358 2aka_B Dynamin-1; fusion prote 96.4 0.002 6.9E-08 64.8 4.0 57 134-192 150-208 (299)
359 3k53_A Ferrous iron transport 96.3 0.0008 2.8E-08 67.5 1.0 84 143-254 79-164 (271)
360 2wji_A Ferrous iron transport 96.3 0.001 3.4E-08 61.0 1.5 79 144-253 80-162 (165)
361 3izq_1 HBS1P, elongation facto 96.3 0.0024 8.3E-08 71.9 4.9 56 134-190 257-319 (611)
362 3c5c_A RAS-like protein 12; GD 96.3 0.0055 1.9E-07 57.2 6.5 51 140-190 86-141 (187)
363 3mca_A HBS1, elongation factor 96.3 0.0025 8.7E-08 71.5 4.9 48 141-190 274-329 (592)
364 1yrb_A ATP(GTP)binding protein 96.3 0.0067 2.3E-07 59.7 7.4 56 136-194 129-189 (262)
365 1dar_A EF-G, elongation factor 96.3 0.012 4.1E-07 67.2 10.3 67 135-204 90-156 (691)
366 3oes_A GTPase rhebl1; small GT 96.3 0.0016 5.6E-08 61.5 2.6 49 141-191 91-144 (201)
367 3r7w_A Gtpase1, GTP-binding pr 96.2 0.011 3.6E-07 60.6 8.7 54 138-191 73-130 (307)
368 4ido_A Atlastin-1; GTPase, GTP 96.2 0.004 1.4E-07 67.6 5.5 62 261-322 66-155 (457)
369 1r5b_A Eukaryotic peptide chai 96.2 0.011 3.7E-07 64.4 8.9 56 133-190 132-195 (467)
370 3avx_A Elongation factor TS, e 96.2 0.015 5.2E-07 69.6 10.6 57 132-190 369-426 (1289)
371 2zej_A Dardarin, leucine-rich 96.1 0.0085 2.9E-07 55.7 6.6 54 140-194 74-130 (184)
372 2dy1_A Elongation factor G; tr 96.1 0.0079 2.7E-07 68.4 7.6 66 135-202 87-154 (665)
373 1jny_A EF-1-alpha, elongation 96.1 0.01 3.6E-07 63.8 8.1 55 135-190 97-158 (435)
374 1udx_A The GTP-binding protein 96.0 0.0091 3.1E-07 64.2 7.1 93 140-256 230-325 (416)
375 2cxx_A Probable GTP-binding pr 96.0 0.021 7E-07 52.6 8.6 88 143-255 80-183 (190)
376 3b1v_A Ferrous iron uptake tra 95.9 0.0021 7.2E-08 65.0 1.7 80 144-254 79-162 (272)
377 2wjg_A FEOB, ferrous iron tran 95.9 0.003 1E-07 58.4 2.4 82 144-256 84-169 (188)
378 3l0i_B RAS-related protein RAB 95.8 0.0006 2E-08 64.4 -3.0 49 141-191 101-153 (199)
379 2j69_A Bacterial dynamin-like 95.7 0.0098 3.4E-07 68.0 6.2 54 137-192 192-246 (695)
380 3szr_A Interferon-induced GTP- 95.7 0.014 4.9E-07 65.6 7.2 23 264-286 47-69 (608)
381 2wsm_A Hydrogenase expression/ 95.7 0.0085 2.9E-07 57.2 4.7 81 146-254 130-212 (221)
382 2p67_A LAO/AO transport system 95.6 0.016 5.5E-07 60.2 7.0 91 142-254 166-259 (341)
383 4dkx_A RAS-related protein RAB 95.6 0.028 9.6E-07 54.6 8.3 86 140-252 80-172 (216)
384 3lxw_A GTPase IMAP family memb 95.6 0.0039 1.3E-07 61.8 2.0 56 135-191 91-154 (247)
385 3dpu_A RAB family protein; roc 95.5 0.0077 2.6E-07 66.4 4.4 48 142-191 118-165 (535)
386 1f60_A Elongation factor EEF1A 95.5 0.0077 2.6E-07 65.4 4.3 55 134-190 97-159 (458)
387 1wxq_A GTP-binding protein; st 95.5 0.013 4.4E-07 62.5 5.9 38 176-213 214-252 (397)
388 1kgd_A CASK, peripheral plasma 95.5 0.0052 1.8E-07 57.6 2.5 40 263-302 6-46 (180)
389 2www_A Methylmalonic aciduria 95.5 0.018 6.3E-07 60.1 6.7 91 141-254 183-277 (349)
390 3dm5_A SRP54, signal recogniti 95.3 0.0074 2.5E-07 65.4 3.2 31 261-291 99-135 (443)
391 2x2e_A Dynamin-1; nitration, h 95.1 0.012 4E-07 61.4 3.9 57 134-192 155-213 (353)
392 2xex_A Elongation factor G; GT 95.1 0.018 6E-07 65.9 5.6 65 135-201 88-155 (693)
393 2h5e_A Peptide chain release f 94.8 0.019 6.5E-07 63.5 4.8 56 135-192 95-150 (529)
394 3lxx_A GTPase IMAP family memb 94.7 0.017 5.7E-07 56.3 3.6 64 133-197 100-166 (239)
395 1j8m_F SRP54, signal recogniti 94.7 0.0097 3.3E-07 61.0 1.9 22 262-283 98-119 (297)
396 1h65_A Chloroplast outer envel 94.7 0.043 1.5E-06 54.7 6.6 60 133-192 105-170 (270)
397 2qor_A Guanylate kinase; phosp 94.6 0.0057 1.9E-07 58.4 -0.0 41 261-301 11-52 (204)
398 3c8u_A Fructokinase; YP_612366 94.6 0.024 8.3E-07 54.2 4.2 27 260-286 20-46 (208)
399 2g3y_A GTP-binding protein GEM 94.5 0.066 2.3E-06 51.7 7.3 48 143-190 109-159 (211)
400 2rdo_7 EF-G, elongation factor 94.3 0.06 2E-06 61.6 7.5 55 135-191 95-149 (704)
401 3ec2_A DNA replication protein 94.3 0.024 8.2E-07 52.6 3.5 43 243-285 19-61 (180)
402 1ye8_A Protein THEP1, hypothet 94.3 0.015 5.2E-07 54.9 2.0 24 263-286 1-24 (178)
403 3kl4_A SRP54, signal recogniti 94.3 0.018 6.2E-07 62.2 2.8 23 261-283 96-118 (433)
404 2cjw_A GTP-binding protein GEM 94.2 0.057 1.9E-06 50.7 5.8 48 143-190 78-128 (192)
405 1zp6_A Hypothetical protein AT 94.1 0.021 7.2E-07 53.2 2.6 25 261-285 8-32 (191)
406 1ko7_A HPR kinase/phosphatase; 94.0 0.095 3.2E-06 54.2 7.4 25 262-286 144-168 (314)
407 3t34_A Dynamin-related protein 93.8 0.079 2.7E-06 55.1 6.6 61 131-192 158-219 (360)
408 3tau_A Guanylate kinase, GMP k 93.8 0.026 8.7E-07 54.1 2.6 38 262-299 8-46 (208)
409 3vqt_A RF-3, peptide chain rel 93.7 0.12 4.1E-06 57.3 8.1 55 135-191 113-167 (548)
410 1rz3_A Hypothetical protein rb 93.5 0.05 1.7E-06 51.7 4.0 26 260-285 20-45 (201)
411 1lvg_A Guanylate kinase, GMP k 93.4 0.023 8E-07 54.1 1.6 23 263-285 5-27 (198)
412 2xxa_A Signal recognition part 93.4 0.024 8E-07 61.2 1.7 32 261-292 99-137 (433)
413 1ex7_A Guanylate kinase; subst 93.3 0.016 5.6E-07 55.3 0.3 39 265-303 4-43 (186)
414 2hf9_A Probable hydrogenase ni 93.2 0.085 2.9E-06 50.3 5.2 56 176-253 164-221 (226)
415 2j41_A Guanylate kinase; GMP, 93.2 0.034 1.2E-06 52.3 2.3 26 261-286 5-30 (207)
416 3tr0_A Guanylate kinase, GMP k 93.1 0.036 1.2E-06 52.1 2.3 24 262-285 7-30 (205)
417 2f9l_A RAB11B, member RAS onco 92.9 0.13 4.6E-06 48.0 6.0 50 141-190 73-124 (199)
418 3def_A T7I23.11 protein; chlor 92.9 0.13 4.4E-06 51.0 6.2 70 130-199 99-176 (262)
419 1s96_A Guanylate kinase, GMP k 92.8 0.038 1.3E-06 53.9 2.0 26 261-286 15-40 (219)
420 1zo1_I IF2, translation initia 92.8 0.11 3.9E-06 57.0 6.0 49 140-190 69-117 (501)
421 2qag_A Septin-2, protein NEDD5 92.7 0.14 4.8E-06 53.6 6.4 53 147-202 147-200 (361)
422 1n0u_A EF-2, elongation factor 92.7 0.056 1.9E-06 63.1 3.6 53 135-189 111-163 (842)
423 3tqc_A Pantothenate kinase; bi 92.6 0.072 2.5E-06 55.2 4.0 27 259-285 89-115 (321)
424 1znw_A Guanylate kinase, GMP k 92.6 0.045 1.5E-06 52.2 2.2 27 260-286 18-44 (207)
425 3asz_A Uridine kinase; cytidin 92.5 0.048 1.6E-06 51.8 2.3 25 261-285 5-29 (211)
426 3lw7_A Adenylate kinase relate 92.3 0.052 1.8E-06 49.0 2.2 20 263-282 2-21 (179)
427 3lnc_A Guanylate kinase, GMP k 92.3 0.048 1.6E-06 52.8 2.1 26 261-286 26-52 (231)
428 1kag_A SKI, shikimate kinase I 92.3 0.045 1.5E-06 50.1 1.8 23 263-285 5-27 (173)
429 1z6g_A Guanylate kinase; struc 92.3 0.045 1.5E-06 53.0 1.8 26 261-286 22-47 (218)
430 2rhm_A Putative kinase; P-loop 92.1 0.064 2.2E-06 49.7 2.6 24 261-284 4-27 (193)
431 2eyu_A Twitching motility prot 92.1 0.081 2.8E-06 53.0 3.5 27 259-285 22-48 (261)
432 3a00_A Guanylate kinase, GMP k 92.0 0.05 1.7E-06 51.0 1.8 23 264-286 3-25 (186)
433 2bdt_A BH3686; alpha-beta prot 92.0 0.051 1.8E-06 50.7 1.8 21 264-284 4-24 (189)
434 4a74_A DNA repair and recombin 92.0 0.06 2.1E-06 51.3 2.3 40 241-285 9-48 (231)
435 4eun_A Thermoresistant glucoki 92.0 0.058 2E-06 51.1 2.2 24 262-285 29-52 (200)
436 2qm8_A GTPase/ATPase; G protei 92.0 0.27 9.2E-06 51.0 7.4 95 141-254 164-259 (337)
437 1sq5_A Pantothenate kinase; P- 92.0 0.094 3.2E-06 53.6 3.8 26 260-285 78-103 (308)
438 2v9p_A Replication protein E1; 91.9 0.06 2E-06 55.4 2.3 28 259-286 123-150 (305)
439 1odf_A YGR205W, hypothetical 3 91.9 0.11 3.9E-06 52.8 4.3 42 244-286 14-55 (290)
440 1knq_A Gluconate kinase; ALFA/ 91.8 0.07 2.4E-06 49.0 2.4 24 262-285 8-31 (175)
441 1np6_A Molybdopterin-guanine d 91.8 0.056 1.9E-06 50.9 1.8 23 263-285 7-29 (174)
442 2bbw_A Adenylate kinase 4, AK4 91.8 0.069 2.4E-06 52.3 2.5 22 262-283 27-48 (246)
443 2if2_A Dephospho-COA kinase; a 91.7 0.06 2.1E-06 50.8 1.9 22 263-284 2-23 (204)
444 1ly1_A Polynucleotide kinase; 91.7 0.074 2.5E-06 48.6 2.5 22 263-284 3-24 (181)
445 4gp7_A Metallophosphoesterase; 91.6 0.079 2.7E-06 49.1 2.6 24 261-284 8-31 (171)
446 4a9a_A Ribosome-interacting GT 91.5 0.2 6.9E-06 53.0 5.9 55 133-188 137-194 (376)
447 2qt1_A Nicotinamide riboside k 91.5 0.084 2.9E-06 50.0 2.7 26 260-285 19-44 (207)
448 1cip_A Protein (guanine nucleo 91.5 0.13 4.6E-06 53.8 4.5 49 141-189 212-273 (353)
449 1cke_A CK, MSSA, protein (cyti 91.5 0.07 2.4E-06 51.0 2.1 23 263-285 6-28 (227)
450 2jaq_A Deoxyguanosine kinase; 91.4 0.069 2.4E-06 49.9 2.0 22 264-285 2-23 (205)
451 2pcj_A ABC transporter, lipopr 91.4 0.076 2.6E-06 51.8 2.4 26 261-286 29-54 (224)
452 3kb2_A SPBC2 prophage-derived 91.3 0.079 2.7E-06 48.0 2.2 22 264-285 3-24 (173)
453 3tif_A Uncharacterized ABC tra 91.3 0.087 3E-06 51.8 2.6 26 261-286 30-55 (235)
454 2cbz_A Multidrug resistance-as 91.2 0.088 3E-06 51.8 2.6 27 260-286 29-55 (237)
455 3cm0_A Adenylate kinase; ATP-b 91.2 0.083 2.8E-06 48.8 2.3 23 262-284 4-26 (186)
456 1jjv_A Dephospho-COA kinase; P 91.2 0.086 2.9E-06 49.8 2.4 22 263-284 3-24 (206)
457 3b85_A Phosphate starvation-in 91.2 0.084 2.9E-06 51.1 2.4 23 263-285 23-45 (208)
458 2onk_A Molybdate/tungstate ABC 91.1 0.082 2.8E-06 52.3 2.3 24 263-286 25-48 (240)
459 1mv5_A LMRA, multidrug resista 91.0 0.099 3.4E-06 51.6 2.7 27 260-286 26-52 (243)
460 3uie_A Adenylyl-sulfate kinase 91.0 0.094 3.2E-06 49.6 2.5 25 261-285 24-48 (200)
461 3aez_A Pantothenate kinase; tr 90.9 0.09 3.1E-06 54.1 2.5 28 259-286 87-114 (312)
462 2yvu_A Probable adenylyl-sulfa 90.9 0.1 3.4E-06 48.6 2.6 25 261-285 12-36 (186)
463 1g6h_A High-affinity branched- 90.8 0.096 3.3E-06 52.2 2.5 26 261-286 32-57 (257)
464 2f1r_A Molybdopterin-guanine d 90.8 0.046 1.6E-06 51.3 0.1 23 264-286 4-26 (171)
465 1b0u_A Histidine permease; ABC 90.8 0.1 3.4E-06 52.3 2.6 27 260-286 30-56 (262)
466 1kht_A Adenylate kinase; phosp 90.8 0.097 3.3E-06 48.3 2.3 23 262-284 3-25 (192)
467 1sgw_A Putative ABC transporte 90.7 0.09 3.1E-06 51.1 2.1 26 261-286 34-59 (214)
468 2v54_A DTMP kinase, thymidylat 90.7 0.1 3.5E-06 48.9 2.4 25 261-285 3-27 (204)
469 2i3b_A HCR-ntpase, human cance 90.7 0.077 2.6E-06 50.6 1.6 23 264-286 3-25 (189)
470 1nn5_A Similar to deoxythymidy 90.7 0.1 3.5E-06 49.2 2.4 25 261-285 8-32 (215)
471 2ff7_A Alpha-hemolysin translo 90.7 0.1 3.5E-06 51.7 2.5 26 261-286 34-59 (247)
472 2wwf_A Thymidilate kinase, put 90.6 0.11 3.6E-06 49.1 2.4 25 261-285 9-33 (212)
473 1nks_A Adenylate kinase; therm 90.6 0.1 3.5E-06 48.1 2.3 23 263-285 2-24 (194)
474 2plr_A DTMP kinase, probable t 90.5 0.11 3.9E-06 48.7 2.6 24 262-285 4-27 (213)
475 2ghi_A Transport protein; mult 90.5 0.11 3.8E-06 51.8 2.6 27 260-286 44-70 (260)
476 1qhx_A CPT, protein (chloramph 90.4 0.11 3.8E-06 47.6 2.3 23 263-285 4-26 (178)
477 2olj_A Amino acid ABC transpor 90.4 0.12 4E-06 52.0 2.6 27 260-286 48-74 (263)
478 2pze_A Cystic fibrosis transme 90.4 0.11 3.9E-06 50.7 2.5 26 261-286 33-58 (229)
479 3t61_A Gluconokinase; PSI-biol 90.3 0.094 3.2E-06 49.5 1.8 24 262-285 18-41 (202)
480 1aky_A Adenylate kinase; ATP:A 90.3 0.11 3.9E-06 49.6 2.4 25 261-285 3-27 (220)
481 3vaa_A Shikimate kinase, SK; s 90.3 0.11 3.7E-06 49.1 2.2 24 262-285 25-48 (199)
482 4g1u_C Hemin import ATP-bindin 90.3 0.11 3.9E-06 52.1 2.5 27 260-286 35-61 (266)
483 1ji0_A ABC transporter; ATP bi 90.2 0.12 4E-06 51.0 2.5 26 261-286 31-56 (240)
484 2ixe_A Antigen peptide transpo 90.2 0.12 4.2E-06 51.9 2.6 27 260-286 43-69 (271)
485 3gfo_A Cobalt import ATP-bindi 90.2 0.12 3.9E-06 52.4 2.4 26 261-286 33-58 (275)
486 1y63_A LMAJ004144AAA protein; 90.2 0.13 4.4E-06 48.0 2.6 25 261-285 9-33 (184)
487 2d2e_A SUFC protein; ABC-ATPas 90.2 0.12 4E-06 51.3 2.4 25 261-285 28-52 (250)
488 2qi9_C Vitamin B12 import ATP- 90.1 0.12 4.1E-06 51.4 2.5 26 261-286 25-50 (249)
489 2pez_A Bifunctional 3'-phospho 90.1 0.12 4.2E-06 47.7 2.4 25 261-285 4-28 (179)
490 1tev_A UMP-CMP kinase; ploop, 90.1 0.13 4.3E-06 47.6 2.5 23 262-284 3-25 (196)
491 2zu0_C Probable ATP-dependent 90.0 0.13 4.3E-06 51.7 2.6 26 260-285 44-69 (267)
492 1vpl_A ABC transporter, ATP-bi 90.0 0.13 4.4E-06 51.4 2.6 26 261-286 40-65 (256)
493 2jeo_A Uridine-cytidine kinase 90.0 0.13 4.3E-06 50.5 2.5 26 260-285 23-48 (245)
494 1oix_A RAS-related protein RAB 90.0 0.34 1.1E-05 45.1 5.3 50 141-190 97-148 (191)
495 4fn5_A EF-G 1, elongation fact 90.0 0.27 9.2E-06 56.2 5.5 54 135-190 98-151 (709)
496 2pt5_A Shikimate kinase, SK; a 90.0 0.12 4.2E-06 46.8 2.2 23 263-285 1-23 (168)
497 2yz2_A Putative ABC transporte 89.9 0.13 4.5E-06 51.5 2.6 26 261-286 32-57 (266)
498 2c95_A Adenylate kinase 1; tra 89.9 0.13 4.6E-06 47.7 2.4 24 261-284 8-31 (196)
499 3fb4_A Adenylate kinase; psych 89.8 0.12 4.2E-06 49.0 2.2 23 263-285 1-23 (216)
500 2cdn_A Adenylate kinase; phosp 89.8 0.14 4.7E-06 48.3 2.5 25 261-285 19-43 (201)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=2e-41 Score=348.88 Aligned_cols=253 Identities=23% Similarity=0.412 Sum_probs=196.2
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHh-cCCeEEEEc
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLRE-ELPAVAFKC 212 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~-~~ptv~f~~ 212 (596)
.++++++++++.+|+||+|+|||+|++++++.+++++ .++|.|+|+||+||++.+.++.|+.|+++ .++++.+.+
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA 87 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINS 87 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCT
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEEC
Confidence 3679999999999999999999999999999999887 47999999999999999889999999975 356655543
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhcc-------c-cccceEEEeecCCCCCcchHHHhhhc
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH-------E-IKKSITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~-------~-~k~~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
..+.|.+.|++.+.++.... + ....++|+|||+||||||||||+|++
T Consensus 88 -------------------------~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 88 -------------------------VNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp -------------------------TTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred -------------------------CCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhc
Confidence 23445566666555543311 1 24578999999999999999999999
Q ss_pred cccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChH--HHHHhhccccccccCCCc---hhHHHHHhhCCcchh
Q 007611 285 CHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEND--ASIALRNCKRIEKLDDPV---GPVKEILNRCPANLL 359 (596)
Q Consensus 285 ~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~--~~~~L~~~~~i~~l~D~~---~~v~~iL~~~~~~~L 359 (596)
.+.+.|++.||||++.+.+.++.++.|+||||+..+...... ...++.++.....+ ++. ..+.++|.++....|
T Consensus 143 ~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~~~~~~l 221 (282)
T 1puj_A 143 KNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSII-NLQDVAVFGLRFLEEHYPERL 221 (282)
T ss_dssp SCCC------------CCEEETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSS-CHHHHHHHHHHHHHHHCHHHH
T ss_pred CceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhC-CHHHHHHHHHHHHHHhChHHH
Confidence 999999999999999999888999999999999998655443 34566666543322 332 244566777777788
Q ss_pred hhhhCCCCC-CCHHHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHcCCCCcccCCC
Q 007611 360 ISLYKLPSF-DSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 416 (596)
Q Consensus 360 ~~l~ki~~~-~~~~e~L~~la~~~g~l~kggi~di~aaa~~~L~d~~~Gki~~~~~pp 416 (596)
+..|+++.+ .+..+||..+|+++|++.+||.||+.+||+.+|+||+.|++++|+++.
T Consensus 222 ~~~y~~~~~~~~~~~~l~~~a~~~g~~~kgg~~d~~~aa~~~l~d~~~Gklg~~~l~~ 279 (282)
T 1puj_A 222 KERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQ 279 (282)
T ss_dssp HHHTTCSSCCSSHHHHHHHHHHHHTCBCSTTCBCHHHHHHHHHHHHHTTTTCSCCSCC
T ss_pred HHHcCCCCCCCCHHHHHHHHHHHhCCcccCCcccHHHHHHHHHHHHHcCCCCceECCC
Confidence 889999866 578899999999999999999999999999999999999999999875
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=4.3e-38 Score=320.77 Aligned_cols=236 Identities=25% Similarity=0.412 Sum_probs=182.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEcc
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKCS 213 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~-~ptv~f~~~ 213 (596)
.+++++.+++++|+||+|+|||+|++++++.++ ++ ++|.|+|+||+||++.+.++.|+.||++. +|+ .+.
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iS-- 81 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITT-- 81 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EEC--
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEE--
Confidence 457999999999999999999999999998877 54 69999999999999998899999999764 564 432
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCC
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGAT 293 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~ 293 (596)
+..+.|.+.|++.|..++ ++|+|||.||||||||||+|.+...+.++++
T Consensus 82 -----------------------a~~~~gi~~L~~~l~~~~--------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 82 -----------------------HKGEPRKVLLKKLSFDRL--------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp -----------------------CTTSCHHHHHHHHCCCTT--------CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred -----------------------CCCCcCHHHHHHHHHHhh--------hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 234567788887776543 6899999999999999999999998899999
Q ss_pred CCceeeeEEEEeCCcEEEEecCCCccCCC-CChHHHHHhhccccccccCCCchhHHHHHhhCCcchhhhhhCCCCCCCHH
Q 007611 294 PGLTRSMQEVQLDKNVKLLDCPGVVMLKS-GENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVD 372 (596)
Q Consensus 294 PgtTr~~q~v~l~~~i~LiDTPGI~~~~~-~~~~~~~~L~~~~~i~~l~D~~~~v~~iL~~~~~~~L~~l~ki~~~~~~~ 372 (596)
||+|+..+.+.++..+.|+||||+..+.. .+.... . +.+....+....+.+.|.++....+...|+++. .+ .
T Consensus 131 ~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~--~---~~~~d~~~~~~~~~~~l~~~~~~~l~~~y~i~~-~d-~ 203 (262)
T 3cnl_A 131 PGITKGIQWFSLENGVKILDTPGILYKNIFSEDLAA--K---LLLVGSLPVERIEDQRIFERAFEIFARSIGIES-SF-S 203 (262)
T ss_dssp ----CCSCEEECTTSCEEESSCEECCCCCCSHHHHH--H---HHHTTSSCGGGCCCHHHHHHHHHHHHHHHTCCC-CH-H
T ss_pred CCCccceEEEEeCCCEEEEECCCcccCcCCCChhhc--c---cccCCHHHHHHHHHHHHHHhCHHHHHHHcCcCC-Cc-H
Confidence 99999999999888999999999998864 332221 1 111111222233344555555567888899973 44 7
Q ss_pred HHHHHHHHHhcccccCCcccHHHHHHHHHHHHHcCCCCcccCCCC
Q 007611 373 DFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPA 417 (596)
Q Consensus 373 e~L~~la~~~g~l~kggi~di~aaa~~~L~d~~~Gki~~~~~pp~ 417 (596)
+||..+|+++|++.+||.||+.+||+.+|++|+.|++++|++|+.
T Consensus 204 ~~l~~ia~~~g~~~kgg~~d~~~aa~~~l~d~~~g~l~~~~l~~~ 248 (262)
T 3cnl_A 204 EFFEDFARKRGLLKKGGVPDIERALMLFFTEVAQGKAGRVSFERP 248 (262)
T ss_dssp HHHHHHHHHTTCBCGGGCBCHHHHHHHHHHHHHTTTTCSCCSCCT
T ss_pred HHHHHHHHHhCCccCCCcccHHHHHHHHHHHHHcCCCCceECCCC
Confidence 999999999999999999999999999999999999999999863
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.89 E-value=4.6e-23 Score=219.63 Aligned_cols=158 Identities=27% Similarity=0.475 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH----HHHHHHHHHHHhcCCe
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR----ESVEKWLKYLREELPA 207 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~----e~l~~Wl~yLr~~~pt 207 (596)
..+|.+.+..+.+.+|+||+|+|+++|.++..+.+.+++ .++|+|+|+||+||+|. +.+..|+..+.+....
T Consensus 58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~ 133 (369)
T 3ec1_A 58 DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL 133 (369)
T ss_dssp -CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC
Confidence 445888888888999999999999999999988888775 37999999999999986 3577888754433221
Q ss_pred --EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcc
Q 007611 208 --VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 208 --v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.. ...+|+..+.|.+.|++.|.++.. ..+|++||.||||||||||+|++.
T Consensus 134 ~~~~----------------------v~~iSA~~g~gi~~L~~~I~~~~~------~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 134 CPVD----------------------VCLVSAAKGIGMAKVMEAINRYRE------GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp CCSE----------------------EEECBTTTTBTHHHHHHHHHHHHT------TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred Cccc----------------------EEEEECCCCCCHHHHHHHHHhhcc------cCcEEEEcCCCCchHHHHHHHHhh
Confidence 01 113456678899999999988653 357999999999999999999987
Q ss_pred -----ccccccCCCCceeeeEEEEeCCcEEEEecCCCccCC
Q 007611 286 -----HVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (596)
Q Consensus 286 -----kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~ 321 (596)
..+.+++.||||+..+.+.++.++.|+||||+..+.
T Consensus 186 ~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 186 ATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHH 226 (369)
T ss_dssp HHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCS
T ss_pred ccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHH
Confidence 567899999999999999998899999999998764
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.88 E-value=1e-22 Score=216.81 Aligned_cols=159 Identities=25% Similarity=0.460 Sum_probs=124.9
Q ss_pred chHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCC
Q 007611 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELP 206 (596)
Q Consensus 131 ~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e----~l~~Wl~yLr~~~p 206 (596)
...+|.+.+..+...+|+||+|+|+++|.++..+.+.+++ +++|+|+|+||+||++.+ .+..|+.++.+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 4566888888888889999999999999888777777764 479999999999999865 57789876654432
Q ss_pred e--EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhc
Q 007611 207 A--VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 207 t--v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
. ..+ ..+|+..+.|++.|++.|.++.. ..+|++||.||||||||||+|++
T Consensus 131 ~~~~~v----------------------~~iSA~~g~gi~~L~~~l~~~~~------~~~i~~vG~~nvGKStliN~L~~ 182 (368)
T 3h2y_A 131 LKPEDV----------------------FLISAAKGQGIAELADAIEYYRG------GKDVYVVGCTNVGKSTFINRMIK 182 (368)
T ss_dssp CCCSEE----------------------EECCTTTCTTHHHHHHHHHHHHT------TSCEEEEEBTTSSHHHHHHHHHH
T ss_pred CCcccE----------------------EEEeCCCCcCHHHHHhhhhhhcc------cceEEEecCCCCChhHHHHHHHh
Confidence 1 111 13456678899999999987653 36799999999999999999998
Q ss_pred cc------cccccCCCCceeeeEEEEeCCcEEEEecCCCccCC
Q 007611 285 CH------VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (596)
Q Consensus 285 ~k------v~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~ 321 (596)
.. .+.+++.||||++.+.+.++..+.|+||||+..+.
T Consensus 183 ~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 183 EFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHH 225 (368)
T ss_dssp HHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTT
T ss_pred hhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHH
Confidence 63 55689999999999999998889999999998764
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=2.3e-20 Score=202.81 Aligned_cols=212 Identities=16% Similarity=0.220 Sum_probs=139.2
Q ss_pred chHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEE
Q 007611 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVA 209 (596)
Q Consensus 131 ~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~-ptv~ 209 (596)
....|..+....++.||+||+|+|++++++.....+.+++... ++|+|||+||+|+........|..++.-.+ +.
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~--~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~-- 142 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLREFEREVKPELYSLGFGEP-- 142 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSC--
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccccHHHHHHHHHhcCCCCE--
Confidence 3456778888999999999999999999887777777777654 799999999999964312222233332112 11
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccc--------cccceEEEeecCCCCCcchHHHh
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE--------IKKSITVGVIGLPNVGKSSLINS 281 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~--------~k~~i~V~vVG~PNVGKSSLINs 281 (596)
..+|+..+.|++.|++.|....+... ....++|+|||.||||||||+|+
T Consensus 143 -----------------------~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~ 199 (439)
T 1mky_A 143 -----------------------IPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNA 199 (439)
T ss_dssp -----------------------EECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHH
T ss_pred -----------------------EEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHH
Confidence 13556678899999888866554211 12468999999999999999999
Q ss_pred hhccccccccCCCCceeeeEEE--Ee-CCcEEEEecCCCccCCC---------CChHHHHHhhccccccccCCC---ch-
Q 007611 282 LKRCHVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKS---------GENDASIALRNCKRIEKLDDP---VG- 345 (596)
Q Consensus 282 L~~~kv~~vs~~PgtTr~~q~v--~l-~~~i~LiDTPGI~~~~~---------~~~~~~~~L~~~~~i~~l~D~---~~- 345 (596)
|++...+.+++.||||++.... .+ +..+.++||||+..... ........+..++.+..+.|. ..
T Consensus 200 l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~ 279 (439)
T 1mky_A 200 ILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITR 279 (439)
T ss_dssp HHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCH
T ss_pred HhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCH
Confidence 9999888899999999987643 33 45788999999843211 112233455555554433332 11
Q ss_pred ---hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 346 ---PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 346 ---~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
.+..++...+.+.+++.||+|...
T Consensus 280 ~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 280 QDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred HHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 223445556677888889988654
No 6
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=1.6e-20 Score=203.92 Aligned_cols=211 Identities=18% Similarity=0.244 Sum_probs=134.2
Q ss_pred chHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEE
Q 007611 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAF 210 (596)
Q Consensus 131 ~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f 210 (596)
....|..+....++.+|+||+|+|++++++.....+.+++.. .++|+|||+||+|+.+... .+..++.-.+
T Consensus 68 ~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~~lg~----- 138 (436)
T 2hjg_A 68 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFYSLGF----- 138 (436)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSGGGSS-----
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHHHcCC-----
Confidence 345677788889999999999999999988666666666643 4799999999999986431 0111111001
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccc----cccceEEEeecCCCCCcchHHHhhhccc
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE----IKKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~----~k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
.....+|+..+.|.+.|++.+....+... ....++|+|||.||||||||+|+|++..
T Consensus 139 -------------------~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 139 -------------------GEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp -------------------CCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred -------------------CCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 01224667788999999999877665321 1246899999999999999999999998
Q ss_pred cccccCCCCceeeeEEEE--e-CCcEEEEecCCCccCCCC----Ch----HHHHHhhccccccccCCCch---h----HH
Q 007611 287 VANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSG----EN----DASIALRNCKRIEKLDDPVG---P----VK 348 (596)
Q Consensus 287 v~~vs~~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~----~~----~~~~~L~~~~~i~~l~D~~~---~----v~ 348 (596)
.+.+++.||||++..... . +..+.|+||||+...... +. .....++.++.+..+.|... . +.
T Consensus 200 ~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~ 279 (436)
T 2hjg_A 200 RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIA 279 (436)
T ss_dssp TEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHH
Confidence 878999999999865433 3 457999999999643221 11 12235566666554444322 1 11
Q ss_pred HHHhhCCcchhhhhhCCCCCC
Q 007611 349 EILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 349 ~iL~~~~~~~L~~l~ki~~~~ 369 (596)
..+...+.+.+++.||+|...
T Consensus 280 ~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 280 GYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHHHHTTCEEEEEEECGGGSC
T ss_pred HHHHHcCCcEEEEEECccCCC
Confidence 223334567788889998654
No 7
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=1.9e-19 Score=196.59 Aligned_cols=211 Identities=18% Similarity=0.242 Sum_probs=138.1
Q ss_pred chHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEE
Q 007611 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAF 210 (596)
Q Consensus 131 ~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f 210 (596)
....|..+....+..+|+||+|+|+++++......+.+++.. .++|+|||+||+|+.... ..+..++...+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~--- 160 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGE--- 160 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGGGSSSS---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhh--hhHHHHHHcCCCc---
Confidence 467788888899999999999999999988777778777754 479999999999997542 1222222221211
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhcc----ccccceEEEeecCCCCCcchHHHhhhccc
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH----EIKKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~----~~k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...+|+..+.|+..|+..+..+.... .....++|+|||.||||||||+|+|++..
T Consensus 161 ---------------------~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 161 ---------------------PYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp ---------------------EEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ---------------------eEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC
Confidence 11345667889999999988766432 12357899999999999999999999988
Q ss_pred cccccCCCCceeeeEE--EEe-CCcEEEEecCCCccCCC----CCh----HHHHHhhccccccccCCCch---h----HH
Q 007611 287 VANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKS----GEN----DASIALRNCKRIEKLDDPVG---P----VK 348 (596)
Q Consensus 287 v~~vs~~PgtTr~~q~--v~l-~~~i~LiDTPGI~~~~~----~~~----~~~~~L~~~~~i~~l~D~~~---~----v~ 348 (596)
.+.+++.||||++... +.. +..+.|+||||+..... .+. .....++.++.+..+.|... . +.
T Consensus 220 ~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~ 299 (456)
T 4dcu_A 220 RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIA 299 (456)
T ss_dssp TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHH
Confidence 7889999999998643 333 45799999999865421 111 12235566666655544332 1 22
Q ss_pred HHHhhCCcchhhhhhCCCCCC
Q 007611 349 EILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 349 ~iL~~~~~~~L~~l~ki~~~~ 369 (596)
.++...+.+.+++.||+|...
T Consensus 300 ~~~~~~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 300 GYAHEAGKAVVIVVNKWDAVD 320 (456)
T ss_dssp HHHHHTTCEEEEEEECGGGSC
T ss_pred HHHHHcCCCEEEEEEChhcCC
Confidence 233445667888899998653
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=3e-19 Score=185.66 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=101.5
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHHH----HHHHHHHHHhc-CCeEEEEcchh
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRES----VEKWLKYLREE-LPAVAFKCSTQ 215 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~----l~~Wl~yLr~~-~ptv~f~~~~~ 215 (596)
+++++|+||+|+|+|+|..+.+ .+++++..+ ..+++.||||||+||++.+. +..|.++|+.. ++++.+.+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa--- 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS--- 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH---
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEec---
Confidence 7999999999999999999887 788888643 35899999999999998754 78999999763 66655432
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCC-
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATP- 294 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P- 294 (596)
..+.|.+.|+.++. .-.++|+|.+|||||||||+|.+.....+|..+
T Consensus 159 ----------------------~~~~g~~~L~~~~~----------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 159 ----------------------KDQDSLADIIPHFQ----------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp ----------------------HHHTTCTTTGGGGT----------TSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ----------------------CCCCCHHHHHhhcC----------CCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 22334444443332 347999999999999999999987655566555
Q ss_pred ------CceeeeEEEEeCCcEEEEecCCCccC
Q 007611 295 ------GLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 295 ------gtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
+||+..+.+.+. ..+++||||+...
T Consensus 207 ~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 207 HLGRGKHTTRHVELIHTS-GGLVADTPGFSSL 237 (307)
T ss_dssp --------CCCCCEEEET-TEEEESSCSCSSC
T ss_pred ecCCCcccccHHHHhhcC-CEEEecCCCcccc
Confidence 577776666665 5689999999864
No 9
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.72 E-value=3.5e-18 Score=180.97 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=109.9
Q ss_pred ccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHHH---HHHHHHHHHhc
Q 007611 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRES---VEKWLKYLREE 204 (596)
Q Consensus 129 ~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~---l~~Wl~yLr~~ 204 (596)
...+..++.+++.+++++|+|++ +||++|..+.+ .|++++..+ ..+++.||||||+||++.+. +..|+.+|+..
T Consensus 114 ~l~R~~~~~~~~~i~anvD~v~i-v~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~ 191 (358)
T 2rcn_A 114 VLTRPDFYDGVKPIAANIDQIVI-VSAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI 191 (358)
T ss_dssp EEEEC-----CEEEEECCCEEEE-EEESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT
T ss_pred cccCcchhhHHHHHHhcCCEEEE-EEeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhC
Confidence 33445566677778999999995 58999988777 688887532 23789999999999999875 77899999765
Q ss_pred -CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhh
Q 007611 205 -LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLK 283 (596)
Q Consensus 205 -~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~ 283 (596)
|+++.+. +..+.|.+.|...+. .-.++|+|.+|||||||||+|.
T Consensus 192 G~~v~~~S-------------------------a~~~~gl~~L~~~~~----------G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 192 GYRVLMVS-------------------------SHTQDGLKPLEEALT----------GRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp TCCEEECB-------------------------TTTTBTHHHHHHHHT----------TSEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEe-------------------------cCCCcCHHHHHHhcC----------CCEEEEECCCCccHHHHHHHHh
Confidence 6654432 234567777766542 2468999999999999999999
Q ss_pred cccc-ccccCCC---C----ceeeeEEEEeCCcEEEEecCCCccC
Q 007611 284 RCHV-ANVGATP---G----LTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 284 ~~kv-~~vs~~P---g----tTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
+... ..+|... | +|+..+.+.+.....|+||||+...
T Consensus 237 g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 237 GLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp CCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred ccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 8765 5555443 3 5676777777777789999999653
No 10
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.64 E-value=1.6e-17 Score=175.57 Aligned_cols=213 Identities=20% Similarity=0.161 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHhhh-cCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHh-cCCeEE
Q 007611 132 DRAFYKELVKVIEV-SDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLRE-ELPAVA 209 (596)
Q Consensus 132 ~~~~~kel~kvie~-sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~-~~ptv~ 209 (596)
+.++.+.|..+-+. +|.+..|+|++.|++++++.+++++....+.++++++|||+||++......|..|++. .++.-.
T Consensus 43 ~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~ 122 (357)
T 2e87_A 43 RLREELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDP 122 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Confidence 34455555544443 5667788899999999999999988655457889999999999999999999999987 433222
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHH--------------hhhhcccc-ccceEEEeecCCCCC
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK--------------NYSRSHEI-KKSITVGVIGLPNVG 274 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk--------------~y~~~~~~-k~~i~V~vVG~PNVG 274 (596)
+.+... ...+...+..+++ .+...... ...++|+|||.||||
T Consensus 123 ~~~~~~-----------------------~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvG 179 (357)
T 2e87_A 123 NEIAEL-----------------------RRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVG 179 (357)
T ss_dssp HHHHHH-----------------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSS
T ss_pred HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCC
Confidence 211110 0111122222211 11111122 357899999999999
Q ss_pred cchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC--h---HHHHHh-hccccccccCCCch
Q 007611 275 KSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE--N---DASIAL-RNCKRIEKLDDPVG 345 (596)
Q Consensus 275 KSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~--~---~~~~~L-~~~~~i~~l~D~~~ 345 (596)
||||||+|++.. ..++..|++|+..+...+ +..+.++||||+....... . .....+ ..++.+..+.|...
T Consensus 180 KSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~ 258 (357)
T 2e87_A 180 KSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE 258 (357)
T ss_dssp HHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTC
T ss_pred HHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence 999999999987 468889999998877654 3458999999997653221 1 111112 23454555544221
Q ss_pred -------h----HHHHHhhC-CcchhhhhhCCCCC
Q 007611 346 -------P----VKEILNRC-PANLLISLYKLPSF 368 (596)
Q Consensus 346 -------~----v~~iL~~~-~~~~L~~l~ki~~~ 368 (596)
. +..+...+ ..+.+++.||+|..
T Consensus 259 ~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 259 HCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 1 11223333 45677778888764
No 11
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.63 E-value=1.1e-15 Score=158.41 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=103.6
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHH---HHHHHHHHHHhc-CCeEEEEcchhH
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE---SVEKWLKYLREE-LPAVAFKCSTQE 216 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e---~l~~Wl~yLr~~-~ptv~f~~~~~~ 216 (596)
.+.++|+||+|+|+++|..+.. .+++++... ..++|+|||+||+||++.. .+..|..+++.. ++++
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~-------- 146 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVL-------- 146 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEE--------
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEE--------
Confidence 6889999999999999964433 455655332 1479999999999999875 367888887654 3322
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCC-
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG- 295 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pg- 295 (596)
.+|+..+.|++.|+..+.. -.++|+|.+|||||||||+|. .....+|....
T Consensus 147 -----------------~~SA~~g~gi~~L~~~l~G----------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~ 198 (302)
T 2yv5_A 147 -----------------KVSAKTGEGIDELVDYLEG----------FICILAGPSGVGKSSILSRLT-GEELRTQEVSEK 198 (302)
T ss_dssp -----------------ECCTTTCTTHHHHHHHTTT----------CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---
T ss_pred -----------------EEECCCCCCHHHHHhhccC----------cEEEEECCCCCCHHHHHHHHH-HhhCcccccccc
Confidence 2344567788888877653 468999999999999999999 65555565553
Q ss_pred ------ceeeeEEEEeCCcEEEEecCCCcc
Q 007611 296 ------LTRSMQEVQLDKNVKLLDCPGVVM 319 (596)
Q Consensus 296 ------tTr~~q~v~l~~~i~LiDTPGI~~ 319 (596)
+|+..+.+.+...-+++||||+..
T Consensus 199 ~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 199 TERGRHTTTGVRLIPFGKGSFVGDTPGFSK 228 (302)
T ss_dssp ------CCCCEEEEEETTTEEEESSCCCSS
T ss_pred cCCCCCceeeEEEEEcCCCcEEEECcCcCc
Confidence 677666666645568999999863
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.58 E-value=2.9e-17 Score=170.39 Aligned_cols=197 Identities=19% Similarity=0.264 Sum_probs=122.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCC-------hHHHH
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGE-------NDASI 329 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~-------~~~~~ 329 (596)
.+++|+|+|.||||||||+|+|++.+++.+++.||||++...... +.+++|+||||+..+.... ..+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998765443 5589999999998764111 23445
Q ss_pred HhhccccccccCCCchh-------H-HHHHhhCCcchhhhhhCCCCCCCH---HHHHHHHHHHhcccccCCcccHHHHHH
Q 007611 330 ALRNCKRIEKLDDPVGP-------V-KEILNRCPANLLISLYKLPSFDSV---DDFLQKVATVRGKLKKGGIVDVEAAAR 398 (596)
Q Consensus 330 ~L~~~~~i~~l~D~~~~-------v-~~iL~~~~~~~L~~l~ki~~~~~~---~e~L~~la~~~g~l~kggi~di~aaa~ 398 (596)
.+..++.+..+.|+... + ...+.....+.++++||+|...+. ...+..++...+ ....++.+++...
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~--~~~~i~~vSA~~g 166 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP--ELTEIVPISALKG 166 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT--TCCCEEECBTTTT
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc--CCCeEEEEeCCCC
Confidence 67788887777665421 1 233444456788889999976332 334444444332 1223444444333
Q ss_pred HHHHHHHcCCCCcccCCCCCCCCCCchhhhhHhhhccCccchhcccccccccCCccccccCCccccCCCCccccc
Q 007611 399 IILHDWNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDE 473 (596)
Q Consensus 399 ~~L~d~~~Gki~~~~~pp~~~~~~~~~~~iv~~~~~~f~~~el~~~e~~~~~~l~~l~~~~~~e~~~~~p~~~d~ 473 (596)
..+.++...-..++ |.. +..++.+.+++...+|.+.++++ +. ++..++.|+||+..+.+++
T Consensus 167 ~gv~~L~~~l~~~l--~~~---~~~~~~~~~td~~~~~~~~e~ir-ek--------~~~~~~~eiP~~~~v~i~~ 227 (308)
T 3iev_A 167 ANLDELVKTILKYL--PEG---EPLFPEDMITDLPLRLLAAEIVR-EK--------AMMLTREEVPTSIAVKINE 227 (308)
T ss_dssp BSHHHHHHHHHHHS--CBC---CCSSCTTCCBCCCHHHHHHHHHH-HH--------HHHTCCTTHHHHCEEEEEE
T ss_pred CCHHHHHHHHHHhC--ccC---CCCCCcccccCCCHHHHHHHHHH-HH--------HHhhhhhhcCCeeEEEeEE
Confidence 22222221111111 110 01222334455566677778877 33 4555678899987776543
No 13
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.57 E-value=4.6e-15 Score=153.48 Aligned_cols=144 Identities=24% Similarity=0.328 Sum_probs=101.0
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHHH---HHHHHHHHHhcCCeEEEEcchhH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRES---VEKWLKYLREELPAVAFKCSTQE 216 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~---l~~Wl~yLr~~~ptv~f~~~~~~ 216 (596)
..+.++|+||+|+|+++|..+. ..+.+++... ..+.|+|||+||+||.+... +..|..++...++.+
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~-------- 150 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIV-------- 150 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEE--------
T ss_pred cccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEE--------
Confidence 3578899999999999997543 2345554321 14789999999999998754 567887765432222
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCC--
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATP-- 294 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P-- 294 (596)
..|+..+.|++.|+..+.. -.++|+|.+|+|||||||+|.+.....+|...
T Consensus 151 -----------------~~SAktg~gv~~lf~~l~g----------eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~ 203 (301)
T 1u0l_A 151 -----------------KTSAKTGMGIEELKEYLKG----------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEK 203 (301)
T ss_dssp -----------------ECCTTTCTTHHHHHHHHSS----------SEEEEECSTTSSHHHHHHHHSTTCCCC-------
T ss_pred -----------------EEECCCCcCHHHHHHHhcC----------CeEEEECCCCCcHHHHHHHhcccccccccceecc
Confidence 2344567788988887753 46899999999999999999987655555444
Q ss_pred -----CceeeeEEEEeCCcEEEEecCCCccC
Q 007611 295 -----GLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 295 -----gtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
++|+..+.+.+.....++||||+...
T Consensus 204 ~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 204 LQRGRHTTTTAQLLKFDFGGYVVDTPGFANL 234 (301)
T ss_dssp ------CCCSCCEEECTTSCEEESSCSSTTC
T ss_pred cCCCCCceeeeEEEEcCCCCEEEECcCCCcc
Confidence 36665555555445689999998655
No 14
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.55 E-value=3.5e-16 Score=162.06 Aligned_cols=193 Identities=21% Similarity=0.189 Sum_probs=119.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~-----~~~~~~~L~ 332 (596)
++++|+|||.||||||||+|+|++.+++.+++.|+||++.....+ +.++.|+||||+..+... ...+...++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999998665433 558999999999876431 123445678
Q ss_pred ccccccccCCCc---hh----HHHHHhhC--CcchhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccHHHHHHHHH--
Q 007611 333 NCKRIEKLDDPV---GP----VKEILNRC--PANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIIL-- 401 (596)
Q Consensus 333 ~~~~i~~l~D~~---~~----v~~iL~~~--~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di~aaa~~~L-- 401 (596)
.++.+..+.|.. .. +...+... ..+.++++||+|.......++..+... +....++.+++.....+
T Consensus 86 ~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALDERQVAE 162 (301)
T ss_dssp SCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTCHHHHHH
T ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCCCCCHHH
Confidence 888777665543 22 22334444 567888899999765432233333322 22223555665444333
Q ss_pred -HHHHcCCCCcccCCCCCCCCCCchhhhh-HhhhccCccchhcccccccccCCccccccCCccccCCCCccccc
Q 007611 402 -HDWNEGKIPYYTMPPARDQGIPSEARIV-SELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDE 473 (596)
Q Consensus 402 -~d~~~Gki~~~~~pp~~~~~~~~~~~iv-~~~~~~f~~~el~~~e~~~~~~l~~l~~~~~~e~~~~~p~~~d~ 473 (596)
.++....++.- | ..++.+.+ ++...+|...++++ +. +...++.++||+..+.+++
T Consensus 163 l~~~l~~~l~~~--~------~~y~~~~~~td~~~~~~~~e~~R-e~--------~~~~l~~eiP~~~~v~i~~ 219 (301)
T 1wf3_A 163 LKADLLALMPEG--P------FFYPEDYAKSDQTFGEWVAEILR-EE--------AMKRLWHEVPYAVATKVEE 219 (301)
T ss_dssp HHHHHHTTCCBC--C------CSSCTTCCSBSSCHHHHHHHHHH-HH--------HHHTCCTTHHHHCEEEEEE
T ss_pred HHHHHHHhcccC--C------CCCCcccccCCCCHHHHHHHHHH-HH--------HHHHhhcccCceEEEEEEE
Confidence 23333333210 0 01111223 34455555666666 33 4556668888887777654
No 15
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.46 E-value=1.1e-15 Score=158.01 Aligned_cols=195 Identities=17% Similarity=0.225 Sum_probs=114.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCc-cCCCC-----ChHHHHHh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVV-MLKSG-----ENDASIAL 331 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~-~~~~~-----~~~~~~~L 331 (596)
++.+|+|||.||||||||+|+|++.+++.+++.|++|++.....+ +.++.|+||||+. .+... ...+...+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 457899999999999999999999999889999999987655332 4579999999997 22100 00112234
Q ss_pred hccccccccCCC--chh----HHHHHhhCCcchhhhhhCCCCCCCHHHHHHHHHHHhcccccCCcccHHHHHHHH---HH
Q 007611 332 RNCKRIEKLDDP--VGP----VKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARII---LH 402 (596)
Q Consensus 332 ~~~~~i~~l~D~--~~~----v~~iL~~~~~~~L~~l~ki~~~~~~~e~L~~la~~~g~l~kggi~di~aaa~~~---L~ 402 (596)
..++.+.++.|. ... +...+.....+.++++|++|.......+...+......++...++.+++..... |-
T Consensus 87 ~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~ 166 (301)
T 1ega_A 87 GDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA 166 (301)
T ss_dssp CCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHH
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHH
Confidence 555555554333 121 222344445678888999998764566666555554443333345555433222 22
Q ss_pred HHHcCCCCcccCCCCCCCCCCchhhhhHhhhccCccchhcccccccccCCccccccCCccccCCCCcccc
Q 007611 403 DWNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFD 472 (596)
Q Consensus 403 d~~~Gki~~~~~pp~~~~~~~~~~~iv~~~~~~f~~~el~~~e~~~~~~l~~l~~~~~~e~~~~~p~~~d 472 (596)
++....++.. | ..++.+.+++.+.+|.+.++++ ++ +...++.++||+..+.++
T Consensus 167 ~~i~~~l~~~--~------~~~~~~~~~d~~~~~~~~e~~r-e~--------l~~~l~~e~p~~~~v~i~ 219 (301)
T 1ega_A 167 AIVRKHLPEA--T------HHFPEDYITDRSQRFMASEIIR-EK--------LMRFLGAELPYSVTVEIE 219 (301)
T ss_dssp HHHHTTCCBC--C------CSSCTTCCSCCSHHHHHHHHHH-HH--------HHHHHGGGCCTTEEEEEE
T ss_pred HHHHHhCCcC--C------CCCCccccCCCCHHHHHHHHHH-HH--------HHHHhCCCCCeEEEEEEE
Confidence 2332332210 0 0111123344455555566665 33 445566788888666654
No 16
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.42 E-value=8.5e-14 Score=148.33 Aligned_cols=86 Identities=22% Similarity=0.357 Sum_probs=69.5
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC----hHHHHHhhcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE----NDASIALRNC 334 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~----~~~~~~L~~~ 334 (596)
..+|||||+||||||||+|+|++.+ +.++++||||+++....+ +.++.|+|||||+...... ..+...++.|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 4589999999999999999999998 578999999999887553 6789999999998763322 3456778999
Q ss_pred ccccccCCCchhHH
Q 007611 335 KRIEKLDDPVGPVK 348 (596)
Q Consensus 335 ~~i~~l~D~~~~v~ 348 (596)
+.+.++.|...++.
T Consensus 151 d~il~vvD~~~p~~ 164 (376)
T 4a9a_A 151 NLLFIILDVNKPLH 164 (376)
T ss_dssp SEEEEEEETTSHHH
T ss_pred CccccccccCccHH
Confidence 99998887766543
No 17
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.20 E-value=6.9e-12 Score=136.05 Aligned_cols=105 Identities=26% Similarity=0.308 Sum_probs=66.6
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-CCcEEEEecCCCccCCCC--C----hHHHHHhhcc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSG--E----NDASIALRNC 334 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~--~----~~~~~~L~~~ 334 (596)
+|+|||.||||||||+|.|++.+.+.|+++||+|++..... + +..+.|+||||+...... . ..+..+++++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 69999999999999999999999888999999999876544 3 567999999999753111 1 2345678888
Q ss_pred ccccccCCCc---h----hHHHHHhhCCcchhhhhhCCCCC
Q 007611 335 KRIEKLDDPV---G----PVKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 335 ~~i~~l~D~~---~----~v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
+.+.++.|.. . .+..+|.....+.+++.||+|..
T Consensus 83 d~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 83 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 8887776642 2 23345665677888899999863
No 18
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.18 E-value=1.5e-12 Score=138.21 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=97.7
Q ss_pred cchHHHHHHHH--HHhhhcCeEEEEEeCCCCCCC-C-cHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 007611 130 NSDRAFYKELV--KVIEVSDVILEVLDARDPLGT-R-CIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (596)
Q Consensus 130 ~~~~~~~kel~--kvie~sDVIleVlDARdPl~s-r-~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ 205 (596)
.+.+.+++.+. +|++.+||||+|+|+|.|..+ + ...+.++-.. +| .+..|..+++..
T Consensus 69 ~q~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~la~l~~~----~~--------------rl~~~~~l~~~~- 129 (364)
T 2qtf_A 69 RHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYE----LP--------------IIKETYTKSKIG- 129 (364)
T ss_dssp HHHHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH----HH--------------HHHHC--------
T ss_pred HHHHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHHHHHhhh----ch--------------hhhhhhHHHHhc-
Confidence 34566677776 688999999999999999766 3 3444443221 11 124676655432
Q ss_pred CeEEEEcchhHHhhhcCcCcccCCCCCcccccccccC---HHHHHHHHHhhhh------ccccccceE-EEeecCCCCCc
Q 007611 206 PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLG---AETLIKLLKNYSR------SHEIKKSIT-VGVIGLPNVGK 275 (596)
Q Consensus 206 ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G---~~~Ll~lLk~y~~------~~~~k~~i~-V~vVG~PNVGK 275 (596)
..+.|...... . + ....... ...|...|..... .......+. |+|||+|||||
T Consensus 130 ~~i~~~g~ge~---~-------------~-e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGK 192 (364)
T 2qtf_A 130 EQQGPLGAGTY---G-------------V-ESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGK 192 (364)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHC-------------CCEEEEECBTTSSH
T ss_pred CCCCcCCcCHH---H-------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCH
Confidence 23333210000 0 0 0000000 1222222322211 111122344 99999999999
Q ss_pred chHHHhhhccccccccCCCCceeeeEE--EEe-CCcEEEEecCCCccCCCCC--hH---HHHHhhccccccccCCCchh-
Q 007611 276 SSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSGE--ND---ASIALRNCKRIEKLDDPVGP- 346 (596)
Q Consensus 276 SSLINsL~~~kv~~vs~~PgtTr~~q~--v~l-~~~i~LiDTPGI~~~~~~~--~~---~~~~L~~~~~i~~l~D~~~~- 346 (596)
|||+|+|++... .+++.|++|++... +.+ +..+.++||||++...+.. .. +...+..++.+.++.|...+
T Consensus 193 STLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~ 271 (364)
T 2qtf_A 193 TSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSE 271 (364)
T ss_dssp HHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCH
T ss_pred HHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCc
Confidence 999999999875 78899999987644 444 4578999999987532221 11 12235566666666553221
Q ss_pred ---------HHHHHhhC---CcchhhhhhCCCCCC
Q 007611 347 ---------VKEILNRC---PANLLISLYKLPSFD 369 (596)
Q Consensus 347 ---------v~~iL~~~---~~~~L~~l~ki~~~~ 369 (596)
+..+|..+ ..+.+++.||+|..+
T Consensus 272 ~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 272 NLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred chHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 12344432 345677778887654
No 19
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=2.8e-12 Score=137.75 Aligned_cols=79 Identities=25% Similarity=0.314 Sum_probs=39.2
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-----------------------C----CcEEEEecC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-----------------------D----KNVKLLDCP 315 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-----------------------~----~~i~LiDTP 315 (596)
++|+|||.||||||||+|+|++.+ +.++++||||+.+..... + .++.|+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999998 789999999997665321 1 368999999
Q ss_pred CCccCCCCC----hHHHHHhhccccccccCC
Q 007611 316 GVVMLKSGE----NDASIALRNCKRIEKLDD 342 (596)
Q Consensus 316 GI~~~~~~~----~~~~~~L~~~~~i~~l~D 342 (596)
|+....+.. ..+...+++|+.+.++.|
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD 110 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVD 110 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEE
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEe
Confidence 997532211 111123566666655543
No 20
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.13 E-value=1.4e-11 Score=133.53 Aligned_cols=107 Identities=26% Similarity=0.382 Sum_probs=64.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALRNC 334 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~-----~~~~~~~L~~~ 334 (596)
.+|+|||.||||||||+|+|++.+.+.++++||+|++.....+ +..+.|+||||+...... ......++..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999998899999999999887664 568999999999744211 12234567788
Q ss_pred ccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 335 KRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 335 ~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
+.+.++.|... .+..+|.+...+.+++.||+|...
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 87776655432 233456666778889999998653
No 21
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.13 E-value=2.3e-11 Score=115.11 Aligned_cols=109 Identities=22% Similarity=0.308 Sum_probs=65.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc-cccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCC---hH----HHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGE---ND----ASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k-v~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~---~~----~~~~L~ 332 (596)
..++|+|+|.+|||||||+|+|++.. ...++++||+|+....+.++.++.|+||||+....... .. ....++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYIT 101 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999987 66788999999998888888899999999987653221 11 122333
Q ss_pred cc---ccccccCCC---chh----HHHHHhhCCcchhhhhhCCCCCC
Q 007611 333 NC---KRIEKLDDP---VGP----VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 333 ~~---~~i~~l~D~---~~~----v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
++ +.+..+.|. ... +...+.....+.+++.||+|...
T Consensus 102 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 102 TREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred hhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 33 444444332 221 12334444557777888888654
No 22
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.11 E-value=4.2e-11 Score=112.75 Aligned_cols=109 Identities=28% Similarity=0.269 Sum_probs=77.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCCh-------HHHHHhhc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEN-------DASIALRN 333 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~-------~~~~~L~~ 333 (596)
..++|+|+|.+|||||||+|+|++.....+++++|+|+....+..+.++.|+||||+........ -....+++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKN 101 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhc
Confidence 35789999999999999999999998888999999999988888888999999999876532211 01122333
Q ss_pred c---ccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC
Q 007611 334 C---KRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 334 ~---~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
+ +.+..+.|... .+...+.....+.+++.||+|...
T Consensus 102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK 147 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 2 44444444221 122344555667788889988653
No 23
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.10 E-value=1.8e-11 Score=118.64 Aligned_cols=109 Identities=21% Similarity=0.169 Sum_probs=76.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc-cccccCCCCceeeeEEEEeC----CcEEEEecCCCccCCCCCh-------HHH
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLD----KNVKLLDCPGVVMLKSGEN-------DAS 328 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k-v~~vs~~PgtTr~~q~v~l~----~~i~LiDTPGI~~~~~~~~-------~~~ 328 (596)
..++|+|||.+|||||||+|+|++.. ++.++..||+|+....+.+. ..+.|+||||+..+..... ...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 35789999999999999999999987 67899999999998877665 6899999999876532221 111
Q ss_pred HHhhc---cccccccCCCc---hh----HHHHHhhCCcchhhhhhCCCCCC
Q 007611 329 IALRN---CKRIEKLDDPV---GP----VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 329 ~~L~~---~~~i~~l~D~~---~~----v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
..++. ++.+..+.|.. .. +...+.....+.++++||+|...
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 23333 44454444432 21 22334444567788889998764
No 24
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.09 E-value=4.3e-11 Score=131.39 Aligned_cols=112 Identities=24% Similarity=0.277 Sum_probs=55.7
Q ss_pred cccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEE--Ee-CCcEEEEecCCCccCCCCCh-----HHHHH
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKSGEN-----DASIA 330 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v--~l-~~~i~LiDTPGI~~~~~~~~-----~~~~~ 330 (596)
....++|+|||.||||||||+|+|++...+.+++.||||++.... .+ +..+.|+||||+........ .....
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 345789999999999999999999999888899999999987643 33 45799999999976432111 12224
Q ss_pred hhccccccccCCCch--------hHHHHHhhC-CcchhhhhhCCCCCCC
Q 007611 331 LRNCKRIEKLDDPVG--------PVKEILNRC-PANLLISLYKLPSFDS 370 (596)
Q Consensus 331 L~~~~~i~~l~D~~~--------~v~~iL~~~-~~~~L~~l~ki~~~~~ 370 (596)
+..++.+.++.|... ....++..+ ..+.++++||+|....
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAAN 358 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCc
Confidence 566776666655432 223344443 3567888899997653
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.08 E-value=5.1e-11 Score=129.82 Aligned_cols=107 Identities=26% Similarity=0.361 Sum_probs=67.0
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCC-----hHHHHHhhc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE-----NDASIALRN 333 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~-----~~~~~~L~~ 333 (596)
..+|+|||.||||||||+|+|++.+.+.|+++||+|++.....+ +..+.|+||||+....... ..+..++.+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 46899999999999999999999999899999999999887765 5689999999987432211 234456778
Q ss_pred cccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCC
Q 007611 334 CKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 334 ~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
++.+.++.|... .+..+|.....+.+++.||+|..
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 888777765432 23345666677888889999864
No 26
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.05 E-value=3.5e-10 Score=113.20 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=61.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCC-ceeeeEEEE--e-CCcEEEEecCCCccCCCCChH--------HH
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG-LTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGEND--------AS 328 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pg-tTr~~q~v~--l-~~~i~LiDTPGI~~~~~~~~~--------~~ 328 (596)
..++|+|||.||||||||+|+|++.....++..|+ +|+...... . +.++.|+||||+......... +.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999998777777776 787766433 2 468999999999876443322 12
Q ss_pred HHhhccccccccCCC
Q 007611 329 IALRNCKRIEKLDDP 343 (596)
Q Consensus 329 ~~L~~~~~i~~l~D~ 343 (596)
..+++++.+..+.|.
T Consensus 101 ~~~~~~d~il~V~d~ 115 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQL 115 (260)
T ss_dssp HHTTCCSEEEEEEET
T ss_pred hcCCCCcEEEEEEeC
Confidence 245666766655544
No 27
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.04 E-value=6.6e-11 Score=130.07 Aligned_cols=110 Identities=24% Similarity=0.341 Sum_probs=79.2
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEE--Ee-CCcEEEEecCCCc-cCCCCC-----hHHHHH
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVV-MLKSGE-----NDASIA 330 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v--~l-~~~i~LiDTPGI~-~~~~~~-----~~~~~~ 330 (596)
...++|+|||.||||||||+|+|++...+.++++||||++.... .+ +..+.|+||||+. ...... ......
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 34689999999999999999999999878899999999986543 33 4579999999997 543211 234556
Q ss_pred hhccccccccCCCchh----HHHHHhhC-CcchhhhhhCCCCCC
Q 007611 331 LRNCKRIEKLDDPVGP----VKEILNRC-PANLLISLYKLPSFD 369 (596)
Q Consensus 331 L~~~~~i~~l~D~~~~----v~~iL~~~-~~~~L~~l~ki~~~~ 369 (596)
+..++.+.++.|...+ -..++..+ ..+.+++.||+|...
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCC
T ss_pred hhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECccccc
Confidence 7788877776654221 12233322 446788889998753
No 28
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.03 E-value=9.7e-11 Score=119.20 Aligned_cols=105 Identities=28% Similarity=0.370 Sum_probs=73.6
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC----C--hH---HHH
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG----E--ND---ASI 329 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~----~--~~---~~~ 329 (596)
.++|+|+|.||||||||+|+|++.. ..+++.||+|.......+ +..+.|+||||+...... . .. ...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 5789999999999999999999988 589999999988766443 568999999999765421 1 11 122
Q ss_pred HhhccccccccCCCchh-----HHHHHhhCCcchhhhhhCCCC
Q 007611 330 ALRNCKRIEKLDDPVGP-----VKEILNRCPANLLISLYKLPS 367 (596)
Q Consensus 330 ~L~~~~~i~~l~D~~~~-----v~~iL~~~~~~~L~~l~ki~~ 367 (596)
.+..++.+..+.|.... +...+.....+.++++|++|.
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl 124 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDI 124 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHH
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccc
Confidence 33677777766665432 112233335577777888764
No 29
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.02 E-value=6.2e-10 Score=104.41 Aligned_cols=56 Identities=38% Similarity=0.588 Sum_probs=49.3
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
++|+|+|.+|||||||+|+|++.. ..++..||+|.....+.+. .+.|+||||+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCcccc
Confidence 579999999999999999999887 4678889999988887776 8999999998654
No 30
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.02 E-value=1.2e-10 Score=117.67 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=72.3
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCC----C--h-HHHHHh-
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG----E--N-DASIAL- 331 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~----~--~-~~~~~L- 331 (596)
.+|+|+|.||||||||+|+|++.+ ..+++.||+|.+.....+ +..+.|+||||+...... . . -....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 379999999999999999999987 479999999987665443 457899999999765431 1 1 112223
Q ss_pred -hccccccccCCCchh-----HHHHHhhCCcchhhhhhCCCC
Q 007611 332 -RNCKRIEKLDDPVGP-----VKEILNRCPANLLISLYKLPS 367 (596)
Q Consensus 332 -~~~~~i~~l~D~~~~-----v~~iL~~~~~~~L~~l~ki~~ 367 (596)
.+++.+..+.|.... +...+.....+.++++|++|.
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl 122 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDI 122 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHH
T ss_pred hCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhc
Confidence 667777766665432 222334445677777888763
No 31
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.01 E-value=5.6e-10 Score=112.47 Aligned_cols=122 Identities=25% Similarity=0.229 Sum_probs=77.6
Q ss_pred HHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 245 TLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 245 ~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
.|.+.+..+... ....++|+|||.+|||||||+|+|++...+.+++++++|.....+.+ +..+.|+||||+....
T Consensus 21 ~l~~~~~~~~~~--~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 21 KLIEFFGKLKQK--DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp HHHHHHHHHHHT--TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred HHHHHHHHHhhc--cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 344444443332 12568999999999999999999999998889999999987665443 4579999999998764
Q ss_pred CCChHHHHHhh------ccccccccC--CC--chh-----HHHHHhhCC----cchhhhhhCCCCC
Q 007611 322 SGENDASIALR------NCKRIEKLD--DP--VGP-----VKEILNRCP----ANLLISLYKLPSF 368 (596)
Q Consensus 322 ~~~~~~~~~L~------~~~~i~~l~--D~--~~~-----v~~iL~~~~----~~~L~~l~ki~~~ 368 (596)
.........+. +++.+..+. |. ... +..+...++ .+.+++.|++|..
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 44444433333 445554441 21 111 112222333 2556778888754
No 32
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.01 E-value=7.2e-10 Score=112.08 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=73.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhh-----
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALR----- 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~----- 332 (596)
..++|+|||.+|||||||+|+|++...+.+++.+++|.....+.+ +..+.|+||||+.............+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 468999999999999999999999998889999999987666554 347999999999765433333222222
Q ss_pred -cccccccc--CCC--chhH-HH----HHhhCC----cchhhhhhCCCCCC
Q 007611 333 -NCKRIEKL--DDP--VGPV-KE----ILNRCP----ANLLISLYKLPSFD 369 (596)
Q Consensus 333 -~~~~i~~l--~D~--~~~v-~~----iL~~~~----~~~L~~l~ki~~~~ 369 (596)
.++.+..+ .|. .... .. +...++ .+.++++|++|...
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 45555544 222 1111 12 222333 35677889998653
No 33
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.98 E-value=1.1e-10 Score=123.66 Aligned_cols=82 Identities=27% Similarity=0.378 Sum_probs=57.3
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEeC------------------CcEEEEecCCCccCC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD------------------KNVKLLDCPGVVMLK 321 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l~------------------~~i~LiDTPGI~~~~ 321 (596)
.++|+|||.||||||||+|+|++.. +.++++||||..+.. +.++ ..+.|+||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 3689999999999999999999988 679999999988654 2222 469999999998642
Q ss_pred C----CChHHHHHhhccccccccCCCc
Q 007611 322 S----GENDASIALRNCKRIEKLDDPV 344 (596)
Q Consensus 322 ~----~~~~~~~~L~~~~~i~~l~D~~ 344 (596)
+ ....+...+++|+.+.++.|..
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCF 107 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecC
Confidence 1 1233455678888887776543
No 34
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.97 E-value=4.5e-10 Score=112.49 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=44.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCC-CceeeeEEEEe---CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP-GLTRSMQEVQL---DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P-gtTr~~q~v~l---~~~i~LiDTPGI~~~ 320 (596)
..++|+|||.||||||||+|+|++.....++..+ |+|+..+.+.+ +..+.|+||||+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 4689999999999999999999999877665544 68887765443 568999999999754
No 35
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.94 E-value=3.6e-10 Score=121.05 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=48.9
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe--------------------CCcEEEEecCCCcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--------------------DKNVKLLDCPGVVM 319 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l--------------------~~~i~LiDTPGI~~ 319 (596)
...++|+|||.||||||||+|+|++..+ .++++|+||..+....+ +.++.|+||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3568899999999999999999999886 89999999987655332 23599999999997
Q ss_pred CCCC----ChHHHHHhhccccccccCCC
Q 007611 320 LKSG----ENDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 320 ~~~~----~~~~~~~L~~~~~i~~l~D~ 343 (596)
..+. ...+...+++|+.+.++.|.
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~ 126 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRA 126 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEec
Confidence 5432 23456678888888777654
No 36
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=107.79 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=43.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCC--CceeeeEEEE--e-CCcEEEEecCCCccCCCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP--GLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSG 323 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P--gtTr~~q~v~--l-~~~i~LiDTPGI~~~~~~ 323 (596)
..++|+|||.+|||||||+|+|++.... .+..| ++|+..+... + +..+.|+||||+......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 94 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP 94 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC
Confidence 4689999999999999999999998863 44444 7787766543 3 458999999999876443
No 37
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.92 E-value=7.6e-10 Score=111.76 Aligned_cols=106 Identities=25% Similarity=0.357 Sum_probs=72.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCCh--H-HHHHh--h
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN--D-ASIAL--R 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~--~-~~~~L--~ 332 (596)
+.++|+|||.||||||||+|+|++... .+++.||+|.....+.+ +..+.|+||||+........ . ....+ .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 458899999999999999999999875 58999999988776554 45799999999976533221 1 12222 3
Q ss_pred ccccccccCCCchh-----HHHHHhhCCcchhhhhhCCCC
Q 007611 333 NCKRIEKLDDPVGP-----VKEILNRCPANLLISLYKLPS 367 (596)
Q Consensus 333 ~~~~i~~l~D~~~~-----v~~iL~~~~~~~L~~l~ki~~ 367 (596)
.++.+..+.|.... ....+.....+.++++|++|.
T Consensus 83 ~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDE 122 (258)
T ss_dssp CCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred CCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCC
Confidence 56666555554321 112233345567777788763
No 38
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.90 E-value=1.1e-09 Score=112.53 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=25.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc-----ccccCCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV-----ANVGATP 294 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv-----~~vs~~P 294 (596)
...+|+|||.||||||||||+|++..+ ..++..|
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p 61 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRP 61 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------C
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeee
Confidence 457899999999999999999999887 4556677
No 39
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.89 E-value=1e-09 Score=122.44 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=77.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc--cccCCCCceeeeEEEE----------------------------------
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQ---------------------------------- 304 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~--~vs~~PgtTr~~q~v~---------------------------------- 304 (596)
...+|+|||.||||||||||+|++.+++ .+++.|+||+......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999999976 6899999876422111
Q ss_pred ----eC----CcEEEEecCCCccCCCC------C--hHHHHHhhccccccccCCCch-----hHHHHHhhC---Ccchhh
Q 007611 305 ----LD----KNVKLLDCPGVVMLKSG------E--NDASIALRNCKRIEKLDDPVG-----PVKEILNRC---PANLLI 360 (596)
Q Consensus 305 ----l~----~~i~LiDTPGI~~~~~~------~--~~~~~~L~~~~~i~~l~D~~~-----~v~~iL~~~---~~~~L~ 360 (596)
++ .++.||||||+..+... . ..+...+..++.+..+.|+.. ....++..+ ..+.++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvil 223 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRV 223 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEE
Confidence 00 36999999999864211 1 233445677888777766532 223344433 346788
Q ss_pred hhhCCCCCCCHHHHHHH
Q 007611 361 SLYKLPSFDSVDDFLQK 377 (596)
Q Consensus 361 ~l~ki~~~~~~~e~L~~ 377 (596)
++||+|... ..++...
T Consensus 224 VlNK~Dl~~-~~el~~~ 239 (550)
T 2qpt_A 224 VLNKADMVE-TQQLMRV 239 (550)
T ss_dssp EEECGGGSC-HHHHHHH
T ss_pred EEECCCccC-HHHHHHH
Confidence 899998764 3444443
No 40
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.89 E-value=1.1e-10 Score=127.72 Aligned_cols=110 Identities=25% Similarity=0.369 Sum_probs=68.1
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEe-CCcEEEEecCCCccCCCCCh-----HHHHHh
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSGEN-----DASIAL 331 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l-~~~i~LiDTPGI~~~~~~~~-----~~~~~L 331 (596)
...++|+|||.||||||||+|+|++...+.++..||||++... +.+ +..+.|+||||+........ .....+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 4578999999999999999999999888889999999998653 333 45789999999965422111 122235
Q ss_pred hccccccccCCCch---h-HHHHHhhC-CcchhhhhhCCCCCC
Q 007611 332 RNCKRIEKLDDPVG---P-VKEILNRC-PANLLISLYKLPSFD 369 (596)
Q Consensus 332 ~~~~~i~~l~D~~~---~-v~~iL~~~-~~~~L~~l~ki~~~~ 369 (596)
..++.+..+.|... . ...++..+ ..+.+++.||+|...
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVE 344 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSC
T ss_pred hcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCc
Confidence 56666666555432 1 12333332 246777889988643
No 41
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.88 E-value=1.5e-09 Score=110.73 Aligned_cols=104 Identities=24% Similarity=0.311 Sum_probs=69.4
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe--CCcEEEEecCCCccCCCCC---hHHHHHhh--cc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--DKNVKLLDCPGVVMLKSGE---NDASIALR--NC 334 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l--~~~i~LiDTPGI~~~~~~~---~~~~~~L~--~~ 334 (596)
.++|+|||.||||||||+|+|++.. ..++++||+|.....+.+ +..+.|+||||+....... .-....++ .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 4789999999999999999999987 368999999998776655 4589999999997543221 11122333 46
Q ss_pred ccccccCCCchhH-----HHHHhhCCcchhhhhhCCC
Q 007611 335 KRIEKLDDPVGPV-----KEILNRCPANLLISLYKLP 366 (596)
Q Consensus 335 ~~i~~l~D~~~~v-----~~iL~~~~~~~L~~l~ki~ 366 (596)
+.+..+.|....- ...+...+.+.+++.|++|
T Consensus 82 d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~D 118 (272)
T 3b1v_A 82 DSILNVVDATNLERNLYLTTQLIETGIPVTIALNMID 118 (272)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHH
T ss_pred CEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChh
Confidence 6555555543211 1112223456666677765
No 42
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=9.7e-10 Score=117.69 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=65.9
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--eC------------------CcEEEEecCCCcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--LD------------------KNVKLLDCPGVVM 319 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l~------------------~~i~LiDTPGI~~ 319 (596)
.....|||||.||||||||||+|++..++.++++|+||+.+..+. ++ ..+.++||||++.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 356889999999999999999999999889999999999876533 32 3589999999987
Q ss_pred CCCC----ChHHHHHhhccccccccCCC
Q 007611 320 LKSG----ENDASIALRNCKRIEKLDDP 343 (596)
Q Consensus 320 ~~~~----~~~~~~~L~~~~~i~~l~D~ 343 (596)
.... ...+...++.++.+.++.|.
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~ 125 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRA 125 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEEC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5432 23566677888877665543
No 43
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.86 E-value=1.7e-09 Score=101.43 Aligned_cols=60 Identities=32% Similarity=0.493 Sum_probs=49.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEeC-CcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD-KNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l~-~~i~LiDTPGI~~~ 320 (596)
...+|+|||.||||||||+|+|++...+.+++.||+|++... +.++ ..+.++||||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence 357899999999999999999999887778899999987543 4443 46899999999653
No 44
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.85 E-value=1.4e-09 Score=109.90 Aligned_cols=104 Identities=30% Similarity=0.423 Sum_probs=70.8
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChH---HH--HHhhc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEND---AS--IALRN 333 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~---~~--~~L~~ 333 (596)
.++|+|+|.||||||||+|+|++... .+++.||+|.......+ +..+.|+||||+......... .. ....+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 47899999999999999999999876 89999999988765443 456899999999865332221 11 12245
Q ss_pred cccccccCCCchhH------HHHHhhCCcchhhhhhCCC
Q 007611 334 CKRIEKLDDPVGPV------KEILNRCPANLLISLYKLP 366 (596)
Q Consensus 334 ~~~i~~l~D~~~~v------~~iL~~~~~~~L~~l~ki~ 366 (596)
++.+..+.|..... ..++.....+.++++|++|
T Consensus 82 ~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 120 (271)
T 3k53_A 82 ADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFD 120 (271)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHH
T ss_pred CcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChh
Confidence 66666665554321 1222222256777778776
No 45
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.84 E-value=1.4e-09 Score=124.49 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=75.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCc--------------eeee------EE------------------
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGL--------------TRSM------QE------------------ 302 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pgt--------------Tr~~------q~------------------ 302 (596)
..++|+|||.||||||||||+|+|..+++++..|+| |+.. ..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999999999999999988 4422 00
Q ss_pred -----------------EEeC-----CcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchh-----HHH---HHh
Q 007611 303 -----------------VQLD-----KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-----VKE---ILN 352 (596)
Q Consensus 303 -----------------v~l~-----~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~-----v~~---iL~ 352 (596)
+.++ ..+.|+||||+.........+...+..++.+.++.|+..+ ... .+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0111 4799999999986533233344567888888877665321 111 223
Q ss_pred hCCcchhhhhhCCCCC
Q 007611 353 RCPANLLISLYKLPSF 368 (596)
Q Consensus 353 ~~~~~~L~~l~ki~~~ 368 (596)
....+.++++||+|..
T Consensus 228 ~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 228 GRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TSCCCEEEEEECGGGG
T ss_pred hhCCCEEEEEECcccc
Confidence 3345677888998864
No 46
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.84 E-value=9e-10 Score=100.31 Aligned_cols=106 Identities=29% Similarity=0.316 Sum_probs=62.3
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCCh----HHHHHhhccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN----DASIALRNCK 335 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~----~~~~~L~~~~ 335 (596)
.+|+|+|.+|||||||+|+|.+.....++..|++|.......+ +..+.|+||||......... .....+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 4799999999999999999999887778889999987665443 45799999999976432111 1233456666
Q ss_pred cccccCCCc---hh----HHHHHhhCCcchhhhhhCCCCC
Q 007611 336 RIEKLDDPV---GP----VKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~---~~----v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
.+..+.|.. .. +..++.....+.+++.||+|..
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred EEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 665444332 21 2233444445667777888754
No 47
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.82 E-value=8e-10 Score=112.33 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-----cccCCCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-----NVGATPG 295 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-----~vs~~Pg 295 (596)
..++|+|||.||||||||||+|++...+ .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 4679999999999999999999998865 4566676
No 48
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.81 E-value=2e-09 Score=113.27 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=72.1
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEE--EeC--CcEEEEecCCCccCCCCC----hHHHHHhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QLD--KNVKLLDCPGVVMLKSGE----NDASIALRNC 334 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v--~l~--~~i~LiDTPGI~~~~~~~----~~~~~~L~~~ 334 (596)
..|+|||+||||||||||+|++.+. .++++|++|..+... .++ ..+.|+||||++...... ..+...+..|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4699999999999999999999875 578999999887653 343 579999999987632211 2333445557
Q ss_pred ccccccCCCc-----hhH---H---HHHhh-----CCcchhhhhhCCCCCC
Q 007611 335 KRIEKLDDPV-----GPV---K---EILNR-----CPANLLISLYKLPSFD 369 (596)
Q Consensus 335 ~~i~~l~D~~-----~~v---~---~iL~~-----~~~~~L~~l~ki~~~~ 369 (596)
+.+.++.|.. .++ . ..|.. ...+.++++||+|...
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 7666665542 222 1 12222 2456788889998653
No 49
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.81 E-value=5.7e-09 Score=96.27 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=63.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
..++|+|||.||||||||+|+|++.....+.+.+|+|.....+.++. .+.|+||||...... .......++.++.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK-SWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC--------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccch-hhhHHhhcccCCEE
Confidence 35889999999999999999999998877888899887766666643 578999999864311 11222344555555
Q ss_pred cccCCCch-----hHHHH---HhhC----CcchhhhhhCCCCC
Q 007611 338 EKLDDPVG-----PVKEI---LNRC----PANLLISLYKLPSF 368 (596)
Q Consensus 338 ~~l~D~~~-----~v~~i---L~~~----~~~~L~~l~ki~~~ 368 (596)
..+-|... .+..+ +... ..+.+++.||+|..
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 44433321 12111 2222 34677788998864
No 50
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.79 E-value=3.5e-09 Score=98.14 Aligned_cols=58 Identities=40% Similarity=0.656 Sum_probs=42.1
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEe-CCcEEEEecCCCccC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVML 320 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l-~~~i~LiDTPGI~~~ 320 (596)
..+|+|||.||||||||+|+|++... .++..||+|..... +.+ +..+.++||||....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 47899999999999999999998764 56788998876543 333 457899999998754
No 51
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.78 E-value=9.8e-09 Score=104.04 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=39.6
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccC-------CCCceeeeEEEEe--CC---cEEEEecCCCccC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGA-------TPGLTRSMQEVQL--DK---NVKLLDCPGVVML 320 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~-------~PgtTr~~q~v~l--~~---~i~LiDTPGI~~~ 320 (596)
.++|+|||.||||||||+|+|++..+..... .|+++.......+ +. .+.|+||||+...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 4889999999999999999999988755543 3444444444433 22 7899999999644
No 52
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.77 E-value=2.8e-09 Score=113.28 Aligned_cols=81 Identities=30% Similarity=0.390 Sum_probs=61.9
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE------------------------eCCcEEEEecCCCc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ------------------------LDKNVKLLDCPGVV 318 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~------------------------l~~~i~LiDTPGI~ 318 (596)
++|+|||.||||||||+|+|++.. +.++++|++|..+.... .+..+.|+||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 569999999999999999999986 57889999987654322 13469999999998
Q ss_pred cCCCC----ChHHHHHhhccccccccCCCc
Q 007611 319 MLKSG----ENDASIALRNCKRIEKLDDPV 344 (596)
Q Consensus 319 ~~~~~----~~~~~~~L~~~~~i~~l~D~~ 344 (596)
...+. ...+...++.|+.+.++.|..
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCF 110 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECC
Confidence 65322 244556788888887776553
No 53
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.75 E-value=6.7e-09 Score=112.34 Aligned_cols=109 Identities=21% Similarity=0.194 Sum_probs=69.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe--C-C-cEEEEecCCCccCCCC----ChHHHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--D-K-NVKLLDCPGVVMLKSG----ENDASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l--~-~-~i~LiDTPGI~~~~~~----~~~~~~~L~ 332 (596)
..++|+|||.+|||||||+|+|++...+.++..+|+|.+.....+ . . .+.|+||||+...... .......+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 458899999999999999999999998888999999988765443 2 2 7999999999764322 123455677
Q ss_pred ccccccccCCCch--h---HHHHHhhCCcchhhhhhCCCCCC
Q 007611 333 NCKRIEKLDDPVG--P---VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 333 ~~~~i~~l~D~~~--~---v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
.++.+..+.|... . +...+.....+.++++||+|...
T Consensus 113 ~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 113 RADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLG 154 (423)
T ss_dssp SCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTT
T ss_pred cCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCC
Confidence 8887777766521 1 22334455678888999998764
No 54
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.74 E-value=7.5e-09 Score=101.31 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=44.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~ 320 (596)
..++|+|||.+|||||||+|+|++.... +++.+++|+......+ +..+.|+||||+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence 4689999999999999999999998864 7788999988765443 357899999999653
No 55
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.73 E-value=8.2e-09 Score=96.82 Aligned_cols=59 Identities=41% Similarity=0.644 Sum_probs=48.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--e-CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l-~~~i~LiDTPGI~~~ 320 (596)
..++|+|||.+|||||||+|+|++... .++..||+|.+..... . +..+.|+||||....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 457999999999999999999998763 6778899987765443 3 457899999998754
No 56
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.72 E-value=6.9e-09 Score=99.45 Aligned_cols=61 Identities=31% Similarity=0.462 Sum_probs=41.3
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc-cccccCCCCceeeeEEEEeCCcEEEEecCCCccC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k-v~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~ 320 (596)
.....|+|||.+|||||||+|+|++.. .+.+++++|+|+....+.++.++.++||||+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA 85 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCccc
Confidence 356789999999999999999999987 6677899999998776666668999999998653
No 57
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.72 E-value=1.3e-08 Score=92.99 Aligned_cols=104 Identities=23% Similarity=0.264 Sum_probs=67.5
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
.++|+|+|.+|||||||+|+|++.... ...+++|++.....+.++. .+.|+||||..... ......+.+++.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~~~~~~~~d~~ 79 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA---SLAPXYYRNAQAA 79 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GGHHHHHTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh---hhhhhhhccCcEE
Confidence 478999999999999999999987643 3455667666666666543 68999999965321 2234556777776
Q ss_pred cccCCCchh-----H----HHHHhhC--CcchhhhhhCCCCC
Q 007611 338 EKLDDPVGP-----V----KEILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 338 ~~l~D~~~~-----v----~~iL~~~--~~~~L~~l~ki~~~ 368 (596)
..+.|...+ + ..+...+ ..+.+++.||+|..
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 80 LVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 666554322 1 1223332 23455666777643
No 58
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.71 E-value=1e-08 Score=115.11 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=48.3
Q ss_pred HHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccccc-cccCCC-CceeeeEEE------EeCCcEEEEecCCC
Q 007611 246 LIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATP-GLTRSMQEV------QLDKNVKLLDCPGV 317 (596)
Q Consensus 246 Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~P-gtTr~~q~v------~l~~~i~LiDTPGI 317 (596)
.+++|..+. ...+.|+|||.||||||||||+|+|...+ .++.++ ++|+....+ ..+..++||||||+
T Consensus 27 al~~L~~i~-----~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 27 ALKILSAIT-----QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp HHHHHHTCC-----SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred HHHHHHhcc-----CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence 345665531 24588999999999999999999998753 333322 444444322 12467999999999
Q ss_pred ccC
Q 007611 318 VML 320 (596)
Q Consensus 318 ~~~ 320 (596)
...
T Consensus 102 ~~~ 104 (592)
T 1f5n_A 102 GDV 104 (592)
T ss_dssp CCG
T ss_pred Ccc
Confidence 865
No 59
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.70 E-value=2.6e-09 Score=100.71 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=67.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
..++|+|+|.+|||||||+|+|++.....+.++.|.+.....+ -+..+.|+||||...... .....+++++.+..+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLRS---SWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEE-TTEEEEEEECCC----CG---GGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEE-CCEEEEEEECCCCHhHHH---HHHHHhcCCCEEEEE
Confidence 5789999999999999999999977655666666755433222 245789999999864322 223456777766655
Q ss_pred CCCch-----hH----HHHHhh---CCcchhhhhhCCCCCC
Q 007611 341 DDPVG-----PV----KEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 341 ~D~~~-----~v----~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
.|... .+ ..++.. ...+.+++.||+|...
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 44322 12 223332 3456788889998754
No 60
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.69 E-value=2e-08 Score=94.39 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=65.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---------------------------------
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD--------------------------------- 306 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~--------------------------------- 306 (596)
..++|+|+|.+|||||||||+|++..... ..++.|.+.....+.++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999876421 11222222222223322
Q ss_pred -------CcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchh-----H----HHHHhhCCcchhhhhhCCC
Q 007611 307 -------KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-----V----KEILNRCPANLLISLYKLP 366 (596)
Q Consensus 307 -------~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~-----v----~~iL~~~~~~~L~~l~ki~ 366 (596)
..+.|+||||..... ......++.++.+..+.|...+ + ..+...+..+.+++.||+|
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYA---SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCT---TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred ccCccceeEEEEEECCCcHHHH---HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 468999999965432 2244566777777766655332 1 2233445567788889998
No 61
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.69 E-value=1.8e-08 Score=92.51 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=65.5
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
...++|+|+|.+|||||||+|+|.+.......++.|.+.. .+.+ +..+.|+||||...... .....+++++.+.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~---~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYKNLKFQVWDLGGLTSIRP---YWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEETTEEEEEEEECCCGGGGG---GGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceE--EEEECCEEEEEEECCCChhhhH---HHHHHhccCCEEE
Confidence 3568999999999999999999998776544455554432 2222 45789999999854321 1122345566555
Q ss_pred ccCCCch-----hH----HHHHhh---CCcchhhhhhCCCCCC
Q 007611 339 KLDDPVG-----PV----KEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 339 ~l~D~~~-----~v----~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
.+.|... .+ ..++.. ...+.+++.||+|...
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 4444321 12 122322 2446778889988654
No 62
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.9e-08 Score=94.80 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhhc---cccccceEEEeecCCCCCcchHHHhhhccccc--cccCCCCceeeeEEEEeCCcEEEEecCCC
Q 007611 243 AETLIKLLKNYSRS---HEIKKSITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQLDKNVKLLDCPGV 317 (596)
Q Consensus 243 ~~~Ll~lLk~y~~~---~~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~--~vs~~PgtTr~~q~v~l~~~i~LiDTPGI 317 (596)
...+.+.+..+... ......++|+|+|.+|||||||+|+|++.... .++..|++|... ....+.|+||||.
T Consensus 26 ~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~ 101 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGH 101 (193)
T ss_dssp CHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCC
Confidence 34566666555432 12245789999999999999999999987632 224445555433 3457899999999
Q ss_pred ccCCCCChH-HHHHhhccccccccCCCc-h--h-------HHHHHhh------CCcchhhhhhCCCCCC--CHHHHHHHH
Q 007611 318 VMLKSGEND-ASIALRNCKRIEKLDDPV-G--P-------VKEILNR------CPANLLISLYKLPSFD--SVDDFLQKV 378 (596)
Q Consensus 318 ~~~~~~~~~-~~~~L~~~~~i~~l~D~~-~--~-------v~~iL~~------~~~~~L~~l~ki~~~~--~~~e~L~~l 378 (596)
......... ....+..++.+..+.|.. . . +..++.. ...+.+++.||+|... ...++...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp CBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 755322111 112222355555554443 1 1 1122222 1446778889998753 455555555
Q ss_pred HH
Q 007611 379 AT 380 (596)
Q Consensus 379 a~ 380 (596)
..
T Consensus 182 ~~ 183 (193)
T 2ged_A 182 ES 183 (193)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 63
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.68 E-value=1.1e-08 Score=93.66 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=51.8
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe--CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l--~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
.++|+|||.||||||||+|+|.+.....+++++|+|.......- ...+.++||||....... ....+++++.+..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWL---PGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC------------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhh---hhhhhhhCCEEEE
Confidence 47899999999999999999999888888889999886433221 235789999997643221 1223455555444
Q ss_pred cCCCch-----hHH----HHHhh---CCcchhhhhhCCCCC
Q 007611 340 LDDPVG-----PVK----EILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 340 l~D~~~-----~v~----~iL~~---~~~~~L~~l~ki~~~ 368 (596)
+-|... .+. .++.. ...+.+++.||+|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 433221 111 22222 134667788998864
No 64
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.63 E-value=3.5e-08 Score=94.41 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=64.8
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCcee--eeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR--SMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNC 334 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr--~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~ 334 (596)
...++|+|||.||||||||+|+|++.... ....|.+|. ....+.++. .+.|+||||....... ....+..+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~ 93 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI---TTAYYRGA 93 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC---CHHHHTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH---HHHHhccC
Confidence 45689999999999999999999987642 333344443 333444443 6899999997644221 23456677
Q ss_pred ccccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCC
Q 007611 335 KRIEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPS 367 (596)
Q Consensus 335 ~~i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~ 367 (596)
+.+..+.|.... +. .+...+ ..+.+++.||+|.
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 766655554321 11 222222 3466778888886
No 65
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.63 E-value=3.7e-08 Score=89.50 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=60.4
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCcee--eeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR--SMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr--~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
.++|+|+|.||||||||+|+|++..... ..+.++. ....+.++. .+.|+||||.... .......+.+++.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~~~~~~~~~~~~ 77 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF---ASMRDLYIKNGQG 77 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---HHHHHHHHHHCSE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhh---HHHHHHHhccCCE
Confidence 5789999999999999999999876432 2222322 223344432 4889999996532 1222344566665
Q ss_pred ccccCCCchh-----H----HHHHhhC---CcchhhhhhCCCC
Q 007611 337 IEKLDDPVGP-----V----KEILNRC---PANLLISLYKLPS 367 (596)
Q Consensus 337 i~~l~D~~~~-----v----~~iL~~~---~~~~L~~l~ki~~ 367 (596)
+..+-|...+ + ..++..+ ..+.+++.||+|.
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 5544443221 1 2233332 3466777888875
No 66
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.62 E-value=2.3e-08 Score=93.78 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=69.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
+.++|+|||.+|||||||+|+|++.....+.+++|++.....+ -+..+.|+||||....... ....+++++.+..+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d~ii~v 95 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLRSS---WNTYYTNTEFVIVV 95 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEE-TTEEEEEEEESSSGGGTCG---GGGGGTTCCEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEE-CCEEEEEEECCCCHhHHHH---HHHHhccCCEEEEE
Confidence 4689999999999999999999998877778888876543322 2457899999998543221 12345666666555
Q ss_pred CCCch-----hH----HHHHhh---CCcchhhhhhCCCCCC
Q 007611 341 DDPVG-----PV----KEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 341 ~D~~~-----~v----~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
.|... .+ ..++.. ...+.+++.||+|...
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 44321 11 223332 3446677889988653
No 67
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.62 E-value=2.8e-08 Score=92.58 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=64.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
..++|+|+|.+|||||||+|+|++.......++.|.+.. .+.+ +..+.++||||....... ....+.+++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d~ii~ 91 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTSIRPY---WRCYYADTAAVIF 91 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETTEEEEEEEEC----CCTT---GGGTTTTEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEECCEEEEEEECCCCHhHHHH---HHHHhccCCEEEE
Confidence 578999999999999999999998777677777776543 2333 457899999998653221 1223456665554
Q ss_pred cCCCch-----hH----HHHHhh---CCcchhhhhhCCCCCC
Q 007611 340 LDDPVG-----PV----KEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 340 l~D~~~-----~v----~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
+.|... .+ ..++.. ...+.+++.||+|...
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 444221 11 223332 2346777889988643
No 68
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.60 E-value=9.1e-08 Score=88.76 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=66.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++...... .++.|++.....+.++ ..+.|+||||..... ......+++++.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~ 87 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---SLAPMYYRGAAA 87 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG---GGTHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh---hhhHHHhccCCE
Confidence 468999999999999999999998775433 2344555555555553 368999999965332 122345667776
Q ss_pred ccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~~ 368 (596)
+..+.|.... +. .+...+ ..+.+++.||+|..
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 6666554321 11 222332 33567778888864
No 69
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.60 E-value=9e-08 Score=89.26 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=61.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
+.++|+|+|.+|||||||+|+|++... +...+++|..... +.++. .+.|+||||...... .....+.+++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~ 77 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---MRDQYMRTGE 77 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT---THHHHHHHCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH---HHHHHHhcCC
Confidence 458999999999999999999998774 4445555544332 33332 367899999764422 2234455566
Q ss_pred cccccCCCch-----hH----HHHHhhC---CcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVG-----PV----KEILNRC---PANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~-----~v----~~iL~~~---~~~~L~~l~ki~~~ 368 (596)
.+..+.|... .+ ..++... ..+.+++.|++|..
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 78 GFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 5554444322 11 1222222 34677788998864
No 70
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.60 E-value=2.8e-08 Score=93.61 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=70.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
..++|+|||.+|||||||+|+|.+.....+.+++|++.....+. +..+.++||||..... ......+++++.+..+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~-~~~l~i~Dt~G~~~~~---~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ-GFKLNVWDIGGQRKIR---PYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEET-TEEEEEEECSSCGGGH---HHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEEC-CEEEEEEECCCCHHHH---HHHHHHhCCCCEEEEE
Confidence 56899999999999999999999988777777888665433322 4578999999975321 2233456777777655
Q ss_pred CCCch-----hHH----HHHhh---CCcchhhhhhCCCCCC
Q 007611 341 DDPVG-----PVK----EILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 341 ~D~~~-----~v~----~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
.|... .+. .++.. ...+.+++.||+|...
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 54332 111 22222 2346677788988653
No 71
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.60 E-value=1.4e-08 Score=110.23 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=67.5
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccc------------------------------cCCCCceeeeEEEEe---C
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANV------------------------------GATPGLTRSMQEVQL---D 306 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~v------------------------------s~~PgtTr~~q~v~l---~ 306 (596)
+..++|++||++|+|||||+|+|++...... ...+|+|.+.....+ +
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 3568999999999999999999965432111 122688888765443 4
Q ss_pred CcEEEEecCCCccCCCCChHHHHHhhccccccccCCCch-----------hH---HHHHhhCCcc-hhhhhhCCCCC
Q 007611 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG-----------PV---KEILNRCPAN-LLISLYKLPSF 368 (596)
Q Consensus 307 ~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~-----------~v---~~iL~~~~~~-~L~~l~ki~~~ 368 (596)
.++.|+||||.... .......+..++.+..+.|... .. ..++...+.+ .++++||+|..
T Consensus 95 ~~~~iiDTPGh~~f---~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 95 KHFTILDAPGHKSF---VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred eEEEEEECCChHHH---HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 58999999997532 1223334556666655544322 11 2233444555 67788999964
No 72
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.59 E-value=3.9e-08 Score=93.20 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=69.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++... ..+.+++|+|.....+.++ ..+.|+||||..... ......+.+++.
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~ 98 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH---SLAPMYYRGSAA 98 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG---GGTHHHHTTCSE
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH---hhhHHhhccCCE
Confidence 468999999999999999999998774 3577888988877776654 368999999965432 122345666666
Q ss_pred ccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPS 367 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~ 367 (596)
+..+.|.... +. .+...+ ..+.+++.||+|.
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl 140 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 6555443221 11 122222 3456667788775
No 73
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=8.9e-08 Score=88.74 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=64.4
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNC 334 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~ 334 (596)
...++|+|+|.+|||||||+|+|++.........|.++.... .+.++. .+.|+||||...... .....+.++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~~~~~~~~~ 84 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS---VTHAYYRDA 84 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------CCGGGC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH---HHHHHccCC
Confidence 356899999999999999999999887644444455544433 234443 688999999653211 122245666
Q ss_pred ccccccCCCchh-----H----HHHHhhC--CcchhhhhhCCCCCC
Q 007611 335 KRIEKLDDPVGP-----V----KEILNRC--PANLLISLYKLPSFD 369 (596)
Q Consensus 335 ~~i~~l~D~~~~-----v----~~iL~~~--~~~~L~~l~ki~~~~ 369 (596)
+.+..+.|.... + ..+...+ ..+.+++.||+|...
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 666555444321 1 1222222 346777889988653
No 74
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.58 E-value=2.6e-08 Score=93.81 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=64.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
+.++|+|||.+|||||||+|+|++.......++.|.+.....+ -+..+.|+||||........ ...+++++.+..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~---~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQY-KNISFEVWDLGGQTGVRPYW---RCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEE-TTEEEEEEEECCSSSSCCCC---SSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEE-CCEEEEEEECCCCHhHHHHH---HHHhhcCCEEEEE
Confidence 4689999999999999999999987765555555544332222 14578999999986432211 1134455555444
Q ss_pred CCCc-----hhH----HHHHhh---CCcchhhhhhCCCCCC
Q 007611 341 DDPV-----GPV----KEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 341 ~D~~-----~~v----~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
.|.. ..+ ..++.. ...+.+++.||+|...
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 3332 112 223332 2346778889998654
No 75
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.58 E-value=9.5e-08 Score=87.12 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=60.9
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
.++|+|+|.+|||||||+|+|++.... ...+.++... ..+.++ ..+.|+||||..... ......+++++.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---~~~~~~~~~~d~ 77 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT---AMRDLYMKNGQG 77 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST---THHHHHHHHCSE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH---HHHHHHhccCCE
Confidence 578999999999999999999987542 2222333222 223333 258899999976432 223345566666
Q ss_pred ccccCCCch-----hH----HHHHhh---CCcchhhhhhCCCCC
Q 007611 337 IEKLDDPVG-----PV----KEILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~-----~v----~~iL~~---~~~~~L~~l~ki~~~ 368 (596)
+..+-|... .+ ..++.. ...+.+++.||+|..
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 554443321 11 123332 244667788888864
No 76
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=7.5e-08 Score=90.41 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=68.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||||+|++.... ...++.|++.....+.++ ..+.|+||||...... .....+++++.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d~ 90 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT---LTPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC---SHHHHHTTCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh---hhHHHhccCCE
Confidence 4689999999999999999999987643 334555666666666554 3588999999754322 23445677777
Q ss_pred ccccCCCchh-----HH----HHHhhC---CcchhhhhhCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC---PANLLISLYKLPS 367 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~---~~~~L~~l~ki~~ 367 (596)
+..+.|...+ +. .+...+ ..+.+++.||+|.
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 7666554322 11 222222 2356777888885
No 77
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.57 E-value=6.1e-08 Score=88.15 Aligned_cols=102 Identities=18% Similarity=0.073 Sum_probs=60.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++.... ...++++.... .+.++. .+.|+||||.... .......+++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~~~~~~~~~~d 77 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AAIRDNYFRSGE 77 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C---HHHHHHHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh---HHHHHHHhhcCC
Confidence 3588999999999999999999987742 33334433222 233433 6889999996532 122334556666
Q ss_pred cccccCCCchh-----H----HHHHhhC---CcchhhhhhCCCC
Q 007611 336 RIEKLDDPVGP-----V----KEILNRC---PANLLISLYKLPS 367 (596)
Q Consensus 336 ~i~~l~D~~~~-----v----~~iL~~~---~~~~L~~l~ki~~ 367 (596)
.+..+-|...+ + ..++..+ ..+.+++.||+|.
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 78 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence 66555444321 1 1223222 3466777788774
No 78
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.56 E-value=6.6e-08 Score=90.03 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=61.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++... ....++.+.+. ...+.++ ..+.|+||||......... ..+++++.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---~~~~~~~~ 80 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQ---TYSIDING 80 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCG---GGTTTCSE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHH---HHHhcCCE
Confidence 468999999999999999999996552 23333444443 2333443 3568999999865422111 23445555
Q ss_pred ccccCCCch-----hHH----HHHhhC---CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVG-----PVK----EILNRC---PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~-----~v~----~iL~~~---~~~~L~~l~ki~~~ 368 (596)
+..+.|... .+. .++..+ ..+.+++.||+|..
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 544433322 111 233332 34667788998853
No 79
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.56 E-value=6.3e-08 Score=101.84 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-----cccCCCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-----NVGATPG 295 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-----~vs~~Pg 295 (596)
...+|+|||.||||||||||+|++.+.+ .++..|+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 3579999999999999999999998875 5566676
No 80
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.56 E-value=5.2e-08 Score=91.90 Aligned_cols=104 Identities=22% Similarity=0.259 Sum_probs=64.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc--cccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH--VANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k--v~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
..++|+|||.+|||||||+|+|++.. .....++.|.+. ..+.+ +..+.|+||||...... .....+.+++.+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~i 94 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI--EKFKSSSLSFTVFDMSGQGRYRN---LWEHYYKEGQAI 94 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE--EEEECSSCEEEEEEECCSTTTGG---GGGGGGGGCSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE--EEEEECCEEEEEEECCCCHHHHH---HHHHHHhcCCEE
Confidence 46899999999999999999999887 333333444332 22333 45899999999654321 122345666666
Q ss_pred cccCCCchh---------HHHHHhh-----CCcchhhhhhCCCCCC
Q 007611 338 EKLDDPVGP---------VKEILNR-----CPANLLISLYKLPSFD 369 (596)
Q Consensus 338 ~~l~D~~~~---------v~~iL~~-----~~~~~L~~l~ki~~~~ 369 (596)
..+.|.... +..++.. ...+.+++.||+|...
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 655554321 1223333 2446777889988653
No 81
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.56 E-value=9.5e-08 Score=90.19 Aligned_cols=106 Identities=19% Similarity=0.194 Sum_probs=66.9
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcccccccc-CCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVG-ATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs-~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
...++|+|||.+|||||||||+|++....... ++.|++.....+.++ ..+.|+||||..... ......+++++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d 99 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR---AITSAYYRGAV 99 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC---TTHHHHHTTCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh---hhhHHHhccCC
Confidence 34689999999999999999999987754332 334555544444442 368899999986432 22344567777
Q ss_pred cccccCCCchh-----HHH----HHhhC--CcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP-----VKE----ILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~-----v~~----iL~~~--~~~~L~~l~ki~~~ 368 (596)
.+..+.|...+ +.. +...+ ..+.+++.||+|..
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 66666554321 111 22222 33566777887753
No 82
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.55 E-value=1.4e-08 Score=106.94 Aligned_cols=102 Identities=22% Similarity=0.268 Sum_probs=57.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhc------cccccccCCC-------------------------------------Cce
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKR------CHVANVGATP-------------------------------------GLT 297 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~------~kv~~vs~~P-------------------------------------gtT 297 (596)
....|+|+|+||||||||+|.|++ .+++.++.-| |+|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 368899999999999999999996 2333333323 344
Q ss_pred eeeEEEE-----eCCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchhH--HHHH-hhCCcchhhhhhCCCCC
Q 007611 298 RSMQEVQ-----LDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPV--KEIL-NRCPANLLISLYKLPSF 368 (596)
Q Consensus 298 r~~q~v~-----l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~v--~~iL-~~~~~~~L~~l~ki~~~ 368 (596)
++..... -+..++|+||||+..+. ......++.+.++.|+.... ..+. .....+.++++||+|..
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~------~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE------FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH------HHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGG
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh------hhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCC
Confidence 3221110 14578999999986431 22456677666776654321 1111 11223566777888764
No 83
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.55 E-value=5e-08 Score=94.53 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=71.3
Q ss_pred cceEEEeecCCCCCcchHHHhhh-ccccccccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK-RCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~-~~kv~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|+ +.....+.+++|+|.....+.++ ..+.|+||||....... ....+++++.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~~~ 90 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL---RDGYYIQAQC 90 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC---CHHHHTTCCE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH---HHHHHhcCCE
Confidence 56899999999999999999955 44455678899999988777664 36889999997543221 2235566666
Q ss_pred ccccCCCchh---------HHHHHhhC-CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP---------VKEILNRC-PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~---------v~~iL~~~-~~~~L~~l~ki~~~ 368 (596)
+..+.|.... +..+...+ ..+.+++.||+|..
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 6655544321 12233333 34677778888864
No 84
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.55 E-value=6.9e-08 Score=88.33 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=57.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++... ....+++|+|.....+.++ ..+.|+||||..... ......+.+++.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~~~~~~ 81 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR---ALAPMYYRGSAA 81 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GGTHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh---cccHhhCcCCCE
Confidence 458999999999999999999998873 3456778888776666654 468899999985332 122334566665
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+-|.
T Consensus 82 ~i~v~d~ 88 (170)
T 1z0j_A 82 AIIVYDI 88 (170)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 5544443
No 85
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.54 E-value=3.5e-08 Score=101.93 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=71.6
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCC--CChHHHHHhhccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKS--GENDASIALRNCK 335 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~--~~~~~~~~L~~~~ 335 (596)
.++|+|+|.||||||||+|+|++.....+++.+|+|.......+ +..+.|+||||...... ........+++++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 47899999999999999999998866677888999988766543 24688999999853200 0112334556777
Q ss_pred cccccCCCch-----hHH---HHHhh----C-CcchhhhhhCCCCCC
Q 007611 336 RIEKLDDPVG-----PVK---EILNR----C-PANLLISLYKLPSFD 369 (596)
Q Consensus 336 ~i~~l~D~~~-----~v~---~iL~~----~-~~~~L~~l~ki~~~~ 369 (596)
.+..+-|... .+. ..+.. + ..+.+++.||+|...
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 6665544322 111 11221 1 356777889988654
No 86
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.53 E-value=1.2e-07 Score=89.39 Aligned_cols=106 Identities=20% Similarity=0.194 Sum_probs=67.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++..... ..++.|++.....+.++. .+.|+||||..... .......+++++.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~d~ 96 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR--KSMVQHYYRNVHA 96 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH--TTTHHHHHTTCCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh--hhhhHHHhcCCCE
Confidence 46899999999999999999999876532 233444444444555543 68999999965321 1123345677777
Q ss_pred ccccCCCchh-----H----HHHHhhC---CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----V----KEILNRC---PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v----~~iL~~~---~~~~L~~l~ki~~~ 368 (596)
+..+.|.... + ..++..+ ..+.+++.||+|..
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 7666554321 1 2233332 34667778888863
No 87
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.53 E-value=6.4e-08 Score=88.36 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=62.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++..... ..++.|.+.....+.++. .+.|+||||....... ....+.+++.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d~ 80 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI---TKAYYRGAQA 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC---CHHHHTTCCE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH---HHHHhcCCCE
Confidence 45899999999999999999999876432 222333333333344433 6899999997643222 2335566666
Q ss_pred ccccCCCchh-----HH----HHHhhC-CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC-PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~-~~~~L~~l~ki~~~ 368 (596)
+..+.|...+ +. .+...+ ..+.+++.||+|..
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 81 CVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 6555444321 11 122221 34566677887743
No 88
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.53 E-value=7.1e-08 Score=91.90 Aligned_cols=104 Identities=22% Similarity=0.269 Sum_probs=60.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++... ..+.+++|+|.....+.++. .+.|+||||.... .......+++++.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF---RSIAKSYFRKADG 103 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC---HHHHHHHHHHCSE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch---hhhHHHHHhhCCE
Confidence 468999999999999999999998763 34556667766666666543 5889999996432 1223445667777
Q ss_pred ccccCCCchh-----HHHH---Hh-hC--CcchhhhhhCCCC
Q 007611 337 IEKLDDPVGP-----VKEI---LN-RC--PANLLISLYKLPS 367 (596)
Q Consensus 337 i~~l~D~~~~-----v~~i---L~-~~--~~~~L~~l~ki~~ 367 (596)
+..+.|.... +..+ +. .+ ..+.+++.||+|.
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 145 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADI 145 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGG
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 6666554321 1111 22 11 3456667777764
No 89
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.53 E-value=3.6e-08 Score=93.14 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=64.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccc--cCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV--GATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~v--s~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
...+|+|||.+|||||||+|+|++.....+ .++.|++..... .-...+.|+||||...... .....+++++.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d~ii 91 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFE-KGRVAFTVFDMGGAKKFRG---LWETYYDNIDAVI 91 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEE-ETTEEEEEEEECCSGGGGG---GGGGGCTTCSEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEE-eCCEEEEEEECCCCHhHHH---HHHHHHhcCCEEE
Confidence 568999999999999999999999887665 566665443221 1245789999999864321 1122456666665
Q ss_pred ccCCCch-----hH----HHHHhh----------CCcchhhhhhCCCCCC
Q 007611 339 KLDDPVG-----PV----KEILNR----------CPANLLISLYKLPSFD 369 (596)
Q Consensus 339 ~l~D~~~-----~v----~~iL~~----------~~~~~L~~l~ki~~~~ 369 (596)
.+.|... .+ ..++.. ...+.+++.||+|...
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 5544332 12 122222 1446777889998754
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.53 E-value=6.9e-08 Score=91.68 Aligned_cols=103 Identities=21% Similarity=0.209 Sum_probs=65.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
+.++|+|||.||||||||+|+|.+.....+.++.|.+.. .+.+ +..+.++||||....... ....+++++.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--ELAIGNIKFTTFDLGGHIQARRL---WKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--EEEETTEEEEEEECCCSGGGTTS---GGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeE--EEEECCEEEEEEECCCCHHHHHH---HHHHHhcCCEEEE
Confidence 467999999999999999999998887767777777643 3333 357899999998654321 1123455665554
Q ss_pred cCCCchh-----H----HHHHhh---CCcchhhhhhCCCCC
Q 007611 340 LDDPVGP-----V----KEILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 340 l~D~~~~-----v----~~iL~~---~~~~~L~~l~ki~~~ 368 (596)
+.|.... + ..++.. ...+.+++.||+|..
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 4443221 1 123321 234677788888864
No 91
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.53 E-value=1.4e-07 Score=88.93 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=66.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++..... ..++.|+|.....+..+ ..+.|+||||....... ....+.+++.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d~ 97 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI---TTAYYRGAMG 97 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS---GGGGGTTCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh---HHHhccCCCE
Confidence 45899999999999999999999877532 34555666655555543 36899999996543221 2234556666
Q ss_pred ccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~~ 368 (596)
+..+.|.... +. .+...+ ..+.+++.||+|..
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 6555443221 11 222222 34677788888864
No 92
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.52 E-value=2.7e-08 Score=92.08 Aligned_cols=106 Identities=18% Similarity=0.342 Sum_probs=64.0
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEe-CCcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
.+.++|+|+|.+|||||||+|+|++... ..+..|++|.+... +.+ +..+.|+||||......... ..+..++.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---~~~~~~d~ 81 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA---RGAQVTDI 81 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC---SSCCCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH---HHHhhCCE
Confidence 3578999999999999999999998775 34556666655432 333 45788999999754322111 12334444
Q ss_pred ccccCCC---c-hhHHHHHh---hCCcchhhhhhCCCCCC
Q 007611 337 IEKLDDP---V-GPVKEILN---RCPANLLISLYKLPSFD 369 (596)
Q Consensus 337 i~~l~D~---~-~~v~~iL~---~~~~~~L~~l~ki~~~~ 369 (596)
+..+.|. . ......+. ....+.+++.||+|...
T Consensus 82 ~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp EEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 4333332 1 11122222 22446777889988654
No 93
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.52 E-value=1.6e-07 Score=88.44 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=66.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++.... ....|++|.. ...+.++. .+.|+||||..... ......++.++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d 90 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR---TITSSYYRGAH 90 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC---TTHHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh---hhHHHHHhhCC
Confidence 4689999999999999999999987642 3334444443 34455543 68899999965432 22344567777
Q ss_pred cccccCCCchh-----HHH----HHhhC--CcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP-----VKE----ILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~-----v~~----iL~~~--~~~~L~~l~ki~~~ 368 (596)
.+..+.|.... +.. +...+ ..+.+++.||+|..
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 76666554321 111 22222 34667788998864
No 94
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.51 E-value=1.6e-07 Score=89.17 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=62.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
..++|+|+|.+|||||||+|+|++............+.....+.++ ..+.|+||||... .......+++++.+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~~d~i 102 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHMRWGEGF 102 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhhccCCEE
Confidence 4689999999999999999999987653322111112222233443 3588999999875 23344566777766
Q ss_pred cccCCCchh-----H----HHHHhh---CCcchhhhhhCCCC
Q 007611 338 EKLDDPVGP-----V----KEILNR---CPANLLISLYKLPS 367 (596)
Q Consensus 338 ~~l~D~~~~-----v----~~iL~~---~~~~~L~~l~ki~~ 367 (596)
..+-|...+ + ..+... ...+.+++.||+|.
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 655554321 1 122221 23456777788775
No 95
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.51 E-value=3.3e-07 Score=82.89 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=61.0
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
.++|+|+|.+|||||||+|+|.+.... ...++++.. ...+.++ ..+.|+||||.... .......+..++.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---~~~~~~~~~~~~~ 77 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---SAMRDQYMRTGEG 77 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC---CHHHHHHHHHCSE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhh---hHHHHHhhccCCE
Confidence 478999999999999999999987643 223333322 2233333 24789999996543 2233345566666
Q ss_pred ccccCCCchh-----HH----HHHhhC---CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC---PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~---~~~~L~~l~ki~~~ 368 (596)
+..+.|.... +. .+...+ ..+.+++.||+|..
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 5554443221 11 122222 35667788888864
No 96
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.51 E-value=1.1e-07 Score=90.38 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=67.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++.... ...++.|+|.....+.++ ..+.|+||||..... ......+++++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~d~ 83 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR---TITTAYYRGAMG 83 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH---HHHHTTGGGCSE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc---chHHHhhcCCCE
Confidence 4589999999999999999999987743 234455666655555553 368999999975321 122334566666
Q ss_pred ccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~~ 368 (596)
+..+.|.... +. .+...+ ..+.+++.||+|..
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 6655554321 11 122222 34677788998864
No 97
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.50 E-value=9.9e-08 Score=90.78 Aligned_cols=105 Identities=23% Similarity=0.223 Sum_probs=62.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++..... ..++.|++.....+.++. .+.|+||||........ ...+++++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---~~~~~~~d~ 83 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG---VAFYRGADC 83 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC---CGGGTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH---HHHHhCCcE
Confidence 46899999999999999999999877432 122223333333444443 68999999975432211 123456666
Q ss_pred ccccCCCchh-----H----HHHHhhC------CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----V----KEILNRC------PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v----~~iL~~~------~~~~L~~l~ki~~~ 368 (596)
+..+.|.... + ..++... ..+.+++.||+|..
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 5555443221 1 1222222 33567778888864
No 98
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.50 E-value=1.4e-07 Score=87.68 Aligned_cols=102 Identities=19% Similarity=0.084 Sum_probs=62.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++... +...+++|.... .+.++. .+.|+||||.... .......+.+++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~~~~d 91 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AAIRDNYFRSGE 91 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---HHHHHHHHHHCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc---HHHHHHHhccCC
Confidence 458999999999999999999998764 233444443322 233433 6889999996532 122334566666
Q ss_pred cccccCCCchh-----H----HHHHhhC---CcchhhhhhCCCC
Q 007611 336 RIEKLDDPVGP-----V----KEILNRC---PANLLISLYKLPS 367 (596)
Q Consensus 336 ~i~~l~D~~~~-----v----~~iL~~~---~~~~L~~l~ki~~ 367 (596)
.+..+.|...+ + ..++..+ ..+.+++.||+|.
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 66555444321 1 1233322 3456677788774
No 99
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.49 E-value=1e-07 Score=86.88 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=62.3
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLD 341 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~ 341 (596)
++|+|+|.+|||||||+|+|++.......++.|.+ ...+.. +..+.|+||||.... .......+.+++.+..+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~---~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDKI---RPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECSSCEEEEEECCCCGGG---HHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEECCEEEEEEEcCCChhh---HHHHHHHhccCCEEEEEE
Confidence 47999999999999999999987654333333322 222232 457899999998532 122234567777666554
Q ss_pred CCch-----hHH----HHHhh---CCcchhhhhhCCCCCC
Q 007611 342 DPVG-----PVK----EILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 342 D~~~-----~v~----~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
|... .+. .++.. ...+.+++.||+|...
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 4322 122 22221 1346677888888643
No 100
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.49 E-value=4.1e-07 Score=84.72 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=61.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++.... ...+.++.. ...+.++. .+.|+||||...... .....+++++
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~~d 91 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA---MREQYMRTGD 91 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS---SHHHHHHHCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH---HHHHHHhcCC
Confidence 4689999999999999999999976532 223333222 22233333 356799999754322 2234566666
Q ss_pred cccccCCCchh-----HH----HHHh---hCCcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP-----VK----EILN---RCPANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~-----v~----~iL~---~~~~~~L~~l~ki~~~ 368 (596)
.+..+.|.... +. .++. ....+.+++.||+|..
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 66555443321 21 2222 2334667788898854
No 101
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.49 E-value=1e-07 Score=87.09 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=60.8
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
.++|+|+|.+|||||||+|+|++.... ....|.+|.. ...+.++. .+.|+||||....... ....+.+++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---~~~~~~~~d~ 78 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI---TTAYYRGAMG 78 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC---CHHHHTTEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh---HHHHhccCCE
Confidence 478999999999999999999987642 2333444433 33444443 6889999997543222 2335666666
Q ss_pred ccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPS 367 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~ 367 (596)
+..+.|.... +. .+...+ ..+.+++.||+|.
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 79 IILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120 (170)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 6655554321 11 222333 3466778888886
No 102
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.49 E-value=2.1e-07 Score=88.27 Aligned_cols=103 Identities=18% Similarity=0.079 Sum_probs=63.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.+|||||||+|+|++... +..++++|... ..+.++. .+.|+||||..... ......+.+++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~ 87 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AIRDNYFRSGE 87 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HHHHHHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH---HHHHHHHhhCC
Confidence 468999999999999999999998774 33444444332 2334443 68899999965321 22234455666
Q ss_pred cccccCCCchh-----H----HHHHhhC---CcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP-----V----KEILNRC---PANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~-----v----~~iL~~~---~~~~L~~l~ki~~~ 368 (596)
.+..+-|.... + ..++..+ ..+.+++.|++|..
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 55544443221 1 1233333 34667788888853
No 103
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.48 E-value=2.1e-07 Score=106.96 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=36.1
Q ss_pred cccCHHHHHHHHHhhh---hccc---cccceEEEeecCCCCCcchHHHhhhccccccccCC
Q 007611 239 DCLGAETLIKLLKNYS---RSHE---IKKSITVGVIGLPNVGKSSLINSLKRCHVANVGAT 293 (596)
Q Consensus 239 ~~~G~~~Ll~lLk~y~---~~~~---~k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~ 293 (596)
...|.+.|+.++..+. +.-+ .-.-.+|+|||.+|+|||||||+|+|..+.+++..
T Consensus 22 ~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g 82 (772)
T 3zvr_A 22 GNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG 82 (772)
T ss_dssp ---CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS
T ss_pred ccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc
Confidence 3455566665554432 1111 12457999999999999999999999887665543
No 104
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.47 E-value=1.1e-07 Score=91.52 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=67.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEEEEeC----CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~v~l~----~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.+|||||||+|+|++... .....+.|++.....+... ..+.|+||||........ ...+.+++
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---~~~~~~~d 86 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK---DVYYIGAS 86 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC---HHHHTTCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH---HHHhhcCC
Confidence 468999999999999999999997653 3345666766655554442 348999999986543222 23456666
Q ss_pred cccccCCCchh-----H----HHHHhhC--CcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP-----V----KEILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~-----v----~~iL~~~--~~~~L~~l~ki~~~ 368 (596)
.+..+.|.... + ..+...+ ..+.+++.||+|..
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 66555444321 1 1222222 34677788998864
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.47 E-value=5.5e-08 Score=93.09 Aligned_cols=103 Identities=20% Similarity=0.173 Sum_probs=60.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
+.++|+|||.+|||||||+|+|.+.......++.|.|.. .+.+ +..+.++||||....... ....+++++.+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQARRV---WKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC----CCG---GGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcHhhHHH---HHHHHhcCCEEEE
Confidence 468999999999999999999999887666667777643 3333 357899999997543221 1224556666655
Q ss_pred cCCCchh-----H----HHHHhh---CCcchhhhhhCCCCC
Q 007611 340 LDDPVGP-----V----KEILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 340 l~D~~~~-----v----~~iL~~---~~~~~L~~l~ki~~~ 368 (596)
+.|.... + ..++.. ...+.+++.||+|..
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 5443221 1 123322 234667778888764
No 106
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.47 E-value=2.3e-07 Score=88.59 Aligned_cols=104 Identities=22% Similarity=0.185 Sum_probs=63.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCC--CceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP--GLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P--gtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.+|||||||+|+|++.... ....| |++.....+.++. .+.|+||||....... ....+++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d 82 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI---TSSYYRGSH 82 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC---CGGGGTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH---HHHhccCCC
Confidence 4589999999999999999999987643 22233 3333334455543 6899999997543221 122456666
Q ss_pred cccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~~ 368 (596)
.+..+.|...+ +. .+.... ..+.+++.|++|..
T Consensus 83 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 83 GIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 66555554321 11 122222 23567778888864
No 107
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.46 E-value=2.1e-07 Score=85.76 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=55.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++.... ...++.|++.....+.++. .+.|+||||.... .......+.+++.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF---RAVTRSYYRGAAG 90 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT---CHHHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh---hhhHHHHhccCCE
Confidence 4689999999999999999999987743 2334455555555555543 6899999996532 2334456677776
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+.|.
T Consensus 91 ~i~v~d~ 97 (179)
T 1z0f_A 91 ALMVYDI 97 (179)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 6665554
No 108
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.46 E-value=1.1e-07 Score=89.75 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=66.0
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
+..++|+|||.+|||||||+|+|++.... ...++.|.+.. .+.. +..+.|+||||...... .....+++++.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~i 94 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRS---MWERYCRGVSAI 94 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHT---THHHHHTTCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHH---HHHHHHccCCEE
Confidence 35689999999999999999999987653 23444454432 2222 45789999999753211 123456777776
Q ss_pred cccCCCch-----hH----HHHHhh---CCcchhhhhhCCCCCC
Q 007611 338 EKLDDPVG-----PV----KEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 338 ~~l~D~~~-----~v----~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
..+.|... .+ ..++.. ...+.+++.||+|...
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 66555421 11 123332 3346777889988654
No 109
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.46 E-value=1.5e-07 Score=89.80 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=60.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEe---CCcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.+|||||||+|+|++.... ...+.++... ..+.+ ...+.|+||||....... ....+++++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d 97 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL---PYSFIIGVH 97 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC---CGGGTTTCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH---HHHHHhcCC
Confidence 5689999999999999999999987754 2223333222 22222 235789999997644221 122455566
Q ss_pred cccccCCCch-----hHHHH----Hhh---CCcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVG-----PVKEI----LNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~-----~v~~i----L~~---~~~~~L~~l~ki~~~ 368 (596)
.+..+.|... .+..+ +.. ...+.+++.||+|..
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 5555544331 12222 221 134667778888853
No 110
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.45 E-value=1.8e-07 Score=87.39 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=63.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceee-eEEEEeC------------CcEEEEecCCCccCCCCChH
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRS-MQEVQLD------------KNVKLLDCPGVVMLKSGEND 326 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~-~q~v~l~------------~~i~LiDTPGI~~~~~~~~~ 326 (596)
..++|+|+|.+|||||||+|+|++.... ...++.|.+.. ...+..+ ..+.|+||||.... ...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~ 86 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF---RSL 86 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG---HHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH---HHH
Confidence 4689999999999999999999986642 12233333332 2233332 26899999998532 122
Q ss_pred HHHHhhccccccccCCCchh-----HH----HHHhhC---CcchhhhhhCCCCC
Q 007611 327 ASIALRNCKRIEKLDDPVGP-----VK----EILNRC---PANLLISLYKLPSF 368 (596)
Q Consensus 327 ~~~~L~~~~~i~~l~D~~~~-----v~----~iL~~~---~~~~L~~l~ki~~~ 368 (596)
....+++++.+..+.|...+ +. .+...+ ..+.+++.||+|..
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 33456677766666554321 11 222222 34667778888853
No 111
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.45 E-value=1.4e-07 Score=87.17 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=63.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEeC---CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD---KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++... +...++||..... +.++ ..+.|+||||...... .....+.+++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~~~~~~~~~d 82 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA---MREQYMRAGH 82 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC---CHHHHHHHCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH---HHHHHHhhCC
Confidence 458999999999999999999998753 4455555544322 3333 3688999999764322 1233455666
Q ss_pred cccccCCCchh-----HH----HHHhh---CCcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP-----VK----EILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~-----v~----~iL~~---~~~~~L~~l~ki~~~ 368 (596)
.+..+-|.... +. .++.. ...+.+++.||+|..
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 55554443221 11 22222 234667777888753
No 112
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.43 E-value=1.9e-07 Score=87.44 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=63.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
..++|+|+|.+|||||||+|+|++.......++.|++.....+ -+..+.|+||||....... ....+.+++.+..+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~---~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSLRSY---WRNYFESTDGLIWV 92 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEE-TTEEEEEEEECCSHHHHTT---GGGGCTTCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEE-CCEEEEEEECCCCHhHHHH---HHHHhcCCCEEEEE
Confidence 5789999999999999999999987755555566655432222 1457899999998532111 11234455555444
Q ss_pred CCCch-----hH----HHHHhh---CCcchhhhhhCCCCCC
Q 007611 341 DDPVG-----PV----KEILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 341 ~D~~~-----~v----~~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
.|... .+ ..++.. ...+.+++.||+|...
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 43321 11 122222 2345667778877543
No 113
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.41 E-value=2.6e-07 Score=84.23 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=55.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++..... ..++.|++.....+.++ ..+.|+||||..... ......+.+++.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~~~~~~~~d~ 81 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH---SLAPMYYRGAQA 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GGHHHHHTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh---hhhHHhccCCCE
Confidence 46899999999999999999999776433 34566777666666553 368899999965321 223445666666
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+.|.
T Consensus 82 ~i~v~d~ 88 (170)
T 1r2q_A 82 AIVVYDI 88 (170)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 6555544
No 114
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.41 E-value=1.5e-07 Score=89.53 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=61.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
+.++|+|+|.+|||||||+|+|++.......++.|.+. ..+.. +..+.|+||||...... .....+.+++.+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d~iil 102 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNICFTVWDVGGQDKIRP---LWRHYFQNTQGLIF 102 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEE--EEEEETTEEEEEEECC-----CT---THHHHHHTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeE--EEEEECCEEEEEEECCCCHhHHH---HHHHHhccCCEEEE
Confidence 56899999999999999999999876543333333221 22222 35789999999864321 23345667776665
Q ss_pred cCCCch-----hHH----HHHhh---CCcchhhhhhCCCCCC
Q 007611 340 LDDPVG-----PVK----EILNR---CPANLLISLYKLPSFD 369 (596)
Q Consensus 340 l~D~~~-----~v~----~iL~~---~~~~~L~~l~ki~~~~ 369 (596)
+.|... .+. .++.. ...+.+++.||+|...
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 544322 122 22222 1446777889988643
No 115
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.41 E-value=2.7e-07 Score=88.66 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=69.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeC----CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~----~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++... +..++.++.....+.++ ..+.|+||||...... ......+++++.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 81 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF--QLLDRFKSSARA 81 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHH--HHHHHHGGGEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEEEEecCCCccEEEEEECCCChhHHH--HHHHHHHhhCCE
Confidence 468999999999999999999998763 33445555554445554 3589999999863210 012234667777
Q ss_pred ccccCCCchh---HHH-------HHh-----hCCcchhhhhhCCCCCC--CHHHHHHHHH
Q 007611 337 IEKLDDPVGP---VKE-------ILN-----RCPANLLISLYKLPSFD--SVDDFLQKVA 379 (596)
Q Consensus 337 i~~l~D~~~~---v~~-------iL~-----~~~~~~L~~l~ki~~~~--~~~e~L~~la 379 (596)
+..+.|.... ... ++. ....+.+++.||+|... ..+.+...+.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~ 141 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLE 141 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHH
Confidence 6666554331 111 111 12346778889998753 3344444333
No 116
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.41 E-value=1.2e-07 Score=105.32 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=77.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc---------------c------cCCCCceeeeEEEEe---CCcEEEEecCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN---------------V------GATPGLTRSMQEVQL---DKNVKLLDCPG 316 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~---------------v------s~~PgtTr~~q~v~l---~~~i~LiDTPG 316 (596)
...+|+|||+||||||||+|+|+....+. + ...+|+|.....+.+ +..+.|+||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 35789999999999999999997221100 1 112466655443332 45799999999
Q ss_pred CccCCCCChHHHHHhhccccccccCCCchh-------HHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 317 VVMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 317 I~~~~~~~~~~~~~L~~~~~i~~l~D~~~~-------v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
.... ...+...++.++.+..+.|.... +...+.....+.++++||+|... +..+.+..+....+
T Consensus 92 ~~df---~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~ 163 (528)
T 3tr5_A 92 HADF---TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILR 163 (528)
T ss_dssp STTC---CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred chhH---HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhC
Confidence 8643 34566678888887777665431 22334445667888899999753 44555665655544
No 117
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.40 E-value=9.4e-08 Score=107.94 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=68.0
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccC------------------------------CCCceeeeEEEEe---C
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGA------------------------------TPGLTRSMQEVQL---D 306 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~------------------------------~PgtTr~~q~v~l---~ 306 (596)
+..++|+|||.||||||||+|+|++........ .+|+|.+.....+ +
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 467999999999999999999999764322111 2688887654443 4
Q ss_pred CcEEEEecCCCccCCCCChHHHHHhhccccccccCCCch-----------hH---HHHHhhCCc-chhhhhhCCCCCC
Q 007611 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG-----------PV---KEILNRCPA-NLLISLYKLPSFD 369 (596)
Q Consensus 307 ~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~-----------~v---~~iL~~~~~-~~L~~l~ki~~~~ 369 (596)
.++.|+||||...- .......+..++.+..+.|... .. ..++..++. +.++++||+|...
T Consensus 245 ~~~~iiDTPG~e~f---~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 245 ANFTIVDAPGHRDF---VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CEEEEEECCSSSCH---HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred ceEEEEECCCCccc---HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 58999999998431 1112223455666655555432 11 123334443 4677789999764
No 118
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.39 E-value=2.3e-07 Score=87.59 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=65.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++...... .++.|++.....+.++. .+.|+||||....... ....+++++.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d~ 96 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI---TRSYYRGAAG 96 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC---CHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh---HHHHhccCCE
Confidence 468999999999999999999998775433 23345555555565544 6899999997543221 2345667776
Q ss_pred ccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~~ 368 (596)
+..+.|.... +. .+...+ ..+.+++.||+|..
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 6655554321 11 222222 34567777888863
No 119
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.39 E-value=3e-07 Score=84.89 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=41.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeCC---cEEEEecCCCcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~ 319 (596)
..++|+|+|.+|||||||+|+|++.... ...++.|.+.....+.++. .+.|+||||...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 4689999999999999999999987642 2233344444444455554 789999999643
No 120
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.38 E-value=1.5e-07 Score=89.64 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=60.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCce--eeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtT--r~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||||+|++..... ...|++| .....+.++. .+.|+||||....... ....+++++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d 107 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI---TSSYYRGAH 107 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC---SCC--CCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH---HHHHhhcCC
Confidence 46899999999999999999999876422 2223333 3344444443 6889999996543221 112456666
Q ss_pred cccccCCCchh-----HHHH---HhhC---CcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP-----VKEI---LNRC---PANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~-----v~~i---L~~~---~~~~L~~l~ki~~~ 368 (596)
.+..+.|.... +..+ +... ..+.+++.||+|..
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 66655554321 1222 2221 34667778888854
No 121
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.38 E-value=8.2e-08 Score=108.04 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=31.7
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcccccccc------------------------------CCCCceeeeEEEEe---C
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVG------------------------------ATPGLTRSMQEVQL---D 306 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs------------------------------~~PgtTr~~q~v~l---~ 306 (596)
+..++|+|||++|+|||||+|+|++...+.+. ..+|+|.+.....+ +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 45689999999999999999999754322221 15688888766544 3
Q ss_pred CcEEEEecCCCcc
Q 007611 307 KNVKLLDCPGVVM 319 (596)
Q Consensus 307 ~~i~LiDTPGI~~ 319 (596)
..+.|+||||...
T Consensus 255 ~~i~iiDTPGh~~ 267 (592)
T 3mca_A 255 KIYEIGDAPGHRD 267 (592)
T ss_dssp ----CCEEESSSE
T ss_pred eEEEEEECCChHH
Confidence 6799999999753
No 122
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.38 E-value=1.6e-07 Score=102.97 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=67.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
..++|+|||.||||||||+|+|++.......++.|++... +.. +..+.|+||||...... .....+++++.+..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VTYKNVKFNVWDVGGQDKIRP---LWRHYYTGTQGLIF 395 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE--EESSSCEEEEEEECCCGGGSG---GGGGGGTTCCEEEE
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEE--EEeCCEEEEEEECCCcHHHHH---HHHHHhccCCEEEE
Confidence 4689999999999999999999998855444444544332 222 45799999999654322 12335667777666
Q ss_pred cCCCchh-----H----HHHHhh---CCcchhhhhhCCCCC
Q 007611 340 LDDPVGP-----V----KEILNR---CPANLLISLYKLPSF 368 (596)
Q Consensus 340 l~D~~~~-----v----~~iL~~---~~~~~L~~l~ki~~~ 368 (596)
+.|.... + ..++.. ...+.+++.||+|..
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 6554321 1 223322 245678888999864
No 123
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.36 E-value=4.1e-07 Score=88.45 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=50.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++...... .++.|++.....+.++. .+.|+||||....... ....+++++.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d~ 88 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI---TSAYYRGAVG 88 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC---CGGGTTTCCE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh---HHHHhccCCE
Confidence 458999999999999999999998775432 23334444444455543 7899999997543221 1224556665
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+.|.
T Consensus 89 vilV~D~ 95 (223)
T 3cpj_B 89 ALIVYDI 95 (223)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 5555554
No 124
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.35 E-value=1.8e-07 Score=102.56 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=68.4
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcccc------------------------------ccccCCCCceeeeEEEEe---C
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHV------------------------------ANVGATPGLTRSMQEVQL---D 306 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv------------------------------~~vs~~PgtTr~~q~v~l---~ 306 (596)
+..++|+|||.+|+|||||+|+|++... ......+|+|.+...+.+ +
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4578999999999999999999986511 112234688877665544 4
Q ss_pred CcEEEEecCCCccCCCCChHHHHHhhccccccccCCCch-----------hHH---HHHhhCC-cchhhhhhCCCCCC
Q 007611 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG-----------PVK---EILNRCP-ANLLISLYKLPSFD 369 (596)
Q Consensus 307 ~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~-----------~v~---~iL~~~~-~~~L~~l~ki~~~~ 369 (596)
.++.|+||||...- .......+..++.+..+.|... ... .++...+ .+.++++||+|...
T Consensus 111 ~~~~iiDTPG~~~f---~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 ANFTIVDAPGHRDF---VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp CEEEEECCCCCGGG---HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHH---HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 58999999998532 2334455677777665555432 112 2333444 34677889998654
No 125
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.35 E-value=7.4e-07 Score=92.03 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=80.1
Q ss_pred ccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHH-HHHHHHhCCCCceeEEeeccCCC-CHHHHHHHHHHHHhcCC
Q 007611 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDM-EKMVMKAGPDKHLVLLLNKIDLV-PRESVEKWLKYLREELP 206 (596)
Q Consensus 129 ~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~l-e~~i~~~~~~K~lILVLNKiDLV-p~e~l~~Wl~yLr~~~p 206 (596)
....+.|.......+..+|+||+|+|+.++.+.....+ .+.+.. .+.|+|+|+||+|++ +...+..++..+.+.++
T Consensus 76 ~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 76 DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP 153 (308)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc
Confidence 45667888899999999999999999999877655554 444443 368999999999999 78888888888887762
Q ss_pred -eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 207 -AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 207 -tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
...+. .+|+..+.|++.|++.|..+.+.
T Consensus 154 ~~~~i~----------------------~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 154 ELTEIV----------------------PISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp TCCCEE----------------------ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred CCCeEE----------------------EEeCCCCCCHHHHHHHHHHhCcc
Confidence 22221 34556778999999999887654
No 126
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.35 E-value=3.4e-07 Score=104.81 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=74.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-----cc------cC------CCCceeeeEEEEe---CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-----NV------GA------TPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-----~v------s~------~PgtTr~~q~v~l---~~~i~LiDTPGI~~~ 320 (596)
...+|+|||.+|+|||||+|+|+..... .| .+ .+|+|.......+ +.++.|+||||....
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4578999999999999999999952211 11 11 3566665444332 457999999999743
Q ss_pred CCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 321 KSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
...+...++.|+.+..+.|... .+...+.....+.++++||+|... +....+..+....+
T Consensus 89 ---~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~ 156 (693)
T 2xex_A 89 ---TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQ 156 (693)
T ss_dssp ---CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhC
Confidence 3456667888888777766532 122334445667888899999764 34555555555443
No 127
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.34 E-value=4.7e-07 Score=83.54 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=50.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++.... ....|++|.+. ..+.++. .+.|+||||........ ...+.+++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~~~~d 83 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT---STYYRGTH 83 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC---GGGGTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH---HHHhccCC
Confidence 4589999999999999999999988753 44455555443 3344443 68899999965432211 12345555
Q ss_pred cccccCCC
Q 007611 336 RIEKLDDP 343 (596)
Q Consensus 336 ~i~~l~D~ 343 (596)
.+..+.|.
T Consensus 84 ~~i~v~d~ 91 (181)
T 3tw8_B 84 GVIVVYDV 91 (181)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55544443
No 128
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.34 E-value=3e-07 Score=96.76 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.3
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANV 290 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~v 290 (596)
.+|+|||.+|||||||+|+|+|......
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~ 62 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPR 62 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCC
Confidence 4899999999999999999999765333
No 129
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.32 E-value=5.2e-07 Score=83.33 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=52.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeC----CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~----~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.||||||||+|+|++.... ...++.|.......+.++ ..+.|+||||..... ......+++++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~~~~d 81 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG---KMLDKYIYGAQ 81 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC---TTHHHHHTTCS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc---chhhHHHhhCC
Confidence 4689999999999999999999987642 122333333333344443 368999999975432 22344567777
Q ss_pred cccccCCC
Q 007611 336 RIEKLDDP 343 (596)
Q Consensus 336 ~i~~l~D~ 343 (596)
.+..+-|.
T Consensus 82 ~~i~v~d~ 89 (178)
T 2hxs_A 82 GVLLVYDI 89 (178)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 76666554
No 130
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.32 E-value=6.2e-07 Score=82.04 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=39.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~ 318 (596)
..++|+|+|.+|||||||+|+|++..... ..++.|.+.....+.++. .+.|+||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 46899999999999999999999876421 222333333333444443 57888999964
No 131
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.30 E-value=6.7e-07 Score=82.34 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=51.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++.... ....|.++.+. ..+.++. .+.|+||||...... .....+.+++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~~~~~~~~~d 88 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDST 88 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---GSHHHHHTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH---HHHHHhcCCC
Confidence 3589999999999999999999977643 23344444333 3344443 689999999654321 1233456666
Q ss_pred cccccCCC
Q 007611 336 RIEKLDDP 343 (596)
Q Consensus 336 ~i~~l~D~ 343 (596)
.+..+.|.
T Consensus 89 ~~i~v~d~ 96 (179)
T 2y8e_A 89 VAVVVYDI 96 (179)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 66555443
No 132
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.30 E-value=6.4e-07 Score=83.02 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=51.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
..++|+|||.+|||||||+|.|++.......++.|.+. ...+.++ ..+.|+||||... ...+++++.+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~d~~ 76 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD--------AKFSGWADAV 76 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC--------HHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch--------hHHHHhCCEE
Confidence 46899999999999999999999887654444445332 2334443 2578899999754 2356667666
Q ss_pred cccCCC
Q 007611 338 EKLDDP 343 (596)
Q Consensus 338 ~~l~D~ 343 (596)
..+-|.
T Consensus 77 ilv~D~ 82 (178)
T 2iwr_A 77 IFVFSL 82 (178)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 555443
No 133
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.30 E-value=1e-06 Score=82.46 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=63.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCC-------CCceeeeEEE-----EeC---CcEEEEecCCCccCCCCCh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGAT-------PGLTRSMQEV-----QLD---KNVKLLDCPGVVMLKSGEN 325 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~-------PgtTr~~q~v-----~l~---~~i~LiDTPGI~~~~~~~~ 325 (596)
..++|+|||.||||||||+|.|.+.......+. ...|...... .++ ..+.|+||||.... ..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---~~ 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY---NA 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC---SH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH---HH
Confidence 468999999999999999999988654332111 1223322221 111 25889999997532 23
Q ss_pred HHHHHhhccccccccCCCchh--------HHH---HHhh-----CCcchhhhhhCCCCC
Q 007611 326 DASIALRNCKRIEKLDDPVGP--------VKE---ILNR-----CPANLLISLYKLPSF 368 (596)
Q Consensus 326 ~~~~~L~~~~~i~~l~D~~~~--------v~~---iL~~-----~~~~~L~~l~ki~~~ 368 (596)
.....+++++.+..+.|...+ +.. .+.. ...+.+++.||+|..
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 344567788877777665421 112 2222 234677778888854
No 134
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.29 E-value=4.2e-07 Score=83.03 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=46.9
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccc--cccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~--~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
.++|+|+|.+|||||||+|+|++.... .....+.+++. .+..+ ..+.|+||||..... ......+.+++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~~~~~~ 77 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ--VISCDKSICTLQITDTTGSHQFP---AMQRLSISKGHA 77 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE--EEEETTEEEEEEEEECCSCSSCH---HHHHHHHHHCSE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE--EEEECCEEEEEEEEECCCchhhH---HHHHHhcccCCE
Confidence 478999999999999999999986542 11222222322 22222 258899999975321 223344556665
Q ss_pred ccccCC
Q 007611 337 IEKLDD 342 (596)
Q Consensus 337 i~~l~D 342 (596)
+..+.|
T Consensus 78 ~i~v~d 83 (172)
T 2erx_A 78 FILVYS 83 (172)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554444
No 135
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.29 E-value=5.5e-07 Score=82.43 Aligned_cols=104 Identities=11% Similarity=-0.008 Sum_probs=53.1
Q ss_pred eEEEeecCCCCCcchHHHhhhccccccccCCCC-ceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPG-LTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pg-tTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~ 338 (596)
++|+|+|.||||||||+|+|++.........+. .......+.++ ..+.++||||....... .....+++++.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~d~~i 80 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW--LQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC----------CHHHHHCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh--hhhhhhccCCEEE
Confidence 689999999999999999998765433332222 22222233343 36789999998654221 1112344555554
Q ss_pred ccCCCch-----h----HHHHHhhC---CcchhhhhhCCCCC
Q 007611 339 KLDDPVG-----P----VKEILNRC---PANLLISLYKLPSF 368 (596)
Q Consensus 339 ~l~D~~~-----~----v~~iL~~~---~~~~L~~l~ki~~~ 368 (596)
.+-|... . +..++..+ ..+.+++.||+|..
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 4433321 1 12333333 34677778888853
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.29 E-value=6.3e-07 Score=96.64 Aligned_cols=108 Identities=24% Similarity=0.303 Sum_probs=68.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEE--eC--CcEEEEecCCCccCCC----CChHHHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--LD--KNVKLLDCPGVVMLKS----GENDASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~--l~--~~i~LiDTPGI~~~~~----~~~~~~~~L~ 332 (596)
..-.|+|||.||||||||||+|++... .++.+|++|..+.... ++ ..+.++||||++.... ........+.
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 345699999999999999999999875 6788999998766533 33 5789999999975311 1122233344
Q ss_pred ccccccccCCCc-hhH---H----HHHhh----CCcchhhhhhCCCCCC
Q 007611 333 NCKRIEKLDDPV-GPV---K----EILNR----CPANLLISLYKLPSFD 369 (596)
Q Consensus 333 ~~~~i~~l~D~~-~~v---~----~iL~~----~~~~~L~~l~ki~~~~ 369 (596)
.|+.+.++.|.. .++ . +++.. +..+.++++|++|...
T Consensus 235 ra~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 235 RTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp SSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 455554444331 122 1 11111 2346677778887653
No 137
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.29 E-value=7.1e-07 Score=85.40 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=62.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++..... ..++.|.+.....+.++. .+.|+||||.... .......+++++.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~d~ 104 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF---RTITQSYYRSANG 104 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGG---HHHHHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH---HHHHHHHHhhCCE
Confidence 46899999999999999999999876421 122222222233444443 7899999997532 1223445677777
Q ss_pred ccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCCC
Q 007611 337 IEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~~ 368 (596)
+..+-|.... +. .+...+ ..+.+++.||+|..
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 7666554321 11 222222 24567777888864
No 138
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.29 E-value=7.2e-07 Score=84.51 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=51.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++..... ..++.|++.....+.++. .+.|+||||.... .......+++++.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~~~~~~~~~d~ 101 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---NSITSAYYRSAKG 101 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG---HHHHHHHHHHCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH---HHHHHHHhcCCCE
Confidence 46899999999999999999999876532 234445555555555543 6899999996532 1223445666766
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+.|.
T Consensus 102 iilV~D~ 108 (192)
T 2il1_A 102 IILVYDI 108 (192)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 6655544
No 139
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.26 E-value=6.3e-07 Score=86.28 Aligned_cols=102 Identities=25% Similarity=0.271 Sum_probs=61.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccc--cCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhc----c
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV--GATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRN----C 334 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~v--s~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~----~ 334 (596)
..++|+|+|.+|||||||+|+|++...... +..|+++... ....+.|+||||..... ......++. +
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLR---YKLSDYLKTRAKFV 83 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGGGT---HHHHHHHHHHGGGE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHHHH---HHHHHHHHhccccC
Confidence 468899999999999999999998764222 2334443322 34578999999996542 222223333 4
Q ss_pred ccccccCCCc------hhH----HHHHhh------CCcchhhhhhCCCCCC
Q 007611 335 KRIEKLDDPV------GPV----KEILNR------CPANLLISLYKLPSFD 369 (596)
Q Consensus 335 ~~i~~l~D~~------~~v----~~iL~~------~~~~~L~~l~ki~~~~ 369 (596)
+.+..+.|.. ..+ ..++.. ...+.+++.||+|...
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 4444433332 112 223322 2346777889998754
No 140
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=3.6e-07 Score=87.69 Aligned_cols=106 Identities=14% Similarity=0.188 Sum_probs=59.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee-EEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM-QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~-q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++...... ..|.++... ..+.++. .+.|+||||....... ....+.+++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d~ 99 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL---RPLSYPDTDV 99 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT---GGGGCTTCCE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH---HHhhcCCCCE
Confidence 357899999999999999999998765322 112222221 2234433 6889999997543211 1224455665
Q ss_pred ccccCCCchh-----H----HHHHhh-C-CcchhhhhhCCCCCCC
Q 007611 337 IEKLDDPVGP-----V----KEILNR-C-PANLLISLYKLPSFDS 370 (596)
Q Consensus 337 i~~l~D~~~~-----v----~~iL~~-~-~~~~L~~l~ki~~~~~ 370 (596)
+..+-|.... + ...+.. + ..+.+++.||+|....
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 5554333211 1 112222 2 3466777888876543
No 141
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.25 E-value=1.1e-07 Score=105.56 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=68.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
++.+|+|+|.+|+|||||+|+|++.... ....||+|.+...+.+ +..+.|+||||........ ...+..++.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~---~~~~~~aD~ 78 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR---ARGTQVTDI 78 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB---BSSSBSBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH---HHHHccCCE
Confidence 5678999999999999999999988764 4467899988655433 3479999999964322111 112344554
Q ss_pred ccccCCCc---hh----HHHHHhhCCcchhhhhhCCCCC
Q 007611 337 IEKLDDPV---GP----VKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 337 i~~l~D~~---~~----v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
+..+.|.. .+ ....+.....+.++++||+|..
T Consensus 79 vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 79 VILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp CEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred EEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 44443332 11 1223444455778888998854
No 142
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.25 E-value=1.1e-06 Score=82.53 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=44.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.+|||||||+|+|++.... ...+++|.... .+.++. .+.|+||||...... .....+..++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d 94 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---MRDQYMRTGE 94 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------CTTCS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH---HHHHhhCcCC
Confidence 4589999999999999999999987642 33444443322 233332 488999999753211 1223455555
Q ss_pred cccccCC
Q 007611 336 RIEKLDD 342 (596)
Q Consensus 336 ~i~~l~D 342 (596)
.+..+.|
T Consensus 95 ~~i~v~d 101 (190)
T 3con_A 95 GFLCVFA 101 (190)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5544433
No 143
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.25 E-value=6.1e-07 Score=85.29 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=62.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe----CCcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l----~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|.|.+............|.....+.+ ...+.|+||||...-..........+++++.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA 98 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence 568999999999999999999998643322211222222222222 2478999999975432211001345667776
Q ss_pred ccccCCCchh-------HHHHHhh----C-CcchhhhhhCCCCCC
Q 007611 337 IEKLDDPVGP-------VKEILNR----C-PANLLISLYKLPSFD 369 (596)
Q Consensus 337 i~~l~D~~~~-------v~~iL~~----~-~~~~L~~l~ki~~~~ 369 (596)
+..+-|.... +..++.. . ..+.+++.||+|...
T Consensus 99 ~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 99 LIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 6555443221 1122222 1 346677778888654
No 144
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.25 E-value=5.8e-07 Score=83.02 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=38.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeC----CcEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD----KNVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~----~~i~LiDTPGI~ 318 (596)
..++|+|+|.+|||||||+|+|++.... ...++.|++.....+.++ ..+.|+||||..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 4689999999999999999999987642 222333444444444443 268999999954
No 145
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.25 E-value=1.2e-06 Score=82.15 Aligned_cols=111 Identities=15% Similarity=-0.030 Sum_probs=56.3
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh--CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchh
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ 215 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~--~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~ 215 (596)
....+..+|+||+|+|+.+|.+... ......+... ..+.|+|||+||+||.++.........+...+....|
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----- 155 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFI----- 155 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEE-----
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEE-----
Confidence 4456788999999999988754222 1111222221 1368899999999996543222222222222322222
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcch
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSS 277 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSS 277 (596)
..|+..+.|++.|+..|.+....... .---+.+|+||||
T Consensus 156 ------------------~~Sa~~~~gi~~l~~~l~~~~~~~~~-----~~~~~~~n~gkSs 194 (195)
T 1x3s_A 156 ------------------EASAKTCDGVQCAFEELVEKIIQTPG-----LWESENQNSGPSS 194 (195)
T ss_dssp ------------------ECCTTTCTTHHHHHHHHHHHHHTSGG-----GTCC---------
T ss_pred ------------------EecCCCCCCHHHHHHHHHHHHHhhhh-----hhcccccCCCCCC
Confidence 23445677888888887765443211 1112556999998
No 146
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.25 E-value=3e-07 Score=98.48 Aligned_cols=107 Identities=16% Similarity=0.268 Sum_probs=68.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc--------cc---c-----cCCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV--------AN---V-----GATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv--------~~---v-----s~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
..++|+++|.+|+|||||+|+|++... .. + ...+|+|.....+.+ +..+.|+||||...-
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-
Confidence 468999999999999999999997310 00 0 014577776554443 367999999998642
Q ss_pred CCChHHHHHhhccccccccCCCch----hH---HHHHhhCCcc-hhhhhhCCCCCCC
Q 007611 322 SGENDASIALRNCKRIEKLDDPVG----PV---KEILNRCPAN-LLISLYKLPSFDS 370 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~----~v---~~iL~~~~~~-~L~~l~ki~~~~~ 370 (596)
.......+..++.+..+.|... .. ..++.....+ .++++||+|...+
T Consensus 89 --~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 89 --IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp --HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC
T ss_pred --HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCc
Confidence 1233445666776665554422 11 2234444555 4677899987644
No 147
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.25 E-value=4.9e-07 Score=100.28 Aligned_cols=126 Identities=16% Similarity=0.163 Sum_probs=72.3
Q ss_pred ccCHHHHHHHHHhhhhc-----c-ccccceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeE------EEEe-
Q 007611 240 CLGAETLIKLLKNYSRS-----H-EIKKSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQ------EVQL- 305 (596)
Q Consensus 240 ~~G~~~Ll~lLk~y~~~-----~-~~k~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q------~v~l- 305 (596)
..|...++..++..... . .....++|+|||.||||||||+|+|++.... ...++.|.+.... .+.+
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~ 92 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEND 92 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTC
T ss_pred HhCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeec
Confidence 35777888888776551 1 2345799999999999999999999987642 2223333332211 1111
Q ss_pred ----CCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchh--HH----HHHhhC-CcchhhhhhCCCCC
Q 007611 306 ----DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP--VK----EILNRC-PANLLISLYKLPSF 368 (596)
Q Consensus 306 ----~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~--v~----~iL~~~-~~~~L~~l~ki~~~ 368 (596)
+..+.|+||||....... ....++.++.+..+.|.... +. .+.... ..+.+++.|++|..
T Consensus 93 ~~~~~~~~~i~Dt~G~e~~~~~---~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 93 DELKECLFHFWDFGGQEIMHAS---HQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp STTTTCEEEEECCCSCCTTTTT---CHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred CCCceEEEEEEECCcHHHHHHH---HHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 346899999995433221 22346667766666554321 11 222222 25778888998864
No 148
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.25 E-value=9.3e-07 Score=82.37 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=50.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++..... ...|.++.. ...+.++. .+.|+||||..... ......+.+++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~d 84 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR---SVTRSYYRGAA 84 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH---HHHHTTSTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH---HHHHHHHhcCC
Confidence 46899999999999999999999876532 233444433 33444443 78899999965321 11223445566
Q ss_pred cccccCCC
Q 007611 336 RIEKLDDP 343 (596)
Q Consensus 336 ~i~~l~D~ 343 (596)
.+..+.|.
T Consensus 85 ~~i~v~d~ 92 (186)
T 2bme_A 85 GALLVYDI 92 (186)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55555443
No 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.23 E-value=1.2e-06 Score=82.80 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=58.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.+|||||||+|+|++... ...++.|+... ..+.++ ..+.|+||||...... ....+++++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~~~~~~ 93 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----CERYLNWAH 93 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----THHHHTTCS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----HHHHHhhCC
Confidence 468999999999999999999998763 23334444322 223333 2578899999865432 123566666
Q ss_pred cccccCCCch-----hHH----HHHhh-----CCcchhhhhhCCCC
Q 007611 336 RIEKLDDPVG-----PVK----EILNR-----CPANLLISLYKLPS 367 (596)
Q Consensus 336 ~i~~l~D~~~-----~v~----~iL~~-----~~~~~L~~l~ki~~ 367 (596)
.+..+-|... .+. .+... ...+.+++.||+|.
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 139 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcch
Confidence 5554443321 111 22222 24456677788774
No 150
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.23 E-value=7.4e-07 Score=92.91 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=60.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEe-CCcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
..++|+|||.+|||||||+|+|++...... .| |..... +.. +..+.|+||||-.... ......+++++.+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~ad~v 236 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIR---PLWRHYFQNTQGL 236 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-----C---CSHHHHHTTEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCCCHhHH---HHHHHHhccCCEE
Confidence 467999999999999999999998875333 23 333332 222 3478999999954322 1234456677766
Q ss_pred cccCCCc---h--hHH----HHHhhC---CcchhhhhhCCCCCC
Q 007611 338 EKLDDPV---G--PVK----EILNRC---PANLLISLYKLPSFD 369 (596)
Q Consensus 338 ~~l~D~~---~--~v~----~iL~~~---~~~~L~~l~ki~~~~ 369 (596)
..+.|.. . .+. .++... ..+.+++.||+|...
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 6554432 1 122 233322 346777889998653
No 151
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.22 E-value=2.2e-06 Score=88.34 Aligned_cols=105 Identities=17% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCccchHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHH-HHHHHHHHHhcC
Q 007611 127 NRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES-VEKWLKYLREEL 205 (596)
Q Consensus 127 ~~~~~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~-l~~Wl~yLr~~~ 205 (596)
+.+...+.|....+..+..+|+||+|+|+.++++.....+.+.+....++.|+|+|+||+||++... +..++..+ +
T Consensus 68 ~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~ 144 (301)
T 1wf3_A 68 PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---L 144 (301)
T ss_dssp CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---S
T ss_pred hhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---c
Confidence 3445566788888999999999999999999876554445455544333789999999999997655 55555444 2
Q ss_pred CeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 206 PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 206 ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
+...+. ++|+..+.|.+.|++.|..+.+.
T Consensus 145 ~~~~~~----------------------~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 145 PEAEPR----------------------MLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TTSEEE----------------------ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CcCcEE----------------------EEeCCCCCCHHHHHHHHHHhccc
Confidence 221221 34556677889999999876543
No 152
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.53 E-value=1.6e-07 Score=89.64 Aligned_cols=104 Identities=18% Similarity=0.118 Sum_probs=58.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEe---CCcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL---DKNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++... ......+|..... +.+ .-.+.|+||||...... .....+++++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~~d 103 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR---LRPLSYPQTD 103 (204)
Confidence 568999999999999999999997654 2333334332222 122 22456999999754321 1122344445
Q ss_pred cccccCCCch-----hHH-HH---HhhC--CcchhhhhhCCCCCC
Q 007611 336 RIEKLDDPVG-----PVK-EI---LNRC--PANLLISLYKLPSFD 369 (596)
Q Consensus 336 ~i~~l~D~~~-----~v~-~i---L~~~--~~~~L~~l~ki~~~~ 369 (596)
.+..+.|... .+. .+ +... ..+.+++.||+|...
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 4444433211 111 11 1111 346677788887643
No 153
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.20 E-value=1.5e-06 Score=96.52 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=71.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc---------------ccc------CCCCceeeeEEEEe---CCcEEEEecCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA---------------NVG------ATPGLTRSMQEVQL---DKNVKLLDCPG 316 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~---------------~vs------~~PgtTr~~q~v~l---~~~i~LiDTPG 316 (596)
...+|+|||.+|+|||||+|+|+..... .+. ...|+|.....+.+ +..+.|+||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4578999999999999999999963211 011 13455544332222 45799999999
Q ss_pred CccCCCCChHHHHHhhccccccccCCCch----hHHHH---HhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 317 VVMLKSGENDASIALRNCKRIEKLDDPVG----PVKEI---LNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 317 I~~~~~~~~~~~~~L~~~~~i~~l~D~~~----~v~~i---L~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
...- .......++.++.+..+.|... ....+ +.....+.++++||+|... +..+.+..+....+
T Consensus 92 ~~df---~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~ 163 (529)
T 2h5e_A 92 HEDF---SEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELK 163 (529)
T ss_dssp STTC---CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred ChhH---HHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhC
Confidence 8643 2345567788887776655432 12223 3333456788889999754 44455555555433
No 154
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.20 E-value=4.8e-06 Score=80.18 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=61.8
Q ss_pred hhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---------CeEEEEcc
Q 007611 143 IEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---------PAVAFKCS 213 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---------ptv~f~~~ 213 (596)
...+|+||+|+|+.+++......+.+.+.. .++|+|+|+||+||++...+..++..+.+.+ ....+.
T Consensus 113 ~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 188 (223)
T 4dhe_A 113 RPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQ-- 188 (223)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEE--
T ss_pred CcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEE--
Confidence 444899999999999877555556566544 3789999999999999876554444333221 222221
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
..|+..+.|++.|++.|..+.+.
T Consensus 189 --------------------~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 189 --------------------LFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp --------------------EEBTTTTBSHHHHHHHHHHHHC-
T ss_pred --------------------EeecCCCcCHHHHHHHHHHhcCc
Confidence 34556778999999999876653
No 155
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.19 E-value=6.1e-07 Score=85.02 Aligned_cols=105 Identities=19% Similarity=0.122 Sum_probs=37.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCcee---eeEEEEeCC-----cEEEEecCCCccCCCCChHHHHHhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR---SMQEVQLDK-----NVKLLDCPGVVMLKSGENDASIALR 332 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr---~~q~v~l~~-----~i~LiDTPGI~~~~~~~~~~~~~L~ 332 (596)
..++|+|+|.+|||||||+|+|++.....++..+.||. ....+.++. .+.|+||||..... ......++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~ 95 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK---EQISQYWN 95 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH---HHHSTTCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH---HHHHHHHh
Confidence 46899999999999999999999873323334444442 233444443 58999999985321 01112344
Q ss_pred ccccccccCCCchh-----HH----HHHhh-----CCcchhhhhhCCCCC
Q 007611 333 NCKRIEKLDDPVGP-----VK----EILNR-----CPANLLISLYKLPSF 368 (596)
Q Consensus 333 ~~~~i~~l~D~~~~-----v~----~iL~~-----~~~~~L~~l~ki~~~ 368 (596)
+++.+..+.|.... +. .+... ...+.+++.||+|..
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 55555544443221 11 22222 234566777887754
No 156
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.18 E-value=1.3e-06 Score=92.71 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=61.4
Q ss_pred EEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhhcccccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l 340 (596)
+|+++|.+|+|||||+|+|+ ..|+|.+...+.+ +.++.|+||||...- .......++.++.+..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f---~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT---LKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC---HHHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH---HHHHHHHHHHCCEEEEE
Confidence 89999999999999999999 3466666554443 457999999998532 12334455667766655
Q ss_pred CCCch----hH---HHHHhhCCcch-hhhhh-CCCC
Q 007611 341 DDPVG----PV---KEILNRCPANL-LISLY-KLPS 367 (596)
Q Consensus 341 ~D~~~----~v---~~iL~~~~~~~-L~~l~-ki~~ 367 (596)
.| .. .. ..++.....+. ++++| |+|.
T Consensus 91 vd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 91 IP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp EC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred Ec-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 55 21 12 23344455555 77778 9987
No 157
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.18 E-value=1.8e-06 Score=81.30 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=48.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++..... ..++.+.+.. ..+..+ ..+.|+||||..... ......+.+++.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~d~ 82 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFP---AMQRLSISKGHA 82 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCH---HHHHHHHHHCSE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhH---HHHHHhhccCCE
Confidence 46899999999999999999999866432 1122222221 222232 268899999965321 223344566665
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+.|.
T Consensus 83 ~i~v~d~ 89 (199)
T 2gf0_A 83 FILVFSV 89 (199)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 5544443
No 158
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.17 E-value=1.9e-06 Score=82.93 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=49.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++..... ..++.|++.....+.++. .+.|+||||.... .......+++++.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF---RSITQSYYRSANA 101 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG---HHHHGGGSTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH---HHHHHHHHhcCCE
Confidence 46899999999999999999999876421 222233333333444443 6899999996422 1112233556666
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+.|.
T Consensus 102 ~i~v~D~ 108 (201)
T 2ew1_A 102 LILTYDI 108 (201)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 6555443
No 159
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.17 E-value=1.3e-06 Score=83.27 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=47.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++...... .++.|++.....+.++. .+.|+||||....... ....+++++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~---~~~~~~~~d~ 100 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV---TRSYYRGAAG 100 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC---CHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH---HHHHhccCCE
Confidence 468999999999999999999998765322 12223333334444443 7899999997533221 2235566666
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+.|.
T Consensus 101 ~i~v~d~ 107 (200)
T 2o52_A 101 ALLVYDI 107 (200)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 6555443
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.17 E-value=2e-06 Score=92.91 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=61.5
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcccc----------ccccCCCCce----------------------eeeEEEEe--
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHV----------ANVGATPGLT----------------------RSMQEVQL-- 305 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv----------~~vs~~PgtT----------------------r~~q~v~l-- 305 (596)
+..++|+++|.+|+|||||+|+|++... ..++..+|+| .+.....+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4468999999999999999999986541 1223344443 33222222
Q ss_pred -CCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCch----hH---HHHHhhCCc-chhhhhhCCCCCC
Q 007611 306 -DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG----PV---KEILNRCPA-NLLISLYKLPSFD 369 (596)
Q Consensus 306 -~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~----~v---~~iL~~~~~-~~L~~l~ki~~~~ 369 (596)
+..+.|+||||...- .......+..++.+..+.|... .. ..++..... +.++++||+|...
T Consensus 102 ~~~~~~iiDtpGh~~f---~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQY---TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGG---HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHH---HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 346899999996532 1223344667776665555322 11 123344443 4677889999764
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.15 E-value=7.7e-07 Score=97.71 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=62.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc----c--ccccCCCCceeeeEE--EEe-CCcEEEEecCCCccCCCCChHHHHHh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH----V--ANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSGENDASIAL 331 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k----v--~~vs~~PgtTr~~q~--v~l-~~~i~LiDTPGI~~~~~~~~~~~~~L 331 (596)
..++|+++|.+|+|||||+|+|++.. . ......+|+|.+... +.+ +..+.|+||||...- .......+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~---~~~~~~~~ 94 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL---IRAVVSAA 94 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH---HHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH---HHHHHHHH
Confidence 46899999999999999999999876 1 234556788876543 333 347999999997421 12233445
Q ss_pred hccccccccCCCch---h----HHHHHhhCCcchhhhhhCCCCCC
Q 007611 332 RNCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSFD 369 (596)
Q Consensus 332 ~~~~~i~~l~D~~~---~----v~~iL~~~~~~~L~~l~ki~~~~ 369 (596)
..++.+..+.|... + ...++.....+.++++||+|...
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG 139 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC
T ss_pred hhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 66666665555422 1 12345555666788899999764
No 162
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.14 E-value=6.9e-07 Score=84.32 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=54.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|++.... ...++.|++.....+.++ ..+.|+||||.... .......+++++.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY---RTITTAYYRGAMG 98 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC---HHHHHHHHTTCCE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH---HHHHHHHHccCCE
Confidence 5689999999999999999999987632 233445666666665543 35899999995432 1223445667776
Q ss_pred ccccCCC
Q 007611 337 IEKLDDP 343 (596)
Q Consensus 337 i~~l~D~ 343 (596)
+..+.|.
T Consensus 99 ~i~v~d~ 105 (191)
T 3dz8_A 99 FILMYDI 105 (191)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 6655544
No 163
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.13 E-value=4.1e-07 Score=99.20 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=64.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc--c----------------------ccccC------CCCceeeeEEEEe---CC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH--V----------------------ANVGA------TPGLTRSMQEVQL---DK 307 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k--v----------------------~~vs~------~PgtTr~~q~v~l---~~ 307 (596)
..++|++||++|+|||||+|+|++.. + +.+.+ .+|+|.+.....+ +.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 45899999999999999999998641 0 00111 2677766544333 35
Q ss_pred cEEEEecCCCccCCCCChHHHHHhhccccccccCCCchhH-----------H---HHHhhCCcc-hhhhhhCCCCC
Q 007611 308 NVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPV-----------K---EILNRCPAN-LLISLYKLPSF 368 (596)
Q Consensus 308 ~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~v-----------~---~iL~~~~~~-~L~~l~ki~~~ 368 (596)
++.|+||||...- .......+..++.+..+.|..... . .++.....+ .++++||+|..
T Consensus 86 ~~~iiDtPGh~~f---~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 86 QVTVIDAPGHRDF---IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp EEEEEECCCCTTH---HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred eEEEEECCCcHHH---HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 7999999995421 122333455666666665554321 1 123334433 66778999876
No 164
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.13 E-value=2.3e-06 Score=82.58 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=51.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
+.++|+|||.+|||||||+|+|++.... ..+..|+.. ...+.++. .+.|+||||...... .....+.+++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~---~~~~~~~~~d 107 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR---LRPLFYPDAS 107 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC------------------CEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH---HHHHHhccCC
Confidence 4689999999999999999999987642 222233322 22233433 688999999653321 1223455666
Q ss_pred cccccCCCchh--HHH----H---H-hhC-CcchhhhhhCCCCCCC
Q 007611 336 RIEKLDDPVGP--VKE----I---L-NRC-PANLLISLYKLPSFDS 370 (596)
Q Consensus 336 ~i~~l~D~~~~--v~~----i---L-~~~-~~~~L~~l~ki~~~~~ 370 (596)
.+..+-|.... ... + + ..+ ..+.+++.||+|....
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 108 VLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 66555443221 111 1 1 112 3356667788876543
No 165
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.12 E-value=1.9e-06 Score=81.70 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=58.0
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEeCC---cEEEEecCCCccCCCCChHHHHHhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLDK---NVKLLDCPGVVMLKSGENDASIALRNC 334 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~ 334 (596)
...++|+|||.+|||||||+|+|++... +..+++||..... +.++. .+.|+||||....... ....+.++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~ 92 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL---RPLCYTNT 92 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS---GGGGGTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH---hHhhcCCC
Confidence 3578999999999999999999998763 3445555544332 33333 5679999998643221 11245566
Q ss_pred ccccccCCCchh-----HH-----HHHhhC-CcchhhhhhCCCCCC
Q 007611 335 KRIEKLDDPVGP-----VK-----EILNRC-PANLLISLYKLPSFD 369 (596)
Q Consensus 335 ~~i~~l~D~~~~-----v~-----~iL~~~-~~~~L~~l~ki~~~~ 369 (596)
+.+..+.|.... +. .+...+ ..+.+++.||+|...
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 666555443221 11 112222 335666778877543
No 166
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.11 E-value=2.8e-06 Score=81.45 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=48.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEe-CC--cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DK--NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l-~~--~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.+|||||||+|+|++... ++..+++|..... +.+ +. .+.|+||||....... ....+++++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~d 103 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL---RPLSYPQTD 103 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT---GGGGCTTCS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH---HHHHhccCC
Confidence 568999999999999999999997653 3445555544333 222 22 3559999998543211 122455666
Q ss_pred cccccCCC
Q 007611 336 RIEKLDDP 343 (596)
Q Consensus 336 ~i~~l~D~ 343 (596)
.+..+.|.
T Consensus 104 ~~i~v~d~ 111 (204)
T 4gzl_A 104 VFLICFSL 111 (204)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55554443
No 167
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=1.7e-06 Score=81.46 Aligned_cols=105 Identities=16% Similarity=0.065 Sum_probs=63.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeC---CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++... ...++.|+.... .+.++ ..+.|+||||....... ....+++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d 91 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL---RPLSYPMTD 91 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT---GGGGCTTCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH---HHHhcCCCC
Confidence 458999999999999999999998753 233344443222 23333 25789999998643221 122455666
Q ss_pred cccccCCCchh-----H-----HHHHhhC-CcchhhhhhCCCCCCC
Q 007611 336 RIEKLDDPVGP-----V-----KEILNRC-PANLLISLYKLPSFDS 370 (596)
Q Consensus 336 ~i~~l~D~~~~-----v-----~~iL~~~-~~~~L~~l~ki~~~~~ 370 (596)
.+..+-|...+ + ..+...+ ..+.+++.||+|....
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 66555443221 1 1122222 3467778899987654
No 168
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.10 E-value=3.4e-06 Score=78.17 Aligned_cols=78 Identities=19% Similarity=0.111 Sum_probs=47.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeC---CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++.... .....|+.... .+.++ -.+.|+||||....... ....+++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d 78 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL---RPLSYPQTD 78 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT---GGGGCTTCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH---HHHhccCCc
Confidence 4589999999999999999999976542 22233332211 22332 24679999998643221 112345566
Q ss_pred cccccCCC
Q 007611 336 RIEKLDDP 343 (596)
Q Consensus 336 ~i~~l~D~ 343 (596)
.+..+.|.
T Consensus 79 ~~i~v~d~ 86 (186)
T 1mh1_A 79 VSLICFSL 86 (186)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55544443
No 169
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.10 E-value=1.5e-06 Score=94.34 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=40.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc---------------ccccccCCCCceeee---EEEEe-----------CCcEEE
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC---------------HVANVGATPGLTRSM---QEVQL-----------DKNVKL 311 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~---------------kv~~vs~~PgtTr~~---q~v~l-----------~~~i~L 311 (596)
+...|+|||.||+|||||+|.|++. +....+..| +|+.. .+... +.+|+|
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCccccccCCCCcceEEE
Confidence 4678999999999999999999975 333333333 33221 11111 236999
Q ss_pred EecCCCccCC
Q 007611 312 LDCPGVVMLK 321 (596)
Q Consensus 312 iDTPGI~~~~ 321 (596)
+||||+..+.
T Consensus 145 lDTeG~~~~~ 154 (447)
T 3q5d_A 145 MDTQGTFDSQ 154 (447)
T ss_dssp EEEECCCSSH
T ss_pred EcCCcccccc
Confidence 9999998763
No 170
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.09 E-value=1.2e-06 Score=81.55 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeC---CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.+|||||||+|+|++... .....|+++.+. ..+.++ ..+.|+||||....... ....+++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d 82 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI---TTAYYRGAM 82 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------CCTTTTTCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh---HHHHHhcCC
Confidence 458999999999999999999997653 223334444433 234444 36899999997532111 112345555
Q ss_pred cccccCCCchh-----HH----HHHhhC--CcchhhhhhCCCCC
Q 007611 336 RIEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPSF 368 (596)
Q Consensus 336 ~i~~l~D~~~~-----v~----~iL~~~--~~~~L~~l~ki~~~ 368 (596)
.+..+-|...+ +. .+...+ ..+.+++.||+|..
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 55544443221 11 122222 23556667777754
No 171
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.08 E-value=2.9e-06 Score=80.83 Aligned_cols=106 Identities=12% Similarity=0.163 Sum_probs=61.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee-EEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM-QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~-q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|+|.+|||||||+|+|.+..... ...|.++... ..+.++. .+.|+||||....... ....+++++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~d~ 99 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL---RPLSYPDTDV 99 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTT---GGGGCTTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHH---HHHhcCCCCE
Confidence 35899999999999999999999876432 2223333222 2234433 6889999997533211 1124455665
Q ss_pred ccccCCCchh-----H----HHHHhh-C-CcchhhhhhCCCCCCC
Q 007611 337 IEKLDDPVGP-----V----KEILNR-C-PANLLISLYKLPSFDS 370 (596)
Q Consensus 337 i~~l~D~~~~-----v----~~iL~~-~-~~~~L~~l~ki~~~~~ 370 (596)
+..+-|.... + ...+.. + ..+.+++.||+|....
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 5544333211 1 112222 1 3456777788876544
No 172
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.08 E-value=5.7e-07 Score=94.24 Aligned_cols=37 Identities=38% Similarity=0.644 Sum_probs=28.3
Q ss_pred ccceEEEeecCCCCCcchHHHhhh------ccccccccCCCCc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLK------RCHVANVGATPGL 296 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~------~~kv~~vs~~Pgt 296 (596)
.....|+|+|.||+|||||+|.|. +.+++.++..|++
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 456889999999999999999998 4555555444433
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.08 E-value=3.2e-06 Score=96.73 Aligned_cols=120 Identities=13% Similarity=0.169 Sum_probs=71.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc--c---ccccC------------CCCceeeeEEEEe---CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH--V---ANVGA------------TPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k--v---~~vs~------------~PgtTr~~q~v~l---~~~i~LiDTPGI~~~ 320 (596)
...+|+|||.+|+|||||+|+|+... . ..+.. ..|+|.......+ +..+.|+||||....
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45789999999999999999998421 0 01111 3456655443332 457999999998642
Q ss_pred CCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 321 KSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
.......++.|+.+..+.|+.. .+...+.....+.++++||+|... +....+..+....+
T Consensus 91 ---~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~ 158 (691)
T 1dar_A 91 ---TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLG 158 (691)
T ss_dssp ---HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhC
Confidence 2345567777887776655432 122234445667788899999764 44555555554433
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.07 E-value=4.9e-07 Score=99.65 Aligned_cols=104 Identities=15% Similarity=0.255 Sum_probs=65.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
++.+|+|+|++|+|||||+|+|++..+ ..+..+|+|.+...+.+ +..+.|+||||........ ...+..|+.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~---~~~~~~aD~a 78 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR---ARGAQATDIV 78 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB---CSSSBSCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH---HHHHhhCCEE
Confidence 567899999999999999999998664 34556788877654443 4579999999975432111 0123334333
Q ss_pred cccCCCc-------hhHHHHHhhCCcchhhhhhCCCCC
Q 007611 338 EKLDDPV-------GPVKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 338 ~~l~D~~-------~~v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
..+.|.. ......+.....+.++.+||+|..
T Consensus 79 ILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 79 VLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp EEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred EEEeecccCccHHHHHHHHHHHhcCceEEEEEEecccc
Confidence 3332211 112233444555778888999864
No 175
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.06 E-value=1.7e-06 Score=82.37 Aligned_cols=58 Identities=26% Similarity=0.167 Sum_probs=37.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCCcee--eeEEEEeCC---cEEEEecCCCcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR--SMQEVQLDK---NVKLLDCPGVVM 319 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr--~~q~v~l~~---~i~LiDTPGI~~ 319 (596)
.++|+|||.||||||||+|.|++.....++..++++. ....+.++. .+.++||+|...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 5789999999999999999999755433444443332 223344443 457899999754
No 176
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.05 E-value=1.8e-06 Score=92.17 Aligned_cols=107 Identities=14% Similarity=0.190 Sum_probs=66.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc---------------ccCCCCceeeeEEEEe---CCcEEEEecCCCccCCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN---------------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKS 322 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~---------------vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~ 322 (596)
..++|+++|.+|+|||||+|+|++..... .....|+|.....+.+ +..+.|+||||...-
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f-- 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY-- 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH--
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH--
Confidence 35789999999999999999999742100 0114577877655444 367999999998532
Q ss_pred CChHHHHHhhccccccccCCCch----h---HHHHHhhCCcch-hhhhhCCCCCCC
Q 007611 323 GENDASIALRNCKRIEKLDDPVG----P---VKEILNRCPANL-LISLYKLPSFDS 370 (596)
Q Consensus 323 ~~~~~~~~L~~~~~i~~l~D~~~----~---v~~iL~~~~~~~-L~~l~ki~~~~~ 370 (596)
.......+..++.+..+.|... . ...++.....+. ++++||+|...+
T Consensus 80 -~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 134 (397)
T 1d2e_A 80 -VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQD 134 (397)
T ss_dssp -HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSC
T ss_pred -HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCC
Confidence 1122233455665555544322 1 123344455564 577899997643
No 177
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.05 E-value=3.3e-06 Score=79.70 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=46.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeC---CcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.+|||||||+|+|++... ......|+.... .+.++ ..+.|+||||...... .....+++++
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d 96 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR---LRPLSYADSD 96 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT---TGGGGCTTCS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH---HhHhhccCCc
Confidence 568999999999999999999998774 223333332221 22232 2468999999653321 1122345555
Q ss_pred cccccCC
Q 007611 336 RIEKLDD 342 (596)
Q Consensus 336 ~i~~l~D 342 (596)
.+..+.|
T Consensus 97 ~~i~v~d 103 (194)
T 3reg_A 97 VVLLCFA 103 (194)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5544443
No 178
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.04 E-value=1.6e-06 Score=92.77 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=60.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE-------EE---------------EeCCcEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ-------EV---------------QLDKNVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q-------~v---------------~l~~~i~LiDTPGI~ 318 (596)
..++|+++|.+|+|||||+|+|++.........+++|.... .+ .....+.|+||||..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 56899999999999999999999854322222222221100 00 001468999999953
Q ss_pred cCCCCChHHHHHhhccccccccCCCch-----hHH---HHHhhCC-cchhhhhhCCCCCC
Q 007611 319 MLKSGENDASIALRNCKRIEKLDDPVG-----PVK---EILNRCP-ANLLISLYKLPSFD 369 (596)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~D~~~-----~v~---~iL~~~~-~~~L~~l~ki~~~~ 369 (596)
.. .......+..++.+..+.|... ... .++..+. ++.++++||+|...
T Consensus 87 ~~---~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 87 VL---MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS 143 (403)
T ss_dssp GG---HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred HH---HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc
Confidence 21 1233445566666655544321 122 2333333 35677889998764
No 179
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.04 E-value=2.5e-06 Score=81.41 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=47.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~--q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|||.||||||||+|+|++... .....|++|.+. ..+.++. .+.|+||||..... ..-....+++++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--~~~~~~~~~~~d 98 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG--GWLRDHCLQTGD 98 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG--HHHHHHHHHHCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch--hhhHHHhhccCC
Confidence 458999999999999999999986543 123344444332 2333432 56788999985321 111223455565
Q ss_pred cccccCC
Q 007611 336 RIEKLDD 342 (596)
Q Consensus 336 ~i~~l~D 342 (596)
.+..+-|
T Consensus 99 ~~ilv~d 105 (195)
T 3cbq_A 99 AFLIVFS 105 (195)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5554433
No 180
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.03 E-value=5.5e-06 Score=77.57 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=46.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++..... ..++.+.+.. ..+.++ ..+.|+||||....... ....+++++.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~~~ 81 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV---RPLSYPDSDA 81 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTT---GGGGCTTCSE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhh---HHhhcCCCcE
Confidence 46899999999999999999999876421 1222222221 123333 25889999997543211 1123455555
Q ss_pred ccccCC
Q 007611 337 IEKLDD 342 (596)
Q Consensus 337 i~~l~D 342 (596)
+..+-|
T Consensus 82 ~i~v~d 87 (184)
T 1m7b_A 82 VLICFD 87 (184)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 544444
No 181
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.01 E-value=4.5e-06 Score=87.81 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=59.6
Q ss_pred cceEEEeecCCCCCcchHHHhhh------ccccccccCCCCceeee------------------EEE-------------
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK------RCHVANVGATPGLTRSM------------------QEV------------- 303 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~------~~kv~~vs~~PgtTr~~------------------q~v------------- 303 (596)
....|+|+|.||||||||+|.|. +.+++.+..-|+.|... ..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 56789999999999999999996 44555555555444310 000
Q ss_pred ----------E-eCCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchhH--HHHHh-hCCcchhhhhhCCCCC
Q 007611 304 ----------Q-LDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPV--KEILN-RCPANLLISLYKLPSF 368 (596)
Q Consensus 304 ----------~-l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~v--~~iL~-~~~~~~L~~l~ki~~~ 368 (596)
. .+..++||||||+... ....+..++.+..+.|+.... ..+.. ....+.++++||+|..
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~------~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQS------EVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGE 230 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSH------HHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcH------HHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCc
Confidence 0 1457999999997642 233456777766665543211 00100 0123567788998864
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.00 E-value=3.3e-06 Score=88.38 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=62.4
Q ss_pred ccceEEEeecCCCCCcchHHHhhh------ccccccccCCCCceeee--E----------------EE------------
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLK------RCHVANVGATPGLTRSM--Q----------------EV------------ 303 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~------~~kv~~vs~~PgtTr~~--q----------------~v------------ 303 (596)
.....|+|+|.||+|||||+|.|. +.+++.++.-|++|..- . .+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 356889999999999999999996 45666676667665420 0 00
Q ss_pred ------------EeCCcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchhHH-HHHh--hCCcchhhhhhCCCCC
Q 007611 304 ------------QLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVK-EILN--RCPANLLISLYKLPSF 368 (596)
Q Consensus 304 ------------~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~v~-~iL~--~~~~~~L~~l~ki~~~ 368 (596)
.-+..++|+||||+..+. ..++..++.+..+.|+..... ..+. ....+.++++||+|..
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~------~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE------TEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGD 207 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH------HHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTT
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH------HHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCC
Confidence 014579999999997531 224577777777766643211 0000 0122456777888865
Q ss_pred C
Q 007611 369 D 369 (596)
Q Consensus 369 ~ 369 (596)
.
T Consensus 208 ~ 208 (341)
T 2p67_A 208 N 208 (341)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.99 E-value=2e-06 Score=79.64 Aligned_cols=78 Identities=17% Similarity=0.060 Sum_probs=42.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEe---CCcEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL---DKNVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l---~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|+|++... ....++|+..... +.+ ...+.|+||||....... ....+++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d 81 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL---RPLSYRGAD 81 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTT---GGGGGTTCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh---HHhhccCCC
Confidence 468999999999999999999997763 2333334322111 111 234669999997543211 122455566
Q ss_pred cccccCCC
Q 007611 336 RIEKLDDP 343 (596)
Q Consensus 336 ~i~~l~D~ 343 (596)
.+..+-|.
T Consensus 82 ~~i~v~d~ 89 (182)
T 3bwd_D 82 VFILAFSL 89 (182)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55555443
No 184
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.99 E-value=5.8e-06 Score=93.06 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=64.7
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc--------c------cCCCCceeeeEEEEe--------CCcEEEEecCCCccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN--------V------GATPGLTRSMQEVQL--------DKNVKLLDCPGVVML 320 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~--------v------s~~PgtTr~~q~v~l--------~~~i~LiDTPGI~~~ 320 (596)
.+|+|||++|+|||||+++|+...-.. + ....|+|...+.+.+ +..+.|+||||....
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 579999999999999999998632111 1 113567766544433 146889999998643
Q ss_pred CCCChHHHHHhhccccccccCCCch---h----HHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 321 KSGENDASIALRNCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~D~~~---~----v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
.......|+.|+.+..+.|... + ....+.....+.++++||+|... +.+.....++...+
T Consensus 85 ---~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg 152 (599)
T 3cb4_D 85 ---SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVG 152 (599)
T ss_dssp ---HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhC
Confidence 2234556777777665555422 1 11222334557888899999754 45555555655544
No 185
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.98 E-value=3.2e-06 Score=81.22 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=60.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceee--eEEEEe-------------CCcEEEEecCCCccCCCCCh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQL-------------DKNVKLLDCPGVVMLKSGEN 325 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~--~q~v~l-------------~~~i~LiDTPGI~~~~~~~~ 325 (596)
..++|+|||.+|||||||||+|++.... ....|.++.+ ...+.+ ...+.|+||||.... ..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~ 99 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF---RS 99 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH---HH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH---Hh
Confidence 4689999999999999999999987642 1111111111 112222 235899999996421 12
Q ss_pred HHHHHhhccccccccCCCchh-----HHHHHhhC-------CcchhhhhhCCCCC
Q 007611 326 DASIALRNCKRIEKLDDPVGP-----VKEILNRC-------PANLLISLYKLPSF 368 (596)
Q Consensus 326 ~~~~~L~~~~~i~~l~D~~~~-----v~~iL~~~-------~~~~L~~l~ki~~~ 368 (596)
.....+++++.+..+.|.... +..++..+ ..+.+++.||+|..
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 233456777777666554322 22233322 23556777888753
No 186
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.98 E-value=3.9e-06 Score=81.89 Aligned_cols=58 Identities=26% Similarity=0.205 Sum_probs=38.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCcee--eeEEEEeCC---cEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR--SMQEVQLDK---NVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr--~~q~v~l~~---~i~LiDTPGI~ 318 (596)
..++|+|||.||||||||+|.|++.....+..+|.++. ....+.++. ++.++||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 45899999999999999999999765433444443332 223344443 46789999864
No 187
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.97 E-value=1.3e-05 Score=74.80 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=59.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEEcchhHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFKCSTQEQ 217 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv~f~~~~~~~ 217 (596)
.....+|+|++|+|+.++.......+.+++... +.|+|+|+||+||++..........++..+ ..+.|
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------- 170 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI------- 170 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE-------
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce-------
Confidence 333455999999999988765555566666553 689999999999998765544444433321 11111
Q ss_pred hhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
...|+..+.|++.|++.|....
T Consensus 171 ---------------~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 171 ---------------IPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp ---------------EECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------------EEEecCCCCCHHHHHHHHHHHh
Confidence 1244566788999998887654
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.96 E-value=1.2e-05 Score=92.21 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=74.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc--cc---cc------cC------CCCceeeeEEEEe---C-------CcEEEEe
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH--VA---NV------GA------TPGLTRSMQEVQL---D-------KNVKLLD 313 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k--v~---~v------s~------~PgtTr~~q~v~l---~-------~~i~LiD 313 (596)
...+|+|||++|+|||||+++|+... +. .| .+ ..|+|.....+.+ + ..+.|+|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45789999999999999999997431 11 11 11 3466655443332 2 5789999
Q ss_pred cCCCccCCCCChHHHHHhhccccccccCCCchh-------HHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 314 CPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 314 TPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~-------v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
|||.... .......|+.|+.+..+.|+... +...+.....+.++++||+|... +....+..+....+
T Consensus 89 TPG~~df---~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 89 TPGHVDF---TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLG 163 (704)
T ss_pred CCCccch---HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhC
Confidence 9998643 23455677778777666665421 12223334557778889998653 44555555544433
No 189
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.94 E-value=1e-05 Score=76.92 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=40.6
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeCC---cEEEEecCCCccC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVML 320 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~ 320 (596)
.++|+|||.+|||||||+|.|++...... .++.|++.....+.++. .+.|+||||....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh
Confidence 47899999999999999999998764322 23334433334455543 4678999997543
No 190
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.93 E-value=1.9e-06 Score=97.03 Aligned_cols=103 Identities=19% Similarity=0.304 Sum_probs=61.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCC-CceeeeEE--EEeC-------------------CcEEEEecCCCc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP-GLTRSMQE--VQLD-------------------KNVKLLDCPGVV 318 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P-gtTr~~q~--v~l~-------------------~~i~LiDTPGI~ 318 (596)
++..|+|+|++|+|||||+|+|++..+. ...| |+|.+... +..+ .++.|+||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 4678999999999999999999987542 2233 55554222 1110 148999999985
Q ss_pred cCCCCChHHHHHhhccccccccCCCch---h----HHHHHhhCCcchhhhhhCCCCC
Q 007611 319 MLKSGENDASIALRNCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~D~~~---~----v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
....... ..++.|+.+..+.|... + ...++.....+.++.+||+|..
T Consensus 82 ~F~~~~~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 82 AFTTLRK---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp CCTTSBC---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred HHHHHHH---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccc
Confidence 4322111 12344555544444322 1 2234555566788889999864
No 191
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.93 E-value=1.2e-05 Score=90.38 Aligned_cols=125 Identities=19% Similarity=0.199 Sum_probs=84.4
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH---HHHHHHHHHHHhcCCeEEEE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR---ESVEKWLKYLREELPAVAFK 211 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~---e~l~~Wl~yLr~~~ptv~f~ 211 (596)
|..++...+..+|.+|+|+||.++.............. .+.|+|+|+||+||.+. +....|..++. ++.
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg--~~~---- 155 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAADPERVAEEIEDIVG--IDA---- 155 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCCHHHHHHHHHHHTC--CCC----
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCcccccHHHHHHHHHHHhC--CCc----
Confidence 66788889999999999999998865433332222222 47899999999999863 33444544431 110
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhcc--ccccceEEEeecC---CCCCcchHHHhhhcc
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH--EIKKSITVGVIGL---PNVGKSSLINSLKRC 285 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~--~~k~~i~V~vVG~---PNVGKSSLINsL~~~ 285 (596)
......|+..+.|++.|++.|.++.+.. ....++...|+.. |++|+.++++.+.|.
T Consensus 156 ------------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 156 ------------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp ------------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred ------------------ceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 0112345566789999999998876642 2234555555555 999999999988875
No 192
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.92 E-value=7.1e-06 Score=77.03 Aligned_cols=58 Identities=16% Similarity=0.343 Sum_probs=34.5
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccC-CCCceeeeEEEEe--------CCcEEEEecCCCcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGA-TPGLTRSMQEVQL--------DKNVKLLDCPGVVM 319 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~-~PgtTr~~q~v~l--------~~~i~LiDTPGI~~ 319 (596)
.++|+|||.+|||||||+|.|++.....++. .|.++.+.....+ ...+.++||||...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 3689999999999999999999853222222 2222223222211 33688999999753
No 193
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.92 E-value=9.9e-06 Score=77.45 Aligned_cols=78 Identities=17% Similarity=0.078 Sum_probs=48.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q--~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~ 335 (596)
..++|+|+|.+|||||||+|.|++... ...+++|+.... .+.++. .+.|+||||....... ....+++++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d 82 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL---RPLSYRGAD 82 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-----CGGGTTCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH---HHhhccCCC
Confidence 458999999999999999999997764 223333332222 233333 6889999998643221 112455666
Q ss_pred cccccCCC
Q 007611 336 RIEKLDDP 343 (596)
Q Consensus 336 ~i~~l~D~ 343 (596)
.+..+.|.
T Consensus 83 ~~ilv~d~ 90 (212)
T 2j0v_A 83 IFVLAFSL 90 (212)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55555443
No 194
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.92 E-value=1.1e-05 Score=75.91 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=45.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i 337 (596)
+.++|+|||.+|||||||+|.|++...... ..|-.......+.++. .+.|+||||..... .+++++.+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~ 89 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQE-ESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FAAWVDAV 89 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCC-CCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HHHHCSEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCCcceEEEEEEECCEEEEEEEEECCCChhhh--------eecCCCEE
Confidence 568999999999999999999998764321 1121111122344432 56779999975321 45556655
Q ss_pred cccCC
Q 007611 338 EKLDD 342 (596)
Q Consensus 338 ~~l~D 342 (596)
..+-|
T Consensus 90 i~v~d 94 (184)
T 3ihw_A 90 VFVFS 94 (184)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54433
No 195
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.90 E-value=1.2e-05 Score=77.45 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=58.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++...... .++.+.+. ...+.++ ..+.|+||||....... ....+++++.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~d~ 102 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNV---RPLSYPDSDA 102 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTT---GGGGCTTCSE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHH---HHhhccCCCE
Confidence 468999999999999999999998764211 12222221 1123333 25889999997543211 1123455555
Q ss_pred ccccCCCchh-----H-H----HHHhhC-CcchhhhhhCCCCCCC
Q 007611 337 IEKLDDPVGP-----V-K----EILNRC-PANLLISLYKLPSFDS 370 (596)
Q Consensus 337 i~~l~D~~~~-----v-~----~iL~~~-~~~~L~~l~ki~~~~~ 370 (596)
+..+-|.... + . .+...+ ..+.+++.||+|...+
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccc
Confidence 5544443211 1 1 111222 2356666788776433
No 196
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.89 E-value=3.9e-06 Score=90.72 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=57.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc--cc------------cc----------------cCCCCceeeeEEEEe---CC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH--VA------------NV----------------GATPGLTRSMQEVQL---DK 307 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k--v~------------~v----------------s~~PgtTr~~q~v~l---~~ 307 (596)
..++|+++|.+|+|||||+|+|++.. +. .. ...+|+|.+.....+ +.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45899999999999999999998641 10 00 114688877654333 45
Q ss_pred cEEEEecCCCccCCCCChHHHHHhhccccccccCCCchh-----------HHH---HHhhCCc-chhhhhhCCCCCC
Q 007611 308 NVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-----------VKE---ILNRCPA-NLLISLYKLPSFD 369 (596)
Q Consensus 308 ~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~-----------v~~---iL~~~~~-~~L~~l~ki~~~~ 369 (596)
.+.|+||||.... .......+..++.+..+.|.... ... ++...+. +.++++||+|...
T Consensus 85 ~~~iiDtpG~~~f---~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 85 FFTIIDAPGHRDF---VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp EEEECCCSSSTTH---HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred EEEEEECCCcHHH---HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 7999999997532 12233345566655555443321 112 2233343 4557789998754
No 197
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.88 E-value=1.4e-05 Score=77.30 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=59.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccc-cCCCCceeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~v-s~~PgtTr~~q~v~l~---~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
..++|+|||.+|||||||+|+|++...... .++.|.+. ...+.++ ..+.|+||||....... ....+++++.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~d~ 101 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNV---RPLCYSDSDA 101 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTT---GGGGCTTCSE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHH---HHHHcCCCeE
Confidence 468999999999999999999998764221 22222222 1122332 36789999997543221 1224555665
Q ss_pred ccccCCCchh------HHH----HHhhC-CcchhhhhhCCCCCCC
Q 007611 337 IEKLDDPVGP------VKE----ILNRC-PANLLISLYKLPSFDS 370 (596)
Q Consensus 337 i~~l~D~~~~------v~~----iL~~~-~~~~L~~l~ki~~~~~ 370 (596)
+..+-|.... +.. +...+ ..+.+++.||+|...+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 5544433211 111 11222 3356667788876543
No 198
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.87 E-value=3.9e-05 Score=81.96 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCC-CcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEE
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGT-RCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFK 211 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~s-r~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~ 211 (596)
..|.+.....+..+|++|+|+||+++... ........+... +.+|+|+|+||+||++.+.+..+...+++.+....+
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~- 163 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA- 163 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCC-
Confidence 34777888889999999999999998622 222222333322 347899999999999987666666555442210000
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhcc--ccccceEEEeecCCCC
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH--EIKKSITVGVIGLPNV 273 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~--~~k~~i~V~vVG~PNV 273 (596)
........|+..+.|++.|++.|.++.+.. ....++...|....++
T Consensus 164 ----------------~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v 211 (403)
T 3sjy_A 164 ----------------ENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDV 211 (403)
T ss_dssp ----------------TTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred ----------------CCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEee
Confidence 000112455667789999999998865432 2234555555543333
No 199
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.87 E-value=7.3e-06 Score=92.21 Aligned_cols=119 Identities=24% Similarity=0.234 Sum_probs=67.5
Q ss_pred ceEEEeecCCCCCcchHHHhhhcccccc--------c------cCCCCceeeeEEEEe--------CCcEEEEecCCCcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVAN--------V------GATPGLTRSMQEVQL--------DKNVKLLDCPGVVM 319 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~--------v------s~~PgtTr~~q~v~l--------~~~i~LiDTPGI~~ 319 (596)
-.+|+|||++|+|||||+|+|+...-.. + ....|+|...+.+.+ ...+.|+||||...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4689999999999999999998632110 1 112456654332221 13678999999975
Q ss_pred CCCCChHHHHHhhccccccccCCCchh-------HHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 320 LKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~D~~~~-------v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
.. ......++.|+.+..+.|.... ....+.....+.++++||+|... +.+..+..++...+
T Consensus 86 F~---~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg 154 (600)
T 2ywe_A 86 FS---YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLG 154 (600)
T ss_dssp GH---HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSC
T ss_pred HH---HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhC
Confidence 32 2345567777777666554321 11223334557788899999754 45555555555433
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.85 E-value=8.6e-06 Score=95.19 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=64.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCC---------------CceeeeEE--EEe-----------------C
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP---------------GLTRSMQE--VQL-----------------D 306 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P---------------gtTr~~q~--v~l-----------------~ 306 (596)
...+|+|||++|+|||||+|+|+..........+ |+|..... +.+ +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 3478999999999999999999975433332223 33332211 111 3
Q ss_pred CcEEEEecCCCccCCCCChHHHHHhhccccccccCCCchh-------HHHHHhhCCcchhhhhhCCCCC
Q 007611 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSF 368 (596)
Q Consensus 307 ~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~-------v~~iL~~~~~~~L~~l~ki~~~ 368 (596)
..+.|+||||...- .......++.|+.+..+.|.... +...+.....+.++++||+|..
T Consensus 98 ~~i~liDTPG~~df---~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDF---SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSS---CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhh---HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 46899999999754 23456677888877666554321 1112223345667788988753
No 201
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.85 E-value=5.2e-05 Score=71.02 Aligned_cols=96 Identities=14% Similarity=0.230 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhhc---CeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc----CC
Q 007611 134 AFYKELVKVIEVS---DVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE----LP 206 (596)
Q Consensus 134 ~~~kel~kvie~s---DVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~----~p 206 (596)
.|...+...+..+ |+||+|+|+.++.+.....+.+++.. .+.|+|+|+||+||.+...+......+.+. ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE 168 (195)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence 3444444455555 99999999999877655555566654 478999999999999876544333333321 11
Q ss_pred eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 207 tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.-.| ..|+..+.|++.|++.|.+..
T Consensus 169 ~~~~-----------------------~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 169 DELI-----------------------LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp SEEE-----------------------ECCTTTCTTHHHHHHHHHHHH
T ss_pred CceE-----------------------EEEccCCCCHHHHHHHHHHHh
Confidence 1112 344556788999998886543
No 202
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.85 E-value=1.8e-05 Score=74.93 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=40.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc-ccCCCCceeeeEEEEeCC---cEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~-vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~ 320 (596)
..++|+|||.+|||||||+|.|++..... ..++.|++.....+.++. .+.++||||....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 91 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 91 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcch
Confidence 35889999999999999999999876432 223334333334455543 3456999998643
No 203
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.83 E-value=6.6e-06 Score=89.85 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=52.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc------------------------cccc------CCCCceeeeEE--EEe-CC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV------------------------ANVG------ATPGLTRSMQE--VQL-DK 307 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv------------------------~~vs------~~PgtTr~~q~--v~l-~~ 307 (596)
..++|+++|++|+|||||+|+|+...- +.+. ...|+|.+... +.. +.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 468999999999999999999974210 0011 13567766543 222 45
Q ss_pred cEEEEecCCCccCCCCChHHHHHhhccccccccCCCchh-----------H---HHHHhhCCcc-hhhhhhCCCCC
Q 007611 308 NVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-----------V---KEILNRCPAN-LLISLYKLPSF 368 (596)
Q Consensus 308 ~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~~~-----------v---~~iL~~~~~~-~L~~l~ki~~~ 368 (596)
.+.|+||||...-. ......+..++.+..+.|.... . ..++...+.+ .++++||+|..
T Consensus 122 ~~~iiDtPGh~~f~---~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV---TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp EEEECCCCC--------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred EEEEEECCCcHHHH---HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 78999999985321 1122334556655544443221 1 1233334444 56778999975
No 204
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=1.1e-05 Score=85.23 Aligned_cols=60 Identities=28% Similarity=0.327 Sum_probs=31.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccccccCCC------Cceee--eEEEEe--C---CcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP------GLTRS--MQEVQL--D---KNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~P------gtTr~--~q~v~l--~---~~i~LiDTPGI~~~ 320 (596)
..++|+|||.+|||||||+|+|.+......+..| +.|.. ...+.+ + ..+.++||||+...
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 3588999999999999999999887654433321 12322 222222 1 25899999999543
No 205
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.77 E-value=1.8e-05 Score=81.33 Aligned_cols=97 Identities=12% Similarity=0.192 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC-HHHHHHHHHHHHhcCCeEEEEcc
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP-RESVEKWLKYLREELPAVAFKCS 213 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp-~e~l~~Wl~yLr~~~ptv~f~~~ 213 (596)
|.......+..+|++++|+|+.+ ++.....+.+.+.. .++|+|+|+||+|+.. +..+..++..+.+.++...+.
T Consensus 78 ~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i-- 152 (301)
T 1ega_A 78 MNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV-- 152 (301)
T ss_dssp HTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE--
T ss_pred HHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceE--
Confidence 33344667889999999999987 55444444444432 3789999999999998 677777888777665431111
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
++|+..+.|.+.|++.|..+.+.
T Consensus 153 --------------------~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 153 --------------------PISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp --------------------ECCTTTTTTHHHHHHHHHTTCCB
T ss_pred --------------------EEECCCCCCHHHHHHHHHHhCCc
Confidence 34455677888899888876553
No 206
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.73 E-value=2.9e-05 Score=79.21 Aligned_cols=79 Identities=22% Similarity=0.143 Sum_probs=51.1
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccccccccCCCCceeeeEE--EEeC-C--cEEEEecCCCccCCCCChHHHHHhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD-K--NVKLLDCPGVVMLKSGENDASIALRNC 334 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~PgtTr~~q~--v~l~-~--~i~LiDTPGI~~~~~~~~~~~~~L~~~ 334 (596)
...++|+|+|.+|||||||+|.|++... ....++||..... +.++ . .+.|+||||....... ....++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~ 227 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL---RPLSYPQT 227 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT---GGGGCTTC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH---HHHhccCC
Confidence 4578999999999999999999997653 3445566654433 2232 2 4559999998643221 12245566
Q ss_pred ccccccCCC
Q 007611 335 KRIEKLDDP 343 (596)
Q Consensus 335 ~~i~~l~D~ 343 (596)
+.+..+.|.
T Consensus 228 d~~i~v~d~ 236 (332)
T 2wkq_A 228 DVFLICFSL 236 (332)
T ss_dssp SEEEEEEET
T ss_pred CEEEEEEeC
Confidence 655555443
No 207
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.68 E-value=4.2e-05 Score=87.11 Aligned_cols=120 Identities=20% Similarity=0.145 Sum_probs=75.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-----cc------cC------CCCceeeeEEEEe---CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-----NV------GA------TPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-----~v------s~------~PgtTr~~q~v~l---~~~i~LiDTPGI~~~ 320 (596)
...+|+|||.+|+|||||+|+|++.... .+ .+ ..|+|...+...+ +..+.|+||||....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4578999999999999999999943211 01 00 1255555554443 457899999998643
Q ss_pred CCCChHHHHHhhccccccccCCCch----h---HHHHHhhCCcchhhhhhCCCCCCCHHHHHHHHHHHhc
Q 007611 321 KSGENDASIALRNCKRIEKLDDPVG----P---VKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRG 383 (596)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~D~~~----~---v~~iL~~~~~~~L~~l~ki~~~~~~~e~L~~la~~~g 383 (596)
.......++.++.+..+.|+.. . +...+.....+.++++|++|.....++.+..++...+
T Consensus 88 ---~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 88 ---VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDYYALLEDLRSTLG 154 (665)
T ss_dssp ---HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGCCCHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchhhhHHHHHHHHHHHhC
Confidence 1345556777776665555432 1 2223344456778888999865445666666666554
No 208
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.67 E-value=3.8e-05 Score=69.26 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
...+...+...+..+|+||+|+|+.+++......+.+++.. .+.|+|+|+||+||.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKH 123 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGG
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccc
Confidence 44456667778899999999999999877655566666654 36899999999999875
No 209
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.65 E-value=2.3e-05 Score=83.85 Aligned_cols=106 Identities=17% Similarity=0.228 Sum_probs=61.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc--cccCCCCceeeeEEEE--e------------------------CCcEEEE
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQ--L------------------------DKNVKLL 312 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~--~vs~~PgtTr~~q~v~--l------------------------~~~i~Li 312 (596)
..++|+++|++|+|||||+|+|++.... .....+|+|.+..... + ...+.|+
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4588999999999999999999975432 2223467777543211 1 1468999
Q ss_pred ecCCCccCCCCChHHHHHhhccccccccCCCc-----hhHH---HHHhhCC-cchhhhhhCCCCCC
Q 007611 313 DCPGVVMLKSGENDASIALRNCKRIEKLDDPV-----GPVK---EILNRCP-ANLLISLYKLPSFD 369 (596)
Q Consensus 313 DTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~-----~~v~---~iL~~~~-~~~L~~l~ki~~~~ 369 (596)
||||...- .......+..++.+..+.|.. .... .++.... .+.++++||+|...
T Consensus 89 DtPGh~~f---~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 89 DAPGHEAL---MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp ECSSHHHH---HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ECCChHHH---HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 99996421 011222233445554443332 1111 1233222 34567789998754
No 210
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.63 E-value=3.2e-05 Score=82.74 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=58.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccccc--ccCCCCceeeeEEEE--e------------------------CCcEEEE
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN--VGATPGLTRSMQEVQ--L------------------------DKNVKLL 312 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~~--vs~~PgtTr~~q~v~--l------------------------~~~i~Li 312 (596)
..++|+++|.+|+|||||+|+|++..... ....+|+|.+..... + ...+.|+
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 46899999999999999999999764322 223467777543211 1 1468999
Q ss_pred ecCCCccCCCCChHHHHHhhccccccccCCCc-----hhHH---HHHhhCC-cchhhhhhCCCCCC
Q 007611 313 DCPGVVMLKSGENDASIALRNCKRIEKLDDPV-----GPVK---EILNRCP-ANLLISLYKLPSFD 369 (596)
Q Consensus 313 DTPGI~~~~~~~~~~~~~L~~~~~i~~l~D~~-----~~v~---~iL~~~~-~~~L~~l~ki~~~~ 369 (596)
||||...-. ......+..++.+..+.|.. .... .++.... .+.++++||+|...
T Consensus 87 DtPGh~~f~---~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 87 DSPGHETLM---ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp ECSSHHHHH---HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred ECCCHHHHH---HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCC
Confidence 999953210 11111122334444443322 1111 2333333 35667889998754
No 211
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.63 E-value=5.8e-05 Score=84.07 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=75.8
Q ss_pred ceEEEeecCCCCCcchHHHhhhccc-----cccc----------cC------CCCceeeeEEEE--e-CCcEEEEecCCC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCH-----VANV----------GA------TPGLTRSMQEVQ--L-DKNVKLLDCPGV 317 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~k-----v~~v----------s~------~PgtTr~~q~v~--l-~~~i~LiDTPGI 317 (596)
--+|||||+..+|||||.-+|+-.. ...| .+ ..|+|.....+. + +..|.||||||-
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 3579999999999999999997211 0011 11 124443322222 2 568999999999
Q ss_pred ccCCCCChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 318 VMLKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 318 ~~~~~~~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
+.-. .++..+|+.|+....+.|... .+...+.....+.++.+||+|... +....+..+....+
T Consensus 111 vDF~---~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 111 QDFS---EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp GGCS---HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred HHHH---HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence 8653 457778888887776666543 234445556678888999999753 66666666655544
No 212
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.60 E-value=2.1e-05 Score=93.73 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=60.1
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcccc----c-----------cccCCCCceeeeEEEEe---CCcEEEEecCCCccCC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCHV----A-----------NVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~kv----~-----------~vs~~PgtTr~~q~v~l---~~~i~LiDTPGI~~~~ 321 (596)
+..++|+|||.+|+|||||+|+|++... + .....+|+|.+...+.+ +..+.|+||||...-.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 4568999999999999999999997410 0 01134677766543333 3579999999975320
Q ss_pred CCChHHHHHhhccccccccCCCch----hH---HHHHhhCCcc-hhhhhhCCCCCCC
Q 007611 322 SGENDASIALRNCKRIEKLDDPVG----PV---KEILNRCPAN-LLISLYKLPSFDS 370 (596)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~D~~~----~v---~~iL~~~~~~-~L~~l~ki~~~~~ 370 (596)
......+..++.+..+.|... .. ..++...+.+ .++++||+|...+
T Consensus 374 ---~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 374 ---KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp ---HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC
T ss_pred ---HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccc
Confidence 112223445555544433221 11 2233334445 4677899998754
No 213
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.58 E-value=8.9e-05 Score=69.46 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=58.0
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhC---CCCceeEEeeccCCCCHHHHHHHHHHHH-hcCC--eEEEE
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG---PDKHLVLLLNKIDLVPRESVEKWLKYLR-EELP--AVAFK 211 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~---~~K~lILVLNKiDLVp~e~l~~Wl~yLr-~~~p--tv~f~ 211 (596)
...+..+|+||+|+|+.++.+... ..+..++.... .+.|+|+|+||+||........+..++. ..+. .+.+.
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHIC 164 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEE
Confidence 356788999999999988743221 22333333211 4789999999999987544444555553 1111 12221
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|.+..
T Consensus 165 ----------------------~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 165 ----------------------ASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp ----------------------ECBTTTTBTHHHHHHHHHHHC
T ss_pred ----------------------EccCCCCcCHHHHHHHHHHHH
Confidence 345566789999998887643
No 214
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.58 E-value=9e-05 Score=79.75 Aligned_cols=60 Identities=28% Similarity=0.298 Sum_probs=39.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc----ccccCCCCceeeeEEEEe--CCcEEEEecCCCccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV----ANVGATPGLTRSMQEVQL--DKNVKLLDCPGVVML 320 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv----~~vs~~PgtTr~~q~v~l--~~~i~LiDTPGI~~~ 320 (596)
..+.|||||.+|+|||||||+|.|... ......+.+|+....+.. ..++.++|+||+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch
Confidence 567899999999999999999998431 111122233443222221 247999999999865
No 215
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.58 E-value=5.3e-05 Score=70.10 Aligned_cols=99 Identities=16% Similarity=0.019 Sum_probs=55.2
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEEEcc
Q 007611 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAFKCS 213 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~--~le~~i~~~-~~~K~lILVLNKiDLVp~-----e~l~~Wl~yLr~~~ptv~f~~~ 213 (596)
.+..+|++|+|+|+.++.+.... .+..+.... ..+.|+|+|+||+||.+. +....|.. .+..-.|
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~--- 146 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE----SWNAAFL--- 146 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH----HTTCEEE---
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH----HhCCcEE---
Confidence 45679999999999887432211 112222221 236899999999999643 33333333 2222222
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccccccceEEEeecCCCCCcch
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSS 277 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSS 277 (596)
..|+..+.|++.|+..|....... -|..++||||
T Consensus 147 --------------------~~Sa~~~~~v~~l~~~l~~~~~~~----------~~~~~~gkss 180 (181)
T 3t5g_A 147 --------------------ESSAKENQTAVDVFRRIILEAEKM----------DGACSQGKSS 180 (181)
T ss_dssp --------------------ECCTTSHHHHHHHHHHHHHHHHTC---------------CCBSC
T ss_pred --------------------EEecCCCCCHHHHHHHHHHHHHHh----------cCCcccCcCC
Confidence 234456678888888876654322 2678889987
No 216
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.57 E-value=0.00017 Score=79.11 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHH----HHHHHHhc--CC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEK----WLKYLREE--LP 206 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~----Wl~yLr~~--~p 206 (596)
..|.+.....+..+|++|+|+||.++..........++.. .+.|.|+|+||+||++.+.+.. +..++... ++
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 161 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK 161 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc
Confidence 5588888899999999999999998654333333333333 3688899999999998654333 33334332 11
Q ss_pred eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 207 tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+.| .+.|+..+.|.+.|++.|.++.+
T Consensus 162 ~~~i----------------------i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 162 NSSI----------------------IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GCCE----------------------EECCTTTCTTHHHHHHHHHHHHH
T ss_pred cceE----------------------EEEECcCCCCHHHHHHHHHHhhc
Confidence 1111 13455567889999988887653
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.55 E-value=6.8e-05 Score=80.95 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=40.1
Q ss_pred eEEEeecCCCCCcchHHHhhhcccccc---ccCCCCceeeeEEEEe-----CCcEEEEecCCCccC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHVAN---VGATPGLTRSMQEVQL-----DKNVKLLDCPGVVML 320 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv~~---vs~~PgtTr~~q~v~l-----~~~i~LiDTPGI~~~ 320 (596)
++|||||.+|+|||||||+|.|..+.. ....|++|+....+.. ...+.++|+||+...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 349999999999999999999986422 2224666665433322 236899999999754
No 218
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.54 E-value=8e-05 Score=67.81 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=58.0
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEEcc
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFKCS 213 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv~f~~~ 213 (596)
...+..+|+||+|+|+.+|.+... ..+..++... ..+.|+|+|+||+||.+......+..++...+ ..+.+.
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-- 146 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIF-- 146 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEE--
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEE--
Confidence 455678999999999999864321 1222332211 14789999999999987644445555553221 011111
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|.+..
T Consensus 147 --------------------~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 147 --------------------KTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp --------------------ECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------ECcCCCCcCHHHHHHHHHHHH
Confidence 345566788999998886644
No 219
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.53 E-value=1.6e-05 Score=76.69 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=29.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc-----ccccccCCCCce
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC-----HVANVGATPGLT 297 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~-----kv~~vs~~PgtT 297 (596)
....|+|+|++|||||||+|.|++. +++.++..|++|
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK 70 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc
Confidence 4578999999999999999999865 455666666654
No 220
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.52 E-value=0.00012 Score=68.58 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAV 208 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv 208 (596)
|.......+..+|+||+|+|+.++.+... ..+..++... ..+.|+|||+||+||.+......+...+...+ ..+
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 159 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI 159 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCe
Confidence 44455667889999999999988754221 1122222211 24789999999999986533444544443221 111
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.+ ..+|+..+.|++.|++.|.+..
T Consensus 160 ~~----------------------~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 160 CC----------------------YSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp EE----------------------EECCTTTCTTHHHHHHHHHHTC
T ss_pred eE----------------------EEEECCCCCCHHHHHHHHHHHH
Confidence 11 1345667789999999887654
No 221
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.52 E-value=0.0001 Score=66.81 Aligned_cols=96 Identities=15% Similarity=0.058 Sum_probs=58.0
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEE
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAF 210 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~-~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv~f 210 (596)
......+..+|++|+|+|+.+|.+... ..+..++.. ..++.|+|+|+||+||.+......+...+...+ ..+.+
T Consensus 59 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp HHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEE
Confidence 334457889999999999998843221 122222211 123789999999999987543444444443211 01111
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
...|+..+.|++.|++.|.+..
T Consensus 139 ----------------------~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 139 ----------------------QATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp ----------------------EECBTTTTBTHHHHHHHHHHHC
T ss_pred ----------------------EEcccCCCcCHHHHHHHHHHHH
Confidence 1345566788999998886543
No 222
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.50 E-value=5.2e-05 Score=76.92 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=36.2
Q ss_pred ceEEEeecCCCCCcchHHHhhhcccccccc-------CCCCceee------eEEEEeCCcEEEEecCCCccC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVG-------ATPGLTRS------MQEVQLDKNVKLLDCPGVVML 320 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs-------~~PgtTr~------~q~v~l~~~i~LiDTPGI~~~ 320 (596)
.++|||||.+|+|||||||+|.|......| +.+.++.. .|...+...+.++|+||+...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 368999999999999999999986543333 22333221 122223457899999999754
No 223
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.49 E-value=8.7e-05 Score=72.63 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=42.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHhhcccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v~l~~---~i~LiDTPGI~~~~~~~~~~~~~L~~~~~ 336 (596)
+.++|+|||-+||||||||+.++..... ...++.|.......+..+. .+.|+||+|-.... .-....+++++.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~---~l~~~~~~~a~~ 88 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR---SLIPSYIRDSAA 88 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG---GGHHHHHTTCSE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh---hHHHHHhccccE
Confidence 3578999999999999999999866531 2223333333333333332 46789999965331 122334555554
Q ss_pred cc
Q 007611 337 IE 338 (596)
Q Consensus 337 i~ 338 (596)
+.
T Consensus 89 ~i 90 (216)
T 4dkx_A 89 AV 90 (216)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 224
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.48 E-value=9.2e-05 Score=70.32 Aligned_cols=53 Identities=23% Similarity=0.135 Sum_probs=35.5
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
....+..+|+||+|+|+.++.+... ..+...+... ..+.|+|+|+||+||.++
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 140 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 140 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 4456788999999999988753221 1222223322 236899999999999654
No 225
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.47 E-value=5.6e-05 Score=68.51 Aligned_cols=93 Identities=16% Similarity=0.067 Sum_probs=56.2
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCH----HHHHHHHHHHHhcCCeEEEE
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR----ESVEKWLKYLREELPAVAFK 211 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~----e~l~~Wl~yLr~~~ptv~f~ 211 (596)
.....+..+|++|+|+|+.+|.+.... .+..+......+.|+++|+||+||.+. +....+...+...+..-.|
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~- 146 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF- 146 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE-
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE-
Confidence 445667899999999999988543211 122222222357899999999999764 2222233333322222222
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..|+..+.|++.|+..|.+.
T Consensus 147 ----------------------~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 147 ----------------------ETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp ----------------------ECCTTTCTTHHHHHHHHHTT
T ss_pred ----------------------EEeCCCCCCHHHHHHHHHHH
Confidence 23445677899999888764
No 226
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.45 E-value=0.00031 Score=77.05 Aligned_cols=87 Identities=24% Similarity=0.316 Sum_probs=57.5
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ 217 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~ 217 (596)
..+..+..+|+||+|+|+.+|.+.....+.+.+ .++|+|+|+||+||.+......+..++....|.+.+
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~i------- 384 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKI------- 384 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEE-------
T ss_pred HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEE-------
Confidence 345678899999999999998764333343333 378999999999997642223333333212344433
Q ss_pred hhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
|+..+.|++.|++.|...
T Consensus 385 ------------------SAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 385 ------------------SALKGEGLEKLEESIYRE 402 (482)
T ss_dssp ------------------EGGGTCCHHHHHHHHHHH
T ss_pred ------------------ECCCCCCHHHHHHHHHHH
Confidence 345677899999888764
No 227
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.44 E-value=0.00012 Score=66.35 Aligned_cols=89 Identities=19% Similarity=0.098 Sum_probs=53.9
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCeEEEEc
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPAVAFKC 212 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~e----~l~~Wl~yLr~~~ptv~f~~ 212 (596)
....+..+|++|+|+|+.++.+... ......+... .++.|+|+|+||+||.++. ....|...+ .++.+
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~---- 142 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL--GIPFI---- 142 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH--TCCEE----
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc--CCeEE----
Confidence 3456678999999999988754221 1222223322 3478999999999995433 233333222 12322
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|+..|....
T Consensus 143 ---------------------~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 143 ---------------------ESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp ---------------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------EEECCCCCCHHHHHHHHHHHH
Confidence 234456678888888876644
No 228
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.44 E-value=0.00029 Score=75.30 Aligned_cols=98 Identities=15% Similarity=0.282 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhc--
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPL-GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREE-- 204 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl-~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~----l~~Wl~yLr~~-- 204 (596)
...|.++....+..+|++|+|+||.++. .........++... ..+|+|+|+||+||++.+. .+.+..|+...
T Consensus 93 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~ 171 (410)
T 1kk1_A 93 HEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVA 171 (410)
T ss_dssp HHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT
T ss_pred hHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCc
Confidence 3567788888888999999999999874 21122222223322 3468999999999998653 34445555431
Q ss_pred --CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 205 --LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 205 --~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
+|.+ ..|+..+.|++.|++.|..+.+
T Consensus 172 ~~~~~i-------------------------~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 172 ENAPII-------------------------PISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp TTCCEE-------------------------ECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCeEE-------------------------EeeCCCCCCHHHHHHHHHHhCC
Confidence 2222 3455667889999999987654
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.43 E-value=7.4e-05 Score=82.37 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=26.1
Q ss_pred cceEEEeecCCCCCcchHHHhhh------ccccccccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK------RCHVANVGA 292 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~------~~kv~~vs~ 292 (596)
.+..|+|||.|||||||++|.|. |.+++.|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46789999999999999999999 777766554
No 230
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.42 E-value=0.0003 Score=65.66 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=57.5
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhc-C--CeEEEEcc
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREE-L--PAVAFKCS 213 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~-~--ptv~f~~~ 213 (596)
...+..+|+||+|+|+.++.+... ..+..++... ..+.|+|+|+||+||.+......+..++... + ..+.+.
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~-- 155 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ-- 155 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE--
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEE--
Confidence 456788999999999999853221 1222222210 2478999999999998643334444444321 1 111111
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
..|+..+.|++.|++.|.+...
T Consensus 156 --------------------~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 156 --------------------ACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp --------------------ECBTTTTBTHHHHHHHHHHHHC
T ss_pred --------------------EccCCCCcCHHHHHHHHHHHHH
Confidence 3455667899999988876554
No 231
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.42 E-value=0.00011 Score=68.48 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhc---CCeE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREE---LPAV 208 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~---~ptv 208 (596)
|.......+..+|+||+|+|+.+|.+... ..+..++... ..+.|+|+|+||+||.+......+..++... ...+
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHW 154 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCce
Confidence 33344566789999999999998854322 1222222211 2478999999999998764444444444321 0111
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+. ..|+..+.|++.|++.|.+...
T Consensus 155 ~~~----------------------~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 155 RIQ----------------------GCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp EEE----------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEE----------------------EeeCCCCCCHHHHHHHHHHHHH
Confidence 111 3455667889999988876544
No 232
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.42 E-value=0.0009 Score=64.85 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=58.1
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCcHH---HHHHHHHhCCCCceeEEeeccCCCCHHHH----HHHHHHHHhcC-Ce
Q 007611 136 YKELVKVIEVSDVILEVLDARDPLGTRCID---MEKMVMKAGPDKHLVLLLNKIDLVPRESV----EKWLKYLREEL-PA 207 (596)
Q Consensus 136 ~kel~kvie~sDVIleVlDARdPl~sr~~~---le~~i~~~~~~K~lILVLNKiDLVp~e~l----~~Wl~yLr~~~-pt 207 (596)
+..+......+|+||+|+|+.++.+..... +...+....++.|+|+|+||+||++...+ ...+..+...+ +.
T Consensus 99 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
T 2qu8_A 99 MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP 178 (228)
T ss_dssp HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCC
Confidence 344555678899999999999987654222 22333322237899999999999875322 12233333332 11
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
+.|. ..|+..+.|++.|+..|.....
T Consensus 179 ~~~~----------------------~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 179 IKFS----------------------SFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EEEE----------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEE----------------------EEecccCCCHHHHHHHHHHHHH
Confidence 2222 2345567788888887765543
No 233
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.41 E-value=0.00016 Score=65.38 Aligned_cols=92 Identities=14% Similarity=0.017 Sum_probs=54.1
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEcchh
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQ 215 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l-~~Wl~yLr~~~ptv~f~~~~~ 215 (596)
...+..+|++|+|+|+.+|.+... ..+..+.... ..+.|+|+|+||+||.+...+ ......+.+.++...+.
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---- 144 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFL---- 144 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEE----
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEE----
Confidence 345667999999999998753222 1222232221 347899999999999753211 11222223333222222
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..|+..+.|++.|+..|.+.
T Consensus 145 ------------------~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 145 ------------------ESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp ------------------ECBTTTTBSHHHHHHHHHHH
T ss_pred ------------------EecCCCCCCHHHHHHHHHHH
Confidence 23455678899999888653
No 234
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.40 E-value=0.00015 Score=68.23 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEEE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAFK 211 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~e~-l~~Wl~yLr~~~ptv~f~ 211 (596)
|.......+..+|+||+|+|+.++.+... ......+... ..+.|+|||+||+||.+... .......+.+.+..+.|.
T Consensus 88 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 167 (192)
T 2il1_A 88 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFC 167 (192)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEE
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEE
Confidence 33445667789999999999998764322 1122333333 23789999999999975321 111222233332222221
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..|+..+.|++.|++.|.+.
T Consensus 168 ----------------------~~SA~~g~gi~~l~~~l~~~ 187 (192)
T 2il1_A 168 ----------------------EASAKDNFNVDEIFLKLVDD 187 (192)
T ss_dssp ----------------------ECBTTTTBSHHHHHHHHHHH
T ss_pred ----------------------EEeCCCCCCHHHHHHHHHHH
Confidence 23455678889988887654
No 235
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.38 E-value=0.00013 Score=68.37 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=57.1
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh--------CCCCceeEEeeccCCCCHHHHHHHHHHHH-----hc
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA--------GPDKHLVLLLNKIDLVPRESVEKWLKYLR-----EE 204 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~--------~~~K~lILVLNKiDLVp~e~l~~Wl~yLr-----~~ 204 (596)
...+..+|+||+|+|+.++.+... ..+..++... ..+.|+|||+||+||.+......+...+. +.
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD 160 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC
Confidence 345778999999999998854221 1223322210 02789999999999998744444444332 22
Q ss_pred CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 205 ~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
... .|. ..|+..+.|++.|++.|.....
T Consensus 161 ~~~-~~~----------------------~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 161 HPF-VIF----------------------ASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp SCE-EEE----------------------ECBTTTTBTHHHHHHHHHHHHH
T ss_pred Cee-EEE----------------------EeeCCCccCHHHHHHHHHHHHH
Confidence 222 221 3445667889999888876543
No 236
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.38 E-value=0.00018 Score=67.20 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=37.1
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
.....+..+|+||+|+|+.++.+... ......+... ..+.|+|||+||+||.+.
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 44566788999999999998754211 2222223332 347899999999999865
No 237
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.37 E-value=0.00015 Score=68.46 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=53.2
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhC----CCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEEEcc
Q 007611 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG----PDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAFKCS 213 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~----~~K~lILVLNKiDLVp~e~-l~~Wl~yLr~~~ptv~f~~~ 213 (596)
..+..+|+||+|+|+.+|.+... ..+..+..... .+.|+|+|+||+||.++.. ......+.......-.|
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--- 152 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYF--- 152 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEE---
T ss_pred HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEE---
Confidence 45678999999999988754322 12222222221 3689999999999985432 22222233212211112
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|.+..
T Consensus 153 --------------------~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 153 --------------------ETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp --------------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 234456778888888876544
No 238
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.37 E-value=0.00018 Score=69.13 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=35.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHHHH
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRESV 194 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e~l 194 (596)
......+..+|++|+|+|+.+|.+.... .+...+....++.|+|||+||+||.+....
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 156 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSL 156 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchh
Confidence 3344567899999999999887543221 122334434457899999999999876543
No 239
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.36 E-value=0.00022 Score=66.40 Aligned_cols=93 Identities=16% Similarity=0.047 Sum_probs=56.7
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcHH----HHHHHHHh---CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCe-EE
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCID----MEKMVMKA---GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPA-VA 209 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~~----le~~i~~~---~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~pt-v~ 209 (596)
.....+..+|+||+|+|+.+|....+.. +..++... ..+.|+|||+||+||.+....+....++.. +.. -.
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~ 168 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-EGKFPV 168 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-TCCSCE
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHh-cCCceE
Confidence 3445788999999999998664332222 22333321 247899999999999765333333333332 222 11
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
| ..|+..+.|++.|++.|.+..
T Consensus 169 ~-----------------------~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 169 L-----------------------EAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp E-----------------------ECBGGGTBTHHHHHHHHHHHH
T ss_pred E-----------------------EEecCCCcCHHHHHHHHHHHH
Confidence 2 234556788888888776543
No 240
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.35 E-value=0.00032 Score=67.09 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhC-----CCCceeEEeeccCCCCH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG-----PDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~-----~~K~lILVLNKiDLVp~ 191 (596)
..|.......+..+|+||+|+|+.++.+. ..+..++.... .+.|+|||+||+||.+.
T Consensus 95 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred HhHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 44555667788999999999999887432 23344443321 46899999999999753
No 241
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.35 E-value=0.00012 Score=65.76 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=53.3
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh--CCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEcch
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCST 214 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~--~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~--~ptv~f~~~~ 214 (596)
...+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+||.++.........+.+. +|.+.
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----- 143 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIE----- 143 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEE-----
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEE-----
Confidence 346678999999999987743211 1122222222 1378999999999998743322222233222 23322
Q ss_pred hHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.|+..+.|.+.|+..|.+..
T Consensus 144 --------------------~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 144 --------------------TSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp --------------------ECTTTCTTHHHHHHHHHHHH
T ss_pred --------------------ecCCCCCCHHHHHHHHHHHH
Confidence 23345678888888876543
No 242
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.35 E-value=0.0005 Score=63.38 Aligned_cols=92 Identities=15% Similarity=0.009 Sum_probs=57.2
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-----CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEE
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-----GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFK 211 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~-----~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv~f~ 211 (596)
...+..+|+||+|+|+.++.+. ..+..++... ..+.|+|+|+||+||.+......+..++.... ....+
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~- 156 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDKDRM--STASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI- 156 (183)
T ss_dssp GGTTTTEEEEEEEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE-
T ss_pred HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE-
Confidence 3456789999999999988532 2233333221 25789999999999987543444444443211 11111
Q ss_pred cchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
...|+..+.|++.|++.|.+...
T Consensus 157 ---------------------~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 157 ---------------------VASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp ---------------------EEEBGGGTBTHHHHHHHHHHHHH
T ss_pred ---------------------EEccCCCCcCHHHHHHHHHHHHH
Confidence 13455677899999988876543
No 243
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.34 E-value=0.00025 Score=72.27 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=65.8
Q ss_pred cchHHHHHHHHHHhhhcCeEEEEEeC-CCCCCCCcH-HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc---
Q 007611 130 NSDRAFYKELVKVIEVSDVILEVLDA-RDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--- 204 (596)
Q Consensus 130 ~~~~~~~kel~kvie~sDVIleVlDA-RdPl~sr~~-~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~--- 204 (596)
.....|.......+..+|+||+|+|+ ..++..... .+.+.+.. .++|+|+|+||+|+++... .++.++...
T Consensus 152 ~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~ 227 (315)
T 1jwy_B 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIP 227 (315)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSC
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch--HHHHHHhCCCcc
Confidence 34566778888999999999999997 555554443 45555532 3789999999999997653 133344432
Q ss_pred --CCeEEEEcchhHHhhhcCcCcccCCCCCccccccc---ccCHHHHHHHHHhhhhc
Q 007611 205 --LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSD---CLGAETLIKLLKNYSRS 256 (596)
Q Consensus 205 --~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~---~~G~~~Ll~lLk~y~~~ 256 (596)
.+.+++. ..++.. ..|...|+..+..|.+.
T Consensus 228 ~~~~~~~v~----------------------~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 228 LTLGFIGVI----------------------NRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CTTCEEECC----------------------CCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CCCCeEEEe----------------------cCChhhhccCCCHHHHHHHHHHHHhC
Confidence 1222221 122222 57888999888887764
No 244
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.33 E-value=9.8e-05 Score=75.93 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=30.7
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccCCCC------ceeee--EEEE-----eCCcEEEEecCCCcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPG------LTRSM--QEVQ-----LDKNVKLLDCPGVVM 319 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~~Pg------tTr~~--q~v~-----l~~~i~LiDTPGI~~ 319 (596)
+++|+|||.+|||||||||.|.+......+..++ .|... ..+. ....+.++||||+..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 5889999999999999999998864333222110 12111 1111 234689999999953
No 245
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.33 E-value=0.00016 Score=75.86 Aligned_cols=94 Identities=17% Similarity=0.312 Sum_probs=58.9
Q ss_pred HHHHHHHhhhcCeEEEEEeCCC-----CCCCCcHHHHHHHHHhC---CCCceeEEeeccCCCCHH-HHHHHHHHHHhcCC
Q 007611 136 YKELVKVIEVSDVILEVLDARD-----PLGTRCIDMEKMVMKAG---PDKHLVLLLNKIDLVPRE-SVEKWLKYLREELP 206 (596)
Q Consensus 136 ~kel~kvie~sDVIleVlDARd-----Pl~sr~~~le~~i~~~~---~~K~lILVLNKiDLVp~e-~l~~Wl~yLr~~~p 206 (596)
..++.+.++.+|+||+|+|+.+ |+... ..+...+.... ..+|+|+|+||+||.+.. .+..|..++....+
T Consensus 227 ~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~ 305 (342)
T 1lnz_A 227 GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYP 305 (342)
T ss_dssp HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHhccEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCC
Confidence 3455566788999999999955 32211 12233343322 379999999999998764 34444444332111
Q ss_pred eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 207 tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
. ..+|+....|++.|+..|..+..
T Consensus 306 v-------------------------~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 306 V-------------------------FPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp B-------------------------CCCSSCCSSTTHHHHHHHHHHHT
T ss_pred E-------------------------EEEECCCCcCHHHHHHHHHHHHh
Confidence 1 24455677889999998877654
No 246
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.33 E-value=0.00016 Score=66.78 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRES 193 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e~ 193 (596)
..+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+...
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 126 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccch
Confidence 356789999999999887543222 13334444445799999999999987543
No 247
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.31 E-value=0.00018 Score=67.23 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=55.6
Q ss_pred HhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEEcchh
Q 007611 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFKCSTQ 215 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv~f~~~~~ 215 (596)
.+..+|+||+|+|+.+|.+... ..+..++... ..+.|+|+|+||+||.+......+...+...+ ..+.+
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----- 160 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI----- 160 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE-----
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE-----
Confidence 4568999999999999854221 1233332211 14789999999999987643333433332111 01111
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
...|+..+.|++.|++.|.+...
T Consensus 161 -----------------~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 161 -----------------VKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp -----------------EECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------------EEccCCCccCHHHHHHHHHHHHH
Confidence 13455667889999988876544
No 248
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.31 E-value=0.00031 Score=66.32 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=57.0
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-----CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEE
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-----GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAF 210 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~-----~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv~f 210 (596)
....+..+|+||+|+|+.+|.+. ..+..++... ..+.|+|||+||+||.+......+...+...+ ..+.+
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERV--QESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 44567899999999999988532 2222322221 13789999999999987544444544443221 01111
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
...|+..+.|++.|++.|.+.
T Consensus 168 ----------------------~~~SA~~g~gi~~l~~~l~~~ 188 (192)
T 2b6h_A 168 ----------------------QATCATQGTGLYDGLDWLSHE 188 (192)
T ss_dssp ----------------------EECBTTTTBTHHHHHHHHHHH
T ss_pred ----------------------EECcCCCcCCHHHHHHHHHHH
Confidence 134556778999999888654
No 249
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.31 E-value=0.00049 Score=73.54 Aligned_cols=98 Identities=14% Similarity=0.256 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhc--
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPL-GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREE-- 204 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl-~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e----~l~~Wl~yLr~~-- 204 (596)
...|.+.+...+..+|++|+|+||.++. ..........+.. ...+|+|+|+||+||++.+ ..+.+..++...
T Consensus 91 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (408)
T 1s0u_A 91 HETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIA 169 (408)
T ss_dssp HHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 3557777777788899999999999875 2111122222222 2346899999999999754 344455555432
Q ss_pred --CCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 205 --LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 205 --~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.|.+ ..|+..+.|++.|++.|..+.+
T Consensus 170 ~~~~~i-------------------------~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 170 ENAPII-------------------------PISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTCCEE-------------------------EC------CHHHHHHHHHHHSC
T ss_pred CCCeEE-------------------------EeeCCCCCCHHHHHHHHHHhCC
Confidence 2222 3445567889999999987654
No 250
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.29 E-value=0.00072 Score=62.75 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=54.4
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhc----CCeEEEEc
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREE----LPAVAFKC 212 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~----~ptv~f~~ 212 (596)
...+..+|+||+|+|+.++.+.... .+..++... ..+.|+|+|+||+||........+..++... ... .+
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~-- 159 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW-HI-- 159 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EE--
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCce-EE--
Confidence 4567889999999999998542211 122222211 2578999999999998643333333333211 111 11
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
...|+..+.|++.|++.|.+
T Consensus 160 --------------------~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 160 --------------------QACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp --------------------EECBTTTTBTHHHHHHHHHT
T ss_pred --------------------EEccCCCCcCHHHHHHHHHh
Confidence 13455677889999888754
No 251
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.29 E-value=0.00025 Score=66.34 Aligned_cols=95 Identities=14% Similarity=0.066 Sum_probs=56.5
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh---CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcc
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA---GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCS 213 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~---~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~ 213 (596)
.....+..+|++|+|+|+.+|.+... ..+...+... .++.|+|+|+||+||.+++........+...+..-.|
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--- 148 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFM--- 148 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEE---
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEE---
Confidence 34456778999999999988754221 1222223221 1367999999999998754322222222222222122
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
..|+..+.|++.|++.|.++..
T Consensus 149 --------------------~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 149 --------------------ETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp --------------------ECBTTTTBSHHHHHHHHHHHCS
T ss_pred --------------------EEecCCCCCHHHHHHHHHHHHh
Confidence 2344567889999998877654
No 252
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.28 E-value=4.6e-05 Score=75.45 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=30.7
Q ss_pred ccceEEEeecCCCCCcchHHHhhh-----ccccccccCCCC
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLK-----RCHVANVGATPG 295 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~-----~~kv~~vs~~Pg 295 (596)
.+...++++|.+|||||||+|.|. +.+++.+..-|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 356788999999999999999998 888887776665
No 253
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.28 E-value=0.00033 Score=66.78 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=40.0
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc---HHHHHHHHH---hCCCCceeEEeeccCCCCHHHHHHHHHHHHh
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC---IDMEKMVMK---AGPDKHLVLLLNKIDLVPRESVEKWLKYLRE 203 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~---~~le~~i~~---~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~ 203 (596)
....+..+|+||+|+|+.++..+.. ..+...+.. ...+.|+|||+||+||.+......+...+..
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~ 142 (214)
T 2fh5_B 72 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 142 (214)
T ss_dssp HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHH
Confidence 3445889999999999976321111 112222222 1346899999999999876544444444443
No 254
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.28 E-value=0.00019 Score=66.48 Aligned_cols=56 Identities=16% Similarity=0.057 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC--CCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG--PDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~--~~K~lILVLNKiDLVp 190 (596)
|.......+..+|+||+|+|+.+|.+... ..+...+.... .+.|+|+|+||+||.+
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 44456677889999999999988754322 12222233222 4789999999999976
No 255
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.28 E-value=0.00015 Score=72.39 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=23.2
Q ss_pred cceEEEeecCC---------CCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLP---------NVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~P---------NVGKSSLINsL~~~ 285 (596)
..++|+|||.| |||||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 56899999999 99999999999984
No 256
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.28 E-value=8.7e-05 Score=79.99 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=34.3
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccccccC------CCCceeeeEEEE-------eCCcEEEEecCCCccC
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGA------TPGLTRSMQEVQ-------LDKNVKLLDCPGVVML 320 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~~vs~------~PgtTr~~q~v~-------l~~~i~LiDTPGI~~~ 320 (596)
+++|+|||.+|||||||||.|++......+. .+.++. ...+. +...+.++||||+...
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~-~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ-VEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE-EEEEECC------CEEEEEEECC-----
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee-eeeEEEEEecCCcccceeeeechhhhhh
Confidence 5789999999999999999999876532220 112222 11111 1236889999999754
No 257
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.28 E-value=0.00017 Score=65.34 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=55.7
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEc
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKC 212 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp~e~--l~~Wl~yLr~~~ptv~f~~ 212 (596)
......+..+|++|+|+|+.+|.+... ..+..+.....++.|+|+|+||+||.+... ......+.. .+....|
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~-- 146 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD-DNSLLFM-- 146 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-HTTCEEE--
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHH-HcCCeEE--
Confidence 334566788999999999988753211 112223222235778999999999975321 122222222 2222222
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|.+..
T Consensus 147 ---------------------~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 147 ---------------------ETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp ---------------------ECCTTTCTTHHHHHHHHHHTS
T ss_pred ---------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 234456788999998887643
No 258
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.27 E-value=0.00018 Score=66.31 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=36.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
..+..+|++|+|+|+.+|.+.... .+...+....++.|+|+|+||+||.+..
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDK 128 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCc
Confidence 456789999999999887543221 1333444444578999999999997644
No 259
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.26 E-value=0.00016 Score=66.17 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=55.4
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCCHHH--HHHHHHHHHhc-CCeEEEEc
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES--VEKWLKYLREE-LPAVAFKC 212 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp~e~--l~~Wl~yLr~~-~ptv~f~~ 212 (596)
.+...+..+|++|+|+|+.+|.+... ..+..+......+.|+|+|+||+||.+... ...+..+.... .+.+
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---- 154 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI---- 154 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE----
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEE----
Confidence 34456788999999999988753221 122233222334789999999999975422 22233333322 2222
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|....
T Consensus 155 ---------------------~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 155 ---------------------ETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp ---------------------EEBTTTTBSHHHHHHHHHHTC
T ss_pred ---------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 233456778899998887643
No 260
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.25 E-value=0.00022 Score=65.58 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=56.0
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHH-hCCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEcc
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMK-AGPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCS 213 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~-~~~~K~lILVLNKiDLVp~e~--l~~Wl~yLr~~~ptv~f~~~ 213 (596)
.....+..+|++|+|+|+.++.+... ..+...+.. ..++.|+|+|+||+||.+... ...+..+... +..-.|
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~--- 152 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-NGLFFM--- 152 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TTCEEE---
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH-cCCEEE---
Confidence 34556788999999999988754211 112222322 234788999999999975421 2233333332 222222
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|+..|....
T Consensus 153 --------------------~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 153 --------------------ETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp --------------------ECCSSSCTTHHHHHHHHHHTC
T ss_pred --------------------EEECCCCCCHHHHHHHHHHHH
Confidence 234456788999998887644
No 261
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.25 E-value=0.00022 Score=64.66 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=56.8
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEEEcch
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAFKCST 214 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~e-~l~~Wl~yLr~~~ptv~f~~~~ 214 (596)
.....+..+|++|+|+|+.+|.+... ..+...+... .+..|+++|+||+||.+.. ........+...+..-.|
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~---- 146 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFV---- 146 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE----
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEE----
Confidence 34566788999999999988754322 1222333332 3567899999999997632 112223333333332222
Q ss_pred hHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|.+..
T Consensus 147 -------------------~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 147 -------------------ETSAKNAININELFIEISRRI 167 (170)
T ss_dssp -------------------ECBTTTTBSHHHHHHHHHHHC
T ss_pred -------------------EEeCCCCcCHHHHHHHHHHHH
Confidence 234456788999998887643
No 262
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.25 E-value=0.00013 Score=68.64 Aligned_cols=91 Identities=14% Similarity=0.028 Sum_probs=57.5
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCCH-------HHHHHHHHHHHhcCCeEE
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPR-------ESVEKWLKYLREELPAVA 209 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp~-------e~l~~Wl~yLr~~~ptv~ 209 (596)
....+..+|+||+|+|+.++.+... ..+...+....++.|+|||+||+||.+. +....|...+. ++. .
T Consensus 88 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~-~ 164 (194)
T 3reg_A 88 RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG--CVA-Y 164 (194)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT--CSC-E
T ss_pred hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC--CCE-E
Confidence 3446778999999999988754332 2233444444457899999999999752 33444433322 121 2
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
| ..|+..+.|++.|++.|.+...
T Consensus 165 ~-----------------------~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 165 I-----------------------EASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp E-----------------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred E-----------------------EeecCCCCCHHHHHHHHHHHHH
Confidence 2 2344567889999888766443
No 263
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.24 E-value=0.00055 Score=62.69 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=34.3
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
..+..+|+||+|+|+.++...........+. ..+.|+|+|+||+||.+.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~--~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMPQTVEAINHAK--AANVPIIVAINKMDKPEA 122 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCHHHHHHHHHHG--GGSCCEEEEEETTTSSCS
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHH--hCCCCEEEEEECccCCcC
Confidence 3456799999999999875433222222222 247899999999999864
No 264
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=0.00018 Score=66.12 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCHH-----HHHHHHHHHHhcCCe
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRE-----SVEKWLKYLREELPA 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~e-----~l~~Wl~yLr~~~pt 207 (596)
|.......+..+|+||+|+|+.+|.+... ......+... ..+.|+|+|+||+||.+.. ....|...+ .++.
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~ 150 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY--GLPF 150 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH--TCCE
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc--CCeE
Confidence 33445567789999999999998754322 1122223322 2478999999999998532 233333221 1232
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
+ ..|+..+.|++.|+..|.....
T Consensus 151 ~-------------------------~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 151 M-------------------------ETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp E-------------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred E-------------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2 2344567788888888766543
No 265
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.22 E-value=0.00013 Score=82.67 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=71.1
Q ss_pred EEEeecCCCCCcchHHHhhhccc-----ccccc------CC------CCceeeeEEEEe---CCcEEEEecCCCccCCCC
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCH-----VANVG------AT------PGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG 323 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~k-----v~~vs------~~------PgtTr~~q~v~l---~~~i~LiDTPGI~~~~~~ 323 (596)
+|||||+...|||||.-+|+-.. ...|. +. -|+|.....+.+ +..|.||||||-+.-
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH---
Confidence 58999999999999999997221 11111 11 144443322222 568999999999854
Q ss_pred ChHHHHHhhccccccccCCCch-------hHHHHHhhCCcchhhhhhCCCCCC-CHHHHHHHHHH
Q 007611 324 ENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVAT 380 (596)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~D~~~-------~v~~iL~~~~~~~L~~l~ki~~~~-~~~e~L~~la~ 380 (596)
..++..+|+.|+....+.|... .+...+.....+.++.+||+|... +....+..+..
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~ 145 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKE 145 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHH
Confidence 2456778888887766655432 233344444556788889998653 44455544443
No 266
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.21 E-value=0.00091 Score=63.08 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=37.5
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHH---hCCCCceeEEeeccCCCCHH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMK---AGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le~~i~~---~~~~K~lILVLNKiDLVp~e 192 (596)
...+..+|+||+|+|+.+++......+..++.. ..++.|+|||.||+||++.+
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~ 145 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDD 145 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchh
Confidence 355667999999999999732222334444443 34588999999999999853
No 267
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.20 E-value=0.00036 Score=63.87 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCc-H-HHHHHHHHhC----CCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeE
Q 007611 136 YKELVKVIEVSDVILEVLDARDPLGTRC-I-DMEKMVMKAG----PDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAV 208 (596)
Q Consensus 136 ~kel~kvie~sDVIleVlDARdPl~sr~-~-~le~~i~~~~----~~K~lILVLNKiDLVp~e~-l~~Wl~yLr~~~ptv 208 (596)
.......+..+|++|+|+|+.++.+... . .+..+..... .+.|+|+|+||+||.++.. .+....+.+.....-
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 149 (177)
T 1wms_A 70 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP 149 (177)
T ss_dssp HHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCC
T ss_pred hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCce
Confidence 3344567788999999999988754322 1 1222222111 4689999999999975432 222222333222111
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.| ..|+..+.|++.+++.|....
T Consensus 150 ~~-----------------------~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 150 YF-----------------------ETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp EE-----------------------ECCTTTCTTHHHHHHHHHHHH
T ss_pred EE-----------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 12 234456778888888776543
No 268
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.19 E-value=0.00039 Score=65.93 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=38.9
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHHHHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRESVE 195 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e~l~ 195 (596)
..+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+.....
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 148 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTR 148 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccch
Confidence 457789999999999887543221 2334444444579999999999998865433
No 269
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.19 E-value=0.00038 Score=66.14 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHH-hCCCCceeEEeeccCCCC
Q 007611 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~--~~le~~i~~-~~~~K~lILVLNKiDLVp 190 (596)
..+..+|++|+|+|+.++.+... ..+..++.. ...+.|+|+|+||+||..
T Consensus 88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 45678999999999988753221 122222221 124789999999999974
No 270
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.18 E-value=0.00039 Score=64.88 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=58.2
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEE
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAF 210 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~-~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv~f 210 (596)
......+..+|+||+|+|+.++.+... ..+..++.. ...+.|+|+|+||+||.+......+..++.... ..+.|
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQI 154 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEE
Confidence 344567789999999999988753221 122222221 124789999999999987544444443332110 01111
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
...|+..+.|++.++..|.+..
T Consensus 155 ----------------------~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 155 ----------------------QSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp ----------------------EECCTTTCTTHHHHHHHHHHTC
T ss_pred ----------------------EEccCCCCCCHHHHHHHHHHHH
Confidence 1345667889999998887643
No 271
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.16 E-value=0.00048 Score=65.47 Aligned_cols=93 Identities=14% Similarity=0.027 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCe
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPA 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~-----e~l~~Wl~yLr~~~pt 207 (596)
|.......+..+|+||+|+|+.++.+... ..+...+... ..+.|+|||+||+||.+. +.+..|.. .+..
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----~~~~ 166 (201)
T 2hup_A 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAE----HYDI 166 (201)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH----HTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHH----HcCC
Confidence 33445567889999999999988754221 1122223322 357899999999999752 23333332 2222
Q ss_pred -EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 208 -VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 208 -v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
-.| ..|+..+.|++.|+..|....
T Consensus 167 ~~~~-----------------------~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 167 LCAI-----------------------ETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp SEEE-----------------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEE-----------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 122 234456778888888876544
No 272
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.15 E-value=0.00016 Score=68.92 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=40.3
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHHHHH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRESVE 195 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e~l~ 195 (596)
....+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||++.....
T Consensus 95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 153 (204)
T 4gzl_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTI 153 (204)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhh
Confidence 33467789999999999987643322 2334444444589999999999998765433
No 273
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.14 E-value=0.00023 Score=67.79 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
..+..+|+||+|+|+.+|.+.... .+...+....++.|+|||+||+||.+..
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 129 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDK 129 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCc
Confidence 356789999999999887543221 1233344444579999999999997643
No 274
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.14 E-value=0.00029 Score=67.92 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=27.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc-----ccccccCCCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC-----HVANVGATPG 295 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~-----kv~~vs~~Pg 295 (596)
...+|+|+|.+|||||||+|.|+.. +++.++.-++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 4578999999999999999999865 3444444444
No 275
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.13 E-value=0.00041 Score=64.38 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=57.6
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchh
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ 215 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~ 215 (596)
...+..+..+|++|+|+|+.++.+.....+...+... ..+.|+|+|+||+||.+... .| ..... .
T Consensus 75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~----~~~~~-~------- 140 (172)
T 2gj8_A 75 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GM----SEVNG-H------- 140 (172)
T ss_dssp HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EE----EEETT-E-------
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hh----hhccC-C-------
Confidence 3456678999999999999999876544443444433 23689999999999854210 00 00000 0
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.....|+..+.|++.|++.|....
T Consensus 141 ---------------~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 141 ---------------ALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp ---------------EEEECCTTTCTTHHHHHHHHHHHC
T ss_pred ---------------ceEEEeCCCCCCHHHHHHHHHHHh
Confidence 112456677889999998887654
No 276
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.00057 Score=61.86 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=55.1
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCC-cHHHHHHHHHh---CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEcc
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTR-CIDMEKMVMKA---GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCS 213 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr-~~~le~~i~~~---~~~K~lILVLNKiDLVp~e~l-~~Wl~yLr~~~ptv~f~~~ 213 (596)
....+..+|++|+|+|+.+|.+.. ...+...+... .++.|+++|+||+||.+...+ ......+...+..-.|
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~--- 144 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFM--- 144 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE---
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE---
Confidence 445677899999999999875321 12222223322 146899999999999764221 1122222222222122
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
..|+..+.|++.|++.|.+...
T Consensus 145 --------------------~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 145 --------------------ETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp --------------------ECBTTTTBSHHHHHHHHHHTCC
T ss_pred --------------------EecCCCCcCHHHHHHHHHHHHh
Confidence 2344567889999999877654
No 277
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.00062 Score=63.76 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELP 206 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~-----e~l~~Wl~yLr~~~p 206 (596)
.|.......+..+|+||+|+|+.++.+... ..+...+... ..+.|+|||+||+||.+. +....|...+ .
T Consensus 84 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~ 159 (191)
T 3dz8_A 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL----G 159 (191)
T ss_dssp HCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc----C
Confidence 444556677889999999999987743211 2223333332 247899999999999643 2333333332 2
Q ss_pred eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 207 tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.-.| ..|+..+.|++.|+..|.+..
T Consensus 160 ~~~~-----------------------~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFF-----------------------EASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp CEEE-----------------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE-----------------------EEECCCCCCHHHHHHHHHHHH
Confidence 2222 234456778888888776543
No 278
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.13 E-value=0.00041 Score=64.11 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=54.4
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh--CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchh
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ 215 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~--~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~ 215 (596)
....+..+|++|+|+|+.++.+... ......+... ..+.|+|+|+||+||.+..........+...+..-.|
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----- 143 (189)
T 4dsu_A 69 RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFI----- 143 (189)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEE-----
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEE-----
Confidence 3455677999999999988743211 1122222221 2478999999999998654333333333333221112
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|+..|.+..
T Consensus 144 ------------------~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 144 ------------------ETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp ------------------ECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 233456678888887775543
No 279
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.13 E-value=0.00023 Score=67.13 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=35.7
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
.+..+|+||+|+|+.+|.+.... .+...+....++.|+|||+||+||.+.
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 56789999999999887543221 122334444458899999999999863
No 280
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.13 E-value=0.00032 Score=66.34 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=35.4
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCC
Q 007611 136 YKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLV 189 (596)
Q Consensus 136 ~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLV 189 (596)
.......+..+|+||+|+|+.++.+... ......+... ..+.|+|||+||+||.
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 3445566788999999999988754322 1122233322 2478999999999996
No 281
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.11 E-value=0.00064 Score=62.05 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=54.8
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh-CCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEc
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA-GPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKC 212 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~-~~~K~lILVLNKiDLVp~e~--l~~Wl~yLr~~~ptv~f~~ 212 (596)
......+..+|++|+|+|+.++.+.... .+...+... ..+.|+|+|+||+||.+... .+....++.. +..-.|
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~-- 155 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-NGLLFL-- 155 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCEEE--
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEE--
Confidence 3456677899999999999888543221 111223322 35789999999999975321 2222333332 222122
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
..|+..+.|++.+++.|..
T Consensus 156 ---------------------~~Sa~~~~gi~~l~~~l~~ 174 (179)
T 1z0f_A 156 ---------------------EASAKTGENVEDAFLEAAK 174 (179)
T ss_dssp ---------------------ECCTTTCTTHHHHHHHHHH
T ss_pred ---------------------EEeCCCCCCHHHHHHHHHH
Confidence 2344567788888887754
No 282
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.11 E-value=0.00035 Score=65.69 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=56.7
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh-CCCCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeEEEEcc
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA-GPDKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAVAFKCS 213 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~-~~~K~lILVLNKiDLVp~e--~l~~Wl~yLr~~~ptv~f~~~ 213 (596)
.....+..+|+||+|+|+.++.+.... .+...+... ..+.|+|+|+||+||.+.. ..+.+..++.. +..-.|
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~--- 163 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-IGAIVV--- 163 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-TTCEEE---
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEE---
Confidence 345567889999999999887532211 112222222 2478999999999997522 12333333332 222222
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+|+..+.|++.|++.|.+...
T Consensus 164 --------------------~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 164 --------------------ETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp --------------------ECBTTTTBSHHHHHHHHHHTCC
T ss_pred --------------------EEeCCCCcCHHHHHHHHHHHHH
Confidence 2344567889999998876543
No 283
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.10 E-value=0.0024 Score=69.02 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCC-------CCcHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLG-------TRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~-------sr~~~le~~i~~~~~~K~-lILVLNKiDLVp 190 (596)
.+.|.+.....+..+|++|+|+||+++.. .........+.. .+.| +|+|+||+||++
T Consensus 105 h~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 105 HKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred hHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 35678888888999999999999998753 122222222222 2556 999999999975
No 284
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.10 E-value=0.00031 Score=66.98 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHH-
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ- 217 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~- 217 (596)
..+..+|+||+|+|+.++.+.... .+...+....++.|+|+|+||+||.+......++..+.... +.. .....
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--v~~--~~~~~~ 167 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEP--VRT--DDGRAM 167 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCC--CCH--HHHHHH
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCC--CCH--HHHHHH
Confidence 356789999999999887532221 23334444445799999999999987765555443332111 000 00000
Q ss_pred hhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
....+. ......|+..+.|++.|++.|.+..
T Consensus 168 ~~~~~~------~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 168 AVRIQA------YDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp HHHTTC------SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhcCC------CEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000000 0112456677889999998887654
No 285
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.10 E-value=0.00039 Score=63.70 Aligned_cols=57 Identities=23% Similarity=0.182 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhC----CCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAG----PDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~----~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|+||+|+|+.++.+.... .+..+..... .+.|+|+|+||+||.+.
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp ------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 333444567889999999999887532221 1222222221 47899999999999643
No 286
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.09 E-value=0.0004 Score=65.42 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=54.1
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ 217 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~--~~le~~i~~-~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~ 217 (596)
..+..+|++|+|+|+.++.+... ..+..++.. ...+.|+|+|+||+||......+.+..++.... . ... .
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~-----~~~-~ 158 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-T-----TGS-Q 158 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-C-----CC---
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-c-----ccc-c
Confidence 44678999999999998853221 112222221 124789999999999976322333333333211 0 000 0
Q ss_pred hhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
.+. . .........|+..+.|++++++.|.+
T Consensus 159 --~~~-~--~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 159 --RIE-G--QRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp ---CC-S--SCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred --ccc-c--cceEEEEEeECCcCCCHHHHHHHHHh
Confidence 000 0 00001124566778899999988865
No 287
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.09 E-value=0.00049 Score=64.27 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=53.9
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEEEc
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAFKC 212 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~-----e~l~~Wl~yLr~~~ptv~f~~ 212 (596)
...+..+|+||+|+|+.++.+... ..+...+... ..+.|+|+|+||+||.+. +.+..|...+ ..-.|
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~-- 162 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL----GFEFF-- 162 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEE--
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc----CCeEE--
Confidence 345678999999999988753322 1222233332 247899999999999763 2333333322 22222
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|.+..
T Consensus 163 ---------------------~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 163 ---------------------EASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ---------------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------EEECCCCCCHHHHHHHHHHHH
Confidence 234456778899988876644
No 288
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.08 E-value=0.00067 Score=63.31 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=37.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCc-H-HHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRC-I-DMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~-~-~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
......+..+|+||+|+|+.++.+... . .+..+.... ..+.|+|+|+||+||.+.
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 344566789999999999988754322 1 222222222 347899999999999754
No 289
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.07 E-value=0.00072 Score=64.60 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=52.9
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHH-hCCCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEEEcchhHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI-DMEKMVMK-AGPDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAFKCSTQEQ 217 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~-~le~~i~~-~~~~K~lILVLNKiDLVp~e-~l~~Wl~yLr~~~ptv~f~~~~~~~ 217 (596)
..+..+|++|+|+|+.++.+.... .....+.. ...+.|+|+|+||+||.+.. ........+...+..-.|
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~------- 152 (218)
T 4djt_A 80 VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYF------- 152 (218)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEE-------
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEE-------
Confidence 346679999999999988543221 11122222 23358999999999998763 233333334333322222
Q ss_pred hhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.+|+..+.|++.|+..|....
T Consensus 153 ----------------~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 153 ----------------EISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp ----------------EEBTTTTBTTTHHHHHHHHHH
T ss_pred ----------------EEecCCCCCHHHHHHHHHHHH
Confidence 234456678888888776544
No 290
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.07 E-value=0.00063 Score=74.38 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCC----CcHHHH---HHHHHhCCCCceeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGT----RCIDME---KMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~s----r~~~le---~~i~~~~~~K~lILVLNKiDLVp 190 (596)
+.|.+.....+..+|++|+|+||.++... ...+.. .++.. .+.+++|+|+||+||++
T Consensus 122 ~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 122 RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGT
T ss_pred HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCccc
Confidence 34778888899999999999999987321 112222 22222 23467999999999997
No 291
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.07 E-value=0.00042 Score=62.62 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=35.6
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
....+..+|++|+|+|+.+|.+... ......+....++.|+++|+||+||.+.
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 3456678999999999988753222 1122222222257899999999999763
No 292
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00027 Score=66.18 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=36.9
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
..+..+|++|+|+|+.+|.+.... .+...+....++.|+|||+||+||.+..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence 456789999999999887543221 1233444444579999999999998754
No 293
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.05 E-value=0.0011 Score=71.48 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
|.+.....+..+|++|+|+||+++..........++... ..+++|+|+||+||++
T Consensus 117 f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 117 YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIKHIVVAINKMDLNG 171 (434)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCCEEEEEEECTTTTT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCCeEEEEEEcCcCCc
Confidence 566677788999999999999998643222222333322 2356999999999997
No 294
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.04 E-value=0.00045 Score=65.16 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|+||+|+|+.++.+... ..+...+... ..+.|+|||+||+||.+.
T Consensus 70 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 33445667889999999999988753211 1122223222 247899999999999763
No 295
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.03 E-value=0.00034 Score=65.86 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC----CCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG----PDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~----~~K~lILVLNKiDLVp 190 (596)
|.......+..+|+||+|+|+.+|.+... ..+...+.... .+.|+|+|+||+||.+
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 86 YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 44445566788999999999988753211 11222233222 3789999999999987
No 296
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.03 E-value=0.00034 Score=65.19 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh--CCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCe
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPA 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~--~~~K~lILVLNKiDLVp~e----~l~~Wl~yLr~~~pt 207 (596)
|.......+..+|++|+|+|+.++.+.... .+...+... ..+.|+|+|+||+||.++. .+..|...+. ++.
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~ 159 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG--IPF 159 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT--CCE
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC--CeE
Confidence 334445678899999999999887542211 111222221 1368999999999998643 3333433221 232
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
+. .|+..+.|.+.|+..|.+...
T Consensus 160 ~~-------------------------~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 160 IE-------------------------TSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp EE-------------------------CCTTTCTTHHHHHHHHHHHHH
T ss_pred EE-------------------------EeCCCCCCHHHHHHHHHHHHH
Confidence 22 234456788888887765543
No 297
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.03 E-value=0.00059 Score=63.90 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=34.8
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHH-hCCCCceeEEeeccCCCC
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMK-AGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~-~~~~K~lILVLNKiDLVp 190 (596)
...+..+|+||+|+|+.++.+... ......+.. ...+.|+|||+||+||.+
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 455678999999999988753322 112222322 234789999999999975
No 298
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.01 E-value=0.0013 Score=65.57 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=51.8
Q ss_pred hcCeEEEEEeCCCC--CCCCc--HHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHhh
Q 007611 145 VSDVILEVLDARDP--LGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRA 219 (596)
Q Consensus 145 ~sDVIleVlDARdP--l~sr~--~~le~~i~~-~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~ 219 (596)
.+|+||+|+|+.+| .+... ..+..+... ...+.|+|||+||+||.+...+.....+.......-.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~--------- 232 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVV--------- 232 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEE---------
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEE---------
Confidence 68999999999988 43221 112222221 12478999999999998866665544444432211112
Q ss_pred hcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..|+..+.|++.|+..|...
T Consensus 233 --------------e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 233 --------------ETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp --------------ECBTTTTBSHHHHHHHHHHH
T ss_pred --------------EEECCCCCCHHHHHHHHHHH
Confidence 23445677889888887653
No 299
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.01 E-value=0.00037 Score=63.81 Aligned_cols=51 Identities=16% Similarity=0.012 Sum_probs=35.2
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
..+..+|+||+|+|+.+|.+... ......+....++.|+|+|+||+||.+.
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 45678999999999988743322 1122233334457899999999999754
No 300
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.00 E-value=0.0007 Score=77.63 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=69.1
Q ss_pred eEEEeecCCCCCcchHHHhhhccc-----cccccC------------CCCceeeeEEEEe----------CCcEEEEecC
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCH-----VANVGA------------TPGLTRSMQEVQL----------DKNVKLLDCP 315 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~k-----v~~vs~------------~PgtTr~~q~v~l----------~~~i~LiDTP 315 (596)
-+|+|||+...|||||.-+|+-.. ...|.. .-|+|.....+.+ +..|.|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 479999999999999999997321 111111 1244443322222 2368999999
Q ss_pred CCccCCCCChHHHHHhhccccccccCCCch----hHHHHHh---hCCcchhhhhhCCCCCC-CHHHHHHHHHHHhc
Q 007611 316 GVVMLKSGENDASIALRNCKRIEKLDDPVG----PVKEILN---RCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (596)
Q Consensus 316 GI~~~~~~~~~~~~~L~~~~~i~~l~D~~~----~v~~iL~---~~~~~~L~~l~ki~~~~-~~~e~L~~la~~~g 383 (596)
|-+.- ..++..+|+.|+....+.|.+. .-..+++ +...+.++.+||+|... +....+..+....+
T Consensus 94 GHvDF---~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 94 GHVDF---TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp SCTTC---HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred CCccc---HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 99865 2456678888777666655542 1222333 33456788899999753 55555555544433
No 301
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.00 E-value=0.00054 Score=63.33 Aligned_cols=57 Identities=18% Similarity=0.036 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHH-hCCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMK-AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~-~~~~K~lILVLNKiDLVp~ 191 (596)
|.......+..+|+||+|+|+.+|.+.... .....+.. ...+.|+|+|+||+||.+.
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 344456678899999999999887543221 11122222 2357899999999999753
No 302
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.99 E-value=0.00088 Score=61.26 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=53.4
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEcchhH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQE 216 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l-~~Wl~yLr~~~ptv~f~~~~~~ 216 (596)
..+..+|++|+|+|+.++.+... ..+..++... ..+.|+|+|+||+||.+...+ ......+...+..-.|
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~------ 149 (181)
T 2fn4_A 76 QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF------ 149 (181)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE------
T ss_pred HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEE------
Confidence 45667999999999988753221 1222332322 347899999999999764221 1122222222222222
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|....
T Consensus 150 -----------------~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 150 -----------------EASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp -----------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------EecCCCCCCHHHHHHHHHHHH
Confidence 234456778888888876544
No 303
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.99 E-value=0.0011 Score=60.90 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=31.6
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHH---HHHHh----CCCCceeEEeeccCC
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEK---MVMKA----GPDKHLVLLLNKIDL 188 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~---~i~~~----~~~K~lILVLNKiDL 188 (596)
.+..+|+||+|+|+.+|.+... +.. .+... .++.|+|||.||+||
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSFQA--VSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHHHH--HHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred HHHhCCEEEEEEECcCHHHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 4567999999999988864322 222 23221 247899999999999
No 304
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.98 E-value=0.00086 Score=69.61 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCC---eE
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREELP---AV 208 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~p---tv 208 (596)
|.......+..+|+||+|+|+.++.+... ..+..++... .++.|+|||+||+||.+......+...+...+. .+
T Consensus 222 ~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 301 (329)
T 3o47_A 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW 301 (329)
T ss_dssp -CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCE
T ss_pred HHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCC
Confidence 33345566788999999999988754322 1222332211 137899999999999876555555555543321 11
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.| ..+|+..+.|++.|++.|....
T Consensus 302 ~~----------------------~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 302 YI----------------------QATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp EE----------------------EECBTTTTBTHHHHHHHHHHHH
T ss_pred EE----------------------EEEECCCCcCHHHHHHHHHHHH
Confidence 12 1345667889999998887644
No 305
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.98 E-value=0.0006 Score=63.78 Aligned_cols=53 Identities=17% Similarity=-0.005 Sum_probs=35.7
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
....+..+|+||+|+|+.+|.+... ......+... ..+.|+|+|+||+||.+.
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 3456778999999999988754221 1122223222 247899999999999763
No 306
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.04 E-value=0.00011 Score=69.66 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=39.0
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHHH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRES 193 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e~ 193 (596)
.....+..+|++|+|+|+.+|.+.... .+...+....++.|+|+|+||+||.+...
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~ 151 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
Confidence 334567789999999999988654332 23333333334789999999999987643
No 307
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.98 E-value=0.00028 Score=67.96 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
...+..+|+||+|+|+.++.+... ..+...+....++.|+|||.||+||.+
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 345678999999999998854332 123334444446789999999999964
No 308
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.97 E-value=0.00093 Score=60.41 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=50.1
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh--CCCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEEEcch
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAFKCST 214 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~--~~~K~lILVLNKiDLVp~e-~l~~Wl~yLr~~~ptv~f~~~~ 214 (596)
....+..+|++|+|+|+.+|.+... ......+... ..+.|+|+|+||+||.+.. ........+...+..-.|
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---- 141 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFI---- 141 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEE----
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEE----
Confidence 3445678999999999998854221 1111222222 2478999999999998642 222222333333332222
Q ss_pred hHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|.+..
T Consensus 142 -------------------~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 142 -------------------ETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp -------------------ECBGGGTBSHHHHHHHHHHHH
T ss_pred -------------------EeccCCCCCHHHHHHHHHHHH
Confidence 234456788999988876543
No 309
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.97 E-value=0.0024 Score=66.81 Aligned_cols=88 Identities=16% Similarity=0.277 Sum_probs=57.8
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHH---HHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEcchhHH
Q 007611 142 VIEVSDVILEVLDARDPLGTRCID---MEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKCSTQEQ 217 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~---le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~-~ptv~f~~~~~~~ 217 (596)
....+|++|+|+|+.++.+..... +...+....+++|+|+|+||+|+.+...+..+..++... .|.+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------- 313 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPI--------- 313 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCE---------
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeE---------
Confidence 334699999999998765432222 223333322379999999999999887666666655432 2222
Q ss_pred hhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.+|+..+.|++.|++.|....
T Consensus 314 ----------------~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 314 ----------------KISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ----------------ECBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------EEeCCCCcCHHHHHHHHHHHH
Confidence 234456788999988876654
No 310
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.97 E-value=0.0013 Score=70.05 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp 190 (596)
|.+.....+..+|++|+|+||.++...........+.. .+.| +|+|+||+||++
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccC
Confidence 66778888999999999999998864333333333333 2567 889999999995
No 311
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.96 E-value=0.00063 Score=62.58 Aligned_cols=93 Identities=13% Similarity=-0.007 Sum_probs=55.3
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhC-CCCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeEEEEc
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG-PDKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAVAFKC 212 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~-~~K~lILVLNKiDLVp~e--~l~~Wl~yLr~~~ptv~f~~ 212 (596)
.....+..+|++|+|+|+.+|.+... ..+..+..... .+.|+|+|+||+||.+.. ....+..++.. +..-.|
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~-- 158 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-WNVNYV-- 158 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEE--
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cCCeEE--
Confidence 34556778999999999988753211 11222222222 378999999999997632 12333333332 222222
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|.+..
T Consensus 159 ---------------------~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 159 ---------------------ETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp ---------------------ECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------------------EeCCCCCCCHHHHHHHHHHHH
Confidence 234456678888888876544
No 312
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.96 E-value=0.00096 Score=61.93 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=53.6
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhCCCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEEEcchh
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAFKCSTQ 215 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~~~K~lILVLNKiDLVp~e-~l~~Wl~yLr~~~ptv~f~~~~~ 215 (596)
.....+..+|++|+|+|+.+|.+... ..+...+... .+.|+|+|+||+|+.... .......++... ..-.|
T Consensus 109 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~----- 181 (208)
T 3clv_A 109 IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS-SNYIIILVANKIDKNKFQVDILEVQKYAQDN-NLLFI----- 181 (208)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCCEEEEEEECTTCC-CCSCHHHHHHHHHHT-TCEEE-----
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh-CCCcEEEEEECCCcccccCCHHHHHHHHHHc-CCcEE-----
Confidence 34556788999999999998854221 1111223222 248999999999943222 233344444432 22112
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|++.|++.|....
T Consensus 182 ------------------~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 182 ------------------QTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp ------------------EECTTTCTTHHHHHHHHHHHH
T ss_pred ------------------EEecCCCCCHHHHHHHHHHHH
Confidence 234456678888888876543
No 313
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.95 E-value=0.0011 Score=61.28 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=53.8
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHH-hCCCCceeEEeeccCCCC-----HHHHHHHHHHHHhcCCeEEE
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVP-----RESVEKWLKYLREELPAVAF 210 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~-~~~~K~lILVLNKiDLVp-----~e~l~~Wl~yLr~~~ptv~f 210 (596)
....+..+|++|+|+|+.+|.+... ..+..+... ...+.|+|+|+||+||.+ .+....|...+. .+.+.
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~- 159 (183)
T 3kkq_A 83 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN--IPYIE- 159 (183)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT--CCEEE-
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC--CeEEE-
Confidence 3445677999999999998743221 122222221 234789999999999975 233444444332 33332
Q ss_pred EcchhHHhhhcCcCcccCCCCCcccccc-cccCHHHHHHHHHhh
Q 007611 211 KCSTQEQRANLGWKSSKTAKPSNILQTS-DCLGAETLIKLLKNY 253 (596)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~~~G~~~Ll~lLk~y 253 (596)
.|+. .+.|++.++..|.+.
T Consensus 160 ------------------------~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 160 ------------------------TSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp ------------------------EBCSSSCBSHHHHHHHHHHH
T ss_pred ------------------------eccCCCCCCHHHHHHHHHHH
Confidence 2334 567888888887654
No 314
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.93 E-value=0.00059 Score=62.48 Aligned_cols=89 Identities=17% Similarity=0.074 Sum_probs=52.3
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh---CCCCc-eeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEE
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA---GPDKH-LVLLLNKIDLVPR-----ESVEKWLKYLREELPAVA 209 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~---~~~K~-lILVLNKiDLVp~-----e~l~~Wl~yLr~~~ptv~ 209 (596)
...+..+|++|+|+|+.+|.+.... .+...+... ..+.| +|||+||+||.+. +....|...+. ++.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~-- 149 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG--FSS-- 149 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT--CEE--
T ss_pred hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC--CcE--
Confidence 3457789999999999887543221 122222221 12456 7899999999753 33333433221 222
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
| ..|+..+.|++.|+..|.+...
T Consensus 150 ~-----------------------~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 150 H-----------------------FVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp E-----------------------EECTTTCTTHHHHHHHHHHHHT
T ss_pred E-----------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2 2334566788999888876443
No 315
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.91 E-value=0.0015 Score=58.64 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=36.5
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhC-CCCceeEEeeccCCCCH
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG-PDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~-~~K~lILVLNKiDLVp~ 191 (596)
......+..+|++|+|+|+.+|.+... ..+..+..... .+.|+++|+||+||.+.
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 344566788999999999998754221 11222222222 37899999999999753
No 316
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.90 E-value=0.0014 Score=59.49 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=52.1
Q ss_pred HhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhC-CCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEEEcchhHH
Q 007611 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG-PDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAFKCSTQEQ 217 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~--~~le~~i~~~~-~~K~lILVLNKiDLVp~e-~l~~Wl~yLr~~~ptv~f~~~~~~~ 217 (596)
.+..+|++|+|+|+.+|.+... ..+..+..... .+.|+|+|+||+||.+.. ........+...+..-.|
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~------- 144 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI------- 144 (169)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE-------
T ss_pred hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEE-------
Confidence 3567999999999988753222 22333333221 278999999999997432 111222223333333222
Q ss_pred hhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..|+..+.|++.++..|...
T Consensus 145 ----------------~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 145 ----------------ETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp ----------------ECBTTTTBSHHHHHHHHHHH
T ss_pred ----------------EecCccCCCHHHHHHHHHHH
Confidence 23445677888888877654
No 317
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.88 E-value=0.00074 Score=62.36 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=49.5
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcHHHHHH---HHH-hCCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEE
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMK-AGPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVA 209 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~~le~~---i~~-~~~~K~lILVLNKiDLVp~-----e~l~~Wl~yLr~~~ptv~ 209 (596)
....+..+|+||+|+|+.+|.+.. .+..+ +.. ...+.|+|||+||+||.+. +.+..|..-+. ++ .
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~--~ 147 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG--IK--F 147 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT--CE--E
T ss_pred HHHHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC--Ce--E
Confidence 345577899999999998875421 22222 222 2347899999999999752 33444443221 22 2
Q ss_pred EEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
| ..|+..+.|++.|+..|....
T Consensus 148 ~-----------------------~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 148 M-----------------------ETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp E-----------------------ECCC---CCHHHHHHHHHHHH
T ss_pred E-----------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 2 234456778888887775543
No 318
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.88 E-value=0.002 Score=70.55 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=57.7
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEcchh
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCSTQ 215 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~--~ptv~f~~~~~ 215 (596)
....+..+|+||+|+|+.+|.+.... ....++... .++|+|+|+||+||.+...+.. ..|.+. .+.+
T Consensus 306 ~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i------- 375 (476)
T 3gee_A 306 SRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADALI--RAIADGTGTEVI------- 375 (476)
T ss_dssp --CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEE-------
T ss_pred HHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccchhH--HHHHhcCCCceE-------
Confidence 34567889999999999998764221 233344333 3799999999999998765432 223322 2332
Q ss_pred HHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.+|+..+.|++.|++.|....
T Consensus 376 ------------------~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 376 ------------------GISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp ------------------ECBTTTTBSHHHHHHHHTHHH
T ss_pred ------------------EEEECCCCCHHHHHHHHHHHH
Confidence 234566789999999887654
No 319
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.88 E-value=0.0009 Score=63.33 Aligned_cols=52 Identities=21% Similarity=0.109 Sum_probs=34.7
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHH-hCCCCceeEEeeccCCCCH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMK-AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~-~~~~K~lILVLNKiDLVp~ 191 (596)
...+..+|+||+|+|+.+|.+.... .....+.. ...+.|+|||+||+||.+.
T Consensus 75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 3456789999999999887532211 11122222 2346899999999999863
No 320
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.85 E-value=0.0013 Score=72.90 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHHH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYLR 202 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e---~l~~Wl~yLr 202 (596)
|..+....+..+|++|+|+|+.++.......+...+.. .+.|+|+|+||+|+.... .+..+...|.
T Consensus 95 f~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~ 163 (528)
T 3tr5_A 95 FTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDTRPSIELLDEIESILR 163 (528)
T ss_dssp CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHHHhhC
Confidence 44567778899999999999999876555555555443 378999999999997543 3444444443
No 321
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.00086 Score=62.87 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=32.5
Q ss_pred HhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhC--CCCceeEEeeccCCC
Q 007611 142 VIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG--PDKHLVLLLNKIDLV 189 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~-~~le~~i~~~~--~~K~lILVLNKiDLV 189 (596)
.+..+|++|+|+|+.++.+... ..+...+.... .+.|+|||.||+||.
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5667999999999998754322 22222233221 367999999999994
No 322
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.82 E-value=0.00037 Score=75.34 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.0
Q ss_pred ceEEEeecCCCCCcchHHHhhhc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
+..|+|+|.|||||||+++.|.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999985
No 323
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.81 E-value=0.00035 Score=77.55 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=70.4
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH--HHHHHHHHHH---hcC-CeEEEEcc
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE--SVEKWLKYLR---EEL-PAVAFKCS 213 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e--~l~~Wl~yLr---~~~-ptv~f~~~ 213 (596)
...+..+|++|+|+||.++...........+. ..+.|+|+|+||+||.+.. .+..++..+. ..+ ..+.
T Consensus 70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~---- 143 (537)
T 3izy_P 70 ARGTQVTDIVILVVAADDGVMKQTVESIQHAK--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQ---- 143 (537)
T ss_dssp BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHH--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEE----
T ss_pred HHHHccCCEEEEEEECCCCccHHHHHHHHHHH--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCce----
Confidence 34567799999999999976543333333333 2478999999999997532 1111221110 001 0111
Q ss_pred hhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhccc--------------------cccceEEEeecCCCC
Q 007611 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE--------------------IKKSITVGVIGLPNV 273 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~~~--------------------~k~~i~V~vVG~PNV 273 (596)
....|+..+.|.+.|++.|..++.... -...+.+++|+.+++
T Consensus 144 ------------------iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l 205 (537)
T 3izy_P 144 ------------------AVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTL 205 (537)
T ss_dssp ------------------ECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECC
T ss_pred ------------------EEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEE
Confidence 225667788899999988876543110 012456688888888
Q ss_pred CcchHH
Q 007611 274 GKSSLI 279 (596)
Q Consensus 274 GKSSLI 279 (596)
++++.+
T Consensus 206 ~~Gd~v 211 (537)
T 3izy_P 206 RKGSIL 211 (537)
T ss_dssp SSEEEE
T ss_pred EcCCEE
Confidence 888765
No 324
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.81 E-value=0.0007 Score=60.79 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=36.1
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
.....+..+|++++|+|+.+|.+... ..+..++... ..+.|+|+|+||+||.+.
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 34456788999999999998754221 1122222222 247899999999999754
No 325
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.77 E-value=0.0015 Score=61.93 Aligned_cols=54 Identities=20% Similarity=0.095 Sum_probs=36.2
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
.....+..+|+||+|+|+.++.+.... .+..+......+.|+|||+||+||.+.
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 345567889999999999887543221 122222222357899999999999653
No 326
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.77 E-value=0.00019 Score=72.62 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=54.6
Q ss_pred hhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhcCCeEEEEcchhHHh
Q 007611 143 IEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREELPAVAFKCSTQEQR 218 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~----l~~Wl~yLr~~~ptv~f~~~~~~~~ 218 (596)
...+|+||+|+|+.++. +...+...+... +.|+|+|+||+|+++... +..|...+. .|.+.
T Consensus 83 ~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--~~~i~--------- 147 (274)
T 3i8s_A 83 SGDADLLINVVDASNLE--RNLYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLG--CPVIP--------- 147 (274)
T ss_dssp HTCCSEEEEEEEGGGHH--HHHHHHHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHT--SCEEE---------
T ss_pred hcCCCEEEEEecCCChH--HHHHHHHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcC--CCEEE---------
Confidence 47899999999998742 333444444443 799999999999976542 333333332 34333
Q ss_pred hhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 219 ANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
+|+..+.|.+.|++.|.....
T Consensus 148 ----------------~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 148 ----------------LVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ----------------CCCGGGHHHHHHHHHHHTCCC
T ss_pred ----------------EEcCCCCCHHHHHHHHHHHHh
Confidence 344567889999998877544
No 327
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.77 E-value=0.00021 Score=71.67 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=52.8
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEcchhHHhhhc
Q 007611 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCSTQEQRANL 221 (596)
Q Consensus 144 e~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~--~ptv~f~~~~~~~~~~~ 221 (596)
..+|+||.|+|+.++ .++..+...+.. .+.|+|+|+||+|+++...+......|.+. .|.++
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~------------ 145 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIP------------ 145 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEE------------
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEE------------
Confidence 789999999999874 233334444432 379999999999998654221112223322 33332
Q ss_pred CcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 222 ~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
+|+..+.|.+.|++.|..+
T Consensus 146 -------------~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 -------------IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -------------CBGGGTBSHHHHHHHHHTC
T ss_pred -------------EECCCCCCHHHHHHHHHhh
Confidence 3455678999999999774
No 328
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.74 E-value=0.0013 Score=61.22 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=35.3
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
..+..+|++|+|+|+.++.+.... .+...+....++.|+|||+||+||.+
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 356789999999999887543221 12233444445789999999999975
No 329
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.0014 Score=61.55 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=35.0
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHH-h-CCCCceeEEeeccCCCC
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMK-A-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~-~-~~~K~lILVLNKiDLVp 190 (596)
....+..+|+||+|+|+.+|.+.... .....+.. . ..+.|+|||+||+||.+
T Consensus 92 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 92 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred hhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 34556789999999999987543221 11222222 1 24789999999999976
No 330
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.73 E-value=0.0029 Score=71.11 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcch
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCST 214 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~ 214 (596)
|..++...+..+|.+|+|+||.++.............. .+.|+|+|+||+||.... .......+...+.. .+
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~---~~-- 157 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGL---DP-- 157 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCC---CG--
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHhhCC---Cc--
Confidence 66778888999999999999998865333222222222 478999999999998643 23334444443321 00
Q ss_pred hHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
......|+..+.|++.|++.|-++.+.
T Consensus 158 ---------------~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 158 ---------------EEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ---------------GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ---------------ccEEEEEeecCCCchHHHHHHHHhccc
Confidence 012245666788999999998877654
No 331
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.72 E-value=0.00076 Score=64.80 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=36.4
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
..+..+|+||+|+|+.++.+... ......+....++.|+|||+||+||.+..
T Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 83 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCS
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccc
Confidence 35568999999999998754322 12233333334578999999999998654
No 332
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.70 E-value=0.0036 Score=66.06 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=57.5
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCcHH---HHHHHHHhC-CCCceeEEeeccCCCCHHH--HHHHHHHH-Hhc-CCeE
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRCID---MEKMVMKAG-PDKHLVLLLNKIDLVPRES--VEKWLKYL-REE-LPAV 208 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~~~---le~~i~~~~-~~K~lILVLNKiDLVp~e~--l~~Wl~yL-r~~-~ptv 208 (596)
+.....+..+|+||+|+|+.+|....... +.+.+...+ .++|+|+|+||+|+++... ....+..+ +.. .+..
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 44455678999999999998774111111 233333322 4789999999999987431 11111111 222 2221
Q ss_pred EEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+. ++|+.++.|.+.|++.|..+..
T Consensus 329 ~~~----------------------~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DVI----------------------PISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEE----------------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred cEE----------------------EEECCCCcCHHHHHHHHHHHhc
Confidence 111 3455678899999999877654
No 333
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.67 E-value=0.00092 Score=60.56 Aligned_cols=50 Identities=24% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHHHH---HHH-hCCCCceeEEeeccCCCCH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMK-AGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le~~---i~~-~~~~K~lILVLNKiDLVp~ 191 (596)
...+..+|++|+|+|+.++.+.. .+..+ +.. ...+.|+++|+||+||.+.
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDEDSFQ--KVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 34567899999999998875321 22222 222 2246899999999999753
No 334
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.66 E-value=0.005 Score=65.08 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCce-eEEee-ccCCCCHHHHHHHHHHHHhcC-----Ce
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHL-VLLLN-KIDLVPRESVEKWLKYLREEL-----PA 207 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~l-ILVLN-KiDLVp~e~l~~Wl~yLr~~~-----pt 207 (596)
|.+++...+..+|++|+|+| .............++.. .+.|. |+|+| |+|| +.+.+......++..+ ..
T Consensus 73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~ 148 (370)
T 2elf_A 73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQD 148 (370)
T ss_dssp CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTT
T ss_pred HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCc
Confidence 67788888899999999999 54432212222223332 25666 99999 9999 7654433223333221 11
Q ss_pred EEEEcchhHHhhhcCcCcccCCCCCcc--ccccc---ccCHHHHHHHHHhhhh
Q 007611 208 VAFKCSTQEQRANLGWKSSKTAKPSNI--LQTSD---CLGAETLIKLLKNYSR 255 (596)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~--~s~s~---~~G~~~Ll~lLk~y~~ 255 (596)
++|. + .|+.. ..|.+.|++.|..+.+
T Consensus 149 ~~ii----------------------~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 149 WECI----------------------SLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CEEE----------------------ECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred eEEE----------------------ecccccccCcCCCCHHHHHHHHHhhcc
Confidence 2221 2 34455 7788888888876654
No 335
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.65 E-value=0.012 Score=55.54 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=57.7
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhcCCeEEEEcchhHHhh
Q 007611 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREELPAVAFKCSTQEQRA 219 (596)
Q Consensus 144 e~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~----l~~Wl~yLr~~~ptv~f~~~~~~~~~ 219 (596)
..+|.++.|.|+.++.......+.+++.. .+.|+++|+||+|+.+... +......+.+....+.+.
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~-------- 176 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE-------- 176 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE--------
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE--------
Confidence 57899999999999875433345555543 3688999999999998642 223333333221122221
Q ss_pred hcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
+.|+.+..|.+.|++.|.++...
T Consensus 177 --------------~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 177 --------------TFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp --------------ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred --------------EEeecCCCCHHHHHHHHHHHHhh
Confidence 44566788999999999887543
No 336
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.65 E-value=0.00075 Score=73.61 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=56.0
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHh
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQR 218 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~ 218 (596)
.+..+..+|+||+|+|+.+|+......+.+.+ ..+|+|+|+||+||.+...+.. +..+....+.+
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l----~~~piivV~NK~Dl~~~~~~~~-~~~~~~~~~~i---------- 361 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATGWTTGDQEIYEQV----KHRPLILVMNKIDLVEKQLITS-LEYPENITQIV---------- 361 (462)
T ss_dssp --CCCCSCSEEEEEEETTTCSCHHHHHHHHHH----TTSCEEEEEECTTSSCGGGSTT-CCCCTTCCCEE----------
T ss_pred HhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc----cCCcEEEEEECCCCCcchhhHH-HHHhccCCcEE----------
Confidence 44567789999999999998765443343333 3589999999999998654320 00000111222
Q ss_pred hhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 219 ANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+|+..+.|.+.|++.|.....
T Consensus 362 ---------------~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 362 ---------------HTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp ---------------EEBTTTTBSHHHHHHHHHHHHT
T ss_pred ---------------EEECCCCCCHHHHHHHHHHHHh
Confidence 3455677899999999877543
No 337
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.64 E-value=0.00057 Score=65.48 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=35.4
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
..+..+|+||+|+|+.++.+.... .+...+....++.|+|||+||+||.+
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 356789999999999887543221 12233444445789999999999975
No 338
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0011 Score=63.23 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCc-HHHHHHHHHh-CCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~-~~le~~i~~~-~~~K~lILVLNKiDLVp 190 (596)
|.......+..+|+||+|+|+.++.+... ......+... ..+.|+|||+||+||..
T Consensus 88 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 44445567889999999999988754322 1122223222 34688999999999974
No 339
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.62 E-value=0.0043 Score=58.11 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=35.7
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
.....+..+|++|+|+|+.++.+... ..+..+.... ..+.|+|||+||+||.+.
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 78 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 34456778999999999988753211 1122222222 137899999999999763
No 340
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.61 E-value=0.0014 Score=65.95 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=36.2
Q ss_pred cCeEEEEEeC-CCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHH
Q 007611 146 SDVILEVLDA-RDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLR 202 (596)
Q Consensus 146 sDVIleVlDA-RdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr 202 (596)
+|++|+++|. +.++......+.+.+. .++|+|+|+||+|+++...+......+.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~---~~~pvi~V~nK~D~~~~~e~~~~~~~i~ 170 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIM 170 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHT---TTSCEEEEESSGGGSCHHHHHHHHHHHH
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHh---ccCCEEEEEeccCCCCHHHHHHHHHHHH
Confidence 7788888854 4455444444444443 3799999999999998876655544443
No 341
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.61 E-value=0.0016 Score=75.07 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=41.9
Q ss_pred HHHHHHHHh-hhcCeEEEEEeCCCCCCCCcH-HHHHHHHHhCCCCceeEEeeccCCCCHHH
Q 007611 135 FYKELVKVI-EVSDVILEVLDARDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPRES 193 (596)
Q Consensus 135 ~~kel~kvi-e~sDVIleVlDARdPl~sr~~-~le~~i~~~~~~K~lILVLNKiDLVp~e~ 193 (596)
+...+...+ ..+|+||.|+||+.+++.... .+.+.+.. .++|+|+|+||+|++++..
T Consensus 176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECTTSSCTTC
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCcccCCcch
Confidence 334444455 579999999999998876554 45555543 3789999999999998653
No 342
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.60 E-value=0.0017 Score=59.13 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=32.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh--CCCCceeEEeeccCCCCH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~--~~~K~lILVLNKiDLVp~ 191 (596)
..+..+|++|+|+|+.+|.+.... .+...+... ..+.|+|+|+||+||.+.
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 446679999999999887542211 122223322 237899999999999764
No 343
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.59 E-value=0.0044 Score=65.85 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp 190 (596)
..|.+.....+..+|++|+|+||.++...........+.. .+.| +|+|+||+||++
T Consensus 77 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 77 ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCS
T ss_pred HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCC
Confidence 4577788888999999999999998754332333333333 2567 689999999995
No 344
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0011 Score=63.87 Aligned_cols=89 Identities=13% Similarity=-0.004 Sum_probs=50.6
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEEEc
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAFKC 212 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~-~~~K~lILVLNKiDLVp~-----e~l~~Wl~yLr~~~ptv~f~~ 212 (596)
...+..+|+||+|+|+.++.+.... .+...+... ..+.|+|||+||+||.+. +....|. ..+....|
T Consensus 80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~-- 153 (223)
T 3cpj_B 80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFA----QENQLLFT-- 153 (223)
T ss_dssp GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHH----HHTTCEEE--
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCEEE--
Confidence 3456789999999999887543221 111222222 347899999999999753 2233332 22222122
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+|+..+.|++.|+..|.....
T Consensus 154 ---------------------~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 154 ---------------------ETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp ---------------------ECCCC-CCCHHHHHHHHHHHHT
T ss_pred ---------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2344567889999888765543
No 345
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.57 E-value=0.0019 Score=71.93 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhC-CCCceeEEeeccCCCCHHHHHHHHHHHH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG-PDKHLVLLLNKIDLVPRESVEKWLKYLR 202 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~-~~K~lILVLNKiDLVp~e~l~~Wl~yLr 202 (596)
|.......+..+|+||+|+|+..+-.+ .....++.... .+.|+|+|+||+|+++.+.+...+..+.
T Consensus 178 f~~~~~~~l~~aD~il~VvDa~~~~~~--~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 178 FPAVLRWFAERVDLIILLFDAHKLEIS--DEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTSCCCC--HHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEEeCCcCCCC--HHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 556677788999999999999875222 22233333221 2578999999999999887777666654
No 346
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.54 E-value=0.0008 Score=68.39 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=37.8
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCcH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~~--~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
....+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+..
T Consensus 220 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 275 (332)
T 2wkq_A 220 RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 275 (332)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCH
T ss_pred HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccccc
Confidence 33457789999999999887543221 1223444444589999999999997653
No 347
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.54 E-value=0.0016 Score=71.00 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=57.8
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEEc
Q 007611 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFKC 212 (596)
Q Consensus 139 l~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~-~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~---ptv~f~~ 212 (596)
....+..+|+||+|+|+.++.+... ..+..++... ..++|+|||+||+||.+..........+...+ ....+
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-- 460 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV-- 460 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEE--
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEE--
Confidence 4457789999999999998743211 1222332211 13789999999999976533333333332211 01111
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
...|+..+.|++.|++.|.....
T Consensus 461 --------------------~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 461 --------------------QPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp --------------------EECBTTTTBTHHHHHHHHHHHCC
T ss_pred --------------------EEEECCCCCCHHHHHHHHHHHHH
Confidence 13566778899999999876543
No 348
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.54 E-value=0.0048 Score=64.31 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=59.4
Q ss_pred EEEeecCCCCCcchHHHhhhcccccc----ccCCCCceeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHhhccccccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCHVAN----VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~kv~~----vs~~PgtTr~~q~v~l~~~i~LiDTPGI~~~~~~~~~~~~~L~~~~~i~~ 339 (596)
+|.++|..|||||||++.+.+..... .+++-|+... .+...-.+.|+||||-..-....-.....++++..+..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~--~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il 78 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE--HFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVY 78 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE--EECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE--EEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence 48899999999999999887653222 2233333221 12122468999999986442111122345677777665
Q ss_pred cCCCchh-------HHHHHhh----CC-cchhhhhhCCCCCCC
Q 007611 340 LDDPVGP-------VKEILNR----CP-ANLLISLYKLPSFDS 370 (596)
Q Consensus 340 l~D~~~~-------v~~iL~~----~~-~~~L~~l~ki~~~~~ 370 (596)
+-|.... +..++.. ++ .+.+++.||+|....
T Consensus 79 V~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 79 VIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp ECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred EEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 5543321 1122221 22 355667789987654
No 349
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.53 E-value=0.001 Score=66.72 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=52.5
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEcchhHHhhhc
Q 007611 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCSTQEQRANL 221 (596)
Q Consensus 144 e~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~--~ptv~f~~~~~~~~~~~ 221 (596)
..+|+||.|+|+.++. ++..+...+.. .+.|+|+|+||+|++....+......|.+. .|.+
T Consensus 82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi------------- 144 (258)
T 3a1s_A 82 GDADLVILVADSVNPE--QSLYLLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVV------------- 144 (258)
T ss_dssp SCCSEEEEEEETTSCH--HHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEE-------------
T ss_pred cCCCEEEEEeCCCchh--hHHHHHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEE-------------
Confidence 6899999999998753 23333333332 379999999999997543222122223222 3333
Q ss_pred CcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 222 ~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
..|+..+.|++.|++.|..+..
T Consensus 145 ------------~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 145 ------------FTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp ------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------EEEeeCCcCHHHHHHHHHHHhh
Confidence 2344567889999988877543
No 350
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.51 E-value=0.0062 Score=68.39 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=35.0
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
.+..+|++|+|+||.+++........+.+.. .+.|+|+|+||+|+.+
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIH 136 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGST
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEeccccccc
Confidence 4567999999999999754333333444443 3789999999999985
No 351
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.49 E-value=0.0038 Score=59.49 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHhhhcCeEEEEEeCC-CCCCCC--cHHHHHHHHH----hCCCCceeEEeeccCCCCHHHHHHHHHHHH
Q 007611 141 KVIEVSDVILEVLDAR-DPLGTR--CIDMEKMVMK----AGPDKHLVLLLNKIDLVPRESVEKWLKYLR 202 (596)
Q Consensus 141 kvie~sDVIleVlDAR-dPl~sr--~~~le~~i~~----~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr 202 (596)
..+..+|+||+|+|+. ++-+.. ...+.+++.. ...+.|+|+|+||+||.+...+..+...+.
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 146 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 146 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHH
Confidence 3445599999999998 554432 1223333322 224789999999999998765555555444
No 352
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.48 E-value=0.0016 Score=64.54 Aligned_cols=56 Identities=16% Similarity=0.060 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCC---CCceeEEee-ccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGP---DKHLVLLLN-KIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~---~K~lILVLN-KiDLVp~ 191 (596)
+.+.++..+..+|+||+|+|+.. +......+.+.+....+ .+|.|+|+| |+||.+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 35566667888999999999975 33333334344443211 468888888 9999864
No 353
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0022 Score=59.80 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=43.8
Q ss_pred HHHHHhhhcCeEEEEEeCC-CCCCCCc--HHHHHHHHH----hCCCCceeEEeeccCCCCHHHHHHHHHHHHhc
Q 007611 138 ELVKVIEVSDVILEVLDAR-DPLGTRC--IDMEKMVMK----AGPDKHLVLLLNKIDLVPRESVEKWLKYLREE 204 (596)
Q Consensus 138 el~kvie~sDVIleVlDAR-dPl~sr~--~~le~~i~~----~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~ 204 (596)
.+...+..+|+||+|+|+. ++.+... ..+..++.. ...+.|+|+|+||+||.+...+..+...|.+.
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~ 184 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESE 184 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHH
Confidence 3445567799999999997 4422111 223333322 12478999999999999877666677666644
No 354
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.41 E-value=0.00041 Score=67.22 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=39.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEEEEe-CCcEEEEecCC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQL-DKNVKLLDCPG 316 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~v~l-~~~i~LiDTPG 316 (596)
..-.|+|+|.+|||||||+|.|.+... ..+...+.|||.+....+ +..+.++|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~ 75 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEE 75 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHH
Confidence 345689999999999999999997653 245677889987765433 22344444443
No 355
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.40 E-value=0.0015 Score=70.43 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=57.9
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhH
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQE 216 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~ 216 (596)
.....++..+|++|+|+|+ . .......+...+... +.|+|+|+||+||.+.... .+...+.+.+..
T Consensus 105 ~~~~~~l~~aD~vllVvD~-~-~~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~--------- 170 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDS-A-PTPYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEA--------- 170 (423)
T ss_dssp HHHHHHHTSCSEEEEECSS-S-CCHHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTC---------
T ss_pred HHHHHHHhcCCEEEEEEeC-C-ChHHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCC---------
Confidence 4466788899999999999 2 222223334444433 7899999999999876543 233333333221
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.....|+..+.|.+.|++.|....+
T Consensus 171 --------------~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 171 --------------KVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp --------------CCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred --------------CEEEEECCCCCCHHHHHHHHHHhhh
Confidence 1224555667888999998887553
No 356
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.39 E-value=0.006 Score=57.61 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=33.6
Q ss_pred HhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhC-CCCceeEEeeccCCCCH
Q 007611 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG-PDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~--~~le~~i~~~~-~~K~lILVLNKiDLVp~ 191 (596)
.+..+|++|+|+|+.++.+... ..+..+..... .+.|+|||.||+||.+.
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 4668999999999988754322 22222222111 37899999999999753
No 357
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.39 E-value=0.0041 Score=65.12 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=54.7
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhHHhhh
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRAN 220 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~~ 220 (596)
.++..+|+||+|+|+...... ..+...+ ..+|.|+|+||+|+.+......+...+...+..+.. ..
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~----~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~--------~~ 253 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQL--QGIKKGV----LELADIVVVNKADGEHHKEARLAARELSAAIRLIYP--------RE 253 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTT--TTCCTTS----GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHST--------TC
T ss_pred HHHHhCCEEEEEECCCCCccH--HHHHHhH----hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccc--------cc
Confidence 456899999999997543211 1111111 146899999999999876555555444432100000 00
Q ss_pred cCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 221 ~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
.+|. .....+|+..+.|++.|++.|..+..
T Consensus 254 ~~~~-----~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 254 ALWR-----PPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CSCC-----CCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred cCCC-----CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0000 01123455678899999999987654
No 358
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.35 E-value=0.002 Score=64.77 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhcCeEE-EEEeCCCCCCCCcH-HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 134 AFYKELVKVIEVSDVIL-EVLDARDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 134 ~~~kel~kvie~sDVIl-eVlDARdPl~sr~~-~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
.+...+...+..+|.+| +|+|+.+++..... .+.+.+. ..++|+|+|+||+||++..
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~--~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD--PQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC--TTCSSEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC--CCCCeEEEEEEccccCCCC
Confidence 45556677888887555 79999988765432 2333332 2378999999999999764
No 359
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.34 E-value=0.0008 Score=67.48 Aligned_cols=84 Identities=23% Similarity=0.379 Sum_probs=52.8
Q ss_pred hhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEcchhHHhhh
Q 007611 143 IEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCSTQEQRAN 220 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~--~ptv~f~~~~~~~~~~ 220 (596)
...+|+||.|+|+.++. ++..+...+... ...|+|+|+||+||++...+......+.+. .|.+
T Consensus 79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~------------ 143 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM--RNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVI------------ 143 (271)
T ss_dssp TTCCSEEEEEEEGGGHH--HHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEE------------
T ss_pred ccCCcEEEEEecCCcch--hhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEE------------
Confidence 36899999999998852 333333333332 239999999999998654322122333332 2333
Q ss_pred cCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 221 ~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
++|+..+.|++.|+..+....
T Consensus 144 -------------~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 144 -------------PTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp -------------ECBGGGTBTHHHHHHHHHHHH
T ss_pred -------------EEEeCCCCCHHHHHHHHHHHH
Confidence 334456788999998887654
No 360
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.33 E-value=0.001 Score=60.96 Aligned_cols=79 Identities=29% Similarity=0.373 Sum_probs=48.4
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCeEEEEcchhHHhh
Q 007611 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPAVAFKCSTQEQRA 219 (596)
Q Consensus 144 e~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e----~l~~Wl~yLr~~~ptv~f~~~~~~~~~ 219 (596)
..+|+|+.|+|+.++. +...+...+.. .+.|+|+|+||+||.... ....|...+. .+.+
T Consensus 80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~----------- 142 (165)
T 2wji_A 80 EKPDLVVNIVDATALE--RNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--VKVV----------- 142 (165)
T ss_dssp HCCSEEEEEEETTCHH--HHHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--SCEE-----------
T ss_pred CCCCEEEEEecCCchh--HhHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhC--CCEE-----------
Confidence 4799999999997642 11112222332 378999999999986432 1333433332 2222
Q ss_pred hcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
..|+..+.|++.|+..|...
T Consensus 143 --------------~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 143 --------------PLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp --------------ECBGGGTBSHHHHHHHHHHH
T ss_pred --------------EEEcCCCCCHHHHHHHHHHH
Confidence 23456678899999887654
No 361
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0024 Score=71.95 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCC-------CCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDP-------LGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdP-------l~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
.|.+.....+..+|++|+|+||.++ +..........+.. .+.+++|+|+||+||++
T Consensus 257 ~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 257 DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTTTTT
T ss_pred ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEecccccc
Confidence 3777788888999999999999874 11112222222222 22356999999999998
No 362
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.31 E-value=0.0055 Score=57.25 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=33.7
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh----CCCCceeEEeeccCCCC
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA----GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~----~~~K~lILVLNKiDLVp 190 (596)
...+..+|++|+|+|+.++.+.... .....+... ..+.|+|||+||+||..
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 3466789999999999877543211 111122221 25789999999999954
No 363
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.31 E-value=0.0025 Score=71.50 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHhhhcCeEEEEEeCCCCC-------CCCcHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 007611 141 KVIEVSDVILEVLDARDPL-------GTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl-------~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp 190 (596)
..+..+|++|+|+||.++. .........++... +.| +|+|+||+||++
T Consensus 274 ~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 274 AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMS 329 (592)
T ss_dssp C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGT
T ss_pred HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccc
Confidence 4556799999999999864 22333333333332 454 999999999986
No 364
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.30 E-value=0.0067 Score=59.66 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHH----H-HhCCCCceeEEeeccCCCCHHHH
Q 007611 136 YKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV----M-KAGPDKHLVLLLNKIDLVPRESV 194 (596)
Q Consensus 136 ~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i----~-~~~~~K~lILVLNKiDLVp~e~l 194 (596)
...+...+.. ++||.|+|+...... ..+...+ . ....+.|+++|+||+|+.+...+
T Consensus 129 ~~~~~~~~~~-~~iv~vvD~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~ 189 (262)
T 1yrb_A 129 GVRLMENLPY-PLVVYISDPEILKKP--NDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK 189 (262)
T ss_dssp HHHHHHTSSS-CEEEEEECGGGCCSH--HHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHH
T ss_pred HHHHHHHHhh-ceEEeccchhhhcCH--HHHHHHHHHHHHHhcccCCCeEEEEecccccccccH
Confidence 4455566666 999999998755432 2222110 0 01126899999999999987543
No 365
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.27 E-value=0.012 Score=67.23 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE 204 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~ 204 (596)
|..+....+..+|.+|+|+|+.++.......+...+.. .+.|+|+|+||+|+.... ....+..++..
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~~-~~~~~~~l~~~ 156 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGAD-LWLVIRTMQER 156 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccCC-HHHHHHHHHHH
Confidence 56677888999999999999998875544444444443 378999999999998653 33334444443
No 366
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.27 E-value=0.0016 Score=61.45 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHH---h--CCCCceeEEeeccCCCCH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMK---A--GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~le~~i~~---~--~~~K~lILVLNKiDLVp~ 191 (596)
..+..+|++|+|+|+.++.+.. .+..++.. . ..+.|+|||+||+||.+.
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQ--VIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHH--HHHHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred HHHhcCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 4567899999999998875321 22222221 1 236899999999999754
No 367
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.23 E-value=0.011 Score=60.60 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=38.0
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCcHH-HHHH---HHHhCCCCceeEEeeccCCCCH
Q 007611 138 ELVKVIEVSDVILEVLDARDPLGTRCID-MEKM---VMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 138 el~kvie~sDVIleVlDARdPl~sr~~~-le~~---i~~~~~~K~lILVLNKiDLVp~ 191 (596)
.....+..+|+||+|+|+.++.+..+.. +.+. +....++.|+|+|+||+||++.
T Consensus 73 ~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 73 QKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp THHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 3455668899999999999886543321 1112 2223468999999999999983
No 368
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.20 E-value=0.004 Score=67.57 Aligned_cols=62 Identities=24% Similarity=0.197 Sum_probs=39.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhc-----------------cccccccCCC-CceeeeEEE----Ee----C--CcEEEE
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKR-----------------CHVANVGATP-GLTRSMQEV----QL----D--KNVKLL 312 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~-----------------~kv~~vs~~P-gtTr~~q~v----~l----~--~~i~Li 312 (596)
.-.-|+|+|.+++|||+|+|.|++ .....+++.. .+|+.+-.. .+ + ..|+|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 346788999999999999997752 1223343322 245543221 11 1 249999
Q ss_pred ecCCCccCCC
Q 007611 313 DCPGVVMLKS 322 (596)
Q Consensus 313 DTPGI~~~~~ 322 (596)
||.|+.....
T Consensus 146 DTEG~~d~~~ 155 (457)
T 4ido_A 146 DTQGTFDSQS 155 (457)
T ss_dssp EECCBTCTTC
T ss_pred eccCCCCccc
Confidence 9999987643
No 369
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.18 E-value=0.011 Score=64.38 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCC-------CCcHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLG-------TRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~-------sr~~~le~~i~~~~~~K~-lILVLNKiDLVp 190 (596)
..|.+.....+..+|++|+|+||+++.. .........+.. .+.| +|+|+||+||.+
T Consensus 132 ~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 132 KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPS 195 (467)
T ss_dssp ----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTT
T ss_pred HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCC
Confidence 4577778888899999999999998731 122222222222 3565 999999999964
No 370
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.16 E-value=0.015 Score=69.62 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 007611 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (596)
Q Consensus 132 ~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~-lILVLNKiDLVp 190 (596)
...|.+.....+..+|++|+|+||.++...........+... +.| +|+|+||+||++
T Consensus 369 HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 369 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSCEEEEEECCTTCC
T ss_pred hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCeEEEEEeeccccc
Confidence 345778888888999999999999998665554444444433 567 789999999996
No 371
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.10 E-value=0.0085 Score=55.68 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=36.0
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHHHH---HHHhCCCCceeEEeeccCCCCHHHH
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKAGPDKHLVLLLNKIDLVPRESV 194 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le~~---i~~~~~~K~lILVLNKiDLVp~e~l 194 (596)
...+..+|+++.|+|..++..+.. .+..+ +....++.|+|||.||+||.....+
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVD-AMKPWLFNIKARASSSPVILVGTHLDVSDEKQR 130 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHH-THHHHHHHHHHHCTTCEEEEEEECGGGCCHHHH
T ss_pred HHHccCCcEEEEEEeCCcchhHHH-HHHHHHHHHHhhCCCCcEEEEEECCCcccchhh
Confidence 344667999999999988742211 12222 2223357899999999999876544
No 372
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.09 E-value=0.0079 Score=68.40 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCC--CHHHHHHHHHHHH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV--PRESVEKWLKYLR 202 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLV--p~e~l~~Wl~yLr 202 (596)
|..++...+..+|.+|+|+|+.+.+......+.+.+.. .+.|+|+|+||+|+. ..+.+..|...|.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKGGDYYALLEDLRSTLG 154 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGCCCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchhhhHHHHHHHHHHHhC
Confidence 55678888999999999999887765444444444443 378999999999997 1123444444443
No 373
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.08 E-value=0.01 Score=63.78 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCC-------CCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDP-------LGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdP-------l~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
|.......+..+|++|+|+||.+. +.........++... +.+++|+|+||+||++
T Consensus 97 f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 97 FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSS
T ss_pred HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCC
Confidence 667788889999999999999984 221112222222222 2357899999999997
No 374
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.00 E-value=0.0091 Score=64.18 Aligned_cols=93 Identities=28% Similarity=0.258 Sum_probs=58.8
Q ss_pred HHHhhhcCeEEEEEeC-CCCCCCCcHHHHHHHHHh--CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcchhH
Q 007611 140 VKVIEVSDVILEVLDA-RDPLGTRCIDMEKMVMKA--GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQE 216 (596)
Q Consensus 140 ~kvie~sDVIleVlDA-RdPl~sr~~~le~~i~~~--~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~~ptv~f~~~~~~ 216 (596)
.+.++.+|++|+|+|+ ++|+...+....+.+.-+ ...+|.|||+||+|+...+.+..|..++.....++.
T Consensus 230 l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi------- 302 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVL------- 302 (416)
T ss_dssp HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE-------
T ss_pred HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEE-------
Confidence 3457889999999999 455433222222221110 125899999999999988666677777654321221
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
++|+....|++.|+..|..+...
T Consensus 303 -----------------~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 303 -----------------PVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp -----------------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred -----------------EEECCCccCHHHHHHHHHHHHHh
Confidence 23445567888998888776543
No 375
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.98 E-value=0.021 Score=52.56 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=50.4
Q ss_pred hhhcCeEEEEEeCCCCCCC---------Cc--HHHHHHHHHhCCCCceeEEeeccCCCCHH--HHHHHHHHHHhcCC---
Q 007611 143 IEVSDVILEVLDARDPLGT---------RC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRE--SVEKWLKYLREELP--- 206 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~s---------r~--~~le~~i~~~~~~K~lILVLNKiDLVp~e--~l~~Wl~yLr~~~p--- 206 (596)
...+++|+.|+|+..+... .. ..+...+.. .+.|+|+|+||+||.+.. ....|...+.-.+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEID 157 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccC
Confidence 5567788888887532110 00 112222222 478999999999998753 45555544432110
Q ss_pred eEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhhh
Q 007611 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (596)
Q Consensus 207 tv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~ 255 (596)
...| ..|+..+.|++.|++.|.+...
T Consensus 158 ~~~~-----------------------~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 158 KVFI-----------------------PISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp HHEE-----------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEE-----------------------EEecCCCCCHHHHHHHHHHhcc
Confidence 0011 3445667889999888866543
No 376
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.93 E-value=0.0021 Score=65.01 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=51.7
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCeEEEEcchhHHhh
Q 007611 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPAVAFKCSTQEQRA 219 (596)
Q Consensus 144 e~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e----~l~~Wl~yLr~~~ptv~f~~~~~~~~~ 219 (596)
+.+|+||.|+|+.++. ++..+...+.. .+.|+|+|+||+|++... ....|...+. .|.+
T Consensus 79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--~~vi----------- 141 (272)
T 3b1v_A 79 QRADSILNVVDATNLE--RNLYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--VPVV----------- 141 (272)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--SCEE-----------
T ss_pred CCCCEEEEEecCCchH--hHHHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--CCEE-----------
Confidence 4799999999997742 22233333333 479999999999997542 2344444332 3433
Q ss_pred hcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.+|+..+.|++.|+..|....
T Consensus 142 --------------~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 142 --------------ATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp --------------ECBTTTTBSHHHHHHHHHHSC
T ss_pred --------------EEEccCCCCHHHHHHHHHHHH
Confidence 234556789999998887643
No 377
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.87 E-value=0.003 Score=58.40 Aligned_cols=82 Identities=28% Similarity=0.360 Sum_probs=49.2
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCeEEEEcchhHHhh
Q 007611 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPAVAFKCSTQEQRA 219 (596)
Q Consensus 144 e~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e----~l~~Wl~yLr~~~ptv~f~~~~~~~~~ 219 (596)
..+|+|+.|+|+.... ....+...+. ..+.|+|+|+||+||.... ....|...+. .+.+
T Consensus 84 ~~~~~~i~v~d~~~~~--~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~----------- 146 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE--RNLYLTLQLM--EMGANLLLALNKMDLAKSLGIEIDVDKLEKILG--VKVV----------- 146 (188)
T ss_dssp HCCSEEEEEEEGGGHH--HHHHHHHHHH--TTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--SCEE-----------
T ss_pred cCCCEEEEEecchhHH--HHHHHHHHHH--hcCCCEEEEEEhhhccccccchHHHHHHHHHhC--CCeE-----------
Confidence 4599999999987521 1111222222 2478999999999986543 2333333221 2222
Q ss_pred hcCcCcccCCCCCcccccccccCHHHHHHHHHhhhhc
Q 007611 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (596)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~~~ 256 (596)
.+|+..+.|++.|+..|......
T Consensus 147 --------------~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 147 --------------PLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp --------------ECBGGGTBSHHHHHHHHHHHHTT
T ss_pred --------------EEEecCCCCHHHHHHHHHHHHHh
Confidence 23445667889999888766543
No 378
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.77 E-value=0.0006 Score=64.42 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=29.5
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHHHHHH---HHHh-CCCCceeEEeeccCCCCH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA-GPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~le~~---i~~~-~~~K~lILVLNKiDLVp~ 191 (596)
..+..+|+||+|+|+.++.+. ..+..+ +... ..+.|+|||+||+||.+.
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 101 SYYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp C--CCCSEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 356789999999999987532 122333 2222 236899999999999865
No 379
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.71 E-value=0.0098 Score=67.97 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=38.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCcHHHH-HHHHHhCCCCceeEEeeccCCCCHH
Q 007611 137 KELVKVIEVSDVILEVLDARDPLGTRCIDME-KMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 137 kel~kvie~sDVIleVlDARdPl~sr~~~le-~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
......+..+|+||+|+|+..|++.....+. +.+. ..++|+++|+||+|+++..
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~--~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK--GRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT--TSCCCEEEEEECGGGGGGG
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH--hhCCCEEEEEECccccccc
Confidence 4556788999999999999988754332221 2222 1367899999999998653
No 380
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.67 E-value=0.014 Score=65.59 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEeecCCCCCcchHHHhhhccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~k 286 (596)
.|+|||.+|+|||||+|+|.|-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999863
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.66 E-value=0.0085 Score=57.23 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=47.6
Q ss_pred cCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeEEEEcchhHHhhhcCc
Q 007611 146 SDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAVAFKCSTQEQRANLGW 223 (596)
Q Consensus 146 sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e--~l~~Wl~yLr~~~ptv~f~~~~~~~~~~~~~ 223 (596)
++.+|.|+|+..+.. . +....... +.|.++|+||+||++.. .+.....+++...+...+.
T Consensus 130 ~~~~i~vvd~~~~~~--~--~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~------------ 191 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDD--V--VEKHPEIF--RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKII------------ 191 (221)
T ss_dssp CSEEEEEEEGGGCTT--H--HHHCHHHH--HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEE------------
T ss_pred cCcEEEEEeCCCcch--h--hhhhhhhh--hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEE------------
Confidence 456677999987632 1 11111111 47899999999997542 3444445554433322221
Q ss_pred CcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 224 KSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 224 ~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
..|+..+.|.+.|+..|....
T Consensus 192 ----------~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 192 ----------EMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp ----------ECBTTTTBTHHHHHHHHHHHH
T ss_pred ----------EeecCCCCCHHHHHHHHHHHH
Confidence 234456778999998887643
No 382
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.62 E-value=0.016 Score=60.23 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=50.9
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc---CCeEEEEcchhHHh
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE---LPAVAFKCSTQEQR 218 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr~~---~ptv~f~~~~~~~~ 218 (596)
++..+|+||+|+|+..+..... +..... +.|.++|+||+|+.+...+..++..++.. ++.. +
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~---~------ 230 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQG--IKKGLM----EVADLIVINKDDGDNHTNVAIARHMYESALHILRRK---Y------ 230 (341)
T ss_dssp HHTTCSEEEEEECC------CC--CCHHHH----HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCS---B------
T ss_pred HHHhCCEEEEEEeCCccHHHHH--HHHhhh----cccCEEEEECCCCCChHHHHHHHHHHHHHHHhcccc---c------
Confidence 5688999999999865422110 111111 36789999999999876555555444331 1100 0
Q ss_pred hhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 219 ANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.+|. ....++|+..+.|.+.|++.|..+.
T Consensus 231 --~~~~-----~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 231 --DEWQ-----PRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp --TTBC-----CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred --cCCC-----CcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0000 0011355567889999999988754
No 383
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.62 E-value=0.028 Score=54.60 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=55.2
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--HHHHHHHHHhCCCCceeEEeeccCCCC-----HHHHHHHHHHHHhcCCeEEEEc
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP-----RESVEKWLKYLREELPAVAFKC 212 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~--~~le~~i~~~~~~K~lILVLNKiDLVp-----~e~l~~Wl~yLr~~~ptv~f~~ 212 (596)
...+..+|++|.|.|..++.+..+ ..+..+.....++.|+|||.||+||.. .+....|...+. ...|.
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~----~~~~e- 154 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN----VMFIE- 154 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CEEEE-
T ss_pred HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC----CeeEE-
Confidence 345678999999999988865433 223333333456789999999999954 344455544332 22222
Q ss_pred chhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHh
Q 007611 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (596)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~ 252 (596)
.|+..+.|++.+++.|..
T Consensus 155 ----------------------~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 155 ----------------------TSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp ----------------------EBTTTTBSHHHHHHHHHH
T ss_pred ----------------------EeCCCCcCHHHHHHHHHH
Confidence 345567888888877754
No 384
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.59 E-value=0.0039 Score=61.82 Aligned_cols=56 Identities=13% Similarity=-0.004 Sum_probs=37.0
Q ss_pred HHHHHHHHh----hhcCeEEEEEeCCCCCCCCcHHHHHHHHHhC-C---CCceeEEeeccCCCCH
Q 007611 135 FYKELVKVI----EVSDVILEVLDARDPLGTRCIDMEKMVMKAG-P---DKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvi----e~sDVIleVlDARdPl~sr~~~le~~i~~~~-~---~K~lILVLNKiDLVp~ 191 (596)
+++++.+.+ ..+|+||+|+|+.. +......+.+.+.... . +.|+|||.||+||...
T Consensus 91 ~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 91 GCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp TSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 444454444 89999999999974 3333333444444421 1 5789999999999763
No 385
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.54 E-value=0.0077 Score=66.44 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=36.7
Q ss_pred HhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 142 vie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
.+..+|+||.|+|+..+ .....+...+....++.|+|+|+||+||.+.
T Consensus 118 ~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPS 165 (535)
T ss_dssp HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTT
T ss_pred HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccc
Confidence 35679999999999876 3344455556655567999999999999864
No 386
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.53 E-value=0.0077 Score=65.37 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCC-------CcHHHHHHHHHhCCCC-ceeEEeeccCCCC
Q 007611 134 AFYKELVKVIEVSDVILEVLDARDPLGT-------RCIDMEKMVMKAGPDK-HLVLLLNKIDLVP 190 (596)
Q Consensus 134 ~~~kel~kvie~sDVIleVlDARdPl~s-------r~~~le~~i~~~~~~K-~lILVLNKiDLVp 190 (596)
.|.+.....+..+|++|+|+||.++... .......++.. .+. ++|+|+||+||++
T Consensus 97 ~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 97 DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGT
T ss_pred HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEcccccc
Confidence 4778888889999999999999976311 11112222222 244 4899999999984
No 387
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.52 E-value=0.013 Score=62.51 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=26.3
Q ss_pred CCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEcc
Q 007611 176 DKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKCS 213 (596)
Q Consensus 176 ~K~lILVLNKiDLVp~e~l~~Wl~yLr~~-~ptv~f~~~ 213 (596)
.+|+|+|+||+|+...+.+..+..++... .+.+++.|.
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~ 252 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAA 252 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHH
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEecc
Confidence 49999999999999665566666655432 245666543
No 388
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.52 E-value=0.0052 Score=57.60 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=28.3
Q ss_pred eEEEeecCCCCCcchHHHhhhcccc-ccccCCCCceeeeEE
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQE 302 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~kv-~~vs~~PgtTr~~q~ 302 (596)
-.|+|+|.+|+|||||+|.|.+... ...+..+.+|+.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ 46 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKK 46 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCc
Confidence 4689999999999999999997542 123445566665544
No 389
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.46 E-value=0.018 Score=60.12 Aligned_cols=91 Identities=11% Similarity=0.128 Sum_probs=49.2
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHH----HHHHHHHhcCCeEEEEcchhH
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVE----KWLKYLREELPAVAFKCSTQE 216 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~----~Wl~yLr~~~ptv~f~~~~~~ 216 (596)
.+.+.+|+|++|+|+..+... ..+...+ -..+.|+|+||+|+.+..... .+...++...|....
T Consensus 183 ~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~------ 250 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQV------ 250 (349)
T ss_dssp HHHTTCSEEEEEECCC------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----------
T ss_pred hHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccC------
Confidence 457899999999999765321 1121112 146889999999998764332 232323221110000
Q ss_pred HhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
+. ....++|+.++.|.+.|++.|..+.
T Consensus 251 ------~~-----~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 251 ------WK-----PKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp ------CC-----CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------CC-----ceEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 0011355667889999999998764
No 390
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.32 E-value=0.0074 Score=65.36 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=24.9
Q ss_pred cceEEEeecCCCCCcchHHHhhh------cccccccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK------RCHVANVG 291 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~------~~kv~~vs 291 (596)
++..|+++|.|||||||+++.|. |.+++.++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36789999999999999999997 55554443
No 391
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.11 E-value=0.012 Score=61.43 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=37.1
Q ss_pred HHHHHHHHHh-hhcCeEEEEEeCCCCCCCCcHH-HHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 134 AFYKELVKVI-EVSDVILEVLDARDPLGTRCID-MEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 134 ~~~kel~kvi-e~sDVIleVlDARdPl~sr~~~-le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
.+...+...+ ..+|+||.|+||..++...... +.+.+. ..++|+|+|+||+||++..
T Consensus 155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~--~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 155 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD--PQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC--TTCTTEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC--cCCCceEEEeccccccCcc
Confidence 3444445555 4567888899998766544321 333332 2378999999999999754
No 392
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.10 E-value=0.018 Score=65.85 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYL 201 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e---~l~~Wl~yL 201 (596)
|..+....+..+|++|+|+|+.++.......+...+.. .+.|+|+|+||+|+...+ .+..+...|
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l 155 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGANFEYSVSTLHDRL 155 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCccccchHHHHHHHHHHh
Confidence 44567778889999999999998876554444444544 378999999999998643 344444444
No 393
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=94.84 E-value=0.019 Score=63.55 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e 192 (596)
|..+....+..+|.+|+|+||.++.......+.+.+. ..+.|+|+|+||+|+....
T Consensus 95 f~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~--~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 95 FSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--LRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT--TTTCCEEEEEECTTSCCSC
T ss_pred HHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH--HcCCCEEEEEcCcCCcccc
Confidence 4456777889999999999999876433333333332 2378999999999998653
No 394
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.74 E-value=0.017 Score=56.34 Aligned_cols=64 Identities=8% Similarity=0.141 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHH-h--CCCCceeEEeeccCCCCHHHHHHH
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMK-A--GPDKHLVLLLNKIDLVPRESVEKW 197 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~-~--~~~K~lILVLNKiDLVp~e~l~~W 197 (596)
+.+.+.+......+|+||+|+|+... ..........+.. . ...+|+|+|+||+|+++...+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~ 166 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDY 166 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHH
Confidence 34555555555667999999998743 3322222222221 1 124699999999999887655533
No 395
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.70 E-value=0.0097 Score=60.97 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.0
Q ss_pred ceEEEeecCCCCCcchHHHhhh
Q 007611 262 SITVGVIGLPNVGKSSLINSLK 283 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~ 283 (596)
+..|+++|.+|+||||+++.|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999997
No 396
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.68 E-value=0.043 Score=54.66 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhh--hcCeEEEEEeCCCC-CCCCcHHHHHHHHHhCC-C--CceeEEeeccCCCCHH
Q 007611 133 RAFYKELVKVIE--VSDVILEVLDARDP-LGTRCIDMEKMVMKAGP-D--KHLVLLLNKIDLVPRE 192 (596)
Q Consensus 133 ~~~~kel~kvie--~sDVIleVlDARdP-l~sr~~~le~~i~~~~~-~--K~lILVLNKiDLVp~e 192 (596)
..+++.++..+. .+|+||+|+|+... +......+.+.+....+ . +|+|+|+||+||++++
T Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 456666665543 69999999877442 11111233344433212 2 6899999999999875
No 397
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.65 E-value=0.0057 Score=58.39 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=28.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeE
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQ 301 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q 301 (596)
....|+|+|.||+|||||++.|...-.. .....+.|||...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~ 52 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKR 52 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCC
Confidence 3567899999999999999999864311 1223455666554
No 398
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.56 E-value=0.024 Score=54.18 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.7
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
.....|+|+|.+++|||||++.|.+.-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998753
No 399
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.54 E-value=0.066 Score=51.65 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=31.0
Q ss_pred hhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh--CCCCceeEEeeccCCCC
Q 007611 143 IEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~sr~~-~le~~i~~~--~~~K~lILVLNKiDLVp 190 (596)
...+|++|.|.|.-++.+.... .+...+... ..+.|+|||.||+||..
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 4568999999998776432221 122223221 24789999999999964
No 400
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=94.34 E-value=0.06 Score=61.60 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
|..++...+..+|.+|.|+|+.+........+.+.+.. .+.|+|+|+||+|+...
T Consensus 95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCcccc
Confidence 66788889999999999999998764433333333332 37899999999999764
No 401
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.34 E-value=0.024 Score=52.61 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcc
Q 007611 243 AETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 243 ~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
....++.+..|..+-.....-.++|+|.||+|||||+++|.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456666666665544445567999999999999999999864
No 402
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.29 E-value=0.015 Score=54.85 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.5
Q ss_pred eEEEeecCCCCCcchHHHhhhccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
++++|+|.+|+|||||++.|.+.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999764
No 403
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.27 E-value=0.018 Score=62.16 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.8
Q ss_pred cceEEEeecCCCCCcchHHHhhh
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK 283 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~ 283 (596)
.+..|+++|.+||||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35778999999999999999997
No 404
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.16 E-value=0.057 Score=50.65 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=31.5
Q ss_pred hhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh--CCCCceeEEeeccCCCC
Q 007611 143 IEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 143 ie~sDVIleVlDARdPl~sr~~-~le~~i~~~--~~~K~lILVLNKiDLVp 190 (596)
...+|.+|.|.|.-++.+.... .+...+... ..+.|+|||.||+||..
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 3458999999998776543221 222223322 24789999999999975
No 405
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.12 E-value=0.021 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
..-.|+|+|.||+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999999875
No 406
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.96 E-value=0.095 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.0
Q ss_pred ceEEEeecCCCCCcchHHHhhhccc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...|+++|.+|+||||+.+.|.++-
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 4579999999999999999999753
No 407
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.81 E-value=0.079 Score=55.14 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhC-CCCceeEEeeccCCCCHH
Q 007611 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG-PDKHLVLLLNKIDLVPRE 192 (596)
Q Consensus 131 ~~~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~-~~K~lILVLNKiDLVp~e 192 (596)
....+...+...+..+|+||+|+|+....... .....++.... .++|+|+|+||+||++..
T Consensus 158 ~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 158 IVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 34455666778899999999999864332221 22334444433 368999999999999764
No 408
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.78 E-value=0.026 Score=54.14 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=27.3
Q ss_pred ceEEEeecCCCCCcchHHHhhhccccc-cccCCCCceee
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRS 299 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~ 299 (596)
...|+|+|.+|+|||||++.|.+.... .....+.+|+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~ 46 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRL 46 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEeccccc
Confidence 456899999999999999999976422 33334445553
No 409
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=93.68 E-value=0.12 Score=57.34 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~ 191 (596)
|..++.++|..+|-+|.|+||-.........+-+.+.. .+.|+|+++||+|....
T Consensus 113 F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 113 FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchhc
Confidence 77899999999999999999988766555555555554 37999999999998643
No 410
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.50 E-value=0.05 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=22.9
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.....|+|+|.+++|||||++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999863
No 411
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.43 E-value=0.023 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.0
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
-.|+|||.+|+|||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999975
No 412
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.38 E-value=0.024 Score=61.24 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=25.5
Q ss_pred cceEEEeecCCCCCcchHHHhhh-------ccccccccC
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK-------RCHVANVGA 292 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~-------~~kv~~vs~ 292 (596)
.+..|+|+|.+||||||+...|. |.+++.+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 35688999999999999999997 666654433
No 413
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.34 E-value=0.016 Score=55.33 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=29.8
Q ss_pred EEeecCCCCCcchHHHhhhccccc-cccCCCCceeeeEEE
Q 007611 265 VGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEV 303 (596)
Q Consensus 265 V~vVG~PNVGKSSLINsL~~~kv~-~vs~~PgtTr~~q~v 303 (596)
|.|+|.+||||+||++.|+..... -.-..+.|||.+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~g 43 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG 43 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCC
Confidence 789999999999999999865421 234567888876543
No 414
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.23 E-value=0.085 Score=50.32 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=33.7
Q ss_pred CCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeEEEEcchhHHhhhcCcCcccCCCCCcccccccccCHHHHHHHHHhh
Q 007611 176 DKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (596)
Q Consensus 176 ~K~lILVLNKiDLVp~e--~l~~Wl~yLr~~~ptv~f~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y 253 (596)
++|.++|+||+||.+.. .......+++...+...+. ..|+..+.|++.|+..|...
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVV----------------------LLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEE----------------------ECCTTTCTTHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEE----------------------EEEecCCCCHHHHHHHHHHH
Confidence 47889999999997642 2333344444322222221 23445677889988887654
No 415
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.18 E-value=0.034 Score=52.27 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
....|+|+|.+|+|||||++.|.+.-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998754
No 416
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.07 E-value=0.036 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.6
Q ss_pred ceEEEeecCCCCCcchHHHhhhcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.-.|+|+|.+|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457899999999999999999975
No 417
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.90 E-value=0.13 Score=48.03 Aligned_cols=50 Identities=20% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHHh-CCCCceeEEeeccCCCC
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~-~le~~i~~~-~~~K~lILVLNKiDLVp 190 (596)
.....+|++|.|+|+.++.+.... .....+... ..+.|+++|+||+||..
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 344678999999999877543221 112222222 24688999999999964
No 418
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.90 E-value=0.13 Score=50.97 Aligned_cols=70 Identities=13% Similarity=-0.006 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHHhh--hcCeEEEEEeCCCCCCC-CcHHHHHHHHHhCC---CCceeEEeeccCCCCH--HHHHHHHH
Q 007611 130 NSDRAFYKELVKVIE--VSDVILEVLDARDPLGT-RCIDMEKMVMKAGP---DKHLVLLLNKIDLVPR--ESVEKWLK 199 (596)
Q Consensus 130 ~~~~~~~kel~kvie--~sDVIleVlDARdPl~s-r~~~le~~i~~~~~---~K~lILVLNKiDLVp~--e~l~~Wl~ 199 (596)
.....+++.+++.+. .+|+||+|+|+-.+-.+ ....+.+.+....+ .+|+|+|+||+||++. ..++.|+.
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~ 176 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSS 176 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHH
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHH
Confidence 344567777877774 68999999876543322 22234444544322 2589999999999854 23444443
No 419
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.76 E-value=0.038 Score=53.94 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|.+|+|||||++.|.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45678999999999999999999864
No 420
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=92.76 E-value=0.11 Score=56.98 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=36.5
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 140 ~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
...+..+|++|+|+||.++...........+.. .+.|+|+|+||+||..
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSST
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccc
Confidence 345678999999999998765544444444433 3789999999999975
No 421
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.74 E-value=0.14 Score=53.63 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=33.0
Q ss_pred CeEEEEEeC-CCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHH
Q 007611 147 DVILEVLDA-RDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLR 202 (596)
Q Consensus 147 DVIleVlDA-RdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp~e~l~~Wl~yLr 202 (596)
|++|+++|. +.++..... .++.....+.|+|+|+||+|+.....+..+...+.
T Consensus 147 ~~~vy~I~~~~~~l~~~d~---~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~ 200 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKERERLKKRIL 200 (361)
T ss_dssp CEEEEEECSSSSSCCHHHH---HHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCcchhHH---HHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 568888875 555533222 33333345789999999999998776655433333
No 422
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.66 E-value=0.056 Score=63.08 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV 189 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLV 189 (596)
|..+....+..+|.+|.|+||.++.......+...+.. .+.|+|+|+||+|+.
T Consensus 111 f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 111 FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred hHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 45577788899999999999998875444433333332 378999999999997
No 423
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.62 E-value=0.072 Score=55.20 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.4
Q ss_pred cccceEEEeecCCCCCcchHHHhhhcc
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
...++.|||+|-+++|||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345778999999999999999999764
No 424
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.59 E-value=0.045 Score=52.20 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.6
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...-.++|+|.+|+|||||+|.|.+--
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344578999999999999999999753
No 425
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.51 E-value=0.048 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
....|||+|.+++|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999975
No 426
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.33 E-value=0.052 Score=48.97 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.8
Q ss_pred eEEEeecCCCCCcchHHHhh
Q 007611 263 ITVGVIGLPNVGKSSLINSL 282 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL 282 (596)
+.|+|+|.|++||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 427
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.32 E-value=0.048 Score=52.81 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=16.8
Q ss_pred cceEEEeecCCCCCcchHHHhhh-ccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLK-RCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~-~~k 286 (596)
..-.|+|+|.+++|||||++.|. +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34579999999999999999999 753
No 428
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.32 E-value=0.045 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
..|+|+|.|++|||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 429
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.29 E-value=0.045 Score=52.98 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|||.+|+|||||++.|.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34569999999999999999999843
No 430
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.12 E-value=0.064 Score=49.74 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.4
Q ss_pred cceEEEeecCCCCCcchHHHhhhc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
.+..|.|+|.|++||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 431
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.07 E-value=0.081 Score=52.95 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=23.6
Q ss_pred cccceEEEeecCCCCCcchHHHhhhcc
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
+.....|+|+|.+|+|||||+++|.+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 345678999999999999999999975
No 432
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.02 E-value=0.05 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEeecCCCCCcchHHHhhhccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~k 286 (596)
.|+|+|.+|+|||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999999754
No 433
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.01 E-value=0.051 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.4
Q ss_pred EEEeecCCCCCcchHHHhhhc
Q 007611 264 TVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~ 284 (596)
.++|+|.+++|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
No 434
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.01 E-value=0.06 Score=51.28 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=30.0
Q ss_pred cCHHHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhcc
Q 007611 241 LGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 241 ~G~~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.|...|-.+|.. ++...-.++|+|.+++|||||++.|.+.
T Consensus 9 tG~~~LD~~l~g-----gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 9 TGSKSLDKLLGG-----GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp CSCHHHHHHTTS-----SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCChhHHhHhcC-----CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 355555555532 4555668999999999999999999874
No 435
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.01 E-value=0.058 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred ceEEEeecCCCCCcchHHHhhhcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
...|+|+|.+|+|||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 436
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.96 E-value=0.27 Score=50.98 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=48.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC-HHHHHHHHHHHHhcCCeEEEEcchhHHhh
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP-RESVEKWLKYLREELPAVAFKCSTQEQRA 219 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp-~e~l~~Wl~yLr~~~ptv~f~~~~~~~~~ 219 (596)
.+.+.+|++++|+|+..+.. ...+...+. ..+.++|+||+||++ ......+...+......+.-.+
T Consensus 164 ~v~~~~d~vl~v~d~~~~~~--~~~i~~~i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~------- 230 (337)
T 2qm8_A 164 AVADLTDFFLVLMLPGAGDE--LQGIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPS------- 230 (337)
T ss_dssp HHHTTSSEEEEEECSCC--------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSB-------
T ss_pred hHHhhCCEEEEEEcCCCccc--HHHHHHHHh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccc-------
Confidence 45689999999999853311 000111111 135688899999876 4333333333322100000000
Q ss_pred hcCcCcccCCCCCcccccccccCHHHHHHHHHhhh
Q 007611 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (596)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~s~~~G~~~Ll~lLk~y~ 254 (596)
.+|. ....++|+.++.|.+.|++.|..+.
T Consensus 231 -~~~~-----~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 231 -ATWT-----PPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp -TTBC-----CCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -cCCC-----CCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 0111345667889999999998754
No 437
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.96 E-value=0.094 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.0
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.....|||+|.+++|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999874
No 438
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.89 E-value=0.06 Score=55.43 Aligned_cols=28 Identities=46% Similarity=0.534 Sum_probs=23.9
Q ss_pred cccceEEEeecCCCCCcchHHHhhhccc
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
+...-.|+|||.+|+|||||++.|.|--
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3455689999999999999999999753
No 439
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.87 E-value=0.11 Score=52.79 Aligned_cols=42 Identities=19% Similarity=0.081 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhccccccceEEEeecCCCCCcchHHHhhhccc
Q 007611 244 ETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 244 ~~Ll~lLk~y~~~~~~k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
+.|.+.+..+... ....+..|||+|.+++|||||.+.|.+.-
T Consensus 14 ~~l~~~i~~~~~~-~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 14 EFLDKYIPEWFET-GNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp HHHHHHHHHHHTT-TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc-cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556666555332 23457889999999999999999998643
No 440
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.78 E-value=0.07 Score=48.98 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.1
Q ss_pred ceEEEeecCCCCCcchHHHhhhcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
...|+|+|.|++|||||.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 441
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.77 E-value=0.056 Score=50.92 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
..++|+|.+|+|||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999975
No 442
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.76 E-value=0.069 Score=52.25 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=20.7
Q ss_pred ceEEEeecCCCCCcchHHHhhh
Q 007611 262 SITVGVIGLPNVGKSSLINSLK 283 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~ 283 (596)
+..|+|+|.||+|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999999
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.72 E-value=0.06 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.4
Q ss_pred eEEEeecCCCCCcchHHHhhhc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~ 284 (596)
..|+|+|.+++||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 444
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.70 E-value=0.074 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCcchHHHhhhc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~ 284 (596)
..|.|+|.|++||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 445
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.57 E-value=0.079 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
..-.++++|.+|+|||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 345789999999999999998653
No 446
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.49 E-value=0.2 Score=52.98 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhC---CCCceeEEeeccCC
Q 007611 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG---PDKHLVLLLNKIDL 188 (596)
Q Consensus 133 ~~~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~---~~K~lILVLNKiDL 188 (596)
+...+++...+..||+||.|+|+.+|+... ..++..+.... ..+|.++|+||+|.
T Consensus 137 ~~~g~~~l~~i~~ad~il~vvD~~~p~~~~-~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 137 RGRGKQVIAVARTCNLLFIILDVNKPLHHK-QIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp -CHHHHHHHHHHHCSEEEEEEETTSHHHHH-HHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred hHHHHHHHHHHHhcCccccccccCccHHHH-HHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 334567888999999999999999986421 22333333321 25789999999996
No 447
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.49 E-value=0.084 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.668 Sum_probs=23.0
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.....|+|+|.|++|||||.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999875
No 448
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=91.47 E-value=0.13 Score=53.77 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=32.0
Q ss_pred HHhhhcCeEEEEEeCCCCCC--------CCcHH----HHHHHHH-hCCCCceeEEeeccCCC
Q 007611 141 KVIEVSDVILEVLDARDPLG--------TRCID----MEKMVMK-AGPDKHLVLLLNKIDLV 189 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~--------sr~~~----le~~i~~-~~~~K~lILVLNKiDLV 189 (596)
...+.++.||+|+|.-++-. .+-.. ++.++.. ...+.|+|||+||+||.
T Consensus 212 ~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 212 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCch
Confidence 45678999999999987532 11112 2222211 12468999999999985
No 449
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.46 E-value=0.07 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
..|+|+|.|++||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 450
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.44 E-value=0.069 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.441 Sum_probs=20.1
Q ss_pred EEEeecCCCCCcchHHHhhhcc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.|+|+|.|++||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999863
No 451
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.42 E-value=0.076 Score=51.81 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|--
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999999853
No 452
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.29 E-value=0.079 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=19.9
Q ss_pred EEEeecCCCCCcchHHHhhhcc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.|+|+|.|++||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 453
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.28 E-value=0.087 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|--
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44579999999999999999999854
No 454
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.24 E-value=0.088 Score=51.85 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=23.2
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...-.++|+|..|+|||||++.|.|--
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 455
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.23 E-value=0.083 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred ceEEEeecCCCCCcchHHHhhhc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
+..|+|+|.|++||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 456
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.21 E-value=0.086 Score=49.83 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.3
Q ss_pred eEEEeecCCCCCcchHHHhhhc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~ 284 (596)
..|+|+|.+++||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999986
No 457
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.18 E-value=0.084 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=21.4
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
-.++|+|..|+|||||++.|.|-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999987
No 458
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.12 E-value=0.082 Score=52.27 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.8
Q ss_pred eEEEeecCCCCCcchHHHhhhccc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
-.++|+|..|+|||||++.|.|--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999853
No 459
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.99 E-value=0.099 Score=51.58 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.4
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...-.++|+|..|+|||||++.|.|-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 460
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.99 E-value=0.094 Score=49.60 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
....|+|+|.+++|||||.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 461
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.94 E-value=0.09 Score=54.08 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.3
Q ss_pred cccceEEEeecCCCCCcchHHHhhhccc
Q 007611 259 IKKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 259 ~k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
......|||+|.+|+|||||++.|.+.-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4567789999999999999999999753
No 462
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.91 E-value=0.1 Score=48.58 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
....|+|+|.|++||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 463
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.84 E-value=0.096 Score=52.18 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|--
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999854
No 464
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.84 E-value=0.046 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEeecCCCCCcchHHHhhhccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~k 286 (596)
.|+|||.+|+|||||++.|.+.-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999753
No 465
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.82 E-value=0.1 Score=52.28 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.1
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...-.++|+|..|+|||||++.|.|--
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999999853
No 466
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.78 E-value=0.097 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred ceEEEeecCCCCCcchHHHhhhc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
...|.|+|.|++||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 467
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.74 E-value=0.09 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.6
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|--
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999999854
No 468
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.73 E-value=0.1 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
++..|+|+|.|++||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 469
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.73 E-value=0.077 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEeecCCCCCcchHHHhhhccc
Q 007611 264 TVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 264 ~V~vVG~PNVGKSSLINsL~~~k 286 (596)
.|+|+|.+++|||||++.|.+.-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48999999999999999999754
No 470
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.68 E-value=0.1 Score=49.22 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
++..|+|+|.|++||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999853
No 471
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.65 E-value=0.1 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|--
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999864
No 472
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.59 E-value=0.11 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=22.2
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.+..|+|+|.|++||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999853
No 473
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.57 E-value=0.1 Score=48.13 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.3
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
..|.|+|.|++||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
No 474
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.53 E-value=0.11 Score=48.68 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.4
Q ss_pred ceEEEeecCCCCCcchHHHhhhcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
+..|+|.|.|++||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999853
No 475
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.49 E-value=0.11 Score=51.85 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.2
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...-.++|+|..|+|||||++.|.|-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345579999999999999999999853
No 476
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.42 E-value=0.11 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.5
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
..|.|+|.|++||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 477
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.37 E-value=0.12 Score=51.98 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=23.2
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...-.++|+|..|+|||||++.|.|--
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 345579999999999999999999853
No 478
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.37 E-value=0.11 Score=50.75 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|--
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999864
No 479
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.32 E-value=0.094 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.1
Q ss_pred ceEEEeecCCCCCcchHHHhhhcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
...|+|+|.||+|||||.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 480
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.30 E-value=0.11 Score=49.61 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
+.+.|+|+|.|++||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999753
No 481
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.29 E-value=0.11 Score=49.12 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.1
Q ss_pred ceEEEeecCCCCCcchHHHhhhcc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
...|+|+|.|++||||+.+.|.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999853
No 482
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.29 E-value=0.11 Score=52.07 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.2
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...-.++|||..|+|||||++.|.|--
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345579999999999999999999854
No 483
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.22 E-value=0.12 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999854
No 484
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.20 E-value=0.12 Score=51.93 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.3
Q ss_pred ccceEEEeecCCCCCcchHHHhhhccc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
...-.++|+|..|+|||||++.|.|--
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 485
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.20 E-value=0.12 Score=52.37 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.7
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|||..|+|||||++.|.|--
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44578999999999999999999853
No 486
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.17 E-value=0.13 Score=48.03 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.0
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
....|+|+|.|++||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999764
No 487
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.17 E-value=0.12 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.3
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
..-.++|+|..|+|||||++.|.|-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999985
No 488
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.14 E-value=0.12 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|--
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44578999999999999999999864
No 489
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.12 E-value=0.12 Score=47.67 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
....|+|+|.+++||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999864
No 490
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.12 E-value=0.13 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred ceEEEeecCCCCCcchHHHhhhc
Q 007611 262 SITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 262 ~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
+..|+|+|.|++||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 491
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.03 E-value=0.13 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.8
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
...-.++|+|..|+|||||++.|.|-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557999999999999999999985
No 492
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.03 E-value=0.13 Score=51.39 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|--
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999853
No 493
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.00 E-value=0.13 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.8
Q ss_pred ccceEEEeecCCCCCcchHHHhhhcc
Q 007611 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 260 k~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.....|||+|.+++|||||++.|.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999874
No 494
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.97 E-value=0.34 Score=45.13 Aligned_cols=50 Identities=22% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCcH-HHHHHHHH-hCCCCceeEEeeccCCCC
Q 007611 141 KVIEVSDVILEVLDARDPLGTRCI-DMEKMVMK-AGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 141 kvie~sDVIleVlDARdPl~sr~~-~le~~i~~-~~~~K~lILVLNKiDLVp 190 (596)
.....+|.+|.|.|..++.+..+. .....+.. .....|+++|+||+||..
T Consensus 97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 345678999999998776432221 11122222 234688999999999964
No 495
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=89.96 E-value=0.27 Score=56.18 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCcHHHHHHHHHhCCCCceeEEeeccCCCC
Q 007611 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (596)
Q Consensus 135 ~~kel~kvie~sDVIleVlDARdPl~sr~~~le~~i~~~~~~K~lILVLNKiDLVp 190 (596)
|..|+..+|..+|-+|.|+||-.........+.+..... +.|.|+|+||+|...
T Consensus 98 F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 98 FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH--TCCEEEEEECSSSTT
T ss_pred cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEccccccC
Confidence 788999999999999999999877655555555554443 789999999999864
No 496
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.96 E-value=0.12 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
+.|+|+|.|++||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 497
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.94 E-value=0.13 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.8
Q ss_pred cceEEEeecCCCCCcchHHHhhhccc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~k 286 (596)
..-.++|+|..|+|||||++.|.|--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44579999999999999999999854
No 498
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.85 E-value=0.13 Score=47.67 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.5
Q ss_pred cceEEEeecCCCCCcchHHHhhhc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKR 284 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~ 284 (596)
+...|+|+|.|++||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 499
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.85 E-value=0.12 Score=49.00 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEeecCCCCCcchHHHhhhcc
Q 007611 263 ITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 263 i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
++|+|+|.|++||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 500
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.82 E-value=0.14 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred cceEEEeecCCCCCcchHHHhhhcc
Q 007611 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (596)
Q Consensus 261 ~~i~V~vVG~PNVGKSSLINsL~~~ 285 (596)
.++.|+|+|.|++||||+.+.|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999753
Done!