Query 007613
Match_columns 596
No_of_seqs 775 out of 3946
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 12:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.4E-87 3E-92 721.4 69.6 572 22-593 367-938 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 4.6E-70 9.9E-75 598.3 45.9 519 29-579 55-660 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.9E-65 4.2E-70 561.7 49.0 507 27-571 150-727 (857)
4 PLN03218 maturation of RBCL 1; 100.0 9.2E-63 2E-67 529.9 60.1 418 30-454 411-857 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.6E-61 7.9E-66 515.7 50.6 454 73-569 99-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.8E-59 3.8E-64 502.7 46.4 453 35-504 133-612 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-26 3.3E-31 259.7 62.5 515 31-569 335-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-26 7E-31 257.1 61.8 513 29-562 367-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 4E-21 8.7E-26 193.6 34.5 301 101-409 44-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 3.1E-20 6.7E-25 187.1 36.1 303 134-445 42-354 (389)
11 PRK11447 cellulose synthase su 99.9 2.3E-17 5.1E-22 186.4 60.7 285 21-312 58-427 (1157)
12 PRK11447 cellulose synthase su 99.9 1.4E-18 3E-23 196.3 50.1 387 34-438 278-700 (1157)
13 KOG4626 O-linked N-acetylgluco 99.9 9E-20 1.9E-24 175.1 33.4 392 28-437 51-450 (966)
14 PRK15174 Vi polysaccharide exp 99.9 8.4E-18 1.8E-22 177.7 47.9 330 96-438 46-381 (656)
15 KOG4626 O-linked N-acetylgluco 99.9 3.4E-19 7.5E-24 171.1 32.8 387 37-444 94-489 (966)
16 PRK15174 Vi polysaccharide exp 99.9 1.4E-17 3E-22 176.1 45.2 322 35-367 52-380 (656)
17 TIGR00990 3a0801s09 mitochondr 99.9 6.5E-17 1.4E-21 171.7 49.7 394 32-438 134-571 (615)
18 PRK10049 pgaA outer membrane p 99.9 4.5E-17 9.7E-22 176.0 46.3 405 26-445 15-461 (765)
19 TIGR00990 3a0801s09 mitochondr 99.8 4.8E-16 1.1E-20 165.0 50.5 347 96-454 131-552 (615)
20 KOG4422 Uncharacterized conser 99.8 5.8E-16 1.3E-20 142.9 42.4 421 9-440 100-592 (625)
21 PRK14574 hmsH outer membrane p 99.8 5.2E-15 1.1E-19 157.0 50.5 411 21-444 30-483 (822)
22 PRK10049 pgaA outer membrane p 99.8 5.6E-15 1.2E-19 159.8 45.0 364 68-444 22-426 (765)
23 PRK09782 bacteriophage N4 rece 99.8 5.6E-14 1.2E-18 152.3 51.5 505 37-571 56-711 (987)
24 PRK09782 bacteriophage N4 rece 99.8 4.8E-13 1.1E-17 145.1 55.2 144 39-191 122-276 (987)
25 KOG2002 TPR-containing nuclear 99.7 1.4E-13 3E-18 140.0 41.7 427 20-452 265-759 (1018)
26 KOG2002 TPR-containing nuclear 99.7 2.8E-13 6.1E-18 137.8 41.3 424 20-454 228-726 (1018)
27 PRK14574 hmsH outer membrane p 99.7 1.8E-12 3.9E-17 137.8 47.7 396 70-474 43-482 (822)
28 KOG4422 Uncharacterized conser 99.7 8.3E-12 1.8E-16 115.9 41.2 323 92-421 116-480 (625)
29 KOG2003 TPR repeat-containing 99.7 1.4E-13 3.1E-18 128.1 29.2 409 37-456 213-706 (840)
30 KOG2076 RNA polymerase III tra 99.6 1.1E-11 2.3E-16 125.7 39.7 372 25-401 139-553 (895)
31 KOG1155 Anaphase-promoting com 99.6 4.2E-11 9.2E-16 112.5 38.0 256 171-436 236-493 (559)
32 PF13429 TPR_15: Tetratricopep 99.6 8.9E-15 1.9E-19 139.6 12.6 257 100-364 16-273 (280)
33 TIGR00540 hemY_coli hemY prote 99.6 1.2E-11 2.7E-16 124.2 34.6 290 73-366 96-397 (409)
34 KOG0495 HAT repeat protein [RN 99.6 6.5E-10 1.4E-14 108.8 44.3 451 30-504 411-872 (913)
35 KOG1915 Cell cycle control pro 99.6 7.3E-10 1.6E-14 104.5 42.6 402 37-453 85-516 (677)
36 KOG2076 RNA polymerase III tra 99.6 8.7E-11 1.9E-15 119.3 39.2 360 72-436 150-553 (895)
37 PF13429 TPR_15: Tetratricopep 99.6 2.2E-14 4.7E-19 136.9 12.8 257 32-296 15-275 (280)
38 PRK10747 putative protoheme IX 99.6 1.8E-11 3.8E-16 122.3 33.8 285 105-402 97-389 (398)
39 KOG1155 Anaphase-promoting com 99.6 4.3E-10 9.3E-15 105.9 40.2 308 134-453 234-549 (559)
40 PRK10747 putative protoheme IX 99.6 2.2E-11 4.8E-16 121.6 34.2 283 140-437 97-389 (398)
41 KOG0495 HAT repeat protein [RN 99.5 1.9E-08 4.1E-13 98.9 51.2 416 24-456 375-799 (913)
42 TIGR00540 hemY_coli hemY prote 99.5 5.4E-11 1.2E-15 119.5 34.3 288 103-400 95-396 (409)
43 COG2956 Predicted N-acetylgluc 99.5 4E-10 8.6E-15 101.3 33.6 221 105-333 48-278 (389)
44 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.4E-16 121.9 24.7 283 142-438 334-620 (638)
45 KOG2003 TPR repeat-containing 99.5 2.3E-10 5E-15 107.1 31.5 418 37-464 161-682 (840)
46 KOG1126 DNA-binding cell divis 99.5 2.4E-11 5.1E-16 119.6 26.0 283 107-403 334-620 (638)
47 COG3071 HemY Uncharacterized e 99.5 8.8E-10 1.9E-14 102.3 32.4 285 105-401 97-388 (400)
48 COG2956 Predicted N-acetylgluc 99.4 1E-09 2.2E-14 98.8 30.8 297 130-436 39-345 (389)
49 KOG0547 Translocase of outer m 99.4 6.8E-09 1.5E-13 98.6 36.7 387 33-437 123-565 (606)
50 KOG1173 Anaphase-promoting com 99.4 6.8E-10 1.5E-14 107.2 30.6 372 71-454 151-532 (611)
51 KOG1915 Cell cycle control pro 99.4 4.1E-08 8.8E-13 93.0 41.6 363 65-439 77-467 (677)
52 COG3071 HemY Uncharacterized e 99.4 2.8E-09 6.1E-14 99.0 32.0 288 74-373 97-395 (400)
53 KOG4318 Bicoid mRNA stability 99.4 3.7E-10 8.1E-15 114.2 27.7 264 89-389 22-286 (1088)
54 KOG2047 mRNA splicing factor [ 99.4 5.4E-08 1.2E-12 95.6 40.0 393 35-436 112-613 (835)
55 PF13041 PPR_2: PPR repeat fam 99.3 3E-12 6.5E-17 85.6 6.4 50 372-421 1-50 (50)
56 PRK12370 invasion protein regu 99.3 1.7E-09 3.7E-14 113.1 29.9 248 74-334 274-536 (553)
57 KOG1173 Anaphase-promoting com 99.3 1.3E-08 2.9E-13 98.5 32.4 286 123-418 240-531 (611)
58 TIGR02521 type_IV_pilW type IV 99.3 2.4E-09 5.1E-14 99.4 27.2 200 234-437 31-231 (234)
59 PRK12370 invasion protein regu 99.3 3.9E-09 8.5E-14 110.3 31.4 249 195-454 254-519 (553)
60 TIGR02521 type_IV_pilW type IV 99.3 2.7E-09 5.8E-14 99.0 27.1 164 129-296 33-196 (234)
61 PF13041 PPR_2: PPR repeat fam 99.3 9.1E-12 2E-16 83.3 6.7 49 160-208 1-49 (50)
62 KOG1174 Anaphase-promoting com 99.3 2.5E-07 5.4E-12 86.3 36.8 400 26-437 44-499 (564)
63 KOG1129 TPR repeat-containing 99.3 8.3E-10 1.8E-14 99.3 19.5 228 202-437 228-457 (478)
64 KOG4318 Bicoid mRNA stability 99.3 2.6E-10 5.7E-15 115.3 18.3 273 113-424 11-286 (1088)
65 PF12569 NARP1: NMDA receptor- 99.2 2.4E-07 5.3E-12 93.7 35.2 179 254-437 131-333 (517)
66 KOG1156 N-terminal acetyltrans 99.2 3.4E-06 7.4E-11 83.6 41.2 390 37-440 19-470 (700)
67 KOG2376 Signal recognition par 99.2 7.4E-06 1.6E-10 80.4 44.1 419 26-469 13-518 (652)
68 KOG1129 TPR repeat-containing 99.2 3.1E-09 6.7E-14 95.7 18.3 234 165-408 226-461 (478)
69 KOG0547 Translocase of outer m 99.2 6.1E-07 1.3E-11 85.7 33.9 185 246-437 338-531 (606)
70 PF12569 NARP1: NMDA receptor- 99.2 1.4E-07 3E-12 95.4 32.0 288 71-366 14-332 (517)
71 KOG1840 Kinesin light chain [C 99.1 1.3E-07 2.8E-12 94.4 29.9 169 127-295 199-393 (508)
72 KOG3785 Uncharacterized conser 99.1 5.2E-06 1.1E-10 76.2 36.6 411 32-472 29-485 (557)
73 KOG1840 Kinesin light chain [C 99.1 1.1E-07 2.4E-12 95.0 28.6 240 197-436 199-477 (508)
74 KOG3785 Uncharacterized conser 99.1 2.9E-06 6.2E-11 77.8 34.1 401 27-454 57-504 (557)
75 PRK11189 lipoprotein NlpI; Pro 99.1 3.6E-07 7.8E-12 87.5 29.0 219 211-439 40-266 (296)
76 KOG2047 mRNA splicing factor [ 99.0 2.9E-05 6.2E-10 77.0 48.3 454 26-503 24-585 (835)
77 PRK11189 lipoprotein NlpI; Pro 99.0 3E-07 6.6E-12 88.0 27.4 149 107-261 41-192 (296)
78 COG3063 PilF Tfp pilus assembl 99.0 4.8E-07 1E-11 78.2 24.5 198 236-437 37-235 (250)
79 KOG1156 N-terminal acetyltrans 99.0 2.3E-05 5E-10 77.8 39.2 351 73-439 19-435 (700)
80 COG3063 PilF Tfp pilus assembl 99.0 4.8E-07 1E-11 78.2 23.8 198 130-332 38-235 (250)
81 KOG0624 dsRNA-activated protei 99.0 1E-05 2.2E-10 74.1 32.5 316 22-368 35-370 (504)
82 KOG2376 Signal recognition par 99.0 1.5E-05 3.3E-10 78.2 35.5 392 22-435 43-517 (652)
83 cd05804 StaR_like StaR_like; a 99.0 8.9E-06 1.9E-10 80.8 35.4 303 129-437 8-335 (355)
84 KOG1174 Anaphase-promoting com 99.0 2.5E-05 5.5E-10 73.3 34.7 292 105-409 209-504 (564)
85 cd05804 StaR_like StaR_like; a 98.9 1E-05 2.2E-10 80.4 34.5 197 203-402 120-335 (355)
86 KOG4162 Predicted calmodulin-b 98.9 1.9E-05 4.1E-10 80.1 35.3 374 58-437 320-782 (799)
87 PRK04841 transcriptional regul 98.9 5.5E-05 1.2E-09 85.4 41.0 337 102-438 384-760 (903)
88 KOG0548 Molecular co-chaperone 98.8 1.3E-05 2.9E-10 77.9 29.9 400 32-456 9-468 (539)
89 PF04733 Coatomer_E: Coatomer 98.8 3E-07 6.5E-12 86.7 17.3 129 198-333 132-265 (290)
90 KOG1127 TPR repeat-containing 98.7 5.6E-05 1.2E-09 78.7 32.4 75 38-114 471-548 (1238)
91 PRK04841 transcriptional regul 98.7 0.00018 3.8E-09 81.3 38.3 331 73-403 386-760 (903)
92 KOG0624 dsRNA-activated protei 98.7 0.00028 6E-09 65.0 33.6 314 58-402 35-369 (504)
93 KOG0548 Molecular co-chaperone 98.7 0.00035 7.7E-09 68.3 34.0 352 71-445 12-426 (539)
94 PF12854 PPR_1: PPR repeat 98.7 2.9E-08 6.2E-13 59.4 4.2 32 157-188 2-33 (34)
95 KOG4340 Uncharacterized conser 98.7 7.4E-05 1.6E-09 67.2 27.0 313 30-364 15-335 (459)
96 KOG1914 mRNA cleavage and poly 98.7 0.00041 8.9E-09 67.8 34.0 393 50-452 11-480 (656)
97 PF12854 PPR_1: PPR repeat 98.7 2.6E-08 5.7E-13 59.5 3.7 32 369-400 2-33 (34)
98 PF04733 Coatomer_E: Coatomer 98.7 1E-06 2.2E-11 83.2 16.2 148 244-402 112-264 (290)
99 KOG0985 Vesicle coat protein c 98.7 0.0005 1.1E-08 72.0 36.1 321 24-399 983-1304(1666)
100 KOG4162 Predicted calmodulin-b 98.6 0.00028 6E-09 71.9 33.3 361 35-402 333-782 (799)
101 PLN02789 farnesyltranstransfer 98.6 6.3E-05 1.4E-09 72.0 27.0 211 98-316 43-267 (320)
102 KOG1070 rRNA processing protei 98.6 3.3E-05 7.2E-10 83.1 26.8 227 196-429 1457-1691(1710)
103 KOG1070 rRNA processing protei 98.6 3.7E-05 7.9E-10 82.8 26.6 225 91-321 1457-1688(1710)
104 KOG3616 Selective LIM binding 98.6 0.00018 4E-09 72.4 29.2 195 133-363 738-932 (1636)
105 KOG1128 Uncharacterized conser 98.5 7.6E-06 1.6E-10 82.3 19.2 214 130-366 401-614 (777)
106 KOG1125 TPR repeat-containing 98.5 2E-05 4.2E-10 77.5 21.5 222 138-365 296-524 (579)
107 KOG1128 Uncharacterized conser 98.5 8E-06 1.7E-10 82.2 18.5 213 166-401 402-614 (777)
108 KOG3617 WD40 and TPR repeat-co 98.5 0.0016 3.4E-08 67.0 34.4 89 241-329 1042-1170(1416)
109 PLN02789 farnesyltranstransfer 98.5 0.00015 3.2E-09 69.5 26.5 204 175-386 50-267 (320)
110 KOG1914 mRNA cleavage and poly 98.5 0.0015 3.2E-08 64.1 39.4 406 26-437 17-500 (656)
111 KOG1125 TPR repeat-containing 98.5 3.1E-05 6.8E-10 76.1 21.5 221 101-332 294-526 (579)
112 KOG0985 Vesicle coat protein c 98.5 0.0014 3.1E-08 68.7 33.6 246 139-435 1060-1305(1666)
113 COG5010 TadD Flp pilus assembl 98.5 4.3E-05 9.2E-10 67.9 19.6 124 94-220 102-225 (257)
114 KOG3616 Selective LIM binding 98.5 0.00038 8.2E-09 70.3 28.0 311 75-435 545-876 (1636)
115 TIGR03302 OM_YfiO outer membra 98.5 3.1E-05 6.7E-10 71.8 20.0 185 89-298 30-232 (235)
116 PRK10370 formate-dependent nit 98.4 6.3E-05 1.4E-09 67.0 20.2 28 339-366 73-100 (198)
117 TIGR03302 OM_YfiO outer membra 98.4 6.7E-05 1.5E-09 69.5 21.2 63 127-191 33-99 (235)
118 KOG4340 Uncharacterized conser 98.4 0.00023 5E-09 64.1 22.7 314 95-434 13-335 (459)
119 PRK10370 formate-dependent nit 98.4 9.6E-05 2.1E-09 65.8 20.8 116 249-367 54-172 (198)
120 KOG3617 WD40 and TPR repeat-co 98.4 0.0045 9.7E-08 63.8 35.3 286 36-365 811-1171(1416)
121 COG5010 TadD Flp pilus assembl 98.4 0.00015 3.1E-09 64.6 20.4 156 203-364 72-227 (257)
122 PRK14720 transcript cleavage f 98.3 0.00038 8.1E-09 74.6 26.7 147 26-191 32-178 (906)
123 PRK15359 type III secretion sy 98.3 3.4E-05 7.4E-10 64.9 15.5 95 95-191 27-121 (144)
124 KOG3081 Vesicle coat complex C 98.3 0.00068 1.5E-08 60.4 23.2 107 207-320 147-257 (299)
125 COG4783 Putative Zn-dependent 98.3 0.0027 5.7E-08 61.8 29.2 242 24-298 201-454 (484)
126 COG4783 Putative Zn-dependent 98.3 0.0048 1E-07 60.1 30.7 162 271-453 308-471 (484)
127 PRK15359 type III secretion sy 98.3 6.9E-05 1.5E-09 63.0 15.8 86 314-401 34-119 (144)
128 PRK15179 Vi polysaccharide bio 98.3 0.00064 1.4E-08 72.1 26.2 183 230-422 82-268 (694)
129 PRK15179 Vi polysaccharide bio 98.2 0.00091 2E-08 70.9 25.7 235 127-387 28-268 (694)
130 PRK14720 transcript cleavage f 98.2 0.0021 4.6E-08 69.0 27.5 239 89-385 28-268 (906)
131 TIGR02552 LcrH_SycD type III s 98.2 0.00012 2.6E-09 61.1 15.0 87 313-401 26-112 (135)
132 KOG3081 Vesicle coat complex C 98.2 0.0051 1.1E-07 55.1 26.6 246 173-437 19-270 (299)
133 TIGR00756 PPR pentatricopeptid 98.1 3.8E-06 8.2E-11 51.1 4.1 33 376-408 2-34 (35)
134 KOG2053 Mitochondrial inherita 98.1 0.021 4.5E-07 59.9 43.9 93 342-436 439-534 (932)
135 TIGR00756 PPR pentatricopeptid 98.1 5.5E-06 1.2E-10 50.3 4.2 33 164-196 2-34 (35)
136 TIGR02552 LcrH_SycD type III s 98.1 0.00021 4.5E-09 59.6 14.9 93 130-224 20-112 (135)
137 KOG2041 WD40 repeat protein [G 98.0 0.0034 7.3E-08 63.4 24.4 373 77-492 679-1107(1189)
138 KOG3060 Uncharacterized conser 98.0 0.0062 1.3E-07 54.1 23.3 186 176-367 26-219 (289)
139 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.5E-10 48.5 4.1 33 163-195 2-34 (34)
140 PF13812 PPR_3: Pentatricopept 98.0 9.3E-06 2E-10 48.9 3.7 32 376-407 3-34 (34)
141 KOG1127 TPR repeat-containing 98.0 0.038 8.3E-07 58.6 35.7 183 143-332 474-658 (1238)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00069 1.5E-08 66.3 16.9 119 310-435 175-294 (395)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.001 2.3E-08 65.1 16.4 120 240-365 175-294 (395)
144 PF09976 TPR_21: Tetratricopep 97.8 0.0012 2.5E-08 55.8 14.5 20 344-363 123-142 (145)
145 PF09976 TPR_21: Tetratricopep 97.8 0.0021 4.6E-08 54.2 15.9 114 105-221 24-142 (145)
146 PF10037 MRP-S27: Mitochondria 97.8 0.00043 9.3E-09 68.0 13.0 121 266-386 63-185 (429)
147 KOG3060 Uncharacterized conser 97.8 0.027 5.9E-07 50.2 23.7 127 130-262 55-182 (289)
148 PF10037 MRP-S27: Mitochondria 97.8 0.00063 1.4E-08 66.9 13.9 124 194-317 63-186 (429)
149 PF01535 PPR: PPR repeat; Int 97.7 3.1E-05 6.7E-10 45.4 3.0 29 376-404 2-30 (31)
150 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9E-10 44.8 3.5 29 164-192 2-30 (31)
151 PF08579 RPM2: Mitochondrial r 97.7 0.00061 1.3E-08 52.3 10.1 77 97-173 30-115 (120)
152 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0025 5.4E-08 51.6 13.9 20 204-223 46-65 (119)
153 PF08579 RPM2: Mitochondrial r 97.6 0.00084 1.8E-08 51.5 9.7 80 130-209 28-116 (120)
154 cd00189 TPR Tetratricopeptide 97.6 0.0014 3E-08 50.2 11.7 91 97-189 5-95 (100)
155 PRK15363 pathogenicity island 97.6 0.0015 3.3E-08 54.2 11.4 85 34-120 44-131 (157)
156 cd00189 TPR Tetratricopeptide 97.5 0.0017 3.7E-08 49.6 11.3 93 343-437 4-96 (100)
157 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.004 8.6E-08 50.3 13.7 97 95-191 5-105 (119)
158 KOG2053 Mitochondrial inherita 97.5 0.19 4.1E-06 53.0 44.5 225 34-264 18-256 (932)
159 PLN03088 SGT1, suppressor of 97.4 0.0044 9.5E-08 61.0 14.9 85 316-402 14-98 (356)
160 PF05843 Suf: Suppressor of fo 97.4 0.004 8.7E-08 59.0 14.1 128 307-437 4-135 (280)
161 PF05843 Suf: Suppressor of fo 97.4 0.0038 8.2E-08 59.1 13.7 130 199-333 3-136 (280)
162 PF06239 ECSIT: Evolutionarily 97.4 0.0015 3.3E-08 56.8 9.6 105 89-212 44-153 (228)
163 PF06239 ECSIT: Evolutionarily 97.4 0.0028 6.1E-08 55.2 11.0 100 338-456 46-150 (228)
164 PLN03088 SGT1, suppressor of 97.4 0.0062 1.4E-07 59.9 15.0 88 102-191 12-99 (356)
165 PRK15363 pathogenicity island 97.3 0.0076 1.6E-07 50.1 12.8 94 95-190 38-131 (157)
166 PRK02603 photosystem I assembl 97.3 0.016 3.4E-07 50.6 15.3 84 271-355 37-122 (172)
167 PRK10153 DNA-binding transcrip 97.3 0.021 4.6E-07 58.8 18.0 70 373-446 419-488 (517)
168 PRK10153 DNA-binding transcrip 97.2 0.024 5.3E-07 58.4 18.2 146 263-413 331-490 (517)
169 KOG0553 TPR repeat-containing 97.2 0.0046 1E-07 56.5 11.3 100 349-453 91-191 (304)
170 PF12895 Apc3: Anaphase-promot 97.2 0.00085 1.9E-08 50.4 5.6 47 106-152 3-50 (84)
171 CHL00033 ycf3 photosystem I as 97.2 0.014 3.1E-07 50.6 14.1 81 269-350 35-117 (168)
172 PRK02603 photosystem I assembl 97.2 0.02 4.4E-07 49.8 14.9 92 91-183 34-127 (172)
173 PF14938 SNAP: Soluble NSF att 97.2 0.038 8.2E-07 52.6 17.7 150 310-477 100-266 (282)
174 PF14559 TPR_19: Tetratricopep 97.1 0.0015 3.2E-08 46.7 6.2 62 35-98 1-64 (68)
175 KOG0550 Molecular chaperone (D 97.1 0.27 5.8E-06 47.3 22.6 168 242-438 177-350 (486)
176 PRK10866 outer membrane biogen 97.1 0.12 2.6E-06 47.7 20.1 176 241-436 39-239 (243)
177 PF12895 Apc3: Anaphase-promot 97.1 0.0012 2.7E-08 49.5 5.8 19 275-293 31-49 (84)
178 PRK10866 outer membrane biogen 97.1 0.11 2.4E-06 47.9 19.6 58 344-401 180-239 (243)
179 CHL00033 ycf3 photosystem I as 97.1 0.015 3.3E-07 50.4 12.9 80 93-173 36-117 (168)
180 PF12688 TPR_5: Tetratrico pep 97.1 0.037 8E-07 44.3 13.8 90 277-366 9-102 (120)
181 KOG2796 Uncharacterized conser 97.0 0.23 5E-06 44.7 20.8 133 93-226 178-315 (366)
182 KOG0553 TPR repeat-containing 97.0 0.01 2.2E-07 54.3 11.5 101 314-418 91-191 (304)
183 KOG2796 Uncharacterized conser 97.0 0.26 5.6E-06 44.4 20.9 144 270-416 178-326 (366)
184 COG4235 Cytochrome c biogenesi 97.0 0.043 9.3E-07 50.6 15.1 30 338-367 155-184 (287)
185 PF14559 TPR_19: Tetratricopep 97.0 0.0033 7.2E-08 44.9 6.5 51 105-156 4-54 (68)
186 KOG0550 Molecular chaperone (D 96.9 0.41 8.8E-06 46.1 24.5 91 277-368 257-350 (486)
187 PF12688 TPR_5: Tetratrico pep 96.9 0.058 1.3E-06 43.2 13.5 56 170-225 9-66 (120)
188 KOG1538 Uncharacterized conser 96.8 0.061 1.3E-06 54.3 16.0 257 126-437 555-845 (1081)
189 PF13432 TPR_16: Tetratricopep 96.7 0.0065 1.4E-07 42.9 6.5 53 348-401 6-58 (65)
190 PF14938 SNAP: Soluble NSF att 96.7 0.41 8.9E-06 45.5 20.8 207 29-261 39-264 (282)
191 PF04840 Vps16_C: Vps16, C-ter 96.7 0.59 1.3E-05 44.9 27.4 107 273-399 181-287 (319)
192 COG4235 Cytochrome c biogenesi 96.7 0.062 1.3E-06 49.6 13.7 101 124-226 153-256 (287)
193 PF13432 TPR_16: Tetratricopep 96.7 0.0077 1.7E-07 42.5 6.5 18 169-186 38-55 (65)
194 KOG2041 WD40 repeat protein [G 96.6 1 2.2E-05 46.4 29.6 341 60-436 691-1084(1189)
195 PF13414 TPR_11: TPR repeat; P 96.4 0.015 3.3E-07 41.5 6.9 56 238-294 7-63 (69)
196 PF13414 TPR_11: TPR repeat; P 96.4 0.016 3.4E-07 41.4 7.0 62 92-154 3-65 (69)
197 PF13525 YfiO: Outer membrane 96.4 0.44 9.6E-06 42.7 17.8 20 347-366 149-168 (203)
198 PF13525 YfiO: Outer membrane 96.4 0.43 9.3E-06 42.8 17.7 178 241-429 12-198 (203)
199 KOG1130 Predicted G-alpha GTPa 96.4 0.091 2E-06 50.2 13.2 265 101-366 26-342 (639)
200 COG4700 Uncharacterized protei 96.3 0.57 1.2E-05 40.0 19.0 103 159-263 86-189 (251)
201 PRK10803 tol-pal system protei 96.3 0.076 1.6E-06 49.5 12.2 23 202-224 185-207 (263)
202 PF04840 Vps16_C: Vps16, C-ter 96.3 1.2 2.6E-05 42.9 28.9 107 306-432 179-285 (319)
203 PRK10803 tol-pal system protei 96.2 0.13 2.8E-06 47.9 13.1 97 128-226 144-246 (263)
204 PRK15331 chaperone protein Sic 96.2 0.064 1.4E-06 45.0 9.9 84 35-120 47-133 (165)
205 KOG1538 Uncharacterized conser 96.2 0.98 2.1E-05 46.1 19.5 42 41-86 616-657 (1081)
206 COG4700 Uncharacterized protei 96.1 0.78 1.7E-05 39.2 18.5 103 194-298 86-189 (251)
207 PF03704 BTAD: Bacterial trans 96.0 0.042 9.1E-07 46.3 8.6 55 133-188 68-122 (146)
208 PF13371 TPR_9: Tetratricopept 96.0 0.048 1E-06 39.4 7.7 50 139-189 7-56 (73)
209 PF03704 BTAD: Bacterial trans 96.0 0.052 1.1E-06 45.8 8.9 72 94-166 64-140 (146)
210 PF13371 TPR_9: Tetratricopept 95.9 0.056 1.2E-06 39.0 7.9 57 100-157 3-59 (73)
211 KOG2280 Vacuolar assembly/sort 95.9 2.8 6E-05 43.9 25.0 105 309-432 689-793 (829)
212 COG4649 Uncharacterized protei 95.9 0.37 8E-06 40.5 12.7 123 33-155 66-195 (221)
213 PF12921 ATP13: Mitochondrial 95.9 0.19 4.1E-06 40.8 11.1 53 192-245 47-99 (126)
214 PF04053 Coatomer_WDAD: Coatom 95.8 0.58 1.3E-05 47.3 16.7 169 24-223 260-428 (443)
215 KOG3941 Intermediate in Toll s 95.8 0.084 1.8E-06 47.9 9.4 113 82-213 55-174 (406)
216 KOG1130 Predicted G-alpha GTPa 95.7 0.12 2.5E-06 49.5 10.4 266 135-402 25-343 (639)
217 PF12921 ATP13: Mitochondrial 95.7 0.24 5.1E-06 40.2 11.0 80 198-277 3-96 (126)
218 COG3898 Uncharacterized membra 95.6 2.3 4.9E-05 40.9 32.5 126 311-443 270-397 (531)
219 PF07079 DUF1347: Protein of u 95.6 2.5 5.5E-05 41.5 42.3 135 37-174 18-179 (549)
220 PRK15331 chaperone protein Sic 95.4 1.4 3E-05 37.2 15.0 90 276-367 44-133 (165)
221 PF09205 DUF1955: Domain of un 95.3 1.2 2.5E-05 35.8 13.5 62 307-369 89-150 (161)
222 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.39 8.4E-06 47.4 12.9 38 18-55 68-105 (453)
223 PF04053 Coatomer_WDAD: Coatom 95.2 0.77 1.7E-05 46.4 15.1 132 128-294 296-427 (443)
224 KOG3941 Intermediate in Toll s 95.1 0.19 4.1E-06 45.7 9.4 48 389-436 138-186 (406)
225 smart00299 CLH Clathrin heavy 95.1 1.7 3.6E-05 36.2 15.6 40 134-174 14-53 (140)
226 COG3898 Uncharacterized membra 95.0 3.6 7.7E-05 39.7 31.3 286 74-378 97-399 (531)
227 COG3118 Thioredoxin domain-con 95.0 1.3 2.9E-05 41.0 14.6 140 33-176 142-286 (304)
228 PF13424 TPR_12: Tetratricopep 95.0 0.078 1.7E-06 38.9 5.8 24 342-365 8-31 (78)
229 PF13281 DUF4071: Domain of un 94.9 4.1 8.9E-05 39.8 19.4 32 407-438 303-334 (374)
230 PF13424 TPR_12: Tetratricopep 94.8 0.096 2.1E-06 38.4 6.0 64 374-437 5-74 (78)
231 COG3118 Thioredoxin domain-con 94.8 3.4 7.4E-05 38.4 18.0 143 138-286 145-289 (304)
232 KOG2114 Vacuolar assembly/sort 94.8 5.7 0.00012 42.3 19.9 174 33-223 342-516 (933)
233 PF13281 DUF4071: Domain of un 94.7 4.7 0.0001 39.4 20.9 72 101-172 150-227 (374)
234 KOG1258 mRNA processing protei 94.7 5.9 0.00013 40.6 34.9 402 26-454 42-485 (577)
235 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.19 4.2E-06 49.5 8.7 99 336-440 72-176 (453)
236 smart00299 CLH Clathrin heavy 94.5 2.2 4.7E-05 35.5 14.2 124 239-385 12-136 (140)
237 COG5107 RNA14 Pre-mRNA 3'-end 94.5 5.4 0.00012 39.3 35.4 95 339-436 397-493 (660)
238 KOG0543 FKBP-type peptidyl-pro 94.4 0.76 1.7E-05 44.4 12.0 135 32-190 215-354 (397)
239 PF10300 DUF3808: Protein of u 93.9 3.1 6.6E-05 42.8 16.4 178 146-332 176-375 (468)
240 KOG0543 FKBP-type peptidyl-pro 93.8 1.5 3.2E-05 42.5 12.7 96 270-367 258-354 (397)
241 PRK11906 transcriptional regul 93.6 8.3 0.00018 38.5 17.8 80 286-367 321-400 (458)
242 KOG2610 Uncharacterized conser 93.5 2.1 4.6E-05 40.2 12.7 115 174-293 115-233 (491)
243 KOG1920 IkappaB kinase complex 93.5 14 0.00029 41.3 20.3 55 241-296 972-1026(1265)
244 KOG2280 Vacuolar assembly/sort 93.4 12 0.00026 39.5 31.9 302 120-436 425-771 (829)
245 PF10300 DUF3808: Protein of u 93.3 11 0.00024 38.8 23.7 179 181-367 176-375 (468)
246 PF09205 DUF1955: Domain of un 93.3 3.7 7.9E-05 33.1 13.0 62 273-335 90-151 (161)
247 COG1729 Uncharacterized protei 93.2 1.6 3.4E-05 40.1 11.3 98 165-263 145-244 (262)
248 COG1729 Uncharacterized protei 93.0 1.7 3.7E-05 39.8 11.3 99 199-298 144-244 (262)
249 KOG4555 TPR repeat-containing 93.0 4 8.7E-05 32.7 11.8 91 101-192 52-145 (175)
250 COG3629 DnrI DNA-binding trans 92.9 1.3 2.9E-05 41.2 10.6 76 130-206 156-236 (280)
251 PF13512 TPR_18: Tetratricopep 92.8 4.3 9.3E-05 33.5 12.2 78 99-176 17-96 (142)
252 COG4105 ComL DNA uptake lipopr 92.6 8.1 0.00018 35.2 20.8 22 346-367 174-195 (254)
253 COG5107 RNA14 Pre-mRNA 3'-end 92.3 13 0.00028 36.8 34.1 146 304-455 397-546 (660)
254 KOG4555 TPR repeat-containing 92.2 5.1 0.00011 32.2 11.9 90 279-369 53-145 (175)
255 COG3629 DnrI DNA-binding trans 92.1 2 4.3E-05 40.0 10.7 75 340-415 154-233 (280)
256 PF13428 TPR_14: Tetratricopep 92.0 0.66 1.4E-05 29.4 5.5 21 242-262 9-29 (44)
257 PF13512 TPR_18: Tetratricopep 92.0 5.2 0.00011 33.0 11.8 24 240-263 53-76 (142)
258 PF08631 SPO22: Meiosis protei 92.0 11 0.00025 35.6 25.1 62 199-263 86-150 (278)
259 PF04184 ST7: ST7 protein; In 92.0 13 0.00028 37.4 16.5 60 343-402 263-323 (539)
260 PF13428 TPR_14: Tetratricopep 92.0 0.6 1.3E-05 29.6 5.3 29 271-299 3-31 (44)
261 PF13170 DUF4003: Protein of u 91.9 5 0.00011 38.2 13.5 47 145-191 80-132 (297)
262 PRK11906 transcriptional regul 91.9 15 0.00033 36.8 17.5 143 75-222 272-432 (458)
263 PF13170 DUF4003: Protein of u 91.7 12 0.00027 35.6 17.9 130 286-417 79-225 (297)
264 KOG2610 Uncharacterized conser 91.7 6 0.00013 37.4 13.0 151 139-294 115-272 (491)
265 COG0457 NrfG FOG: TPR repeat [ 91.6 9.8 0.00021 34.1 30.1 199 235-437 60-264 (291)
266 TIGR02508 type_III_yscG type I 91.5 4.6 0.0001 30.6 9.9 88 38-130 18-105 (115)
267 COG4785 NlpI Lipoprotein NlpI, 91.2 10 0.00022 33.6 17.2 178 248-438 79-266 (297)
268 PF10602 RPN7: 26S proteasome 90.9 5.1 0.00011 34.8 11.6 61 129-189 38-100 (177)
269 KOG1941 Acetylcholine receptor 90.8 16 0.00034 35.1 15.2 128 239-366 127-273 (518)
270 PF04184 ST7: ST7 protein; In 90.6 21 0.00045 36.0 16.8 61 308-368 263-324 (539)
271 PF02284 COX5A: Cytochrome c o 90.5 3.9 8.4E-05 31.2 8.8 61 392-454 28-89 (108)
272 KOG0276 Vesicle coat complex C 90.5 4 8.6E-05 41.7 11.5 155 31-222 592-746 (794)
273 COG4105 ComL DNA uptake lipopr 90.3 14 0.00031 33.7 18.5 174 244-437 44-232 (254)
274 PF07575 Nucleopor_Nup85: Nup8 90.1 28 0.00061 36.9 18.7 162 272-453 375-539 (566)
275 PF07035 Mic1: Colon cancer-as 90.1 11 0.00024 32.2 15.1 134 183-333 15-149 (167)
276 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 4.1 9E-05 30.7 8.5 64 389-454 22-86 (103)
277 KOG2066 Vacuolar assembly/sort 89.5 32 0.0007 36.7 26.4 103 32-139 363-467 (846)
278 PF09613 HrpB1_HrpK: Bacterial 89.2 13 0.00027 31.5 12.7 51 104-156 22-73 (160)
279 PF10602 RPN7: 26S proteasome 89.0 6.9 0.00015 34.0 10.9 63 270-332 37-101 (177)
280 KOG1258 mRNA processing protei 88.7 32 0.00069 35.5 30.4 366 37-424 91-490 (577)
281 PRK09687 putative lyase; Provi 88.6 22 0.00048 33.6 29.9 236 87-349 32-277 (280)
282 KOG1586 Protein required for f 88.5 16 0.00035 32.8 12.4 20 351-370 166-185 (288)
283 PF13176 TPR_7: Tetratricopept 88.2 1.2 2.5E-05 26.7 4.0 23 165-187 2-24 (36)
284 PF07035 Mic1: Colon cancer-as 87.9 16 0.00035 31.2 15.0 22 378-399 93-114 (167)
285 COG4649 Uncharacterized protei 87.6 17 0.00037 31.0 15.6 132 93-225 60-195 (221)
286 PF13176 TPR_7: Tetratricopept 87.2 1.4 3.1E-05 26.3 4.0 23 342-364 2-24 (36)
287 PF13929 mRNA_stabil: mRNA sta 87.1 26 0.00057 32.8 15.6 132 284-415 143-284 (292)
288 PF07079 DUF1347: Protein of u 87.0 35 0.00075 34.1 36.6 397 40-451 60-532 (549)
289 COG0457 NrfG FOG: TPR repeat [ 87.0 22 0.00047 31.7 30.0 200 199-402 61-264 (291)
290 COG2976 Uncharacterized protei 86.7 13 0.00028 32.4 10.6 127 28-157 53-189 (207)
291 PF13431 TPR_17: Tetratricopep 86.5 1.3 2.8E-05 26.2 3.4 24 266-289 10-33 (34)
292 PF00515 TPR_1: Tetratricopept 86.2 2 4.3E-05 25.1 4.2 27 411-437 3-29 (34)
293 PF09613 HrpB1_HrpK: Bacterial 86.2 20 0.00042 30.3 13.9 71 135-209 18-89 (160)
294 KOG4570 Uncharacterized conser 86.0 12 0.00026 35.2 10.7 49 354-402 115-163 (418)
295 PF00515 TPR_1: Tetratricopept 85.7 1.8 3.8E-05 25.3 3.8 27 376-402 3-29 (34)
296 PF08631 SPO22: Meiosis protei 85.1 35 0.00075 32.3 27.9 160 103-268 4-191 (278)
297 TIGR02561 HrpB1_HrpK type III 85.0 21 0.00045 29.7 11.1 49 104-156 22-73 (153)
298 KOG4570 Uncharacterized conser 84.4 12 0.00025 35.2 9.9 102 194-297 61-163 (418)
299 KOG2114 Vacuolar assembly/sort 84.4 66 0.0014 34.9 18.9 139 33-189 376-517 (933)
300 KOG1920 IkappaB kinase complex 83.0 90 0.0019 35.4 29.3 133 274-434 913-1051(1265)
301 PF13431 TPR_17: Tetratricopep 82.7 2.2 4.9E-05 25.1 3.3 21 161-181 12-32 (34)
302 PF11207 DUF2989: Protein of u 82.4 15 0.00033 32.2 9.5 73 180-253 124-197 (203)
303 PF07719 TPR_2: Tetratricopept 81.7 3.9 8.5E-05 23.6 4.2 26 412-437 4-29 (34)
304 PF07719 TPR_2: Tetratricopept 81.0 3.5 7.6E-05 23.9 3.8 26 377-402 4-29 (34)
305 KOG0276 Vesicle coat complex C 80.3 49 0.0011 34.3 13.2 99 173-294 648-746 (794)
306 PRK11619 lytic murein transgly 80.2 92 0.002 33.6 39.2 164 250-433 295-463 (644)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 80.1 16 0.00034 27.7 7.5 46 109-154 24-69 (103)
308 PF09477 Type_III_YscG: Bacter 79.7 26 0.00057 27.1 9.2 82 37-122 18-99 (116)
309 COG3947 Response regulator con 79.6 54 0.0012 30.7 15.3 59 272-331 282-340 (361)
310 KOG1550 Extracellular protein 79.4 90 0.0019 33.1 26.6 183 108-300 228-428 (552)
311 TIGR02561 HrpB1_HrpK type III 79.4 35 0.00077 28.4 10.7 51 37-89 22-72 (153)
312 PF13762 MNE1: Mitochondrial s 79.3 35 0.00077 28.3 10.7 80 377-456 42-127 (145)
313 KOG4648 Uncharacterized conser 78.9 12 0.00026 35.5 8.1 83 73-156 109-194 (536)
314 PF13374 TPR_10: Tetratricopep 78.6 4.7 0.0001 24.6 4.1 23 377-399 5-27 (42)
315 TIGR02508 type_III_yscG type I 78.4 28 0.0006 26.6 8.5 85 108-200 21-105 (115)
316 COG4785 NlpI Lipoprotein NlpI, 78.2 50 0.0011 29.5 17.6 65 91-156 98-162 (297)
317 PF13374 TPR_10: Tetratricopep 78.2 5.5 0.00012 24.3 4.3 26 164-189 4-29 (42)
318 PF10345 Cohesin_load: Cohesin 77.5 1.1E+02 0.0023 33.0 36.7 180 43-223 39-251 (608)
319 PF00637 Clathrin: Region in C 76.8 0.83 1.8E-05 38.2 0.1 84 345-435 13-96 (143)
320 PF06552 TOM20_plant: Plant sp 76.8 20 0.00043 30.9 8.2 59 392-454 53-123 (186)
321 COG2976 Uncharacterized protei 76.1 54 0.0012 28.8 12.5 88 205-299 97-189 (207)
322 KOG1585 Protein required for f 75.4 65 0.0014 29.4 17.4 24 95-118 34-57 (308)
323 KOG1941 Acetylcholine receptor 75.2 83 0.0018 30.5 18.2 166 271-436 85-273 (518)
324 KOG1550 Extracellular protein 75.1 1.2E+02 0.0026 32.2 26.6 179 143-335 228-428 (552)
325 PF00637 Clathrin: Region in C 75.1 1.5 3.2E-05 36.7 1.2 53 99-151 14-66 (143)
326 PRK09687 putative lyase; Provi 75.0 77 0.0017 30.0 30.7 136 268-419 141-277 (280)
327 PF06552 TOM20_plant: Plant sp 75.0 55 0.0012 28.3 10.4 46 390-443 96-141 (186)
328 COG4455 ImpE Protein of avirul 74.7 25 0.00054 31.3 8.3 53 134-187 8-60 (273)
329 KOG1585 Protein required for f 72.8 76 0.0017 29.0 18.7 205 27-257 33-250 (308)
330 COG5159 RPN6 26S proteasome re 72.7 75 0.0016 29.7 11.2 133 279-411 13-166 (421)
331 KOG4077 Cytochrome c oxidase, 72.6 27 0.00058 28.0 7.3 61 392-453 67-127 (149)
332 COG4455 ImpE Protein of avirul 71.6 33 0.00071 30.6 8.4 54 168-222 7-60 (273)
333 PF13181 TPR_8: Tetratricopept 71.5 7.7 0.00017 22.4 3.5 26 412-437 4-29 (34)
334 PF13762 MNE1: Mitochondrial s 71.1 60 0.0013 27.0 10.4 82 342-423 42-129 (145)
335 TIGR03504 FimV_Cterm FimV C-te 70.7 10 0.00022 24.0 3.9 24 415-438 5-28 (44)
336 COG1747 Uncharacterized N-term 70.0 1.4E+02 0.0029 30.7 24.8 182 90-280 64-250 (711)
337 PF02284 COX5A: Cytochrome c o 68.5 52 0.0011 25.3 9.4 46 287-332 28-73 (108)
338 PF14853 Fis1_TPR_C: Fis1 C-te 68.0 28 0.0006 23.1 5.7 37 415-453 7-43 (53)
339 COG3947 Response regulator con 67.8 1.1E+02 0.0024 28.8 16.1 70 377-447 282-356 (361)
340 PF07721 TPR_4: Tetratricopept 67.8 8.9 0.00019 20.8 2.9 18 345-362 7-24 (26)
341 PRK15180 Vi polysaccharide bio 66.8 61 0.0013 32.6 10.0 123 207-334 299-421 (831)
342 KOG4234 TPR repeat-containing 66.6 67 0.0014 28.3 9.1 22 277-298 176-197 (271)
343 cd08819 CARD_MDA5_2 Caspase ac 66.6 46 0.001 24.7 7.1 34 317-355 49-82 (88)
344 PF09477 Type_III_YscG: Bacter 66.1 61 0.0013 25.2 8.6 80 106-192 20-99 (116)
345 PF13174 TPR_6: Tetratricopept 65.9 9.9 0.00021 21.6 3.1 18 172-189 10-27 (33)
346 PF13181 TPR_8: Tetratricopept 65.4 19 0.00042 20.6 4.4 27 271-297 3-29 (34)
347 PF02259 FAT: FAT domain; Int 65.4 1.4E+02 0.003 29.2 23.3 27 271-297 148-174 (352)
348 PF08311 Mad3_BUB1_I: Mad3/BUB 64.2 39 0.00084 27.4 7.2 42 43-84 81-122 (126)
349 KOG2471 TPR repeat-containing 63.5 1.8E+02 0.0038 29.7 13.5 116 314-431 250-394 (696)
350 PHA02875 ankyrin repeat protei 61.6 1.9E+02 0.004 29.2 14.2 12 172-183 75-86 (413)
351 KOG2297 Predicted translation 61.6 1.5E+02 0.0032 28.1 19.6 74 276-359 262-341 (412)
352 PF11207 DUF2989: Protein of u 61.2 1.2E+02 0.0026 26.9 14.8 72 144-216 123-197 (203)
353 PF07163 Pex26: Pex26 protein; 61.1 1.2E+02 0.0027 28.3 10.3 85 99-185 90-181 (309)
354 TIGR03504 FimV_Cterm FimV C-te 61.1 20 0.00044 22.7 3.9 20 170-189 7-26 (44)
355 KOG4234 TPR repeat-containing 60.8 1.2E+02 0.0026 26.8 10.0 91 315-409 106-201 (271)
356 KOG4648 Uncharacterized conser 60.6 54 0.0012 31.4 8.1 48 102-150 107-154 (536)
357 PF04097 Nic96: Nup93/Nic96; 60.1 2.5E+02 0.0054 30.3 14.6 43 167-210 116-158 (613)
358 KOG0890 Protein kinase of the 59.8 4.4E+02 0.0095 33.0 22.5 118 132-259 1388-1508(2382)
359 PF07163 Pex26: Pex26 protein; 59.1 1.3E+02 0.0028 28.2 10.0 50 348-397 127-181 (309)
360 PF02847 MA3: MA3 domain; Int 58.2 89 0.0019 24.5 8.5 65 378-444 6-72 (113)
361 PF08424 NRDE-2: NRDE-2, neces 58.1 1.9E+02 0.004 28.1 16.7 78 144-223 48-128 (321)
362 KOG0403 Neoplastic transformat 57.9 2.1E+02 0.0046 28.7 16.3 25 165-189 348-372 (645)
363 PF13929 mRNA_stabil: mRNA sta 57.5 1.7E+02 0.0037 27.6 21.9 58 231-288 199-257 (292)
364 PF04190 DUF410: Protein of un 57.3 1.7E+02 0.0036 27.4 15.5 25 126-150 89-113 (260)
365 PF14561 TPR_20: Tetratricopep 55.1 62 0.0013 24.4 6.4 36 20-55 17-52 (90)
366 KOG1464 COP9 signalosome, subu 54.2 1.8E+02 0.004 26.9 17.1 48 142-189 42-92 (440)
367 PF10579 Rapsyn_N: Rapsyn N-te 53.6 49 0.0011 24.1 5.2 44 105-148 19-64 (80)
368 PF11663 Toxin_YhaV: Toxin wit 52.3 18 0.00039 29.4 3.2 30 387-418 108-137 (140)
369 COG1747 Uncharacterized N-term 52.0 2.9E+02 0.0062 28.5 24.4 179 159-348 63-248 (711)
370 PF11848 DUF3368: Domain of un 51.8 51 0.0011 21.3 4.8 33 420-452 13-45 (48)
371 PF10255 Paf67: RNA polymerase 51.5 2.2E+02 0.0049 28.5 11.3 60 130-189 125-191 (404)
372 KOG2396 HAT (Half-A-TPR) repea 50.9 2.9E+02 0.0064 28.3 36.4 243 180-437 300-558 (568)
373 PF11663 Toxin_YhaV: Toxin wit 49.7 21 0.00046 29.0 3.2 31 139-171 107-137 (140)
374 KOG3807 Predicted membrane pro 49.5 2.5E+02 0.0053 27.0 12.2 56 167-224 280-338 (556)
375 KOG4077 Cytochrome c oxidase, 49.4 1.3E+02 0.0028 24.3 7.4 46 288-333 68-113 (149)
376 cd08819 CARD_MDA5_2 Caspase ac 49.2 94 0.002 23.2 6.2 34 105-143 49-82 (88)
377 PF11848 DUF3368: Domain of un 49.2 69 0.0015 20.7 5.1 26 141-166 16-41 (48)
378 smart00028 TPR Tetratricopepti 49.1 35 0.00076 18.2 3.6 24 166-189 5-28 (34)
379 KOG3677 RNA polymerase I-assoc 48.4 2.9E+02 0.0063 27.5 11.3 62 200-261 238-299 (525)
380 PF10579 Rapsyn_N: Rapsyn N-te 46.0 81 0.0018 23.0 5.3 15 283-297 20-34 (80)
381 COG5108 RPO41 Mitochondrial DN 44.2 2E+02 0.0043 30.5 9.7 75 309-386 33-115 (1117)
382 PF14853 Fis1_TPR_C: Fis1 C-te 43.9 77 0.0017 21.0 4.7 29 381-411 8-36 (53)
383 COG2909 MalT ATP-dependent tra 43.8 5E+02 0.011 28.9 26.6 87 138-224 426-524 (894)
384 KOG0890 Protein kinase of the 43.7 7.7E+02 0.017 31.1 25.7 62 304-368 1670-1731(2382)
385 PF14689 SPOB_a: Sensor_kinase 43.3 66 0.0014 22.1 4.6 20 168-187 29-48 (62)
386 PF08424 NRDE-2: NRDE-2, neces 42.7 3.3E+02 0.0071 26.5 17.4 62 251-314 48-109 (321)
387 PF10366 Vps39_1: Vacuolar sor 42.4 1.7E+02 0.0036 23.0 7.7 27 271-297 41-67 (108)
388 PF09868 DUF2095: Uncharacteri 41.4 1E+02 0.0022 24.1 5.6 33 133-166 67-99 (128)
389 KOG4507 Uncharacterized conser 40.9 1E+02 0.0022 32.0 7.1 86 105-191 620-705 (886)
390 PF11846 DUF3366: Domain of un 40.3 1.4E+02 0.0031 26.2 7.6 33 405-437 140-172 (193)
391 PRK15180 Vi polysaccharide bio 40.2 4.2E+02 0.0091 27.0 31.9 130 24-157 288-421 (831)
392 PHA02875 ankyrin repeat protei 40.2 4E+02 0.0087 26.8 15.9 38 138-179 10-49 (413)
393 smart00777 Mad3_BUB1_I Mad3/BU 40.0 98 0.0021 25.1 5.7 24 93-116 100-123 (125)
394 COG5108 RPO41 Mitochondrial DN 39.5 2.4E+02 0.0051 30.0 9.4 75 167-246 33-115 (1117)
395 PF07575 Nucleopor_Nup85: Nup8 39.3 2.5E+02 0.0055 29.9 10.4 33 316-348 507-539 (566)
396 KOG4567 GTPase-activating prot 38.3 2.1E+02 0.0045 27.3 8.1 72 147-223 263-344 (370)
397 PF11846 DUF3366: Domain of un 38.1 1.1E+02 0.0024 27.0 6.5 31 159-189 141-171 (193)
398 KOG2063 Vacuolar assembly/sort 37.7 6.4E+02 0.014 28.4 24.4 56 31-88 313-373 (877)
399 KOG2034 Vacuolar sorting prote 37.4 6.2E+02 0.013 28.2 29.4 78 28-115 361-438 (911)
400 PRK10564 maltose regulon perip 37.0 79 0.0017 29.9 5.4 31 94-124 259-289 (303)
401 PRK10564 maltose regulon perip 36.9 63 0.0014 30.6 4.7 30 377-406 260-289 (303)
402 PF09454 Vps23_core: Vps23 cor 36.6 63 0.0014 22.6 3.6 30 128-157 9-38 (65)
403 KOG1464 COP9 signalosome, subu 36.3 3.6E+02 0.0078 25.1 16.7 153 37-189 39-218 (440)
404 KOG1586 Protein required for f 35.6 3.5E+02 0.0076 24.8 19.4 91 385-477 165-265 (288)
405 COG4003 Uncharacterized protei 35.5 1.5E+02 0.0032 21.7 5.2 25 133-157 37-61 (98)
406 KOG0686 COP9 signalosome, subu 35.2 4.7E+02 0.01 26.1 14.2 63 270-332 151-215 (466)
407 COG0735 Fur Fe2+/Zn2+ uptake r 35.1 2E+02 0.0044 23.9 7.2 26 275-300 26-51 (145)
408 KOG0686 COP9 signalosome, subu 35.0 4.7E+02 0.01 26.1 14.4 63 235-297 151-215 (466)
409 COG0735 Fur Fe2+/Zn2+ uptake r 34.5 2.7E+02 0.0059 23.2 7.8 44 168-211 26-69 (145)
410 KOG2063 Vacuolar assembly/sort 34.5 7.2E+02 0.016 28.0 18.3 110 130-247 507-639 (877)
411 PF14689 SPOB_a: Sensor_kinase 34.4 72 0.0016 22.0 3.6 33 22-54 20-52 (62)
412 cd00280 TRFH Telomeric Repeat 34.3 2.9E+02 0.0064 24.1 7.8 20 348-367 120-139 (200)
413 PF11417 Inhibitor_G39P: Loade 33.8 1.2E+02 0.0027 21.6 4.7 38 23-60 27-64 (71)
414 KOG4507 Uncharacterized conser 33.7 1.4E+02 0.0031 31.0 6.9 88 315-403 618-705 (886)
415 KOG0545 Aryl-hydrocarbon recep 33.0 4E+02 0.0086 24.6 9.6 91 31-121 184-293 (329)
416 cd00280 TRFH Telomeric Repeat 32.9 3.4E+02 0.0073 23.8 7.9 20 313-332 120-139 (200)
417 KOG0991 Replication factor C, 32.8 3.9E+02 0.0085 24.5 12.9 39 407-446 237-275 (333)
418 PF04097 Nic96: Nup93/Nic96; 32.4 6.7E+02 0.015 27.1 19.6 219 127-368 112-356 (613)
419 PF09454 Vps23_core: Vps23 cor 32.1 1.5E+02 0.0032 20.8 4.8 51 89-140 5-55 (65)
420 COG1782 Predicted metal-depend 31.8 24 0.00053 35.5 1.3 42 548-590 419-460 (637)
421 COG0790 FOG: TPR repeat, SEL1 31.6 4.5E+02 0.0097 24.8 22.2 18 424-441 252-269 (292)
422 COG2178 Predicted RNA-binding 31.1 3.6E+02 0.0078 23.8 7.9 14 318-331 135-148 (204)
423 PF12862 Apc5: Anaphase-promot 30.8 2.3E+02 0.0051 21.3 6.7 21 134-154 48-68 (94)
424 KOG2297 Predicted translation 30.7 4.8E+02 0.01 24.9 15.5 66 250-324 271-341 (412)
425 PF11817 Foie-gras_1: Foie gra 30.4 2.4E+02 0.0053 26.1 7.7 25 29-53 14-38 (247)
426 PF12862 Apc5: Anaphase-promot 30.1 2.4E+02 0.0052 21.2 6.6 23 168-190 47-69 (94)
427 PF09670 Cas_Cas02710: CRISPR- 30.0 5.7E+02 0.012 25.5 12.2 54 279-333 141-198 (379)
428 cd08332 CARD_CASP2 Caspase act 29.9 2.3E+02 0.0051 21.3 6.1 57 46-107 24-80 (90)
429 TIGR03362 VI_chp_7 type VI sec 29.7 5.1E+02 0.011 24.9 11.6 47 27-75 101-147 (301)
430 PF10345 Cohesin_load: Cohesin 29.3 7.5E+02 0.016 26.7 34.2 21 417-437 585-605 (608)
431 PRK10941 hypothetical protein; 29.2 4.9E+02 0.011 24.5 10.7 57 168-225 187-243 (269)
432 KOG2908 26S proteasome regulat 29.1 5.5E+02 0.012 25.0 9.8 81 135-215 83-175 (380)
433 smart00386 HAT HAT (Half-A-TPR 28.8 1.1E+02 0.0023 16.8 4.1 25 250-275 3-27 (33)
434 PF05944 Phage_term_smal: Phag 28.8 2.5E+02 0.0055 23.0 6.4 36 20-57 45-80 (132)
435 KOG3824 Huntingtin interacting 28.4 3.6E+02 0.0078 25.7 8.0 69 16-86 104-175 (472)
436 PF10366 Vps39_1: Vacuolar sor 28.2 3E+02 0.0064 21.6 7.8 26 165-190 42-67 (108)
437 KOG0376 Serine-threonine phosp 28.0 1.2E+02 0.0025 30.8 5.2 102 32-137 11-115 (476)
438 PF04762 IKI3: IKI3 family; I 27.7 9.8E+02 0.021 27.5 14.3 196 239-463 699-922 (928)
439 PF11817 Foie-gras_1: Foie gra 27.6 3.1E+02 0.0068 25.3 7.9 56 379-434 183-243 (247)
440 COG5159 RPN6 26S proteasome re 27.6 5.3E+02 0.012 24.4 20.7 212 27-238 5-247 (421)
441 cd08326 CARD_CASP9 Caspase act 27.4 2.6E+02 0.0056 20.7 6.1 60 46-110 20-79 (84)
442 PRK09857 putative transposase; 27.3 5.3E+02 0.012 24.6 9.4 66 130-196 209-274 (292)
443 PF09868 DUF2095: Uncharacteri 27.3 2.6E+02 0.0057 22.0 5.8 40 97-137 66-105 (128)
444 PF08311 Mad3_BUB1_I: Mad3/BUB 26.9 3.4E+02 0.0074 21.9 9.8 42 110-151 81-123 (126)
445 PF11838 ERAP1_C: ERAP1-like C 26.7 5.8E+02 0.012 24.5 18.5 190 99-294 45-262 (324)
446 KOG0403 Neoplastic transformat 25.9 7.1E+02 0.015 25.3 17.6 75 377-456 512-586 (645)
447 PF02259 FAT: FAT domain; Int 25.7 6.2E+02 0.013 24.5 27.6 64 339-402 146-212 (352)
448 PF07064 RIC1: RIC1; InterPro 25.6 5.6E+02 0.012 23.9 15.6 27 94-120 84-110 (258)
449 PHA02537 M terminase endonucle 24.8 5.4E+02 0.012 23.5 9.3 37 19-57 79-115 (230)
450 COG5187 RPN7 26S proteasome re 24.6 6.1E+02 0.013 24.1 12.8 28 162-189 115-142 (412)
451 PRK10941 hypothetical protein; 24.5 6E+02 0.013 23.9 11.0 57 240-297 187-243 (269)
452 PF11768 DUF3312: Protein of u 24.3 8.4E+02 0.018 25.6 11.3 21 168-188 414-434 (545)
453 PF02184 HAT: HAT (Half-A-TPR) 24.0 1.2E+02 0.0025 17.8 2.6 24 424-449 2-25 (32)
454 COG2909 MalT ATP-dependent tra 23.8 1.1E+03 0.023 26.5 25.5 191 245-438 426-647 (894)
455 PF09670 Cas_Cas02710: CRISPR- 23.8 7.4E+02 0.016 24.7 12.3 54 313-367 140-197 (379)
456 PRK08691 DNA polymerase III su 23.8 9.6E+02 0.021 26.3 11.2 45 286-332 181-226 (709)
457 PF11123 DNA_Packaging_2: DNA 23.5 2.9E+02 0.0062 19.8 5.1 33 249-282 12-44 (82)
458 KOG1308 Hsp70-interacting prot 23.5 36 0.00078 32.6 0.8 89 74-164 127-219 (377)
459 PF10255 Paf67: RNA polymerase 23.1 7.8E+02 0.017 24.8 12.1 63 199-261 124-191 (404)
460 PRK13342 recombination factor 22.9 8E+02 0.017 24.8 19.1 42 272-313 230-274 (413)
461 PF10475 DUF2450: Protein of u 22.5 6.8E+02 0.015 23.8 10.1 111 168-294 104-222 (291)
462 KOG0376 Serine-threonine phosp 22.5 2.8E+02 0.0061 28.2 6.6 52 314-367 14-66 (476)
463 KOG0687 26S proteasome regulat 22.4 7.2E+02 0.016 24.1 14.8 39 163-201 105-147 (393)
464 PRK11639 zinc uptake transcrip 22.4 4.8E+02 0.01 22.4 7.5 59 119-178 18-76 (169)
465 PF15297 CKAP2_C: Cytoskeleton 21.9 7.1E+02 0.015 24.3 8.9 63 214-280 120-186 (353)
466 KOG0687 26S proteasome regulat 21.9 7.4E+02 0.016 24.0 15.0 96 340-437 105-209 (393)
467 KOG4642 Chaperone-dependent E3 21.8 6.4E+02 0.014 23.3 11.1 113 249-365 25-143 (284)
468 PF04910 Tcf25: Transcriptiona 21.8 7.9E+02 0.017 24.3 18.8 212 21-246 36-271 (360)
469 PF15297 CKAP2_C: Cytoskeleton 21.6 7.7E+02 0.017 24.1 9.9 64 390-455 119-186 (353)
470 PF02607 B12-binding_2: B12 bi 21.4 2.3E+02 0.0049 20.3 4.6 33 421-453 13-45 (79)
471 KOG0989 Replication factor C, 21.4 7.5E+02 0.016 23.9 9.9 93 327-444 198-290 (346)
472 PF00244 14-3-3: 14-3-3 protei 21.1 6.5E+02 0.014 23.1 8.7 58 98-155 7-65 (236)
473 KOG4642 Chaperone-dependent E3 20.9 6.7E+02 0.015 23.2 11.1 79 141-223 24-104 (284)
474 KOG1308 Hsp70-interacting prot 20.8 79 0.0017 30.4 2.4 50 140-190 127-176 (377)
475 smart00804 TAP_C C-terminal do 20.6 1.5E+02 0.0033 20.5 3.2 45 523-572 18-62 (63)
476 cd07153 Fur_like Ferric uptake 20.2 3.1E+02 0.0067 21.5 5.6 28 418-445 9-36 (116)
477 KOG2659 LisH motif-containing 20.2 6.7E+02 0.014 22.8 9.2 100 335-434 22-128 (228)
478 PRK11639 zinc uptake transcrip 20.0 4.8E+02 0.01 22.4 7.0 60 331-391 18-77 (169)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-87 Score=721.41 Aligned_cols=572 Identities=77% Similarity=1.237 Sum_probs=554.0
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHH
Q 007613 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (596)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (596)
+.+...++..|+.|++.|++++|+++|++|.+.|.++++..++..++..|.+.|.+++|+++|+.|+.||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34688899999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (596)
|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007613 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (596)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (596)
+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987555889999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007613 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (596)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (596)
+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|+.|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (596)
|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhhHHHHHHHHHHHHHcCCCCc
Q 007613 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 501 (596)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 501 (596)
.|++++|.++|++|.+.|+.||..+|++||++|.+++++|+.+.++...|+.+.+.+.+.|+++|+.+|++|++.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999888899999999999999988888888999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHhHHHhhCCCccccccccccccccccccchhHHHHHHHHHHhCCCCCccccCCCCeeecc
Q 007613 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDA 581 (596)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~~~~ 581 (596)
..|+..+++|+....+...+..|.+.+++.|...+|..+.++|+++|...++|+.+|++|.+.|++|+..+.....++|+
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEc
Confidence 99999999999888888888899999999999998888889999999777799999999999999999998888899999
Q ss_pred cCCccccccccc
Q 007613 582 RKLEIHTAKGRN 593 (596)
Q Consensus 582 ~~~~~~~~~~~~ 593 (596)
|.|+++.|||+.
T Consensus 927 ~~~~~~aa~~~l 938 (1060)
T PLN03218 927 EELPVFAAEVYL 938 (1060)
T ss_pred ccCcchhHHHHH
Confidence 999999999873
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-70 Score=598.25 Aligned_cols=519 Identities=19% Similarity=0.293 Sum_probs=444.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHhhh
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKSQ 74 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~----------------------------------~~~l~~~~~~~ 74 (596)
......+++.|++++|+.+|++|.+.|..|....+ ...++..+.+.
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence 34455667999999999999999998754332221 12334455677
Q ss_pred HHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-----------------------
Q 007613 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT----------------------- 131 (596)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----------------------- 131 (596)
|+++.|+++|+.|++||.++||++|.+|++.|++++|+++|++|...|+.||..||+
T Consensus 135 g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999989888877764
Q ss_pred ------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007613 132 ------------TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (596)
Q Consensus 132 ------------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (596)
.|+.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..|
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 55566667777777777777776 56777788888888888888888888888888888888888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007613 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (596)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (596)
|+.++.+|++.|+.+.|.+++..|.+. |+.||..+|++++.+|++.|++++|.++|+.|.. ||..+||++|.+|
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 888888888888888888888888765 7788888888889999999999999999988863 5668899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (596)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (596)
++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++++.+.+.|+.|+..+||+|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (596)
++|++|. .+|..+||++|.+|+++|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.+++..+.+.|
T Consensus 445 ~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 9999997 58899999999999999999999999999986 599999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhhHHH------------HHHHHHHHHHcCCCCcHHHHHH
Q 007613 440 VIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSK 507 (596)
Q Consensus 440 ~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~m~~~g~~p~~~~~~~ 507 (596)
+.++..++|+||++|++ +|+++++...|+.+ ..+..+|+++ |+.+|++|.+.|+.||.+||..
T Consensus 520 ~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999654 67777777778777 6677888874 9999999999999999999998
Q ss_pred HH-hhcCCC---CchhHHHhHHHhhCCCccccccccccccccccccch--hHHHHHHHHHHhCCCCCccccCCCCeee
Q 007613 508 VL-GCLQLP---YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVSFKEIPVVV 579 (596)
Q Consensus 508 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~--~~a~~~~~~~~~~g~~p~~~~~~~~~~~ 579 (596)
++ +|++.+ ++.++++.|.+.+|+.|+..+|+ ++|+.+++.+ ++|.+++++| |+.||+.+|
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~~~~~~m---------~~~pd~~~~ 660 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAYNFINKM---------PITPDPAVW 660 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHHHHHHHC---------CCCCCHHHH
Confidence 87 787755 34567888888899999999987 7999988754 5676666665 355566665
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-65 Score=561.74 Aligned_cols=507 Identities=20% Similarity=0.297 Sum_probs=403.7
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 007613 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (596)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~m~~~~~~~~~~~~----------------------------------~~~l~ 68 (596)
+++.+||.++ +.|++++|+++|++|.+.|..|+...+ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 3556677666 899999999999999988875543322 23455
Q ss_pred HHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007613 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (596)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (596)
..+.+.|++++|.++|+.|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 007613 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (596)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (596)
++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||.++|+.+|.+|++.|++++|.++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999888888888888886 467788888888888888888888888888764
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------
Q 007613 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------- 298 (596)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------- 298 (596)
++.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|++||++|++.|++++|.++|++|.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 6777777777777777777777777777777777777777777777777776666666666666655432
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 299 --------------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (596)
Q Consensus 299 --------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (596)
++.||..||++++.+|++.|.++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 356677777777777777777777777777777777777777778888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H
Q 007613 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (596)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~ 437 (596)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 8888877 589999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred cCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhcCCCCc
Q 007613 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (596)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~ 517 (596)
.|+.|+..+|++++++|+| +|.+.+ |.+++++| +++||..+|..+++.+..+.+
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 7999999999999999765 444433 44555555 578888888888865555555
Q ss_pred hhHHHhHH-HhhCCCccccc-cccccccccccccchhHHHHHHHHHHhCCCCCccc
Q 007613 518 ADIRERLV-ENLGVSADALK-RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (596)
Q Consensus 518 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~ 571 (596)
.+..+... +...+.|+... |..+..+....|++ ++|.++.++|++.|+.++..
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~-~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKW-DEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh-HHHHHHHHHHHHcCCCCCCC
Confidence 55544433 33456776432 32222222333553 56778888888888887643
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.2e-63 Score=529.89 Aligned_cols=418 Identities=23% Similarity=0.416 Sum_probs=394.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC----CCChHhHHHHHHHHHhc
Q 007613 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASS 105 (596)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 105 (596)
..++.+.+.|.+++|..+|+.|.. ++...+..++..|.+.|++++|.++|+.|. .||..+|+++|.+|++.
T Consensus 411 ~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 411 KFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 344556689999999999999975 345566678888889999999999999874 68999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 007613 186 GIMRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 186 ~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (596)
++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+. ++.|+..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 99986 678999999999999999999999999999999975 78999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007613 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (596)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (596)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 007613 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-- 421 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 421 (596)
.||.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y 803 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --c-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 422 --K-------------------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 422 --~-------------------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
. +..+.|..+|++|++.|+.||..+|+.+|.++
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 1 12467999999999999999999999999654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-61 Score=515.66 Aligned_cols=454 Identities=20% Similarity=0.311 Sum_probs=402.0
Q ss_pred hhHHHHHHHHHHhhCC-----CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007613 73 SQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (596)
Q Consensus 73 ~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 147 (596)
+.|++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 3344444444444331 47889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 007613 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (596)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 227 (596)
++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus 179 ~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~- 253 (697)
T PLN03081 179 RLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT- 253 (697)
T ss_pred HHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh-
Confidence 9999997 68999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307 (596)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 307 (596)
++.||..++++|+++|++.|++++|.++|+.|.. +|..+||++|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 254 -g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 254 -GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred -CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7899999999999999999999999999999964 46799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007613 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (596)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (596)
++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+||.+|+++
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999997 58999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhhHHHHHHhhh
Q 007613 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNE 466 (596)
Q Consensus 388 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~~~~a~~~~~ 466 (596)
|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++ +|.+++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~e 480 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLLDE 480 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCHHH
Confidence 99999999999999999999999999999999999999999999999985 6999999999999999765 444443
Q ss_pred hhhhccCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhcCCCCchhHHHh-HHHhhCCCcc-ccccccccccc
Q 007613 467 HVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER-LVENLGVSAD-ALKRSNLCSLI 544 (596)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i 544 (596)
|.++|++ .++.|+..+|..++..+....+.+..+. ..+..++.|+ ..+|. .++
T Consensus 481 -------------------A~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~---~L~ 535 (697)
T PLN03081 481 -------------------AYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV---VLL 535 (697)
T ss_pred -------------------HHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH---HHH
Confidence 3344444 4789999999998854433333333333 3344677776 45555 455
Q ss_pred cccccc--hhHHHHHHHHHHhCCCCCc
Q 007613 545 DGFGEY--DPRAFSLLEEAASFGIVPC 569 (596)
Q Consensus 545 ~~~g~~--~~~a~~~~~~~~~~g~~p~ 569 (596)
..+++. .++|.+++++|.+.|+...
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 555432 3689999999999998643
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-59 Score=502.67 Aligned_cols=453 Identities=18% Similarity=0.272 Sum_probs=407.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
+.+.++++.|.+++..|.+.|..| +...+..++..+.+.|++++|.++|+.|+.||.++||+++.+|++.|++++|+++
T Consensus 133 ~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 133 CIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHH
Confidence 336778888888888888888654 5566667778888899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007613 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194 (596)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 194 (596)
|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+||+||++|+++|++++|.++|++|. +
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~ 287 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----E 287 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007613 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (596)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (596)
+|.++||++|.+|++.|++++|.++|++|... ++.||..||++++.+|++.|++++|.+++..|.+.|+.++..+|++
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 68999999999999999999999999999875 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007613 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (596)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (596)
||++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999964 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 355 WQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (596)
Q Consensus 355 ~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (596)
+++|.++|+.|.+ .|+.|+..+|++|+.+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999986 699999999999999999999999999999876 478999999999999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhhcc--------------------CC---CccchhhhHHHHH
Q 007613 434 QAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFN--------------------SG---RPQIENKWTSLAL 487 (596)
Q Consensus 434 ~~~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~--------------------~~---~~~~~~~~~~~a~ 487 (596)
++.+ +.|+ ..+|+.|+++|++ ++++|.++.+.+..-. .+ .|... .-.....
T Consensus 519 ~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~-~i~~~l~ 595 (697)
T PLN03081 519 KLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR-EIYQKLD 595 (697)
T ss_pred HHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHH-HHHHHHH
Confidence 9975 5564 5689999999887 6777776655443211 00 11111 1122456
Q ss_pred HHHHHHHHcCCCCcHHH
Q 007613 488 MVYREAIVAGTIPTVEV 504 (596)
Q Consensus 488 ~~~~~m~~~g~~p~~~~ 504 (596)
.+..+|.+.|..||...
T Consensus 596 ~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 596 ELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHHcCCCCCcch
Confidence 78889999999998654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1.5e-26 Score=259.74 Aligned_cols=515 Identities=16% Similarity=0.080 Sum_probs=359.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCC
Q 007613 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (596)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 107 (596)
....+.+.|++++|++.++++...+ |.+......+...+...|++++|.++|+++. +.+...+..+...+...|+
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 3344446667777777776666554 4444445555566666677777777776543 3345566666666777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
+++|...++.+.+.. +........++..+.+.|++++|.++++.+.... +.+..+|..+...|...|++++|.+.|++
T Consensus 413 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 413 PSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred hHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777777777766553 2233455556677777777777877777776543 45677888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 007613 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (596)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (596)
+.+.. +.+...+..+...+...|++++|.+.++++... .+.+..++..+...+.+.|+.++|...++++.+.+ +.
T Consensus 491 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 491 ALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 87653 344566777788888888888888888888753 23456677788888888888888888888887765 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (596)
+...+..++..|.+.|++++|..+++.+.+... .+...|..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 667788888889999999999999998887543 367788888889999999999999999888765 456777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (596)
+|.+.|++++|..+|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999888754 4567888899999999999999999999988763 4567778888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhhH------------HHHHHHHHHH
Q 007613 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT------------SLALMVYREA 493 (596)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~m 493 (596)
|...++++.+.+ |+..++..+..++.+ .+++|....+..... .|.+...+. ..|...|+++
T Consensus 722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999988754 555566666666554 455554443322211 222222222 2488889988
Q ss_pred HHcCCCCcHHHHHHHHh--hcCCCCchhHHHhHHHhhCCCccccccc-cccccccccccchhHHHHHHHHHHhCCCCCc
Q 007613 494 IVAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSADALKRS-NLCSLIDGFGEYDPRAFSLLEEAASFGIVPC 569 (596)
Q Consensus 494 ~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~ 569 (596)
++.. |+.......++ +...+. .+....+.+...+.|+..... .++.+....|+ .++|...++++.+. .|+
T Consensus 797 ~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~--~~~ 869 (899)
T TIGR02917 797 VKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNI--APE 869 (899)
T ss_pred HHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh--CCC
Confidence 8764 55543333222 233333 445555666666777654321 11122222243 46899999999884 454
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.2e-26 Score=257.12 Aligned_cols=513 Identities=13% Similarity=0.064 Sum_probs=401.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhc
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 105 (596)
......+.+.|++++|.+.|+++.+.+ |.+...+..+...+...|++++|.+.|+.+. +.+......++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 334445568999999999999999876 6666667777777888899999999998754 23445667778889999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
|++++|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 445 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998753 6678899999999999999999999999998764 556778888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007613 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (596)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (596)
+++...+ +.+..++..+...+.+.|+.++|...+.++... .+.+...+..+...|.+.|++++|..+++.+.+..
T Consensus 523 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 523 EKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 9998764 456788889999999999999999999998764 23456677888999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007613 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (596)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (596)
+.+..+|..+...|...|++++|...|+++.+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 667889999999999999999999999999876543 66788889999999999999999999998875 5568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (596)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (596)
...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.|+++... .|+..++..+..++.+.|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 999999999999999999998765 467788888999999999999999999999874 56667888889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhhHH-----------HHHHHHHH
Q 007613 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS-----------LALMVYRE 492 (596)
Q Consensus 426 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----------~a~~~~~~ 492 (596)
++|.+.++++.+.. ..+...+..+..+|.+ .+++|....+..... .|.+...+.. .|+..+++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK---APDNAVVLNNLAWLYLELKDPRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999998753 3456667777777654 556665554433222 2333333322 37777777
Q ss_pred HHHcCCCCcHHHHHHHHh--hcCCCCchhHHHhHHHhhCCCcc-ccccccccccccccccchhHHHHHHHHHH
Q 007613 493 AIVAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (596)
Q Consensus 493 m~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~g~~~~~a~~~~~~~~ 562 (596)
.++. .|+...+...++ +...+.-.+....+.+.+...|. +..+.+++......|+ .++|..++++|+
T Consensus 829 ~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR-KAEARKELDKLL 898 (899)
T ss_pred HHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 7654 566554443333 23344445555556666666664 4444433333333354 467888888875
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4e-21 Score=193.56 Aligned_cols=301 Identities=13% Similarity=0.109 Sum_probs=172.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCC
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (596)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4456677888888888887764 34556777777777788888888888877776431111 2456677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHcCChhHHH
Q 007613 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (596)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~ 254 (596)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.... +..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888877777777642 3456677777777777777777777777776531 11111 112334445555666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007613 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (596)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (596)
..|+++.+.. +.+...+..+...|.+.|++++|.+.|+++.+.+......++..++.+|...|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666665543 333445555556666666666666666665544322112344455555555555555555555554442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCH
Q 007613 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNT 409 (596)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 409 (596)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.++.|++
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 23333445555555555555555555554443 3455555544444432 33455555555555544444443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3.1e-20 Score=187.12 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=253.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhcc
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 210 (596)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344568899999999999999874 45667899999999999999999999999987642222 24678889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 007613 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (596)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 286 (596)
|++++|..+|+++... .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999863 235677899999999999999999999999988653332 224567788889999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
+|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999876533 4667888889999999999999999999987533335678899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCC
Q 007613 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (596)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~g~~p~ 443 (596)
+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 76 466667788999999999999999999998874 7999999988887664 5689999999999998777666
Q ss_pred HH
Q 007613 444 LV 445 (596)
Q Consensus 444 ~~ 445 (596)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 64
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=2.3e-17 Score=186.45 Aligned_cols=285 Identities=16% Similarity=0.135 Sum_probs=186.6
Q ss_pred cccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHhhhHHHHHHHHHH
Q 007613 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFF 84 (596)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~ 84 (596)
.|++..........+.+.|+.++|.+.+++..+.. |.+..+. ....+.+...|++++|.+.|
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 45555556666666678899999999998888877 4443332 12233455667888888888
Q ss_pred hhCCC---CChH-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--
Q 007613 85 KLVPN---PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-- 158 (596)
Q Consensus 85 ~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 158 (596)
++..+ ++.. ............|+.++|+..++++.+.. +.+...+..+...+...|+.++|++.++++.....
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 87642 2221 11111122234588888888888888764 44667777888888888888888888887754310
Q ss_pred ----------------C--------------CCHhhH---------------------HHHHHHHHhcCCHHHHHHHHHH
Q 007613 159 ----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 159 ----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~ 187 (596)
. |+.... ......+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 000000 0113345667888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH------------HHHHHHHHHcCChhHHHH
Q 007613 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRARE 255 (596)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~a~~ 255 (596)
..+.. +.+...+..+..++.+.|++++|...|++....... .++...+ ......+.+.|++++|+.
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 88763 336777888888888889999998888887754211 1111111 122345677888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (596)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (596)
.|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+..
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~ 427 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 888888875 556677788888888888999998888888775432 3334433333
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.4e-18 Score=196.33 Aligned_cols=387 Identities=12% Similarity=0.058 Sum_probs=297.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCh---HhHHH-----------
Q 007613 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL---STFNM----------- 97 (596)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~---~~~~~----------- 97 (596)
.+...|++++|+..|++..+.. |.+...+..+..++.+.|++++|+..|++.. .|+. ..|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3457899999999999999887 6777778888888888899999999998754 2221 12222
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 98 -li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2345678899999999999998864 4567778888999999999999999999988764 445666777777774 46
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHc
Q 007613 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANA 247 (596)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~ 247 (596)
+.++|+..++.+...... .....+..+...+...|++++|.+.|++..+. .| +...+..+...|.+.
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc
Confidence 789998888766432100 01223455667788899999999999998864 34 455677788899999
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcC
Q 007613 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAG 318 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g 318 (596)
|++++|...++++.+.. +.++..+..+...+.+.++.++|+..++.+......++.. .+......+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999988765 4566666666777788999999999998875443322221 1234456788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007613 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (596)
+.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999998872 35566777889999999999999999999998764 4568889999999999999999999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 399 DMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 399 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
...+. .|+ ..++..+..++...|++++|.++++++++.
T Consensus 662 ~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 662 KLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88763 444 555677788888999999999999999874
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=9e-20 Score=175.05 Aligned_cols=392 Identities=14% Similarity=0.107 Sum_probs=234.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCChHhHHHHHHHHHh
Q 007613 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCAS 104 (596)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~ 104 (596)
.+.....+.+.|++.+|.+-....-.++ |.+.....++...+.+..+++.....-.. ..+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 4445566778999999998877776665 22222222222223222223222111111 112234566667777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFG 183 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~ 183 (596)
.|+++.|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+...|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 777777777777777653 334566777777777777777777777766654 344332 2334444445667777777
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007613 184 AYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIH 261 (596)
Q Consensus 184 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (596)
.|.+..+. .|. .+.|+.|...+-..|+...|++.|++... ++|+ ...|-.|...|...+.+++|...+.+..
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 66666654 232 45666666666667777777777766653 3443 3356666666666666677666666665
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007613 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (596)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (596)
... +....++..+...|...|..+-|+..+++..+..+. =...|+.+..++-..|++.+|.+.+....... +--...
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 543 334555666666666667777777777666654322 13456666666666677777777766666553 223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVAC 419 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 419 (596)
.+.|...|...|.+++|..+|....+. .|. ....|.|...|-+.|++++|+..+++..+ +.|+ ...|+.+...|
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHH
Confidence 666666666677777777666666553 233 34566666666666777777766666665 5665 34566666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007613 420 ERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~ 437 (596)
-..|++..|.+.+.+.+.
T Consensus 433 ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 666666666666666665
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=8.4e-18 Score=177.73 Aligned_cols=330 Identities=11% Similarity=0.041 Sum_probs=193.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 007613 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (596)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (596)
-.++..+.+.|+++.|+.+++...... +-+...+..++.+....|++++|.+.|+++.... +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 334455566666666666666666543 2233344444455556666667776666666553 33455566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHH
Q 007613 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAR 254 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~ 254 (596)
|++++|...|++..... +.+...+..+...+...|++++|...+..+... .|+ ...+..+ ..+...|++++|.
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHcCCHHHHH
Confidence 77777776666666542 223455566666666667777666666655432 122 1222222 2355666667776
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 007613 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEA 330 (596)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~ 330 (596)
..++.+.+....++...+..+...+.+.|++++|+..+++..+.... +...+..+...+...|++++ |...++.+
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 66666655432233334444455666667777777777666655432 45555666666666666664 56666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007613 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (596)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 410 (596)
.+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|+..|+++... .|+..
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 6654 3455566666666777777777777777666543 233445556666666777777777777666653 34433
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 411 T-YSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 411 t-~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
. +..+..++...|+.++|...|++..+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 223345566677777777777666653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=3.4e-19 Score=171.09 Aligned_cols=387 Identities=15% Similarity=0.158 Sum_probs=318.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (596)
+..+++...+--....+.. |.....+..+..++...|++++|+.+++.+. +..+..|..+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4445555554444444444 5666677778889999999999999998764 3466789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 114 VLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 114 ~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
.|....+. .|+... .+.+...+-..|++++|..-|.+.++. .|. ...|+.|.-.+-..|+...|++-|++....
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 99988875 565543 344555566689999999999888875 343 567999999999999999999999999876
Q ss_pred CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH
Q 007613 192 NVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (596)
Q Consensus 192 g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (596)
.|+ ...|-.|...|...+.+++|...+.+.... .|+ ..++..+...|-..|.++.|+..+++..+.. +.-+
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~ 320 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFP 320 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCch
Confidence 455 568889999999999999999999988753 555 5677778888999999999999999998875 4457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
..|+.|..++-..|+..+|.+.+.+.+..... .....+.|...|...|.+++|..+|....+.. +--....+.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 89999999999999999999999998886543 45678889999999999999999999888764 33356788999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 427 (596)
-+.|++++|...+++..+. +|+ ..+|+.+...|-..|+.+.|++.+.+... +.|. ...++.|.+.+-.+|++.+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999998874 576 46899999999999999999999999887 5666 4678899999999999999
Q ss_pred HHHHHHHHHHcCCCCCH
Q 007613 428 GLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 428 a~~~~~~~~~~g~~p~~ 444 (596)
|++-++..++ ++||.
T Consensus 475 AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHHc--cCCCC
Confidence 9999999998 55654
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.4e-17 Score=176.10 Aligned_cols=322 Identities=11% Similarity=0.016 Sum_probs=172.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGA 111 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 111 (596)
+.+.|++++|+.+++...... |.+......++......|++++|...|+++. +.+...+..+...+.+.|++++|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 335666666666666666554 4444444444444445566666666665542 23444555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
...++.+.+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 66666665542 3344555556666666666666666666554432 1222222222 2355566666666666665544
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHhcCCCC
Q 007613 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----AREVYKMIHKYNIKG 267 (596)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~ 267 (596)
...++...+..+..++...|++++|...+++..... +.+...+..+...+...|++++ |...|++..+.. +.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 222223333344455556666666666666655421 2234445555566666666553 566666665543 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (596)
+..++..+...+.+.|++++|+..+++..+.... +...+..+..++.+.|++++|...++.+...+ +.+...+..+..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~ 360 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAA 360 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 4555666666666666666666666665554332 34445555556666666666666666655543 112222333444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007613 348 ACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~ 367 (596)
++...|+.++|...|++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55666666666666666554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=6.5e-17 Score=171.66 Aligned_cols=394 Identities=12% Similarity=0.035 Sum_probs=274.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (596)
-+.+.+.|++++|+..|++.++.. |. ..++..+...+...|++++|+..+.+.. +.+...|..+..++...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 345568999999999999998876 43 4566677778888899999999998754 44667888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-------------------------C--CCCCC
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-------------------------A--GIEPN 161 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------------------~--g~~~~ 161 (596)
++|+.-|......+ ..+......++.-+........+...++.-.. . ...+.
T Consensus 211 ~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998887665443 11211111111111111001111111110000 0 00000
Q ss_pred -HhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-H
Q 007613 162 -VHTYGALIDG---CAKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H 234 (596)
Q Consensus 162 -~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~ 234 (596)
...+..+... ....+++++|.+.|++....+ ..| +...|+.+...+...|++++|...+++.... .|+ .
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~ 365 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVT 365 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcH
Confidence 0001111100 012367889999999888764 223 3456777788888899999999999988753 444 4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (596)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (596)
..|..+...+...|++++|...|+.+.+.+ +.+..+|..+...+...|++++|+..|++..+.... +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 577778888889999999999999888775 566788889999999999999999999998887543 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCC
Q 007613 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGD 388 (596)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g 388 (596)
.+.|++++|+..++...+.. +.+...++.+...+...|++++|...|++..+.....+. ..++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 89999999999999888764 556778888999999999999999999988765321111 11222223344568
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 389 QLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
++++|.+++++.... .|+ ...+..+...+.+.|++++|.+.|++..+.
T Consensus 523 ~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999988764 344 456888888999999999999999988763
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.5e-17 Score=176.01 Aligned_cols=405 Identities=10% Similarity=0.004 Sum_probs=306.5
Q ss_pred hhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHHHH
Q 007613 26 SEQLHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSV 101 (596)
Q Consensus 26 ~~~~~~~~~l~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~ 101 (596)
+..+.-|..+. ..|+.++|++++.+..... |.....+..+...+...|++++|..+|++. .+.+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455565554 8999999999999998744 556666777888888999999999999984 35567778888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (596)
+...|++++|+..++...+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999998873 55666 8889999999999999999999999874 44666777888889999999999
Q ss_pred HHHHHHHHhCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHhhCCCCCCCCHH-HH----HHHHH
Q 007613 182 FGAYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMK 242 (596)
Q Consensus 182 ~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~----~~ll~ 242 (596)
+..++.... .|+. .....++.... ..+++ ++|++.++.+.... +..|+.. .+ ...+.
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHH
Confidence 999987664 2221 11222233222 22334 77888888887531 2233321 11 11133
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcC
Q 007613 243 ACANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAG 318 (596)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g 318 (596)
.+...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++....... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999887632 22 233335778999999999999999987654321 1345666777889999
Q ss_pred CHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 319 KVEAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (596)
++++|...++.+..... .|+ ...+..+...+...|++++|.++++++.... +.+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999987631 122 2345667788999999999999999998764 55678899999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007613 385 CDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (596)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (596)
...|++++|++.+++... ..|+ ...+......+...|++++|..+++++++ ..|+..
T Consensus 404 ~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~ 461 (765)
T PRK10049 404 QARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDP 461 (765)
T ss_pred HhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCH
Confidence 999999999999999987 4566 45566777788999999999999999998 445544
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=4.8e-16 Score=165.01 Aligned_cols=347 Identities=12% Similarity=0.005 Sum_probs=215.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 007613 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (596)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (596)
......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34455566667777777777776653 4566666677777777777777777777766653 33455666677777777
Q ss_pred CCHHHHHHHHHHHHhCCC-----------------------------CCCHHHHHHH-----------------------
Q 007613 176 GQVAKAFGAYGIMRSKNV-----------------------------KPDRVVFNAL----------------------- 203 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~g~-----------------------------~p~~~~~~~l----------------------- 203 (596)
|++++|+..|......+- +++...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 777777655543322110 0000000000
Q ss_pred -------HHH------HhccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH
Q 007613 204 -------ITA------CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (596)
Q Consensus 204 -------i~~------~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (596)
+.. ....+++++|.+.|+...... ...| +...+..+...+...|++++|+..|++..+.. +...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 011245677777777776532 1223 34456666677777788888888888777664 4445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
..|..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 67777777777888888888888877766433 56677777777778888888888888777764 44566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HH-------HHHHHHHHHh
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-IT-------YSILLVACER 421 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t-------~~~ll~a~~~ 421 (596)
.+.|++++|...|++..+.. +.+...|+.+...+...|++++|++.|++.... .|+. .+ +...+..+..
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHH
Confidence 78888888888888776542 334667777777788888888888888876653 2321 11 1111122333
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 007613 422 KDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMC 454 (596)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~ 454 (596)
.|++++|.+++++..+. .|+.. .+..+..++
T Consensus 521 ~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 521 KQDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 57788888888777763 34433 344444443
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=5.8e-16 Score=142.89 Aligned_cols=421 Identities=16% Similarity=0.202 Sum_probs=299.4
Q ss_pred CCCCCCCCCCCCcccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----------------
Q 007613 9 LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---------------- 72 (596)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~---------------- 72 (596)
+++|.-..+.-..|..+. +-...-.+|.+|.+.++.-+++.|...|. +-...+...++++..
T Consensus 100 P~l~~F~P~~l~~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv 177 (625)
T KOG4422|consen 100 PQLPVFRPRHLADPLQVE-TENNLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFV 177 (625)
T ss_pred ccccccCchhcCCchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHh
Confidence 333333333223344444 44455567799999999999999999986 333333333333211
Q ss_pred -------------hhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 73 -------------SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (596)
Q Consensus 73 -------------~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (596)
+.|++ |. ++-...+.+..++.++|.++|+--..+.|.+++++......+.+..+||.+|.+-+-
T Consensus 178 ~~~~~~E~S~~sWK~G~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~ 254 (625)
T KOG4422|consen 178 GMRNFGEDSTSSWKSGAV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY 254 (625)
T ss_pred hccccccccccccccccH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence 11222 22 444455667789999999999999999999999999887779999999999977543
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 007613 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (596)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (596)
. ...++..+|.+..+.||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|.-+++.++..+
T Consensus 255 ~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 255 S----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred h----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 3 337899999999999999999999999999998765 46778899999999999999999999998887644
Q ss_pred -HHHHHHHHhhC--CCCCC---C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHh
Q 007613 216 -AFDVLAEMNAE--VHPVD---P-DHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQ 281 (596)
Q Consensus 216 -a~~~~~~~~~~--~~~~~---~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~ 281 (596)
+..++.++... +..+. | |...|...+..|.+..+.+.|.++........ +.++ ..-|..+....|+
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 44444444321 11222 2 46677888999999999999999887665431 1222 2336677888899
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C------
Q 007613 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-N------ 354 (596)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~------ 354 (596)
....+.-...|+.|.-.-.-|+..+...++++..-.|.++-..+++..++..|...+.....-++..+++.. .
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r 490 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPER 490 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHH
Confidence 999999999999999888889999999999999999999999999999888775555554444444455443 1
Q ss_pred --HH-----HHHHHHH-------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC----CCCHHHHHHHH
Q 007613 355 --WQ-----KALELYE-------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILL 416 (596)
Q Consensus 355 --~~-----~A~~~~~-------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll 416 (596)
+. -|..+++ ++.+. .......+...-.+.+.|+.++|.++|....+++- .|......-++
T Consensus 491 ~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 491 EQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 00 1111111 12222 33455667777778888888899888888765542 23444444666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC
Q 007613 417 VACERKDDVEVGLMLLSQAKEDGV 440 (596)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~~g~ 440 (596)
.+..+..+...|..+++.|...+.
T Consensus 569 d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCc
Confidence 677777788888888887766543
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=5.2e-15 Score=156.96 Aligned_cols=411 Identities=13% Similarity=0.090 Sum_probs=274.7
Q ss_pred cccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhH-HHH
Q 007613 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF-NML 98 (596)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l 98 (596)
.|..........-...++|++++|++.|++..+.. |.+. .++ -++.++...|+.++|+..+++...|+...+ ..+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34444444444444459999999999999999987 4442 223 455556667899999999999876644433 333
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 99 --MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 99 --i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
...+...|++++|+++++.+.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 457788899999999999999875 456777888899999999999999999999876 566556655544554566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH------HHHHHHH-----H
Q 007613 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC-----A 245 (596)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------~~ll~~~-----~ 245 (596)
+..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.. -+.+....+ ...++.- .
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 7767999999999884 34567778888899999988888877655321 112211111 1111100 0
Q ss_pred HcCC---hhHHHHHHHHHHhcC--CCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 246 NAGQ---VDRAREVYKMIHKYN--IKGTPEV----YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (596)
Q Consensus 246 ~~g~---~~~a~~~~~~~~~~~--~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (596)
...+ .+.|+.-++.+...- .++.... ..-.+-++...|++.++++.|+.+...+......+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1112 344555555554421 1222111 223455667778888888888888877754345567778888888
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCH-HHH
Q 007613 317 AGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTV-STM 377 (596)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~-~~~ 377 (596)
.+++++|..++..+.... .+++......|.-+|...+++++|..+++.+.+.. ..||- ...
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 888888888888876543 12344445677778888888888888888877621 11222 233
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007613 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (596)
..++..+...|+..+|.+.++++... -+-|......+...+...|.+.+|++.++.... +.|+.
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~ 483 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRS 483 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCcc
Confidence 44566677788888888888888664 344666777777788888888888888866655 34553
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=5.6e-15 Score=159.81 Aligned_cols=364 Identities=13% Similarity=0.077 Sum_probs=271.3
Q ss_pred HHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 007613 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (596)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (596)
..+....|+.++|++++.... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 444556788999999998754 3445568999999999999999999999988764 556777888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 007613 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (596)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (596)
+|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 9999999998873 44566 8889999999999999999999999873 3345666777888888999999999988665
Q ss_pred hCCCCCCCCH------HHHHHHHHHHH-----HcCCh---hHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcCC
Q 007613 225 AEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTGD 284 (596)
Q Consensus 225 ~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g~ 284 (596)
. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+. ..+ ...+..+...|+
T Consensus 178 ~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 178 L-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred C-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 3 2331 01122222222 12233 6788888888754 112221 111 111344567799
Q ss_pred HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 007613 285 WEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKALE 360 (596)
Q Consensus 285 ~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 360 (596)
+++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++|..
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999987642 432 22335778999999999999999987654211 13456667778899999999999
Q ss_pred HHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007613 361 LYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (596)
Q Consensus 361 ~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (596)
+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+...+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHH
Confidence 9999986421 123 234566778889999999999999999875 3445677888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 007613 427 VGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~ 444 (596)
+|++.+++.++ +.|+.
T Consensus 411 ~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 411 AAENELKKAEV--LEPRN 426 (765)
T ss_pred HHHHHHHHHHh--hCCCC
Confidence 99999999998 45664
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=5.6e-14 Score=152.31 Aligned_cols=505 Identities=11% Similarity=0.012 Sum_probs=243.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHHHHHHHHhcCChHHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
..|++++|+..|++..+.. |.+..++..+.+++...|+.++|+..+++.. .|+...|..++..+ +++.+|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 4477777777777777776 6666666777777777777777777776653 23222222222222 666666666
Q ss_pred HHHHHHcCCCCCHHHHHHH----------------------------------------HHHHHhcCChhHHHHHHHHHH
Q 007613 115 LRLVQEAGLKADCKLYTTL----------------------------------------ITTCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~l----------------------------------------i~~~~~~g~~~~a~~~~~~m~ 154 (596)
++++.+.. +-+..++..+ ...|.+.|++++|++++.++.
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 66666543 2223333333 344444444444444444444
Q ss_pred HCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC
Q 007613 155 NAGIEPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (596)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 233 (596)
+.+ +.+..-...|...|.. .++ +.+..+++. .++-+...+..+...|.+.|+.++|.+++.++.... .-.|+
T Consensus 210 k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~-~~~~~ 282 (987)
T PRK09782 210 QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF-TTDAQ 282 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc-cCCCc
Confidence 443 2223333334344443 133 344443322 112344555556666666666666666665553321 00111
Q ss_pred HHHH------------------------------HHHHHHHHHcCChhHHHHHHH-------------------------
Q 007613 234 HITI------------------------------GALMKACANAGQVDRAREVYK------------------------- 258 (596)
Q Consensus 234 ~~~~------------------------------~~ll~~~~~~g~~~~a~~~~~------------------------- 258 (596)
..++ ..++..+.+.++++.+.++..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 1111 111333333343333333221
Q ss_pred ----HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH---
Q 007613 259 ----MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G-VIPDEVFLSALIDFAGHAGK---VEAAFEI--- 326 (596)
Q Consensus 259 ----~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~li~~~~~~g~---~~~a~~~--- 326 (596)
.+.+. .+.+......+.-...+.|+.++|.++|+..... + ..++.....-++..|.+.+. ...+..+
T Consensus 363 ~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 363 RLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 00000 0112222222233344567888888888877652 1 22233444466666665544 2222222
Q ss_pred -------------------HHHHHHC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 327 -------------------LQEAKNQ-G-ISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (596)
Q Consensus 327 -------------------~~~~~~~-~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (596)
....... + .++ +...|..+..++.. ++.++|...+.+.... .|+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHH
Confidence 1111111 1 123 55666666666665 6667777766665543 3553333333444
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH--hhHHH
Q 007613 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEK 460 (596)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~ 460 (596)
+.+.|++++|...|+++... +|+...+..+..++.+.|+.++|...+++.++.. |+.. .+..+...+. .++++
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 45677777777777776542 4444555556666677777777777777776643 3332 2222211110 13444
Q ss_pred HHHhhhhhhhccCCCccchhhhHH------------HHHHHHHHHHHcCCCCcHHHHHHHHhh--cCCCCchhHHHhHHH
Q 007613 461 ARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVLGC--LQLPYNADIRERLVE 526 (596)
Q Consensus 461 a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~ 526 (596)
|....+.....+ |. ...|.. .|+..|++.++. .|+...+...++. ...+...+....+.+
T Consensus 595 Al~~~~~AL~l~---P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 595 ALNDLTRSLNIA---PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHhC---CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 443332222111 11 222222 255566655543 5666555444442 223444444445555
Q ss_pred hhCCCcccc-ccccccccccccccchhHHHHHHHHHHhCCCCCccc
Q 007613 527 NLGVSADAL-KRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (596)
Q Consensus 527 ~~~~~~~~~-~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~ 571 (596)
.+.+.|+.. ...++.......|+ .++|...++++.+ +.|+..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~--l~P~~a 711 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVID--DIDNQA 711 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCCCCc
Confidence 666666533 22222333333344 3567777777766 456544
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=4.8e-13 Score=145.10 Aligned_cols=144 Identities=8% Similarity=-0.033 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH--------HhhhHHHHHHHHHHhhCC-CCChHhHHHH-HHHHHhcCCh
Q 007613 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNV--------CKSQKAIKEAFRFFKLVP-NPTLSTFNML-MSVCASSKDS 108 (596)
Q Consensus 39 g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~ 108 (596)
+++++|..+++++.+.. |.+..+...+... +.+.++..++++ .+... .|+....... .+.|.+.|++
T Consensus 122 ~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 44444444444444443 3333333333333 334444444554 22222 2334444444 7889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
++|+.++..+.+.+ +.+..-...|..+|.. .++ +++..++.. .+..+...+..+...|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999987 5556667778888887 466 788888654 2246888999999999999999999999998
Q ss_pred HHhC
Q 007613 188 MRSK 191 (596)
Q Consensus 188 m~~~ 191 (596)
+...
T Consensus 273 ~~~~ 276 (987)
T PRK09782 273 NKPL 276 (987)
T ss_pred Cccc
Confidence 7643
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.4e-13 Score=140.00 Aligned_cols=427 Identities=12% Similarity=0.087 Sum_probs=259.9
Q ss_pred CcccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCh--Hh
Q 007613 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL--ST 94 (596)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~ 94 (596)
.++++...-.+..|.+.-.|++..+..+...+....... .-..-+..+++.+-..|++++|..+|-+.. .++. ..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 355666777777888888888888888888877665211 112224456677777888888888886543 2333 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
+--+.+.+.+.|+++.+...|+.+.+.. +.+..|...|...|...+ ..+.|..+..+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4456677888888888888888877653 445566666666666554 4455666655555432 345555655555
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCC-CCCCCH------HHHHH
Q 007613 171 GCAKAGQVAKAFGAYGIMR----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGA 239 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~------~~~~~ 239 (596)
.|-...-+.. +..|.... ..+-++.+...|.+...+...|++++|...|........ ...+|. .+--.
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 5544333322 44444332 333345556666666666666666666666665543200 011222 11111
Q ss_pred HHHHHHHc----------------------------------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007613 240 LMKACANA----------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (596)
Q Consensus 240 ll~~~~~~----------------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (596)
+...+-.. +...+|...+......+ ..++.+++.+...+.+...+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 12222222 34455555555555544 44556666666677777777
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007613 286 EFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (596)
Q Consensus 286 ~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (596)
..|.+-|....+. ...+|..+.-.|...|.+ .+..++|+++|.++.+.. +-|...-|.+.-.++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 6666655555432 122466666566654442 234667788888777765 55677777777778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPNTITYSILLVACERKDDVEVGLML 431 (596)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 431 (596)
|++.+|..+|.++.+... .+..+|-.+.++|...|++..|+++|+... ...-.-+......|.+++...|.+.++.+.
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 888888888888876542 344577778888888888888888887743 333344566677777888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHH
Q 007613 432 LSQAKEDGVIPNLVMFKCIIG 452 (596)
Q Consensus 432 ~~~~~~~g~~p~~~~~~~li~ 452 (596)
........+.-..+.+|..+-
T Consensus 739 ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHhCCccchHHhHHHHH
Confidence 777776444444455555443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.8e-13 Score=137.82 Aligned_cols=424 Identities=13% Similarity=0.067 Sum_probs=290.0
Q ss_pred CcccChhhHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC------
Q 007613 20 NYAHDVSEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP------ 90 (596)
Q Consensus 20 ~~~~~~~~~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 90 (596)
..|.++...+...-... ....+..+++++.+.-..+ +.++.....+...+...|++..+..+...+...
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 45677777776664444 3467788999999888877 677888888888888888888888877654321
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (596)
-..+|--+.++|-..|++++|...|....+.. +| +..+--|.+.|.+.|+++.+...|+.+.+.. +.+..+...|
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iL 382 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 23457788999999999999999998887653 34 3455678899999999999999999998763 4567778888
Q ss_pred HHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh----hCCCCCCCCHHHHHHH
Q 007613 169 IDGCAKAG----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN----AEVHPVDPDHITIGAL 240 (596)
Q Consensus 169 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~l 240 (596)
...|+..+ ..+.|..++.+....- +.|...|-.+...+-...- ..++..|.... .. +-.+.....|.+
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~--~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESK--GKQIPPEVLNNV 458 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHc--CCCCCHHHHHhH
Confidence 88888775 5677777777777653 4567788777766655443 33355554432 23 223556788999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------
Q 007613 241 MKACANAGQVDRAREVYKMIHKY---NIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGV----------- 300 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----------- 300 (596)
...+...|+++.|...|...... ...++. .+--.+...+-..++++.|.+.|..+.+..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 99999999999999999887665 112222 1222334444445555555555555544321
Q ss_pred ----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------
Q 007613 301 ----------------------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSN------ 351 (596)
Q Consensus 301 ----------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------ 351 (596)
..+...++.+...+.....+..|.+-|....+.- ..+|+.+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 1122223333333444444444444333333221 12455555555554432
Q ss_pred ------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 352 ------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (596)
Q Consensus 352 ------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (596)
.+..++|.++|.++.+.. +.|...-|.+.-.++..|++.+|..+|.+..+... -+..+|..+...|...|++
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHH
Confidence 345788999999888765 56778888899999999999999999999988643 3556788889999999999
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 007613 426 EVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (596)
Q Consensus 426 ~~a~~~~~~~~~~-g~~p~~~~~~~li~~~ 454 (596)
..|+++|+...+. +-..+..+.++|-.++
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 9999999987754 4455666666666654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.8e-12 Score=137.82 Aligned_cols=396 Identities=10% Similarity=0.057 Sum_probs=278.3
Q ss_pred HHhhhHHHHHHHHHHhhCCC--CCh-HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 007613 70 VCKSQKAIKEAFRFFKLVPN--PTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (596)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 146 (596)
...+.|+++.|+..|++... |+. .....++..+...|+.++|+..+++..... +........+...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34567889999999998763 432 123378888889999999999999988221 23344444556788889999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
+++|+++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++...
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999875 445777888889999999999999999999877 566666644444454466666799999999874
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCCH---HHHHHHH
Q 007613 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINCC-----SQTGDW---EFACSVY 292 (596)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~~---~~a~~~~ 292 (596)
.+.+...+..++....+.|-...|.++...-+..- .+....+ ..++..- ...+++ +.|+.-+
T Consensus 199 ---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 ---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 13346667788888999999988888776544221 1111111 1111100 012233 3455555
Q ss_pred HHHHhC-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 293 DDMTKK-GVIPDE-VF----LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 293 ~~m~~~-~~~p~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
+.+... +..|.. .. ..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..+++.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555441 222322 11 223344778899999999999999999877667788899999999999999999999997
Q ss_pred hCC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-------------CCCCHHH-HHHHHHHHHhcCCHHH
Q 007613 367 SIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTIT-YSILLVACERKDDVEV 427 (596)
Q Consensus 367 ~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~~ 427 (596)
... ..++......|..+|...+++++|..+++++.+.- ..||-.. +..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 542 12344446789999999999999999999998731 1133333 4455677889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCC
Q 007613 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG 474 (596)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~ 474 (596)
|.+.++.+.... .-|..+...+-+.+.. ...+|..+.+.....++.
T Consensus 435 Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 435 AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 999999998743 2355566666666653 677787777666555443
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=8.3e-12 Score=115.86 Aligned_cols=323 Identities=21% Similarity=0.270 Sum_probs=239.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhHH-HHHHHHHHHCC-----------
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAM-FEVFHEMVNAG----------- 157 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~a-~~~~~~m~~~g----------- 157 (596)
+++=|.|++. ..+|....+.-+++.|...|++.+...-..|+..-+ ...++.-| ++.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4456666664 456889999999999999998877776666655433 22121111 12222222211
Q ss_pred --------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 007613 158 --------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (596)
Q Consensus 158 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (596)
.+.+..++.+||.+.|+.-..++|.+++++-.....+.+..+||.+|.+-.-... .+++.+|... .
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq--k 268 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ--K 268 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh--h
Confidence 2567889999999999999999999999999888778999999999976554332 6788899876 7
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCC
Q 007613 230 VDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KGV 300 (596)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~ 300 (596)
+.||..|+|+++++.++.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ +..++.++.. +.+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 899999999999999999987754 5677889999999999999999999998888754 4555555443 223
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 301 IP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (596)
Q Consensus 301 ~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (596)
+| |...|.+.+..|.+..+.+.|.++...+.... +.|+ ..-|..+....++....+.-...|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 32 55678888899999999999999988766431 2333 2235667778888889999999999998766
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (596)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (596)
+-|+..+...++++..-.|.++-.-++|.++...|..-+...-.-++.-+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 6788888888899998899998888888888877754444444444444433
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.4e-13 Score=128.15 Aligned_cols=409 Identities=13% Similarity=0.193 Sum_probs=279.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC----CCCC----hHhHHHHHHHHHhcCCh
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPT----LSTFNMLMSVCASSKDS 108 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~ 108 (596)
-+.-..+|+..++-+.+...+|..-.+...+..++.+.+.+.+|+++|+.. |.-+ +...+.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 466788999999999998888877776667777788888999999998754 3222 23455555568889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------------CHhhHHHHH-----HH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP------------NVHTYGALI-----DG 171 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~------------~~~~~~~li-----~~ 171 (596)
+.|...|+...+. .|+..+--.|+-++.--|+-++..+.|.+|+.....+ +....|--| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999998875 6787766666666777899999999999998653332 222222222 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH---HH--H----------------HHHHHhccCCHHHHHHHHHHHhhCCC
Q 007613 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---FN--A----------------LITACGQSGAVDRAFDVLAEMNAEVH 228 (596)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~---~~--~----------------li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (596)
+-+.+ +.++++-.-.++..--+.|+-.. |. + -..-+.+.|+++.|.+++.-+.++..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 22233322223332222333110 10 0 01236788999999888877654321
Q ss_pred CCCCCHHHHHHH--HH----------------------------------HHHHcCChhHHHHHHHHHHhcCCCCCHHHH
Q 007613 229 PVDPDHITIGAL--MK----------------------------------ACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (596)
Q Consensus 229 ~~~~~~~~~~~l--l~----------------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (596)
... ...-+.| +. .....|++++|.+.+++....+..-....|
T Consensus 451 k~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 111 0111111 00 011237788888888888776532222233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (596)
| +.-.+-..|++++|++.|-++...-. -+...+..+...|....+..+|++++.+.... ++.|+.+.+-|.+.|-+.
T Consensus 529 n-iglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 N-IGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred H-hcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 3 33446678999999999877654311 26667777888888889999999998777655 577899999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 007613 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLML 431 (596)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~ 431 (596)
|+-.+|.+.+-.--+. ++-|..+..-|..-|....-.++|+..|++..- ++|+..-|..++..|. +.|+++.|..+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554432 355777888788888899999999999998765 7899999998887765 58999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (596)
Q Consensus 432 ~~~~~~~g~~p~~~~~~~li~~~~~ 456 (596)
++..... +..|......|+..++.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9988753 67788888888888764
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.1e-11 Score=125.71 Aligned_cols=372 Identities=13% Similarity=0.142 Sum_probs=278.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCChHhHHHHHHH
Q 007613 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSV 101 (596)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~ 101 (596)
+..-..-.|.+.-.|++++|..++.++++.+ |.+...+..++.++.++|+.+++...+-. ..+.|...|-.+-..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3344556677777899999999999999998 77778888899999999999999887654 345677899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH----HHHHHHHHhcCC
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY----GALIDGCAKAGQ 177 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~ 177 (596)
..+.|++++|.-.|.+.++.. +++...+---...|-+.|+...|.+-|.++.+..-+.|..-. -..+..+...++
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999876 666666666778899999999999999999986422222222 234555667787
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC-------------------------CCCCC
Q 007613 178 VAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVD 231 (596)
Q Consensus 178 ~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------------~~~~~ 231 (596)
-+.|.+.++.....+ -..+...++.++..+.+...++.|......+... +.+..
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 899999998887631 2334567788888899999999888877766541 11122
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (596)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (596)
++..++ -++-++.+....+....+.......++ ..+...|.-+..+|...|++.+|+++|..+......-+...|-.
T Consensus 376 ~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 333331 222334445555555556666666663 33567889999999999999999999999998766557889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHH
Q 007613 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALI 381 (596)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li 381 (596)
+..+|...|.+++|.+.+....... +.+...-.+|...+-+.|+.++|.++++.+.. .+..|+...-....
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999999875 55666777888889999999999999998652 22333444444455
Q ss_pred HHHHcCCChhHHHHHHHHHH
Q 007613 382 TALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~ 401 (596)
..+.+.|+.++=+.+...|.
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 66777888777655554443
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.2e-11 Score=112.49 Aligned_cols=256 Identities=16% Similarity=0.063 Sum_probs=118.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-CCHHHHHHHHHHHHHcCC
Q 007613 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-PDHITIGALMKACANAGQ 249 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~ 249 (596)
+|-...+.+++++-.+.....|++-+...-+....+.-...+++.|..+|+++.+.. +.. .|..+|+.++-.-.....
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHH
Confidence 334444555555555555555544333333333334444455555555555555431 111 233444444321111111
Q ss_pred hh-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 250 VD-RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (596)
Q Consensus 250 ~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (596)
+. .|..++ .+. +--+.|+..+.+.|.-.++.++|...|++.++.+.. ....|+.+..-|....+...|++-++
T Consensus 315 Ls~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 011111 111 111244455555555555555555555555554332 33445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007613 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (596)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (596)
.+++-+ +-|-..|-.|..+|.-.+...-|.-.|++..+.. +.|...|.+|..+|.+.++.++|++-|.+....| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 555543 4445555555555555555555555555555432 2345555555555555555555555555554433 123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 409 TITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
...+..|...+-+.++.++|.+.+++-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455555555555555555555555444
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=8.9e-15 Score=139.58 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=61.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 007613 100 SVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (596)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (596)
..+.+.|++++|++++....... .+.|...|..+...+...++.+.|.+.++++...+ +-++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccc
Confidence 33444455555555553322221 11222333333334444455555555555554433 1233344444444 345555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 007613 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (596)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (596)
++|.+++.+..+. .++...+..++..+.+.++++++.++++.+... ...+.+...|..+...+.+.|+.++|.+.++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555554444332 233344444444455555555555555544321 1223344444444455555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007613 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (596)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (596)
+..+.. |.+..+.+.++..+...|+.+++.++++...+.. ..|...+..+..++...|+.++|...++...+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 555443 3334444455555555555555444444443332 1122334444444455555555555555544432 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
+.+...+.+++.+.|+.++|.++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444445555555555555444443
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=1.2e-11 Score=124.18 Aligned_cols=290 Identities=11% Similarity=-0.034 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHHhhCCC--CC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007613 73 SQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (596)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (596)
..|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+.+....+....++..........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34677777777766542 32 2233344455667788888888888776543222223344456677778888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---hccCCHHHHHHHHHHHhh
Q 007613 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~~~~ 225 (596)
++.+.+.. +.+..++..+...+.+.|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88887764 446667778888888888888888888888877643 222221 111111 222222333334444433
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 226 EVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (596)
Q Consensus 226 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 302 (596)
... ..+.+...+..+...+...|+.++|.+++++..+... .+... ...........++.+.+.+.++...+....
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 210 1113566777777888888888888888888877642 22211 112222233456777788888777665332
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 303 DE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 303 ~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 55667788888888888888888854444446777778888888888888888888888754
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=6.5e-10 Score=108.84 Aligned_cols=451 Identities=11% Similarity=0.065 Sum_probs=292.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC--------CCCChHhHHHHHHH
Q 007613 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--------PNPTLSTFNMLMSV 101 (596)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~li~~ 101 (596)
..|-.|.+...++.|..+++...+.= |.+..+......+--.+|+.+...++.++. ..-+...|-.=...
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 34444555555555555555554432 333333333333333334444333333321 12344445555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (596)
|-..|..-.+..+.......|+... ..||+.-.+.|.+.+.++-|..+|...++.- +.+...|......=-..|..+
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHH
Confidence 6666666666666666666665432 4588888888889999999999998887653 456677887777777788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (596)
+...+|++.... ++-....|-....-+-..|++..|..++.+.... .+.+...|.+.+..-....+++.|..+|.+
T Consensus 568 sl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~---~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 568 SLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA---NPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh---CCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 888888888876 2444566666667777789999999988887753 122456777788888888889999999988
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007613 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (596)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (596)
.... .++..+|.--+...--.++.++|++++++.++.- |+ ...|-.+...+.+.++.+.|...|..-.+. ++-.
T Consensus 644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 7663 5667778777777778888999999998887762 34 346777777888888889888888766554 3555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
+..|-.|...--+.|.+-+|+.++++..-.+ +.+...|-..|..-.+.|..+.|..+..+..+. ++-+...|.--|..
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 6677788887888888889999998887655 567788888888888999999988888877664 45556667777766
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhhHHHHHHHHHHHHHcCC
Q 007613 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 498 (596)
..+.++--.... .+.+..-+|.+...-+-+--.-+.+++|..+.+..+.. .+..+..|.- +|+--+..|-
T Consensus 797 e~~~~rkTks~D---ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~---d~d~GD~wa~----fykfel~hG~ 866 (913)
T KOG0495|consen 797 EPRPQRKTKSID---ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK---DPDNGDAWAW----FYKFELRHGT 866 (913)
T ss_pred ccCcccchHHHH---HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccchHHHH----HHHHHHHhCC
Confidence 666666333333 33343334444332222211123677777775533222 2344445521 2222344565
Q ss_pred CCcHHH
Q 007613 499 IPTVEV 504 (596)
Q Consensus 499 ~p~~~~ 504 (596)
.-|..-
T Consensus 867 eed~ke 872 (913)
T KOG0495|consen 867 EEDQKE 872 (913)
T ss_pred HHHHHH
Confidence 555443
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=7.3e-10 Score=104.51 Aligned_cols=402 Identities=12% Similarity=0.078 Sum_probs=286.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (596)
.++.+..|..+|++.+..+ .-+..+....+..-.+++.+..|+.+++... +.-...|--.+-.=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 5778888999999998877 3455555556666777888999999998753 2222345555555566799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 007613 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (596)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 192 (596)
+|++-.+. .|+...|++.|+.=.+-..++.|..+|+..+-. .|++.+|--....=.++|....|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99988764 899999999999999999999999999998754 799999999999889999999999999887754 2
Q ss_pred C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCChhHHHHH--------HHHHH
Q 007613 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (596)
Q Consensus 193 ~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~ 261 (596)
- .-+...+.+...-=.++..++.|.-+|.-.+.. ++.+ ...|..+...--+-|+....... ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 0 111223444444344567788888888777653 2222 33444444443445554333322 34444
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-----HH---HhcCCHHHHHHHHHHHH
Q 007613 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALID-----FA---GHAGKVEAAFEILQEAK 331 (596)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~-----~~---~~~g~~~~a~~~~~~~~ 331 (596)
+.+ +.|-.+|--.+..-...|+.+...++|++.... +.|-. ..|...|- ++ ....+.+.+.++++...
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444 567778888888888889999999999988765 33321 12222221 11 24678888899998888
Q ss_pred HCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 332 NQGISVGIISYSSLMGACS----NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
+. ++-...||.-+--+|+ ++.++..|.+++...+. ..|-..++...|..-.+.++++....++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 74 4545566665554554 67888899998887764 46888888888888888899999999999988853 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 007613 408 NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGM 453 (596)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~ 453 (596)
|..+|......-...|+.+.|+.+|+..+.. .++.....|.+.|+.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 6678888888778889999999999988864 344455667777764
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=8.7e-11 Score=119.27 Aligned_cols=360 Identities=14% Similarity=0.086 Sum_probs=268.6
Q ss_pred hhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007613 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (596)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (596)
...|++++|.+++..+. +.+...|.+|...|-+.|+.++++..+-..-... +-|...|..+.....+.|.+++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 34589999999998764 4577899999999999999999998876665543 5577899999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHh
Q 007613 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF----NALITACGQSGAVDRAFDVLAEMN 224 (596)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~~~ 224 (596)
.|.+.++.. +++....---+..|-+.|+...|...|.++.....+.|..-+ ..+++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999875 556666666678899999999999999999987422222222 234556777788899999998887
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC---------------------------CCCHHHHHHHHH
Q 007613 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------KGTPEVYTIAIN 277 (596)
Q Consensus 225 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~li~ 277 (596)
... +-..+...++.++..+.+...++.|.........+.. .++..+ -.++-
T Consensus 308 s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 308 SKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred hhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 632 2234455678888889999999988887776655211 222222 12233
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 278 CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (596)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (596)
++......+....+...+.+..+ .-+...|.-+..++...|++.+|+.+|..+.....--+...|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 34444444444445555555553 3355678889999999999999999999999886666788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--------SLGLCPNTITYSILLVACERKDDVEV 427 (596)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (596)
+.|.+.|+...... +-+...--.|-..+-+.|+.++|++.+..+. ..+..|+..........+...|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998753 3345566677788899999999999999854 23355666666666777888888887
Q ss_pred HHHHHHHHH
Q 007613 428 GLMLLSQAK 436 (596)
Q Consensus 428 a~~~~~~~~ 436 (596)
-..+-..|+
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 555544443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=2.2e-14 Score=136.89 Aligned_cols=257 Identities=18% Similarity=0.153 Sum_probs=87.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CChHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 108 (596)
.+.+.+.|++++|++++++.......+.+..++..+..++...++.+.|+..++++.. .+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4555577777777777754433321245555655566666666777777777776542 233345555555 566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777665543 2445556666677777777777777777765432 234566677777777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 007613 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (596)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (596)
..+.. +-|....+.++..+...|+.+++.+++...... .+.|...+..+..+|...|+.++|...|++..+.. +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 77652 223556666777777777777766666665543 12333455666677777777777777777766654 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (596)
|+.+...+..++.+.|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66666777777777777777777666543
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.8e-11 Score=122.34 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=215.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCCHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (596)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 689999998887765542111 233444455557889999999999998875 45543332 3366788899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCH------HHHHHHHHHHHHcCChhHHHHH
Q 007613 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (596)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~ 256 (596)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998775 4457778888899999999999999999988752 233332 2344555555555666777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007613 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (596)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (596)
++.+.+.- +.++.....+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 77765543 567888999999999999999999999998875 3444221 2333445689999999999988775 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
-|...+..+...+.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+.+++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778889999999999999999999999875 68999988999999999999999999998643
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.3e-10 Score=105.87 Aligned_cols=308 Identities=10% Similarity=0.046 Sum_probs=231.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccC
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSG 211 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g 211 (596)
..++-.....+++.+-.+.....|++.+...-+....+.-...+++.|+.+|+++.+... --|..+|+.++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 345555567777888788888888776666666666666778899999999999998731 1256677777643 332
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (596)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (596)
+.. +..+.+-...-..+.|. |+..+.+-|+-.++.++|...|++..+.+ +....+|+.+.+-|....+...|+.-
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHH--HHHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 222 22222221111245554 67778888999999999999999999987 66778999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007613 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (596)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (596)
++...+-.+. |-..|-.+.++|.-.+...=|+-.|++..+.. +.|...|.+|..+|.+.++.++|.+.|......| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 9999987655 88999999999999999999999999998875 6789999999999999999999999999999866 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007613 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTITYS--ILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (596)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (596)
.+...+..|...|-+.++.++|...|++-.+ .|..-+..... -|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 4668899999999999999999999887654 34333322222 2344567788888887776666542 45554
Q ss_pred HHHHHHHH
Q 007613 446 MFKCIIGM 453 (596)
Q Consensus 446 ~~~~li~~ 453 (596)
-.++|+.-
T Consensus 542 eak~LlRe 549 (559)
T KOG1155|consen 542 EAKALLRE 549 (559)
T ss_pred HHHHHHHH
Confidence 45555443
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=2.2e-11 Score=121.64 Aligned_cols=283 Identities=9% Similarity=0.011 Sum_probs=216.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCCHHHH
Q 007613 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALITACGQSGAVDRA 216 (596)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a 216 (596)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 233333333 44447899999999999999875 55554333 335678889999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 007613 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~ 289 (596)
.+.++++.+. -+.+......+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...
T Consensus 173 l~~l~~~~~~---~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEV---APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999998764 2334667888889999999999999999999987754322 23444455555556667777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (596)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (596)
++++.+.+.- ..+......+...+...|+.++|..++....+. +++.... ++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777765542 337778888999999999999999999998884 4454322 3334445699999999999888764
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+.|.....++...+.+.+++++|.+.|+...+ ..|+..++..+..++.+.|+.++|.+++++...
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667788899999999999999999999987 579999999999999999999999999988764
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=1.9e-08 Score=98.89 Aligned_cols=416 Identities=13% Similarity=0.097 Sum_probs=331.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCChHhHHHHHH
Q 007613 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMS 100 (596)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~ 100 (596)
.++.++..|..-+.-...++|+-++.+..+.= |.+...... +.+..-++.|..++.+ ..+.+...|.+-..
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 34567778888888888888999998888753 444444333 3334456667666654 45678888988888
Q ss_pred HHHhcCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHh
Q 007613 101 VCASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (596)
.=-.+|+.+....++.+ +...|+..+..-|..=...|-..|..-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 77888999998888765 4457888898999888889999999999999999988887653 35789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 007613 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (596)
.+.++-|..+|...++. ++.+...|......--..|..+....+|++.... ++.....|....+.+-..|++..|+
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999998875 3456777877777777789999999999998864 3444566777778888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007613 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (596)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (596)
.++..+.+.. +.+..+|-+-+.....+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999998886 568899999999999999999999999998775 456677776666666789999999999998887
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (596)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (596)
++.-...|..+...+-+.++++.|...|..=.+. ++..+..|-.|...-.+.|+.-+|..+|++.+-.+ +-|...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3445678888889999999999999988765543 34456788888888888999999999999987653 446788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (596)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (596)
.|..-.+.|+.+.|..+..+.++. +..+-..|..-|-+..+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 999999999999999999888763 44555677777766543
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=5.4e-11 Score=119.54 Aligned_cols=288 Identities=11% Similarity=-0.010 Sum_probs=164.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHH
Q 007613 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (596)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 179 (596)
...|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. ...-+....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 34688888888887776643 33 334445567777788888888888887654 2443 23344567777788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH-HHH---HHHHcCChhHHHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMK---ACANAGQVDRARE 255 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-ll~---~~~~~g~~~~a~~ 255 (596)
.|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . ++...+.. -.. .....+..+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8888888888774 3356667777888888888888888888877642 2 12222211 111 1122222222223
Q ss_pred HHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 007613 256 VYKMIHKYNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID--FAGHAGKVEAAFEILQEA 330 (596)
Q Consensus 256 ~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~ 330 (596)
.+..+.+... +.++..+..+...+...|+.++|.+++++..+.........+. ++. .....++.+.+.+.++..
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHH
Confidence 3333333221 2356677777777777777777777777777653321111101 111 112234555555555555
Q ss_pred HHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007613 331 KNQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (596)
Q Consensus 331 ~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (596)
.+.. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5442 3333 4445566666666666666666663222222455555556666666666666666666553
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=4e-10 Score=101.35 Aligned_cols=221 Identities=16% Similarity=0.173 Sum_probs=124.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCCH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (596)
+++.++|.++|-+|.+.. +.+..+--+|.+.|.+.|.+|.|+++++.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356777888887777643 334556667777777778888888887777753 332 2334455566777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCChhHHH
Q 007613 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAR 254 (596)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~ 254 (596)
+.|.++|..+.+.+ .--......|+..|-...+|++|+++-+++... +-.+.. ..|.-+...+....+++.|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~--~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL--GGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--CCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 77777777777644 223445666777777777777777776665542 111111 11222333333344555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
.++.+..+.+ +.++.+--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5555555544 22333333444555555555555555555555543323344455555555555555555555555544
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.1e-11 Score=121.88 Aligned_cols=283 Identities=13% Similarity=0.082 Sum_probs=193.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007613 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDV 219 (596)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~ 219 (596)
+..+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456778888775543 23334556677788888888888888888887651 011345566555433221 11222
Q ss_pred H-HHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 220 L-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
+ +++... -+-...+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2 122211 12234588888888888888888888888888765 445678888888888888888888888877665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007613 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (596)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (596)
... +-..|.-+.-.|.+.++++.|.-.|+.+.+-+ +-+.+....+...+-+.|+.++|++++++..... +.|+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 332 33455666677888888888888888888776 4566667777778888888888888888887654 34554444
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
..+..+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|..+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 556667778888888888888887 45554 45667777888888888888888777763
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=2.3e-10 Score=107.10 Aligned_cols=418 Identities=17% Similarity=0.181 Sum_probs=264.1
Q ss_pred hcCCHHHHHHHHHHHHHc-----------CCC-----CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC----CChH-hH
Q 007613 37 RQGRISECIDLLEDMERK-----------GLL-----DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TF 95 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~-----------~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~ 95 (596)
.+|++.+|++--++.-++ |.+ .....+...+..-+.......+|+..|+-+.. ||.- .-
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk 240 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK 240 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee
Confidence 588888888765443221 211 11122223334445555667788888876542 2221 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 007613 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (596)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (596)
-.+...+.+..++..|++.++.....-...+- ...+.+.-.+.+.|.++.|+..|+...+. .||..+--.|+-+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIIC 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhh
Confidence 23445677888999999999877764222222 23444555677899999999999998876 6887776667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHHH-----HHhccCC--HHHHHHHHHHHhhCCCCCCC
Q 007613 172 CAKAGQVAKAFGAYGIMRSKNVK------------PDRVVFNALIT-----ACGQSGA--VDRAFDVLAEMNAEVHPVDP 232 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~------------p~~~~~~~li~-----~~~~~g~--~~~a~~~~~~~~~~~~~~~~ 232 (596)
+.--|+-++..+.|.+|...... |+....+.-|. -.-+.+. -++++-.-..+.. .-+.|
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~ 396 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAP 396 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccccc
Confidence 77789999999999999764322 33333332221 1111111 1112111111111 11223
Q ss_pred CHHH---H------------------HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHH---------------
Q 007613 233 DHIT---I------------------GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI--------------- 276 (596)
Q Consensus 233 ~~~~---~------------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--------------- 276 (596)
+-.. | -.-..-+.+.|+++.|.++++-+.+.+-+.-...-+.|-
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 2110 0 001234679999999999998776654322111111111
Q ss_pred ---------------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007613 277 ---------------------NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (596)
Q Consensus 277 ---------------------~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (596)
+.-..+|++++|.+.+++.+..... ....+-.+.-.+...|++++|++.|-.+... +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 0111347889999999988876322 1122222333567789999999988776543 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (596)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (596)
..+..+...+...|.-..+..+|.+++.+.... ++.|+....-|...|-+.|+-..|.+..-+--+. ++.|..|..-|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 345777778888898899999999998877653 3556778888999999999999998876654432 56677888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---hHHHHHHh
Q 007613 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR---RYEKARTL 464 (596)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~~~~a~~~ 464 (596)
..-|....-++.++.+|++..- +.|+..-|..+|..|.| .|.+|-++
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8888888889999999998776 78999999999988866 45555444
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2.4e-11 Score=119.57 Aligned_cols=283 Identities=11% Similarity=0.036 Sum_probs=189.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 007613 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGA 184 (596)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (596)
+.++|...|...... +.-+..+...+..+|...+++++|.++|+.+.+.. ...+..+|.+.+--+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 456777777774433 33344666677778888888888888888777642 1125666777665443221 1222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 185 Y-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 185 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
+ +.+.... +-.+.+|.++.++|.-.++.+.|++.|++..+ ++| ..++|+.+..-+.....+|.|...|+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2 1222221 33467888888888888888888888887764 355 567777777777777778888888887765
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (596)
.+ +.+--+|.-+.-.|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+++++++.... +-|+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhH
Confidence 54 223345555677788888888888888887776654 66667777777778888888888888877765 3333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007613 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (596)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (596)
-.-+..+...++.++|...++++++.- +.+...+-.+...|.+.|+.+.|+.-|.-+.+.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 344555666788888888888887642 233456667777888888888888888777764
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=8.8e-10 Score=102.29 Aligned_cols=285 Identities=15% Similarity=0.110 Sum_probs=190.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (596)
.|++..|+++..+-.+.+- -....|..-..+.-..|+.+.+-.++.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5888888888888777663 335566667777778888888888888887763355666677777778888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-------HHHHHHHHHHHHHcCChhHHHHHH
Q 007613 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (596)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~ 257 (596)
.+++.+.+ +-++.......++|.+.|++.....++..+.+.+ .-.| ..+|..++.-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88887765 4456777888888888888888888888887652 2222 234555555555545555544555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007613 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (596)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (596)
+..... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|.. .. .-.+.+-++...-.+..+...+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555443 2445566666777777777777777777777766655441 11 123345556555555555544442 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
++-.+.+|...|.+.+.+.+|...|+...+. .|+..+|+-+.++|.+.|+..+|.+..++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4466667777777777777777777765553 5677777777777777777777777766644
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1e-09 Score=98.78 Aligned_cols=297 Identities=13% Similarity=0.071 Sum_probs=205.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPD--RVVFNALITA 206 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~ 206 (596)
|-.=++.+. ..+.++|.++|-+|.+.. +.+..+.-+|.+.|-+.|..++|+++.+.+.++. .+-+ ......|..-
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 433444432 357899999999998753 3455667788899999999999999999888652 1111 1234456667
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhc
Q 007613 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQT 282 (596)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~ 282 (596)
|...|-+|.|.++|..+...+ .--......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+...
T Consensus 117 ym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 888899999999998887531 12234667788889999999999999888887764433 22355566666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (596)
.+.+.|..++.+..+.+.+ ++..--.+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888899998888876543 344444556677888999999999999888876666778888888999999999998888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 007613 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAK 436 (596)
Q Consensus 363 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~ 436 (596)
..+.+.. +....-..+...-....-.+.|...+.+-.. -+|+...+..++..-.. .|...+-..++..|+
T Consensus 273 ~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 273 RRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 8887754 3333444444444444455666666655544 37888888888876543 233344444444444
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=6.8e-09 Score=98.61 Aligned_cols=387 Identities=11% Similarity=0.075 Sum_probs=245.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CC-hHhHHHHHHHHHhcCChH
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSE 109 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~ 109 (596)
|.+.++|++++|++.+.+.++.. |....++......+...|++++..+.--+..+ |+ +..+..-.+++-+.|+++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 34458999999999999999876 66577777777888888999988887766543 33 335666666777888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CC--CCCCHhhHHHHHHHHHh------------
Q 007613 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK------------ 174 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g--~~~~~~~~~~li~~~~~------------ 174 (596)
+|+.=..-..-.+.--|..+-..+=+.+- ..|.+...+-.+ .+ +-|+....++....+-.
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 77643322211111111111111111111 111111111111 11 22333322222222210
Q ss_pred -------------cC---CHHHHHHHHHHHHhC---CCCCC---------HHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 175 -------------AG---QVAKAFGAYGIMRSK---NVKPD---------RVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 175 -------------~g---~~~~A~~~~~~m~~~---g~~p~---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
.+ .+..|.+.+.+-... ....+ ..+.......+.-.|+...|..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122232222221110 00011 111111112234467888888888888764
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007613 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (596)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 306 (596)
. +.+...|--+..+|....+.++..+.|....+.+ +.++.+|..-...+.-.+++++|..=|++.....+. +...
T Consensus 356 ~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 356 D---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred C---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 1 1122236667778999999999999999998887 667788888888888899999999999998887543 5556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHH--
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-------VSTM-- 377 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~~~-- 377 (596)
|.-+--+..+.++++++...|++.+++ ++-.+.+|+.....+...+++++|.+.|+...+. .|+ ...+
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhh
Confidence 666666667888999999999998887 4667889999999999999999999999988764 232 1111
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
-.++ .+.-.+++..|+.++++..+ +.|- ...|.+|...-.+.|+.++|+++|++...
T Consensus 508 Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 508 KALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 11234889999999999887 4454 56788888888999999999999988764
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.8e-10 Score=107.24 Aligned_cols=372 Identities=10% Similarity=0.029 Sum_probs=262.7
Q ss_pred HhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCChhHH
Q 007613 71 CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTLITTCAKSGKVDAM 146 (596)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~a 146 (596)
+....+.++|...|++....|+..+..+...... ..-.+.+.++.+.... ...++.....+.....-...-++.
T Consensus 151 y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~ 228 (611)
T KOG1173|consen 151 YVALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEES 228 (611)
T ss_pred hhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccc
Confidence 3445567888888887776777766665543322 1222222333332211 112223333333322111111111
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
...-.+-.-.+...+......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++...
T Consensus 229 ~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~ 307 (611)
T KOG1173|consen 229 LTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL 307 (611)
T ss_pred cccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 1111111112335566667777777888999999999999998874 667777777788899999988877777777653
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007613 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (596)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 306 (596)
.+....+|-++.--|...|+..+|++.|.+....+ +.-...|-.+...|.-.|..++|+..+...-+.-.. ....
T Consensus 308 ---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP 382 (611)
T KOG1173|consen 308 ---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLP 382 (611)
T ss_pred ---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-Ccch
Confidence 34456789999988999999999999999987765 333578999999999999999999998876553111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CCHHHHHHH
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL-K-PTVSTMNAL 380 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~-~~~~~~~~l 380 (596)
+--+.--|.+.++.+.|.+.|.+..... |.|+.+.+-+.-...+.+.+.+|...|+..... +- . .-..+++.|
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 2334446788899999999999998875 778889999988888899999999999987631 10 1 134568889
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
.++|.+.+.+++|+..+++.... .+-|..|+.++.-.+...|+++.|...|.+.+- +.|+..+...++..+
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999999999999999998875 355788999999999999999999999998876 789998888887654
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=4.1e-08 Score=93.01 Aligned_cols=363 Identities=14% Similarity=0.097 Sum_probs=270.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 007613 65 ARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKS 140 (596)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 140 (596)
...+..-.+++++..|+++|+... ..+...|--.+..=.++..+..|..++++.+.. -|- ...|-..+.+=-..
T Consensus 77 ikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 77 IKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHh
Confidence 333444556788999999999876 356677888888888999999999999998875 333 33555666666778
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007613 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (596)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (596)
|++..|.++|+.-.+. .|+...|++.|+.=.+.+.++.|..+|++..-. .|++.+|--....=-+.|....+.++|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998876 899999999999999999999999999999865 799999998888888999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH-------
Q 007613 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSV------- 291 (596)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~------- 291 (596)
.........-.-+...+.+....-.++..++.|.-+|+-..+.- +.+ ...|..+...--+-|+.......
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 98876311111123345555555556778899999998887753 333 45566666655566665433332
Q ss_pred -HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHH--------HHHhcCCHHHHHH
Q 007613 292 -YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-I-SYSSLMG--------ACSNAKNWQKALE 360 (596)
Q Consensus 292 -~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~li~--------~~~~~g~~~~A~~ 360 (596)
++.+.+.+.. |-.+|--.+..-...|+.+...++++.+...- +|-. . .|...|- .-....+++.+.+
T Consensus 310 qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 310 QYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444454433 66778778888888899999999999998764 4421 1 1222211 1135788999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHH----HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 361 LYEHMKSIKLKPTVSTMNALI----TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
+|+...+. ++....|+.-+- .-..++.+...|.+++.... |..|-..+|...|..-.+.++++..+.++++.+
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99988873 333445555443 33446788999999998877 578999999999999999999999999999999
Q ss_pred HcC
Q 007613 437 EDG 439 (596)
Q Consensus 437 ~~g 439 (596)
+.+
T Consensus 465 e~~ 467 (677)
T KOG1915|consen 465 EFS 467 (677)
T ss_pred hcC
Confidence 844
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=2.8e-09 Score=99.01 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=225.7
Q ss_pred hHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007613 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (596)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (596)
.|++.+|.++..+.. +.....|..-..+.-+.|+.+.+-..+.+..+.--.++...+-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 477888888876543 22344555556667788999999999999987633566777888888899999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHH
Q 007613 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (596)
+++.+.+ +.+.........+|.+.|++.....+..+|.+.|.-.|. .+|+.+++-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9988876 667888999999999999999999999999998865543 36777887777777777766677766
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC
Q 007613 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP 302 (596)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p 302 (596)
..+ ...+...-.+++.-+.++|+.++|.++..+..+.+..++. ...-.+.+-++.+.-++..+.-.+ .+.
T Consensus 256 pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-- 326 (400)
T COG3071 256 PRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-- 326 (400)
T ss_pred cHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--
Confidence 543 3445556677888899999999999999999988766551 122335566777777777766554 443
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (596)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (596)
++..+.++...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+..+|.+++++....-.+|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 4478899999999999999999999977775 58999999999999999999999999988764333333
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=3.7e-10 Score=114.22 Aligned_cols=264 Identities=15% Similarity=0.154 Sum_probs=146.2
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (596)
.||.+||.++|.-||..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+. .|...||+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 345555555555555555555554 5555554444444555555555555555444433 3445555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC
Q 007613 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (596)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (596)
..+|...|++.. ++..++ -.-.+...+...|--..-..++..+.- ..++.||..+ .+......|
T Consensus 90 l~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n---~illlv~eg 153 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAEN---AILLLVLEG 153 (1088)
T ss_pred HHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHH---HHHHHHHHH
Confidence 555555555433 111111 011112222223322222222222111 1233444332 333344556
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
.++.+.+++..++...... +... +++-+... ..+++-....+...+ .|++.+|..++..-...|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 6666666665554332111 1111 13322222 223333332222222 478899999999989999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007613 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (596)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (596)
.+|++.|++.+..-|..|+-+ .++..-+..+...|.+.|+.|+..|+...+..+.++|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999998888888887755 78888888888999999999999998888777777665
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=5.4e-08 Score=95.57 Aligned_cols=393 Identities=17% Similarity=0.164 Sum_probs=190.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
|+++|++..-...|+..++.=.+.....+....+.+..+.+-.+-+.+++++-..-++..-+-.|..+++.+++++|-+.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHH
Confidence 34788888888888877765433333334444455555555556666666654444444455566666666666666666
Q ss_pred HHHHHHc------CCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHH
Q 007613 115 LRLVQEA------GLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFG 183 (596)
Q Consensus 115 ~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~ 183 (596)
+...... ..+.+...|..+-+..++.-+.-. ...++..+... -+| ...|++|.+-|.+.|++++|.+
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6554421 112333344444444333322111 11122222211 122 2345555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHh-------------------------------------------------------
Q 007613 184 AYGIMRSKNVKPDRVVFNALITACG------------------------------------------------------- 208 (596)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~------------------------------------------------------- 208 (596)
+|++....- .+..-|+.+.++|+
T Consensus 270 vyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 270 VYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 555443321 11222222222221
Q ss_pred -----------ccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---
Q 007613 209 -----------QSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--- 268 (596)
Q Consensus 209 -----------~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 268 (596)
..|+..+-...+.+.... +.|- ...|..+.+.|-..|+++.|+.+|++..+-..+.-
T Consensus 348 nV~eW~kRV~l~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVKLYEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhhhhcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 123333344444444332 1221 22455566666677777777777776665443221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV----------IP-------DEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----------~p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
..+|..-...-.+..+++.|+++.++.....- .| +...|+..++.-...|-++....+++.+.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23455555555566666666666655432111 11 12334444444445566666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCC
Q 007613 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p 407 (596)
+..+.. +...-.....+-....++++.+++++-+..-..|++ ..|+..+.-+.+ .-.++.|..+|++..+ |++|
T Consensus 505 dLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 554322 221111222233444556666666655443334443 356655554442 2356777777777776 5655
Q ss_pred CHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 007613 408 NTITYSILL--VACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 408 ~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~ 436 (596)
...-+.-|+ .---..|....|..+++++.
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 533222222 22233566666777766654
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=3e-12 Score=85.60 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (596)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (596)
||..+||++|++|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777654
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=1.7e-09 Score=113.05 Aligned_cols=248 Identities=13% Similarity=0.017 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHhhCC--CC-ChHhHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007613 74 QKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (596)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (596)
.+++++|+.+|++.. .| +...|..+..++. ..+++++|...+++..+.. +.+...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456788999988764 33 3445555544433 2345789999999998875 557788888888899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 007613 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVL 220 (596)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 220 (596)
++++|...|++..+.+ +.+...+..+...+...|++++|+..+++..+.. |+ ...+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999998875 4557788889999999999999999999998774 43 233334455566789999999999
Q ss_pred HHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 221 AEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (596)
++.... ..|+ ...+..+...+...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+..
T Consensus 430 ~~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 888753 1243 3446667788889999999999998876553 334555666777777777 47777777765421
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007613 300 -VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (596)
Q Consensus 300 -~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (596)
..|....+ .-..+.-.|+.+.+... +++.+.+
T Consensus 504 ~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 33344555666666655 7777664
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.3e-08 Score=98.50 Aligned_cols=286 Identities=14% Similarity=0.052 Sum_probs=216.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (596)
Q Consensus 123 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (596)
..-++.......+-+-..+++.+..++++.+.+.. +++...+..-|.++.+.|+..+-..+=.+|.+. .+-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34556666666777778889999999999888765 667777777778888888888777777777765 2445778888
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
+.--|...|+..+|.+.|.....-...+ ...|......|+-.|..+.|...+....+.= +....-+--+.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence 8888888899999999998876432222 3467888888888899999988887665531 11111222334457778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNWQ 356 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~ 356 (596)
++++-|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+++.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 8999999999888765433 6777777777777788899999998877622 1 0113446889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
+|+..|++..... +.+..++.++.-.|...|+++.|.+.|.+... +.||..+-+.++..
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 9999999988764 67889999999999999999999999999876 78998887777763
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=2.4e-09 Score=99.36 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (596)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (596)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555666666677777777666665543 344556666666677777777777777766655432 44555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007613 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (596)
+...|++++|...+....+... +.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6677777777777777665421 2234455566677777777777777777776543 2345566777777777777877
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
|...+++.... .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777664 234455566666677777777777777766654
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=3.9e-09 Score=110.32 Aligned_cols=249 Identities=10% Similarity=0.041 Sum_probs=151.8
Q ss_pred CCHHHHHHHHHHHhc-----cCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHH---------HcCChhHHHHHHHH
Q 007613 195 PDRVVFNALITACGQ-----SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKM 259 (596)
Q Consensus 195 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~ 259 (596)
.+...|...+++... .+..++|.++|++..+. .|+ ...+..+..++. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 344555544444211 13456777778777653 444 334444444333 22346778888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007613 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (596)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (596)
..+.+ +.+..++..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...++++.+.+.. +.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 77776 556777777777777888888888888887776543 4556777777778888888888888887776522 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 007613 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVA 418 (596)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a 418 (596)
..+..++..+...|++++|...+++..+...+.+...+..+...+...|+.++|...++++... .|+..+. ..+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHH
Confidence 3333344445567788888888877765431223445666777777888888888888776542 4454443 334445
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 007613 419 CERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~ 454 (596)
+...| +.+...++.+.+. .-.+.......++..+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 55555 3666666665542 2233333334444443
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=2.7e-09 Score=98.98 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (596)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 2223344444444444444444444444444332 122333334444444
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (596)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (596)
..|++++|.+.+.+..... ........+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444443210 001111223333333444444444444444443332 22233333444444444444444
Q ss_pred HHHHHHHH
Q 007613 289 CSVYDDMT 296 (596)
Q Consensus 289 ~~~~~~m~ 296 (596)
...+++..
T Consensus 189 ~~~~~~~~ 196 (234)
T TIGR02521 189 RAYLERYQ 196 (234)
T ss_pred HHHHHHHH
Confidence 44444433
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=9.1e-12 Score=83.26 Aligned_cols=49 Identities=37% Similarity=0.661 Sum_probs=30.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007613 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (596)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (596)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666655
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.5e-07 Score=86.33 Aligned_cols=400 Identities=12% Similarity=0.053 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHHhhC
Q 007613 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (596)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (596)
---++.++.+.+...+..|.+-|........ .+.+..........+...++-+.|......+
T Consensus 44 qll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~ 123 (564)
T KOG1174|consen 44 QVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQV 123 (564)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcC
Confidence 3345566777788888889998887765421 1122222333344455566777888877777
Q ss_pred CCCCh-HhHHHHHHHHHhcCC--hHHH-------------HHHHHHHHHcC---------------CCCCHHHHHHHHHH
Q 007613 88 PNPTL-STFNMLMSVCASSKD--SEGA-------------FQVLRLVQEAG---------------LKADCKLYTTLITT 136 (596)
Q Consensus 88 ~~~~~-~~~~~li~~~~~~g~--~~~A-------------~~~~~~m~~~g---------------~~~~~~~~~~li~~ 136 (596)
|+.-. .--|.++.-+-+.|- ..+. ++.+.-..+.+ .+|...+....+.+
T Consensus 124 p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika 203 (564)
T KOG1174|consen 124 PPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKA 203 (564)
T ss_pred CccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHH
Confidence 64322 223334433333321 1111 11111111111 12222222333333
Q ss_pred HHhc--CChhHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCC
Q 007613 137 CAKS--GKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV-FNALITACGQSGA 212 (596)
Q Consensus 137 ~~~~--g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~ 212 (596)
++.+ ++...+...+-.+... -++-|+.....+.+.+...|+.++|+..|++.... .|+..+ .....-.+...|+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccC
Confidence 3332 3333333333333222 13445555666666666666666666666665543 222211 1111122334455
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (596)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (596)
++....+...+.... +-....|..-........++..|+.+-++..+.+ +.+...+-.-...+...|++++|.-.|
T Consensus 282 ~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred HhhHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 555555554444321 1111122222222334445556666555555544 333444444445555666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCC
Q 007613 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQKALELYEHMKSIKL 370 (596)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~ 370 (596)
+..+...+. +..+|..++..|...|++.+|..+-+...+. ++.+..+.+.+. ..+. ...--++|.++++.-.+.
T Consensus 358 R~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-- 433 (564)
T KOG1174|consen 358 RTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-- 433 (564)
T ss_pred HHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence 665544322 4556666666666666666665555444332 123333333331 1121 111235566666555443
Q ss_pred CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 371 KPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 371 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.|+ ....+.+...+...|..++++.++++... ..||....+.|...+.....++++...|...+.
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 343 23445555556666666666666666554 356666666666666666666666666666555
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=8.3e-10 Score=99.29 Aligned_cols=228 Identities=15% Similarity=0.003 Sum_probs=105.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007613 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (596)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (596)
.+.++|.+.|.+.+|.+.|+.-+.+ .|-..||..|-+.|.+..++..|+.++.+-.+.- +.++....-+...+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 4445555555555555555444432 2333344444455555555555555554444331 2232333334444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (596)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (596)
.++.++|.++++...+.... ++.....+...|.-.++++.|..+++++.+.|+ .++..|+.+.-+|.-.++++-+..-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 55555555555554443322 334444444444445555555555555555542 2344455554455555555555555
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 362 YEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 362 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
|++....--.|+ ...|-.+-......|++.-|.+-|+-...++ .-+...++.|.-.-.+.|++++|+.+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 554443222222 2334444444445555555555555444321 11234444444444555555555555555443
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=2.6e-10 Score=115.28 Aligned_cols=273 Identities=15% Similarity=0.141 Sum_probs=195.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (596)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (596)
.++..+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677788899999999999999999999998888 8888887777788888999999888888877665
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCCHHH
Q 007613 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEV 271 (596)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 271 (596)
.|-..+|+.|..+|...||+.. |+...+ ....+...+...|.-.....++..+.- .+.-||.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-- 142 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-- 142 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH--
Confidence 6778899999999999998765 222221 122234445555655555555544321 1222332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
...+.-....|.++.+++++..+...... |..+ +++-+..... +++-..+-..... .|++.+|..+++.-
T Consensus 143 -~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 143 -ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 23344455667788888887776543221 2111 2443333222 3333333322222 58999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (596)
...|+.+.|..++..|.+.|++-+..-|..|+-+ .+...-+..+++-|.+.|+.|+..|+...+..|...|.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999999888888888777 78888888999999999999999999988888777544
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=2.4e-07 Score=93.69 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCCCH--HHHHHHHHHHHhc
Q 007613 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--------------GVIPDE--VFLSALIDFAGHA 317 (596)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------~~~p~~--~~~~~li~~~~~~ 317 (596)
...+..+...|+| .+++.+-..|....+.+-..+++...... .-.|+. .++..+...|...
T Consensus 131 ~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 131 DEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 3444445555543 45555555555444444444444443321 012333 2345556667778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 007613 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (596)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 397 (596)
|++++|+++++..++.. |-.+..|..-...|-+.|++.+|.+.++...... .-|...-+-.+..+.++|+.++|.+++
T Consensus 208 g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888877764 3336677777777888888888888888777654 345555556667777888888888888
Q ss_pred HHHHhCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 398 SDMKSLGLCPNTI------TY--SILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 398 ~~m~~~g~~p~~~------t~--~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
....+.+..|-.. .| .-...+|.+.|++..|++-|..+.+
T Consensus 286 ~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 286 SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7776655433221 12 2345678888888888877776654
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=3.4e-06 Score=83.56 Aligned_cols=390 Identities=13% Similarity=0.119 Sum_probs=210.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (596)
..+++...+.+.+.+.+.. |......+..+-.+...|+.++|........ ..+.++|..+.-.+-...++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 4566777777777766643 3333333333333334456666666665443 2455677777666666677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 007613 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (596)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 192 (596)
.++.....+ +.|...+.-+--.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|..+.++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777777654 4456666655555556666666666655555442 3344556666666667777777777776666543
Q ss_pred CCCCHHHHHHHH------HHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 007613 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (596)
Q Consensus 193 ~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (596)
-.|+...+.-.. ....+.|..++|.+.+..-... +......-.+-...+.+.+++++|..++..+..++ +
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-P 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-P 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-c
Confidence 234444433222 2234556666666655443321 11111122233455666667777777776666653 2
Q ss_pred CCHHHHHHHHHHHHhcCCH-----------------------------------HHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 267 GTPEVYTIAINCCSQTGDW-----------------------------------EFACSVYDDMTKKGVIPDEVFLSALI 311 (596)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~-----------------------------------~~a~~~~~~m~~~~~~p~~~~~~~li 311 (596)
.+..-|-.+..++.+..+. +..-+++..+.+.|+.+ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 2222223333333222221 22223333444444432 233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-
Q 007613 312 DFAGHAGKVEAAFEILQEAKN----QG----------ISVGIISY--SSLMGACSNAKNWQKALELYEHMKSIKLKPTV- 374 (596)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~- 374 (596)
..|-.....+-..++...+.. .| -+|....| -.++..|-+.|+++.|....+...++ .|+.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 333222111111111111111 10 13444333 35666777888888888888888765 4553
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007613 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (596)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (596)
..|..=.+.+...|.+++|...+++..+.. .||...=+.-..-..++.+.++|.++.....+.|.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 345555677788888888888888877643 34544433445555677888888888888777664
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=7.4e-06 Score=80.38 Aligned_cols=419 Identities=16% Similarity=0.140 Sum_probs=237.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHH--HHHHHH
Q 007613 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVCA 103 (596)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~~ 103 (596)
..-....|...++|.+++|.+...++...+ |.+......-.-...+.+.+++|+.+.+.-.... +++. +=++||
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHH
Confidence 344556677779999999999999999987 5554443333334556788999997766543211 1122 234444
Q ss_pred --hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHH
Q 007613 104 --SSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVA 179 (596)
Q Consensus 104 --~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~ 179 (596)
+.+..++|+..++ |..+ |..+...-...+-+.|++++|.++|+.+.+.+.+- +...-..++..-.
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------ 157 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------ 157 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH------
Confidence 6789999999887 3333 34466666778889999999999999997664221 1111111111110
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH---HHHhccCCHHHHHHHHHHHhh--------CCCC---CCCCH-HHHHHHHHHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDH-ITIGALMKAC 244 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~~~~--------~~~~---~~~~~-~~~~~ll~~~ 244 (596)
+... +.+......| ..+|..+. -.+...|++.+|++++..... ...+ +..+. ..-..+.-.+
T Consensus 158 -~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 158 -ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred -hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 0111 0122222122 22333333 234556777777777766621 0000 00000 0112233445
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHh---------------------------------------
Q 007613 245 ANAGQVDRAREVYKMIHKYNIKGTPE----VYTIAINCCSQ--------------------------------------- 281 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~--------------------------------------- 281 (596)
-..|+.++|..++..+.+.+. +|.. .-|.++..-..
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777766652 2211 11111111000
Q ss_pred ------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007613 282 ------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (596)
Q Consensus 282 ------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (596)
.+..+.+.++-.... +..|. ..+..++..+.+ ......+..++...-+....-...+.-..+......|
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 011111111111111 12232 334444444332 2246677777777666543333556667777888999
Q ss_pred CHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHH----HHH
Q 007613 354 NWQKALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILL----VAC 419 (596)
Q Consensus 354 ~~~~A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll----~a~ 419 (596)
+++.|.+++. .+.+.+..|- +...+...+.+.++.+-|..++.+.... .-.+......+++ .--
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 9999999999 6666555554 4455677777777777787777776432 1122223333333 334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hHHHHHHhhhhhh
Q 007613 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVL 469 (596)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~~ 469 (596)
.+.|+-++|..+++++.+.. .+|..+...++.+|++ .-++|..+...+.
T Consensus 469 lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKKLP 518 (652)
T ss_pred HhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhcCC
Confidence 56799999999999999842 4677889999999988 6677777766543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3.1e-09 Score=95.69 Aligned_cols=234 Identities=14% Similarity=0.080 Sum_probs=187.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (596)
-+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..|-+.|.+..+...|+.++.+-... ++-|+....-+...+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHH
Confidence 367888999999999999999888876 667778888889999999999999999887653 333333344456777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (596)
-..++.++|.++++...+.. +.++.+...+...|.-.++++.|+..++++++.|+. +...|..+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88889999999999988876 566677777788888899999999999999999987 7888888888888889999999
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 325 EILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 325 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
.-|++....-..|+ ..+|-.|.......|++..|.+.|+-....+ ..+..++|.|.-.-.+.|+.++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 98888876544343 3467778777888999999999999887654 34567888888888899999999999988776
Q ss_pred CCCCCC
Q 007613 403 LGLCPN 408 (596)
Q Consensus 403 ~g~~p~ 408 (596)
+.|+
T Consensus 458 --~~P~ 461 (478)
T KOG1129|consen 458 --VMPD 461 (478)
T ss_pred --hCcc
Confidence 4555
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=6.1e-07 Score=85.70 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=104.2
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (596)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (596)
-.|+.-.|..-|+...+....+ ...|--+...|....+.++..+.|.+..+.+.. |+.+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 3456666666666666654222 233555556666666666666666666665543 44455555555555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007613 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (596)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (596)
-|++.+... +-+...|-.+.-+.-+.+.++++...|++.++. ++..+..|+.....+...+++++|.+.|+...+ +
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--L 491 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--L 491 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--h
Confidence 666666554 334445555555555666666666666666543 233455666666666666667777766666554 2
Q ss_pred CCC-------HHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 406 CPN-------TITYS--ILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 406 ~p~-------~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.|+ ..++. .++ .+.-.+++..|.+++++.++
T Consensus 492 E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc
Confidence 332 11111 111 11223666666666666665
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=1.4e-07 Score=95.43 Aligned_cols=288 Identities=14% Similarity=0.119 Sum_probs=156.2
Q ss_pred HhhhHHHHHHHHHHhhCCC--CC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CC
Q 007613 71 CKSQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GK 142 (596)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~ 142 (596)
+...|++++|+..++.... .| ..........+.+.|+.++|..++..+.+.+ +.|..-|..+..+..-. .+
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccccc
Confidence 3444555566555544221 22 3344555666777888888888888887775 34444455555554222 24
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007613 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (596)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (596)
.+...++|+++... -|.......+.-.+..-..+. .+...+..+..+|++ .+|+.|-..|.......-..+++.
T Consensus 93 ~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHH
Confidence 56667777776654 233333333322222222232 344455666667753 355566666665555544445554
Q ss_pred HHhhCC---C---------CCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 222 EMNAEV---H---------PVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (596)
Q Consensus 222 ~~~~~~---~---------~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (596)
...... . .-+|... ++..+...|...|++++|+++.++..+.. +..+..|..-...|-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 443210 0 0123322 33444555666777777777777666654 3345666666677777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHH
Q 007613 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------YSSLMGACSNAKNWQKAL 359 (596)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~ 359 (596)
|.+.++........ |...-+..+..+.+.|+.++|.+++....+.+..|-... ......+|.+.|++..|.
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777766666544 556666666666677777777777666655543221111 123344555666666655
Q ss_pred HHHHHHH
Q 007613 360 ELYEHMK 366 (596)
Q Consensus 360 ~~~~~m~ 366 (596)
+.|..+.
T Consensus 326 k~~~~v~ 332 (517)
T PF12569_consen 326 KRFHAVL 332 (517)
T ss_pred HHHHHHH
Confidence 5555444
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=1.3e-07 Score=94.45 Aligned_cols=169 Identities=13% Similarity=0.142 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-C
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-V 193 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 193 (596)
..+...|...|...|+++.|..++....+. |. .|.+. ..+.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566777788888888888777776543 20 12222 2333555667777777777777766532 2 1
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCC---CC-CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcC---
Q 007613 194 KPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEV---HP-VDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYN--- 264 (596)
Q Consensus 194 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--- 264 (596)
.|. ..+++.|..+|.+.|++++|...+++..... .+ ..|.+ ..++.+...|...+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111 3345566666777777776666655543210 01 11111 123344445555566666665555443210
Q ss_pred CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 265 IK----GTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (596)
Q Consensus 265 ~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (596)
.. .-..+++.|...|.+.|++++|.++|++.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 00 11234455555555555555555555544
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=5.2e-06 Score=76.20 Aligned_cols=411 Identities=13% Similarity=0.093 Sum_probs=233.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (596)
..-++.+.++..|+.+++--...+- .....+..-+...+-..|++++|+..|..+. .++...+-.|.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5556778888888888876654442 1222333334444556788888888887653 34555565555555556778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
.+|..+.... +.++..-..|+....+.++-++-..+.+.+.. +..---+|.+..-..-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765543 22333444455566667776666666666543 1223334555544555678888888887
Q ss_pred HhCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc--CCh---------------
Q 007613 189 RSKNVKPDRVVFNAL-ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--GQV--------------- 250 (596)
Q Consensus 189 ~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~--------------- 250 (596)
... .|+-...|.- .-+|.+..-++-+.++++-..++ ++.+....|.......+. |+.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 765 4455555543 34566666677777776666653 222233333332222221 111
Q ss_pred ------------------hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 251 ------------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (596)
Q Consensus 251 ------------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (596)
+.|++++--+.+. -+.+.-.|+-.|.+.++..+|..+.+++.-. .|-......+..
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHH
Confidence 1222222221111 1244556677788999999999887765432 343333333332
Q ss_pred HH-Hh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007613 313 FA-GH----AGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (596)
Q Consensus 313 ~~-~~----~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (596)
+. .+ ...+.-|.+.|+..-..+..-| ..--.++...+.-..++++..-.++.+...-...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 21 11 1224556666665555543322 2233455566666778888888888887655455555555 6788999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhh
Q 007613 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465 (596)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~ 465 (596)
.|.+.+|.++|-+.....+ .|..+|.+++ +.|.+.+..+.|+.++ ++..-..+... |+...+..--+|+++-
T Consensus 406 tgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fs---LLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFS---LLQLIANDCYKANEFY 478 (557)
T ss_pred hcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHH---HHHHHHHHHHHHHHHH
Confidence 9999999999988765433 3667776554 5678889988887665 44433333333 3333333223455554
Q ss_pred hhhhhcc
Q 007613 466 EHVLSFN 472 (596)
Q Consensus 466 ~~~~~~~ 472 (596)
-+.+.|+
T Consensus 479 yaaKAFd 485 (557)
T KOG3785|consen 479 YAAKAFD 485 (557)
T ss_pred HHHHhhh
Confidence 4444443
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=1.1e-07 Score=94.97 Aligned_cols=240 Identities=17% Similarity=0.128 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhC---CCC-CCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhc-----C--
Q 007613 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (596)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-- 264 (596)
..+...+...|...|+++.|..++...... ..| ..|...+ .+.+...|...+++++|..+|+.+... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666888899999999999888876542 112 1233333 333667888889999999998887542 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 007613 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (596)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 334 (596)
.+.-..+++.|...|.+.|++++|...+++..+ .|.. |.. .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 112245677778889999999888888776543 1222 122 24666777888899999999998876542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHcCCChhHHHHHHHHHH--
Q 007613 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLK--P-TVSTMNALITALCDGDQLPKTMEVLSDMK-- 401 (596)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 401 (596)
+.+ -..+++.|...|-+.|++++|+++|+.+.+. +.. + ....++.|...|.+.+...+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2457899999999999999999999988742 111 1 23467788888999999999999988743
Q ss_pred --hCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 402 --SLGLC-PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 402 --~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
..|.. |+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33321 33 3568899999999999999999988776
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=2.9e-06 Score=77.83 Aligned_cols=401 Identities=10% Similarity=0.080 Sum_probs=244.6
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHh
Q 007613 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (596)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (596)
.++..|-..+ +.|++++|+..+..+......|....+ .+.-..--.|.+.+|..+-.+.++ ++..-..++...-+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v--nLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV--NLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch--hHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 3667776666 899999999999988876643322222 222222235788899888777653 44445556666667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH-HHHHhcCCHHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFG 183 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~ 183 (596)
.++-++-..+++.+... ..--.+|....-..-.+.+|+++|.+.... .|+-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 77777777777666532 122333444444445688999999998865 35555555443 35667777777777
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhcc--CCH---------------------------------HHHHHHHHHHhhCC
Q 007613 184 AYGIMRSKNVKPD-RVVFNALITACGQS--GAV---------------------------------DRAFDVLAEMNAEV 227 (596)
Q Consensus 184 ~~~~m~~~g~~p~-~~~~~~li~~~~~~--g~~---------------------------------~~a~~~~~~~~~~~ 227 (596)
++.-..+. .|| +...|....-..+. |+. +.|++++--+..
T Consensus 207 vl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~-- 282 (557)
T KOG3785|consen 207 VLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK-- 282 (557)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--
Confidence 77766654 333 44444333322221 221 122222211111
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-----YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (596)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 302 (596)
.-|. .-..|+-.|.+.+++.+|..+.+.+... .|-..+ +.++..-........-|.+.|...-+++..-
T Consensus 283 --~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 283 --HIPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred --hChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 1121 2234555688999999999887765321 121122 2222222223334566777777665555433
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HH
Q 007613 303 DEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN-AL 380 (596)
Q Consensus 303 ~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l 380 (596)
|.. --.++.+.+.-..++++.+-++..+..--...|...+| +..+++..|++.+|+++|-++....+ .|..+|. .|
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~L 434 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSML 434 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHH
Confidence 322 12334445555677888888888887765555665555 78899999999999999998875443 3455665 45
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
.++|.+++.++-|..++-++. -+.+..+.. .+..-|.+.+.+--|-+.|+.+.. ++|++.-|..=-.+|
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 678999999999987766554 233444544 344679999999999999998887 567777665443343
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=3.6e-07 Score=87.46 Aligned_cols=219 Identities=11% Similarity=-0.016 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (596)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (596)
+..+.++.-+.+++... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666431 22333 2446666677788888888888888887775 55678888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (596)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (596)
...|++..+.... +..++..+..++...|++++|.+.++...+.. +.+. ........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888888876543 45667777777888888888888888887764 2222 1222222334567788888888665532
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-----LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (596)
. .|+. |. ........|+..++ +.+..+.+.. +.| ...+|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2222 22 12222335555544 3455544320 111 23468888888999999999999999998744
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=2.9e-05 Score=77.04 Aligned_cols=454 Identities=12% Similarity=0.148 Sum_probs=288.6
Q ss_pred hhHHHHHHHHH--hcCCHHH-HHHHHHHHHHcCCCCchHHHHHHHH-HH------Hh-------hhHHHHHHHHHHhhCC
Q 007613 26 SEQLHSYNRLI--RQGRISE-CIDLLEDMERKGLLDMDKVYHARFF-NV------CK-------SQKAIKEAFRFFKLVP 88 (596)
Q Consensus 26 ~~~~~~~~~l~--~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~~l~-~~------~~-------~~~~~~~A~~~~~~~~ 88 (596)
+-++.+|-.+| +.|.... -..+|++..+.-. .....++..+- +. |- -++.++.++.++.+||
T Consensus 24 p~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp-~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmp 102 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAGSPDKQRNLLYERALKELP-GSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMP 102 (835)
T ss_pred chhHHHHHHHHHHHccCChHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 45778898888 5665544 4566788877642 12233333221 11 11 1233444555544554
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (596)
..|-..+....+.|++..-...|+.....= +.-....|...+......+-++-+..++++.++ .++..-+-
T Consensus 103 ----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~ee 174 (835)
T KOG2047|consen 103 ----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREE 174 (835)
T ss_pred ----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHH
Confidence 468888888899999999999999887642 222355788899988899999999999999985 45555788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHhccCCHH---HHHHHHHHHhhCCCCCCCC--HHH
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSKN------VKPDRVVFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPD--HIT 236 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~--~~~ 236 (596)
-|..+++.+++++|-+.+....... .+.+-..|..+-...++.-+.- ....++..+. +.-+| ...
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi----~rftDq~g~L 250 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI----RRFTDQLGFL 250 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc----ccCcHHHHHH
Confidence 8889999999999999998876431 2445556776666666554332 2233444443 33455 457
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----------------C------CHHHHHHHHHH
Q 007613 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----------------G------DWEFACSVYDD 294 (596)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~ 294 (596)
|++|.+.|.+.|.+++|..+|++....-.. ..-|+.+-++|.+- | +++-...-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 899999999999999999999987765221 12222333333221 1 12233333444
Q ss_pred HHhCCC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHH
Q 007613 295 MTKKGV----------IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GIISYSSLMGACSNAKNWQK 357 (596)
Q Consensus 295 m~~~~~----------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 357 (596)
+...+. .| ++..|..-+. ...|+..+-...+.++.+. +.| -...|..+.+.|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 333221 01 2223332222 2346777778888887764 122 23468889999999999999
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----------CCCC-------CHHHHHHHHH
Q 007613 358 ALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL----------GLCP-------NTITYSILLV 417 (596)
Q Consensus 358 A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~~p-------~~~t~~~ll~ 417 (596)
|+.+|++..+...+.- ..+|......-.++.+++.|+++.++.... |-.| +...|+.+++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999987554222 345666667777889999999998887531 1111 2234666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCC-----ccchhhhHH--------
Q 007613 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR-----PQIENKWTS-------- 484 (596)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~-------- 484 (596)
.--..|-++..+.+++++++..+.....+-|. +--+++-.-++++.+.|+.+- |..-..|++
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~Ny-----AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINY-----AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 66778888999999999988765433333332 112455555666666776652 223346665
Q ss_pred -------HHHHHHHHHHHcCCCCcHH
Q 007613 485 -------LALMVYREAIVAGTIPTVE 503 (596)
Q Consensus 485 -------~a~~~~~~m~~~g~~p~~~ 503 (596)
.|-.+|++.++ |+.|...
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 28889999887 7778764
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=3e-07 Score=87.97 Aligned_cols=149 Identities=15% Similarity=0.065 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007613 107 DSEGAFQVLRLVQEAG-LKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (596)
Q Consensus 107 ~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (596)
..+.++.-+..+.... ..|+ ...|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555554322 1111 2345555556666666666666666666543 3345666666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007613 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (596)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (596)
.|++..+.. +-+..+|..+..++...|++++|.+.|+..... .|+..........+...++.++|...|....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666542 123445555556666666666666666665542 2332211111222333455666666664433
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=4.8e-07 Score=78.21 Aligned_cols=198 Identities=11% Similarity=0.049 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (596)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (596)
+...|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +....|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456667888888888888888888876 666778888888888888888888888888776544 5566777777788
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007613 316 HAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (596)
..|++++|.+.|++..... ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888877653 22234577777777788888888888888888764 233456677788888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.+++.....+. ++..+.-..|..-...|+.+.+-++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888776654 7888777777777888888877776666665
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.02 E-value=2.3e-05 Score=77.85 Aligned_cols=351 Identities=13% Similarity=0.119 Sum_probs=237.5
Q ss_pred hhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007613 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (596)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (596)
..+++...+++.+.+. +....|.....-.+...|+-++|....+.-.+.. ..+.+.|..+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3466666666665553 2234455555555777899999999988877754 45678899888888888999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 007613 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (596)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (596)
|......+ +.|...|.-|.-.-++.++++.......++.+.. +.....|..+..++.-.|+...|..++++..+...
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 99999876 5678888888777788899998888887777652 33466788888899999999999999999887532
Q ss_pred CCCCHHHHHHHH------HHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 230 VDPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (596)
Q Consensus 230 ~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (596)
-.|+...+.-.. ....+.|.++.|.+.+......- ......-..-...+.+.+++++|..++..++... ||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 245555543332 34467788888888777654431 2222334456778899999999999999999874 56
Q ss_pred HHHHHHHHH-HHHhcCCHHHHH-HHHHHHH----------------------------------HCCCCCCHHHHHHHHH
Q 007613 304 EVFLSALID-FAGHAGKVEAAF-EILQEAK----------------------------------NQGISVGIISYSSLMG 347 (596)
Q Consensus 304 ~~~~~~li~-~~~~~g~~~~a~-~~~~~~~----------------------------------~~~~~~~~~~~~~li~ 347 (596)
..-|.-.+. ++.+-.+.-++. .+|.... +.|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 665554444 333232322332 3444332 333222 2233333
Q ss_pred HHHhcCCHHHHHHHHHHHH--------hCC----------CCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 348 ACSNAKNWQKALELYEHMK--------SIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~--------~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
.|-.....+ +.+++. ..| -+|+...|+ .++..|-+.|+++.|...++.... ..|
T Consensus 329 Lyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTP 402 (700)
T KOG1156|consen 329 LYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTP 402 (700)
T ss_pred HHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCc
Confidence 232211111 222222 111 156666665 467778899999999999999886 467
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 408 NTI-TYSILLVACERKDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 408 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (596)
+.+ -|..=.+.+.+.|++++|..++++..+..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 754 45566688899999999999999998753
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=4.8e-07 Score=78.19 Aligned_cols=198 Identities=16% Similarity=0.072 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344555666666666666666666553 3345566666666666666666666666666542 2234455566666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
.|++++|.+.|++..... ...--..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 666666666666665431 111123355555555566666666666666666654 333455555666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (596)
..++.....+. ++..++-..|..--..|+.+.+-+.=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666665554 5555555556655666666555555444444
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=1e-05 Score=74.08 Aligned_cols=316 Identities=12% Similarity=0.087 Sum_probs=157.6
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHH--
Q 007613 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM-- 99 (596)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li-- 99 (596)
|-++...+..-+.|+..|++.+|+.-|...++.+ |.+......-...+...|....|+.-|..+.+..+..+.+-+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 3445555556666666777777777777766655 444444333444444455555555555444321111122222
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcCCCCC--HHH------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh
Q 007613 100 -SVCASSKDSEGAFQVLRLVQEAGLKAD--CKL------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (596)
Q Consensus 100 -~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (596)
..+.+.|.+++|..=|+.+.+.....+ ... ....+..+...|+...|+.....+++.. +.|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 245666777777777766665431110 001 1112223334456666666666655543 445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (596)
+..-..+|...|++..|+.-++...+.. .-++.++.-+-..+...|+.+.++...++.++ +.||...+-..-.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~YK-- 264 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPFYK-- 264 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHHHH--
Confidence 6666666666666666655554444332 22344444455555556666666665555552 3455332211100
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHH
Q 007613 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF---LSALIDFAGHAGKVE 321 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~ 321 (596)
+ +.+..+.++.| ......++|.++++-.+...+......... +..+-.++...|++.
T Consensus 265 -k---lkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 265 -K---LKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred -H---HHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 0 01111111111 112334556666666666555443312222 223333444556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (596)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (596)
+|++.-.++.+.. +.|+.++.--..+|.-...++.|+.-|+...+.
T Consensus 325 eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 325 EAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7776666666543 334666666666666666677777777766654
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.5e-05 Score=78.22 Aligned_cols=392 Identities=13% Similarity=0.103 Sum_probs=218.1
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH--HhhhHHHHHHHHHHhhCCCCChHhHHHHH
Q 007613 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV--CKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99 (596)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~li 99 (596)
|++...--.-.=+||+.+++++|+.+.+.-.... ..+... +-.+ ..+.+..++|+..++-..+.+..+...-.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~A 117 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFF---FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRA 117 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhh---HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHH
Confidence 3333333334445679999999996655433211 111111 1111 23567889999999855555666777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH---HHHhc
Q 007613 100 SVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID---GCAKA 175 (596)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~---~~~~~ 175 (596)
..+-+.|++++|+.+|+.+.+.+... +...-..++.+-.. -.+. +.+... ..| ..+|..+.+ .+...
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQSVP---EVP-EDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHhcc---CCC-cchHHHHHHHHHHHHhc
Confidence 88999999999999999998776321 11111111111110 1111 122222 122 223333332 34567
Q ss_pred CCHHHHHHHHHHHHhC-------C------CCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH-HHH
Q 007613 176 GQVAKAFGAYGIMRSK-------N------VKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI-GAL 240 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~-------g------~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~l 240 (596)
|++.+|+++++..... + +.-+..+. ..|.-.+-..|+..+|.+++...++....-.|...++ |.+
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 8888888888777211 1 00011111 1233455667888888888877776422111111111 111
Q ss_pred HHHHHHcCCh----------------------------------------------hHHHHHHHHHHhcCCCCCHHHHHH
Q 007613 241 MKACANAGQV----------------------------------------------DRAREVYKMIHKYNIKGTPEVYTI 274 (596)
Q Consensus 241 l~~~~~~g~~----------------------------------------------~~a~~~~~~~~~~~~~~~~~~~~~ 274 (596)
+. .....++ +.+.++-.... +..| ...+.+
T Consensus 269 va-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ 344 (652)
T KOG2376|consen 269 VA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSP-ESLFPI 344 (652)
T ss_pred hh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHH
Confidence 11 1111100 01111100000 1122 233444
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 007613 275 AINCCSQT--GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSS 344 (596)
Q Consensus 275 li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 344 (596)
++....+. ..+..+.+++...-+....-.....-..+......|+++.|.+++. .+.+.+..| .+...
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~a 422 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGA 422 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHH
Confidence 44433322 2466777777776665433234556666777888999999999999 555555444 45566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 345 LMGACSNAKNWQKALELYEHMKSI--KLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
++..|.+.++-+.|..++.+.... .-.+. ..+|.-+...-.+.|+-++|..+++++.+. -++|..+...++.+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHH
Confidence 778888888887788888776531 00112 233444444556789999999999999985 36788899999999
Q ss_pred HHhcCCHHHHHHHHHHH
Q 007613 419 CERKDDVEVGLMLLSQA 435 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~ 435 (596)
|++. +.+.|..+-..+
T Consensus 502 ~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 502 YARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhc-CHHHHHHHhhcC
Confidence 9886 567777665544
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=8.9e-06 Score=80.84 Aligned_cols=303 Identities=15% Similarity=0.027 Sum_probs=149.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---H
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA---L 203 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---l 203 (596)
.|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 444444445555555555544444433210 1111 111122223445666667766666665542 223333331 1
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
.......+..+.+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...|...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111233444444444331 122333 2333344556667777777777777777665 44556666777777777
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCH
Q 007613 283 GDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKNW 355 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~ 355 (596)
|++++|...+++...... .|+. ..|..+...+...|++++|..+++....... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 777777777776665432 1222 2344566667777777777777777643321 1111111 1 222233333432
Q ss_pred HHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcC
Q 007613 356 QKALEL---YEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--N------TITYSILLVACERKD 423 (596)
Q Consensus 356 ~~A~~~---~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~------~~t~~~ll~a~~~~g 423 (596)
..+.+. ......... ............++...|+.++|..++..+......+ . .........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 111111100 0111222245667778888888888888876532110 1 111222233456789
Q ss_pred CHHHHHHHHHHHHH
Q 007613 424 DVEVGLMLLSQAKE 437 (596)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (596)
+.++|.+.+.....
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988887765
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.5e-05 Score=73.34 Aligned_cols=292 Identities=12% Similarity=0.046 Sum_probs=209.0
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV-HTYGALIDGCAKAGQVAKAF 182 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~ 182 (596)
.++...|...+-.+... -++.|+.....+...+...|+.++|...|++.... .|+. .......-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444555554444332 35667889999999999999999999999998854 2322 22222223346788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
.+...+.... .-....|-.-.......+++..|+.+-+..+... +.+...+..-...+...+++++|.-.|+....
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 8877776542 2234455555555667788999999988877531 22334444445677889999999999998877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI-DFAGH-AGKVEAAFEILQEAKNQGISVGII 340 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~ 340 (596)
.. +.+..+|.-|+.+|...|++.+|.-.-++..+. +..+..+.+.+. ..|.- ..--++|..+++...+.. |.-..
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~ 439 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTP 439 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHH
Confidence 64 567889999999999999999998877765543 122555555552 23322 223478888888877664 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007613 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (596)
..+.+...+...|..+++..+++..... .||...-+.|...+...+.+.+|++.|....+ +.|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 6677888899999999999999988764 68999999999999999999999999999887 45543
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=1e-05 Score=80.40 Aligned_cols=197 Identities=14% Similarity=0.021 Sum_probs=92.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CC--HHHHHHHHHHH
Q 007613 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT--PEVYTIAINCC 279 (596)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~ 279 (596)
+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++....... ++ ...|..+...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3344555555666666555555421 222334445555555566666666665555443211 11 12334455556
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHh
Q 007613 280 SQTGDWEFACSVYDDMTKKGV-IPDEVFL-S--ALIDFAGHAGKVEAAFEI---LQEAKNQGI-SVGIISYSSLMGACSN 351 (596)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~ 351 (596)
...|++++|..++++...... .+..... + .++.-+...|....+... ......... ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666666543222 1111111 1 222222223322222221 111111100 1111222245666778
Q ss_pred cCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 352 AKNWQKALELYEHMKSIKLK---P-----TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~---~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
.|+.+.|..+++.+...... - .+...-...-++...|+.++|.+++.....
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888887653211 0 111112222345578899999988887654
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=1.9e-05 Score=80.08 Aligned_cols=374 Identities=14% Similarity=0.034 Sum_probs=202.5
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 007613 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTL 133 (596)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l 133 (596)
.|+..++..+.-.....|++..+.+.|++..+ .....|+.+-..+...|.-..|..+++.-....-.| |...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 45555555555556667888888888877542 344567777777777777777777777655432223 23333333
Q ss_pred HHHHH-hcCChhHHHHHHHHHHHC--C--CCCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCH
Q 007613 134 ITTCA-KSGKVDAMFEVFHEMVNA--G--IEPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNVKPDR 197 (596)
Q Consensus 134 i~~~~-~~g~~~~a~~~~~~m~~~--g--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 197 (596)
-..|. +.+.++++++.-.+.... + -......|..+.-+|... ....++++.+++..+.+ +-|.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 33333 234555555555444431 1 022333444444444321 22455666666665543 1122
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-----------
Q 007613 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK----------- 266 (596)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------- 266 (596)
.+...+.--|+..++++.|++...+..+-+. ..+...|..+.-.+...+++.+|+.+.+.....--.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2222233345555666677766666665321 234455555555566666666666666544332100
Q ss_pred --------CCHHHHHHHHHHHHh---------c--------------CCHHHHHHHHHHH-----------------HhC
Q 007613 267 --------GTPEVYTIAINCCSQ---------T--------------GDWEFACSVYDDM-----------------TKK 298 (596)
Q Consensus 267 --------~~~~~~~~li~~~~~---------~--------------g~~~~a~~~~~~m-----------------~~~ 298 (596)
....+...++..+-. . ++..++.+..+.+ ...
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 001111111111110 0 0111111111110 000
Q ss_pred CC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007613 299 GV--IPD------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (596)
Q Consensus 299 ~~--~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (596)
-+ .|+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|.......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld- 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD- 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-
Confidence 01 112 1234444556666777777777766666553 4455666666667777788888888887776543
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 371 KPTVSTMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+.++.+..++...+.+.|+..-|.. ++.++.+.+ +-+...|-.+...+-+.|+.+.|.+.|....+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 2345677778888888887777777 788877743 33567788888888888888888888877665
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=5.5e-05 Score=85.35 Aligned_cols=337 Identities=9% Similarity=-0.048 Sum_probs=208.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--C----CCC--HhhHHHHHHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--I----EPN--VHTYGALIDGCA 173 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~~~--~~~~~~li~~~~ 173 (596)
....|+++.+...++.+.......+..........+...|+++++..++......- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44567777766666554221111122233344555667889999999888765421 0 111 112223334556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHH
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~ 246 (596)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987753111121 23455666677899999999998887642111111 12344556677888
Q ss_pred cCChhHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHH
Q 007613 247 AGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPD--EVFLSALIDFAG 315 (596)
Q Consensus 247 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~li~~~~ 315 (596)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988776542 211 1 22344556667778899999999988865421 1121 234444566777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHHH---H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 007613 316 HAGKVEAAFEILQEAKNQG--ISVGIIS---Y-SSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCD 386 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~~---~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 386 (596)
..|+.+.|...+....... ....... . ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421 1111110 0 1122445568899999999877654211111 1113456677888
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 387 ~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987542 33332 235666677888999999999999998864
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.3e-05 Score=77.93 Aligned_cols=400 Identities=14% Similarity=0.068 Sum_probs=242.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCC-hHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~ 108 (596)
-|..+..|+++.|+..|-+.+... |.+.+.+..-...+.+.|++++|++--.+.. .|+ ...|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 466779999999999999999887 6688877777777888899988877655433 233 45789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH---HHHHHHHHHCC---CCCCHhhHHHHHHHHHh--------
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM---FEVFHEMVNAG---IEPNVHTYGALIDGCAK-------- 174 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~g---~~~~~~~~~~li~~~~~-------- 174 (596)
++|+.-|..-++.. +.+...++-+.+++.......+. -.++..+.... .......|..++..+-+
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999888764 55677788888777221100000 01111111100 00011123333322211
Q ss_pred --cCCHHHHHHHHHH-----HHhC-------CCCC------------C----------HHHHHHHHHHHhccCCHHHHHH
Q 007613 175 --AGQVAKAFGAYGI-----MRSK-------NVKP------------D----------RVVFNALITACGQSGAVDRAFD 218 (596)
Q Consensus 175 --~g~~~~A~~~~~~-----m~~~-------g~~p------------~----------~~~~~~li~~~~~~g~~~~a~~ 218 (596)
-.++..+...+.. +... +..| | ..-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111122111110 0000 0111 1 1124567788888889999999
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------PEVYTIAINCCSQTGDWEFACSVY 292 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~ 292 (596)
-+...... ..+..-++....+|...|...+....-+...+.|...- ...+..+..+|.+.++++.++..|
T Consensus 246 ~y~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 246 HYAKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 99888753 44455556666788888887777766665555442110 122333455777888999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (596)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (596)
.+.+.....|+..+ +....+++........-.+...... ...-...+.+.|++..|.+.|.+++... +-
T Consensus 322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~A~e-~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 322 QKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEKAEE-EREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhHHHH-HHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 98776655544322 2233344444443333322111111 1122556778888888888888888765 55
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007613 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (596)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (596)
|...|..-.-+|.+.|.+..|++-.+...+. .|+. ..|..=..++....+++.|.+.|.+..+ .+|+. .-++
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~---~e~~ 463 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSN---AEAI 463 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchh---HHHH
Confidence 6778888888888888888888877776663 4443 3455555566667788888888888887 34554 3344
Q ss_pred HHHHh
Q 007613 452 GMCSR 456 (596)
Q Consensus 452 ~~~~~ 456 (596)
+.|.+
T Consensus 464 ~~~~r 468 (539)
T KOG0548|consen 464 DGYRR 468 (539)
T ss_pred HHHHH
Confidence 44444
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=3e-07 Score=86.67 Aligned_cols=129 Identities=23% Similarity=0.223 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007613 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYT 273 (596)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (596)
......+..|.+.++++.|.+.++.|.+. ..|. +...+..++.. ...+.+|..+|+++.+. ..+++.+.+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~ln 205 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI----DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLN 205 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHH
Confidence 33444445555555555555555555421 2222 22222222221 12355555555554443 244555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 007613 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEILQEAKNQ 333 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 333 (596)
.+..++...|++++|.+++.+....+.. +..++..++......|+. +.+.+.+.++...
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5555555555555555555555444332 344444455555555554 4444555555543
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=5.6e-05 Score=78.74 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHH
Q 007613 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
..+...|+..|-+..+.+ +.-...+..++.+++...+...|.+.|++.- ..+...+....+.|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 344777888887777776 4444556677888887778888999988764 34566777777888888888877776
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=0.00018 Score=81.26 Aligned_cols=331 Identities=9% Similarity=0.008 Sum_probs=208.4
Q ss_pred hhHHHHHHHHHHhhCCC----CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHhc
Q 007613 73 SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KADC--KLYTTLITTCAKS 140 (596)
Q Consensus 73 ~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~li~~~~~~ 140 (596)
..|+++.+...++.++. .+..........+...|++++|...++...+.-- .+.. .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34566666777766641 1222233344456678999999999987754311 1111 1222333456678
Q ss_pred CChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhccC
Q 007613 141 GKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQSG 211 (596)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~g 211 (596)
|++++|...+++....--..+ ....+.+...+...|++++|...+++.....- .+. ..++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 999999999998776311112 13456666777889999999999988764210 111 234455667788899
Q ss_pred CHHHHHHHHHHHhhCC--CCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhc
Q 007613 212 AVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQT 282 (596)
Q Consensus 212 ~~~~a~~~~~~~~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~ 282 (596)
++++|...+++..... .+.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 9999999887765421 1111 1 22334455566777899999999988775431 111 233455566778899
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 007613 283 GDWEFACSVYDDMTKKGVI-PDEVFL-----SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAK 353 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 353 (596)
|++++|.+.+.+....... .....+ ...+..+...|+.+.|...+........... ...+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 9999999999887542110 011111 1122444567899999988776544221111 112346677888999
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007613 354 NWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (596)
Q Consensus 354 ~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (596)
+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999987642 22222 245666777888999999999999998764
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=0.00028 Score=64.96 Aligned_cols=314 Identities=15% Similarity=0.151 Sum_probs=182.4
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 007613 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTL 133 (596)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l 133 (596)
|.+..-|.-+..-+...|++.+|+..|....+.|+..|.++.+ .|...|+...|+.=+.+..+. +||-.. -..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3444445555666666777888888887777666666665543 567777777777777777764 566332 2222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (596)
...+.+.|.+++|..-|+.+++. .|+..+ ...++.+.-..++-. .....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~--~~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH--EPSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc--CCCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCch
Confidence 34556778888888888877765 332211 111111111111111 112233344556777
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (596)
..|+.....+++. .+-|...+..-..+|...|++..|+.=++...+.. ..+...+.-+-..+...|+.+.++...+
T Consensus 172 ~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777777653 23355556666677777788877777777666654 3445566666677777788777777777
Q ss_pred HHHhCCCCCCHHH-H---HHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHH
Q 007613 294 DMTKKGVIPDEVF-L---SAL---------IDFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNWQK 357 (596)
Q Consensus 294 ~m~~~~~~p~~~~-~---~~l---------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 357 (596)
+.++.+ ||... | ..+ +......+++.++.+-.+...+........ .+..+-.+|...|++.+
T Consensus 248 ECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 776653 34321 1 111 011223455555555555555554221222 23344455666677777
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 358 ALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 358 A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
|++.-.++.+. .|+ +.++.--..+|.-...+++|+.-|+...+
T Consensus 326 AiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 326 AIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 77777776653 333 56666666677777777777777777665
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=0.00035 Score=68.30 Aligned_cols=352 Identities=13% Similarity=0.075 Sum_probs=211.6
Q ss_pred HhhhHHHHHHHHHHhhC---CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHH
Q 007613 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (596)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a 146 (596)
..+.|+++.|+.+|-.. .++|.+.|..-..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 44568999999999753 3678889999999999999999999877766654 565 56899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH------HHHHhC---CCCCCHHHHHHHHHHHhcc-------
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY------GIMRSK---NVKPDRVVFNALITACGQS------- 210 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~---g~~p~~~~~~~li~~~~~~------- 210 (596)
+.-|.+-++.. +.|...++-|..++.... .+.+.| ..+... ........|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988764 456777777777772110 011111 111100 0000111233333322111
Q ss_pred CCHHHHHHHHHHHhh--------CC-----CCCCC------------CH----------HHHHHHHHHHHHcCChhHHHH
Q 007613 211 GAVDRAFDVLAEMNA--------EV-----HPVDP------------DH----------ITIGALMKACANAGQVDRARE 255 (596)
Q Consensus 211 g~~~~a~~~~~~~~~--------~~-----~~~~~------------~~----------~~~~~ll~~~~~~g~~~~a~~ 255 (596)
...+..++....+.. .+ .+..| |. .-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 011111111111100 00 00011 10 113345555566667777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHH
Q 007613 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-------ALIDFAGHAGKVEAAFEILQ 328 (596)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~li~~~~~~g~~~~a~~~~~ 328 (596)
-+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+ .+..+|.+.++++.++..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777776654 34444566667777777777766666665555432 111222 23335555677777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
+.......|+ ...+....+++.+..+...-. .|... ---.=...+.+.|++..|+..+.+++... +-
T Consensus 323 kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 7655543332 223344445555555444332 23221 11122556789999999999999999864 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007613 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (596)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (596)
|...|+...-+|.+.|.+..|+.-.+..++ +.|+..
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~ 426 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFI 426 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHH
Confidence 677899999999999999999999888887 466654
No 94
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=2.9e-08 Score=59.38 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=15.3
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=7.4e-05 Score=67.23 Aligned_cols=313 Identities=14% Similarity=0.105 Sum_probs=178.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHH-HHHHHHhcC
Q 007613 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASSK 106 (596)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~g 106 (596)
.+.-.||+..++.+|++++.--.++. |-+..-...+...+....++..|...++++. .|...-|.. -...+-+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 44567899999999999999888876 5566556666666667778999999998875 344443332 234556778
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 007613 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTC--AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (596)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (596)
.+..|+++...|... |+...-..-+.+. -+.+++..+..+.++.... .+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 899999998877642 3332222222222 2467888888888887643 2444555555556789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT--IGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
|+...+-+---....||.-+ +..+.|+++.|++...++...+..-.|.... -.-.++ -...|+ -.. |..
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgN---t~~----lh~ 237 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGN---TLV----LHQ 237 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccc---hHH----HHH
Confidence 99887654333456776544 5557789999999988887653221221000 000000 000000 000 111
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (596)
.++ ...+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-. -..+++.+...-++.+...+. ....|
T Consensus 238 Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ET 312 (459)
T KOG4340|consen 238 SAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPET 312 (459)
T ss_pred HHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHH
Confidence 111 133444445555666666666666555422 112344444333221 122334444444444444432 33455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
|..++-.|||..-++-|-.++.+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 66666666666666666655543
No 96
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.68 E-value=0.00041 Score=67.82 Aligned_cols=393 Identities=12% Similarity=0.121 Sum_probs=219.9
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007613 50 DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126 (596)
Q Consensus 50 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 126 (596)
+-++.+ |.+...+..+++-+..+ ..++++..++++. +-....|..-|..-...++++....+|.+....- .+
T Consensus 11 ~rie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 334445 77777777777777665 7899999998875 3356689999999999999999999999987653 35
Q ss_pred HHHHHHHHHHHHh-cCChhH----HHHHHHHH-HHCCCCC-CHhhHHHHHHH---------HHhcCCHHHHHHHHHHHHh
Q 007613 127 CKLYTTLITTCAK-SGKVDA----MFEVFHEM-VNAGIEP-NVHTYGALIDG---------CAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 127 ~~~~~~li~~~~~-~g~~~~----a~~~~~~m-~~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~ 190 (596)
...|..-|+--.+ .++... ..+.|+-. .+.|+.+ +-..|+..+.. |..+.+++...++|.++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6666666653332 233333 22334432 3345433 23346665553 3345567778888888875
Q ss_pred CCCCCCHHHHHH------HHHHH-------hccCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHHH
Q 007613 191 KNVKPDRVVFNA------LITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMK 242 (596)
Q Consensus 191 ~g~~p~~~~~~~------li~~~-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~~~ll~ 242 (596)
.-+.-=...|+- =|+-. -+...+..|.++++++..-..|+..+..+ |-.+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 422111112221 11111 12234556666666654322232221111 323332
Q ss_pred HHHHcCChh---------HHHHHHHHH-HhcCCCCCHHHHHHHHHHH-------HhcCC-------HHHHHHHHHHHHhC
Q 007613 243 ACANAGQVD---------RAREVYKMI-HKYNIKGTPEVYTIAINCC-------SQTGD-------WEFACSVYDDMTKK 298 (596)
Q Consensus 243 ~~~~~g~~~---------~a~~~~~~~-~~~~~~~~~~~~~~li~~~-------~~~g~-------~~~a~~~~~~m~~~ 298 (596)
. -+.+-+. ...-.+++. .-.+.. +.+|.-.-..+ ...|+ -+++..++++....
T Consensus 246 w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 246 W-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred H-HhcCCcccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 1 1111111 111112221 111222 23332222222 22222 34555555554432
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 007613 299 GVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TV 374 (596)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~ 374 (596)
-..-+..+|..+...--.. ...+....+++++...-...-..+|..+++.-.+..-+..|+.+|.+..+.+..+ .+
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 2222333333333211111 1245555666666554322224567778888888888899999999998877666 77
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 007613 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCIIG 452 (596)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~ 452 (596)
...++++.-||. ++.+-|.++|+-=.+. ..-+..--...+.-+.+.++-..++.+|++.+..++.|+. .+|..+|+
T Consensus 403 fVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 788888888774 6678899999874432 2223333456777788888888999999999887666654 46777776
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=2.6e-08 Score=59.54 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007613 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (596)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (596)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=1e-06 Score=83.16 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 007613 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGK 319 (596)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 319 (596)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33445555555444321 223444455555555566666666555555432 12 223333333222 224
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHH
Q 007613 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVLS 398 (596)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 398 (596)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.. +.+..+...+|......|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 56666666665443 34555666666666666666666666666655433 23444555555555555555 44555555
Q ss_pred HHHh
Q 007613 399 DMKS 402 (596)
Q Consensus 399 ~m~~ 402 (596)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5554
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.0005 Score=71.95 Aligned_cols=321 Identities=14% Similarity=0.186 Sum_probs=166.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHH
Q 007613 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (596)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (596)
+.++-..+...++-.+-..+-+++++++.-.+. ++.+.....+++-...+. +-....++.+++..-|. -.+...+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHHHH
Confidence 344555667777888999999999988875542 334444444333222221 11222223333221111 1122334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 007613 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (596)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (596)
..++-+++|..+|... ..+....+.|+. .-+.++.|.+.-++.. .+..|+.+..+-.+.|.+.+|+
T Consensus 1059 i~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence 4556667777777654 234444555554 2345566666555443 3445777777777777777776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
+-|-+.- |+..|..+++...+.|.+++-.+.+.-.+++ .-+|. .=+.|+-+|++.+++.+.+++..
T Consensus 1125 eSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~~--id~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1125 ESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREPY--IDSELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred HHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCcc--chHHHHHHHHHhchHHHHHHHhc----
Confidence 6654332 5566777777777777777777766555443 22333 23456667777776665554432
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (596)
-|+..-...+.+-|...|.++.|.-+|... ..|..+...+...|++..|.+.-++. .+..||
T Consensus 1191 ---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1191 ---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred ---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 334444455555666666666665554432 23455555555555555554433321 134455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007613 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (596)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (596)
-.+-.+|...+.+.-| +|...++--...-..-++.-|-..|-+++.+.+++.
T Consensus 1253 K~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5555555444433322 222222222233344455555555555555555544
No 100
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=0.00028 Score=71.93 Aligned_cols=361 Identities=12% Similarity=0.026 Sum_probs=237.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--C--C-ChHhHHHHHHHHHh-cCCh
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--N--P-TLSTFNMLMSVCAS-SKDS 108 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~li~~~~~-~g~~ 108 (596)
|.++|+++.+.+.|++...--. .....++. +...+...|.-..|..+++.-. . | |...+-..-+.|.+ .+..
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~-~~~e~w~~-~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSF-GEHERWYQ-LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhh-hhHHHHHH-HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh
Confidence 4489999999999998876432 22333332 2223334455677888877532 2 3 34444444444544 3677
Q ss_pred HHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEA--GL--KADCKLYTTLITTCAKS-----------GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (596)
Q Consensus 109 ~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (596)
++++....+.... +. ......|..+.-+|... ....++++.+++..+.+ +-|..+.-.+.--|+
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYA 489 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 7777777666651 11 22345566666565532 22356788888888765 223333333444577
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC------------------CCCHH
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV------------------DPDHI 235 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------------------~~~~~ 235 (596)
..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+....+. |. .....
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHH
Confidence 888999999999998887556688889888888888899999888887765531 11 01123
Q ss_pred HHHHHHHHHH------H---c--------------CChhHHHHHHHHHH--------hcC---------CCC--C-----
Q 007613 236 TIGALMKACA------N---A--------------GQVDRAREVYKMIH--------KYN---------IKG--T----- 268 (596)
Q Consensus 236 ~~~~ll~~~~------~---~--------------g~~~~a~~~~~~~~--------~~~---------~~~--~----- 268 (596)
|+..++..+- . . ++..++......+. ..+ ..| +
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 4444443332 0 0 11222222221111 111 111 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007613 269 -PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (596)
Q Consensus 269 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (596)
...|......+.+.+..++|...+.+...... .....|......+...|...+|.+.|......+ +.++....++..
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~ 726 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 23466777888888999999877777765532 255667777777888999999999999888775 556778899999
Q ss_pred HHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 348 ACSNAKNWQKALE--LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 348 ~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
++.+.|+..-|.. ++..+.+.+ +.+...|-.+...+-+.|+.++|.+.|....+
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999999887777 999999876 56789999999999999999999999988654
No 101
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=6.3e-05 Score=72.04 Aligned_cols=211 Identities=11% Similarity=0.011 Sum_probs=130.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
+-..+...++.++|+.+.+.+++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3334455667778888888777653 334456666656666666 5677888887777654 445556766655555555
Q ss_pred CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc---CCh-
Q 007613 177 QV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQV- 250 (596)
Q Consensus 177 ~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~- 250 (596)
+. ++++..++++.+.. +-|..+|+...-++.+.|+++++++.++++++.. ..|...|+.....+.+. |..
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhcccccccc
Confidence 53 56677777777654 3456677777777777777888888888777541 23344555544444433 222
Q ss_pred ---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 251 ---DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (596)
Q Consensus 251 ---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (596)
++......++.... +.+..+|+-+...+... ++..+|.+.+.+....++. +...+..|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 34555555665554 55667777777777663 3345577777776654433 55666777776664
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=3.3e-05 Score=83.09 Aligned_cols=227 Identities=12% Similarity=0.043 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHH
Q 007613 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (596)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (596)
+...|-..|.-....++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+.. ..-.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 4567777888888888888888888888753 221 13467777777777777788888888887753 2245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 349 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 349 (596)
+|..|...|.+.+.+++|.++++.|.++-- -....|...+..+.+..+-+.|..++.++.+.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788888889999999999999998887532 35677888888888888888888888887765211 1234455556666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (596)
.+.|+.+.++.+|+.....- +.....|+..|+.-.++|+.+.+..+|++....++.|-. ..|.-.|..-...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 78899999999998887643 445678999999999999999999999998887777653 345555555455555443
Q ss_pred HH
Q 007613 428 GL 429 (596)
Q Consensus 428 a~ 429 (596)
+.
T Consensus 1690 vE 1691 (1710)
T KOG1070|consen 1690 VE 1691 (1710)
T ss_pred HH
Confidence 33
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=3.7e-05 Score=82.78 Aligned_cols=225 Identities=11% Similarity=0.155 Sum_probs=160.9
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (596)
....|-..+.-..+.++.+.|++++++.... +.+ -...|.++++.-..-|.-+...++|++..+.. -.-..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3457888888888888899999988887753 222 13467777777777777778888888888752 234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 007613 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (596)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (596)
..|...|.+.+.+++|-++|+.|.++ +.-....|...+..+.+..+-+.|..++.+.+..- +-.-......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHh
Confidence 88888888999999999999888865 22456788888888888888888888888887631 11112334444555667
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007613 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVE 321 (596)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 321 (596)
+.|+.++++.+|+...... +.-...|+.+|+.-.+.|+.+.+..+|++....++.|-. +.|...+..=-..|+-+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 7888888888888887765 445678888898888889988999999988888776532 34444444333444433
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.57 E-value=0.00018 Score=72.44 Aligned_cols=195 Identities=15% Similarity=0.184 Sum_probs=131.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007613 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (596)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (596)
.+.+......+.+|+.+++.+..+. .-..-|..+.+.|+..|+++.|.++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3445556677888888888777552 233456777788888888888888886542 35567778888888
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (596)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (596)
++.|.++-.+.. +.+.....|.+-..-.-+.|++.+|.+++-.+.. |+ ..|.+|-+.|..++.+++.
T Consensus 807 w~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 807 WEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHH
Confidence 888888876654 3344455566666666777888888877755432 22 3467788888888887776
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (596)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (596)
.+-.... -..|...+..-+...|++..|..-|-+.. -|.+-+++|-.++.+++|.++-+
T Consensus 874 ~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 6532211 22455566677777888888877664432 35667778888888888877654
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=7.6e-06 Score=82.35 Aligned_cols=214 Identities=14% Similarity=0.062 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
-..+...+.+.|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+..++ +||...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3445556666666666666666654 2555666666666666666666666553 5666666666666655
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.++++.|.
T Consensus 470 ~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 55566666666553321 01111111223456666666666555544 444556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
+.|.......+. +...|+.+-.+|.+.++-.+|...+++..+.+ .-+...|-..+....+.|.+++|.+.+.++.
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 666665554322 34456666666666666666666666666655 3344455555555566666666666666555
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=2e-05 Score=77.45 Aligned_cols=222 Identities=13% Similarity=0.107 Sum_probs=103.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007613 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (596)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (596)
.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 45566666666666655543 3455666666666666666666666666666542 223455555555666666666666
Q ss_pred HHHHHHhhCCCCCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 218 DVLAEMNAEVHPVD------PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (596)
Q Consensus 218 ~~~~~~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 290 (596)
..++.-+....... ++...-.. +.......+....++|-.+ ...+...|+.+...|.-.|.-.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 66655543210000 00000000 0000111112222233222 222223445555555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 291 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
.|+..+...+. |..+|+.|...++...+..+|+..|.+.++.... =+.+...|.-.|...|.+++|.+.|-..
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 55555544332 4445555555555555555555555555543211 1222333444455555555555544433
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=8e-06 Score=82.19 Aligned_cols=213 Identities=12% Similarity=0.039 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 007613 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (596)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (596)
..+...+...|....|..+|+++. .|..+|.+|...|+..+|..+..+..++ +||...|..+.+...
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhcc
Confidence 444555556666666666665543 3555555666666666666655554432 455555555555544
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (596)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (596)
...-+++|.++++....+ +-..+.......++++++.+.|+.-.+...- -..+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 444455555555544322 1111112222345666666666554443221 33455555555555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
.|....... +.+...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|...+....+-|.+++|++.+.++.
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 665555442 3345556666666666666666666666666544 3334445555555556666666666665543
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=0.0016 Score=66.95 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=50.0
Q ss_pred HHHHHHcCChhHHHHHHHH--------HH--hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------
Q 007613 241 MKACANAGQVDRAREVYKM--------IH--KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK------------- 297 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~--------~~--~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------- 297 (596)
+..|-+.|.+.+|+++--. +. +.+...|+...+.-.+.++...++++|..++-...+
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777664211 11 223334566666666777777777766665532211
Q ss_pred -------------CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 298 -------------KGVIPDE----VFLSALIDFAGHAGKVEAAFEILQE 329 (596)
Q Consensus 298 -------------~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 329 (596)
++-.|+. ..+..+...|.+.|.+..|-+-|.+
T Consensus 1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 1112333 3455666778888888877666554
No 109
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=0.00015 Score=69.54 Aligned_cols=204 Identities=10% Similarity=0.077 Sum_probs=93.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh--h
Q 007613 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV--D 251 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--~ 251 (596)
.++.++|+.+.++++... +-+..+|+..-.++...| ++++++..++++.... +.+..+|+.-.-.+.+.|+. +
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHHHHHHHHcCchhhH
Confidence 344445555555544431 112233333333333333 3455555555544321 11222333322223333331 3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 007613 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA---GK----VEAAF 324 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~----~~~a~ 324 (596)
++..+++++.+.+ +.+..+|+...-.+...|+++++++.++++.+.++. |...|+.....+.+. |. .++..
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 4455555555554 445555665555555666666666666666655544 444444444333332 11 13444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007613 325 EILQEAKNQGISVGIISYSSLMGACSNA----KNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (596)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (596)
+....++... +-|...|+.+...+... +...+|...+.+..+.+ ..+......|++.|+.
T Consensus 204 ~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 5554555443 44555666665555552 23344555555554432 2344455555555553
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.0015 Score=64.09 Aligned_cols=406 Identities=11% Similarity=0.130 Sum_probs=244.3
Q ss_pred hhHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHHHHH
Q 007613 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (596)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (596)
+.++.+|+.|+ +...++++...++++...- |....+....++.-...++++...++|.+.. .-+...|...|.
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34667899998 4569999999999998765 6565555555666666788999999998643 346777887776
Q ss_pred HHHhc-CChHHH----HHHHHHH-HHcCCCCC-HHHHHHHHHHH---------HhcCChhHHHHHHHHHHHCCCCCCHhh
Q 007613 101 VCASS-KDSEGA----FQVLRLV-QEAGLKAD-CKLYTTLITTC---------AKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (596)
Q Consensus 101 ~~~~~-g~~~~A----~~~~~~m-~~~g~~~~-~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (596)
---+. ++...+ .+.|+.. .+.|+.+- -..|+..+..+ ....+++...++|.++....+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 44332 333332 2233333 33454332 23455555433 344566778888888876432211222
Q ss_pred HHH------HHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHhccC---
Q 007613 165 YGA------LIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG--- 211 (596)
Q Consensus 165 ~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g--- 211 (596)
|+- =|+.. -+...+..|.++++++.. .|+..+..+ |-.+|.-=-..+
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 221 11111 123456777788777653 343222222 433443221111
Q ss_pred ---CH--HHHHHHHHHHhhCCCCCCCCHHH-HHHH----HHHHHHcCCh-------hHHHHHHHHHHhcCCCCCHHHHHH
Q 007613 212 ---AV--DRAFDVLAEMNAEVHPVDPDHIT-IGAL----MKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYTI 274 (596)
Q Consensus 212 ---~~--~~a~~~~~~~~~~~~~~~~~~~~-~~~l----l~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 274 (596)
.. ....-.+++...- .+..|+..- +... -+.+...|+. +++..+++.....-...+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111222222221 133444321 1111 1234444544 445555555444332333344444
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007613 275 AINCCSQTG---DWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (596)
Q Consensus 275 li~~~~~~g---~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 349 (596)
+.+.--..- ..+.....+.+++.. ...| ..+|...+..-.+..-++.|..+|.++.+.+..+ ++.+.++++.-|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 443322222 255666666666543 2333 3567778888888888999999999999988766 788899999877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (596)
| .++.+-|.++|+-=.+. ...+..--+..++-+...++-..|..+|++....++.|+. ..|..+|.--+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 7 67889999999965443 1234445567778888889999999999999988777764 679999999999999999
Q ss_pred HHHHHHHHHH
Q 007613 428 GLMLLSQAKE 437 (596)
Q Consensus 428 a~~~~~~~~~ 437 (596)
+.++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=3.1e-05 Score=76.07 Aligned_cols=221 Identities=14% Similarity=0.086 Sum_probs=171.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (596)
-+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+.+..+.. +-|....-+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3678899999999999998875 5578899999999999999999999999999875 5567888888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 007613 181 AFGAYGIMRSKNVKPDRVVFNALI-----------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (596)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (596)
|+..++..+.... . |..+. ..+.....+....++|-++... .+..+|..+...|.-.|--.|+
T Consensus 372 Al~~L~~Wi~~~p--~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~-~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 372 ALKMLDKWIRNKP--K---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ-LPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHhCc--c---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh-CCCCCChhHHhhhHHHHhcchH
Confidence 9999998865421 1 10010 1122223344556666666554 2434566677778888899999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQ 328 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 328 (596)
+++|...|+...... +.|..+||.|...+....+..+|+..|++.++.. |+ +.....|.-.|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999876 6788899999999999999999999999998863 43 2344556668899999999998887
Q ss_pred HHHH
Q 007613 329 EAKN 332 (596)
Q Consensus 329 ~~~~ 332 (596)
.++.
T Consensus 523 ~AL~ 526 (579)
T KOG1125|consen 523 EALS 526 (579)
T ss_pred HHHH
Confidence 6543
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.0014 Score=68.73 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=154.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007613 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (596)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 218 (596)
..+-+++|..+|++. ..+....+.||. .-+..++|.+.-++.- .+..|+.+..+-.+.|.+.+|.+
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 344445555555443 233444444443 2344455544433322 24567777777777788777777
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
-|-+. .|...|.-++....+.|.+++-.+.+....+....| .+=+.||-+|++.++..+..++..
T Consensus 1126 Syika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~----- 1190 (1666)
T KOG0985|consen 1126 SYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA----- 1190 (1666)
T ss_pred HHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc-----
Confidence 66432 244567777888888888888888777766655444 344577778888877766544321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007613 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (596)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (596)
-||......+.+-|...|.++.|.-++.. +.-|..|...+...|+++.|...-++. .+..+|.
T Consensus 1191 --gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 --GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred --CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence 35666677777777778888777777653 445677777788888888887665544 3667888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (596)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (596)
.+-.+|...+.+.-| +|....+.....-..-++.-|...|-+++...+++..
T Consensus 1254 ~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 888888776655433 3333333344455666777777777777777666544
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=4.3e-05 Score=67.90 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (596)
..+..+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.|++++|..-|.+..+.. .-+....|.|.-.|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHH
Confidence 33334444444455555555444444332 4444444444444445555555444444444432 122333444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (596)
-.|+.+.|..++......+ .-|...-..+.......|++++|..+.
T Consensus 180 L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 4444555544444444432 113333334444444444444444443
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.46 E-value=0.00038 Score=70.31 Aligned_cols=311 Identities=18% Similarity=0.186 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007613 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (596)
+.+++|...|-.- |. -...|..|....++++|+.+-+. .|.+.-...-.+.++++...|+-+.|-++-.
T Consensus 545 kkfk~ae~ifleq---n~--te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~--- 613 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQ---NA--TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKE--- 613 (1636)
T ss_pred hhhhHHHHHHHhc---cc--HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhcc---
Confidence 4566666665321 11 12345556666677777766432 2333223334445555555565555544311
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC--------
Q 007613 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------- 226 (596)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------- 226 (596)
.+-. --+-|+.|.+.|.+..|.+.-..=.. +..|......+..++.+..-+++|-.+|+.+..-
T Consensus 614 -----sdgd-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fk 685 (1636)
T KOG3616|consen 614 -----SDGD-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFK 685 (1636)
T ss_pred -----ccCc-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHH
Confidence 1111 12456667777777666554321111 1224444444444555444455555555443210
Q ss_pred ------------CCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 227 ------------VHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 227 ------------~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (596)
...++..+++. .....-+...|+++.|...|-+.. ..-..|.+-.....|.+|+.+++
T Consensus 686 kgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 686 KGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred cccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHH
Confidence 00000001000 001111222333333333332211 11122344455677788888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (596)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (596)
.++..... ..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|++++|.++-.+.. |....
T Consensus 757 niqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t 823 (1636)
T KOG3616|consen 757 NIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEAT 823 (1636)
T ss_pred Hhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhH
Confidence 77766432 234667777888888888888888642 245567788888888888888766654 22334
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (596)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (596)
...|-+-..-+-++|++.+|.+++-... .|+. .|..|-+.|..+..+++.++-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 5556666666778888888887775543 3443 255677788877777766543
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=3.1e-05 Score=71.83 Aligned_cols=185 Identities=11% Similarity=0.015 Sum_probs=127.8
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-Hh-
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VH- 163 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~- 163 (596)
+.....+..+...+.+.|++++|...++.+.... +.+. .++..+..++.+.|++++|...++++.+.. |+ ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 3456677778888889999999999999987753 2222 466778888999999999999999988753 32 22
Q ss_pred --hHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC
Q 007613 164 --TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (596)
Q Consensus 164 --~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 232 (596)
++..+...+.+. |+.+.|.+.|+++... .|+. ..+..+..... .. ....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH--------
Confidence 455555556554 6788889998888866 3432 22322211100 00 0000
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+...
T Consensus 167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455678899999999999999887632 234678889999999999999999998888765
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=6.3e-05 Score=66.98 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
...|..+...|...|++++|...|++..
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al 100 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQAL 100 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=6.7e-05 Score=69.55 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V---HTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
...+..+...+.+.|++++|...|+++... .|+ . .++..+...+.+.|++++|...|+++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444555555555666666666666655543 222 1 24455555555566666666666665543
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00023 Score=64.14 Aligned_cols=314 Identities=13% Similarity=0.086 Sum_probs=149.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH-HHHHHH
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCA 173 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~ 173 (596)
+++.+..+.+..++..|++++..-.++. +.+....+.|..+|-...++..|-.-++++... .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444455556666666665555543 234555555666666666666666666665543 333333321 122334
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChh
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (596)
+.+.+..|+++...|... |+...-..-+.+ ....+++..+..++++... +.+..+.+.......+.|+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-----en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-----ENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-----CCccchhccchheeeccccHH
Confidence 555666666666555432 121111111111 1234555555555555432 122223333333344556666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHH
Q 007613 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA-----LIDFAGHAGKVEAAFEI 326 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~ 326 (596)
.|.+-|+...+-+--.....||.-+. ..+.|+++.|++...++.++|++-.+. ++. .+++ ...|+ -..+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgN---t~~l 235 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGN---TLVL 235 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccc---hHHH
Confidence 66666655554432223344444333 334455666666666666655541110 000 0000 00000 0000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007613 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (596)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (596)
+... -+..+|.-...+.+.|+.+.|.+-+-.|.-. .-..|++|...+.-.- ..+++.+..+-+.-+....
T Consensus 236 h~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n- 306 (459)
T KOG4340|consen 236 HQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN- 306 (459)
T ss_pred HHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-
Confidence 0000 0112333334456788888888888777521 1234556654433222 2344555555455555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 406 CPNTITYSILLVACERKDDVEVGLMLLSQ 434 (596)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (596)
+-...||..++-.||+..-++.|-.++.+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 23457888888889988888888777643
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=9.6e-05 Score=65.82 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--HHHHHH
Q 007613 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFE 325 (596)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a~~ 325 (596)
+.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444443 444445555555555555555555555554444322 33344444433 233343 245555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
++++..+.+ +.+..++..+...+.+.|++++|...|+++.+
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555544443 22344444444444455555555555554444
No 120
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.0045 Score=63.80 Aligned_cols=286 Identities=17% Similarity=0.176 Sum_probs=149.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC-ChHhHHHHHHHHHhcCChHHHHHH
Q 007613 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 36 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
+..|-+++|..+|.+..+-+ ++-.++...|.+++|+++-+.--.- =..||.....-+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 35566666666666665544 2223344556666666654321110 012333333334445555555555
Q ss_pred HHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 007613 115 LRLV----------QEAG---------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (596)
Q Consensus 115 ~~~m----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (596)
|++. .... -..|...|.-...-+-..|+.+.|+.+|..... |-++++..|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 5421 1110 012333344444444455666666666655442 55566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH----------
Q 007613 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA---------- 245 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~---------- 245 (596)
|+.++|-++-++-. |......|.+.|-..|++.+|..+|.+... +...|..|-
T Consensus 952 Gk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA-----------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred cCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHhcCHHHHHHH
Confidence 77777766644432 455666677788888888888877776542 222222221
Q ss_pred ---Hc--CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHHHHHHH
Q 007613 246 ---NA--GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD--------MTKK--GVIPDEVFLSAL 310 (596)
Q Consensus 246 ---~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~~--~~~p~~~~~~~l 310 (596)
.. .+.-.|-++|++.. .-....+..|-+.|.+.+|+++--+ +... ....|+...+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 11 12223333443321 1122334557777888777765321 1222 233466777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----------CCC----------------CCCH----HHHHHHHHHHHhcCCHHHHHH
Q 007613 311 IDFAGHAGKVEAAFEILQEAKN----------QGI----------------SVGI----ISYSSLMGACSNAKNWQKALE 360 (596)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~----------~~~----------------~~~~----~~~~~li~~~~~~g~~~~A~~ 360 (596)
.+.++...++++|..++...++ +|+ .|+. .....+.+.|.+.|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 7777888888888777665432 111 1222 234556667777888777777
Q ss_pred HHHHH
Q 007613 361 LYEHM 365 (596)
Q Consensus 361 ~~~~m 365 (596)
-|.+.
T Consensus 1167 KfTQA 1171 (1416)
T KOG3617|consen 1167 KFTQA 1171 (1416)
T ss_pred HHhhh
Confidence 66554
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.36 E-value=0.00015 Score=64.61 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=76.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
+-..+...|+-+....+...... ....|.......+....+.|++..|...|.+..... ++|...|+.+.-+|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444555444444444321 112233333445555555555555555555555544 45555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (596)
|+++.|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..|.......|+++.|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555555544322 33344444444555555555555555554443 224444444555555555555555544
Q ss_pred HH
Q 007613 363 EH 364 (596)
Q Consensus 363 ~~ 364 (596)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 33
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.00038 Score=74.58 Aligned_cols=147 Identities=12% Similarity=0.011 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhc
Q 007613 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (596)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (596)
..-....+.+.+.+++++|+++.+...+.. |....++...+.++.+.++.+++..+ .++......
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 333334444448999999999999888776 55555554444455555554443322 444444455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
.++.....+...|... .-+...+..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 5554444455555543 3345577788888888888888888888888876 66788888888888888 888888888
Q ss_pred HHHHhC
Q 007613 186 GIMRSK 191 (596)
Q Consensus 186 ~~m~~~ 191 (596)
.+....
T Consensus 173 ~KAV~~ 178 (906)
T PRK14720 173 KKAIYR 178 (906)
T ss_pred HHHHHH
Confidence 777643
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=3.4e-05 Score=64.86 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (596)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445555666667777777766666554 4456666666666666777777777776666553 4456666666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007613 175 AGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (596)
.|++++|+..|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 67777777776666654
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00068 Score=60.44 Aligned_cols=107 Identities=23% Similarity=0.226 Sum_probs=51.0
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
+.+..+++-|.+.+++|... .+..|.+.|..++.+ .+.+.+|.-+|+++.+.- +|++.+.+-...++...
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHh
Confidence 34444555555555555431 223333434333332 233555555555554432 45555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (596)
|++++|..+++..+.+... +..+...++-.....|..
T Consensus 221 ~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred cCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 5555555555555554433 444444444444444443
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.0027 Score=61.83 Aligned_cols=242 Identities=14% Similarity=0.099 Sum_probs=162.4
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHH---cCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhCC------CCCh
Q 007613 24 DVSEQLHSYNRLIRQGR-ISECIDLLEDMER---KGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVP------NPTL 92 (596)
Q Consensus 24 ~~~~~~~~~~~l~~~g~-~~~A~~~~~~m~~---~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~ 92 (596)
-.+.+-.-+..|.+.|. ..-..+.|+++.. .+.-++.. ..|- ....++.++...-++++ .|+.
T Consensus 201 E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP------lp~~RIa~lr~ra~q~p~~~~~d~~~~ 274 (484)
T COG4783 201 EQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP------LPEERIADLRNRAEQSPPYNKLDSPDF 274 (484)
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC------CchhHHHHHHHHHHhCCCCCCCCCccH
Confidence 35677888888999984 4555778888874 22222221 1121 12234555555555555 3455
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
..+...+.+......-..+..++....+. .-...-|..-+. +...|++++|+..++.++..- +.|+..+......+
T Consensus 275 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~ 350 (484)
T COG4783 275 QLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDIL 350 (484)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 55556665544333333333333222221 112233444443 447889999999999988763 55677777888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChh
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (596)
.+.++..+|.+.++++... .|+ ...+-.+..++.+.|+..+|.+++++.... .+.|...|..|..+|...|+..
T Consensus 351 ~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 351 LEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999977 566 556667889999999999999999988764 3556778999999999999887
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
++..-.. .+|...|+++.|...+....+.
T Consensus 426 ~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 426 EALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 7765433 4566778999999888887765
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.0048 Score=60.10 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (596)
.+.-..-.+...|++++|+..++.+...-+. |...+....+.+.+.++.++|.+.++.+.... +......-.+..+|.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHH
Confidence 3333444456678888888888887765332 55666666777888888888888888887764 222556667777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430 (596)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (596)
+.|+..+|..+++...... +-|...|..|..+|...|+..+|.....+ ++...|+++.|..
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHH
Confidence 8888888888887776543 55677888888888888887777655443 3456788888888
Q ss_pred HHHHHHHcC--CCCCHHHHHHHHHH
Q 007613 431 LLSQAKEDG--VIPNLVMFKCIIGM 453 (596)
Q Consensus 431 ~~~~~~~~g--~~p~~~~~~~li~~ 453 (596)
.+....+.. ..|+..-+...|+.
T Consensus 447 ~l~~A~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 447 FLMRASQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHH
Confidence 777776541 23444444455544
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.26 E-value=6.9e-05 Score=62.99 Aligned_cols=86 Identities=12% Similarity=0.011 Sum_probs=33.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007613 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (596)
+...|++++|...|..+.... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 333344444444444333332 2233333334444444444444444444443322 22333333333344444444444
Q ss_pred HHHHHHHH
Q 007613 394 MEVLSDMK 401 (596)
Q Consensus 394 ~~~~~~m~ 401 (596)
...|+...
T Consensus 112 i~~~~~Al 119 (144)
T PRK15359 112 REAFQTAI 119 (144)
T ss_pred HHHHHHHH
Confidence 44444433
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00064 Score=72.08 Aligned_cols=183 Identities=11% Similarity=0.062 Sum_probs=138.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (596)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (596)
...+...+-.|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 45567788888899999999999999999998875 556778888999999999999999999999887654 6667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007613 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (596)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (596)
+..++.+.|++++|..+|+++...+ +.+..++.++...+-+.|+.++|...|+...+.. .+-...|+..+. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 8888899999999999999999854 4557888899999999999999999999988653 345566665543 3
Q ss_pred hhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc
Q 007613 390 LPKTMEVLSDMKSLG----LCPNTITYSILLVACERK 422 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~ 422 (596)
...-..+++++.-.+ ...........|.-+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 344456666664433 222333444555444443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.19 E-value=0.00091 Score=70.94 Aligned_cols=235 Identities=10% Similarity=0.095 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 127 CKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (596)
+.....+=.+.+..|..++| .+++.+.. .++..........+++--....... ...+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence 33344444455666766665 45555554 2333334434444444333333332 3556888989999
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007613 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (596)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (596)
...+.|.+++|..+++...+ +.|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|+
T Consensus 95 i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999985 4666 4566777889999999999999999999987 7778889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
+++|..+|++....+.. +..++..+..++-..|+.++|...|+...+.. .+...-|+.++ +++..-...++.
T Consensus 170 ~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~ 241 (694)
T PRK15179 170 SEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRR 241 (694)
T ss_pred hHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHH
Confidence 99999999999985443 57889999999999999999999999998764 34455555544 334444556666
Q ss_pred HHhC----CCCCCHHHHHHHHHHHHcC
Q 007613 365 MKSI----KLKPTVSTMNALITALCDG 387 (596)
Q Consensus 365 m~~~----~~~~~~~~~~~li~~~~~~ 387 (596)
+.-. |....+.+...+|.-|.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 242 LGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cCcccccCCCceeeeeHHHHHHHHhhc
Confidence 5432 2223344556666666543
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.0021 Score=69.04 Aligned_cols=239 Identities=8% Similarity=0.034 Sum_probs=135.2
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (596)
+.+...|..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 456677888888888888899998888866654 3442 3333333456666665555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (596)
++.......++.-+..+...|...+ -+...+..+..+|-+.|+.+++..+++++.+-. +-|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 2233333334433333333444332 234466677777778888888888888777541 33466677777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
++++|++++.+.... |...+++..+.++|.++....+. |...+..++
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 777777777766553 44555666677777766665322 221222221
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
+.+... +..--..++-.+-..|-+.++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111111 111123344445555666666666666666666543 234444555555554
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=0.00012 Score=61.07 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007613 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (596)
.+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...+++..+.+ +.+...+..+...|...|++++
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~ 103 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPES 103 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHH
Confidence 3333344444444444433332 2233333334444444444444444444433322 2223333333334444444444
Q ss_pred HHHHHHHHH
Q 007613 393 TMEVLSDMK 401 (596)
Q Consensus 393 A~~~~~~m~ 401 (596)
|+..|++..
T Consensus 104 A~~~~~~al 112 (135)
T TIGR02552 104 ALKALDLAI 112 (135)
T ss_pred HHHHHHHHH
Confidence 444444333
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0051 Score=55.05 Aligned_cols=246 Identities=13% Similarity=0.057 Sum_probs=138.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhH
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (596)
.-.|.+..++..-...... +-+...-.-+-++|...|.+..... +... +-.|.......+......-++.+.
T Consensus 19 fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~---~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE---GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc---ccCChHHHHHHHHHHhhCcchhHH
Confidence 3346666665554443332 1233333345566666666543322 2211 112333332222222222333332
Q ss_pred H-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 253 A-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 253 a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
- ..+.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+.+-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2344444444434443444444566788888888888776521 22233333344566777888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 332 NQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
+-. +..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.|.+..++...|++++|..++++..... .-
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 653 55666656655543 45678888888888764 36888888888888888888888888888887753 33
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 007613 408 NTITYSILLVACERKDDV-EVGLMLLSQAKE 437 (596)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~-~~a~~~~~~~~~ 437 (596)
++.|...++-.-...|.. +...+.+.+++.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 566666555555555554 334455566655
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=3.8e-06 Score=51.07 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (596)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.021 Score=59.88 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQ---KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 342 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
-+.|++.+.+.++.. +|.-+++.-.... +.|..+--.+|+.|+-.|-+..|.++|..|.-..+.-|...|.. ..-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHH
Confidence 356667777777654 3333444333322 23444445567777777888888888777765555555544433 233
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007613 419 CERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~ 436 (596)
+...|++..+...++...
T Consensus 517 ~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHL 534 (932)
T ss_pred HHhcccchhHHHHHHHHH
Confidence 445556666655555443
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=5.5e-06 Score=50.33 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (596)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (596)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=0.00021 Score=59.63 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
...+...+...|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|...|++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444444445555555555555554432 3344445555555555555555555555544432 2234444444455555
Q ss_pred cCCHHHHHHHHHHHh
Q 007613 210 SGAVDRAFDVLAEMN 224 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~ 224 (596)
.|++++|.+.|+...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555544
No 137
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.0034 Score=63.39 Aligned_cols=373 Identities=12% Similarity=0.104 Sum_probs=200.7
Q ss_pred HHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------HHhcCChhHH
Q 007613 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT----------CAKSGKVDAM 146 (596)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----------~~~~g~~~~a 146 (596)
+++|.++.+. .|.+..|..+.......-.++-|...|-+... -+.......|-.. -+--|++++|
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 4566665554 45566788777766666667777776654432 1111111111111 1224788888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
.++|-++-++. .-|..+.+.|++-.+.++++.--.. .-..-...|+.+...++....+++|.+.+..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887776542 4566777888888877776542111 0011245788888888888888888888865421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007613 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (596)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (596)
....+.++.+..++++-+.+-..+ +.+....-.+..++...|.-++|.+.|-+-- . |
T Consensus 825 -----------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p--- 881 (1189)
T KOG2041|consen 825 -----------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P--- 881 (1189)
T ss_pred -----------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c---
Confidence 123456666666666655554443 3344566777888888888888877664321 1 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 007613 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------------YSSLMGACSNAKNWQKALELYEHMKS---- 367 (596)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~m~~---- 367 (596)
...+..|...+++.+|.++-+...- |.+.+ ..--|..+.+.|+.-+|.+++.+|.+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~ 955 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQE 955 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence 2344566677777777666543211 11111 11234566777877777777777764
Q ss_pred CCCCCCHH----HHHH-HHHHH----------HcCCChhHHHHHHHHHHhC-------CCCCCHHH--HHHHHHHHHhcC
Q 007613 368 IKLKPTVS----TMNA-LITAL----------CDGDQLPKTMEVLSDMKSL-------GLCPNTIT--YSILLVACERKD 423 (596)
Q Consensus 368 ~~~~~~~~----~~~~-li~~~----------~~~g~~~~A~~~~~~m~~~-------g~~p~~~t--~~~ll~a~~~~g 423 (596)
.+.++-.. ...+ |+.-+ -++|..++|..+++.-... +.---... |..|..--...|
T Consensus 956 K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen 956 KYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 22222111 1111 11111 1467777887766553211 01111223 334444455678
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHH-HHH-hhHHHHHHhhhhhhhccCCCccchhhhHHHHHHHHHH
Q 007613 424 DVEVGLMLLSQAKED-GVIPNLVMFKCIIG-MCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492 (596)
Q Consensus 424 ~~~~a~~~~~~~~~~-g~~p~~~~~~~li~-~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 492 (596)
.++.|.+.--.+.+. .+-|...+|+.|-- +|+ |.+.-|-.-.-.+..|+.........+..+|+++|.+
T Consensus 1036 ~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iFsk 1107 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIFSK 1107 (1189)
T ss_pred hHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHhcc
Confidence 888887765555543 45666667764432 222 2233332222222233332222233455678888864
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0062 Score=54.13 Aligned_cols=186 Identities=12% Similarity=0.058 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh
Q 007613 176 GQVAKAFGAYGIMRS---KN-VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (596)
Q Consensus 176 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (596)
.+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|..+++++... ++.+..+-..-...+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~---fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR---FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHhhch
Confidence 345556666555542 22 3344332 334445555666667777777666553 211111111111223345666
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (596)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (596)
++|.++++.+.+.+ +.|.+++-.-+...-..|+--+|++-+....+.-. .|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 66666666666655 44555555555555555555566665555555422 25566666666666666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 007613 331 KNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKS 367 (596)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 367 (596)
.-.. |.++..+..+.+.+...| +.+.|++.|.+..+
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5443 334444444444433332 23445555555554
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.2e-05 Score=48.50 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (596)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (596)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=9.3e-06 Score=48.91 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444443
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.97 E-value=0.038 Score=58.63 Aligned_cols=183 Identities=9% Similarity=0.044 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007613 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (596)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (596)
...|...|-+..+.. .-=...|..|...|+...+...|.+.|++..+.. ..+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 455555555544432 1124567788888887778888888888877664 34566777778888888888888877433
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (596)
Q Consensus 223 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 302 (596)
..+.. ....-...|....-.|.+.++...+..-|+...+.+ +.|...|..+..+|..+|++..|.++|.+..... |
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 22210 000111122233345666777788888888777765 5667788888888888888888888887776653 3
Q ss_pred CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 007613 303 DEVFLSAL--IDFAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 303 ~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~ 332 (596)
+. +|... ...-+..|.+.+|...+.....
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22 22222 2234567788888877776654
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00069 Score=66.35 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=53.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007613 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (596)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (596)
++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3333334444444444444444432 22 22223444444444444444444444321 2233344444444445555
Q ss_pred hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 390 LPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQA 435 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (596)
++.|+.+.+++.. ..|+. .+|..|..+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555544 23333 24555555555555555555555444
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.81 E-value=0.001 Score=65.12 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=48.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007613 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (596)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (596)
++..+...++++.|..+|+++.+.+ | .....++..+...++-.+|.+++++..+.... |...+..-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 3333334444444444444444432 1 12223334444444444444444444433221 33333333333444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
++.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|...++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 444444444444432 223334444444444444444444444433
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.78 E-value=0.0012 Score=55.79 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=8.3
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 007613 344 SLMGACSNAKNWQKALELYE 363 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~ 363 (596)
...+.|.+.|+.++|...|+
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 33344444444444444433
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.77 E-value=0.0021 Score=54.21 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=48.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVA 179 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~ 179 (596)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 445555555555554432 222 11222233444455555555555555554431111 112333444445555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (596)
+|+..++...... .....+......+.+.|+.++|...|+
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555554432221 122233344445555555555555544
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00043 Score=68.05 Aligned_cols=121 Identities=16% Similarity=0.075 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007613 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (596)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (596)
+.+......+++.+....+.+.+..++.+..... ...-..|..++++.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4444555555665555566666666665555431 11112334466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007613 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (596)
.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666655544444444444444444333
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.027 Score=50.18 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (596)
|..++-+...+|+.+.|...++.+...- |.+. +-..-.-.+-..|++++|+++++.+.+.+ +.|.+++--=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3334444445555555555555544331 2111 11111111223445555555555555443 233333333333333
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
..|+.-+|++-+..... .+..|...|.-+...|...|++++|.-.++++.-
T Consensus 132 a~GK~l~aIk~ln~YL~---~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD---KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HcCCcHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 33333344444444333 1333444444444444444444444444444433
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.75 E-value=0.00063 Score=66.93 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007613 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (596)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (596)
+.+......+++.+....+++.+..++.+..........-..|..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34455555556666666666666666666554322221122344466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007613 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (596)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666665555444555555555554444
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.1e-05 Score=45.39 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (596)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=4.2e-05 Score=44.83 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (596)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (596)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00061 Score=52.29 Aligned_cols=77 Identities=17% Similarity=0.390 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHhhHHH
Q 007613 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (596)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (596)
..|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566788888888888888887 778888888887776542 12234555666666666666666666
Q ss_pred HHHHHH
Q 007613 168 LIDGCA 173 (596)
Q Consensus 168 li~~~~ 173 (596)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665544
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.0025 Score=51.57 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=7.7
Q ss_pred HHHHhccCCHHHHHHHHHHH
Q 007613 204 ITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~ 223 (596)
..++.+.|+++.|.+.|+.+
T Consensus 46 ~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHhhccHHHHHHHHHHH
Confidence 33333333333333333333
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.00084 Score=51.54 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVVF 200 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~ 200 (596)
-...|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455556667899999999999999998 889999999998877643 244677888888888888999999
Q ss_pred HHHHHHHhc
Q 007613 201 NALITACGQ 209 (596)
Q Consensus 201 ~~li~~~~~ 209 (596)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.0014 Score=50.19 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
.+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444445555555555555554432 2233444445555555555555555555554432 223344455555555555
Q ss_pred CHHHHHHHHHHHH
Q 007613 177 QVAKAFGAYGIMR 189 (596)
Q Consensus 177 ~~~~A~~~~~~m~ 189 (596)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555444
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.56 E-value=0.0015 Score=54.16 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=59.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHHHHHHhcCChHH
Q 007613 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEG 110 (596)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 110 (596)
.|...|++++|..+|+-+...+ |++..++..+...+...|++.+|+..|... .+.|+..+-.+...+...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 3447777777777777777776 677777777777777777777777777653 24456666666777777777777
Q ss_pred HHHHHHHHHH
Q 007613 111 AFQVLRLVQE 120 (596)
Q Consensus 111 A~~~~~~m~~ 120 (596)
|++.|+..+.
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.53 E-value=0.0017 Score=49.63 Aligned_cols=93 Identities=19% Similarity=0.167 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007613 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (596)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (596)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 334445555566666666666555432 2223445555555555566666666666555431 22334455555556666
Q ss_pred CCHHHHHHHHHHHHH
Q 007613 423 DDVEVGLMLLSQAKE 437 (596)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (596)
|+++.|...+.+..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666655544
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.52 E-value=0.004 Score=50.33 Aligned_cols=97 Identities=13% Similarity=-0.014 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHH
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLK--ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTYGALID 170 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~ 170 (596)
+..+...+.+.|++++|...+..+.+.... .....+..+..++.+.|++++|.+.|+.+....- +....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444555556666666666665543210 0123444455555666666666666665554310 011334555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007613 171 GCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (596)
++.+.|+.++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555566666666666655554
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.49 E-value=0.19 Score=53.04 Aligned_cols=225 Identities=10% Similarity=0.007 Sum_probs=142.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHHHHHHhcCChHH
Q 007613 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEG 110 (596)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 110 (596)
-++..+++..|++....+.+.. |.......+-.-...+.|..++|..+++.. ...|..|...+-..|...++.++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 3457788899999998888875 433333222222344667788888777653 23477788888888899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------HHH
Q 007613 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAK 180 (596)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~ 180 (596)
|..++++.... -|+......+..+|.+.+++.+-.+.=-++-+ ..+.+...+-++++.+.+.-. ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999988765 56677778888888888877653333222222 124456666666666654321 345
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007613 181 AFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (596)
Q Consensus 181 A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (596)
|.+.++.+.+.+ -.-+..-...-...+...|++++|..++..-.... -...+...-+.-+..+...+++.+..++-.+
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 666677776554 11112222223344556788899988884333221 1223334445566777888888888888888
Q ss_pred HHhcC
Q 007613 260 IHKYN 264 (596)
Q Consensus 260 ~~~~~ 264 (596)
+...+
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 87776
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.42 E-value=0.0044 Score=60.95 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=36.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007613 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (596)
..|++++|+..|.++.+.. +.+...|..+..+|.+.|++++|...++++.+.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344444444444444432 2233344444444444444444444444444332 1233344444444444444444444
Q ss_pred HHHHHHh
Q 007613 396 VLSDMKS 402 (596)
Q Consensus 396 ~~~~m~~ 402 (596)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444443
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.004 Score=58.97 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
|..++...-+.+..+.|..+|.+..+.+ ..+..+|.....+-.+ .++.+.|.++|+...+. +..+...|...+.-+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 3444444444444444444444444322 1122223222222112 23333355555444432 2334444444444444
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 386 DGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+.++.+.|..+|++.... +.++. ..|...+.-=.+.|+++....+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555544432 21111 2455555555555555555555555554
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0038 Score=59.15 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=58.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007613 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (596)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 278 (596)
+|..+++..-+.+..+.|.++|.+.... .....+.+...+++. |...++.+.|.++|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4444555555555555555555555422 112222222222221 11123444455555555444 24444555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 279 CSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
+.+.++.+.|..+|++.... + |.. ..|...+..=.+.|+++...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555443 1 122 25555555555555555555555555543
No 162
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0015 Score=56.80 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=63.7
Q ss_pred CCChHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 007613 89 NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 163 (596)
..|-.+|..+++.+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 3455556666665553 35666666677777777777777777777776643 2221 11111111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007613 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (596)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (596)
..- .-.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 112 -----F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -----FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 123456677888888888888888888888888876654
No 163
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0028 Score=55.21 Aligned_cols=100 Identities=11% Similarity=0.207 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007613 338 GIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (596)
Q Consensus 338 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 412 (596)
+..+|..+++.|.+ .|.++=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 45556666665543 35555566666677777777777777777766554 2211 01111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (596)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (596)
..- .-.+.+-|++++++|...|+-||..++..|++.+|+
T Consensus 112 ---F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 112 ---FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred ---hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 101 112334566667777777777777777777766665
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0062 Score=59.90 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=53.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (596)
+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 445566666666666666553 3345566666666666666666666666666543 33455566666666666666666
Q ss_pred HHHHHHHHhC
Q 007613 182 FGAYGIMRSK 191 (596)
Q Consensus 182 ~~~~~~m~~~ 191 (596)
+..|++....
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.33 E-value=0.0076 Score=50.13 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (596)
.-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|+..+-.+..++.+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3334444555666666666666665543 3344455555555666666666666666665554 3455556666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 007613 175 AGQVAKAFGAYGIMRS 190 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~ 190 (596)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665543
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.29 E-value=0.016 Score=50.56 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
.+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555555555555555444322211 2344444455555555555555555555432 2233444444445
Q ss_pred HHhcCCH
Q 007613 349 CSNAKNW 355 (596)
Q Consensus 349 ~~~~g~~ 355 (596)
|...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5544443
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.25 E-value=0.021 Score=58.80 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007613 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (596)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (596)
+...|..+.-.....|++++|...+++... +.|+...|..+...+...|+.++|...+++... +.|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 445666665555566777777777777776 346767777777777777777777777777766 3444333
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.024 Score=58.37 Aligned_cols=146 Identities=10% Similarity=-0.078 Sum_probs=101.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTG-----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQE 329 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~ 329 (596)
...+.+...|...+.+..... ....|..+|++..+..+. ....+..+..++.... +...+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344677888988888865432 367899999999887543 4455555544443321 12333444443
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007613 330 AKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (596)
Q Consensus 330 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (596)
.... ..+.+...+..+.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3332 234456777777777777899999999999998864 6888899999999999999999999999876 5666
Q ss_pred HHHHH
Q 007613 409 TITYS 413 (596)
Q Consensus 409 ~~t~~ 413 (596)
..||.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0046 Score=56.47 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=64.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 007613 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (596)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 427 (596)
+.+.+++++|+..|.+.++.. +.|.+.|..=..+|.+.|.++.|++-.+..+. +.|. ..+|..|..++...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777766653 34555666666677777777777766666655 3444 3567777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 428 GLMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
|.+.|++.++ ++|+..+|..=+..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 7777777666 66776666555443
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.20 E-value=0.00085 Score=50.39 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=18.4
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (596)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444443210 1222222344444444444444444444
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.20 E-value=0.014 Score=50.61 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007613 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (596)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (596)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+....+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666666777777777777766543222 12356666666777777777777777666543 23344455555
Q ss_pred HHHH
Q 007613 347 GACS 350 (596)
Q Consensus 347 ~~~~ 350 (596)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.18 E-value=0.02 Score=49.84 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=66.0
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (596)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344567777778888999999999988876542222 3577788888888899999998888887753 3356666777
Q ss_pred HHHHHhcCCHHHHHH
Q 007613 169 IDGCAKAGQVAKAFG 183 (596)
Q Consensus 169 i~~~~~~g~~~~A~~ 183 (596)
...|...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777777554443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.16 E-value=0.038 Score=52.58 Aligned_cols=150 Identities=12% Similarity=0.150 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHH
Q 007613 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKS----IKLKPT--VSTMNALIT 382 (596)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~ 382 (596)
.+..|...|++..|-..+. .+...|... |++++|.+.|++..+ .+ .+. ..++..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~---------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLK---------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHH---------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 3445566666666644443 455566666 888888888887764 22 111 234566778
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHH
Q 007613 383 ALCDGDQLPKTMEVLSDMKSLGLC-----PNTI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIPNL--VMFKCIIG 452 (596)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~~--~~~~~li~ 452 (596)
.+.+.|++++|.++|++....-.. .+.. .|...+-.+...||...|.+.+++.... ++..+. .....||.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 899999999999999998764322 2222 2333444667789999999999998753 333332 33455565
Q ss_pred HHHhhHHHHHHhhhhhhhccCCCcc
Q 007613 453 MCSRRYEKARTLNEHVLSFNSGRPQ 477 (596)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~ 477 (596)
+|-. .....+.+++..|+.+.+.
T Consensus 244 A~~~--~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 244 AYEE--GDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHT--T-CCCHHHHCHHHTTSS--
T ss_pred HHHh--CCHHHHHHHHHHHcccCcc
Confidence 5432 1122344566667666543
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.0015 Score=46.69 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=44.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (596)
|++.|++++|++.|+++.... |.+..+...+..++...|++++|...++++. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467888888888888888877 6677777777777777888888888887765 3443344333
No 175
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.27 Score=47.32 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=96.5
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007613 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (596)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (596)
.++...|+.++|..+--.+.+.+. .+ .+..+++ ++.-.++.+.|...|.+-+..+ |+...-. .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk----------~ 241 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK----------S 241 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH----------h
Confidence 345566777777777666666542 22 2233332 3334566777777777766553 3322211 1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007613 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEV 396 (596)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~ 396 (596)
.-.-.+.+..+...| +-..+.|++..|.+.+.+.+.. +.+++...|........+.|+..+|+.-
T Consensus 242 ~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD 309 (486)
T ss_pred HhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh
Confidence 111122222333333 2345788888888888887753 3445566666667777788888888887
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 397 LSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 397 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
-++... +.|.- ..|..-..++.-.+++++|.+-++...+.
T Consensus 310 c~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 310 CNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777654 22211 11222233455578888888888888764
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.14 E-value=0.12 Score=47.71 Aligned_cols=176 Identities=9% Similarity=-0.026 Sum_probs=96.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 007613 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH- 316 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~- 316 (596)
...+.+.|++++|.+.|+.+.... +.+.... -.++.+|.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456677777777777776654 2223332 34556677777777777777777665433222233333333221
Q ss_pred -cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 317 -AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (596)
Q Consensus 317 -~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (596)
.+ + ...|+..|+.+ +.-|=.+.-..+|...+..+... -...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l---------------i~~yP~S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL---------------VRGYPNSQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHH---------------HHHCcCChhHHHHHHHHHHHHHH----HHHHH
Confidence 10 1 12233333333 33333334445555544444320 01111
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 378 NALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
-.+..-|.+.|.+.-|..-|+.+.+. +.+........+..++...|..++|......+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 23455677888888888888887764 222334556677788888888888877766543
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.12 E-value=0.0012 Score=49.49 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=7.5
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 007613 275 AINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 275 li~~~~~~g~~~~a~~~~~ 293 (596)
+..+|.+.|++++|+.+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333344444444444333
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.11 E-value=0.11 Score=47.92 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 344 SLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
.+...|.+.|.+..|..-|+.+.+. +.+......-.++.+|...|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556677777777777777777753 112233455567777777787777777666543
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.06 E-value=0.015 Score=50.43 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=48.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
..|..+...+...|++++|+..|+........+ ...++..+..++...|++++|.+.++...... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345556666666777777777777776543221 12466667777777777777777777766542 223444555555
Q ss_pred HHH
Q 007613 171 GCA 173 (596)
Q Consensus 171 ~~~ 173 (596)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 555
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.05 E-value=0.037 Score=44.35 Aligned_cols=90 Identities=20% Similarity=0.092 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhc
Q 007613 277 NCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS--VGIISYSSLMGACSNA 352 (596)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~ 352 (596)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++........ .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455555555555555555554322 123333444555555555555555555443211 0111222222344455
Q ss_pred CCHHHHHHHHHHHH
Q 007613 353 KNWQKALELYEHMK 366 (596)
Q Consensus 353 g~~~~A~~~~~~m~ 366 (596)
|+.++|...+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554433
No 181
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.23 Score=44.67 Aligned_cols=133 Identities=11% Similarity=0.025 Sum_probs=90.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH---
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI--- 169 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li--- 169 (596)
..-+.++..+...|.+.-...++...++...+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556667777778888888888888877666677788888888888888888888888776543233444444333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 170 --DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 170 --~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
..|.-.+++..|.+.|.+....+ +.|++.-|.-.-+..-.|+..+|.+.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555677888888888777654 334555554444444567888888888888754
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.01 Score=54.27 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007613 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (596)
..+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+... +.-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 456688888888888888875 5567777777888888888888888877777542 22346788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 394 MEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 394 ~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
++.|++.++ +.|+..+|-.=|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 888888876 67887776654443
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.26 Score=44.39 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--- 346 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 346 (596)
.+.+.++..+.-.|.+.-....+++..+.....++...+.+.+.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44566677777777777777788887777656677777888888888888888888888776654334433333333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 347 --GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (596)
Q Consensus 347 --~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 416 (596)
..|.-.+++..|...|.++.... ..|+...|.-.-++.-.|+..+|++.++.|.. ..|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 34455677778888887777543 34555555444444456788888888888876 356655544443
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.043 Score=50.61 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 338 GIISYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
|...|-.|...|...|+.+.|..-|....+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.95 E-value=0.0033 Score=44.86 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=23.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
.|++++|+++|+.+.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555554444432 223444444444444555555555544444443
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.41 Score=46.12 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=52.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007613 277 NCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (596)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (596)
+-..+.|++..|.+.+.+.+... ..|+...|-....+..+.|+.++|+.--+...+.. +.-...+..-..++.-.+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHH
Confidence 34556777777777777766532 34455556556666667777777777766665543 000112222233444556
Q ss_pred CHHHHHHHHHHHHhC
Q 007613 354 NWQKALELYEHMKSI 368 (596)
Q Consensus 354 ~~~~A~~~~~~m~~~ 368 (596)
++++|.+-|+...+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 677777777766543
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.88 E-value=0.058 Score=43.21 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555555555543332 22333444455555555555555555543
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.84 E-value=0.061 Score=54.27 Aligned_cols=257 Identities=13% Similarity=0.162 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 007613 126 DCKLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVK 194 (596)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 194 (596)
....+.+-+..|...|.+++|.++ ++.+... ..+..-++..=.+|.+..+ +-+.+.-+++++++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334455555667777877777554 2222211 1233345555566766554 34455556778888877
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHH------------HHHHh
Q 007613 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIHK 262 (596)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------------~~~~~ 262 (596)
|+... +...++-.|++.+|-++|.+--. + +..+.+|.....++.|.++. ++-.+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~G~-----e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRSGH-----E------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHcCc-----h------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 87654 34456667888888888876422 1 22334444444444444433 21111
Q ss_pred --cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 263 --YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD------MTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 263 --~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
++++.. .+....+...|+.++|..+.-+ +.+.+- ..+..+...+..-+-+...+..|.++|..|-
T Consensus 699 WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 699 WARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred HhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 011111 1223344455665555544311 111110 1133344444444445555666666666554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007613 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (596)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (596)
+. .++++.....+++.+|..+-+...+. .||+ |..-..-++...+++||-
T Consensus 775 D~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLAE~DrFeEAq----------------- 824 (1081)
T KOG1538|consen 775 DL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLAENDRFEEAQ----------------- 824 (1081)
T ss_pred cH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhhhhhhHHHHH-----------------
Confidence 32 24566667777777777776665542 2332 222233333444444333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.|+.+.|+-.+|.++++++..
T Consensus 825 -----kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 -----KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -----HHHHHhcchHHHHHHHHHhhh
Confidence 244556666677777766654
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.74 E-value=0.0065 Score=42.86 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=22.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
.+.+.|++++|...|+++.+.. +-+...|..+..++.+.|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444432 1233344444444444444444444444443
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.74 E-value=0.41 Score=45.54 Aligned_cols=207 Identities=16% Similarity=0.139 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC-ChHhHHHHHHHHHhcCC
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSKD 107 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~ 107 (596)
....+.+-..|++++|...|.+..+...-..+. ....+.+.+|...+++..+. -+..|...+..|...|+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCc
Confidence 334444445677777777776654321000000 00112233444444443111 12234455555666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHH----CCCCC--CHhhHHHHHHHHHhcCCHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GKVDAMFEVFHEMVN----AGIEP--NVHTYGALIDGCAKAGQVAK 180 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~--~~~~~~~li~~~~~~g~~~~ 180 (596)
+..|-.++.. +...|-.. |++++|++.|++... .| .+ -..++..+...+.+.|++++
T Consensus 110 ~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 110 FSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHH
Confidence 6655554443 44455555 778888888777654 22 11 13455667778888899999
Q ss_pred HHHHHHHHHhCCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCC---
Q 007613 181 AFGAYGIMRSKNVKP-----DRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQ--- 249 (596)
Q Consensus 181 A~~~~~~m~~~g~~p-----~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~--- 249 (596)
|.++|++....-... +.. .|-..+-++...|+...|.+.+++......++..+ ......|+.++- .|+
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~ 252 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEA 252 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCC
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHH
Confidence 999998876543221 111 12233345666788888888888877543344333 233444555543 333
Q ss_pred hhHHHHHHHHHH
Q 007613 250 VDRAREVYKMIH 261 (596)
Q Consensus 250 ~~~a~~~~~~~~ 261 (596)
+..+..-|+.+.
T Consensus 253 f~~av~~~d~~~ 264 (282)
T PF14938_consen 253 FTEAVAEYDSIS 264 (282)
T ss_dssp HHHHCHHHTTSS
T ss_pred HHHHHHHHcccC
Confidence 444444444443
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.74 E-value=0.59 Score=44.94 Aligned_cols=107 Identities=12% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (596)
+.-|.-+...|+...|.++-++. . .||...|-..+.+++..+++++-.++-.. +-++.-|-.++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 33344455566666655554433 1 24666666666666666666655554321 11235566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007613 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (596)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (596)
|+..+|..+...+. +..-+..|.++|++.+|.+.-.+
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666655421 13345556666666666555433
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.062 Score=49.58 Aligned_cols=101 Identities=12% Similarity=0.034 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSKNVKPDRVVF 200 (596)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (596)
+-|...|-.|...|...|+.+.|..-|.+..+.. .+|...+..+..++... ....++..+|+++.... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4466677777777777777777777776666543 34555555555544332 23456666777766553 3344455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 201 NALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
..|...+...|++.+|...++.|...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666777777777777776653
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.66 E-value=0.0077 Score=42.46 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=6.1
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 007613 169 IDGCAKAGQVAKAFGAYG 186 (596)
Q Consensus 169 i~~~~~~g~~~~A~~~~~ 186 (596)
..++.+.|++++|...|+
T Consensus 38 g~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 38 GRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333333333333333333
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=1 Score=46.39 Aligned_cols=341 Identities=12% Similarity=0.063 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhCCC-CChHhHHHHHH----------HHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007613 60 DKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMS----------VCASSKDSEGAFQVLRLVQEAGLKADCK 128 (596)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~----------~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 128 (596)
...++.++.......-.++-|...|-+..+ +.+.....|-. .-+--|++++|.+++-+|.++.+
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL----- 765 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL----- 765 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh-----
Confidence 444556666666666677777777755431 22211111111 11224788999998887765532
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----------------
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR----------------- 189 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------- 189 (596)
.|..+.+.|++-...++++.-- .+. +.-...|+.+...++....|++|.+.|..-.
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 3444455555555554443210 000 0012344444444444444444444443221
Q ss_pred ----hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007613 190 ----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (596)
Q Consensus 190 ----~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (596)
...++-+....-.+..++.+.|.-++|.+.|-+.. .| ...+..|...+++.+|.++-+...-..
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s------~p-----kaAv~tCv~LnQW~~avelaq~~~l~q- 908 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS------LP-----KAAVHTCVELNQWGEAVELAQRFQLPQ- 908 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc------Cc-----HHHHHHHHHHHHHHHHHHHHHhccchh-
Confidence 11123334444555566666666666666654321 12 123445555666666665544322111
Q ss_pred CCCHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 266 KGTPEV--------------YTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 266 ~~~~~~--------------~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
..+ .---|..+.+.|++-+|-+++.+|.+ ++.+|-..----++.+. -..+..++.+-.
T Consensus 909 ---v~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al-LvE~h~~~ik~~ 984 (1189)
T KOG2041|consen 909 ---VQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL-LVENHRQTIKEL 984 (1189)
T ss_pred ---HHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 111 01123344455555555555555543 22221111000011111 111222233333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCC
Q 007613 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLC 406 (596)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 406 (596)
+.....|...+... +...|-+.++-++.+..-+ ......|..|..-....|..+.|++.--.+.+. .+-
T Consensus 985 ~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~l 1054 (1189)
T KOG2041|consen 985 RKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFL 1054 (1189)
T ss_pred hhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcC
Confidence 33333332211111 1122222333333222111 122344455555566788899988765544432 356
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 407 PNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
|....|+.+.-+.+....+...-+.|-++.
T Consensus 1055 pP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1055 PPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred CHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 777778776655555444444444443333
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.45 E-value=0.015 Score=41.51 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 007613 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDD 294 (596)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 294 (596)
..+...+...|++++|+..|++..+.+ +.+...|..+..+|.+.| ++++|++.+++
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 333333344444444444444443333 223333344444444444 34444444333
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.44 E-value=0.016 Score=41.41 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=31.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 154 (596)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444555555555555555555555555443 223444555555555555 4555555555444
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.44 E-value=0.44 Score=42.71 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=8.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007613 347 GACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~ 366 (596)
..|.+.|.+..|..-++.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 33444444444444444443
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.43 E-value=0.43 Score=42.78 Aligned_cols=178 Identities=10% Similarity=0.054 Sum_probs=89.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007613 241 MKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (596)
...+...|++.+|.+.|+.+..... +-...+.-.++.++.+.|+++.|...+++..+.-+.-....+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445566777777777777765421 11234455666777777777777777777665432211122222222222111
Q ss_pred CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007613 319 KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (596)
...... ...... .--...+..++.-|=.+....+|...+..+.+. =...--.+..-|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHH
Confidence 111100 000000 000223445555555566666666665555421 11112235677888999999999
Q ss_pred HHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 007613 396 VLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGL 429 (596)
Q Consensus 396 ~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~ 429 (596)
-++.+.+. -|+. .....++.++.+.|..+.+.
T Consensus 163 r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99888774 3443 34567778888888877443
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.39 E-value=0.091 Score=50.23 Aligned_cols=265 Identities=15% Similarity=0.065 Sum_probs=146.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHH--HH--CCC-CCCHhhHHHHHHH
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEM--VN--AGI-EPNVHTYGALIDG 171 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m--~~--~g~-~~~~~~~~~li~~ 171 (596)
-+|+.|+......+|+..++.| .-|. .+|..|.++|.-.+++++|++.+..= .. .|- .-...+-..|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3778888888888888888877 3343 34666677777778888887765321 11 000 0011122233344
Q ss_pred HHhcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHhccCC--------------------HHHHHHHHHHHhhC
Q 007613 172 CAKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAE 226 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~~~ 226 (596)
+--.|.+++|+-.-.+ ..+.|-+ .....+..+...|...|+ ++.|.++|.+-++-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665433221 1111210 112334445555544432 23344444332210
Q ss_pred CC--C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 007613 227 VH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHK----YNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK- 297 (596)
Q Consensus 227 ~~--~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 297 (596)
.. + --.--..|..|.+.|.-.|+++.|+...+.-.. .|- ......+..+.+++.-.|+++.|.+.|+.-..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 00 0 000112345555556666788888776654322 111 11234577788888888999999888876432
Q ss_pred ---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 298 ---KGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 298 ---~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
.|-. .......+|...|.-..+++.|+.++.+-... ...-....+.+|..+|...|..++|..+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2211 12345566777777778888888888764321 112245677888888988888888887776554
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.33 E-value=0.57 Score=39.96 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCC-CCCCCHHHH
Q 007613 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITI 237 (596)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 237 (596)
.|++..--.|..+..+.|+..+|...|++...--+.-|....-.+.++....++...|...++++.+... +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 3455455555556666666666666666655433344455555555555556666666666655543210 11122 22
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhc
Q 007613 238 GALMKACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (596)
..+...+...|...+|+.-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 33445555555555555555555543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.28 E-value=0.076 Score=49.46 Aligned_cols=23 Identities=22% Similarity=-0.015 Sum_probs=10.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHh
Q 007613 202 ALITACGQSGAVDRAFDVLAEMN 224 (596)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~ 224 (596)
.+...|...|++++|...|..+.
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 202
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.25 E-value=1.2 Score=42.88 Aligned_cols=107 Identities=10% Similarity=0.028 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
+.+..+.-+...|+...|.++-.+. . -|+...|..-+.+|+..++|++-.++... +..++-|...+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3445556666778888777775544 2 46788888889999999998877765432 234578888889999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (596)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (596)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 999988888887762 2 1 23355666777777776543
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.17 E-value=0.13 Score=47.94 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHH
Q 007613 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFN 201 (596)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~ 201 (596)
..|...+..+.+.|++++|...|+.+++. .|+. .++-.+...|...|++++|...|+.+...- -+.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555545567777777777777665 3332 356666677777777777777777776541 011133444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 202 ALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
.+...+...|+.++|..+|+.+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777653
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=96.17 E-value=0.064 Score=44.96 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHHHHHHhcCChHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 111 (596)
+...|++++|..+|.-+..-+ +++..+...+...+...+++++|+..|... ...|+...-.....+...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 346777777777777777666 566666666666666667777777776542 233444445555666666777777
Q ss_pred HHHHHHHHH
Q 007613 112 FQVLRLVQE 120 (596)
Q Consensus 112 ~~~~~~m~~ 120 (596)
+..|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777766665
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.17 E-value=0.98 Score=46.09 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 007613 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (596)
Q Consensus 41 ~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (596)
+-+-+.-++++.++|.+|... ++...+.-.|.+.+|.++|++
T Consensus 616 ~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHH
Confidence 333344445555555544332 233345556667777776664
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.09 E-value=0.78 Score=39.18 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CCHHHH
Q 007613 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVY 272 (596)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 272 (596)
.|+...-..|..+..+.|+..+|...|.+.... .+..|......+.++....+++..|...++.+.+.... .++...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 344444445556666666666666666665542 33444455555555555555555555555555443210 012223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
-.+...|...|++.+|..-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 33444444555555555555554443
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.03 E-value=0.042 Score=46.34 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=22.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
++..+...|++++|.++...+.... +-|...|..+|.+|...|+...|.+.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333344444444444444444332 233444444444444444444444444433
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.00 E-value=0.048 Score=39.37 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=18.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
+.+++++|.++++.+...+ +.+...|.....++.+.|++++|.+.|+...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444443333332 2233333333333334444444444443333
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.97 E-value=0.052 Score=45.79 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhhHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHTYG 166 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 166 (596)
....++..+...|++++|..+.+.+.... |.|...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667777889999999999999999875 67899999999999999999999999998753 58888876543
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.95 E-value=0.056 Score=39.04 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=48.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007613 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (596)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (596)
..|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56788899999999999998875 5577788888889999999999999999988763
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=2.8 Score=43.91 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 007613 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (596)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 388 (596)
-.+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+... .+.-|.-.+.+|.+.|
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 33334444566666655544432 3455555555566666666665554433332 2344555566666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (596)
+.+||.+.+.+... .. -...+|.+.|++.+|.++-
T Consensus 759 n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 66666666654321 11 2344555666665555443
No 212
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.37 Score=40.50 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=79.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC----CChHhHHHHHH---HHHhc
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS---VCASS 105 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~---~~~~~ 105 (596)
-.|.+.++.++|+..|.++.+.|.-............+..+.|+...|...|+.+.. |-+.-=..-++ .+...
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 345689999999999999999987666666666666777788888889988887642 21110011111 24456
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (596)
|.++......+-+-..+-+.-...-..|.-+..+.|++..|.++|..+..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 67776666665554444333334445555555677777777777777654
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.86 E-value=0.19 Score=40.75 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 007613 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (596)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (596)
...|+..+..+++.+|+..+++..|+++++..... .+++-+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 34566666666666666666666666666666554 345555666666665443
No 214
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.79 E-value=0.58 Score=47.26 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=103.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHH
Q 007613 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (596)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (596)
.+.....-|...+-+|+++++.++.+.-.-...+| ......+++++.+.|-.+.|+.+-. |. ..-.....
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl 329 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELAL 329 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHH
Confidence 45667777888888899988777765211111112 3335566777777788888877632 22 33445566
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007613 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (596)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (596)
+.|+++.|.++... ..+...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 78888888776542 34677888888888888888888888877542 5677777888888877777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007613 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (596)
+-+.....| -++....++.-.|+.++..+++.+.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777766665 2556666666678887777777553
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.78 E-value=0.084 Score=47.85 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=66.5
Q ss_pred HHHhhCC--CCChHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007613 82 RFFKLVP--NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 82 ~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (596)
+.|..++ +.|-.+|-+.+..+.. .+.++--...+..|.+.|+..|..+|+.|++.+-+..-
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------------ 122 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------------ 122 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc------------
Confidence 3444444 3455566666655543 24555555666677777777777777777766533211
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007613 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (596)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (596)
.|.. .+....--|- .+-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 123 ----iP~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 123 ----IPQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ----ccHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1110 1111111121 22345788888888888888888888888888877653
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.69 E-value=0.12 Score=49.53 Aligned_cols=266 Identities=18% Similarity=0.066 Sum_probs=151.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHHH
Q 007613 135 TTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIM--RSK--NVK-PDRVVFNALIT 205 (596)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~~-p~~~~~~~li~ 205 (596)
.-+|+.|+....+.+|+..++.|.+ | ..+|..|.++|.-.+++++|++....= ..+ |-+ -...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999998733 3 345677777888888899998764321 110 100 01122223334
Q ss_pred HHhccCCHHHHHHHHHHHh----hCCCCCCCCHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHH
Q 007613 206 ACGQSGAVDRAFDVLAEMN----AEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (596)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~ 261 (596)
.+--.|.+++|.-+..+-+ +-+..+ .....+-.+...|...|+ ++.|.++|..=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4444566666654322211 100011 112233344555544432 122333332211
Q ss_pred ----hcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 262 ----KYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 262 ----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
+.|- -..-..|..|.+.|.-.|+++.|+...+.=+ +-|-. .-...++.+..++.-.|+++.|.+.++...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0011345666666777788998887665422 22211 123456777788888899999988887643
Q ss_pred H----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 332 N----QG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 332 ~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
. .| -.....+.-+|...|.-..++++|+..+.+-.. . ...-...++.+|..+|...|..++|+.+.+.-+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 123345666788888888889999888775432 1 112245677788888988899888888776644
Q ss_pred h
Q 007613 402 S 402 (596)
Q Consensus 402 ~ 402 (596)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 3
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.67 E-value=0.24 Score=40.16 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHh-------------hCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-
Q 007613 198 VVFNALITACGQSGAVDRAFDVLAEMN-------------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY- 263 (596)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 263 (596)
.++..++.++++.|+++...++++..- ....+..|+..+..+++.+|+..|++..|.++.+.+.+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445555555555555555555543321 111234455555555555555555555555555544332
Q ss_pred CCCCCHHHHHHHHH
Q 007613 264 NIKGTPEVYTIAIN 277 (596)
Q Consensus 264 ~~~~~~~~~~~li~ 277 (596)
+++.+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33333444444443
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.62 E-value=2.3 Score=40.95 Aligned_cols=126 Identities=16% Similarity=0.081 Sum_probs=82.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007613 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL-ELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (596)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (596)
..++.+.|+..++-.+++.+-+....|+. + ++..+.+.|+.-... +-.+.+.... +.+..+-..+..+-...|+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e 344 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccc
Confidence 45678888888888888888887644543 2 223355666632221 1111222211 3456677777788888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC
Q 007613 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLMLLSQAKEDGVIPN 443 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~g~~p~ 443 (596)
+..|..--+...+ ..|....|..|.+.-. ..|+-.++++.+.+.++.--+|.
T Consensus 345 ~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 345 FSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 8888777776665 5788888887777654 45999999999998887644444
No 219
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.62 E-value=2.5 Score=41.50 Aligned_cols=135 Identities=14% Similarity=0.162 Sum_probs=80.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHhhhHHHHHH---HHHHhhCCCCChHhHHHHHHH--HHhcCC
Q 007613 37 RQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEA---FRFFKLVPNPTLSTFNMLMSV--CASSKD 107 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~~~~~~~~li~~--~~~~g~ 107 (596)
+++++.+|-.+|.++.+.-.-. ....+.+.+++++-. ++++.- +..+++-.+ ...|-.+..+ +-+.++
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhh
Confidence 8999999999999987654211 112333444444432 223322 222232222 2334455444 346788
Q ss_pred hHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHhhHHHHH
Q 007613 108 SEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (596)
Q Consensus 108 ~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li 169 (596)
++.|++.+..-... +-.| |-..-+..+..+...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888888766543 2221 2222345677788889999999888887653 3447888888876
Q ss_pred HHHHh
Q 007613 170 DGCAK 174 (596)
Q Consensus 170 ~~~~~ 174 (596)
-++++
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 66655
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=95.44 E-value=1.4 Score=37.23 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=62.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (596)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (596)
..-+...|++++|..+|+-+...+.. +..-|..|..++-..+++++|...|......+ .-|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34456778888888888877765544 55556666666677788888888887766554 23444445566777888888
Q ss_pred HHHHHHHHHHHh
Q 007613 356 QKALELYEHMKS 367 (596)
Q Consensus 356 ~~A~~~~~~m~~ 367 (596)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887775
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.33 E-value=1.2 Score=35.78 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (596)
....+......|+-++-.++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444455555555555555554422 4445555555555555555555555555555544
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.28 E-value=0.39 Score=47.45 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=28.0
Q ss_pred CCCcccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (596)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~ 55 (596)
....|++.......-..|.+.|++++|+..|++.++.+
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34556666666666677778888888888888887776
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.17 E-value=0.77 Score=46.39 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (596)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (596)
.-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++.|.++-++. .+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 345666666666666666666543211 2233345666666666553322 2455676777766
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (596)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (596)
.+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+.....|- ++....++...|+.++
T Consensus 358 L~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEE 420 (443)
T ss_dssp HHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHH
Confidence 77777777766666542 144555556666666666666655555541 4444455555566666
Q ss_pred HHHHHHH
Q 007613 288 ACSVYDD 294 (596)
Q Consensus 288 a~~~~~~ 294 (596)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 224
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.13 E-value=0.19 Score=45.67 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 007613 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLSQAK 436 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~~~ 436 (596)
+-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|-
T Consensus 138 QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3456788999999999999999999999999887753 33344444443
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.09 E-value=1.7 Score=36.19 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=16.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (596)
+..+...+........++.+...+ ..+...+|.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333334444444444444333 2333344444444443
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.03 E-value=3.6 Score=39.68 Aligned_cols=286 Identities=15% Similarity=0.120 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHhhC---CCCChHhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHH
Q 007613 74 QKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAM 146 (596)
Q Consensus 74 ~~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 146 (596)
.|+-..|+++-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -...|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 35556666655432 23455555555554 3346999999999999985 22222 233344444578899999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHhc---cCCHHHHHHHH
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRV--VFNALITACGQ---SGAVDRAFDVL 220 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~---~g~~~~a~~~~ 220 (596)
.+.-+..-..- +.-...+.+.+...|..|+|+.|+++.+.-+... +.++.. .-..|+.+-.. .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88887766542 3346778899999999999999999998776542 344433 22234433221 13455555554
Q ss_pred HHHhhCCCCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-C
Q 007613 221 AEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 298 (596)
Q Consensus 221 ~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~ 298 (596)
.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+... .+.++...+ +.+.|+. ++.-+++..+ .
T Consensus 253 ~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~ia~lY~--~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDIALLYV--RARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHHHHHHH--HhcCCCc--HHHHHHHHHHHH
Confidence 44443 4555332 22345788999999999999999988754 444444333 3455543 3333333221 1
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007613 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSIKLKPTVST 376 (596)
Q Consensus 299 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (596)
..+| +......+..+....|++..|..--+...+. .|....|..|.+.-. ..|+-.++...+.+..+. |....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCc
Confidence 1233 4566777778888899998888776666554 577778877777664 459999999999998874 44445
Q ss_pred HH
Q 007613 377 MN 378 (596)
Q Consensus 377 ~~ 378 (596)
|+
T Consensus 398 W~ 399 (531)
T COG3898 398 WT 399 (531)
T ss_pred cc
Confidence 54
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=1.3 Score=40.95 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC-hHhHH---HHHHHHHhcCCh
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFN---MLMSVCASSKDS 108 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~g~~ 108 (596)
..++..|++.+|..+|+...... +.+......+...+...|+++.|..++..+|... ...+. .-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34456677777777776666655 4444444555555666666666666666665211 11111 122333333333
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcC
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g 176 (596)
.+...+-+..-.. +-|...-..+...+...|+.++|.+.+-.+.+.. -..|...-..|+..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333333221 2244455555555666666666655444444321 1223334444444444444
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.95 E-value=0.078 Score=38.88 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
++.+...|...|++++|...|++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444433
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.91 E-value=4.1 Score=39.81 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 407 PNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
.|--.+.+++.++.-.|+++.|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455667778888888888888888888874
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.85 E-value=0.096 Score=38.41 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 374 VSTMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
..+++.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357888999999999999999999987642 122 22 45678888899999999999999998765
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=3.4 Score=38.38 Aligned_cols=143 Identities=16% Similarity=0.101 Sum_probs=67.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007613 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (596)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (596)
...|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 35556666666665555442 22334445555566666666666666665543321111112122233333333333333
Q ss_pred HHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHH
Q 007613 218 DVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWE 286 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~ 286 (596)
.+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+++. -.+...-..++..+.--|.-+
T Consensus 224 ~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 224 DLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 33333322 23 344444555566666666666655554444321 223345555666655555433
No 232
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=5.7 Score=42.26 Aligned_cols=174 Identities=12% Similarity=0.100 Sum_probs=98.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-CCChHhHHHHHHHHHhcCChHHH
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGA 111 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 111 (596)
+.|++..-+..|+.+-+.-.... .....++...+..+...|++++|...|-+.. .-++ ..+++-+....+..+-
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHH
Confidence 34455555666665544322211 2234456666777778899999988876533 1121 2345556666677777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
-..++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+... .|.. ..-....+..+-+.+-.++|..+-.+...
T Consensus 417 t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 417 TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 7788888888854 44555678999999988887766655443 2211 11133455555566666666555433321
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007613 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (596)
+......++ -..+++++|++.+..+
T Consensus 492 ----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 ----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred ----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 222223322 2345566666555443
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.69 E-value=4.7 Score=39.44 Aligned_cols=72 Identities=8% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 101 VCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCAK---SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
.|-...+++.-.++.+.+...- +.-...+--...-++.+ .|+.++|++++..+....-.+++.+|..+.+.|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3555556666666666655421 01111112222333344 566666666666644433355555665555554
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.68 E-value=5.9 Score=40.55 Aligned_cols=402 Identities=11% Similarity=0.103 Sum_probs=215.6
Q ss_pred hhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHH
Q 007613 26 SEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (596)
Q Consensus 26 ~~~~~~~~~l~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (596)
......|..|+..+ ..+.+..+++.+...- |.-..++..+...-.+.|..+.+..+|++.. +-.+..|...
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY 119 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44556787777433 3344555566666554 6666666777777777888999999998753 4566677776
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-
Q 007613 99 MSVCA-SSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK- 174 (596)
Q Consensus 99 i~~~~-~~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 174 (596)
+.-+. ..|+.+.....|+..... |.. .....|...|..-..++++.....+|+++++. ....++..-.-|.+
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence 66544 457788888888887753 211 23556777887778888999999999998863 22334443333332
Q ss_pred --c------CCHHHHHHHHHHHHhC---C-CCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 007613 175 --A------GQVAKAFGAYGIMRSK---N-VKPDRVVFNALITACG-QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (596)
Q Consensus 175 --~------g~~~~A~~~~~~m~~~---g-~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll 241 (596)
. ...+++.++-...... + ..+....+..-+.--. ..+..+++...+.+.. ..--
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-------------~~~~ 262 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-------------SIHE 262 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-------------HHHH
Confidence 1 1222222222111110 0 0000111111110000 0011111111111000 0001
Q ss_pred HHHHHcCChhHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 242 KACANAGQVDRAREVYKMIHKYN-------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (596)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (596)
.++-......+.+..|+.-.++- .+++...|...+..-...|+++.+.-+|++..-.- .-=...|-..+.-.
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m 341 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWM 341 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHH
Confidence 11222222333333333332221 12245678888888889999999988888875421 11122344444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChh
Q 007613 315 GHAGKVEAAFEILQEAKNQGIS--VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLP 391 (596)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~ 391 (596)
...|+.+-|..++....+-..+ |....+.+.+ .-..|+...|..+++.+.+.- |+.. .-..-+....+.|..+
T Consensus 342 ~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 342 ESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchh
Confidence 4458888888877776665433 3333333333 334679999999999988653 5432 2223344556677777
Q ss_pred HHH---HHHHHHHhCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 392 KTM---EVLSDMKSLGLCPNTITYSILLV-----ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 392 ~A~---~~~~~m~~~g~~p~~~t~~~ll~-----a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
.+. +++........ +..+...+.- .+.-.++.+.|..++.++.+. +.++...|..+++.+
T Consensus 418 ~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 418 DANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred hhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 777 33333332111 2222222221 233467888999999998874 455666777777754
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.56 E-value=0.19 Score=49.48 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007613 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (596)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (596)
+.+...++.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 456778899999999999999999999998875 4553 358889999999999999999999988742 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 007613 412 YSILLV--ACERKDDVEVGLMLLSQAKEDGV 440 (596)
Q Consensus 412 ~~~ll~--a~~~~g~~~~a~~~~~~~~~~g~ 440 (596)
|..+.. .+....+.++..++++.+.+-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 322111 11223344566677777776654
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.54 E-value=2.2 Score=35.50 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=61.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007613 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (596)
.++..+.+.+.......+++.+...+ ..+...++.++..|++.+ ..+..+.++. . ++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 44555555566666666666666655 345556666666666543 2233333331 1 12233444556666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
.++++..++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666665554321 11122222222 5566666655541 24445655555443
No 237
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.49 E-value=5.4 Score=39.26 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILL 416 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll 416 (596)
..+|..+++.-.+..-++.|+.+|-+..+.+ +.+++..++++|.-++ .|+..-|..+|+--.. ..||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 4456666666666666777777777777766 5566777777777665 3556677777766333 23444443 3455
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007613 417 VACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~ 436 (596)
.-+...++-..|+.+|+..+
T Consensus 474 ~fLi~inde~naraLFetsv 493 (660)
T COG5107 474 LFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhH
Confidence 55666677777777777444
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.76 Score=44.39 Aligned_cols=135 Identities=17% Similarity=0.076 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCC
Q 007613 32 YNRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (596)
-|.+.+.|++..|...|++..+.= ..+. ++...+ ...-..+++.+...+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~------------------ee~~~~----~~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE------------------EEQKKA----EALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCH------------------HHHHHH----HHHHHHHhhHHHHHHHhhhh
Confidence 356678899999998888865421 1111 000000 01123456666677788888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH-HHHHHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYG 186 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~ 186 (596)
+..|++.-...++.+ ++|+-..-.-..+|...|+++.|+..|+++.+.. +-|..+-+-|+.+-.+..... ...++|.
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887765 6677777777888888888888888888888763 334444555555544444443 3467777
Q ss_pred HHHh
Q 007613 187 IMRS 190 (596)
Q Consensus 187 ~m~~ 190 (596)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7764
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.93 E-value=3.1 Score=42.78 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=117.2
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHhc----cCCHHH
Q 007613 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDR-----VVFNALITACGQ----SGAVDR 215 (596)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~li~~~~~----~g~~~~ 215 (596)
..-+|.-+... +|| ....++....-.|+-+.+++.+.+..+.+ +.-.. -.|...+..++. ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555543 133 35677787888899999999888776542 22111 234444444443 456789
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 216 AFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYN--I-KGTPEVYTIAINCCSQTGDWEFACSV 291 (596)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (596)
|.+++..+... -|+...|... .+.+...|++++|.+.|+...... . ......+--+.-.+.-..+|++|.+.
T Consensus 252 a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 252 AEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 99999999864 4665555443 467788999999999999755321 1 11234556677778889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 007613 292 YDDMTKKGVIPDEVFLSALIDF-AGHAGKV-------EAAFEILQEAKN 332 (596)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~~~~ 332 (596)
|..+.+..-. +..+|.-+..+ +...|+. ++|.++|.++..
T Consensus 328 f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999986433 44445444443 3456777 889999988754
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=1.5 Score=42.46 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
.+++.+.-+|.+.+++..|++.-...+..+.. |.-.+-.-..++...|+++.|+..|+.+.+.. +.|-.+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34666677777777777777777777766543 56666666667777777777777777777764 33444444454444
Q ss_pred HhcCCHH-HHHHHHHHHHh
Q 007613 350 SNAKNWQ-KALELYEHMKS 367 (596)
Q Consensus 350 ~~~g~~~-~A~~~~~~m~~ 367 (596)
-+..... ...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4443333 33556666653
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=93.65 E-value=8.3 Score=38.53 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
.+|.++-++..+.+.. |......+..+....++++.|...|++....+ +....+|......+.-+|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555433 55555555555555555666666666555543 222333333333444456666666665554
Q ss_pred Hh
Q 007613 366 KS 367 (596)
Q Consensus 366 ~~ 367 (596)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 43
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=2.1 Score=40.24 Aligned_cols=115 Identities=10% Similarity=-0.014 Sum_probs=65.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCC
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQ 249 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~ 249 (596)
..|+..+|-..++++.+. .+.|..++.-.=++|...|+.+.-...++++... ..+|. ++-..+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356666666666766654 3556666666666777777776666666666532 23332 222223333445666
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (596)
+++|++.-++..+.+ +.|.-+-.+....+-..|++.++.++..
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 666666666665554 3444444555555556666666665543
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.47 E-value=14 Score=41.33 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=23.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (596)
+.+|..+|++.+|..+..++.... .--..+-..|+.-+...+++-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 444455555555555544432211 0000111344444455555555555544443
No 244
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=12 Score=39.47 Aligned_cols=302 Identities=13% Similarity=0.083 Sum_probs=169.1
Q ss_pred HcCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCC
Q 007613 120 EAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKN 192 (596)
Q Consensus 120 ~~g~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 192 (596)
..|++.+..-|. .+|+-+...+.+..|+++-..+...-..- ...|.....-+.+..+ -+++++..++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 456666666554 45667777888888988877665221111 4566666666666532 223333333322222
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------
Q 007613 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYN------ 264 (596)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------ 264 (596)
. .+.++|..+.+-....|+.+-|..+++.=......++ .+..-+...+.-+...|+.+....++-++...-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 3456788888777788999999888764222111110 122234555666777888877777766554421
Q ss_pred -----CCCCHHHHHHHHH--------HHHhcCCHHHHHHHHHHH--H----hCCCCCCHHHHHHHHHHHHhcCCHH---H
Q 007613 265 -----IKGTPEVYTIAIN--------CCSQTGDWEFACSVYDDM--T----KKGVIPDEVFLSALIDFAGHAGKVE---A 322 (596)
Q Consensus 265 -----~~~~~~~~~~li~--------~~~~~g~~~~a~~~~~~m--~----~~~~~p~~~~~~~li~~~~~~g~~~---~ 322 (596)
.+.....|.-++. .+.+.++-.++...|..- . ..+..|+ ......++.+..... +
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 1112222322222 111112222222222110 0 1122333 233344444443311 1
Q ss_pred H-------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007613 323 A-------FEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (596)
Q Consensus 323 a-------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (596)
| .++.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. -||-..|-.=+.+++..+++++-+
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 1 112222221 1223333445555666778899999998888776 688888888899999999998876
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
++-+.++ .+.-|.-+..+|.+.|+.++|.+++.+..
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 6655443 25667778889999999999999886653
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.34 E-value=11 Score=38.80 Aligned_cols=179 Identities=14% Similarity=0.124 Sum_probs=121.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-----HHHHHHHHHHHHH----cCChh
Q 007613 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACAN----AGQVD 251 (596)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~----~g~~~ 251 (596)
..-+|.-+.+. +|| .+..++...+=.|+-+.+++++.+..+. .++... ...|...+..++. ....+
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 34455555544 233 4556777888889999999999887653 344332 2345666655544 45688
Q ss_pred HHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 252 RAREVYKMIHKYNIKGTPEVYT-IAINCCSQTGDWEFACSVYDDMTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
.|.++++.+.++- |+...|. .-.+.+...|++++|++.|++...... +.....+--+...+.-.+++++|...|
T Consensus 251 ~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 9999999998873 4444443 345667788999999999997653211 123445556666788889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHh
Q 007613 328 QEAKNQGISVGIISYSSLMG-ACSNAKNW-------QKALELYEHMKS 367 (596)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 367 (596)
..+.+.+ ..+..+|.-+.. ++...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999875 344555544433 34567777 899999998764
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.25 E-value=3.7 Score=33.07 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (596)
...++...+.|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++-+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555555656555565555432 234555555566666666666666666666666553
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=1.6 Score=40.08 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (596)
|+.-+..| +.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.....+.-...+.-|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444432 44556666666655554410 0011223345555555666666665555555432111111234444445
Q ss_pred HHHHcCChhHHHHHHHHHHhc
Q 007613 243 ACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~ 263 (596)
+..+.|+.++|...|+.+.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555555555555555555554
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.02 E-value=1.7 Score=39.80 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHH
Q 007613 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAI 276 (596)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li 276 (596)
.|+.-+. +.+.|++..|.+.|........+-.-....+-.|..++...|++++|..+|..+.+.-. +.-+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3544443 33455566666666666553211111122333456666666666666666666554321 11234555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 007613 277 NCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5566666666666666665554
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.96 E-value=4 Score=32.74 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=56.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCC
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQ 177 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~ 177 (596)
+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++-+++..+..-..+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3556677777777777766542 4456677777777777777777777777666542222222 22233334566677
Q ss_pred HHHHHHHHHHHHhCC
Q 007613 178 VAKAFGAYGIMRSKN 192 (596)
Q Consensus 178 ~~~A~~~~~~m~~~g 192 (596)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666555
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.91 E-value=1.3 Score=41.19 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNALI 204 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li 204 (596)
+..++..+..+|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|++.|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4445556666666666666666666553 44566666666666666666666666666543 35666655555444
Q ss_pred HH
Q 007613 205 TA 206 (596)
Q Consensus 205 ~~ 206 (596)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.78 E-value=4.3 Score=33.46 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=48.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 99 MSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
.....+.|++++|.+.|+.+..+-. +-.....-.|+.+|.+.+++++|...+++.++..-..-..-|-..+.+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3445567888888888888776521 12345566777888888888888888888777531111234555555554433
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.55 E-value=8.1 Score=35.25 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007613 346 MGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~ 367 (596)
.+-|.+.|.+..|..-++.|.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHh
Confidence 3444555555555555555544
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.28 E-value=13 Score=36.83 Aligned_cols=146 Identities=10% Similarity=0.130 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 007613 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-MNALI 381 (596)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li 381 (596)
...|...+..-.+..-++.|..+|.++.+.+ ..+++.++++++..++ .|+..-|..+|+--... -||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567778888788888999999999999988 5678888999998776 67778899998854433 345443 34566
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007613 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (596)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (596)
.-+..-++-+.|..+|+..... +..+ ...|..+|.--+.-|++..+..+-++|.+ +-|...+-......|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 6777788889999999965543 3334 56789999988999999999888888877 4455544444444443
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.23 E-value=5.1 Score=32.17 Aligned_cols=90 Identities=12% Similarity=-0.012 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 007613 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNW 355 (596)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~ 355 (596)
....|+.+.|++.|.+....-+. ....|+.-..++.-.|+.++|++-+++..+..-.-... .|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 33445555555555544443222 34445555555555555555555554444331111111 122222234455556
Q ss_pred HHHHHHHHHHHhCC
Q 007613 356 QKALELYEHMKSIK 369 (596)
Q Consensus 356 ~~A~~~~~~m~~~~ 369 (596)
+.|+.=|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666555555444
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.07 E-value=2 Score=40.03 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHHHHHH
Q 007613 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-----LGLCPNTITYSI 414 (596)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 414 (596)
.++..++..+..+|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666666666666666666543 34556666667777777766666666666543 344454444433
Q ss_pred H
Q 007613 415 L 415 (596)
Q Consensus 415 l 415 (596)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.02 E-value=0.66 Score=29.36 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=8.0
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 007613 242 KACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~ 262 (596)
..|.+.|++++|+++|+++.+
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.00 E-value=5.2 Score=32.98 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhc
Q 007613 240 LMKACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~ 263 (596)
++.+|.+.+++++|...+++..+.
T Consensus 53 l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.98 E-value=11 Score=35.62 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 007613 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 199 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (596)
++..++.+|...+..+ +|.++++.+..+ .+-+ ..++..-++.+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665543 444555555432 1222 233334455555566677777777766654
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.98 E-value=13 Score=37.41 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 343 SSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
..|..+..+.|+.++|.+.|++|.+.... .+......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555666667776666666543211 1223444566666666667666666666543
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.95 E-value=0.6 Score=29.57 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (596)
++..+...|...|++++|+++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666553
No 261
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.93 E-value=5 Score=38.22 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhC
Q 007613 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAK--A----GQVAKAFGAYGIMRSK 191 (596)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~ 191 (596)
+...+++.|.+.|+..+..+|-+..-.... . ....+|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344555666666655555444442222222 1 1234566666666654
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=91.86 E-value=15 Score=36.79 Aligned_cols=143 Identities=12% Similarity=0.106 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhCC---CCC---hHhHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (596)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (596)
...+.|+.+|.+.. +-| ...|..+...+. ......+|.++.++..+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 35677888887755 323 333332222211 1234567777888888776 6678888888887788
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCCHHHH
Q 007613 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV---VFNALITACGQSGAVDRA 216 (596)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a 216 (596)
.++++.|..+|++....+ +....+|........-+|+.++|.+.+++..+. .|... .....+..|+.. .++.|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 888999999999888764 333555666666667789999999998886655 33322 233334455554 45667
Q ss_pred HHHHHH
Q 007613 217 FDVLAE 222 (596)
Q Consensus 217 ~~~~~~ 222 (596)
.+++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 776654
No 263
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.73 E-value=12 Score=35.57 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC--
Q 007613 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH--A----GKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN-- 354 (596)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 354 (596)
++.+.+++.|.+.|+.-+..++-+....... . .....+..+++.|++... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455666677777776555555443322222 1 124567788888877642 2344455555433 2333
Q ss_pred --HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 355 --WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILLV 417 (596)
Q Consensus 355 --~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (596)
.+.++.+|+.+.+.|+.++ ...+.+-|-++..... ..++.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3556677777777666554 2234344444433222 3467778888888888877777665543
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=6 Score=37.38 Aligned_cols=151 Identities=13% Similarity=0.022 Sum_probs=88.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHH--HHHHHHhccCCHH
Q 007613 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV--VFN--ALITACGQSGAVD 214 (596)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~--~li~~~~~~g~~~ 214 (596)
-.|+..+|-..++++.+. .+.|..+++--=++|.-.|+.+.-...+++....- .+|.. +|. ...-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 456777777777777764 35567777777778888888888888887776541 23332 222 2233455678888
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 007613 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSV 291 (596)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~ 291 (596)
+|.+.-++..+.. +.|.-.-.++...+--.|+..++.+...+-...=-..+ ..-|=...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 8888777766431 23455555666667777788887776655432210000 01111222334445666666666
Q ss_pred HHH
Q 007613 292 YDD 294 (596)
Q Consensus 292 ~~~ 294 (596)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 654
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.62 E-value=9.8 Score=34.15 Aligned_cols=199 Identities=16% Similarity=0.074 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 007613 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (596)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~- 312 (596)
.........+...+.+..+...+...... ........+......+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44555555666666666666666655542 223344555566666666666777777777666544332 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC
Q 007613 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQ 389 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 389 (596)
.+...|+++.|...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777654221 1223334444444666777888888877777643 22 35667777777777778
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 390 LPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.+.|...+...... .|+ ...+..+...+...+..+.+...+.+..+
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888877663 343 33444444444466677888877777776
No 266
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.55 E-value=4.6 Score=30.62 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 007613 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (596)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 117 (596)
..+.+||..+-+.+...+. ....+...-+....++|++++|..+.+..+.||...|.+|-.. +.|-.+.+..-+.+
T Consensus 18 ~HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred chHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 4577889888888887762 2333333333445677999999999999999999999877553 55666666666667
Q ss_pred HHHcCCCCCHHHH
Q 007613 118 VQEAGLKADCKLY 130 (596)
Q Consensus 118 m~~~g~~~~~~~~ 130 (596)
|...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 77666 4444443
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.17 E-value=10 Score=33.55 Aligned_cols=178 Identities=16% Similarity=0.091 Sum_probs=104.2
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
|-+.-|+-=|.+..... +.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 44444555555554443 3446889999999999999999999999998876543322333222 233458888888777
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007613 328 QEAKNQGISVGI--ISYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (596)
Q Consensus 328 ~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (596)
...-+.. +.|+ ..|--++ ...-++.+|..-+ ++.. ..|..-|...|-.|.-..-.+ ..+++++...
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~- 225 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISE--ETLMERLKAD- 225 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-
Confidence 7666654 2222 2222222 2233455665433 3433 345566665555544222222 2234444432
Q ss_pred CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 405 LCPN-------TITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 405 ~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
-..+ ..||--+..-+...|++++|..+|+-.+..
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2212 246667777888999999999999888764
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.93 E-value=5.1 Score=34.84 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555566666666666655554332222 2334445555555556555555554443
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.81 E-value=16 Score=35.10 Aligned_cols=128 Identities=15% Similarity=0.083 Sum_probs=71.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH--
Q 007613 239 ALMKACANAGQVDRAREVYKMIHKYNI-----KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFL-- 307 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~-- 307 (596)
++..++...+.++++++.|+...+... .....++..|.+.|.+..++++|.-...+..+ .++.--...|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555666667777777776654311 11234677777777777777777655544322 2222111112
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 308 ---SALIDFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 308 ---~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
..+.-++...|++..|.+.-++..+ .|-++ -......+.+.|...|+.+.|+.-|++.-
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233355666777666666665443 33221 22344567778888888888877776543
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.56 E-value=21 Score=36.04 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (596)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (596)
..+..++-+.|+.++|++.++++.+.... .+..+...|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34455556677888888888777765322 23345666777777788888887777776543
No 271
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.51 E-value=3.9 Score=31.20 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 007613 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~ 454 (596)
+..+-++.+....+.|++....+.+.||.+..++..|.++|+-++ +.|-. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 556667777777899999999999999999999999999999887 43433 33788887653
No 272
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.45 E-value=4 Score=41.69 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=80.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHH
Q 007613 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (596)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 110 (596)
-|..++-.|+++.|-.++..+++. .+..+..++.++|-.++|+.+- ++||. -.....+.|+++.
T Consensus 592 eyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s---~D~d~-----rFelal~lgrl~i 655 (794)
T KOG0276|consen 592 EYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS---TDPDQ-----RFELALKLGRLDI 655 (794)
T ss_pred HHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC---CChhh-----hhhhhhhcCcHHH
Confidence 344555566666666655544422 1223334445555555555431 12211 1223345566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (596)
|.++..+.. +..-|..|.++..+.+++..|.+-|..... |..|+-.+...|+-+....+-....+
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 666654432 345566777777777777777666655442 44556666666665554444444444
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007613 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (596)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (596)
.|. .|.-.-+|...|+++++.+++..
T Consensus 721 ~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 721 QGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 432 22333345556666666666544
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.33 E-value=14 Score=33.75 Aligned_cols=174 Identities=8% Similarity=-0.002 Sum_probs=93.2
Q ss_pred HHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 007613 244 CANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA---- 317 (596)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---- 317 (596)
-.+.|++++|.+.|+.+..... +-...+.-.++.++.+.+++++|+..+++....-+.....-|..-|.+.+.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3466777777777777765431 1234455566677777788888887777766543332223344444444321
Q ss_pred ---CCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 007613 318 ---GKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (596)
Q Consensus 318 ---g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (596)
.+.. .|..-|+.+++. |=.+.-...|......+... -...=..+.+-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChH
Confidence 1111 222222222222 22222223333322222210 0001123456688889999
Q ss_pred HHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 392 KTMEVLSDMKSLGLCPNTI---TYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.|..-+++|.+. .+-... .+-.+..+|...|..++|.+.-.-+..
T Consensus 185 AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999999998875 332333 355566788888888888776655544
No 274
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=90.15 E-value=28 Score=36.93 Aligned_cols=162 Identities=10% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (596)
|..-+..+..+++.. ....+.+..+-+..+......++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+.-+.+
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~r 450 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIR 450 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHH
Confidence 444444444333222 44444444443344666677788888888888888888776654421 12334555555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHH
Q 007613 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVG 428 (596)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a---~~~~g~~~~a 428 (596)
+|+......+-+.+.+.....+......++....... +-.+.-++-.-..- ..+.|+..+|
T Consensus 451 a~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~----------------~~~~~L~fla~yreF~~~~~~~~~~~A 514 (566)
T PF07575_consen 451 AGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPM----------------LLSQRLSFLAKYREFYELYDEGDFREA 514 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchh----------------hhhhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 6666555555444443221222122222222211111 01111111111111 1234777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
.+.+-.+.+.++.|...-..-|.++
T Consensus 515 a~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 515 ASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp -------------------------
T ss_pred HHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 7777677777777776655555543
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.11 E-value=11 Score=32.18 Aligned_cols=134 Identities=14% Similarity=0.134 Sum_probs=70.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
+..+.+...+++|+...+..+++.+.+.|++....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3444555666777777777777777777776655544432 23344333332221111 122233333333332
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
+ + ..+..++..+...|++-+|++..+..... +......++++..+.++...-..+++...+.
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 1 24556667777777777777777664322 1222345566666666655555555555443
No 276
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.00 E-value=4.1 Score=30.69 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=51.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 007613 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~ 454 (596)
+.-++.+-++.+....+.|++....+.+.||.+..++..|.++|+-++ +.|. +...|..+++-.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 344666677777777899999999999999999999999999999887 4343 555788887643
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=32 Score=36.69 Aligned_cols=103 Identities=8% Similarity=0.056 Sum_probs=64.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChH
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 109 (596)
++-|++.+.+++|+++-+.....- +- .......++.-+...|++++|-...-+|...+..-|.--+..++..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 444889999999999877665432 21 12222333333455678888888888888778888888777777776654
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (596)
.... -+.......+...|..++..+..
T Consensus 441 ~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 3322 22222112355667777766665
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.17 E-value=13 Score=31.46 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=23.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 104 SSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
+.++.+.+..+++.+.-. .|... .-..-...+.+.|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445555555555555443 22211 1111122334555666666666665543
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.01 E-value=6.9 Score=34.04 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (596)
..+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34666777777777777777777777665444332 2345566666666777666666655543
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.71 E-value=32 Score=35.54 Aligned_cols=366 Identities=10% Similarity=0.032 Sum_probs=194.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhhhHHHHHHHHHHhhCCC------CChHhHHHHHHHHHhcCChH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN------PTLSTFNMLMSVCASSKDSE 109 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~ 109 (596)
+-|..+.+..+|++-+..= |........... .+...|+.+.-++.|+.... -....|...|..-..++++.
T Consensus 91 klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 6789999999999887753 444433333333 33344556666777765431 23456888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---c------CChhHHHHHHHHHHHC---C-CCCCHhhHHHHHHHHHh-c
Q 007613 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK---S------GKVDAMFEVFHEMVNA---G-IEPNVHTYGALIDGCAK-A 175 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~------g~~~~a~~~~~~m~~~---g-~~~~~~~~~~li~~~~~-~ 175 (596)
....++++.++. | ..-|+....-|.+ . ...+++.++-...... + ..+....+..-++--.. .
T Consensus 169 ~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 999999998863 2 2233333333222 1 1222222222111110 0 00011111111110000 0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCCC----CCHHHHHHHHHHHHHcCCh
Q 007613 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVD----PDHITIGALMKACANAGQV 250 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~~~ll~~~~~~g~~ 250 (596)
+..+++.....+. ....-..+-......+....|+.-.... ..++ ++..+|...+.--.+.|+.
T Consensus 245 ~~l~~~~~~l~~~-----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 245 KSLTEEKTILKRI-----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred chhhHHHHHHHHH-----------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 0111111111000 0011112222223333333444333210 0112 3466788888888899999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (596)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (596)
+.+.-+|+...-.- ..-...|--.+.-....|+.+-|..++..-.+--++-.+.+--.-....-..|+.+.|..+++.+
T Consensus 314 ~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 314 SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 99999988875432 12234566666666666888888888776655433322222211122234568999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HHcCCChhHHHHHHHHHHh
Q 007613 331 KNQGISVGIISYSSLMGACSNAKNWQKAL---ELYEHMKSIKLKPTVSTMNALITA-----LCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~ 402 (596)
...- +--...-..-+....+.|..+.+. .++....... -+....+.+.-- +.-.++.+.|..++.++.+
T Consensus 393 ~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 393 ESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred HhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 8874 222233333455566788888887 4444443322 222222222222 2336788999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 007613 403 LGLCPNTITYSILLVACERKDD 424 (596)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~~g~ 424 (596)
. ++++...|..++.-+...+.
T Consensus 470 ~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 470 I-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred c-CCccHHHHHHHHHHHHhCCc
Confidence 5 66677778888877766553
No 281
>PRK09687 putative lyase; Provisional
Probab=88.64 E-value=22 Score=33.64 Aligned_cols=236 Identities=14% Similarity=0.053 Sum_probs=118.4
Q ss_pred CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCH
Q 007613 87 VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNV 162 (596)
Q Consensus 87 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~ 162 (596)
+.++|.......+.++...|.. .+...+..+.. .+|...-...+.+++..|+. +++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 3456666666666666666643 33333333433 34556666666777777653 3566666655333 4566
Q ss_pred hhHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007613 163 HTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (596)
Q Consensus 163 ~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (596)
.+-...+.++...+.. ..+...+...... ++..+-...+.++++.++ +++...+-.+.. .+|..+-
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~VR 176 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGDVR 176 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHHHH
Confidence 6666666666554321 2233333333322 244444455666666665 345555555543 2343444
Q ss_pred HHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 238 GALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (596)
Q Consensus 238 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (596)
...+.++.+.+ ....+...+..+.. .++..+....+.++.+.|+. .|+..+-...+.+ + .....+.++..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ 247 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHh
Confidence 44444444432 12344444444442 33456666666666666663 4444444444432 2 12345556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
.|.. +|...+..+.+.. +|..+-...+.++
T Consensus 248 ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 6663 4666666555532 2444444444433
No 282
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.51 E-value=16 Score=32.83 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=10.5
Q ss_pred hcCCHHHHHHHHHHHHhCCC
Q 007613 351 NAKNWQKALELYEHMKSIKL 370 (596)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~ 370 (596)
..+++.+|.++|+++....+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555554433
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.24 E-value=1.2 Score=26.72 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666655
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.95 E-value=16 Score=31.22 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHH
Q 007613 378 NALITALCDGDQLPKTMEVLSD 399 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~ 399 (596)
..++..+...|++-+|+++.+.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3444455555555555555544
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.55 E-value=17 Score=31.02 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHH-
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALI- 169 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li- 169 (596)
..|..-++ +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-...-.|-.. -...|=
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 356677888888888888776543222 22233445567788888888888876543233222 111111
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 170 -DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 170 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
-.+..+|.++......+.+...+-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 12345677777777666665554333333344555666677888888887777654
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.21 E-value=1.4 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
++.|...|.+.|++++|..+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555554
No 287
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.11 E-value=26 Score=32.76 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 284 DWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-AG-KVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKAL 359 (596)
Q Consensus 284 ~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (596)
...+|+++|+.... ..+.-|..+...++..... .+ ....-.++...+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 2233466666666665554 21 223333344444432 33566777888888999999999988
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH-----HHhCCCCCCHHHHHHH
Q 007613 360 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD-----MKSLGLCPNTITYSIL 415 (596)
Q Consensus 360 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~t~~~l 415 (596)
++++..... +...|...|...|....+.|+..-..++..+ +.+.|+..+...-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 888877654 5566788899999998888887666555544 2344555554444433
No 288
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.05 E-value=35 Score=34.07 Aligned_cols=397 Identities=11% Similarity=0.091 Sum_probs=225.5
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-------C-----------CChHhHHHHHHH
Q 007613 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------N-----------PTLSTFNMLMSV 101 (596)
Q Consensus 40 ~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~-----------~~~~~~~~li~~ 101 (596)
+++.....+....+.. +....++...+-.+.+.+.+++|...|..-. + +|...=+..+..
T Consensus 60 nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~s 137 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHS 137 (549)
T ss_pred hHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHH
Confidence 3444444444444443 3333333333334556788888888775321 1 122223456667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcC--------ChhHHHHHHHH-------HHHC------
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSG--------KVDAMFEVFHE-------MVNA------ 156 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g--------~~~~a~~~~~~-------m~~~------ 156 (596)
+...|++.+++.+++++...=.+ -+..+|+.++-.+++.= ..+-.-+.|+. |...
T Consensus 138 LIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~ 217 (549)
T PF07079_consen 138 LIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYE 217 (549)
T ss_pred HHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHH
Confidence 88899999999999988765433 68889998776666541 11222222222 2111
Q ss_pred CCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--
Q 007613 157 GIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-- 231 (596)
Q Consensus 157 g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 231 (596)
.+.|-......++....-. .+..--.+++......-+.|+-. ....|...+.. +.+++..+.+.+... .+.
T Consensus 218 k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~--~i~~L 293 (549)
T PF07079_consen 218 KFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS--KIEKL 293 (549)
T ss_pred hhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH--hHHHH
Confidence 2344444444444443321 23333445555554444566533 33344444444 455555554443321 111
Q ss_pred --CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCC
Q 007613 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINCCS----QTGDWEFACSVYDDMTKKGV 300 (596)
Q Consensus 232 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~ 300 (596)
.-..++..++....+.++...|.+.+..+.-.+...+. .+-..+.+..+ ...+..+=+.++......++
T Consensus 294 ke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di 373 (549)
T PF07079_consen 294 KEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI 373 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc
Confidence 12457888999999999999999988877655321110 01123333333 12234445666777766654
Q ss_pred CCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCC
Q 007613 301 IPDEVFLSALID---FAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSIK 369 (596)
Q Consensus 301 ~p~~~~~~~li~---~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~ 369 (596)
. .......++. -+-+.|. -++|..+++.+.+-. +-|...-|.+. ..|.. ...+..-.++-+-+.+.|
T Consensus 374 D-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 374 D-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred c-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 2 1222223333 2334455 788999999888763 34444444333 23332 234556666666677788
Q ss_pred CCCCHH----HHHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007613 370 LKPTVS----TMNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (596)
Q Consensus 370 ~~~~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (596)
+.|-.+ .-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-......++++|..++.. +.|+
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n 524 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPN 524 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCc
Confidence 776433 34555544 4578999998877666666 889999999998888899999999999865 4567
Q ss_pred HHHHHHHH
Q 007613 444 LVMFKCII 451 (596)
Q Consensus 444 ~~~~~~li 451 (596)
..++++=+
T Consensus 525 ~~~~dskv 532 (549)
T PF07079_consen 525 ERMRDSKV 532 (549)
T ss_pred hhhHHHHH
Confidence 66666544
No 289
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.00 E-value=22 Score=31.74 Aligned_cols=200 Identities=17% Similarity=0.135 Sum_probs=100.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH-
Q 007613 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN- 277 (596)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 277 (596)
.+......+...+.+..+...+...... .........+......+...++...+...+.........+ .........
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3334444444444444444444443320 0011222333333344444444555555555544432211 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 278 CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (596)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (596)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 55666666666666666543211 0122233333333555667777777777766654221355666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 356 QKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
+.|...+....... |+ ...+..+...+...+..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77877777776542 32 33444444444466667777777777665
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.74 E-value=13 Score=32.45 Aligned_cols=127 Identities=10% Similarity=0.072 Sum_probs=75.4
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-CCChHhHHH-----
Q 007613 28 QLHSYNRLI---RQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNM----- 97 (596)
Q Consensus 28 ~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~----- 97 (596)
....|..++ ..+.. +.....+.+...+. ..........+.......+++++|..-++... .+.-..+..
T Consensus 53 AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 53 ASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 334444444 34444 66666666666552 12233333444556667788888888887644 333333333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007613 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (596)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (596)
|.+.....|.+++|+.+++.....+. .......-.+++...|+-++|+.-|......+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33456777888888888876654432 22233445577788888888888888877764
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.50 E-value=1.3 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 266 KGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666665553
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.22 E-value=2 Score=25.12 Aligned_cols=27 Identities=30% Similarity=0.150 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+|..+..++...|++++|...|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555555544
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.15 E-value=20 Score=30.34 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=42.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
..-.+.++.+++..+++.+.-. .|.... -..-...+.+.|++.+|.++|+++... .|.......|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence 3445667888888888887765 343322 222233457788888888888888765 3343334445444443
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.98 E-value=12 Score=35.16 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
+.++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4445666655555666666666666666666666666666666555443
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.74 E-value=1.8 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555566666666666655554
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.12 E-value=35 Score=32.32 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=88.5
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCC-----
Q 007613 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPN----- 161 (596)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~----- 161 (596)
.+.|+.+.|...+.+..... ..|+. ..|+.-...+.+..+++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777777665432 22322 23444444443333777777766654332 12233
Q ss_pred HhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007613 162 VHTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (596)
Q Consensus 162 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (596)
..+...++.+|...+..+ +|.++.+.+... .|+ ...+..-+..+.+.++.+++.+.+.+|.... .-....+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchH
Confidence 245677788888877654 556666666544 233 4455556677777899999999999998752 2122334
Q ss_pred HHHHHHH---HHcCChhHHHHHHHHHHhcCCCCC
Q 007613 238 GALMKAC---ANAGQVDRAREVYKMIHKYNIKGT 268 (596)
Q Consensus 238 ~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 268 (596)
...+..+ .... ...+...++.+....+.+.
T Consensus 159 ~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 159 DSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 4444443 3322 3344455544444333433
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.04 E-value=21 Score=29.68 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=31.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 104 SSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
..++++++..+++.|.-. .|+ ..++... .+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 367777777777777653 333 2333333 345777888888888887765
No 298
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.39 E-value=12 Score=35.24 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHH
Q 007613 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (596)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (596)
+....+...++..-....+++.+...+-.++..... ..|+. +-.+.+..+. .-++++++.++..=...|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 333444444444444445566666655555432100 01111 1111222222 22455666666665666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
+.+|+.+.+.+++.+|.++.-.|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666555543
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.35 E-value=66 Score=34.85 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=74.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChH
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (596)
+.|.+.|++++|.+-+-+-+. .+.+...+.- +.......+-..+++.+. -.+..--..|+..|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~k-----fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEPSEVIKK-----FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCChHHHHHH-----hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 456699999999998866553 2233322221 223333444444444332 123334467888888888887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
.-.+..+... .|.. ..-....+..+.+.+-.++|.-+-.... .+......++ -..+++++|++.+..+.
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7666655433 2211 1113345555556666666655544332 1333333333 35567777777766653
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.97 E-value=90 Score=35.37 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI----DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
-.++.--+.|.+.+|+.++ .|+...+..+. ..+...+.+++|.-.|...-+. .--+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence 3333344445555554443 34554444443 4444566677776666543221 2345677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVST--MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (596)
-.+|++++|..+..++.. ..+... -..|+.-+...+++-+|-++..+.... |. . .+..+++...+++
T Consensus 976 ~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-~----av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-E----AVALLCKAKEWEE 1044 (1265)
T ss_pred HHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-H----HHHHHhhHhHHHH
Confidence 788888888888877753 223222 256788888899999998888876542 21 1 2333445555666
Q ss_pred HHHHHHH
Q 007613 428 GLMLLSQ 434 (596)
Q Consensus 428 a~~~~~~ 434 (596)
|.++...
T Consensus 1045 Alrva~~ 1051 (1265)
T KOG1920|consen 1045 ALRVASK 1051 (1265)
T ss_pred HHHHHHh
Confidence 6655543
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.67 E-value=2.2 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=9.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHH
Q 007613 161 NVHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A 181 (596)
|..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444443
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.43 E-value=15 Score=32.24 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CCCHHHHHHHHHHHHHcCChhHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQVDRA 253 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a 253 (596)
.|++.|-++...+.--++.....|..-|. ..+.+++.+++....+...+- .+|...+.+|.+.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555554443323333333333332 344555555554444322222 34444455555555555554443
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.74 E-value=3.9 Score=23.65 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+..+...+...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444455555555555555555544
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.04 E-value=3.5 Score=23.86 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
|..+...+.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555443
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.34 E-value=49 Score=34.33 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=53.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhH
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (596)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.... -|..|+-.+...|+-+.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----------d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR-----------DLGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc-----------chhhhhhhhhhcCChhH
Confidence 35566666666554433 34556666666666666666666665543 13445555555565554
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (596)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (596)
...+-....+.|. .|.-..+|...|+++++.+++.+
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444444441 22223345556666666665543
No 306
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.18 E-value=92 Score=33.64 Aligned_cols=164 Identities=10% Similarity=-0.001 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (596)
..++...++...... .+......-+..-...++++.+...+..|....- -...-.-.+..++...|+.++|..+|+.
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555554433222 1223333334444467777777777777654322 1334445556666667777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007613 330 AKNQGISVGIISYSSLMGACSNAKNWQK-----ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (596)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g~~~~-----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (596)
+... .+ -|..|. -.+.|..-. .-..-..+ ..+ .--.-+..+...|...+|...+..+...
T Consensus 372 ~a~~---~~--fYG~LA--a~~Lg~~~~~~~~~~~~~~~~~-----~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~- 436 (644)
T PRK11619 372 LMQQ---RG--FYPMVA--AQRLGEEYPLKIDKAPKPDSAL-----TQG--PEMARVRELMYWNMDNTARSEWANLVAS- 436 (644)
T ss_pred HhcC---CC--cHHHHH--HHHcCCCCCCCCCCCCchhhhh-----ccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 6331 11 121111 111121100 00000000 000 0011234556667777777777776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 405 LCPNTITYSILLVACERKDDVEVGLMLLS 433 (596)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (596)
.+......+.......|..+.+.....
T Consensus 437 --~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 437 --RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 234444445555556666666665544
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.13 E-value=16 Score=27.72 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (596)
-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555555555666677777777777777777777777776655
No 308
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.66 E-value=26 Score=27.11 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=50.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (596)
...+.+||-.+.+.+...+. ....+...-+..+.++|++++|+..=...+.||...|.+|-. .+.|-.+++..-+.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 35678999999999988873 233333333344556788888855444556788888877644 46677777777777
Q ss_pred HHHHcC
Q 007613 117 LVQEAG 122 (596)
Q Consensus 117 ~m~~~g 122 (596)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 676555
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.63 E-value=54 Score=30.70 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
++.....|..+|.+.+|.++.++.+..+.- +...+..++..+...|+--.+.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444455666666676666666666655432 55566666666666666555555555443
No 310
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.38 E-value=90 Score=33.07 Aligned_cols=183 Identities=15% Similarity=0.105 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHH--HHH-HHhcCChhHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhcC-
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTL--ITT-CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKAG- 176 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~l--i~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 176 (596)
...|.+.++...+.|. ........+ ..+ +....+++.|+..|....+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4578888887777662 111111112 222 3455788888888888766 44 3335566666666633
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH--HcCC
Q 007613 177 ----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NAGQ 249 (596)
Q Consensus 177 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~ 249 (596)
+.+.|+.+|.+.-..| .|+....-..+..... ..+...|.++|...... |. ++..-+.+++.... ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CC-hHHHHHHHHHHHhCCCcCCC
Confidence 5667888888777776 3444433333322222 24567788888777654 21 22222211111111 2235
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007613 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 300 (596)
...|..++.+..+.| .+....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 677777777777776 3221222222333333 666666666666665554
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.37 E-value=35 Score=28.39 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (596)
..++++++..+++.|.-.. |........-..++...|++.+|.++|+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 4667777777777666544 33333333334445555666777776666553
No 312
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.26 E-value=35 Score=28.33 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007613 377 MNALITALCDGDQLPKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCI 450 (596)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (596)
.|+++.-....+.+.-.+.+++.+..-. -.-+..+|.+++.+.++..- ---+..+|+.+.+.+.+++..-|.++
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555543210 01244567788877766655 44567777888777778888888888
Q ss_pred HHHHHh
Q 007613 451 IGMCSR 456 (596)
Q Consensus 451 i~~~~~ 456 (596)
|..+.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 877654
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.88 E-value=12 Score=35.55 Aligned_cols=83 Identities=12% Similarity=-0.013 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHhhCC--CC-ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007613 73 SQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (596)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (596)
++|.+++|+..|.... .| |.+++..-..+|.+..++..|..--......+ ..-+..|..-+.+--..|...+|.+-
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAKkD 187 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAKKD 187 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 4455666666555422 23 55555555555555555555544433333221 11122344444444445666666666
Q ss_pred HHHHHHC
Q 007613 150 FHEMVNA 156 (596)
Q Consensus 150 ~~~m~~~ 156 (596)
++..++.
T Consensus 188 ~E~vL~L 194 (536)
T KOG4648|consen 188 CETVLAL 194 (536)
T ss_pred HHHHHhh
Confidence 6666554
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.60 E-value=4.7 Score=24.65 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHH
Q 007613 377 MNALITALCDGDQLPKTMEVLSD 399 (596)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~ 399 (596)
++.|...|...|++++|..++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHH
Confidence 34444444444444444444443
No 315
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.39 E-value=28 Score=26.64 Aligned_cols=85 Identities=11% Similarity=0.166 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
.++|..+-+.+...+-. ...+-..-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+.+..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45565655555543311 22222222334556677777777666553 567776666654 355666666666666
Q ss_pred HHhCCCCCCHHHH
Q 007613 188 MRSKNVKPDRVVF 200 (596)
Q Consensus 188 m~~~g~~p~~~~~ 200 (596)
|..+| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 66665 3443333
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.22 E-value=50 Score=29.48 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=38.7
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
-+..||.+.--+...|+++.|.+.|+...+....-+-...|.-|..| -.|++.-|.+-|...-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 34567777777777788888888887777654322222333333333 446777776665555443
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.15 E-value=5.5 Score=24.32 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555554443
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.54 E-value=1.1e+02 Score=32.98 Aligned_cols=180 Identities=15% Similarity=0.165 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCCCCch--HHHHHHHHHHHh-hhHHHHHHHHHHhhCC----CCChH-----hHHHHHHHHHhcCChHH
Q 007613 43 ECIDLLEDMERKGLLDMD--KVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS-----TFNMLMSVCASSKDSEG 110 (596)
Q Consensus 43 ~A~~~~~~m~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~~~~li~~~~~~g~~~~ 110 (596)
.|+..++-+.+....++. ..++..++.++. .-.+++.|...+.+.. +++.. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 456666666643332322 334444455443 3456788888777642 22211 2234556666665555
Q ss_pred HHHHHHHHHHcC----CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHhhHHHHHHHHH--hcCCHHH
Q 007613 111 AFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCA--KAGQVAK 180 (596)
Q Consensus 111 A~~~~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~ 180 (596)
|...++...+.- ..+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888887765432 11223334444 333333478888888888776532 2444555555555543 3455566
Q ss_pred HHHHHHHHHhCC---------CCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHH
Q 007613 181 AFGAYGIMRSKN---------VKPDRVVFNALITACG--QSGAVDRAFDVLAEM 223 (596)
Q Consensus 181 A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~ 223 (596)
+.+..+++.... ..|...+|..+++.++ ..|+++.+.+.++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666653211 1334566776666544 456666665554443
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.81 E-value=0.83 Score=38.18 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007613 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (596)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (596)
++..+.+.+..+....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556666666666677777765544455667777777777777666666666611 11223455666777777
Q ss_pred HHHHHHHHHHH
Q 007613 425 VEVGLMLLSQA 435 (596)
Q Consensus 425 ~~~a~~~~~~~ 435 (596)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77776666554
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.80 E-value=20 Score=30.93 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 392 KTMEVLSDMKSLGLCPNT-ITYSILLVACERKD----D-------VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g----~-------~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
+|+.-|++.+. +.|+. .++..+..++...+ + +++|...|++... .+|+..+|+.-+.+.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 33444444444 45663 45555555554432 2 3445555555554 678888888877774
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.15 E-value=54 Score=28.77 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=39.3
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007613 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-----ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (596)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (596)
..+...+++++|..-++..... +.| ..+. .|.......|.+++|...++.....+.. ......-.+.+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~----t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ----TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc----chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 3455556666666665554421 111 1121 2233444555555555555554443221 11122223445
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 007613 280 SQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~ 299 (596)
...|+-++|+.-|...++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 55555555555555555443
No 322
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.42 E-value=65 Score=29.39 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLV 118 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m 118 (596)
|..-..+|-...++++|...+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 333334444455555555544443
No 323
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=75.20 E-value=83 Score=30.51 Aligned_cols=166 Identities=14% Similarity=0.038 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-----SVGIIS 341 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~ 341 (596)
.|..+..++-+..++.+++.+-+.-.. .|..| .....-++..+....+.++++++.|+...+... -....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444555555555555555444332 12222 112233344555566667777777776654311 122446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHcCCChhHHHHHHHHHH----hCCCCCC
Q 007613 342 YSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMN-----ALITALCDGDQLPKTMEVLSDMK----SLGLCPN 408 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~ 408 (596)
+..|...|.+..++++|.-+.....+ .++..-..-|. .|.-++...|+..+|.+.-++.. ..|-+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77777778888888877666554432 22111111122 23445666777777776666543 2332222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 409 -TITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 409 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
......+.+.|...|+.+.|+.-++...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234456667778888888877776654
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.11 E-value=1.2e+02 Score=32.20 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhcc
Q 007613 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDG-----CAKAGQVAKAFGAYGIMRS-------KNVKPDRVVFNALITACGQS 210 (596)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 210 (596)
...+.++++...+.| +...-..+..+ +....+.+.|+..|....+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888888765 33333333332 4456789999999988876 44 333555666667664
Q ss_pred C-----CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 007613 211 G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---- 280 (596)
Q Consensus 211 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---- 280 (596)
. +.+.|+.++...-.. + .|+.......+..... ..+...|.++|....+.|.. .++-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~--g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAEL--G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhc--C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 3 567788888877654 2 3444333222222222 23567888999888888743 22222222222
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007613 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (596)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (596)
-..+...|..++++..+.|. |...--...+..+.. ++.+.+...+..+...+.
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 23467788888888888873 332222223333333 677777777766666653
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.06 E-value=1.5 Score=36.68 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=25.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007613 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (596)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (596)
+..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544433445555555555555555455544443
No 326
>PRK09687 putative lyase; Provisional
Probab=74.96 E-value=77 Score=30.02 Aligned_cols=136 Identities=11% Similarity=-0.047 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLM 346 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (596)
+..+-...+.++.+.++ .+++..+-.+... +|...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34444555555555554 3344444444432 23333333333444332 12344444444442 23445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (596)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 419 (596)
.++.+.|+. .|...+-...+. ++ .....+.++.+.|.. +|+..+..+.+. .||...-...+.+|
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 666666653 344333333332 22 122445555555553 455555555542 33544444444444
No 327
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.95 E-value=55 Score=28.31 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007613 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (596)
+++|.+.|++... ..|+..+|..-+..+. .|-+++.++.+++..+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHhhhh
Confidence 5666667777666 5899999998887764 36778888877765443
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.67 E-value=25 Score=31.34 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=26.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
++.+.+.+++.+++....+-++.. +-|..+-..++..+|-.|++++|..-++-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 344445555555555554444432 33444445555555555555555544443
No 329
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.80 E-value=76 Score=28.98 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC--hHhHHHHHHHHHh
Q 007613 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--LSTFNMLMSVCAS 104 (596)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~~~~ 104 (596)
.+....+.+-...+++.|...+.+..+--. .....+|+ .+.++.|.-+.+.+...+ +..|+--...|.+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yE-nnrslfhA--------AKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYE-NNRSLFHA--------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHH-hcccHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444455566777777776666553221 11122222 133444544444443221 2345555566777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CC--CCCCHhhHHHHHHHHHhcCCHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN---AG--IEPNVHTYGALIDGCAKAGQVA 179 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g--~~~~~~~~~~li~~~~~~g~~~ 179 (596)
+|.++.|-..+++.-+. ...-++++|+++|.+... .+ ...-...+...-+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77776666555544321 122233444444433221 00 0011122333445556666666
Q ss_pred HHHHHHHHHHhCC----CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CCCHHHHHHHHHHHHHcCChhHH
Q 007613 180 KAFGAYGIMRSKN----VKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQVDRA 253 (596)
Q Consensus 180 ~A~~~~~~m~~~g----~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a 253 (596)
+|-..|.+-.... -.++ -..|...|-.+....++..|.++++.--+...-. +-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 6655554332110 0111 1234455555666677788888777643321111 22455666666665 34566655
Q ss_pred HHHH
Q 007613 254 REVY 257 (596)
Q Consensus 254 ~~~~ 257 (596)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5544
No 330
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.69 E-value=75 Score=29.67 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=64.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHH
Q 007613 279 CSQTGDWEFACSVYDDMTKKGVIPDEV-------FLSALIDFAGHAGKVEAAFEILQE----AKNQGISVGIISYSSLMG 347 (596)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~li~ 347 (596)
..+.+++++|+..+.++..+|+..|.. +...+...|...|+...-.+.... |.+..-+-......+|+.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 344455555555555555555444332 233444555555554443333322 111121223444555666
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHH----HHhCCCCCCHHH
Q 007613 348 ACSNAK-NWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVLSD----MKSLGLCPNTIT 411 (596)
Q Consensus 348 ~~~~~g-~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t 411 (596)
.+.... .++.-..+.....+...+-+ ...=.-+|..+.+.|++.+|+.+... +.+..-+|+..+
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 554433 34555555444432110111 11224578888999999999887554 344444555444
No 331
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.60 E-value=27 Score=27.99 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
+..+-++.+....+.|++.....-++||.+..++..|.++|+-++.. +.+...+|..+++-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 44555666677779999999999999999999999999999988743 33445577777654
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.63 E-value=33 Score=30.62 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (596)
-++.+.+.+.+.+++...++-.+.. +.|..+-..++..++-.|++++|..-++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3444445555555555554444432 22333333445555555555555544443
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.49 E-value=7.7 Score=22.41 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
|..+...+...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555555544
No 334
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.10 E-value=60 Score=27.03 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSIL 415 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (596)
.|+++.-.+..+++.-...+++.+.... -..+..+|.+++.+..+... ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566665566666666666666553210 02455678888888876665 34567778888887888889999999
Q ss_pred HHHHHhcC
Q 007613 416 LVACERKD 423 (596)
Q Consensus 416 l~a~~~~g 423 (596)
+.+|.+--
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 98887753
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.71 E-value=10 Score=24.04 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 415 LLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
+..+|...|+.+.|+.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666643
No 336
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.95 E-value=1.4e+02 Score=30.66 Aligned_cols=182 Identities=12% Similarity=0.092 Sum_probs=124.7
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 007613 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (596)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (596)
-|-...-+++..+..+.+..-...+-.+|..-| .+-..|..++.+|... ..+.-..+|+++.+..+ .|++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 355667788889999888888889999998865 4667888999999888 56778889998887753 2444455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007613 170 DGCAKAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (596)
.-|-+ ++.+.+...|.+....=++. =...|..+...- ..+.+...++...+... .|...-.+.+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 65555 88888888888876542210 123565555422 34566667776666543 24444455666666778
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007613 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (596)
....++++|++++..+.+.+ ..|..+...++..+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 88899999999999888876 444455445544433
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.47 E-value=52 Score=25.34 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (596)
+..+-++.+....+.|++....+.+.+|.+.+++..|..+|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444555555555555555666666666666655555544
No 338
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.02 E-value=28 Score=23.13 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
+.-++.+.|++++|++..+.+++ ++|+..-...|-.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 44577888888888888888887 66777666666544
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.82 E-value=1.1e+02 Score=28.80 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 007613 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMF 447 (596)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~ 447 (596)
++.....|..+|.+.+|.++-++.... -+.+...+-.++..++..|+--.+.+-++++.+ .|+..+..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 444556788888888888888887764 234556677888888888887667666665542 3666555443
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=67.79 E-value=8.9 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 007613 345 LMGACSNAKNWQKALELY 362 (596)
Q Consensus 345 li~~~~~~g~~~~A~~~~ 362 (596)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.79 E-value=61 Score=32.55 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=79.3
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007613 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (596)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (596)
-...|++-.|-+-+....... +-.|+.....+. .....|.++.+.+.+....+. +.....+...++....+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 344567666654443333322 334554444333 356778888888887765543 2233467778888888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007613 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (596)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (596)
+|..+-..|+...+. +...........-..|-++++...++++...+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999988888877665 55554444444556677888888888876654
No 342
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.65 E-value=67 Score=28.33 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=12.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 007613 277 NCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
.+|.+...+++|+.=|+++++.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 3455555556666656555554
No 343
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.65 E-value=46 Score=24.75 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=16.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (596)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (596)
.|+.+.|.+++..+. .| +..|..++.++...|.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 345555555555554 33 22444455555444443
No 344
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.10 E-value=61 Score=25.22 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
...++|..+.+.+...+. -...+--.-+..+.+.|++++|+. . ......||...|-+|-. .+.|..+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl--~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL--L--PQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH--H--HTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH--h--cccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 345677777777766542 223333333445567777777721 1 11112566666666544 4667777777777
Q ss_pred HHHHhCC
Q 007613 186 GIMRSKN 192 (596)
Q Consensus 186 ~~m~~~g 192 (596)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7676655
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.92 E-value=9.9 Score=21.61 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007613 172 CAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~ 189 (596)
+.+.|++++|.+.|+++.
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 333344444444444333
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=65.43 E-value=19 Score=20.62 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555443
No 347
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=65.42 E-value=1.4e+02 Score=29.15 Aligned_cols=27 Identities=11% Similarity=0.280 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
+|..+...+.+.|+++.|...+..+..
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 444444455555555555555544443
No 348
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.25 E-value=39 Score=27.42 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHH
Q 007613 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84 (596)
Q Consensus 43 ~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 84 (596)
++.++|..|...|+....+.++...+..+...|++++|.++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555554443333444444444444444444444444
No 349
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.50 E-value=1.8e+02 Score=29.66 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=70.2
Q ss_pred HHhcCCHHHHHHHHHHHHH---CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC-----
Q 007613 314 AGHAGKVEAAFEILQEAKN---QGISVG-----IISYSSLMGACSNAKNWQKALELYEHMKS-------IKLKPT----- 373 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~---~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~----- 373 (596)
+.-.|++.+|.+++...-- .|...+ -..+|.|...+.+.|.+..+..+|....+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4456888888877754321 221111 12245565566667777776666666553 344432
Q ss_pred ------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 007613 374 ------VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLML 431 (596)
Q Consensus 374 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~ 431 (596)
..+||+ .-.|...|++-.|.+.|.+.... +..++..|..+..+|.. .|..++....
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~~l~ee~~~s 394 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQKGLLEEGNSS 394 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 233443 23466789999999999887664 66788899999988854 3344444433
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.58 E-value=1.9e+02 Score=29.24 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.2
Q ss_pred HHhcCCHHHHHH
Q 007613 172 CAKAGQVAKAFG 183 (596)
Q Consensus 172 ~~~~g~~~~A~~ 183 (596)
.++.|+.+.+..
T Consensus 75 A~~~g~~~~v~~ 86 (413)
T PHA02875 75 AVEEGDVKAVEE 86 (413)
T ss_pred HHHCCCHHHHHH
Confidence 344455444333
No 351
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.55 E-value=1.5e+02 Score=28.12 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=40.5
Q ss_pred HHHHHhcCCHHHHHHHHHH-HHhCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 276 INCCSQTGDWEFACSVYDD-MTKKGVIPDE----VFLSALIDFAGHAGKVE-AAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~-m~~~~~~p~~----~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
..-..+...+++.....++ |.+.++ |+. ..|+.++++-.-+.+-+ -|.+.++. ..+|.-|+.++
T Consensus 262 ~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af 331 (412)
T KOG2297|consen 262 QEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAF 331 (412)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHH
Confidence 3333444555655555544 555443 454 35777777644332211 22333333 44678888999
Q ss_pred HhcCCHHHHH
Q 007613 350 SNAKNWQKAL 359 (596)
Q Consensus 350 ~~~g~~~~A~ 359 (596)
+..|+.+-..
T Consensus 332 ~s~g~sEL~L 341 (412)
T KOG2297|consen 332 CSQGQSELEL 341 (412)
T ss_pred hcCChHHHHH
Confidence 9998877553
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=61.19 E-value=1.2e+02 Score=26.90 Aligned_cols=72 Identities=8% Similarity=-0.022 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCHHHH
Q 007613 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALITACGQSGAVDRA 216 (596)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a 216 (596)
+.|.+.|-.+...+.--++.....|...|. ..+.+++++++-+..+. +-.+|+..+.+|.+.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 456666666665554445555555555444 45566666666555432 2245666666666666666666655
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.14 E-value=1.2e+02 Score=28.31 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=43.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--
Q 007613 99 MSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-- 174 (596)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 174 (596)
|.+++..+++.+++...-.--+ ..++| .+...-|-.|+|.+....+.++-....+..-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 4566666666666553322221 11232 23333444566666666666666655543222333346555555544
Q ss_pred ---cCCHHHHHHHH
Q 007613 175 ---AGQVAKAFGAY 185 (596)
Q Consensus 175 ---~g~~~~A~~~~ 185 (596)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666554
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.07 E-value=20 Score=22.68 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=7.9
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007613 170 DGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (596)
.+|...|+.+.|..++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33333444444444443333
No 355
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.81 E-value=1.2e+02 Score=26.83 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=50.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC
Q 007613 315 GHAGKVEAAFEILQEAKNQGISV----GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQ 389 (596)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 389 (596)
...|++++|..-|......-.+. ....|..-..++.+.+.++.|+.--...++.+ |+ ......-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhh
Confidence 34455555555555555442111 12234444456667777777777766666543 32 1222223446777788
Q ss_pred hhHHHHHHHHHHhCCCCCCH
Q 007613 390 LPKTMEVLSDMKSLGLCPNT 409 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~ 409 (596)
+++|++-++++.+. .|..
T Consensus 184 ~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 184 YEEALEDYKKILES--DPSR 201 (271)
T ss_pred HHHHHHHHHHHHHh--Ccch
Confidence 88888888888774 4543
No 356
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.56 E-value=54 Score=31.36 Aligned_cols=48 Identities=8% Similarity=-0.132 Sum_probs=23.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (596)
|.+.|.+++|+..+....... +-|.+++..-..+|.+..++..|..--
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 445555555555555444321 224555555555555555554444333
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.08 E-value=2.5e+02 Score=30.26 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 007613 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (596)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (596)
.+|--|.++|++++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4556677788888888777444432 233445566667776654
No 358
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.77 E-value=4.4e+02 Score=32.97 Aligned_cols=118 Identities=13% Similarity=0.049 Sum_probs=68.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 132 TLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
++..+-.+++.+.+|...++.-..... ......+..+...|+..++++....+...-.. .| +...-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 444556678888888888877311100 12233455555588888888877777664211 12 22334445666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 007613 210 SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKM 259 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (596)
.|++..|...|+.+.+. .|+ ..+++-++......|.++...-..+-
T Consensus 1462 ~g~~~da~~Cye~~~q~----~p~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQK----DPDKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred hccHHHHHHHHHHhhcC----CCccccchhhHHHhhhcccchhHHHhhhcc
Confidence 78888888888888753 444 44555555555555555555544433
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.10 E-value=1.3e+02 Score=28.21 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=21.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----cCCChhHHHHHH
Q 007613 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-----DGDQLPKTMEVL 397 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~ 397 (596)
.|+|.|....+.++-..-.+..-..+...|.+++..|. =.|.+++|.++.
T Consensus 127 LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 35555555554444444443211222233444333332 245555555444
No 360
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=58.24 E-value=89 Score=24.49 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCH
Q 007613 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK--DDVEVGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~g~~p~~ 444 (596)
..++..|...|+.++|..-+.++.... -.......++..+... ..-+....++..+.+.+.-+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~ 72 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKE 72 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHH
Confidence 445666777778888877777653210 0111222333333332 2233445566666665554443
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.11 E-value=1.9e+02 Score=28.14 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHH
Q 007613 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ---SGAVDRAFDVL 220 (596)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~a~~~~ 220 (596)
+.-+.++++.++.. +.+...+..++..+.+..+.+...+.++++.... +-+...|...|..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666655552 3455566666666666666677677777776552 2245556555544332 12344444444
Q ss_pred HHH
Q 007613 221 AEM 223 (596)
Q Consensus 221 ~~~ 223 (596)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 443
No 362
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=57.86 E-value=2.1e+02 Score=28.73 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
...+|+-|...|+..+..+.++.+-
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHcC
Confidence 4578888888888888888877653
No 363
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.52 E-value=1.7e+02 Score=27.58 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFA 288 (596)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a 288 (596)
.++..+...++..+++.+++..-.++++..... +...|...|..+|....+.|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 344444455555555555555555555544333 2233444455555555555554433
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.27 E-value=1.7e+02 Score=27.39 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 007613 126 DCKLYTTLITTCAKSGKVDAMFEVF 150 (596)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~ 150 (596)
|+.....+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566677777777877777777655
No 365
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.10 E-value=62 Score=24.37 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=24.7
Q ss_pred CcccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (596)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~ 55 (596)
..|.+..........++..|++++|++.+-++.+.+
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 356677777777777778888888888887777765
No 366
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.19 E-value=1.8e+02 Score=26.93 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 142 KVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
.+++|+.-|++..+..-+.. -.+...+|..+.+.|++++....|.+|.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45555555555554321111 1223344555566666666666655554
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.59 E-value=49 Score=24.10 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=22.0
Q ss_pred cCChHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCChhHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKA-D-CKLYTTLITTCAKSGKVDAMFE 148 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~-~-~~~~~~li~~~~~~g~~~~a~~ 148 (596)
.++.++|+..|....+.-..+ + -.++..++.+|+..|+++++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665555432221 1 1245555666666666655544
No 368
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.30 E-value=18 Score=29.36 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=18.5
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
.|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 45556667777777777766663 4555544
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=52.01 E-value=2.9e+02 Score=28.49 Aligned_cols=179 Identities=10% Similarity=0.075 Sum_probs=97.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH-
Q 007613 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI- 237 (596)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 237 (596)
..|....-+++..+..+..+.-+..+..+|..-| -+...|..++.+|... ..+.-..+++++.+- .-|....
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~----dfnDvv~~ 135 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY----DFNDVVIG 135 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh----cchhHHHH
Confidence 4456666677777777777777777777777664 2556677777777776 445556666665542 2232333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Q 007613 238 GALMKACANAGQVDRAREVYKMIHKYNIKG-----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALI 311 (596)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li 311 (596)
..|...|- .++.+.+...|.++..+-++. -...|..++..- ..+.+..+.+..++... |..--.+.+.-+-
T Consensus 136 ReLa~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 136 RELADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 33333333 366677777776665543221 123454444321 23455555555555432 2222334445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
.-|....++++|++++..+.+.. .-|...-..++.-
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 56666667777777777666654 3344444444443
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.85 E-value=51 Score=21.29 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007613 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (596)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (596)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666666666666666655555543
No 371
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.52 E-value=2.2e+02 Score=28.50 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH--CC----C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVN--AG----I-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~--~g----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
...|++.++-.|++..|+++++.+.- .+ + .-.+.++-.+.-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544321 11 1 2234455556666666777777777776654
No 372
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.88 E-value=2.9e+02 Score=28.30 Aligned_cols=243 Identities=10% Similarity=0.118 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc------CCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQS------GAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDR 252 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~ 252 (596)
....+|++.... -|+...|+..|..|... ..+...+.+++..... .+..++ ...|..+...++.....
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~-~~l~~~~~~~ys~~~l~~~t~~~~-- 374 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHEL-KLLSECLYKQYSVLLLCLNTLNEA-- 374 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHhccchH--
Confidence 344666666543 44556666666665433 1344445555555443 233333 34455555555554432
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHH--HHHH
Q 007613 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEF-ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAA--FEIL 327 (596)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a--~~~~ 327 (596)
...-..+...++..+...|..-+...... .+++- -.++|......-..+....|++.. .|+ ++.. ..++
T Consensus 375 -r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 375 -REVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred -hHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 22222222223344455555554444422 12221 112222333222222223333333 122 1111 1223
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCChhHHHHHHHHHHh-C
Q 007613 328 QEAKNQGISVGIIS-YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC--DGDQLPKTMEVLSDMKS-L 403 (596)
Q Consensus 328 ~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~-~ 403 (596)
......+ .++..+ -+.+++-+.+.|-..+|+.++..+.... +|+...|..+|..-. ...+..-+.+.++.|.. .
T Consensus 449 ~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 3333333 344333 3567777788888888888888887654 567777777665321 12226666677777654 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
| .|+..|.-.+.--...|..+.+-.++.++.+
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 4 5666666666555566766666666655544
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.74 E-value=21 Score=28.96 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=21.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 007613 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (596)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (596)
+.|.-.+|-.+|.+|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345566778888888888877764 7777654
No 374
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.49 E-value=2.5e+02 Score=26.99 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHh
Q 007613 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV---FNALITACGQSGAVDRAFDVLAEMN 224 (596)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~ 224 (596)
.|.-+..+.|+..+|.+.|+++.+. .|-... ...|+.++....-+.+...++.+..
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444567777777777776554 222222 2346666666655555555554443
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.39 E-value=1.3e+02 Score=24.28 Aligned_cols=46 Identities=13% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
..+.++.+...++.|++......+.+|.+.+++..|..+|+-++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555556666777777777777777777777777777666544
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.24 E-value=94 Score=23.20 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=16.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (596)
.|+.+.|.+++..+. +| +..|...++++...|.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 355555555555554 32 12344455555444443
No 377
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.19 E-value=69 Score=20.66 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=10.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHH
Q 007613 141 GKVDAMFEVFHEMVNAGIEPNVHTYG 166 (596)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (596)
|-++++..++++|.+.|+.-+...+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33334444444444444333333333
No 378
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=49.12 E-value=35 Score=18.24 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 166 GALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
..+...+...++++.|...|++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444444444444444433
No 379
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.36 E-value=2.9e+02 Score=27.53 Aligned_cols=62 Identities=16% Similarity=0.036 Sum_probs=33.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007613 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (596)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (596)
.-.|++...-.|+.....+.++.+...-.+-.|...+---+.-+|.-.+++.+|.+.|-.+.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666776666666666655444444432211234445555666667766665543
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.99 E-value=81 Score=23.01 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHHHh
Q 007613 283 GDWEFACSVYDDMTK 297 (596)
Q Consensus 283 g~~~~a~~~~~~m~~ 297 (596)
.+.++|+..|+..++
T Consensus 20 ~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 20 NETQQALQKWRKALE 34 (80)
T ss_pred chHHHHHHHHHHHHh
Confidence 334444444444443
No 381
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.21 E-value=2e+02 Score=30.51 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 309 ALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQ------KALELYEHMKSIKLKPTVSTMNAL 380 (596)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 380 (596)
+++.+|..+|++..+.++++.....+ -+.-...+|..|+-..+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888888888888888888877643 2333456777777788888653 3444444443 45566777766
Q ss_pred HHHHHc
Q 007613 381 ITALCD 386 (596)
Q Consensus 381 i~~~~~ 386 (596)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 382
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.93 E-value=77 Score=21.03 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=14.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007613 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (596)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (596)
.-++.+.|++++|.+..+.+.+ +.|+..-
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 3455556666666666665555 3555443
No 383
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.80 E-value=5e+02 Score=28.88 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=48.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHh-------hHHHHHHHH-HhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 007613 138 AKSGKVDAMFEVFHEMVNAGIEPNVH-------TYGALIDGC-AKAGQVAKAFGAYGIMRSK----NVKPDRVVFNALIT 205 (596)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~-------~~~~li~~~-~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 205 (596)
....++++|..+..++...--.|+.. .|++|-... ...|+++.|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777777777765432122211 233332222 2356777777666655432 22334555666666
Q ss_pred HHhccCCHHHHHHHHHHHh
Q 007613 206 ACGQSGAVDRAFDVLAEMN 224 (596)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~ 224 (596)
+..-.|++++|..+..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 506 AAHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHHhchHHHHHHHHHHHH
Confidence 6666777777777665544
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.65 E-value=7.7e+02 Score=31.07 Aligned_cols=62 Identities=16% Similarity=-0.007 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (596)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (596)
..+|-...+.....|.++.|...+-...+.+ . +..+--...-....|+...|..++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567777778888999999988777776665 2 334556667778899999999999888753
No 385
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.31 E-value=66 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 007613 168 LIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~ 187 (596)
+|.+|...|++++|.+...+
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444333
No 386
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.71 E-value=3.3e+02 Score=26.45 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (596)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (596)
+.-+.++++..+.+ +.+...+..++..+.+..+.++..+.++++...... +...|...|...
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHH
Confidence 34455566655553 455666666677777777777777777777665432 455565555543
No 387
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.38 E-value=1.7e+02 Score=22.99 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888888766
No 388
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.41 E-value=1e+02 Score=24.13 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=19.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 007613 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (596)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (596)
+++.+.+|...++|+++.+.|.++| +.+...-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~ 99 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAK 99 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4455556666677777777776666 44443333
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.85 E-value=1e+02 Score=32.00 Aligned_cols=86 Identities=10% Similarity=-0.005 Sum_probs=37.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (596)
.|+...|...+.........-..+....|.+...+.|...+|..++.+..... ...+.++-.+.++|....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35555555544443322111111222333444444444445555544444332 22333444555555555555555555
Q ss_pred HHHHHhC
Q 007613 185 YGIMRSK 191 (596)
Q Consensus 185 ~~~m~~~ 191 (596)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 5555443
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.29 E-value=1.4e+02 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568888888888888888888888888887776
No 391
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.22 E-value=4.2e+02 Score=27.02 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=86.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHH
Q 007613 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLM 99 (596)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li 99 (596)
.......++..-...|++..|.+-+....++. ..|.... +...+....|.++.+...+... ......+...++
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~---l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~ 364 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQ---LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL 364 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH---HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH
Confidence 45556666666678899988866555554443 2233333 3344556678889888887543 345666788889
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007613 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (596)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (596)
+..-+.|++++|..+-+-|....++ ++.......-..-..|-++++...|.++....
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999999999999988876654 33333333333445677888888888877543
No 392
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.15 E-value=4e+02 Score=26.78 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=16.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCCHH
Q 007613 138 AKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAKAGQVA 179 (596)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~ 179 (596)
++.|+.+-+ +.+.+.|..++... ..+.+...+..|+.+
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~ 49 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE 49 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 345555433 33334555554322 233344445556554
No 393
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.02 E-value=98 Score=25.07 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLR 116 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~ 116 (596)
..|......+-..|++.+|.++|+
T Consensus 100 lfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 100 LFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555666777777777765
No 394
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.46 E-value=2.4e+02 Score=30.01 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCHH------HHHHHHHHHhhCCCCCCCCHHHHH
Q 007613 167 ALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVD------RAFDVLAEMNAEVHPVDPDHITIG 238 (596)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 238 (596)
+|+.+|..+|++.++.++++.+... |-+.-...+|..|+...+.|.++ .|.+++++. .+.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a-----~ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA-----RLNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh-----hcCCcchHHH
Confidence 8899999999999999999988754 33333567888888888888764 344444443 2567788888
Q ss_pred HHHHHHHH
Q 007613 239 ALMKACAN 246 (596)
Q Consensus 239 ~ll~~~~~ 246 (596)
.++.+-..
T Consensus 108 ll~~~sln 115 (1117)
T COG5108 108 LLCQASLN 115 (1117)
T ss_pred HHHHhhcC
Confidence 77765544
No 395
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.32 E-value=2.5e+02 Score=29.87 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
+.|+..+|.+.+-.+.+....|...-...|.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 347778888877777777766665544444443
No 396
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.28 E-value=2.1e+02 Score=27.26 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=49.3
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----------cCCHHHH
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----------SGAVDRA 216 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~a 216 (596)
.++|+.+...++.|.-.++.-+.-.+.+.=.+..++.+|+.+.... .-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4677777777778877777777667777777888888888877532 225555555443 4777777
Q ss_pred HHHHHHH
Q 007613 217 FDVLAEM 223 (596)
Q Consensus 217 ~~~~~~~ 223 (596)
+++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 7777654
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.12 E-value=1.1e+02 Score=26.97 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=15.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
.|++.+|..++..+...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555544444444
No 398
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.75 E-value=6.4e+02 Score=28.39 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=34.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----HHHH-HHHHhhhHHHHHHHHHHhhCC
Q 007613 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----HARF-FNVCKSQKAIKEAFRFFKLVP 88 (596)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~~l-~~~~~~~~~~~~A~~~~~~~~ 88 (596)
-...|....++++|+.+.+...+.+ |..... +... +-..-.++++++|.+.|.++.
T Consensus 313 qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 313 QIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 3455677888999999887776654 322211 1111 111335688899999998764
No 399
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.42 E-value=6.2e+02 Score=28.16 Aligned_cols=78 Identities=9% Similarity=0.136 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCC
Q 007613 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (596)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (596)
.-..|+.++..|+++.|+++-..-++ .-..+...-+.++.+.+++..|.+.+.++ ..+|..+.--+....+
T Consensus 361 ~R~vWk~yLd~g~y~kAL~~ar~~p~-----~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 361 ARDVWKTYLDKGEFDKALEIARTRPD-----ALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQ 431 (911)
T ss_pred hHHHHHHHHhcchHHHHHHhccCCHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCC
Confidence 34579999999999999987543211 11122223344566677888888888776 3345555555555555
Q ss_pred hHHHHHHH
Q 007613 108 SEGAFQVL 115 (596)
Q Consensus 108 ~~~A~~~~ 115 (596)
.+ ++..|
T Consensus 432 ~~-~L~~~ 438 (911)
T KOG2034|consen 432 ER-ALRTF 438 (911)
T ss_pred HH-HHHHH
Confidence 55 44443
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.02 E-value=79 Score=29.89 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 124 (596)
-|+..|+...+.||+++|+.++++..+.|+.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3556666666667777777777666666654
No 401
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.89 E-value=63 Score=30.55 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007613 377 MNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (596)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (596)
|+..|..-.+.|++++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555544
No 402
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.56 E-value=63 Score=22.57 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007613 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (596)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (596)
..++.++..+++..-+++++..+++..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444444
No 403
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.27 E-value=3.6e+02 Score=25.13 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=78.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---------CCChHhHHHHHHHHHhc
Q 007613 37 RQGRISECIDLLEDMERKGLL--DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---------NPTLSTFNMLMSVCASS 105 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~ 105 (596)
+...+++|+.-|++..+...- .|..-..-.++.+..+.+++++....|+++. .-+..+.|+++...+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 566999999999998865421 3444444445555556666777766666542 12344566666665555
Q ss_pred CChHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-------CHhhHHHHH
Q 007613 106 KDSEGAFQVLRLVQEA-GLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNAG----IEP-------NVHTYGALI 169 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~-g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-------~~~~~~~li 169 (596)
.+.+.-...++.-.+. .-..+. .|-+.|...|...+.+..-.+++.++.+.. -+. -...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5554444444322110 000011 122344555555555555555555554321 011 123455555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007613 170 DGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (596)
.+|....+-..-..+|++..
T Consensus 199 QmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhcccHHHHHHHHHHH
Confidence 55555555555555555543
No 404
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.57 E-value=3.5e+02 Score=24.77 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=47.9
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHH---HHH-HHHh--cCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 007613 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSI---LLV-ACER--KDDVEVGLMLLSQAKEDGVIPNL---VMFKCIIGMCS 455 (596)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~-a~~~--~g~~~~a~~~~~~~~~~g~~p~~---~~~~~li~~~~ 455 (596)
+..+++.+|+++|++.....+..+..-|+. ++. ++|+ ..+.-.+...+++-.+ +.|+. .-+.-|-+++.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCCcccccHHHHHHHHHHH
Confidence 467889999999999877655544433332 222 2233 2455556666666665 33432 23333333322
Q ss_pred h-hHHHHHHhhhhhhhccCCCcc
Q 007613 456 R-RYEKARTLNEHVLSFNSGRPQ 477 (596)
Q Consensus 456 ~-~~~~a~~~~~~~~~~~~~~~~ 477 (596)
- .-.+...+.+....|++.++-
T Consensus 243 aieE~d~e~fte~vkefDsisrL 265 (288)
T KOG1586|consen 243 AIEEQDIEKFTEVVKEFDSISRL 265 (288)
T ss_pred HHhhhhHHHHHHHHHhhhccchH
Confidence 1 112234445566666666543
No 405
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.46 E-value=1.5e+02 Score=21.67 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=14.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 007613 133 LITTCAKSGKVDAMFEVFHEMVNAG 157 (596)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g 157 (596)
+++.+.+|...++|+++++.|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555555666666666666555
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.16 E-value=4.7e+02 Score=26.13 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (596)
..+.-+.+.|..+|+++.|++.|.+...--.. -....|-.+|......|++.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45677788888888888888888885442111 0122334444444555666666555555443
No 407
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.14 E-value=2e+02 Score=23.95 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=10.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007613 275 AINCCSQTGDWEFACSVYDDMTKKGV 300 (596)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~ 300 (596)
++..+.+.+..-.|.++++++.+.++
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 33333333333444444444444333
No 408
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.03 E-value=4.7e+02 Score=26.11 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 235 ITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
..+.-+...|..+|+++.|.+.|.+...... ......|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566778889999999999999988655421 11123344445555555666665555554443
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.48 E-value=2.7e+02 Score=23.20 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=17.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (596)
++..+.+.+..-.|.++++++.+.+...+..|...-++.+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33333333333444444444444433333333333333343333
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.46 E-value=7.2e+02 Score=28.02 Aligned_cols=110 Identities=12% Similarity=0.174 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC--CCC-CHhhHHHHHHHHHhcCC-----------------HHHHHHHHHH--
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAG--IEP-NVHTYGALIDGCAKAGQ-----------------VAKAFGAYGI-- 187 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~-~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~-- 187 (596)
|..|+..|...|..++|+++|.+..... ..+ -...+-.++.-..+.+. .+.+.++|..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 7778888888888888888888776521 000 11122234443333333 3333444433
Q ss_pred -HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 007613 188 -MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (596)
Q Consensus 188 -m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (596)
-....+.+ ..+-.|......+-+...++.+... .-.++..-.+.++..|+..
T Consensus 587 ~~~~~sis~------~~Vl~~l~~~~~~l~I~YLE~li~~--~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 587 KQEAESISR------DDVLNYLKSKEPKLLIPYLEHLISD--NRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hhhhccCCH------HHHHHHhhhhCcchhHHHHHHHhHh--ccccchHHHHHHHHHHHHH
Confidence 00111111 1233466777888888999888764 2345666777788777654
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.39 E-value=72 Score=21.97 Aligned_cols=33 Identities=18% Similarity=0.450 Sum_probs=24.3
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERK 54 (596)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~ 54 (596)
.|++.-.+.+...|+..|++++|.+.++++.+.
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 355666677788888899999998888887653
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.31 E-value=2.9e+02 Score=24.12 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=10.4
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007613 348 ACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~ 367 (596)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555543
No 413
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=33.81 E-value=1.2e+02 Score=21.60 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=27.7
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch
Q 007613 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60 (596)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~ 60 (596)
.+....+..|..+++...++.+..-+......+..|++
T Consensus 27 ~~~k~~v~~W~~~L~d~~ye~v~~al~~~i~~~kfPPs 64 (71)
T PF11417_consen 27 TDSKETVDLWYDMLKDYDYEIVMKALKKHIATNKFPPS 64 (71)
T ss_dssp STHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-SS---
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcC
Confidence 44566789999999999999999999888777655554
No 414
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.70 E-value=1.4e+02 Score=31.00 Aligned_cols=88 Identities=17% Similarity=0.065 Sum_probs=53.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007613 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (596)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (596)
...|+...|...+.........-..+....|.....+.|...+|-.++.+..... .....++-.+.+++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3457777777766665543322223334445556666667777777776665443 233455666777777777788888
Q ss_pred HHHHHHHhC
Q 007613 395 EVLSDMKSL 403 (596)
Q Consensus 395 ~~~~~m~~~ 403 (596)
+.|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 888776654
No 415
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=4e+02 Score=24.61 Aligned_cols=91 Identities=14% Similarity=0.043 Sum_probs=49.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc------CCCCchHH-------HHHHHHHH---HhhhHHHHHHHHHHhhCC---CCC
Q 007613 31 SYNRLIRQGRISECIDLLEDMERK------GLLDMDKV-------YHARFFNV---CKSQKAIKEAFRFFKLVP---NPT 91 (596)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~------~~~~~~~~-------~~~~l~~~---~~~~~~~~~A~~~~~~~~---~~~ 91 (596)
--|.|.+.|++.||..-|.+.+-. ...|+... ...+++.+ ....|++-++++....+. +.|
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n 263 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN 263 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch
Confidence 457788999999998888765321 00122222 22222222 233455555555444432 345
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 121 (596)
+..|-.-.++.+..-+.++|..=|....+.
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 556666666666666666666666666553
No 416
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.87 E-value=3.4e+02 Score=23.77 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=11.1
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007613 313 FAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~ 332 (596)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555544
No 417
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.83 E-value=3.9e+02 Score=24.48 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007613 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (596)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (596)
|.+.....++..|.. +++++|.+++.++.+.|+.|...+
T Consensus 237 PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii 275 (333)
T KOG0991|consen 237 PHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDII 275 (333)
T ss_pred CChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHH
Confidence 555555555555443 456666666666666666665543
No 418
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=32.38 E-value=6.7e+02 Score=27.06 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHH-
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-------VAKAFGAYGIMRSKNVKPDRV- 198 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~- 198 (596)
..+|. +|--|.|+|++++|.++..+.... .......+-..+..|....+ -++...-|++........|+.
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 34554 555677999999999998554432 34555667788888876432 245566666666553322433
Q ss_pred --HHHHHHHHHhcc-CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC-----------hhHHHHHHHHHHhcC
Q 007613 199 --VFNALITACGQS-GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-----------VDRAREVYKMIHKYN 264 (596)
Q Consensus 199 --~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----------~~~a~~~~~~~~~~~ 264 (596)
.|..+ ..|--. .... .+..+..-|--+=-.+.+... +++..+.....-+..
T Consensus 190 ~AvY~il-g~cD~~~~~~~--------------~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~ 254 (613)
T PF04097_consen 190 RAVYKIL-GRCDLSRRHLP--------------EVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESH 254 (613)
T ss_dssp HHHHHHH-HT--CCC-S-T--------------TC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGG
T ss_pred HHHHHHH-hcCCccccchH--------------HHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhh
Confidence 23322 111110 0010 011111111111111111111 111122222222222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHH
Q 007613 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYS 343 (596)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 343 (596)
+.+ ....-.....+.-.|+++.|++.+.+ ..+...|.+.+...+..|. -+......-..+.... -.+...-+.
T Consensus 255 F~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g---LL~~~~~~~~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 255 FNA-GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG---LLRVSDSSSAPLLSVDPGDPPPLNFA 328 (613)
T ss_dssp CTT-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HH
T ss_pred ccc-chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC---CCCCCCccccceeeecCCCCCCcCHH
Confidence 222 11122334455678999999988877 2222335555555554332 2222221112222211 011125577
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhC
Q 007613 344 SLMGACSN---AKNWQKALELYEHMKSI 368 (596)
Q Consensus 344 ~li~~~~~---~g~~~~A~~~~~~m~~~ 368 (596)
.||..|.+ ..+...|.+.|--+...
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 88888875 46788888888777653
No 419
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.07 E-value=1.5e+02 Score=20.76 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (596)
.|....++.++..+++..-.+.++..+.+..+.| .-+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3556677888888888888899999999998888 45677777777766654
No 420
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=31.78 E-value=24 Score=35.52 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=33.1
Q ss_pred ccchhHHHHHHHHHHhCCCCCccccCCCCeeecccCCcccccc
Q 007613 548 GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590 (596)
Q Consensus 548 g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 590 (596)
||. ++.+-++++|.+.|.+|.+|...|.++|++--++..+-|
T Consensus 419 GR~-QEvM~VLee~mr~g~ipe~PVYlDGMI~EatAIhtaYPE 460 (637)
T COG1782 419 GRS-QEVMIVLEEAMRKGLIPEVPVYLDGMIWEATAIHTAYPE 460 (637)
T ss_pred ccc-ceehhHHHHHHhcCCCCCCceeeeeeeeehhhhhhcCHH
Confidence 453 356788999999999999999999999977666554433
No 421
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.56 E-value=4.5e+02 Score=24.80 Aligned_cols=18 Identities=33% Similarity=0.230 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 007613 424 DVEVGLMLLSQAKEDGVI 441 (596)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~ 441 (596)
+...+...+......|..
T Consensus 252 ~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 252 DKKQALEWLQKACELGFD 269 (292)
T ss_pred CHHHHHHHHHHHHHcCCh
Confidence 555555555555554443
No 422
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.12 E-value=3.6e+02 Score=23.80 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHH
Q 007613 318 GKVEAAFEILQEAK 331 (596)
Q Consensus 318 g~~~~a~~~~~~~~ 331 (596)
|+++.|.+.++-|.
T Consensus 135 ~~~~~Ae~~~~~ME 148 (204)
T COG2178 135 GSFEEAERFLKFME 148 (204)
T ss_pred ccHHHHHHHHHHHH
Confidence 44555555444444
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.84 E-value=2.3e+02 Score=21.29 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=11.3
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 007613 134 ITTCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~ 154 (596)
.......|+.++|.+.+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666555544
No 424
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=30.74 E-value=4.8e+02 Score=24.92 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=36.2
Q ss_pred hhHHHHHH-HHHHhcCCCCC---HHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 250 VDRAREVY-KMIHKYNIKGT---PEVYTIAINCCSQTGDWE-FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (596)
Q Consensus 250 ~~~a~~~~-~~~~~~~~~~~---~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (596)
+++..... +.|.+.++|.. ..+|..++++---+.+-+ -|.+.++. ..+|.-|+.+++..|+.+..+
T Consensus 271 ~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 271 VKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 44444333 45555554332 235777777654432221 12222222 346888999999999977654
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.35 E-value=2.4e+02 Score=26.06 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMER 53 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~ 53 (596)
+.....+...|+..+|+.-|+.-..
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3344556688999999988876543
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.13 E-value=2.4e+02 Score=21.22 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=14.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~ 190 (596)
+...+...|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455566777777777776653
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.04 E-value=5.7e+02 Score=25.53 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=29.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 007613 279 CSQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGH--AGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~a~~~~~~~~~~ 333 (596)
+.+.+++..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44666777777777776665 333332 33344444432 34566677666665543
No 428
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.91 E-value=2.3e+02 Score=21.28 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCC
Q 007613 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (596)
Q Consensus 46 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (596)
.+++.+.+.|++..+-. . .+-......+.+.++++.++.....+|..+..++-..+.
T Consensus 24 ~v~~~L~~~gvlt~~~~-~----~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 24 ELLIHLLQKDILTDSMA-E----SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHcCCCCHHHH-H----HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 36666677776533211 1 111122334666666666666666666666666654443
No 429
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=29.66 E-value=5.1e+02 Score=24.86 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH
Q 007613 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (596)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 75 (596)
..+..|..+..+++..+.++.+++....+ |.=...|.+....+.+.|
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSLA--PFWLDGQRLSAQALERLG 147 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHCC
Confidence 45567777888888888888888887765 433344445555555544
No 430
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=29.31 E-value=7.5e+02 Score=26.65 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=15.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007613 417 VACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~ 437 (596)
..+...|+.++|.....+...
T Consensus 585 ~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 585 DSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHcCcHHHHHHHHHHHHH
Confidence 346678888888887776543
No 431
>PRK10941 hypothetical protein; Provisional
Probab=29.16 E-value=4.9e+02 Score=24.49 Aligned_cols=57 Identities=14% Similarity=-0.011 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
|-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3344455555555555555554432 22233333334445555555555544444443
No 432
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.05 E-value=5.5e+02 Score=24.99 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHC---CCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH-HHHHH
Q 007613 135 TTCAKSGKVDAMFEVFHEMVNA---GIEPNVHTY--GALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRV-VFNAL 203 (596)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-~~~~l 203 (596)
...-+.++.++|++.++++.+. --.|+.+.| +.+.+.+...|+..++.+.+++..+ .|++|++. .|..+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3334445666666666665532 113444443 3344455566777777777666665 45665443 34444
Q ss_pred HHHHhc-cCCHHH
Q 007613 204 ITACGQ-SGAVDR 215 (596)
Q Consensus 204 i~~~~~-~g~~~~ 215 (596)
-+-|.+ .|++..
T Consensus 163 ssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 163 SSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHhHHH
Confidence 444433 344443
No 433
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=28.83 E-value=1.1e+02 Score=16.78 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHH
Q 007613 250 VDRAREVYKMIHKYNIKGTPEVYTIA 275 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (596)
.+.+..+|+++.... +.+...|...
T Consensus 3 ~~~~r~i~e~~l~~~-~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKF-PKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHC-CCChHHHHHH
Confidence 444444555444432 2333444433
No 434
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=28.79 E-value=2.5e+02 Score=22.97 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=27.9
Q ss_pred CcccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007613 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL 57 (596)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~ 57 (596)
.+++++-.++..| ++..|+++.|+++.+-.++.|..
T Consensus 45 g~qd~Vl~~~mvW--~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 45 GAQDDVLMTVMVW--LFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred CCcCchHHhhHhh--hhcccCHHHHHHHHHHHHHcCCC
Confidence 4556666666666 66899999999999999988864
No 435
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=28.36 E-value=3.6e+02 Score=25.70 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=36.6
Q ss_pred CCCCCcccChhhHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 007613 16 GKHANYAHDVSEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (596)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (596)
.+..+.|-++...+...+.-. +.|+.+.|..+|+...... |.+..+...++.+.-..+++-+|-.+|-+
T Consensus 104 t~te~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlala--P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 104 TQTENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALA--PTNPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred hhcccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcC--CCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 334444555555544444433 5777777777777766665 55555544444444444444455444443
No 436
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.15 E-value=3e+02 Score=21.60 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (596)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444444444444444433
No 437
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.99 E-value=1.2e+02 Score=30.78 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC---hHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 108 (596)
.|.+.+.+.++.|+.++.+.++.+ |....+.+.-.....+.+++..|+.=+.+..+-+ ...|---..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 455667778888888888887776 4444443333233333344444443333332222 11222222334444555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 137 (596)
.+|+..|+.... +.|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 566666555543 345555444444443
No 438
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.66 E-value=9.8e+02 Score=27.46 Aligned_cols=196 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHH---
Q 007613 239 ALMKACANAGQVDRAREVYKMI---HKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPDEVFLSALI--- 311 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li--- 311 (596)
..+.-+...+++.+|..+.++- ...=..-++..|-.=+..+.+. ++.+---.++..+.+.++ ....|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--cccccccccccc
Q ss_pred ---------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 312 ---------DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK--NWQKALELYEHMKSIKLKPTVSTMNAL 380 (596)
Q Consensus 312 ---------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (596)
......++.....+.+...... ......-...++.+|++.+ ++++|+.+..++.+.
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~------------ 843 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE------------ 843 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc------------
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007613 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC----------ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (596)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----------~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (596)
+...|.+.++.+.- +.+-...|..-|..| ..+.|..|=+-.++++.+ ++|+. -..-
T Consensus 844 --------~~~~ae~alkyl~f--LvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~--l~~~~--rry~ 909 (928)
T PF04762_consen 844 --------DPESAEEALKYLCF--LVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQK--LPPLY--RRYK 909 (928)
T ss_pred --------ChHHHHHHHhHhee--eccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHh--CChhh--eeee
Q ss_pred HHHHHhhHHHHHH
Q 007613 451 IGMCSRRYEKART 463 (596)
Q Consensus 451 i~~~~~~~~~a~~ 463 (596)
||.+.++|++|..
T Consensus 910 ID~hLkRy~kAL~ 922 (928)
T PF04762_consen 910 IDDHLKRYEKALR 922 (928)
T ss_pred HhhhhCCHHHHHH
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.64 E-value=3.1e+02 Score=25.31 Aligned_cols=56 Identities=21% Similarity=0.111 Sum_probs=30.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 379 ALITALCDGDQLPKTMEVLSDMKS----LG-LCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (596)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (596)
.|..-|.+.|++++|+++|+.+.. .| ..+...+...+..++.+.|+.+....+.=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345556667777777777766532 22 112333444555566666776665554433
No 440
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.58 E-value=5.3e+02 Score=24.38 Aligned_cols=212 Identities=15% Similarity=0.104 Sum_probs=105.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH------HHHHHHHHhhhHHHHH-------HHHHHhhCCC-CCh
Q 007613 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKE-------AFRFFKLVPN-PTL 92 (596)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~~l~~~~~~~~~~~~-------A~~~~~~~~~-~~~ 92 (596)
..+...|.+++..++++|++.+.++...|........ ..-+..++.+.|+... ...++..... ..+
T Consensus 5 ~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~ 84 (421)
T COG5159 5 SSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKIT 84 (421)
T ss_pred chHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHH
Confidence 3467789999999999999999999998864332221 2233444444333222 2222222222 233
Q ss_pred HhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCCH
Q 007613 93 STFNMLMSVCASS-KDSEGAFQVLRLVQEAGLKAD-----CKLYTTLITTCAKSGKVDAMFEVFHEM----VNAGIEPNV 162 (596)
Q Consensus 93 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~~~~ 162 (596)
....+++..+... ..++.-+.+.....+...+.+ ...-..++..+.+.|++.+|+.+...+ .+..-+++.
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 3444555544332 334444555444443221111 112345677788888888887665443 333334443
Q ss_pred hhHHHH-HHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHhhCCCCCCCCHH
Q 007613 163 HTYGAL-IDGCAKAGQVAKAFGAYGIMRS----KNVKPDRVVFNALITAC--GQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (596)
Q Consensus 163 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 235 (596)
.+...+ -..|-+-.++.++..-+...+. .-++|....---|+++- |...++..|...|-+..+.......|..
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~k 244 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVK 244 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHH
Confidence 332222 1234444444444433333321 12445444444555553 3345677777777776654333334443
Q ss_pred HHH
Q 007613 236 TIG 238 (596)
Q Consensus 236 ~~~ 238 (596)
.+.
T Consensus 245 Ac~ 247 (421)
T COG5159 245 ACV 247 (421)
T ss_pred HHH
Confidence 333
No 441
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.41 E-value=2.6e+02 Score=20.73 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHH
Q 007613 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (596)
Q Consensus 46 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 110 (596)
.+++.+.+.|++..+..- .+-......+.|.++++.++.....+|.++..++-..|...-
T Consensus 20 ~v~~~L~~~~Vlt~~~~e-----~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIE-----EIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHhcCCCCHHHHH-----HHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 466666666654322111 111222335666666666666666666666666666554443
No 442
>PRK09857 putative transposase; Provisional
Probab=27.33 E-value=5.3e+02 Score=24.61 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (596)
+..++.-..+.++.++..++++.+.+. .+......-++..-+.+.|.-++++++-.+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444444556666566666655543 122233333455555555655666666666666665433
No 443
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.31 E-value=2.6e+02 Score=22.03 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (596)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 137 (596)
++++-+.++...++|+++.+.|.+.| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45667778888999999999999998 55655555444443
No 444
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.91 E-value=3.4e+02 Score=21.93 Aligned_cols=42 Identities=12% Similarity=0.312 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 007613 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFH 151 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 151 (596)
.+.++|..|...|+.-. ..-|......+.+.|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554332 3345555555555555555555554
No 445
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.68 E-value=5.8e+02 Score=24.47 Aligned_cols=190 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcC-Chh---HHHHH-HHH---------HHHCCCCCC--
Q 007613 99 MSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSG-KVD---AMFEV-FHE---------MVNAGIEPN-- 161 (596)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g-~~~---~a~~~-~~~---------m~~~g~~~~-- 161 (596)
+-++++.|..+ ...+++.+... .-+++...|..++..+.... .+. ..... |.. +.+.|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HhhHHHHHHHH-HhcCC-----HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC
Q 007613 162 VHTYGALIDGC-AKAGQ-----VAKAFGAYGIMRSKNV----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (596)
Q Consensus 162 ~~~~~~li~~~-~~~g~-----~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (596)
......+++.. ..... .+.|.+.|++....+. ..+...-..++....+.|..+.-..+++.... .
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-----~ 198 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-----S 198 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-----T
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-----c
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 007613 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC-SQTGDWEFACSVYDD 294 (596)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~ 294 (596)
++......++.+.+...+.+...++++.+...+..++......+.... ....-.+.+.+.+..
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 446
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=25.86 E-value=7.1e+02 Score=25.28 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (596)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (596)
...|+.-|...|...+|...++++--- +---.+.+.+++.+..+.|+-...+.+++...+.|+ .|-+.|-..|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 345677788888888888777765310 112355677888888888887766667666666554 344555555444
No 447
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=25.67 E-value=6.2e+02 Score=24.51 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
..++..+...+.+.|.++.|...+..+.+.+... .....-.-...+-..|+..+|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666666677777777776666666432111 122222334445556666667666666554
No 448
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=25.62 E-value=5.6e+02 Score=23.95 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQE 120 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 120 (596)
..+.+++.+.+.+....|..+.+.+..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 355677777777777777777776653
No 449
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=24.76 E-value=5.4e+02 Score=23.52 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCcccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007613 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL 57 (596)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~ 57 (596)
..+++++-.++..| ++..|+++.|+++.+-.++.|..
T Consensus 79 ~~~qd~Vl~~~mvW--~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 79 AGYQDDVLMTVMVW--RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred CCCCCCeeeEeeee--eeeccCHHHHHHHHHHHHHcCCC
Confidence 35566666666667 67999999999999999999874
No 450
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=24.63 E-value=6.1e+02 Score=24.06 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=19.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 162 VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
...+..+...|++.++.+.+.++.++..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4566677777777777777776665554
No 451
>PRK10941 hypothetical protein; Provisional
Probab=24.46 E-value=6e+02 Score=23.92 Aligned_cols=57 Identities=14% Similarity=-0.000 Sum_probs=28.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3344455555555555555555543 33444444444445555555555554444433
No 452
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.31 E-value=8.4e+02 Score=25.57 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 007613 168 LIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m 188 (596)
|+.-|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444455555555555554444
No 453
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.97 E-value=1.2e+02 Score=17.75 Aligned_cols=24 Identities=8% Similarity=0.064 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007613 424 DVEVGLMLLSQAKEDGVIPNLVMFKC 449 (596)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~~~~~ 449 (596)
.++.|+.+|++.+. +.|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHH
Confidence 46778888888876 4577666543
No 454
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=23.78 E-value=1.1e+03 Score=26.53 Aligned_cols=191 Identities=15% Similarity=0.089 Sum_probs=106.6
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 007613 245 ANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAIN-CCSQTGDWEFACSVYDDMTKK----GVIPDEVFLSALID 312 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~ 312 (596)
....++++|..+..++...-..|+. ..|+++-. .....|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567899999988877654222221 13444322 234568889999888776543 23345667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HH--HHHHHhcCCH--HHHHHHHHHHHhCC--CC----CCHHHHHH
Q 007613 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYS---SL--MGACSNAKNW--QKALELYEHMKSIK--LK----PTVSTMNA 379 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~g~~--~~A~~~~~~m~~~~--~~----~~~~~~~~ 379 (596)
+..-.|++++|..+.+...+..-.-+...+. .+ ...+...|+. .+....|....... -+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999988776653223333332 22 2234556633 33333444333210 01 12334455
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 380 LITALCDGDQLPKTMEVLSDMKSLG--LCPNTI--TY--SILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~--t~--~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
+..++.+ .+.+..-...-.+.| ..|... .+ ..|.......|+++.|.....++...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5555554 333332222221111 223322 22 25667778899999999999888754
No 455
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.77 E-value=7.4e+02 Score=24.74 Aligned_cols=54 Identities=20% Similarity=0.111 Sum_probs=40.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 007613 313 FAGHAGKVEAAFEILQEAKNQGISVGII--SYSSLMGAC--SNAKNWQKALELYEHMKS 367 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~--~~~g~~~~A~~~~~~m~~ 367 (596)
.+.+.+++..|.+++..+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345789999999999999987 555554 455555555 357788999999998875
No 456
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.75 E-value=9.6e+02 Score=26.30 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 286 EFACSVYDDMT-KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 286 ~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (596)
++....+.... ..|+..+......++... .|++..+..+++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 44444444433 456666666666666543 4778888888776654
No 457
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.49 E-value=2.9e+02 Score=19.85 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
+.+.|..++..+.... +.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3455666666655443 45567777766655443
No 458
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.45 E-value=36 Score=32.59 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 007613 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEV 149 (596)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~ 149 (596)
.|.++.|+..|.... ++....|.--.+++.+.++...|.+=++...+. .||. .-|-.--.+....|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHHH
Confidence 355666666665432 233344444455556666666666655555443 3332 2333333334445666666666
Q ss_pred HHHHHHCCCCCCHhh
Q 007613 150 FHEMVNAGIEPNVHT 164 (596)
Q Consensus 150 ~~~m~~~g~~~~~~~ 164 (596)
|....+.++.+....
T Consensus 205 l~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 205 LALACKLDYDEANSA 219 (377)
T ss_pred HHHHHhccccHHHHH
Confidence 666666655444433
No 459
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.12 E-value=7.8e+02 Score=24.80 Aligned_cols=63 Identities=16% Similarity=0.037 Sum_probs=32.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCCCC----CC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007613 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHP----VD-PDHITIGALMKACANAGQVDRAREVYKMIH 261 (596)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (596)
+...|++.++-.|++..|+++++.+.-...+ +. -...++--+.-+|.-.+++.+|.+.|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777776654321111 00 112233334445555566666666665543
No 460
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.90 E-value=8e+02 Score=24.81 Aligned_cols=42 Identities=17% Similarity=-0.044 Sum_probs=23.8
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 272 YTIAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (596)
Q Consensus 272 ~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (596)
+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344444444 36777777777777777766554433333333
No 461
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.53 E-value=6.8e+02 Score=23.84 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (596)
++..+.+.++.....+.+..+. ....-...+..+...|++..|++++.+... +...+-...|-.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~----------~l~~l~~~~c~~ 167 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ----------LLEELKGYSCVR 167 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------HHHhcccchHHH
Q ss_pred CChhHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 248 GQVDRAREVYKMIHKY--------NIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (596)
.-.....+....+.+. -...|+..|..+..+|.-.|+...+.+-+..
T Consensus 168 ~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 168 HLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 462
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=22.48 E-value=2.8e+02 Score=28.19 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 314 AGHAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
+...+.++.|..++.++++.. ||-. .|..=..++.+.+++..|..=+....+
T Consensus 14 ~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 334455555555555555543 3222 222222445555555555554444443
No 463
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=7.2e+02 Score=24.11 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH
Q 007613 163 HTYGALIDGCAKAGQVAKAFGAYGIMRS----KNVKPDRVVFN 201 (596)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~ 201 (596)
..+-....-||+-|+-+.|++.+++..+ .|.+.|++-+.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~ 147 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYK 147 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHH
Confidence 4455666778888888888877766543 35555655444
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.39 E-value=4.8e+02 Score=22.44 Aligned_cols=59 Identities=8% Similarity=0.056 Sum_probs=27.4
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 007613 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (596)
Q Consensus 119 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (596)
.+.|+..+..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-+..+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344444433322 33333333444455566666665555444444444444555555543
No 465
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=21.90 E-value=7.1e+02 Score=24.35 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007613 214 DRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (596)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (596)
+++..++.++... -|+ ..-|..+.......|.++.++.+|+.....|..|-...-.++++.+-
T Consensus 120 eei~~~L~~li~~----IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN----IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3555555555543 233 23456666777777777777777777777777766555555555443
No 466
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.85 E-value=7.4e+02 Score=24.03 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHH-HHHcCCChhHHHHHHHHHHhCCCCCCH----H
Q 007613 340 ISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALIT-ALCDGDQLPKTMEVLSDMKSLGLCPNT----I 410 (596)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 410 (596)
..+-....-|++.|+-+.|.+.+.... ..|.+.|+..+..=+. .|..+.-..+-++..+.+.+.|-..+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 344556667788888887777766544 3455566555443222 233444455666666666666654443 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+|..+- |....++.+|-.+|-....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 343332 3344566666666655543
No 467
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.85 E-value=6.4e+02 Score=23.29 Aligned_cols=113 Identities=18% Similarity=0.110 Sum_probs=53.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 007613 249 QVDRAREVYKMIHKYNIKGTP-EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEI 326 (596)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~ 326 (596)
.++.|..-|.+.... .|+. .-|+.=+-++.+..+++.+..=-++.++. .||.+- ...+.........+++|+..
T Consensus 25 ~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 445555544444433 3433 23444555566666666655544444432 344332 22333344555666667666
Q ss_pred HHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 327 LQEAKN----QGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 327 ~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
+++... ..+++-......|..+=-+.=.+.+..++.+..
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 665532 233344445555554444444444455544443
No 468
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=21.75 E-value=7.9e+02 Score=24.33 Aligned_cols=212 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred cccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHH
Q 007613 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (596)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 100 (596)
+|.+++.-+..-..+.++|+.+.|.+++++..- .....++..+.....+ ......-++--..-|...|-++.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf----~~e~~~~~~F~~~~~~---~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALF----AFERAFHPSFSPFRSN---LTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHhhhhhcc---cccCccccCCccccchHHHHHHHH
Q ss_pred ---HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCC------HhhHHHHHH
Q 007613 101 ---VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA-KSGKVDAMFEVFHEMVNAGIEPN------VHTYGALID 170 (596)
Q Consensus 101 ---~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~ 170 (596)
.+.+.|-+..|+++.+.+......-|+.....+|+.|+ +.++++--+++.+..... ...+ -..|+..+.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~-~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK-CYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh-hhhhhhhhCccHHHHHHHH
Q ss_pred HHHhcCC--------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHH
Q 007613 171 GCAKAGQ--------------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (596)
Q Consensus 171 ~~~~~g~--------------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (596)
.+...+. .+.|...+.+.... =+.+...|+..+ .-..+.+..-............+....
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKL--GISPDSSVSNHPHFSPSSWSSEPPSDS 261 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHh--ccccchhhhcCCCCcccccccCCchhH
Q ss_pred HHHHHHHHHH
Q 007613 237 IGALMKACAN 246 (596)
Q Consensus 237 ~~~ll~~~~~ 246 (596)
...++..|..
T Consensus 262 ~~ll~~lYv~ 271 (360)
T PF04910_consen 262 LKLLTELYVE 271 (360)
T ss_pred HHHHHHHHHH
No 469
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=21.63 E-value=7.7e+02 Score=24.14 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007613 390 LPKTMEVLSDMKSLGLCPNTI----TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (596)
.++.+.++.++... .|+.. -|.++.......|.++..+.+|++++..|..|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45777777777763 46643 367777888888999999999999999999988888888888754
No 470
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=21.39 E-value=2.3e+02 Score=20.33 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
-.|+.+.+.+++++..+.|..|.......+..+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~ 45 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPA 45 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356666777777777766666666666655555
No 471
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=21.36 E-value=7.5e+02 Score=23.88 Aligned_cols=93 Identities=13% Similarity=0.190 Sum_probs=57.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007613 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (596)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (596)
-.-..+.|+..|...+..++.. ..|++.+|+-+++.+...|-.-+...-+.++. |+.
T Consensus 198 ~~Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~---------------------GvV 254 (346)
T KOG0989|consen 198 EKIASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKRITTSLVNEELA---------------------GVV 254 (346)
T ss_pred HHHHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcccchHHHHHHHh---------------------ccC
Confidence 3344566788888888777643 47889999999888876443333222222222 555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007613 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (596)
|+...-.. + -.+..+++.+..+..+++.+.|..|-.
T Consensus 255 p~~~l~~l-l-e~a~S~d~~~~v~~~Rei~~sg~~~~~ 290 (346)
T KOG0989|consen 255 PDEKLLDL-L-ELALSADTPNTVKRVREIMRSGYSPLQ 290 (346)
T ss_pred CHHHHHHH-H-HHHHccChHHHHHHHHHHHHhccCHHH
Confidence 55443322 2 234667788888888888877776643
No 472
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.07 E-value=6.5e+02 Score=23.09 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHH
Q 007613 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVN 155 (596)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~ 155 (596)
+.+.+-+.++++++...+..+...+...+..--+.|-.+|-. .|....+++++..+.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 445566667777777777777776655565555555555422 2344455555555443
No 473
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=6.7e+02 Score=23.17 Aligned_cols=79 Identities=18% Similarity=0.082 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCCHHHHHH
Q 007613 141 GKVDAMFEVFHEMVNAGIEPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQSGAVDRAFD 218 (596)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~ 218 (596)
.+++.|..-|.+.+.. .|+. .-|+.-+-++.+..+++.+..--.+.++. .||.+--. .+..+......+++|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3445555544443332 3444 33344445555555555555444444432 34433222 23334444455555555
Q ss_pred HHHHH
Q 007613 219 VLAEM 223 (596)
Q Consensus 219 ~~~~~ 223 (596)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 55544
No 474
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.78 E-value=79 Score=30.43 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=22.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (596)
.|.++.|++.|...+... ++....|..-.+.+.+.++...|++=++....
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc
Confidence 344455555554444432 33333344444444444444444444444443
No 475
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=20.64 E-value=1.5e+02 Score=20.54 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=29.4
Q ss_pred hHHHhhCCCccccccccccccccccccchhHHHHHHHHHHhCCCCCcccc
Q 007613 523 RLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF 572 (596)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~~ 572 (596)
.+...-|+.++-.. -.++.-++..++|...|+++...|-+|...|
T Consensus 18 ~~~~~Tgmn~~~s~-----~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 18 AFSAQTGMNAEYSQ-----MCLEDNNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred HHHHHHCCCHHHHH-----HHHHHcCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 33444566554321 1334447777899999999998888887654
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.18 E-value=3.1e+02 Score=21.50 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=13.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007613 418 ACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (596)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (596)
.....+..-.|.++++.+.+.+...+..
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~ 36 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLA 36 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHH
Confidence 3333344444555555555554443433
No 477
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=20.17 E-value=6.7e+02 Score=22.84 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007613 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (596)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (596)
+.+...-+|.|+--|.-...+.+|...|..-..... ..|..+++ .-|....+.|+.++|++....+.-.-+.-|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Q ss_pred HHHHHHH----HHhcCCHHHHHHHHHH
Q 007613 412 YSILLVA----CERKDDVEVGLMLLSQ 434 (596)
Q Consensus 412 ~~~ll~a----~~~~g~~~~a~~~~~~ 434 (596)
+-.|..- ..+.|..++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.02 E-value=4.8e+02 Score=22.42 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=31.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 007613 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (596)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (596)
.+.|++.+..- ..++..+...++.-.|.++++.+.+.+...+..|.---+..+.+.|-..
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34455444332 2344444444555566666666666555555555445556666666543
Done!