Query 007612
Match_columns 596
No_of_seqs 210 out of 2431
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 06:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 1.1E-30 3.6E-35 286.5 24.3 490 38-586 9-515 (524)
2 4aps_A DI-OR tripeptide H+ sym 100.0 5.7E-30 1.9E-34 278.2 29.5 445 37-580 9-478 (491)
3 1pw4_A Glycerol-3-phosphate tr 100.0 4.2E-28 1.4E-32 259.9 23.6 403 39-576 26-436 (451)
4 4gc0_A D-xylose-proton symport 100.0 2.2E-28 7.6E-33 265.5 16.6 416 76-590 54-479 (491)
5 3o7q_A L-fucose-proton symport 99.9 2.6E-25 8.9E-30 237.4 30.0 356 38-534 23-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 1.4E-23 4.8E-28 219.6 15.0 166 44-240 3-168 (375)
7 2cfq_A Lactose permease; trans 99.9 5.8E-23 2E-27 218.8 7.4 393 41-579 7-405 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.3E-13 4.5E-18 146.9 16.5 180 39-246 250-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 3.9E-12 1.3E-16 135.0 18.6 168 40-240 257-426 (438)
10 2cfq_A Lactose permease; trans 99.4 2.8E-12 9.5E-17 136.1 14.7 178 41-248 220-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 4.1E-11 1.4E-15 129.4 12.9 186 42-249 284-474 (491)
12 4gc0_A D-xylose-proton symport 99.1 3.8E-10 1.3E-14 121.6 14.0 183 42-250 277-466 (491)
13 2gfp_A EMRD, multidrug resista 98.9 3.8E-10 1.3E-14 117.2 4.1 164 41-233 199-363 (375)
14 2xut_A Proton/peptide symporte 98.3 1.3E-06 4.5E-11 94.7 11.0 138 391-575 59-200 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.1e-30 Score=286.53 Aligned_cols=490 Identities=23% Similarity=0.347 Sum_probs=287.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHH
Q 007612 38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQ------QNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTC 111 (596)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l 111 (596)
+++|.++.+++..++....+|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345667788889999999999999999999999999 99999999999999999999999999999933999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccc
Q 007612 112 AIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEG 191 (596)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 191 (596)
+++.++..++.+++.++ + .+.+.++++|++.|++.+...+...+++.|++|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---- 142 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIF---E-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHT---S-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT----
T ss_pred HHHHHHHHHHHHHHHHh---c-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc----
Confidence 99999999998888877 2 037789999999999999999999999999999988
Q ss_pred cchhhH---HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHH
Q 007612 192 HSKVAF---FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIV 268 (596)
Q Consensus 192 ~~r~~~---~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (596)
|++. +++++...++|..++|.+++++.+..+|+++|++.++..++..++.+...++.+++++++++..+..+.+.
T Consensus 143 --r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (524)
T 2xut_A 143 --KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR 220 (524)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence 7544 45589999999999999999998888999999988877666655555444433332222221111111111
Q ss_pred HHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCc-------ccCccchh
Q 007612 269 AATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWR-------LCPVTQVE 341 (596)
Q Consensus 269 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 341 (596)
...+++... ++................... .......+.......... .++..+.||+ .......+
T Consensus 221 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (524)
T 2xut_A 221 SALLTKVEG-KGNIGLVLALIGGVSAAYALV---NIPTLGIVAGLCCAMVLV---MGFVGAGASLQLERARKSHPDAAVD 293 (524)
T ss_dssp ------CTT-HHHHHHHHHHHHHHHHHHTGG---GTTTTCSSHHHHHHHHHH---HHHHHTGGGTHHHHSCCSCCSSSST
T ss_pred HHHhhhhcc-cCccchhhhhhhhhhhhhhhc---ccchhhhhhhhhhhhhhh---hcccccchhhHHhhhhccccHhHHH
Confidence 111111000 000000000000000000000 000000000000000000 0000001110 00111122
Q ss_pred hhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccC
Q 007612 342 EVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKN 421 (596)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~ 421 (596)
++++.+....++.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+..+|.+ +
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 368 (524)
T 2xut_A 294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG-V- 368 (524)
T ss_dssp TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC-C-
Confidence 3344444444445555555555555544433322222210 0 133445566667777888888876555445433 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCC
Q 007612 422 SKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAP 501 (596)
Q Consensus 422 ~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P 501 (596)
+.+..+.+.+|.++.+++++.++...... +.....+.+++++.+++.+++++...+..++++.|.+|
T Consensus 369 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 435 (524)
T 2xut_A 369 --KLTALRKMGAGIAITGLSWIVVGTIQLMM-----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAP 435 (524)
T ss_dssp ----CCHHHHHTHHHHHHHHHHTTTTTTTTT-----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 22356677788888888877665432110 00112456777888899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 007612 502 DGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPG-NLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCI 580 (596)
Q Consensus 502 ~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~ 580 (596)
++.||+++|+.++..++|+.+++.+.+.+.+.... +|.+. +. +.....|++.+++++++.++++++.++++++
T Consensus 436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT----EQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH----HHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999976542100 12100 00 0012237788888888888887777777665
Q ss_pred chhhhh
Q 007612 581 ELEAKC 586 (596)
Q Consensus 581 ~~~~~~ 586 (596)
+.++.+
T Consensus 510 ~~~~~~ 515 (524)
T 2xut_A 510 DHYRQA 515 (524)
T ss_dssp ------
T ss_pred hhhhhh
Confidence 554433
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=5.7e-30 Score=278.22 Aligned_cols=445 Identities=17% Similarity=0.258 Sum_probs=290.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHhhhHHHHhhh-ccCchHH
Q 007612 37 SGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRV-----LQQNNAEAANNVSKWTGTVYIFSLVGAFLSDS-YWGRFKT 110 (596)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr-~~Gr~~~ 110 (596)
++++|.++.+++..++....+|++.++++.|+++. +|++..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 45667889999999999999999999999999988 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccccc
Q 007612 111 CAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKE 190 (596)
Q Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 190 (596)
++++.++..++.++++++ + +.+.++++|++.|++.+...+...++++|++|+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~- 143 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP---F--------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC---C--------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH-
T ss_pred HHHHHHHHHHHHHHHHHh---h--------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc-
Confidence 999999999999888876 2 2677899999999999999999999999999987632
Q ss_pred ccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceecc---CCCC-ChhHHHHHH
Q 007612 191 GHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHF---KPSG-NPLARFCQV 266 (596)
Q Consensus 191 ~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~ 266 (596)
|++++++++.+.++|..++|.+++++.+..+|+++|++.++..+++.++.+...++..++ ++.. ....+..+.
T Consensus 144 ---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
T 4aps_A 144 ---RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL 220 (491)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHH
T ss_pred ---ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHH
Confidence 667888899999999999999999999989999999998776666655544433322211 1111 111111110
Q ss_pred HH--------------HHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCC
Q 007612 267 IV--------------AATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPW 332 (596)
Q Consensus 267 ~~--------------~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (596)
.. ........ + ..+...... ........... . . .|
T Consensus 221 ~~~~g~~l~~~~~~~~~~~~~~~~------~-----------------~~~~~~~~~-~~~~~~~~~~~-~-~-----~~ 269 (491)
T 4aps_A 221 LVKVSLAVAGFIAIIVVMNLVGWN------S-----------------LPAYINLLT-IVAIAIPVFYF-A-W-----MI 269 (491)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHSSC------C-----------------TTHHHHHHH-HHHHHHHHHHH-H-H-----HC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc------c-----------------cccchhhhh-HHHHHHHHHHH-H-H-----Hh
Confidence 00 00000000 0 000000000 00000000000 0 0 00
Q ss_pred cccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeec-cccccccccccCCccccccchhhHHHHHHhhhhhhh
Q 007612 333 RLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGA-AMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIE 411 (596)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (596)
+... .....+++......++.....++..+.+..+.+..... ..+.. ....+.+.....+..++..++.+++.+
T Consensus 270 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 344 (491)
T 4aps_A 270 SSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWT 344 (491)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHH
T ss_pred hccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHH
Confidence 0000 00012233333334444444444444444332211110 01111 123455666677777788888887766
Q ss_pred cccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhh
Q 007612 412 PLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVA 491 (596)
Q Consensus 412 ~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 491 (596)
|+.+|. ......+.+|.++.+++++.++...... . ...+.+.++.++.+++.+++.+...+.
T Consensus 345 r~~~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~ 406 (491)
T 4aps_A 345 AWKKNQ-------PSSPTKFAVGLMFAGLSFLLMAIPGALY---G--------TSGKVSPLWLVGSWALVILGEMLISPV 406 (491)
T ss_dssp HTTTC----------CHHHHHHHHHHHHHHHTTTHHHHHHC---C--------CCTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred HHhccC-------CCchHHHHHHHHHHHHHHHHHHHHHHhc---C--------CCCCccHHHHHHHHHHHHHHHHHHhHH
Confidence 554432 1245667788888888877665543110 0 011246677788889999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 007612 492 QLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYI 571 (596)
Q Consensus 492 ~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~ 571 (596)
.++++.|.+|++.||+++|+.++...+|+.+++.+.+.+.+ .++...|+..+++++++.++.+
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988775532 1234578888888888888777
Q ss_pred hhccccccc
Q 007612 572 ACAKWYKCI 580 (596)
Q Consensus 572 ~~~~~~~~~ 580 (596)
+..++.+++
T Consensus 470 ~~~~~~~~~ 478 (491)
T 4aps_A 470 FLSKRIQGL 478 (491)
T ss_dssp HC-------
T ss_pred HHHHHHHHH
Confidence 777665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=4.2e-28 Score=259.88 Aligned_cols=403 Identities=9% Similarity=-0.008 Sum_probs=260.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612 39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF 118 (596)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~ 118 (596)
+++.++..++..+......+.+.+.++.+. +++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 456677777777777777777777776554 566 9999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHh----hhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccch
Q 007612 119 VIGLVLLSL----SSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK 194 (596)
Q Consensus 119 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 194 (596)
+++.+++++ + + +.+.++++|++.|++.+...+...+++.|++|+++ |
T Consensus 103 ~~~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT---S--------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHHCHHHH---S--------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHHhhhhcc---c--------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 999999888 5 2 26678999999999999999999999999999988 9
Q ss_pred hhHHHHHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHh
Q 007612 195 VAFFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKK 273 (596)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (596)
++++++.+.+.++|..++|.+++++.+..+ |+++|++.++..++..++.++..++.++.....+.
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 219 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-------------- 219 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh--------------
Confidence 999999999999999999999999888888 99999988876665554444433332211100000
Q ss_pred hccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhh-HHH
Q 007612 274 WRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRL-LPI 352 (596)
Q Consensus 274 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 352 (596)
+ ++ +.++.+ + .. + +..++.+++........+.+.++.. +..
T Consensus 220 -------~-~~--~~~~~~-------------~-----~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (451)
T 1pw4_A 220 -------E-EY--KNDYPD-------------D-----YN---------E-KAEQELTAKQIFMQYVLPNKLLWYIAIAN 261 (451)
T ss_dssp -------T-TT--CCC-----------------------------------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred -------h-hh--cccccc-------------c-----ch---------h-hhhcccccccchHHHHHcCHHHHHHHHHH
Confidence 0 00 000000 0 00 0 0000001100000000111222222 222
Q ss_pred HHHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHH
Q 007612 353 WLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMG 432 (596)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ 432 (596)
++....+.....+.+ .+..+..+.+.. ..+.+.....++.++..++.+++.+|+.+ + ++..+.
T Consensus 262 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~--------~~~~~~ 324 (451)
T 1pw4_A 262 VFVYLLRYGILDWSP-TYLKEVKHFALD------KSSWAYFLYEYAGIPGTLLCGWMSDKVFR--G--------NRGATG 324 (451)
T ss_dssp HHHHHHHHHHHHHHH-HHBTTBSCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTST--T--------CHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C--------CchhHH
Confidence 222222222222222 122111111111 12233334445555555666655444311 2 223344
Q ss_pred HHHHHHH-HHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHH
Q 007612 433 IGLVIAI-VAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSAL 511 (596)
Q Consensus 433 ig~~l~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl 511 (596)
++..+.. ++++.+... .+.+.+......++.|++.+...+..++++.|.+|++.||+++|+
T Consensus 325 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 386 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 386 (451)
T ss_dssp HHHHHHHHHHHHHTTSC------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHH
Confidence 4544444 555444331 112455566677788888888888888999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccc
Q 007612 512 CMTSISL-GNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKW 576 (596)
Q Consensus 512 ~~~~~~l-g~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~ 576 (596)
.++...+ |+.+++.+.+.+.+. .+++..|++.+++.+++.++.++..++
T Consensus 387 ~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 387 TGLFGYLGGSVAASAIVGYTVDF----------------FGWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS----------------SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 999999999988762 235678888888888887777665443
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=2.2e-28 Score=265.50 Aligned_cols=416 Identities=13% Similarity=0.024 Sum_probs=237.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHH
Q 007612 76 NAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEIC 155 (596)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (596)
+.+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++......... ..........+..
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----DNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----SSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhHHHHHHhhhHH
Confidence 45678899999999999999999999997 99999999999999999998864110000000 0000000124588
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc--------ccchH
Q 007612 156 LFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE--------GMWAL 227 (596)
Q Consensus 156 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~--------~~~~~ 227 (596)
.++++|+++|+|.|+..+..+++++|..|++. |++..++.+.+..+|..+++.++..+... ..|++
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 99999999999999999999999999999999 99999999999999999998777655432 24555
Q ss_pred HHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCcccccccc
Q 007612 228 GFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGF 307 (596)
Q Consensus 228 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 307 (596)
.+.+..+..++.++..+ ..||+|+|+..+++.|++.+.+++....+..
T Consensus 202 ~~~~~~~~~~~~~~~~~--------------------------------~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~ 249 (491)
T 4gc0_A 202 MFASECIPALLFLMLLY--------------------------------TVPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 (491)
T ss_dssp HHHTTHHHHHHHHHHGG--------------------------------GSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhhhhh--------------------------------cCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence 55544433332222211 1677777777766555444433332211110
Q ss_pred chhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhh-hhccccceeEeeecccccccccccc
Q 007612 308 KFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSV-VFTQMASLFVEQGAAMKTTVSNFRI 386 (596)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (596)
...... .++ .....++...+ ......++................ ....+.+.+... ...+ ..
T Consensus 250 ~~~~~~----~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~ 312 (491)
T 4gc0_A 250 TQAVQE----IKH--SLDHGRKTGGR----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGAS------TD 312 (491)
T ss_dssp HHHHHH----HHH--HHHHHHHHTTH----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCC------HH
T ss_pred HHHHHH----HHH--HHHhhhhhhhH----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCC------cc
Confidence 000000 000 00000000000 000011111111111111111000 000011111100 0000 00
Q ss_pred CCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCC
Q 007612 387 PPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGA 466 (596)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (596)
..........+..++...+...+ .+|.+ +++.+..+....+++++.++.....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l----~dr~G--------rr~~~~~~~~~~~~~~~~l~~~~~~--------------- 365 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMT----VDKFG--------RKPLQIIGALGMAIGMFSLGTAFYT--------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHC--------SHHHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHH----HHhhc--------CcchhccchHHHHHHHHHHHHHHhc---------------
Confidence 01111222233333344444444 34444 3334666777777766655543211
Q ss_pred ceeehhHHHHHHHHHHHHH-HhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007612 467 SSLSIFWQVPQYALIGASE-VFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPG 545 (596)
Q Consensus 467 ~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~ 545 (596)
..+.+..+....+...+. ....+..+.+..|.+|.+.|++++|+.++.+++++.+++.+.+.+.+.....
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~-------- 436 (491)
T 4gc0_A 366 -QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV-------- 436 (491)
T ss_dssp -TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH--------
T ss_pred -ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 112222222222222222 2334777899999999999999999999999999999998887664321000
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhcc
Q 007612 546 NLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESN 590 (596)
Q Consensus 546 ~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (596)
...+....|++++++++++.++.+++.||+|++++||.++..+
T Consensus 437 --~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 437 --AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 0112234688889999999999999999999999998765544
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=2.6e-25 Score=237.36 Aligned_cols=356 Identities=11% Similarity=0.040 Sum_probs=234.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612 38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI 117 (596)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~ 117 (596)
++++.++.++...+........+.+.+| ++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 4455666666666666666665555555 56789999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHH---HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccch
Q 007612 118 FVIGLVLL---SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK 194 (596)
Q Consensus 118 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 194 (596)
.+++.+++ .++ + +.+.++++|++.|++.+...+...++++|++|+++ |
T Consensus 101 ~~~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r 151 (438)
T 3o7q_A 101 YALGAALFWPAAEI---M--------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------G 151 (438)
T ss_dssp HHHHHHHHHHHHHT---T--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------H
T ss_pred HHHHHHHHHhcccc---c--------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------H
Confidence 99999888 444 2 38889999999999999999999999999999999 9
Q ss_pred hhHHHHHHHHHhHHHHHHhhhhhhhc-cccc-------------------------chHHHHHHHHHHHHHHHHHHhcC-
Q 007612 195 VAFFSYFYLALNLGSLFSNTILGYFE-DEGM-------------------------WALGFWVSTGSAFAALVLFLAGT- 247 (596)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~i~g~l~-~~~~-------------------------~~~~f~~~~~~~~~~~~~~~~~~- 247 (596)
++.+++.+...++|..++|.+++++. +..+ |++.|++.++..++..++.+...
T Consensus 152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 231 (438)
T 3o7q_A 152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF 231 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999987 5554 89999876655544444333321
Q ss_pred cceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccC
Q 007612 248 TRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQG 327 (596)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (596)
++.+++++++++ ..+. ..
T Consensus 232 p~~~~~~~~~~~----------------------------------------------~~~~--~~-------------- 249 (438)
T 3o7q_A 232 PALQSDNHSDAK----------------------------------------------QGSF--SA-------------- 249 (438)
T ss_dssp CCCTTTCCCCSS----------------------------------------------TTSH--HH--------------
T ss_pred Cccccccccccc----------------------------------------------ccch--hh--------------
Confidence 111000000000 0000 00
Q ss_pred CCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhh
Q 007612 328 CSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYR 407 (596)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 407 (596)
+++ ...++++.+...+..++..........+.+.++..+..+.+.. ..+.+.....++.++..++.+
T Consensus 250 ---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 250 ---SLS----RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG------FAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp ---HHH----HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hHH----HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh------HHHHHHHHHHHHHHHHHHHHH
Confidence 000 0001111111112122222222222222222212211122211 122233333444555555555
Q ss_pred hhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHh
Q 007612 408 RVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVF 487 (596)
Q Consensus 408 ~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 487 (596)
++. +|.+ +++.+.++.++.+++++..... +..+.+..+++.+++.+.
T Consensus 317 ~l~----~r~~--------~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 317 WLI----SRFA--------PHKVLAAYALIAMALCLISAFA---------------------GGHVGLIALTLCSAFMSI 363 (438)
T ss_dssp HHH----HHSC--------HHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHTT
T ss_pred HHH----HHhc--------chHHHHHHHHHHHHHHHHHHHc---------------------CCcHHHHHHHHHHHHHHH
Confidence 544 4443 4455677777777776655542 222334455778888888
Q ss_pred hhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007612 488 MYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKIS 534 (596)
Q Consensus 488 ~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~ 534 (596)
..+..+++..|..|++ +++++++.. .+.+|+.+++.+.+.+.+..
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999977 999999877 67799999999999887744
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=1.4e-23 Score=219.56 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007612 44 IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLV 123 (596)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~ 123 (596)
++++...+........+.+.++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 44556666666666666666665 4578999999999999999999999999999999997 999999999999999998
Q ss_pred HHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHH
Q 007612 124 LLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYL 203 (596)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 203 (596)
++.++ ++.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+.
T Consensus 81 ~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 131 (375)
T 2gfp_A 81 VAVTT-----------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHH
T ss_pred HHHHh-----------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHH
Confidence 88887 348889999999999999999999999999999988 9999999999
Q ss_pred HHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHH
Q 007612 204 ALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL 240 (596)
Q Consensus 204 ~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~ 240 (596)
..++|..++|.+++++.+..+|++.|++.++..++..
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999999999999988899999988776554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=5.8e-23 Score=218.81 Aligned_cols=393 Identities=12% Similarity=0.023 Sum_probs=222.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612 41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI 120 (596)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 120 (596)
|.++......+.....+..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566677767777777777788999999988999999999999999999999999999999997 999999988776654
Q ss_pred HHHHH---HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612 121 GLVLL---SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF 197 (596)
Q Consensus 121 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 197 (596)
+...+ .+. +.+ ...++.++.+.+++.|...+...+...+..++..+ .++..
T Consensus 86 ~~~~~~~~~~~---~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~ 139 (417)
T 2cfq_A 86 MFAPFFIFIFG---PLL-------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFE 139 (417)
T ss_dssp CHHHHHHHTHH---HHH-------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCC
T ss_pred HHHHHHHHHHH---HHH-------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccc
Confidence 32111 121 000 00123344444444444444444444444433221 15566
Q ss_pred HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccc
Q 007612 198 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVH 277 (596)
Q Consensus 198 ~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (596)
++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+..+++ +++..
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~------------------- 195 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSA------------------- 195 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSS-------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----ccccc-------------------
Confidence 777777789999999999998876 579998887654433222221111111 00000
Q ss_pred cCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHH-HHHh
Q 007612 278 LSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPI-WLCT 356 (596)
Q Consensus 278 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 356 (596)
+.++.++ . + .+.....+.. +..+ .+..+..... +...
T Consensus 196 ---------~~~~~~~---~-~----~~~~~~~~~~------------------------~~~~-~~~~~~~~~~~~~~~ 233 (417)
T 2cfq_A 196 ---------TVANAVG---A-N----HSAFSLKLAL------------------------ELFR-QPKLWFLSLYVIGVS 233 (417)
T ss_dssp ---------CSSSSSS---S-C----CCCCCHHHHH------------------------HHTT-CHHHHHHHHHHHHHH
T ss_pred ---------ccccccc---c-c----cccccHHHHH------------------------HHhc-CCchhhHHHHHHHHH
Confidence 0000000 0 0 0000000000 0001 1222222111 1111
Q ss_pred HhHhhhhccccceeEeeecccccccccccc-CCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHH
Q 007612 357 ILYSVVFTQMASLFVEQGAAMKTTVSNFRI-PPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGL 435 (596)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~ 435 (596)
..+.....+++.++... .... +.+. ..+....++.+..++...+.+++ .||.+ +++.+.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g--------~~~~l~~~~ 296 (417)
T 2cfq_A 234 CTYDVFDQQFANFFTSF---FATG--EQGTRVFGYVTTMGELLNASIMFFAPLI----INRIG--------GKNALLLAG 296 (417)
T ss_dssp HHHHHHHHHHHHHHHHT---SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHH----HHHHC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHH----HHHhc--------HHHHHHHHH
Confidence 12222111222121110 0000 0000 00122222333334444445544 44444 344566777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHH-HHH
Q 007612 436 VIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSAL-CMT 514 (596)
Q Consensus 436 ~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~ 514 (596)
.+.+++++..+.. .+.+.+++..++.+++.....+..+.++.|.+|++.||++.++ +++
T Consensus 297 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 356 (417)
T 2cfq_A 297 TIMSVRIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356 (417)
T ss_dssp HHHHHHHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 7777766555431 1344455555666777666677778899999999999999999 488
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 007612 515 SISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKC 579 (596)
Q Consensus 515 ~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~ 579 (596)
.+++|+.++|.+.+.+.+ ..++...|.+.+++++++.++.++..++++.
T Consensus 357 ~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 357 FKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp THHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 889999999999997654 1245667888888888887776665655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.52 E-value=1.3e-13 Score=146.90 Aligned_cols=180 Identities=16% Similarity=0.096 Sum_probs=150.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhcc--CchHHHHHHHH
Q 007612 39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYW--GRFKTCAIFQG 116 (596)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~--Gr~~~l~~~~~ 116 (596)
+.+.++..++..++....++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++|| + |||+.+.++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~ 328 (451)
T 1pw4_A 250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFM 328 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHH
Confidence 34678888888888999999999999999988899999999999999999999999999999999 6 88888887776
Q ss_pred HHH-HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612 117 IFV-IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV 195 (596)
Q Consensus 117 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 195 (596)
+.. ++.+++.+. +. .+...+.+..++.|++.+...+...+++.|.+|++. |+
T Consensus 329 ~~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 381 (451)
T 1pw4_A 329 TLVTIATIVYWMN---PA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG 381 (451)
T ss_dssp HHHHHHHHHTTSC---CT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HH
T ss_pred HHHHHHHHHHHHh---cc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hh
Confidence 655 555444433 11 236667777788889888888888999999999998 99
Q ss_pred hHHHHHHHHHhH-HHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhc
Q 007612 196 AFFSYFYLALNL-GSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAG 246 (596)
Q Consensus 196 ~~~~~~~~~~~l-g~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~ 246 (596)
+++++++...++ |..++|.+.|++.+..||+..|++.++..+++.++.+..
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999998877766665555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=3.9e-12 Score=134.99 Aligned_cols=168 Identities=12% Similarity=0.040 Sum_probs=135.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612 40 WVAGIIILLNQGLATLAFFGVGVNLVLF-LTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF 118 (596)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~ 118 (596)
.+.++..++..++....++++..+++.| +++.+|++..++++..+...++..++.+++|+++||+ |||+.+.++.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3566777777788888888888999999 8888899999999999999999999999999999997 9999999998888
Q ss_pred HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612 119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF 198 (596)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 198 (596)
.++.+++.+. ++ ... ++..++.|++.+...|...++..|.+|++ ++.+.
T Consensus 336 ~~~~~~~~~~---~~--------------------~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 384 (438)
T 3o7q_A 336 MALCLISAFA---GG--------------------HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGS 384 (438)
T ss_dssp HHHHHHHHHC---CH--------------------HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHH
T ss_pred HHHHHHHHHc---CC--------------------cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchh
Confidence 8887776665 11 333 33447788888988999999999998844 44555
Q ss_pred HHHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHH
Q 007612 199 SYFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAAL 240 (596)
Q Consensus 199 ~~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~ 240 (596)
++.. ...+|+.++|.+.|++.+..| ++..|++.++..++..
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 5544 567999999999999999888 9999987665544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.38 E-value=2.8e-12 Score=136.07 Aligned_cols=178 Identities=7% Similarity=-0.013 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612 41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQ---NNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI 117 (596)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~ 117 (596)
+.++...+..++....++...++++.|+.+.++. +....+...+...++..++.++.|+++||+ |||+++.++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 4455444444444555555667788888776653 234456677777778888999999999997 999999888877
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612 118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF 197 (596)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 197 (596)
.+++.+++.+. + +...+++..++.+++.+...+....+..|.+|++. |+++
T Consensus 299 ~~~~~~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~ 349 (417)
T 2cfq_A 299 MSVRIIGSSFA---T--------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATI 349 (417)
T ss_dssp HHHHHHHHTTC---C--------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHH
T ss_pred HHHHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Confidence 77766555544 1 24555566666777766666777889999999998 9999
Q ss_pred HHH-HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612 198 FSY-FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTT 248 (596)
Q Consensus 198 ~~~-~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 248 (596)
.++ ++....+|+.++|.++|++.+..|+...|.+.++..+++.++.+...+
T Consensus 350 ~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 998 578888999999999999988888888888877766666555444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.22 E-value=4.1e-11 Score=129.40 Aligned_cols=186 Identities=12% Similarity=0.046 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHH-----HHHH
Q 007612 42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCA-----IFQG 116 (596)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~-----~~~~ 116 (596)
..+..++..+.....+.....+++.|+.+.++.+..+.+...+...++..++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 345555555666666777778888999988888877788888888999999999999999997 9886554 6666
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612 117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA 196 (596)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 196 (596)
+..++.+++.+...... .....+...+.+..++.|++.+...+...+++.|.+|++. |++
T Consensus 363 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 422 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQ 422 (491)
T ss_dssp HHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSS
T ss_pred HHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence 66666555554311000 0011235667777788999999999999999999999999 999
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcc
Q 007612 197 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTR 249 (596)
Q Consensus 197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 249 (596)
+.++++...++|..++|.+.+++.+ .++.+.|++.++..+++.++.+...++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998866 467777777766666555555555444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.11 E-value=3.8e-10 Score=121.64 Aligned_cols=183 Identities=12% Similarity=0.063 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612 42 AGIIILLNQGLATL-AFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI 120 (596)
Q Consensus 42 ~~~~~~~~~~~~~~-~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 120 (596)
.........++... ..+.+..+ .+++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYY-APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhc-chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 33334444444333 33444444 4455667888888888888888889999999999999997 999999999888888
Q ss_pred HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612 121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY 200 (596)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 200 (596)
+.+.++....... ......+.+..+..+++ ....|..+.+.+|.+|++. |+++.++
T Consensus 355 ~~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~ 410 (491)
T 4gc0_A 355 GMFSLGTAFYTQA-----------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAI 410 (491)
T ss_dssp HHHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHH
T ss_pred HHHHHHHHHhccc-----------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHH
Confidence 7776665422111 11112222222223333 3345778899999999999 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhhcc------cccchHHHHHHHHHHHHHHHHHHhcCcce
Q 007612 201 FYLALNLGSLFSNTILGYFED------EGMWALGFWVSTGSAFAALVLFLAGTTRY 250 (596)
Q Consensus 201 ~~~~~~lg~~~~~~i~g~l~~------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 250 (596)
.+....+|+.+++.+.+.+.+ ..++.+.|++.+++.+++.+..++..||.
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 999999999999887776643 23456677777766666666665555554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.92 E-value=3.8e-10 Score=117.23 Aligned_cols=164 Identities=9% Similarity=-0.013 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH-HH
Q 007612 41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI-FV 119 (596)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~-~~ 119 (596)
|.++...+..++.....+.+..+++.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ |++ +.++... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 5677777777888888888889999999988999999999999999999999999999999996 772 2223222 22
Q ss_pred HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612 120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS 199 (596)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 199 (596)
.+..+...... + ..+.+.+++..++.|++.+...+...++..|.+| ++ |+++.+
T Consensus 276 ~~~~~~~~~~~-~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g 329 (375)
T 2gfp_A 276 AGLLMWIPDWF-G------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGA 329 (375)
T ss_dssp TSSSSSHHHHH-H------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHH
T ss_pred HHHHHHHHhhh-c------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHH
Confidence 22221111100 0 0235566677788899999999999999999998 67 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHH
Q 007612 200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVST 233 (596)
Q Consensus 200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~ 233 (596)
+.+...++|..++|.+.|.+.+..+|...+.+..
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999988777877776644
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.35 E-value=1.3e-06 Score=94.67 Aligned_cols=138 Identities=17% Similarity=0.073 Sum_probs=99.0
Q ss_pred ccccchhhHHHHHHhhhhhhhcccccc-cccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCcee
Q 007612 391 MSSFDILSVAAFIFLYRRVIEPLAGGI-RKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSL 469 (596)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (596)
+.....++..+..++.+++. ||+ + +++.+.++.++.+++.+..+... .
T Consensus 59 ~~~~~~~~~~~~~~~~G~l~----dr~~g--------~r~~~~~~~~~~~~~~~~~~~~~-------------------~ 107 (524)
T 2xut_A 59 VFHSFVIGVYFFPLLGGWIA----DRFFG--------KYNTILWLSLIYCVGHAFLAIFE-------------------H 107 (524)
T ss_dssp HHHHHHHHHHHTHHHHHHHH----TTSSC--------SHHHHHHHHHHHHHHHHHHHHTS-------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhc--------chHHHHHHHHHHHHHHHHHHHhc-------------------c
Confidence 33444455556666666554 444 4 34457788888888877766531 1
Q ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 007612 470 SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSAL---CMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGN 546 (596)
Q Consensus 470 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~ 546 (596)
+.+.+++..++.|++.+...+...+++.|.+|++.|++++++ .+....+|..+++.+.+.+.+
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-------------- 173 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK-------------- 173 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH--------------
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 566677788899999999999999999999999999877776 888889999999988887654
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhhcc
Q 007612 547 LNKGHLDRFYFLLAGLTTVDFVVYIACAK 575 (596)
Q Consensus 547 ~~~~~~~~~f~~~a~i~~i~~~~~~~~~~ 575 (596)
..+++..|++.+++.++..+.+++..+
T Consensus 174 --~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 174 --NFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp --TSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred --cccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 123567888877777776665554433
Done!