Query 007614
Match_columns 596
No_of_seqs 294 out of 1736
Neff 9.1
Searched_HMMs 13730
Date Mon Mar 25 06:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007614.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007614hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 32.4 1.7E+02 0.012 26.2 17.3 26 338-363 406-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 23.9 2.4E+02 0.017 25.1 36.6 30 548-577 402-431 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 15.0 3.3E+02 0.024 23.2 30.0 37 549-586 372-408 (417)
4 d1lghb_ f.3.1.1 (B:) Light-har 8.4 1.5E+02 0.011 17.8 2.8 32 234-265 11-42 (43)
5 d1nkzb_ f.3.1.1 (B:) Light-har 5.6 3E+02 0.022 16.0 4.4 34 451-484 7-40 (41)
6 d1pv7a_ f.38.1.2 (A:) Lactose 5.0 8E+02 0.058 20.3 15.9 27 339-365 376-402 (417)
7 d1xmec1 f.23.9.1 (C:2-34) Bact 4.9 1.7E+02 0.012 15.8 1.5 8 551-558 21-28 (33)
8 d2yvxa3 f.57.1.1 (A:276-448) M 4.6 7.2E+02 0.053 19.3 6.3 22 237-258 77-98 (173)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 3.9 3.4E+02 0.025 14.4 3.1 15 558-572 15-29 (34)
10 d1jo5a_ f.3.1.1 (A:) Light-har 3.7 2.4E+02 0.018 17.2 1.8 32 234-265 16-47 (48)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=32.37 E-value=1.7e+02 Score=26.24 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=13.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHH
Q 007614 338 QLGMPGAAISTVVSQYIVAVTMIWFL 363 (596)
Q Consensus 338 ~~Gv~Gaaiat~is~~~~~~~~~~~l 363 (596)
..|..+..+.......+..++.+...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655555544444444444444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=23.93 E-value=2.4e+02 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.032 Sum_probs=16.8
Q ss_pred HhcccCChhHHHHHHHHHHHHHHHHHHHHH
Q 007614 548 YAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (596)
Q Consensus 548 ~l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l 577 (596)
.+...+|..+..+......++..++.+...
T Consensus 402 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 402 YTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777766655555555555444443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=14.98 E-value=3.3e+02 Score=23.22 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=18.7
Q ss_pred hcccCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 007614 549 APRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWF 586 (596)
Q Consensus 549 l~~~~Gi~Gi~~a~~i~~~v~~~~~~~~l~~~~~~w~~ 586 (596)
+...+|....++...+..++..++.++.+ ++.++...
T Consensus 372 l~~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 408 (417)
T d1pv7a_ 372 MYESIGFQGAYLVLGLVALGFTLISVFTL-SGPGPLSL 408 (417)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHS-CCSSCTTH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHhh-cCCCccch
Confidence 33456766665555544454555555554 33344433
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=8.37 E-value=1.5e+02 Score=17.82 Aligned_cols=32 Identities=3% Similarity=-0.167 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 007614 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGP 265 (596)
Q Consensus 234 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~ 265 (596)
.++...++.+++..-..++++.-++.+...|+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46677788888887777777766666655443
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.61 E-value=3e+02 Score=15.97 Aligned_cols=34 Identities=3% Similarity=-0.229 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007614 451 DFKTVREITNFVLKIGVLTGVSLATILGLSFGSL 484 (596)
Q Consensus 451 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i 484 (596)
+-+++.+.+..+.++...+.++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3467888888899988888887777766666554
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.02 E-value=8e+02 Score=20.30 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=10.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007614 339 LGMPGAAISTVVSQYIVAVTMIWFLNK 365 (596)
Q Consensus 339 ~Gv~Gaaiat~is~~~~~~~~~~~l~~ 365 (596)
.|...+.+...+-..+..++.++.+++
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 454444333333333333344444333
No 7
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.87 E-value=1.7e+02 Score=15.79 Aligned_cols=8 Identities=25% Similarity=0.048 Sum_probs=3.2
Q ss_pred ccCChhHH
Q 007614 551 RATGLPGV 558 (596)
Q Consensus 551 ~~~Gi~Gi 558 (596)
+++|+..+
T Consensus 21 fw~gv~av 28 (33)
T d1xmec1 21 FWLGVYAV 28 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.55 E-value=7.2e+02 Score=19.28 Aligned_cols=22 Identities=5% Similarity=-0.075 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007614 237 QLSSVSTALLLAVGIGIFEAAA 258 (596)
Q Consensus 237 ~~~~~~~~l~~~l~~~~~~~~~ 258 (596)
..+.+.+=+...++.++..+++
T Consensus 77 ~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 77 WRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544443
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=3.91 E-value=3.4e+02 Score=14.39 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 007614 558 VWAGLTLFMGLRTVA 572 (596)
Q Consensus 558 i~~a~~i~~~v~~~~ 572 (596)
-|+++.+.+++.++.
T Consensus 15 gwlafslamlfvfia 29 (34)
T d1xmeb2 15 GWLAFSLAMLFVFIA 29 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 466666666554443
No 10
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.74 E-value=2.4e+02 Score=17.21 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 007614 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGP 265 (596)
Q Consensus 234 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~ 265 (596)
.++...++-+++.+-..++++.-++.+...|+
T Consensus 16 A~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 16 AQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45666777777777777777766666655443
Done!