Query 007614
Match_columns 596
No_of_seqs 294 out of 1736
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 13:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.5E-52 5.3E-57 445.2 52.1 429 138-590 13-451 (455)
2 PRK10189 MATE family multidrug 100.0 2E-47 4.3E-52 411.2 54.6 434 138-593 25-473 (478)
3 PRK00187 multidrug efflux prot 100.0 4.7E-47 1E-51 408.1 50.7 433 137-592 5-456 (464)
4 PRK09575 vmrA multidrug efflux 100.0 7.1E-46 1.5E-50 398.2 51.3 423 135-579 5-435 (453)
5 PRK10367 DNA-damage-inducible 100.0 1.1E-45 2.4E-50 393.9 51.4 413 139-578 6-429 (441)
6 PRK01766 multidrug efflux prot 100.0 1.3E-44 2.9E-49 389.8 49.6 429 138-590 8-450 (456)
7 TIGR01695 mviN integral membra 100.0 1.4E-35 3.1E-40 323.8 51.4 415 144-581 2-429 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 2.4E-33 5.2E-38 305.2 48.5 406 145-579 2-433 (488)
9 KOG1347 Uncharacterized membra 100.0 7.6E-35 1.6E-39 308.3 27.6 429 138-591 24-461 (473)
10 TIGR00797 matE putative efflux 100.0 9.2E-33 2E-37 286.5 40.8 334 150-505 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 5.9E-32 1.3E-36 287.9 45.7 401 144-578 3-410 (416)
12 COG0728 MviN Uncharacterized m 100.0 4.8E-31 1E-35 277.0 51.1 422 141-581 6-438 (518)
13 PF03023 MVIN: MviN-like prote 100.0 2.1E-30 4.5E-35 276.9 48.3 389 172-582 5-405 (451)
14 PRK10459 colanic acid exporter 100.0 2.1E-25 4.6E-30 242.9 46.8 397 140-577 3-402 (492)
15 COG2244 RfbX Membrane protein 99.9 2.4E-22 5.1E-27 218.4 43.3 387 140-564 4-396 (480)
16 PRK10189 MATE family multidrug 99.8 7.4E-19 1.6E-23 189.6 27.9 201 378-578 27-235 (478)
17 COG0534 NorM Na+-driven multid 99.8 9.4E-19 2E-23 187.2 26.8 207 375-581 12-222 (455)
18 PRK00187 multidrug efflux prot 99.8 1.8E-18 3.9E-23 186.4 27.4 205 374-579 4-214 (464)
19 PRK10367 DNA-damage-inducible 99.8 2.2E-18 4.7E-23 184.2 27.6 205 375-579 4-211 (441)
20 PRK09575 vmrA multidrug efflux 99.8 6.5E-18 1.4E-22 181.7 27.2 205 376-580 8-215 (453)
21 PRK01766 multidrug efflux prot 99.8 9.8E-18 2.1E-22 180.9 27.3 205 375-579 7-217 (456)
22 TIGR01695 mviN integral membra 99.7 3.9E-15 8.4E-20 162.8 31.8 210 137-367 218-429 (502)
23 PF01943 Polysacc_synt: Polysa 99.7 2.5E-14 5.4E-19 142.9 32.5 269 145-446 2-272 (273)
24 TIGR00797 matE putative efflux 99.7 6.7E-15 1.5E-19 152.6 26.4 192 388-579 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.7 3.5E-14 7.5E-19 152.1 30.5 211 137-368 193-405 (451)
26 COG0728 MviN Uncharacterized m 99.6 8.9E-13 1.9E-17 139.5 34.3 234 138-394 228-463 (518)
27 PF01554 MatE: MatE; InterPro 99.6 6.8E-16 1.5E-20 141.8 7.5 160 388-547 1-161 (162)
28 TIGR02900 spore_V_B stage V sp 99.6 2.2E-13 4.7E-18 148.4 28.1 204 138-367 221-435 (488)
29 PF01554 MatE: MatE; InterPro 99.6 1.2E-15 2.6E-20 140.2 7.2 161 150-332 1-162 (162)
30 PRK10459 colanic acid exporter 99.6 8E-12 1.7E-16 136.3 33.9 202 138-366 203-405 (492)
31 PF13440 Polysacc_synt_3: Poly 99.5 3.1E-11 6.8E-16 119.1 31.0 247 160-446 2-251 (251)
32 PRK15099 O-antigen translocase 99.5 7.4E-12 1.6E-16 133.5 23.2 202 137-366 210-412 (416)
33 COG2244 RfbX Membrane protein 99.4 8.3E-11 1.8E-15 127.9 26.2 199 138-363 209-408 (480)
34 KOG2864 Nuclear division RFT1 99.1 1.1E-06 2.4E-11 89.3 33.3 415 139-580 5-449 (530)
35 PF04506 Rft-1: Rft protein; 98.9 1.6E-06 3.4E-11 94.2 30.4 282 298-579 151-469 (549)
36 KOG1347 Uncharacterized membra 98.8 1.4E-07 3.1E-12 100.7 18.5 202 376-578 24-228 (473)
37 PF07260 ANKH: Progressive ank 98.7 3.9E-05 8.5E-10 75.1 28.1 259 137-423 6-284 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 9.1E-06 2E-10 72.9 17.8 81 286-368 2-82 (146)
39 PF04506 Rft-1: Rft protein; 98.2 0.00032 7E-09 76.4 23.9 216 140-368 251-472 (549)
40 PF01943 Polysacc_synt: Polysa 98.0 0.0017 3.6E-08 64.4 23.7 186 383-579 2-190 (273)
41 PF14667 Polysacc_synt_C: Poly 98.0 3.9E-05 8.5E-10 68.8 9.0 80 502-581 2-81 (146)
42 PF13440 Polysacc_synt_3: Poly 97.9 0.0037 7.9E-08 61.2 22.3 163 402-578 7-171 (251)
43 KOG2864 Nuclear division RFT1 97.9 0.0094 2E-07 61.4 24.8 210 141-370 238-453 (530)
44 COG4267 Predicted membrane pro 97.6 0.092 2E-06 53.0 34.7 343 185-571 67-437 (467)
45 PF07260 ANKH: Progressive ank 96.7 0.43 9.3E-06 47.5 21.0 151 377-537 8-167 (345)
46 COG4267 Predicted membrane pro 87.7 36 0.00079 35.0 19.6 131 431-575 76-206 (467)
47 PF05977 MFS_3: Transmembrane 60.5 2.7E+02 0.0058 30.7 38.7 50 144-193 12-63 (524)
48 PF06570 DUF1129: Protein of u 52.0 2.1E+02 0.0046 27.0 11.4 7 559-565 181-187 (206)
49 KOG1289 Amino acid transporter 47.0 1.6E+02 0.0036 32.0 10.3 44 228-271 276-320 (550)
50 PF05975 EcsB: Bacterial ABC t 46.1 3.7E+02 0.0081 28.1 13.3 38 450-487 88-125 (386)
51 PF04505 Dispanin: Interferon- 44.8 1.1E+02 0.0023 24.2 6.7 37 436-472 37-73 (82)
52 PF06808 DctM: DctM-like trans 41.9 4.5E+02 0.0098 27.9 17.0 81 373-474 203-283 (416)
53 PF04306 DUF456: Protein of un 38.8 2.7E+02 0.0059 24.5 10.7 23 378-400 102-124 (140)
54 TIGR01299 synapt_SV2 synaptic 38.4 6.8E+02 0.015 28.9 17.9 6 165-170 182-187 (742)
55 PF13347 MFS_2: MFS/sugar tran 38.1 5E+02 0.011 27.3 15.2 22 519-540 281-302 (428)
56 PF01595 DUF21: Domain of unkn 30.8 4.1E+02 0.0088 24.0 14.7 53 439-491 102-154 (183)
57 PTZ00370 STEVOR; Provisional 30.3 1.8E+02 0.004 28.8 6.9 34 557-590 258-292 (296)
58 PF05975 EcsB: Bacterial ABC t 27.6 7.3E+02 0.016 25.9 15.3 35 234-268 90-124 (386)
59 PF03904 DUF334: Domain of unk 24.8 3.3E+02 0.0072 26.0 7.3 63 234-297 143-212 (230)
60 TIGR01478 STEVOR variant surfa 23.7 1E+02 0.0023 30.4 4.0 32 557-588 262-294 (295)
61 PF06609 TRI12: Fungal trichot 23.5 1.1E+03 0.023 26.5 36.1 31 462-492 315-345 (599)
62 PRK08633 2-acyl-glycerophospho 22.6 1.4E+03 0.03 27.6 38.1 26 299-324 125-150 (1146)
63 COG4536 CorB Putative Mg2+ and 22.4 5.3E+02 0.011 26.9 8.7 96 150-275 62-158 (423)
64 PF01102 Glycophorin_A: Glycop 21.9 1.4E+02 0.003 25.7 4.0 23 555-577 66-88 (122)
65 PF01102 Glycophorin_A: Glycop 21.7 1.3E+02 0.0029 25.8 3.8 26 342-367 67-92 (122)
66 PF04235 DUF418: Protein of un 21.1 5.9E+02 0.013 22.6 15.1 28 451-478 9-36 (163)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.5e-52 Score=445.25 Aligned_cols=429 Identities=28% Similarity=0.431 Sum_probs=397.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhh
Q 007614 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (596)
Q Consensus 138 ~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (596)
+...|+++++++|++++++++.+++++|++++||+|++++++.++++++.+++..+ ..|+..+.+++++|++|++|
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~-~~gl~~g~~~liaq~~Ga~~--- 88 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAI-FIGLGTGTTVLVAQAIGAGD--- 88 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHcCCc---
Confidence 34689999999999999999999999999999999999999999999999999865 45899999999999999887
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHH
Q 007614 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (596)
+++.++...+.++++++++++.+++.+++.++++.+++.++| +.+.+.+|+++..++.|+..
T Consensus 89 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~~~~~ 150 (455)
T COG0534 89 ----------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGAPFAL 150 (455)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998777 89999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh-cc-CChhHHHHHHHHHHHHHHHHHHHHHhhccc--c-C--
Q 007614 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-CQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVV--L-M-- 370 (596)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~-~~-~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~--~-~-- 370 (596)
++.++.+++|+.||++++++.+++++++|+++|++|+++ ++ +|+.|+|+||++++++.+++++++++++++ . .
T Consensus 151 ~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~ 230 (455)
T COG0534 151 LSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK 230 (455)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhh
Confidence 999999999999999999999999999999999999998 57 999999999999999999999999977653 1 1
Q ss_pred -CCCccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007614 371 -PPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSK 449 (596)
Q Consensus 371 -~~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~ 449 (596)
..+++++.+|++++.|+|..++.+.+...+.+.+.+++++|++.+|+|+++.++.++.++++.|++++.++++++++|+
T Consensus 231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2256667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchH
Q 007614 450 GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFR 529 (596)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~ 529 (596)
+|++++|+..+.++++++.+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+++||.||+|
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHhccc-CChhHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 007614 530 YAACSMMLVG-AMSSTFLLYAPRA-TGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTD 590 (596)
Q Consensus 530 ~~~~~~~~~~-l~~~~l~~~l~~~-~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~~~w~~~~~~ 590 (596)
.+++.+.+.. .+.+++.+.+... +|..|+|+++.++.++..+...+++ ++++|+....+
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 451 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRL--RRGRWRRKAVA 451 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Confidence 9988766643 2345555555555 9999999999999999999999986 55667665544
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2e-47 Score=411.19 Aligned_cols=434 Identities=22% Similarity=0.267 Sum_probs=385.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhh
Q 007614 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (596)
Q Consensus 138 ~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (596)
.+..|+++++++|.++++++..+.+++|+.++|++|++++|++++++++.++... +..|+..+.+++++|++|+++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~-~~~gl~~g~~~lvsq~~Ga~~--- 100 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMA-FFAAIDLGTTVVVAFSLGKRD--- 100 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCC---
Confidence 3458999999999999999999999999999999999999999999999877764 455899999999999999997
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHH
Q 007614 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (596)
++++++.+++++.++++++++.+++.+++.++++.+++...|+|+.+.+..|+++..++.|+..
T Consensus 101 ----------------~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~ 164 (478)
T PRK10189 101 ----------------RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAA 164 (478)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999532334599999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhc----cCChhHHHHHHHHHHHHHHHHHHHHHhhc-cccCCC
Q 007614 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC----QLGMPGAAISTVVSQYIVAVTMIWFLNKK-VVLMPP 372 (596)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~----~~Gv~Gaaiat~is~~~~~~~~~~~l~~~-~~~~~~ 372 (596)
+...+++++|+.||++.+++..++..++|++++++|++.. ++|+.|+++|+.+++++..++.++++.++ +...+.
T Consensus 165 ~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
T PRK10189 165 ITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRI 244 (478)
T ss_pred HHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccee
Confidence 9999999999999999999999999999999999999863 79999999999999999998887766543 211111
Q ss_pred -------CccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007614 373 -------KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIAS 445 (596)
Q Consensus 373 -------~~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~ 445 (596)
++++..+|+++|.|.|..++.+...+...+.+.+++++|+.++|+|+++.++.++.+++..|++++.++++++
T Consensus 245 ~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~ 324 (478)
T PRK10189 245 SLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGT 324 (478)
T ss_pred eeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1244568999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhc
Q 007614 446 YVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGV 525 (596)
Q Consensus 446 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~ 525 (596)
++|++|++++|+..+.+.++++++++.++++++++++++.++|++|+|+.+.+..++++.++..++++++.+..++++|.
T Consensus 325 ~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~ 404 (478)
T PRK10189 325 RLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGA 404 (478)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHH-HHHHHHHHH--hcccCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccC
Q 007614 526 SDFRYAACSMMLVG-AMSSTFLLY--APRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEG 593 (596)
Q Consensus 526 g~~~~~~~~~~~~~-l~~~~l~~~--l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~~~w~~~~~~~~~ 593 (596)
||++.+++...+.. ++.+++.+. ...++|+.|+|++..+++++..++.++++ ++++|++...+.|.
T Consensus 405 G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~--~~~~W~~~~~~~~~ 473 (478)
T PRK10189 405 RDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRM--VSGRWLWKYPRPEP 473 (478)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH--HcCccccCCCCCCc
Confidence 99999987655432 233333322 33569999999999999999999888775 67789885554443
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=4.7e-47 Score=408.06 Aligned_cols=433 Identities=19% Similarity=0.214 Sum_probs=386.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhh
Q 007614 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (596)
Q Consensus 137 ~~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (596)
+++..|++++.++|.+++++++.+.+++|+.+++|+|++++++++++.++.+.+..+ ..|+..+.+++++|++|+++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~-~~gl~~~~~~i~aq~~Ga~~-- 81 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIF-CVGVIAAVGTLVAIRHGAGD-- 81 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC--
Confidence 455689999999999999999999999999999999999999999999998887754 56899999999999999987
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHH
Q 007614 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (596)
+++.++.+.+++.+.++++++..++++ +.++++++++.++| +.+.+.+|+++..++.|+.
T Consensus 82 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~e--v~~~~~~Yl~i~~~~~~~~ 141 (464)
T PRK00187 82 -----------------IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQ--NVDAAMQFLHLLPFALPGY 141 (464)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998777665 57999999987665 9999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhc----cCChhHHHHHHHHHHHHHHHHHHHHHhhcccc--C
Q 007614 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC----QLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL--M 370 (596)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~----~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~--~ 370 (596)
.+...+++++|+.|+++.+++.+++..++|+++|++|++++ ++|+.|+++||.+++++..+++++++++++.. .
T Consensus 142 ~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
T PRK00187 142 LSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAY 221 (464)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 99999999999999999999999999999999999999863 59999999999999999888777777543321 1
Q ss_pred C-----CCccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007614 371 P-----PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIAS 445 (596)
Q Consensus 371 ~-----~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~ 445 (596)
+ +++++..+|+++|.++|.+++++.+...+.+++.+++++|++++|++++++++..+...+..+++++..++++|
T Consensus 222 ~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq 301 (464)
T PRK00187 222 PLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQ 301 (464)
T ss_pred hhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23344567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC--Ch---HHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 007614 446 YVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK--DP---KVLGIVGTGVLFVSASQPINALAFIFDG 520 (596)
Q Consensus 446 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~--d~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~ 520 (596)
++|++|++++++..+.++.++++++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++.++.+
T Consensus 302 ~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~ 381 (464)
T PRK00187 302 HYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMG 381 (464)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999974 44 6888899999999999999999999999
Q ss_pred HHhhcCchHHHHHHHHHHH-HHHHHHHHHhc--ccCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Q 007614 521 LHYGVSDFRYAACSMMLVG-AMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLE 592 (596)
Q Consensus 521 ~l~a~g~~~~~~~~~~~~~-l~~~~l~~~l~--~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~~~w~~~~~~~~ 592 (596)
+++|.||+|.+++...+.. ++.+++.+.+. +++|+.|+|+++.++.++..+....+++|++.+|.+.+..+|
T Consensus 382 ~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (464)
T PRK00187 382 AIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLRKARASE 456 (464)
T ss_pred hHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 9999999999999777654 55555544443 568999999999999999999888888887766766554443
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7.1e-46 Score=398.17 Aligned_cols=423 Identities=18% Similarity=0.223 Sum_probs=385.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhh
Q 007614 135 SHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKN 213 (596)
Q Consensus 135 ~~~~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~ 213 (596)
..+++..|++++.++|+++++++..+++++|+.++++ +|+++++++++++++.++... +..++..+.+++++|++|++
T Consensus 5 ~~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~-~~~~~~~g~~~lvsq~~Ga~ 83 (453)
T PRK09575 5 MMNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILG-IGLMVGMGTGSLLSIKRGEG 83 (453)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHhcCC
Confidence 4466789999999999999999999999999999999 599999999999999888775 35577788899999999988
Q ss_pred hhhhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhH
Q 007614 214 LTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGS 293 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~ 293 (596)
+ +++.++.+++++.++++++++.++++++++++++.+++.+++ +.+.+..|+++..++.
T Consensus 84 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~--~~~~~~~yl~i~~~~~ 142 (453)
T PRK09575 84 D-------------------LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGR--TLELALQYIQVLIWGC 142 (453)
T ss_pred C-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHHHHHHHHHHHHHHH
Confidence 7 888999999999999999999999999999999999987766 8999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCC-
Q 007614 294 PAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPP- 372 (596)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~~~~- 372 (596)
|+..+...+..++|+.|+++.+++.+++..++|++++++|++.+++|+.|+++||++++++..++.++++++++...++
T Consensus 143 ~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~ 222 (453)
T PRK09575 143 LFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLT 222 (453)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 9999999999999999999999999999999999999999998899999999999999999999988877654433222
Q ss_pred ----CccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007614 373 ----KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGS-DAMAAHQICMQVWLAVSLLTDALAASGQALIASYV 447 (596)
Q Consensus 373 ----~~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~-~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~ 447 (596)
++++..+|++++.|.|..++.....+...+.+.+++++|+ .++|+++++.++..+.+++..|++++..|++++++
T Consensus 223 ~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~ 302 (453)
T PRK09575 223 LKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYF 302 (453)
T ss_pred eccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 2344457899999999999999999999999999999985 68999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcC
Q 007614 448 SKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK-DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (596)
Q Consensus 448 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~-d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g 526 (596)
|+||++++++..+.++++++..+++.+++++++++++.++|+. |+|+.+.+..++++.+++.++++++.+..++++|.|
T Consensus 303 Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g 382 (453)
T PRK09575 303 GARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVN 382 (453)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999995 789999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 527 DFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (596)
Q Consensus 527 ~~~~~~~~~~~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~ 579 (596)
|++.+++.+....++.+++.+.++..+|+.|+|+++.++.++..++.++++++
T Consensus 383 ~~~~~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 383 QGGKALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999987776666677777777666899999999999999988877776643
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=393.90 Aligned_cols=413 Identities=22% Similarity=0.286 Sum_probs=362.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcc-ChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhh
Q 007614 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRL-GSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (596)
Q Consensus 139 ~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~l-G~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (596)
+..|+++++++|++++++++.+++++|+.++||+ |++++|+++++.++.+.+..+ ..|+..+.+++++|++|++|
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~-~~~~~~g~~~lvsq~~Ga~~--- 81 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFML-LLFLRMSTTGLTAQAFGAKN--- 81 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC---
Confidence 3478999999999999999999999999999997 677899999999998887754 45788999999999999987
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHH
Q 007614 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (596)
++++++..++++.++++++++..++...+.++++.+++.++| +.+.+.+|+++..++.|+..
T Consensus 82 ----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~--v~~~a~~Yl~i~~~~~~~~~ 143 (441)
T PRK10367 82 ----------------PQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEA--VLEQARRFLEIRWLSAPASL 143 (441)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999888888889999999988776 89999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhcccc--CCC---
Q 007614 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL--MPP--- 372 (596)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~--~~~--- 372 (596)
+..++++++|+.||++.+++..++.+++|+++|++|++.+++|+.|+++||.+++++.+++.+++++++... .+.
T Consensus 144 ~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~ 223 (441)
T PRK10367 144 ANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEML 223 (441)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh
Confidence 999999999999999999999999999999999999998899999999999999999998888777653211 111
Q ss_pred Cccc-cchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 007614 373 KMGA-LQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGD 451 (596)
Q Consensus 373 ~~~~-~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~ 451 (596)
+.++ ..+|+++|.+.|..+......+.+.+.+.+++++|++++|+|+++.++.++.++++.|++++.+|++++++|++|
T Consensus 224 ~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~ 303 (441)
T PRK10367 224 KTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARD 303 (441)
T ss_pred hhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 1121 357899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHH----HhhHHhhcCc
Q 007614 452 FKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFI----FDGLHYGVSD 527 (596)
Q Consensus 452 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~----~~~~l~a~g~ 527 (596)
++++|+..+.+++++++++.+.+++++++++++..+|++|+|+.+.+..++++.++..+...+..+ +.+.++|. |
T Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-d 382 (441)
T PRK10367 304 GSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-E 382 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-H
Confidence 999999999999999999999999999999999999999999999999999998875332224444 44555554 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007614 528 FRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (596)
Q Consensus 528 ~~~~~~~~~~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~ 578 (596)
+|.+++...+...+ ..+..+.+|+.|+|++..+++++..++..++++
T Consensus 383 t~~~~~~~~~~~~~----~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~ 429 (441)
T PRK10367 383 MRNSMAVAAAGFAL----TLLTLPWLGNHGLWLALTVFLALRGLSLAAIWR 429 (441)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876664322 112224689999999999999999998888754
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.3e-44 Score=389.76 Aligned_cols=429 Identities=21% Similarity=0.240 Sum_probs=384.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhh
Q 007614 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (596)
Q Consensus 138 ~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (596)
++..|++++.++|.+++++...+.+++|+.+++++|++++++++++.++...... +..|+..+..+.++|++|+++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~-~~~g~~~a~~~~vs~~~g~~~--- 83 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVIL-FGHGLLLALTPIVAQLNGAGR--- 83 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCC---
Confidence 4558999999999999999999999999999999999999999999888766653 455788999999999999887
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHH
Q 007614 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (596)
+++.++.+++++.+.++++++.+++++++++++..+++.+++ +.+.+..|+++..++.|+..
T Consensus 84 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~yl~i~~~~~~~~~ 145 (456)
T PRK01766 84 ----------------RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPE--VADIAVGYLHALLWGIPAYL 145 (456)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999987665 88999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh----ccCChhHHHHHHHHHHHHHHHHHHHHHhhcccc----
Q 007614 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF----CQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL---- 369 (596)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~----~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~---- 369 (596)
+...+++++++.|+++++++..+++.++|+++++++++. +.+|+.|++++|.+++++..++.+++++++.+.
T Consensus 146 ~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~ 225 (456)
T PRK01766 146 LYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFR 225 (456)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHH
Confidence 999999999999999999999999999999999999974 368999999999999999999998888654321
Q ss_pred C---CCCccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 370 M---PPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASY 446 (596)
Q Consensus 370 ~---~~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~ 446 (596)
. +.+.++..+|++++.++|..++...+.+.+.+++.+++++|++++|+++++.++.++..+++.+++.+..+.++++
T Consensus 226 ~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 226 LFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred hhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233455689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcC
Q 007614 447 VSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (596)
Q Consensus 447 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g 526 (596)
+|++|++++|+..+.+++++++++++.+++++.+++++.++|++|+++.+.+..++++..+..++++++.+..++++|.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHH-HHHHHHHHHh--cccCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 007614 527 DFRYAACSMMLVG-AMSSTFLLYA--PRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTD 590 (596)
Q Consensus 527 ~~~~~~~~~~~~~-l~~~~l~~~l--~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~~~w~~~~~~ 590 (596)
|++.+++..++.. ++.+++.+++ ...+|+.|+|+++.++.++.+++.++++++ .+|+..+..
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 450 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK--LQRQPSAII 450 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHH
Confidence 9999998777654 4454444433 356999999999999999999988888643 456654433
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.4e-35 Score=323.84 Aligned_cols=415 Identities=14% Similarity=0.089 Sum_probs=350.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhh-hhhhhHHHHHHHHHHHhh-hhhhhhHhHHHHHHHHhhhhhhhhc
Q 007614 144 LIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVEL-ASAGVSISIFNIVSKLFN-IPLLSVATSFVAEDIAKNLTKDLAA 220 (596)
Q Consensus 144 l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~l-aa~~~a~~i~~~~~~~~~-~gl~~~~~~~va~~~~~~~~~~~~~ 220 (596)
++|.+.-.+++++++.+++++|..+++| +|++++ ++++++.++++.+..+.. .|+.++ ++++..+++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a---~i~~~~~~~~~----- 73 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSA---FVPVFTKAKKK----- 73 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhh-----
Confidence 5688889999999999999999999999 999999 899999999988776544 344444 44444333331
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHHH
Q 007614 221 GLEGNGKPPNGTTERKQLSSVSTALLLAV-GIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVS 299 (596)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 299 (596)
+++.++.+.+.+.... +.+++..++.+++++++..+++...+++..+.+..|++++.++.++..+.
T Consensus 74 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~ 140 (502)
T TIGR01695 74 -------------EKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA 140 (502)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344545555555444 44445567788889999988842222236788999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHH--HHHHHHHHHHHHHHHHHHhhccccCCCC--cc
Q 007614 300 LALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAA--ISTVVSQYIVAVTMIWFLNKKVVLMPPK--MG 375 (596)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa--iat~is~~~~~~~~~~~l~~~~~~~~~~--~~ 375 (596)
...++++|+.+|++.+++.+++.++++++..+++ ..++|+.|++ +++++++.++.++.+++++|+..+++++ ++
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
T TIGR01695 141 AVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFR 218 (502)
T ss_pred HHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCC
Confidence 9999999999999999999999998887744333 3579999998 9999999999999888876654333333 34
Q ss_pred ccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhH
Q 007614 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSL-LTDALAASGQALIASYVSKGDFKT 454 (596)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~-~~~~i~~a~~~~vs~~~g~~~~~~ 454 (596)
+..+|++++++.|..+..+...+...+++.+.+.+|++++++|+++.++.+++.. +..+++++..|.++++++++|.++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 5678999999999999999999999999988778899999999999999988765 578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC----ChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHH
Q 007614 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK----DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRY 530 (596)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~----d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~ 530 (596)
+|+..++++++..++++|.++++.++++++..+|.+ |+|.++.+..++++++++.++.+++.++.+.+++.||+|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 999999999999999999999999999999999976 5677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007614 531 AACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (596)
Q Consensus 531 ~~~~~~~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~ 581 (596)
+++......++++++++.+.+.+|+.|+|+++.+++++..++..++++++.
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998888888888888878899999999999999999888887776553
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.4e-33 Score=305.23 Aligned_cols=406 Identities=17% Similarity=0.212 Sum_probs=348.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhhhcccC
Q 007614 145 IVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLE 223 (596)
Q Consensus 145 ~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~ 223 (596)
.+.+.|.+++++++.+.+++|+.+++| +|++++|+++.+.++.+++..+...|+.++....++|+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~--------- 72 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKND--------- 72 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccc---------
Confidence 467899999999999999999999999 8999999999999999998887788999999999999887765
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 007614 224 GNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQ 303 (596)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 303 (596)
+++.++.+.+.+.+.++++++.+++++++++++...++.+++ ...++++..+..++..+....+
T Consensus 73 ----------~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~ 136 (488)
T TIGR02900 73 ----------RKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSSVLK 136 (488)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999887765543 3457888899999999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh-----ccCChhHHHHHHHHHHHHHHHHHHHHHhhccc-cCCC-----
Q 007614 304 GIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-----CQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV-LMPP----- 372 (596)
Q Consensus 304 ~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~-----~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~-~~~~----- 372 (596)
+++|+.+|++..++.++++.+++++++..+++. ..+|+.|+++++.+++++..++.+++++|+.+ +.++
T Consensus 137 ~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (488)
T TIGR02900 137 GYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDY 216 (488)
T ss_pred HHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999999999998877666542 24678899999999999999988777654432 1111
Q ss_pred -CccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhh----C---hhHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007614 373 -KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ----G---SDAMAAH----QICMQVWLAVSLLTDALAASGQ 440 (596)
Q Consensus 373 -~~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~----g---~~~~aa~----~i~~~i~~l~~~~~~~i~~a~~ 440 (596)
+.++..+|++++++.|.+++++...+...+++.++++. | ..+.+.+ +++.++.+++..+..+++++..
T Consensus 217 ~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~ 296 (488)
T TIGR02900 217 KSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALV 296 (488)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHH
Confidence 12234679999999999999999999999999888764 2 1222232 3556777788777899999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 007614 441 ALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDG 520 (596)
Q Consensus 441 ~~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~ 520 (596)
|.+++.++++|.++.++..++++++...+++|.++++.++++++..+|.++++ +..+++++++..++.+++.+..+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876543 46789999999999999999999
Q ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHhc--ccCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 521 LHYGVSDFRYAACSMMLVGAMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (596)
Q Consensus 521 ~l~a~g~~~~~~~~~~~~~l~~~~l~~~l~--~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~ 579 (596)
++++.||+|..++.+.+..+++.++++.+. +.+|+.|+|+++.+++++..++..+..++
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888888887766 88999999999999999998888888754
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=7.6e-35 Score=308.34 Aligned_cols=429 Identities=21% Similarity=0.231 Sum_probs=385.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhh
Q 007614 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (596)
Q Consensus 138 ~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (596)
..+.|++++++.|+++..+.+++.+++++.++||+|+.++++.+++++..+....-+..|+.++..++++|++|.++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~--- 100 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK--- 100 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc---
Confidence 35579999999999999999999999999999999999999999999999997777778999999999999999988
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHH
Q 007614 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (596)
++....+.+++..+.+..+++... ++.+.++++..++++++ +...+..|.++++|+++.+.
T Consensus 101 ----------------~~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~--i~~~a~~y~~~~ip~~~a~~ 161 (473)
T KOG1347|consen 101 ----------------FTALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPD--ISRDAGSYAFMLIPGLFSYA 161 (473)
T ss_pred ----------------cchhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChh--HHHHHhhhHhhhcchhhhhH
Confidence 788888888888888888888776 66678999999999887 99999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCC--Cc
Q 007614 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKV-VLMPP--KM 374 (596)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~-~~~~~--~~ 374 (596)
....++.++|+++++.+..+......++|+.+++++++.+++|+.|++++..+++|+...++.+|..... ...+. ..
T Consensus 162 ~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~ 241 (473)
T KOG1347|consen 162 VSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSG 241 (473)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986543 22221 12
Q ss_pred cccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 007614 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQG--SDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (596)
Q Consensus 375 ~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g--~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~ 452 (596)
...+++++++++.|..++...+++.+.+..++.+.++ ..++++.+++.++....++++.+++.+..+++++.+|+|++
T Consensus 242 ~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 242 EFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCCh
Confidence 2557889999999999999999999999999999997 58899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHH
Q 007614 453 KTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAA 532 (596)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 532 (596)
+.+|......+..+...+...+..+...++.+..+|++|+|+.+...+..+++++..++++.+.++.++.+|.|+++..+
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHH----HHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Q 007614 533 CSM----MLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDL 591 (596)
Q Consensus 533 ~~~----~~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~~~w~~~~~~~ 591 (596)
+.+ ++.+++...++ -+..++|..|+|+|+..+..+........ ..+.+|.++.++.
T Consensus 402 ~vnl~~yyl~G~p~g~~l-~~~~~~g~~glw~G~~~~~~~~~~~l~~~--~~~tdW~~~~~~a 461 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYL-GFFTKFGVKGLWIGILLGFSVQTLVLAIV--TARTDWKNQAEKA 461 (473)
T ss_pred EEeeeeeeEecCcceeEE-EEEEecCceEEEeehHHHHHHHHHHHHHh--eeeccHHHHHHHH
Confidence 644 44455544333 34578999999999999976666666555 4667899886653
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=9.2e-33 Score=286.51 Aligned_cols=334 Identities=31% Similarity=0.444 Sum_probs=305.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhhhcccCCCCCCC
Q 007614 150 PAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP 229 (596)
Q Consensus 150 p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~ 229 (596)
|.++.+++..+.+.+|+.+++++|++++++++++.++.+.... +..|+.++..+.+++++|+++
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~-~~~~i~~~~~~~~s~~~g~~~--------------- 64 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFS-ILMGLGTATTALVAQAVGAGN--------------- 64 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHH-HHHHHHHhHHHHHHHHHCCCC---------------
Confidence 7789999999999999999999999999999999888776664 566899999999999998876
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 007614 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGF 309 (596)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 309 (596)
+++.++.+++.+.+..+++++.+++++++++++..+++.+++ ..+.+..|++++.++.++..+....++++|+.
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 138 (342)
T TIGR00797 65 ----YQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGE--VAELAQDYLRILILGIPAYLLNFVLRGFLRGQ 138 (342)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788899999999999999999999999999999999875554 78889999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH-hcc-CChhHHHHHHHHHHHHHHHHHHHHHhhccc-cC----CCCccccchhhH
Q 007614 310 KDTKTPVLCLGIGNLLAVFLFPILIY-FCQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVV-LM----PPKMGALQFGDY 382 (596)
Q Consensus 310 ~~~~~~~~~~~~~~v~~i~l~~lli~-~~~-~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~-~~----~~~~~~~~~~~~ 382 (596)
+|++.+++.+++++++++++++++++ .++ +|+.|+++++.+++++..++.+++++|+.. .. +.++++..+|++
T Consensus 139 ~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 218 (342)
T TIGR00797 139 GDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRL 218 (342)
T ss_pred CCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHH
Confidence 99999999999999999999999987 567 889999999999999999998888775322 11 234455678999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 007614 383 VKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFV 462 (596)
Q Consensus 383 lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~ 462 (596)
+++++|.++..+..++...+++.+++.+|++++++|+++.++.++...++.+++++..|.++++++++|.+++++..+++
T Consensus 219 ~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
T TIGR00797 219 LKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVA 298 (342)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHH
Q 007614 463 LKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFV 505 (596)
Q Consensus 463 l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~ 505 (596)
+++.++++++.+++++++++++.++|++|+++.+.+..++++.
T Consensus 299 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 299 LKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.9e-32 Score=287.94 Aligned_cols=401 Identities=15% Similarity=0.110 Sum_probs=343.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhhhccc
Q 007614 144 LIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGL 222 (596)
Q Consensus 144 l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~ 222 (596)
++|.+.....+.++..+.+++-..++.| +|++++|.++..+++...+..+...|+.++.+..++|+ +++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~-------- 72 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ-------- 72 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC--------
Confidence 5677788888999999999999999999 99999999999999999888877888888888888766 222
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHH
Q 007614 223 EGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLAL 302 (596)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 302 (596)
+++.++++++++.+.++.+++.+++++++.+++...++.+++ ...+..+..+..++..+....
T Consensus 73 -----------~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 135 (416)
T PRK15099 73 -----------PQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWANLL 135 (416)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999987765543 345666666667777888999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccc-c---CCCCccccc
Q 007614 303 QGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV-L---MPPKMGALQ 378 (596)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~-~---~~~~~~~~~ 378 (596)
++++|+.+|++.++...+++.++|+++ +++++. ..|+.|+++|+++++.+..+..+++++|++. . .++++++..
T Consensus 136 ~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (416)
T PRK15099 136 LAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGL 213 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHH
Confidence 999999999999999999999999887 444443 2499999999999999998887777755432 1 133455667
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChhHHH
Q 007614 379 FGDYVKSGGFLLGRTLAVLITMTLGTSMAA-RQGSDAMAAHQICMQVWLA-VSLLTDALAASGQALIASYVSKGDFKTVR 456 (596)
Q Consensus 379 ~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~-~~g~~~~aa~~i~~~i~~l-~~~~~~~i~~a~~~~vs~~~g~~~~~~~~ 456 (596)
+|+++++|.|..++++..++...+++.+++ .+|++++++|+++.++.+. ...+..+++++.+|.+++. +|.++.+
T Consensus 214 ~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~ 290 (416)
T PRK15099 214 AGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDIT 290 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHH
Confidence 899999999999999999999999999996 7899999999999999774 5788899999999999985 6788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHHH
Q 007614 457 EITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMM 536 (596)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~ 536 (596)
+..++..++...++++.+++++++++++..+|.+|+ ++.+.+++++++++.++...+..+...+.+.++++......+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 368 (416)
T PRK15099 291 REIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEV 368 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999866 555778899999998888888887777778888888888888
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007614 537 LVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (596)
Q Consensus 537 ~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~ 578 (596)
...++..++++++.+.+|..|++++..+++++..++..+...
T Consensus 369 ~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 369 SQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999999999999887766653
No 12
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=4.8e-31 Score=277.00 Aligned_cols=422 Identities=12% Similarity=0.053 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhh-hhhhhhHHHHHHHHHHHhhhhh-hhhHhHHHHHHHHhhhhhh
Q 007614 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVE-LASAGVSISIFNIVSKLFNIPL-LSVATSFVAEDIAKNLTKD 217 (596)
Q Consensus 141 ~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~-laa~~~a~~i~~~~~~~~~~gl-~~~~~~~va~~~~~~~~~~ 217 (596)
.+.++|.++-.....+++++.++++..+++. +|... .+|+.+++.++|.+-.++..|. .++..|+..++..++.
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~--- 82 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEG--- 82 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcch---
Confidence 5678899999999999999999999999999 99964 7899999999999999988763 2333444433322221
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCC-CccchhhHHHHHHHHHhhHHHH
Q 007614 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPS-ASAMHGPAKKFLMLRALGSPAF 296 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~-~~~~~~~a~~~l~~~~~~~~~~ 296 (596)
+++.++.......+...+.+..+++..+++|++.+.+..+. |.+....+....+++.|.+++.
T Consensus 83 ----------------~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~i 146 (518)
T COG0728 83 ----------------EEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFI 146 (518)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 34555555666657777778888889999999995543332 2112236888899999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc
Q 007614 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGA 376 (596)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~~~~~~~~ 376 (596)
.+.....++||+.+++..+.+.++..|+.-+.....+......-..+.++|++++-+.+.++.++.++|.+...++++.+
T Consensus 147 sL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~ 226 (518)
T COG0728 147 SLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF 226 (518)
T ss_pred HHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC
Confidence 99999999999999999999999999998875555554433224678899999999999999999999988666666544
Q ss_pred --cchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChh
Q 007614 377 --LQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVS-LLTDALAASGQALIASYVSKGDFK 453 (596)
Q Consensus 377 --~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~-~~~~~i~~a~~~~vs~~~g~~~~~ 453 (596)
.++|++++...|..+...+.++...+++.+++.+.+.+++.++.++++.+++. ++..++++...|.++++..++|.+
T Consensus 227 ~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~ 306 (518)
T COG0728 227 KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWP 306 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 58999999999999999999999999999999999999999999999999977 667999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC----CChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchH
Q 007614 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFT----KDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFR 529 (596)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~----~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~ 529 (596)
+.++..++++++++++.+|.++++.++++++.+++. .+++....+.+.+..++++.++..+..++...+++.+|+|
T Consensus 307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k 386 (518)
T COG0728 307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK 386 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999973 2567788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007614 530 YAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (596)
Q Consensus 530 ~~~~~~~~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~ 581 (596)
.|++...+..+++..+++.+.+.+|..|++.+..++..+.+.+.++.++++.
T Consensus 387 tP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 387 TPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred cChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988889999999999999999888888888886654
No 13
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=2.1e-30 Score=276.89 Aligned_cols=389 Identities=14% Similarity=0.139 Sum_probs=344.5
Q ss_pred cChh-hhhhhhhHHHHHHHHHHHhhh-hhhhhHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 007614 172 LGSV-ELASAGVSISIFNIVSKLFNI-PLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAV 249 (596)
Q Consensus 172 lG~~-~laa~~~a~~i~~~~~~~~~~-gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 249 (596)
+|.. +.+++.++..+++.+..++.. ++.++..|...+.. +++ +++.++..++.+.+..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~-------------------~~~~~~f~~~~~~~~~ 64 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKG-------------------EEEARRFISTLLTILL 64 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-------------------HHHHHHHHHHHHHHHH
Confidence 6765 478999999999999877653 34555555555543 222 6778889999999999
Q ss_pred HHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 007614 250 GIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFL 329 (596)
Q Consensus 250 ~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l 329 (596)
++.++++++.+++++++.+.+....+++..+.+..++++++|..++..+..++.+++|+++|+..+...+++.|+..++.
T Consensus 65 ~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~ 144 (451)
T PF03023_consen 65 IISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILS 144 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999866666668899999999999999999999999999999999999999999999876664
Q ss_pred HHHHHHhccCC---hhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcc--ccchhhHHHhhHHHHHHHHHHHHHHHHHH
Q 007614 330 FPILIYFCQLG---MPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMG--ALQFGDYVKSGGFLLGRTLAVLITMTLGT 404 (596)
Q Consensus 330 ~~lli~~~~~G---v~Gaaiat~is~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~lk~~~p~~~~~~~~~i~~~~~~ 404 (596)
..++. ..+| +.+.++|.+++..++.+++++..+|.+.+.+++++ ++.+|++++...|.++.....++...+++
T Consensus 145 ~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~ 222 (451)
T PF03023_consen 145 LLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDR 222 (451)
T ss_pred HHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 4567 89999999999999999999999988776665544 45689999999999999999999999999
Q ss_pred HHHHhhChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007614 405 SMAARQGSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGS 483 (596)
Q Consensus 405 ~l~~~~g~~~~aa~~i~~~i~~l~~~~-~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 483 (596)
.+++.+++..+++++.+.++.+++..+ ..+++++..|.++++..++|.++.++..++.++..+.+.+|.++++..++++
T Consensus 223 ~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~ 302 (451)
T PF03023_consen 223 ALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEP 302 (451)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999987754 6799999999999999999999999999999999999999999999999999
Q ss_pred hhcccC----CChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHHHHHHHHHHHHHHHhcccCChhHHH
Q 007614 484 LAPLFT----KDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVW 559 (596)
Q Consensus 484 i~~lf~----~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~l~~~~l~~~l~~~~Gi~Gi~ 559 (596)
+++++. .|.|..+....++.+++++.++.+++.++...+++.+|+|.++...++..++++.+...+.+.+|..|++
T Consensus 303 iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~Gla 382 (451)
T PF03023_consen 303 IVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVAGLA 382 (451)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999974 3677789999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 007614 560 AGLTLFMGLRTVAGFVRLLSKSG 582 (596)
Q Consensus 560 ~a~~i~~~v~~~~~~~~l~~~~~ 582 (596)
+++.++..+.+++.++.++++.+
T Consensus 383 la~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 383 LATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998876654
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=2.1e-25 Score=242.90 Aligned_cols=397 Identities=12% Similarity=0.087 Sum_probs=327.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhh
Q 007614 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (596)
Q Consensus 140 ~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (596)
..++..+.+....++++...+.+++...+++| +|++++|.++.+..+.+++..+...|+..+. .+ ++++
T Consensus 3 ~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~----~~~~-- 72 (492)
T PRK10459 3 LREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQ----RQDI-- 72 (492)
T ss_pred hHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hh----cccC--
Confidence 35678888888999999999999999999999 9999999999999999999888887765533 11 1110
Q ss_pred hcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHH
Q 007614 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVV 298 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 298 (596)
. ++..++.+++.++.+++..++++.+++++..+++.+ + ...++.+..+..++..+
T Consensus 73 ---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~------~~~~~~~~~~~~~~~~~ 127 (492)
T PRK10459 73 ---------------S---HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNP-E------LAPLIKTLSLAFVIIPI 127 (492)
T ss_pred ---------------C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-h------hHHHHHHHHHHHHHHHH
Confidence 1 123456677777788887787888888887776533 2 34567777788888888
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccc
Q 007614 299 SLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQ 378 (596)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~~~~~~~~~~ 378 (596)
....++.++..++++......++.+++..++...+.+ .++|+.+.+++++++..+..++.++..+++ ++.++++++..
T Consensus 128 ~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 205 (492)
T PRK10459 128 GQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-YRPALHFSLAS 205 (492)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-CCccceecHHH
Confidence 8899999999999999999999888888777666554 478999999999999988877654443332 22223345567
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhHHH
Q 007614 379 FGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVR 456 (596)
Q Consensus 379 ~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~~aa~~i~~~i~~l~~~~-~~~i~~a~~~~vs~~~g~~~~~~~~ 456 (596)
+|++++++.|.+...+...+...+|+.+++.+ |+++++.|+.+.++.+++... ...+++...|.+++. ++|.++.+
T Consensus 206 ~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~ 283 (492)
T PRK10459 206 VKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLR 283 (492)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHH
Confidence 89999999999999999999999999998875 999999999999998876544 455788899999885 57889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHHH
Q 007614 457 EITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMM 536 (596)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~ 536 (596)
+..++.+++...+++|+++++.++++++..++.+++ +..+...++++++..++..+..+...++++.||+|..+....
T Consensus 284 ~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~ 361 (492)
T PRK10459 284 VGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNV 361 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHH
Confidence 999999999999999999999999999999988765 677889999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHH
Q 007614 537 LVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (596)
Q Consensus 537 ~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l 577 (596)
+..++.++..+.+...+|+.|+++++.+++.+..+...+.+
T Consensus 362 ~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 362 FKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777776777789999999999999999888777766
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.93 E-value=2.4e-22 Score=218.36 Aligned_cols=387 Identities=17% Similarity=0.143 Sum_probs=309.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhh
Q 007614 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (596)
Q Consensus 140 ~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (596)
..+++.|.+.-...+++++.+.+++....++| +|+++.|.++.+.++..++..+...|+..+....++++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~---- 79 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGE---- 79 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccH----
Confidence 36778899999999999999999999999999 9999999999999999999998888888887777776643332
Q ss_pred hcccCCCCCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHH
Q 007614 219 AAGLEGNGKPPNGTTERKQLSS-VSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (596)
+...... ....+.+.++.+.+.........+. + +.....+.+..+..+...
T Consensus 80 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~ 131 (480)
T COG2244 80 ---------------YLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------D------PVLALLLRILSLALLLLP 131 (480)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------C------hhhHHHHHHHHHHHHHHH
Confidence 2222322 3333333333333333322222111 1 224556778899999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHh-hccccCCCCcc-
Q 007614 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLN-KKVVLMPPKMG- 375 (596)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~-~~~~~~~~~~~- 375 (596)
.....++++|+.++++...+..+.. ..-+...+.+. ........++..++......+...+.. ++....++.++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (480)
T COG2244 132 LSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF 207 (480)
T ss_pred HHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc
Confidence 9999999999999999999994444 11112222222 134455667777777776666666554 23322333333
Q ss_pred -ccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 007614 376 -ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (596)
Q Consensus 376 -~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~ 453 (596)
...++++++.+.|.........+...+|+.+++.+ |+++++.|+.+.++......+..+++.+..|.+++...++|.+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 56889999999999999999999999999999886 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHH
Q 007614 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (596)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 533 (596)
+.++..++++++..+++.|..+++.++++++..++.+++ +..+...+.++++..++.++.......+++.|+++..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 365 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLL 365 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 999999999999999999999999999999999998766 344788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCChhHHHHHHHH
Q 007614 534 SMMLVGAMSSTFLLYAPRATGLPGVWAGLTL 564 (596)
Q Consensus 534 ~~~~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i 564 (596)
...+..+.+..+++.+++.+|+.|..++...
T Consensus 366 ~~~~~~i~~~~l~~~li~~~g~~g~~~a~~~ 396 (480)
T COG2244 366 ISLISALLNLILNLLLIPRFGLIGAAIATAS 396 (480)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhhhHHHHHHH
Confidence 9999999999999999999999999999933
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.84 E-value=7.4e-19 Score=189.60 Aligned_cols=201 Identities=19% Similarity=0.150 Sum_probs=186.3
Q ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHH
Q 007614 378 QFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVRE 457 (596)
Q Consensus 378 ~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~ 457 (596)
.+|+++++++|.+++++...+...+++.+++++|++++|++++++++..+...+..+++++..+++++++|++|++++++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~ 106 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARA 106 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC--CChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHH
Q 007614 458 ITNFVLKIGVLTGVSLATILGLSFGSLAPLFT--KDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSM 535 (596)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~--~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 535 (596)
..+.++.++++++++.+++.+++++++..+|. .|+|+.+.+.+++++..++.++..+..++.+++++.||++.+++.+
T Consensus 107 ~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~ 186 (478)
T PRK10189 107 AARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLIN 186 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHH
Confidence 99999999999999999999999999999995 6899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhc------ccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007614 536 MLVGAMSSTFLLYAP------RATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (596)
Q Consensus 536 ~~~~l~~~~l~~~l~------~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~ 578 (596)
.+..++++++.+.++ +.+|+.|+|+|+.+++.+..++..+.+.
T Consensus 187 ~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 187 GGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777766655544 3689999999999999998877666553
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.83 E-value=9.4e-19 Score=187.15 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=197.0
Q ss_pred cccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH
Q 007614 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (596)
Q Consensus 375 ~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~ 454 (596)
.....|+++++++|.++.++.......+|+.++++++++++|+-++++++..++..+..+++.+..+.++|++|++|+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHH
Q 007614 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (596)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 534 (596)
+++...+++.+.++++++..++...+++++..++..++|+.+.+.+|+.+..++.++..+..++.+++++.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc----CChhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007614 535 MMLVGAMSSTFLLYAPRA----TGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (596)
Q Consensus 535 ~~~~~l~~~~l~~~l~~~----~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~ 581 (596)
+.+..+.++.+++.++.. +|+.|+++|+.+++.+.+++.++++++++
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999888877655 89999999999999999998888886554
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.83 E-value=1.8e-18 Score=186.41 Aligned_cols=205 Identities=16% Similarity=0.122 Sum_probs=186.8
Q ss_pred ccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 007614 374 MGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (596)
Q Consensus 374 ~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~ 453 (596)
+++..+|++++.++|.++.++...+...+++.+++++|++++|+++++.++.++...+..+++++..+.++|++|++|++
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHH
Q 007614 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (596)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 533 (596)
++++..+.++.+.++++++..+++. +.+++..+|..|+|+.+.+..++++..++.++..+...+.+.+++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877765 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc------cCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 534 SMMLVGAMSSTFLLYAPR------ATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (596)
Q Consensus 534 ~~~~~~l~~~~l~~~l~~------~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~ 579 (596)
..++..++++++.+.++. .+|+.|+|+|+.++..+..+..++++++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888888666543 4899999999999987777655555543
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.83 E-value=2.2e-18 Score=184.21 Aligned_cols=205 Identities=10% Similarity=-0.002 Sum_probs=189.2
Q ss_pred cccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 007614 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (596)
Q Consensus 375 ~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~ 453 (596)
-+.+.|+++|+++|.++.++...+...+|+.+++++ |+.++|+.+++.++.++...+..+++.+..+.+++++|++|++
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 345688999999999999999999999999999998 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHH
Q 007614 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (596)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 533 (596)
++++..++++.++++++++..+....+.+++..++..|+|+.+.+.+|+.+..++.++..+..++.+++++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc--cCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 534 SMMLVGAMSSTFLLYAPR--ATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (596)
Q Consensus 534 ~~~~~~l~~~~l~~~l~~--~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~ 579 (596)
..++..++++++.+.++. .+|+.|+|+|+.+++++..++..+++.+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888877766554 6899999999999999988776666543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.81 E-value=6.5e-18 Score=181.68 Aligned_cols=205 Identities=13% Similarity=0.045 Sum_probs=190.0
Q ss_pred ccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH
Q 007614 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (596)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~ 454 (596)
+...|++++.++|.+++++...+...+++.+++++ |++++++++++.++..+...+..+++.+..+++++++|++|+++
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 34578999999999999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHH
Q 007614 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (596)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 534 (596)
+++..++++.++++++++.++++..+++++..+|..|+++.+.+..++++..++.++..+.....+++++.||++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcc--cCChhHHHHHHHHHHHHHHHHHHHHHHhc
Q 007614 535 MMLVGAMSSTFLLYAPR--ATGLPGVWAGLTLFMGLRTVAGFVRLLSK 580 (596)
Q Consensus 535 ~~~~~l~~~~l~~~l~~--~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~ 580 (596)
+....++++++.+.++. ++|+.|+|+++.+++.+..++.+++++++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88888888777666654 68999999999999999988877766443
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.81 E-value=9.8e-18 Score=180.86 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=189.8
Q ss_pred cccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH
Q 007614 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (596)
Q Consensus 375 ~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~ 454 (596)
.++.+|+++++++|.+++.+...+...+++.+++++|++++++++++.++..+...+..+++.+..|.+++++|++|+++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 34468899999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHH
Q 007614 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (596)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 534 (596)
+++..+.++.++++++++.+++++++++++..++..|+++.+.+..++.+..++.++..+..++.+.+++.||++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc------ccCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 535 MMLVGAMSSTFLLYAP------RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (596)
Q Consensus 535 ~~~~~l~~~~l~~~l~------~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~ 579 (596)
+.+..++++++++.++ +.+|+.|+++++.+++++..++.++++++
T Consensus 167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887766654 35899999999999999998887777643
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.73 E-value=3.9e-15 Score=162.78 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=188.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhh
Q 007614 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (596)
Q Consensus 137 ~~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (596)
+++..|++++.+.|..++++...+...+|+.+.+.+|++++++++.+..+.++...++..++.++..+.++++.++++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~-- 295 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN-- 295 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 445689999999999999999999999999885559999999999999998887766666788899999999988876
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCC--CccchhhHHHHHHHHHhhHH
Q 007614 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPS--ASAMHGPAKKFLMLRALGSP 294 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~--~~~~~~~a~~~l~~~~~~~~ 294 (596)
+++.++.+.+.+.+..+++++.+++++++++++..++..++ +++....+..++++.+++.+
T Consensus 296 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~ 358 (502)
T TIGR01695 296 -----------------WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLI 358 (502)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999886543 34467889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007614 295 AFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKV 367 (596)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~ 367 (596)
+..+.......+++.||++.+++..++..++|++++++++. .+|+.|+++|+.+++.+..++..++++|+.
T Consensus 359 ~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 359 FYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred HHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999874 489999999999999999999988887764
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.71 E-value=2.5e-14 Score=142.87 Aligned_cols=269 Identities=17% Similarity=0.233 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhhhcccC
Q 007614 145 IVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLE 223 (596)
Q Consensus 145 ~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~ 223 (596)
+|.+.-..+++++..+.+++-..++.| +|++++|.++...++.+++..+...|+..+....+++...+
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~----------- 70 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK----------- 70 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----------
Confidence 566777889999999999999999999 99999999999999999998887888777776666554221
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 007614 224 GNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQ 303 (596)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 303 (596)
+++.+.+....+...++.+++... ...+...++.++. ...+........++........
T Consensus 71 ----------~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 129 (273)
T PF01943_consen 71 ----------KELRSAYFSSVLFLLLIFSLIFLL-----ILLIASFFGNPSL------SLILIILALLILILSSLSSVFS 129 (273)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcCCchH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 133344444444443333333222 2222224443322 2223322222235788889999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccchhhHH
Q 007614 304 GIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYV 383 (596)
Q Consensus 304 ~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 383 (596)
.++++.++.+...+.++...++.+++..+++.. ..++.+..++..++..+..++..++.+|+.+..+...++...|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (273)
T PF01943_consen 130 GLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFKEIL 208 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHHHHH
Confidence 999999999999999999999888776666654 4458999999999999999999998887654333344467889999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 384 KSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASY 446 (596)
Q Consensus 384 k~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~ 446 (596)
+.+.|.+...+...+....+..+++.+ |++++|.|+++.++......+..++.++..|.+++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 209 RFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987 999999999999999999999999999999999875
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.69 E-value=6.7e-15 Score=152.58 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 007614 388 FLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGV 467 (596)
Q Consensus 388 p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~ 467 (596)
|.++..+...+...+++.+++++|++++++++++.++..+...+..+++++..|.++++.|++|++++++..+..+.+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHHHHHHHHHHHHHH
Q 007614 468 LTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLL 547 (596)
Q Consensus 468 ~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~l~~~~l~~ 547 (596)
+++++.+++++++++++..+|..|++..+.+..+++++++..++.++..+..+++++.||.+.+++...+..+++.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987888888999999999999999999999999999999999999988877776666554
Q ss_pred Hhcc---c-CChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 548 YAPR---A-TGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (596)
Q Consensus 548 ~l~~---~-~Gi~Gi~~a~~i~~~v~~~~~~~~l~~ 579 (596)
.+.. + +|+.|++++..++.++..++.++.+++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 3 569999999999999988877766643
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.68 E-value=3.5e-14 Score=152.14 Aligned_cols=211 Identities=20% Similarity=0.268 Sum_probs=191.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhh
Q 007614 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (596)
Q Consensus 137 ~~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (596)
.++..|++++...|.+++.....+..++|+.+.+.+++..+++++.+..+.++...++..++.++.-|.+++...++|
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d-- 270 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGD-- 270 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 345589999999999999999999999999999999999999999999999999988888888888888888776665
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcC--CCCCccchhhHHHHHHHHHhhHH
Q 007614 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMG--VPSASAMHGPAKKFLMLRALGSP 294 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~--~~~~~~~~~~a~~~l~~~~~~~~ 294 (596)
.++.++.+++.+...+++.++.++.++.+++++.+.+. +.-+.+-.+....++++.++++|
T Consensus 271 -----------------~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~ 333 (451)
T PF03023_consen 271 -----------------WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLP 333 (451)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhH
Confidence 78899999999999999999999999999999999764 33344456778999999999999
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007614 295 AFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV 368 (596)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~ 368 (596)
++.+...+...+.+++|+|.|++..+++.++|++++.+++. .+|..|.++++.++.++.+++++++++|+..
T Consensus 334 ~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 334 FYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999988874 5899999999999999999999999988765
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.64 E-value=8.9e-13 Score=139.52 Aligned_cols=234 Identities=21% Similarity=0.227 Sum_probs=197.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhh
Q 007614 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (596)
Q Consensus 138 ~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (596)
++..|++.+...|++++..++.+..++|+.+-+.+.+...+.+..+..++.+...+++.++.++.-+-+++...+++
T Consensus 228 ~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~--- 304 (518)
T COG0728 228 DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD--- 304 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC---
Confidence 36789999999999999999999999999999999999999999999999999999888887887777777755554
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCC--CccchhhHHHHHHHHHhhHHH
Q 007614 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPS--ASAMHGPAKKFLMLRALGSPA 295 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~--~~~~~~~a~~~l~~~~~~~~~ 295 (596)
.++..+..+.++.+++++.++.++.+.++++|+.+.+.... +++-...+...+.+...++++
T Consensus 305 ----------------~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 305 ----------------WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 67889999999999999999999999999999998763332 222355677889999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 007614 296 FVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMG 375 (596)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~~~~~~~ 375 (596)
+.+..++...+.+++|+|+|+++.+++.++|+++++.++ +.+|..|.++++.++.++++.++++.++|+....+ ...
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~~ 445 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GRG 445 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cch
Confidence 999999999999999999999999999999999997766 45788889999999999999999999988765443 445
Q ss_pred ccchhhHHHhhHHHHHHHH
Q 007614 376 ALQFGDYVKSGGFLLGRTL 394 (596)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~ 394 (596)
+..+. ..|..+-..++..
T Consensus 446 ~~~~~-~~k~~l~~~i~~~ 463 (518)
T COG0728 446 WGLFL-ILKLLLASAIMAA 463 (518)
T ss_pred hhHHH-HHHHHHHHHHHHH
Confidence 54444 4555444444333
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.62 E-value=6.8e-16 Score=141.84 Aligned_cols=160 Identities=23% Similarity=0.332 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 007614 388 FLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGV 467 (596)
Q Consensus 388 p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~ 467 (596)
|..++++...+.+.+++.+++++|++++++++++.++.++...+..+++++..+.+++++|++|++++++..+.++.+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHHHHHH-HHHHHHH
Q 007614 468 LTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVG-AMSSTFL 546 (596)
Q Consensus 468 ~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-l~~~~l~ 546 (596)
+++++.++.+.++++++..+|+.|+|+.+.+.+++++..+..++.++.....+++++.||++.+++...+.. ++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888877 6776655
Q ss_pred H
Q 007614 547 L 547 (596)
Q Consensus 547 ~ 547 (596)
+
T Consensus 161 y 161 (162)
T PF01554_consen 161 Y 161 (162)
T ss_dssp H
T ss_pred h
Confidence 3
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.62 E-value=2.2e-13 Score=148.44 Aligned_cols=204 Identities=18% Similarity=0.260 Sum_probs=171.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhh------hhhh----hhHHHHHHHHHHHhhhhhhhhHhHHH
Q 007614 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVE------LASA----GVSISIFNIVSKLFNIPLLSVATSFV 206 (596)
Q Consensus 138 ~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~------laa~----~~a~~i~~~~~~~~~~gl~~~~~~~v 206 (596)
++..|++++.++|.+++++...+...+|+.++++ +++.. .+.+ +++.++..+.. ....++..+..+.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999998 54321 2222 23344555553 34456778889999
Q ss_pred HHHHHhhhhhhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHH
Q 007614 207 AEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFL 286 (596)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l 286 (596)
+++.++++ +++.++.+.+.+.+..+++++.++++..+++++..++..+++ +..++
T Consensus 300 s~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~~~l 354 (488)
T TIGR02900 300 SEAMAKKN-------------------YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD------AGNFI 354 (488)
T ss_pred HHHHHcCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hHHHH
Confidence 99888776 788889999999999999999999999999999998874333 67899
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007614 287 MLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (596)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~ 366 (596)
+++++..++..+.....+++++.||++.+++..++..++|++++++++..+.+|+.|+++++.+++++..++.+++.+|.
T Consensus 355 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 355 RVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998865679999999999999999999999888765
Q ss_pred c
Q 007614 367 V 367 (596)
Q Consensus 367 ~ 367 (596)
.
T Consensus 435 ~ 435 (488)
T TIGR02900 435 I 435 (488)
T ss_pred h
Confidence 3
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.60 E-value=1.2e-15 Score=140.20 Aligned_cols=161 Identities=26% Similarity=0.391 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhhhcccCCCCCCC
Q 007614 150 PAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP 229 (596)
Q Consensus 150 p~~~~~l~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~ 229 (596)
|.++.+++..+...+|+.+++++|++++++++++..+.++... +..|+..+..++++|++|++|
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~-~~~g~~~a~~~~~s~~~G~~~--------------- 64 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFM-LIFGLATALQILISQNIGAGD--------------- 64 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCSSS---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh-hcccccccccceeeccccccc---------------
Confidence 8899999999999999999999999999999999999999886 566899999999999999887
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 007614 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGF 309 (596)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 309 (596)
+++.++.++..+.+.++++++.+++++++.+++..+++.+++ +.+.+..|+++..+..|+..+....++++++.
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (162)
T PF01554_consen 65 ----YKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPE--VIEIARQYLRIMAFSIPFFALFFVFSGILQGI 138 (162)
T ss_dssp ----TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTC--CHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCC
T ss_pred ----ccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHH--HHHHhhccchhhhhHHHHHHHHHHHHHHHHHC
Confidence 788999999999999999999999999999999999988877 89999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHH-HHHHHHHHH
Q 007614 310 KDTKTPVLCLGIGN-LLAVFLFPI 332 (596)
Q Consensus 310 ~~~~~~~~~~~~~~-v~~i~l~~l 332 (596)
|+++.+++..++.. +++++++|+
T Consensus 139 g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 139 GRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp STHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999 999998875
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.56 E-value=8e-12 Score=136.29 Aligned_cols=202 Identities=16% Similarity=0.095 Sum_probs=167.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhh
Q 007614 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (596)
Q Consensus 138 ~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (596)
.+..|++++++.|.+.+++...+...+|+.++|+ +|++++|.|+.+..+.++...++...+..+..|..++. + +
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~----~-~ 277 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI----Q-D 277 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh----c-C
Confidence 4567999999999999999999999999999999 89999999999999887765444433333444444432 1 1
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHH
Q 007614 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (596)
| +++.++.+.+.+.+...++++.++.+.+.++++..++.+++ +..+...++++++...+.
T Consensus 278 ~----------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~ 337 (492)
T PRK10459 278 D----------------TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLR 337 (492)
T ss_pred C----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHH
Confidence 1 57778889999999999999999999999999998776442 567889999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007614 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (596)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~ 366 (596)
.+.......+++.||++.+++.+++.++++++..+++. ..+|+.|+++++++++.+..++.+++++|+
T Consensus 338 ~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 338 SVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887666655 357999999999999999999888888554
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.52 E-value=3.1e-11 Score=119.06 Aligned_cols=247 Identities=16% Similarity=0.179 Sum_probs=179.8
Q ss_pred HHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhHHHH
Q 007614 160 LAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQL 238 (596)
Q Consensus 160 l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (596)
..+++-..+++| +|++++|.++....+..++..+...|+..... +. .+++ +++.+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~~-~~~~-------------------~~~~~ 57 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----RS-AARD-------------------KQDIR 57 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-hccC-------------------HHHHH
Confidence 356778888999 99999999999999999988776665433322 21 1111 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChhHHHH
Q 007614 239 SSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLC 318 (596)
Q Consensus 239 ~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (596)
+.....+...++.+++..+ +...+..+++ +++ ...++....+..++..+....+..+++.+|.+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (251)
T PF13440_consen 58 SLLRFSLLVSLLLAVILAI----LAILIAYFFG-DPE------LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALI 126 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHhC-Chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555555444444433332 2233333443 222 4455667778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccchhhHHHhhHHHHHHHHHHHH
Q 007614 319 LGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLI 398 (596)
Q Consensus 319 ~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~~p~~~~~~~~~i 398 (596)
.++..++..++..++.+ .+.+..+..++..++..+..+..+...+++. ..++ + .+.++.++.+.|.....+..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ 201 (251)
T PF13440_consen 127 DIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKL-RLSF--K-FSWRRLLKYGLPFSLSSLLSWL 201 (251)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCc--h-hhHHHHHHHHHHHHHHHHHHHH
Confidence 99998888544444443 3448888999999998888777776544332 2222 2 2233479999999999999999
Q ss_pred HHHHHHHHHHh-hChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 007614 399 TMTLGTSMAAR-QGSDAMAAHQICMQVWLAVS-LLTDALAASGQALIASY 446 (596)
Q Consensus 399 ~~~~~~~l~~~-~g~~~~aa~~i~~~i~~l~~-~~~~~i~~a~~~~vs~~ 446 (596)
....+..+++. +|++++|.|+++.++...+. .+..++++...|.+++.
T Consensus 202 ~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 202 LSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999998 79999999999999999888 88999999999998863
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.46 E-value=7.4e-12 Score=133.48 Aligned_cols=202 Identities=13% Similarity=-0.007 Sum_probs=170.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhh
Q 007614 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLT 215 (596)
Q Consensus 137 ~~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~ 215 (596)
+++..|++++++.|.++.++..++...+|+.++++ +|++++|.|+.+..+.+.+..+...++..+..|.+++. ++
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~- 285 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE- 285 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-
Confidence 45668999999999999999999999999999985 99999999999999988665455667888899998874 22
Q ss_pred hhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHH
Q 007614 216 KDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPA 295 (596)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~ 295 (596)
+++.++.+.+.+.....++++.+++++++++++..++.+++ ++.+..++.++.++.++
T Consensus 286 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l 343 (416)
T PRK15099 286 ------------------KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVL 343 (416)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888888899999999887654 45578899998888888
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007614 296 FVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (596)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~ 366 (596)
...+..+...+.+.++.+......+...+++++++++++. .+|..|+++++.+++.+..++..+...++
T Consensus 344 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~~ 412 (416)
T PRK15099 344 KVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLLY 412 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777777778888888888888888999999999884 58999999999999999998777665443
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.40 E-value=8.3e-11 Score=127.88 Aligned_cols=199 Identities=21% Similarity=0.245 Sum_probs=168.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhh
Q 007614 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (596)
Q Consensus 138 ~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (596)
++..|++++.++|..++.+...+.+.+|+.++++ +|++++|.|+.+..+......+ ...+..+.-|.+++...+++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~-~~~l~~~l~P~~s~~~~~~~-- 285 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIV-ASALNRVLFPALSRAYAEGD-- 285 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHH-HHHHHHHHHHHHHHHHHcCc--
Confidence 5678999999999999999999999999999999 9999999999777777766644 44677888888888876655
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHH
Q 007614 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (596)
.++.++.+.+.+.+..+++++..+.+.++++++...+.+++. ..+...+.+++++.++.
T Consensus 286 -----------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~----~~~~~~l~il~~~~~~~ 344 (480)
T COG2244 286 -----------------RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY----ASAAPILQLLALAGLFL 344 (480)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc----cchhHHHHHHHHHHHHH
Confidence 677778899999999999999999999999999987765542 33888899999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHH
Q 007614 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFL 363 (596)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l 363 (596)
.+.......+++.++.+..++...++.++|++++++++ +.+|..|+++++ .+.....+...+..
T Consensus 345 ~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~~~~~~~~~~~~~ 408 (480)
T COG2244 345 SLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLI--PRFGLIGAAIAT-ASVIALALLLFYIL 408 (480)
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 468999999999 55333333333333
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.1e-06 Score=89.30 Aligned_cols=415 Identities=12% Similarity=0.083 Sum_probs=234.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhh
Q 007614 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (596)
Q Consensus 139 ~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (596)
+......+.+.-.+..+++.++..++-+.++-| ++++.+|..++-..+..-. .-+.++.--+....
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT------------iLFlsREair~A~l- 71 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST------------ILFLSREAIRLAEL- 71 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH------------HHHhhHHHHHHHhc-
Confidence 345566777888889999999999999999998 8988877665543332221 12222221111100
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHH
Q 007614 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (596)
++.++.+++..+..+. .+++..++.+..+.+..+ .+.+....++....+.-..-+.+...++..-.
T Consensus 72 -------~~gs~~~d~~te~~n~----~wlS~~L~~~i~~~~i~~---wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvEL 137 (530)
T KOG2864|consen 72 -------RIGSEPADTWTEFINL----LWLSVPLQTAINVACIYF---WLGFLSSSDEISYSPLYAFAIFIIGLSIVVEL 137 (530)
T ss_pred -------cCCCCCCccHHHHHHh----hhhhhhHHHHHHHHHHHH---HHHHhhccchhhcCchHhHHHHHHHHHHHHHH
Confidence 1111111224444443 344444444433332222 12222111110011222222233333333333
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHH-HHHHHHHHHhc-cCChhHHHHHHHHHHHHHHHHHHH-HHhhcc--cc---
Q 007614 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLA-VFLFPILIYFC-QLGMPGAAISTVVSQYIVAVTMIW-FLNKKV--VL--- 369 (596)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~-i~l~~lli~~~-~~Gv~Gaaiat~is~~~~~~~~~~-~l~~~~--~~--- 369 (596)
+...+.-+.|..-+.+.-.+...+..++. ++...+++.+. .+++..-|+|.......-.+.+.+ |++.++ +.
T Consensus 138 lsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~ 217 (530)
T KOG2864|consen 138 LSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEP 217 (530)
T ss_pred hcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccc
Confidence 33444444555555556666666666666 33333333322 344444555555444444442333 333332 00
Q ss_pred ------CCCCccc----c-chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhh---ChhHHHHHHHHHHHHHHHHH-HHHH
Q 007614 370 ------MPPKMGA----L-QFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ---GSDAMAAHQICMQVWLAVSL-LTDA 434 (596)
Q Consensus 370 ------~~~~~~~----~-~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~---g~~~~aa~~i~~~i~~l~~~-~~~~ 434 (596)
.-|+... . --++..|.........+..++...-+..+++.. +-.+=|.|.+++|.-++..= +...
T Consensus 218 ~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~P 297 (530)
T KOG2864|consen 218 FSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRP 297 (530)
T ss_pred hhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhCh
Confidence 0111111 1 113566666666777777777777666665532 44566778888888665443 3456
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhH
Q 007614 435 LAASGQALIASYVSKGDFKTVREI---TNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPI 511 (596)
Q Consensus 435 i~~a~~~~vs~~~g~~~~~~~~~~---~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~ 511 (596)
+--......++-..+++.++.|+. ....++....+++.....-...++.+..++.+++-........+++++++.++
T Consensus 298 IEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~ 377 (530)
T KOG2864|consen 298 IEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPF 377 (530)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHH
Confidence 777777777887777777766664 44555555555555444445555666666654332122344789999999999
Q ss_pred HHHHHHHhhHHhhcCchHHHHH---HHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHHHhc
Q 007614 512 NALAFIFDGLHYGVSDFRYAAC---SMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSK 580 (596)
Q Consensus 512 ~~~~~~~~~~l~a~g~~~~~~~---~~~~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~ 580 (596)
.+++.+..+.+.+.++.+..-. .+.+.+++.....+.+..++|..|..+|.++.+.++.......+++.
T Consensus 378 lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 378 LAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887754 44555566666777778889999999999999999988776666543
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.92 E-value=1.6e-06 Score=94.19 Aligned_cols=282 Identities=12% Similarity=0.026 Sum_probs=186.0
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhc-cCCh-----hH-HHHHHHHHHHHHHHHHHHHH--hhccc
Q 007614 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC-QLGM-----PG-AAISTVVSQYIVAVTMIWFL--NKKVV 368 (596)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~-~~Gv-----~G-aaiat~is~~~~~~~~~~~l--~~~~~ 368 (596)
++...+..++-..+.+....+..+-.+++..+..+..... +++. .+ +.++..++++.-.+..+... .....
T Consensus 151 ~~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~ 230 (549)
T PF04506_consen 151 LYILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFP 230 (549)
T ss_pred HHHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCc
Confidence 4455677777777777777777777777665544443211 1111 11 23444455544433222211 11111
Q ss_pred -----cCCCCccc-----c-chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHh--h-ChhHHHHHHHHHHHHHHHHHH-HH
Q 007614 369 -----LMPPKMGA-----L-QFGDYVKSGGFLLGRTLAVLITMTLGTSMAAR--Q-GSDAMAAHQICMQVWLAVSLL-TD 433 (596)
Q Consensus 369 -----~~~~~~~~-----~-~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~--~-g~~~~aa~~i~~~i~~l~~~~-~~ 433 (596)
...++... . --++.++.....+...+...+..+-+..++.. + +.++-|.|++++|+-++..=+ ..
T Consensus 231 ~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~ 310 (549)
T PF04506_consen 231 FKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQ 310 (549)
T ss_pred ccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhC
Confidence 11122222 1 12578888889999999999999999988877 4 688899999999998875433 34
Q ss_pred HHHHHHHHHHHHhhcCCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHH
Q 007614 434 ALAASGQALIASYVSKGDF---------KTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLF 504 (596)
Q Consensus 434 ~i~~a~~~~vs~~~g~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i 504 (596)
.+=-+.....++...+++. ++..+.+...+++...+++.+...-...++.+..++.++.-........+++
T Consensus 311 PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~ 390 (549)
T PF04506_consen 311 PIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRA 390 (549)
T ss_pred cHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHH
Confidence 4666666666666654433 4566677777777777777777766777777777765433222235788999
Q ss_pred HHHhhhHHHHHHHHhhHHhhcCchHHHHH---HHHHHHHHHHHHHHHhcc-cCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 505 VSASQPINALAFIFDGLHYGVSDFRYAAC---SMMLVGAMSSTFLLYAPR-ATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (596)
Q Consensus 505 ~~~~~~~~~~~~~~~~~l~a~g~~~~~~~---~~~~~~l~~~~l~~~l~~-~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~ 579 (596)
++...++.+++.+.+..+++..+.+.... .+.+..++.....+.+.. .+|..|+.+|.++.+.++.+.++..+++
T Consensus 391 yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 391 YCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999776644 223334444444455556 5999999999999999999988888755
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.84 E-value=1.4e-07 Score=100.75 Aligned_cols=202 Identities=10% Similarity=0.015 Sum_probs=178.4
Q ss_pred ccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChhH
Q 007614 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLA-VSLLTDALAASGQALIASYVSKGDFKT 454 (596)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l-~~~~~~~i~~a~~~~vs~~~g~~~~~~ 454 (596)
+.+.|++.+++.|..+..+.......+...+++++|+.++++.+++++..+. -+.+..++..+..|..+|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 3567899999999999999999999999999999999999999999988876 445567899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHH
Q 007614 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (596)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 534 (596)
......++..+....++|.+.... +.++|...+..|+++...+..+.++.....+.......+...+++.+++....++
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 999999999999988888876654 4599999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHh--cccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007614 535 MMLVGAMSSTFLLYA--PRATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (596)
Q Consensus 535 ~~~~~l~~~~l~~~l--~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~ 578 (596)
..+..+..+++.+.+ ...+|..|+.++..+++.+.......+..
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~ 228 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAV 228 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhe
Confidence 888887766665544 45688999999999999888877766653
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.69 E-value=3.9e-05 Score=75.10 Aligned_cols=259 Identities=13% Similarity=0.075 Sum_probs=153.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccChh---hhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhh
Q 007614 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSV---ELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKN 213 (596)
Q Consensus 137 ~~~~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG~~---~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~ 213 (596)
....+..+.++-+|..++.++..+...+-+.-++|-.++ .+|+|+++..+.-.+..... ...-++-.++++
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~------~~~~igl~~V~s 79 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLS------MFHHIGLVFVNS 79 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhh------hhHHHHHHHhcc
Confidence 334478899999999999999999998888888873332 38999999888766653222 112222223333
Q ss_pred hhhhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHchHHHH-HhcCCCCCccchhhHHHHHHHHHh
Q 007614 214 LTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIF-EAAALSLASGPFL-NLMGVPSASAMHGPAKKFLMLRAL 291 (596)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~l~~~~~~i~-~~l~~~~~~~~~~~a~~~l~~~~~ 291 (596)
+ +++.+. +.-.....++...+ ..+..-.+...++ ..++.+++ +.+.+...+.++.+
T Consensus 80 ~-------------------rsrr~~-vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~--va~~tr~a~l~L~l 137 (345)
T PF07260_consen 80 K-------------------RSRRKA-VLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPS--VAEKTRRAFLYLTL 137 (345)
T ss_pred h-------------------hhhHHH-HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHH--HHHHHHHHHHHHHH
Confidence 2 222122 22222222222222 1122222333333 46677766 88889999999888
Q ss_pred hHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhc-c--CChhHHHHHHHHHHHH----HHHHHHHHHh
Q 007614 292 GSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC-Q--LGMPGAAISTVVSQYI----VAVTMIWFLN 364 (596)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~-~--~Gv~Gaaiat~is~~~----~~~~~~~~l~ 364 (596)
--++.++....++++-=.+++......++...+..+++..+++... + -+..--.++...+..+ .++.+++.++
T Consensus 138 lPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~ 217 (345)
T PF07260_consen 138 LPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIH 217 (345)
T ss_pred HHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999998777777777777666666565555555321 1 1111111222222211 1122222233
Q ss_pred hccccCCC--CccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-h-C----hhHHHHHHHHHH
Q 007614 365 KKVVLMPP--KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAAR-Q-G----SDAMAAHQICMQ 423 (596)
Q Consensus 365 ~~~~~~~~--~~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~-~-g----~~~~aa~~i~~~ 423 (596)
.+.+.... +.+...+++++++.+|++.......+.--+.+.++++ + | ++++|...+...
T Consensus 218 ~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~yp 284 (345)
T PF07260_consen 218 DIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYP 284 (345)
T ss_pred hhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccC
Confidence 33332322 3344478899999999999999999999999999998 4 3 355555444333
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.52 E-value=9.1e-06 Score=72.92 Aligned_cols=81 Identities=31% Similarity=0.467 Sum_probs=75.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007614 286 LMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNK 365 (596)
Q Consensus 286 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~ 365 (596)
+++++++.++..+....+.++++.||++..++..+++.++|++++++++ +.+|..|+++|+.+++.+..++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999997 56999999999999999999999999988
Q ss_pred ccc
Q 007614 366 KVV 368 (596)
Q Consensus 366 ~~~ 368 (596)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 753
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.22 E-value=0.00032 Score=76.40 Aligned_cols=216 Identities=12% Similarity=0.100 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc--c-ChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhh
Q 007614 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR--L-GSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (596)
Q Consensus 140 ~~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~--l-G~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (596)
..+++++.+.......+.-.+++=-|.+++.. + ..++.|.|++++++-+++.-++-.++--..-...++...+++++
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 45789999999999999999999999999998 4 56789999999999999988777777766667777776554322
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHH
Q 007614 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (596)
++ .++.+.++..+.+...+.+...+++++..+....++.++.+++++.= ....+...+++.+..+|+.
T Consensus 331 ~~----------~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~~l 398 (549)
T PF04506_consen 331 KK----------QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIPFL 398 (549)
T ss_pred hh----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHHHHH
Confidence 11 11223577788899999999999999888888888999988865532 2344678899999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHH---HHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007614 297 VVSLALQGIFRGFKDTKTPVL---CLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV 368 (596)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~---~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~ 368 (596)
+++.+..++.++....+.... ..++..++.++.+++|+.. ++|..|..+|+.+...+-.+..++++++...
T Consensus 399 a~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 399 AINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred HHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998877655443 3444556667778888866 7999999999999999999999999876543
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.05 E-value=0.0017 Score=64.40 Aligned_cols=186 Identities=18% Similarity=0.221 Sum_probs=114.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 007614 383 VKSGGFLLGRTLAVLITMTLGTSMAAR-QGSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVREITN 460 (596)
Q Consensus 383 lk~~~p~~~~~~~~~i~~~~~~~l~~~-~g~~~~aa~~i~~~i~~l~~~~-~~~i~~a~~~~vs~~~g~~~~~~~~~~~~ 460 (596)
+|...+.....+...+...+...++.+ +|+++.+.++....+..+...+ ..|+.++..-.+++...+ .+..++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 455667777777776666666655555 5999999999999999988877 577888887777776543 233333433
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHHHHHHH
Q 007614 461 FVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGA 540 (596)
Q Consensus 461 ~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~l 540 (596)
......++.++. .+....+.. .+. +++... .+........++..+.......+++.++.+..........+
T Consensus 80 ~~~~~~~~~~~i-~~~~~~~~~----~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSLI-FLLILLIAS----FFG-NPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHH-HHHHHHHHH----HcC-CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 222222222 333 332211 11222222225677888889999999999888877766655
Q ss_pred HHHHHHHHhc-ccCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 541 MSSTFLLYAP-RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (596)
Q Consensus 541 ~~~~l~~~l~-~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~ 579 (596)
....+.+.+. ...++.+..++..++.++..++..+.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332222 23448888899999998887777777653
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.96 E-value=3.9e-05 Score=68.76 Aligned_cols=80 Identities=5% Similarity=-0.007 Sum_probs=74.7
Q ss_pred HHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007614 502 VLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (596)
Q Consensus 502 l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~ 581 (596)
+++++++.++.++......++++.||+|..+..+.+..+++..+++.+.+.+|..|+++++.+++++..++..+..+++.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~ 81 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKKI 81 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999998888886644
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.88 E-value=0.0037 Score=61.24 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=105.6
Q ss_pred HHHHHHHhhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007614 402 LGTSMAARQGSDAMAAHQICMQVWLAVSLLT-DALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLS 480 (596)
Q Consensus 402 ~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~-~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 480 (596)
....+...+|+++.+.|+....+..+...+. .++.+...- ..++|.++.++..........+.++...+.....
T Consensus 7 ~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PF13440_consen 7 FLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILI 81 (251)
T ss_pred HHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555579999999999999988887764 455444333 2346667777777666665555444444332222
Q ss_pred hhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHHHHHHHHHHHHH-HHhcccCChhHHH
Q 007614 481 FGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFL-LYAPRATGLPGVW 559 (596)
Q Consensus 481 ~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~l~~~~l~-~~l~~~~Gi~Gi~ 559 (596)
.. .+ .+++ ...++.++++..++..+.......+++.+|.+.......+..+...... .......+..+..
T Consensus 82 ~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (251)
T PF13440_consen 82 AY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSIL 152 (251)
T ss_pred HH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 22 33 3332 2345566667777888899999999999999998877766655442221 1222234788888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007614 560 AGLTLFMGLRTVAGFVRLL 578 (596)
Q Consensus 560 ~a~~i~~~v~~~~~~~~l~ 578 (596)
++..++.++..+..+...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 153 LAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888888887776666543
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.0094 Score=61.39 Aligned_cols=210 Identities=14% Similarity=0.126 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc---cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhh
Q 007614 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR---LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (596)
Q Consensus 141 ~k~l~~~a~p~~~~~l~~~l~~~vd~~~ig~---lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (596)
-+++.+...-.....++-.+++=-|.+++.- +.-.+.|.|.+.+++-.++..++-.++-=..-.+.+|...+++.+|
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 3556666666677777777777777787773 4445667788888887777766666666666677777766665333
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchhhHHHHHHHHHhhHHHHH
Q 007614 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (596)
.+++..+....+.+...+++.++.+....+++.+.+++++.= ....+...++|.+..+|+.+
T Consensus 318 ----------------~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~lL~~YclYI~~lA 379 (530)
T KOG2864|consen 318 ----------------VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSLLLSWYCLYIPFLA 379 (530)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchHHHHHHHHHHHHHH
Confidence 688888999999999999999888888888999999887653 23446688999999999999
Q ss_pred HHHHHHHHHhhcCCChhH---HHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 007614 298 VSLALQGIFRGFKDTKTP---VLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLM 370 (596)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~---~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaaiat~is~~~~~~~~~~~l~~~~~~~ 370 (596)
++.+..+++.+....+.. -....+..++.++++++++-. +|..|..+|.++...+-.+..+.++++..+..
T Consensus 380 iNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~ 453 (530)
T KOG2864|consen 380 INGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRDL 453 (530)
T ss_pred hccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999887755433 234455667778889999976 56699999999998888888887776654433
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.64 E-value=0.092 Score=52.98 Aligned_cols=343 Identities=12% Similarity=0.033 Sum_probs=181.8
Q ss_pred HHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchH
Q 007614 185 SIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASG 264 (596)
Q Consensus 185 ~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 264 (596)
....++..+++.|+....+.+++...=+++ .++....+--...+....+.++..++.
T Consensus 67 ~Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~-------------------~~kIlpsy~Gvi~lv~~~a~~ig~~vf---- 123 (467)
T COG4267 67 TYCFIFSQIITGGFQLIITRFISDCLFEKK-------------------QRKILPSYIGVILLVTLVAGVIGLIVF---- 123 (467)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------------HHHHhHhHHHHHHHHHHHHHHHHHHhh----
Confidence 344455556666777777888776654333 344444444444333333333332111
Q ss_pred HHHHhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhccCChhHH
Q 007614 265 PFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGA 344 (596)
Q Consensus 265 ~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Ga 344 (596)
....+. ...|=...+.........-....++.+.++.+...+.-.++.++.+++..++- ++++.|.
T Consensus 124 ----~~~~~~-------si~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~l 189 (467)
T COG4267 124 ----FVNNQY-------SIVYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGL 189 (467)
T ss_pred ----hhcCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHH
Confidence 112121 12222233444455566667778899999999999999999999998888776 4689999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-CCCCccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhh--ChhHH------
Q 007614 345 AISTVVSQYIVAVTMIWFLNKKVVL-MPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ--GSDAM------ 415 (596)
Q Consensus 345 aiat~is~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~--g~~~~------ 415 (596)
.++..++..+..++...++.|..+. .+-.++... ..+--..+++-.....+.-++++.+.=.. |....
T Consensus 190 LL~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL~---~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S 266 (467)
T COG4267 190 LLTLDIGIFIILFLLNFYILRYFKSSRRIGFDFLL---YRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFAS 266 (467)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcccccccceehhh---hhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecc
Confidence 9999999999999888887664321 111222221 11111223333344445555555443111 11111
Q ss_pred HHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHH----hhcCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007614 416 AAHQICMQVWLA---VSLLT--DALAASGQALIAS----YVSKG-------DFKTVREITNFVLKIGVLTGVSLATILGL 479 (596)
Q Consensus 416 aa~~i~~~i~~l---~~~~~--~~i~~a~~~~vs~----~~g~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 479 (596)
--|.+..-...+ +.++. ..+-+..++.--+ --+.+ +.++....+++.+.-.+-+-...++.+++
T Consensus 267 ~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~fl 346 (467)
T COG4267 267 PLYDVPIFYAYLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFL 346 (467)
T ss_pred hhhhHHHHHHHHHhcchhheeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222111111 12111 1122222222111 11112 22333344555555555566677888889
Q ss_pred hhhhhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCchHHHHHHHHHHHHHHHHHHHH---hcccCChh
Q 007614 480 SFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLY---APRATGLP 556 (596)
Q Consensus 480 ~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~l~~~~l~~~---l~~~~Gi~ 556 (596)
+++.+...|.-++ ...+...+-.++..+......+-.+.--.++-+..+..+....+.+..+.++ +.+.+--.
T Consensus 347 L~~~Ll~~~~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~ 422 (467)
T COG4267 347 LADALLLWFGLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGPGYYGV 422 (467)
T ss_pred HHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccceeh
Confidence 9999888776443 3344555555555555555555555556666666666555544444444433 33445455
Q ss_pred HHHHHHHHHHHHHHH
Q 007614 557 GVWAGLTLFMGLRTV 571 (596)
Q Consensus 557 Gi~~a~~i~~~v~~~ 571 (596)
|..+|..+...+...
T Consensus 423 gff~a~fl~vlv~~~ 437 (467)
T COG4267 423 GFFLASFLYVLVAFK 437 (467)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777776666555444
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.74 E-value=0.43 Score=47.46 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=101.5
Q ss_pred cchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 007614 377 LQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQG---SDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (596)
Q Consensus 377 ~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g---~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~ 453 (596)
.+..++.++-.|+.++.++..+.-.+.+.-+++-. .+.+|+|+++..+.-++..+...+-+....++ +++.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V-----~s~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFV-----NSKRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHh-----cchhh
Confidence 35678899999999999999998888887777642 35689999999998888777777766555543 33322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhhh-hhhcccCCChHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHhhcCc
Q 007614 454 TVREITNFVLKIGVLTGVSLATI-----LGLSFG-SLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSD 527 (596)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~-----l~~~~~-~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~ 527 (596)
++..... ..+.++..+++ .--+.. -+..++.-|+++.+.+...+.++.+..+++++....+|++.=.++
T Consensus 83 --rr~~vl~---~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~ 157 (345)
T PF07260_consen 83 --RRKAVLC---MAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRH 157 (345)
T ss_pred --hHHHHHH---HHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Confidence 2222222 22223333222 112222 234455678999999999999999999999999999998884444
Q ss_pred hHHHHHHHHH
Q 007614 528 FRYAACSMML 537 (596)
Q Consensus 528 ~~~~~~~~~~ 537 (596)
+.......+.
T Consensus 158 s~iV~~aSI~ 167 (345)
T PF07260_consen 158 SWIVGSASIA 167 (345)
T ss_pred eeEeehHHHH
Confidence 4444344433
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=87.69 E-value=36 Score=35.02 Aligned_cols=131 Identities=12% Similarity=0.057 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhhh
Q 007614 431 LTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQP 510 (596)
Q Consensus 431 ~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~ 510 (596)
+..+++....-.+++++=++|.+++.....-.+.+....+..++..++ +.+++ .....+ ...+...+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk--~l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYK--ILACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHH--HHHHHHHH
Confidence 345677777777888887777777777666665555555444443111 12222 122222 33444555
Q ss_pred HHHHHHHHhhHHhhcCchHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHH
Q 007614 511 INALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFV 575 (596)
Q Consensus 511 ~~~~~~~~~~~l~a~g~~~~~~~~~~~~~l~~~~l~~~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~ 575 (596)
..+...+....+.+++|.+....+..++-++...+..+ ..+.++.|.-++..++..+..+....
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~-~~~~~ie~lLL~~~IGi~~i~~l~~~ 206 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARL-FLKSPIEGLLLTLDIGIFIILFLLNF 206 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHhHHHHHHHHHH
Confidence 66777788888999999999988888777666655533 46689999999999998766554333
No 47
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=60.45 E-value=2.7e+02 Score=30.68 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhccC--hhhhhhhhhHHHHHHHHHHH
Q 007614 144 LIVLTLPAIAGQVIDPLAQLMETAYVGRLG--SVELASAGVSISIFNIVSKL 193 (596)
Q Consensus 144 l~~~a~p~~~~~l~~~l~~~vd~~~ig~lG--~~~laa~~~a~~i~~~~~~~ 193 (596)
+.++-.-..++++.+.+..+.-.+++.++. +..++.+..+..++.++..+
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl 63 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSL 63 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 444445566777788887777777777743 23355666666666655433
No 48
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=51.95 E-value=2.1e+02 Score=26.96 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 007614 559 WAGLTLF 565 (596)
Q Consensus 559 ~~a~~i~ 565 (596)
|...+++
T Consensus 181 ~~~iiig 187 (206)
T PF06570_consen 181 WVYIIIG 187 (206)
T ss_pred HHHHHHH
Confidence 3333443
No 49
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=46.96 E-value=1.6e+02 Score=32.05 Aligned_cols=44 Identities=2% Similarity=0.093 Sum_probs=33.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchH-HHHHhcC
Q 007614 228 PPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASG-PFLNLMG 271 (596)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~-~i~~~l~ 271 (596)
+|.++..+.+.+-+-.+..++.+++....+.+....+ .+-..+.
T Consensus 276 EE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~n 320 (550)
T KOG1289|consen 276 EETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLN 320 (550)
T ss_pred HHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhc
Confidence 3667778888888888888898988888877777777 4444444
No 50
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=46.14 E-value=3.7e+02 Score=28.13 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=32.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 007614 450 GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPL 487 (596)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~l 487 (596)
.+.++.+++.+++.+.+++......+++....-|+...
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999888888888877763
No 51
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=44.83 E-value=1.1e+02 Score=24.21 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 007614 436 AASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVS 472 (596)
Q Consensus 436 ~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 472 (596)
+......+-+.+.+||++++++..++..+++.+-.+.
T Consensus 37 Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 37 AIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3334445677888999999999999998888654443
No 52
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=41.90 E-value=4.5e+02 Score=27.88 Aligned_cols=81 Identities=10% Similarity=-0.033 Sum_probs=41.5
Q ss_pred CccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 007614 373 KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (596)
Q Consensus 373 ~~~~~~~~~~lk~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~~aa~~i~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~ 452 (596)
+.+.++.++.++.++|.++..+.. +...+.+...+.+.+++++..-+.-... + +.+-+.
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~p~ii-----l~~i~~g~~t~teaa~~~~~~~l~i~~~-------------~---~~~~~~ 261 (416)
T PF06808_consen 203 RASLKERWRAFKRAIPALLIPVII-----LGGIYLGIFTPTEAAAVAVVYALVIGLF-------------V---YRRLSW 261 (416)
T ss_pred cchHHHHHHHHHhcchHHHHHHHH-----HHHhhhcccchhhhhhhhHHHHHHHHHh-------------h---hcccCh
Confidence 344445556666666554433221 2223344456666666655444321000 0 455666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007614 453 KTVREITNFVLKIGVLTGVSLA 474 (596)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~ 474 (596)
++..+....+.+.+..+...++
T Consensus 262 ~~l~~~l~~~~~~~~~i~~iia 283 (416)
T PF06808_consen 262 KDLWRALVETARTTGMILFIIA 283 (416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 7777777777776665444333
No 53
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=38.85 E-value=2.7e+02 Score=24.48 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=12.9
Q ss_pred chhhHHHhhHHHHHHHHHHHHHH
Q 007614 378 QFGDYVKSGGFLLGRTLAVLITM 400 (596)
Q Consensus 378 ~~~~~lk~~~p~~~~~~~~~i~~ 400 (596)
+.++-+|.+.-.+...+...+..
T Consensus 102 ~~~~A~~~~~ga~~g~~~g~~~k 124 (140)
T PF04306_consen 102 DFRRALRAGIGALVGFLAGTLIK 124 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555544433
No 54
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=38.41 E-value=6.8e+02 Score=28.93 Aligned_cols=6 Identities=50% Similarity=0.567 Sum_probs=2.2
Q ss_pred hHHhhh
Q 007614 165 ETAYVG 170 (596)
Q Consensus 165 d~~~ig 170 (596)
|...++
T Consensus 182 d~~~is 187 (742)
T TIGR01299 182 EVFVVG 187 (742)
T ss_pred HHHHHH
Confidence 333333
No 55
>PF13347 MFS_2: MFS/sugar transport protein
Probab=38.14 E-value=5e+02 Score=27.28 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=11.9
Q ss_pred hhHHhhcCchHHHHHHHHHHHH
Q 007614 519 DGLHYGVSDFRYAACSMMLVGA 540 (596)
Q Consensus 519 ~~~l~a~g~~~~~~~~~~~~~l 540 (596)
..+.+=.|+.+......++..+
T Consensus 281 ~~l~~r~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 281 GRLSKRFGKKKVYIIGLLLAAL 302 (428)
T ss_pred HHHHHHccceeehhhhHHHHHH
Confidence 4444555776665555554444
No 56
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=30.79 E-value=4.1e+02 Score=24.04 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCC
Q 007614 439 GQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKD 491 (596)
Q Consensus 439 ~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d 491 (596)
..-.+.+.++.+++++.-......++....+..|+...+..+.+.+.+.+..+
T Consensus 102 f~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~ 154 (183)
T PF01595_consen 102 FGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIE 154 (183)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34456888899999999999999999999999999999999999999988654
No 57
>PTZ00370 STEVOR; Provisional
Probab=30.31 E-value=1.8e+02 Score=28.78 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCCCccccccc
Q 007614 557 GVWAGLTLFMGLRTV-AGFVRLLSKSGPWWFLHTD 590 (596)
Q Consensus 557 Gi~~a~~i~~~v~~~-~~~~~l~~~~~~w~~~~~~ 590 (596)
|++.-.++-..+..+ +.+|..|+|+..|+++-++
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 443334444444444 4444445577789877655
No 58
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=27.59 E-value=7.3e+02 Score=25.95 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Q 007614 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLN 268 (596)
Q Consensus 234 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~ 268 (596)
+++.+++.+.+...+.+...+..+++....-|+..
T Consensus 90 e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 90 ESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999888888877777776
No 59
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.80 E-value=3.3e+02 Score=26.00 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCc-------cchhhHHHHHHHHHhhHHHHH
Q 007614 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSAS-------AMHGPAKKFLMLRALGSPAFV 297 (596)
Q Consensus 234 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~~-------~~~~~a~~~l~~~~~~~~~~~ 297 (596)
++.....+..++...+++.+++++++.+ ..++..+++.+.-. +-.+-...|+++++.++|-..
T Consensus 143 y~k~~k~~~~gi~aml~Vf~LF~lvmt~-g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 143 YQKRQKSMYKGIGAMLFVFMLFALVMTI-GSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHh-cccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 5566666777777666666665555544 44555566543210 011224566666666655544
No 60
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.69 E-value=1e+02 Score=30.39 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCCccccc
Q 007614 557 GVWAGLTLFMGLRTVA-GFVRLLSKSGPWWFLH 588 (596)
Q Consensus 557 Gi~~a~~i~~~v~~~~-~~~~l~~~~~~w~~~~ 588 (596)
|++.-.++-..+..++ .+|..|+|+..|+++-
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~swkhe~ 294 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKKSWKHEC 294 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 4333344444444444 4444445677888653
No 61
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=23.51 E-value=1.1e+03 Score=26.53 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccCCCh
Q 007614 462 VLKIGVLTGVSLATILGLSFGSLAPLFTKDP 492 (596)
Q Consensus 462 ~l~~~~~~~~~~~~~l~~~~~~i~~lf~~d~ 492 (596)
.+.++++.+........+.+..+..+|++|+
T Consensus 315 ~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~ 345 (599)
T PF06609_consen 315 LLVISFISGMNFFSVNILWPQQVVNVFGSDP 345 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 3344445555555555677888888888876
No 62
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=22.65 E-value=1.4e+03 Score=27.57 Aligned_cols=26 Identities=4% Similarity=-0.150 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHH
Q 007614 299 SLALQGIFRGFKDTKTPVLCLGIGNL 324 (596)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~~~~~v 324 (596)
...+..+....++.+...+......+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~i 150 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIV 150 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHH
Confidence 34455555556666655555554443
No 63
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=22.39 E-value=5.3e+02 Score=26.86 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhHHhhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhhhhhhhhcccCCCCCC
Q 007614 150 PAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKP 228 (596)
Q Consensus 150 p~~~~~l~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~ 228 (596)
-.+..++++.+.+.+-+.+.-+ +|+..++. |.....++..+|. -++++.++.-.
T Consensus 62 iLIGNNLvNilasalaT~~~irl~Gd~GvaI---At~~mT~vilvFa--------EVlPKt~Aa~~-------------- 116 (423)
T COG4536 62 ILIGNNLVNILASALATILGIRLYGDAGVAI---ATGVLTFVILVFA--------EVLPKTIAALY-------------- 116 (423)
T ss_pred eeecccHHHHHHHHHHHHHHHHHhccchHHH---HHHHHHHHHHHHH--------HhcchHHhhhC--------------
Confidence 3455566666655555555555 67766443 3333333332322 23344455444
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCC
Q 007614 229 PNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSA 275 (596)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~i~~~l~~~~~ 275 (596)
+++.....+..+.....+..++..++-.+..-+++++|.+.+
T Consensus 117 -----perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~ 158 (423)
T COG4536 117 -----PERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLD 158 (423)
T ss_pred -----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 566666666666666667777777777788888899887765
No 64
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.93 E-value=1.4e+02 Score=25.68 Aligned_cols=23 Identities=9% Similarity=-0.146 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 007614 555 LPGVWAGLTLFMGLRTVAGFVRL 577 (596)
Q Consensus 555 i~Gi~~a~~i~~~v~~~~~~~~l 577 (596)
+.|+.+|.+.+.+...++.++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHH
Confidence 44555555555444333333343
No 65
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.71 E-value=1.3e+02 Score=25.77 Aligned_cols=26 Identities=4% Similarity=0.101 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007614 342 PGAAISTVVSQYIVAVTMIWFLNKKV 367 (596)
Q Consensus 342 ~Gaaiat~is~~~~~~~~~~~l~~~~ 367 (596)
.|+.+|.+++.+...++..|+++|++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444554444444445555443
No 66
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=21.05 E-value=5.9e+02 Score=22.62 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007614 451 DFKTVREITNFVLKIGVLTGVSLATILG 478 (596)
Q Consensus 451 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 478 (596)
+.++-++..++...+++.++++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777666655
Done!