BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007615
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 144/337 (42%), Gaps = 35/337 (10%)
Query: 80 VYFVGPQFISMRFISSHVHD--DASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIG 137
VYF+ P ++ ++ + D D + + + + P K+ + V + T+
Sbjct: 71 VYFIEPTEENLDYV---IRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLK 127
Query: 138 EYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLW---HIAKAIHKLEFTFGLIPNVRAK 194
E +P + V F L+ H Q G SS + H+ + + L T + P VR
Sbjct: 128 EINTLFIPKEHRV--FTLNEPHGLVQYYGSRSSSYNIDHLVRRLSTLCTTMNVAPIVRYS 185
Query: 195 GKASVRVAEILNRMQTEEPVSLSD--MNIPE---INTLVLIDREVDMVTPMCSQLTYEGL 249
++ + ++Q E +S+S +N E + +++DR VD+ +P+ +LTY+
Sbjct: 186 STSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSPLVHELTYQAA 245
Query: 250 VDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKAT 309
+ L I N G ++Q + +V L D ++ ++R L+ + +V R+
Sbjct: 246 AYDLLNIENDIYSYSTVDAGGREQ---QRQVVLGEDDDIWLQMRHLH---ISEVFRK--- 296
Query: 310 SMKQDYTEVTTMSQTVSELKDFVK---KLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDM 366
+K + E ++ + L+D + +L +M + +L QH + LDM
Sbjct: 297 -VKSSFDEFCVSARRLQGLRDSQQGEGGAGALKQMLK--DLPQHREQMQ---KYSLHLDM 350
Query: 367 EHTIIEA--QSYDICFEYIEEMIHKQEPLNKVLRLLI 401
+ I A + D C + + ++ ++E +R I
Sbjct: 351 SNAINMAFSSTIDSCTKAEQNIVTEEEQDGNKVRDFI 387
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 153/348 (43%), Gaps = 62/348 (17%)
Query: 36 KCLVIDPKLSGSLSLIVPTSTLKEYGI---ELRLLSAEPVQTDCAKVVYFVGPQFISMRF 92
K +++D + LS + L E GI E + EPV+ K +YF+ P + +
Sbjct: 33 KIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQ--MKALYFISP---TPKS 87
Query: 93 ISSHVHDDASKGLQRE-----YFLYFVP-----RRSVACEKILEEEKVHNLMTIGEYPLY 142
+ + D SK ++ YF F P + +C K + K E +
Sbjct: 88 VDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKASCSKSIRRCK--------EINIS 139
Query: 143 MVPLDEDVLSFEL-DLAHKEWQVDGDASS-----LWHIAKAIHKLEFTFGLIPNVRAKGK 196
+P + V + ++ D + + D +S + +A+ I + T P VR K K
Sbjct: 140 FIPQESQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSK 199
Query: 197 A---SVRVAEILNRMQTEEPVSLSDMNIPEINT---LVLIDREVDMVTPMCSQLTYEGLV 250
+ ++A+++ + + E+ + + + + T L++IDR D V+ + +LT++ +
Sbjct: 200 PLDNASKLAQLVEK-KLEDYYKIDEKGLIKGKTQSQLLIIDRGFDPVSTVLHELTFQAMA 258
Query: 251 DEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVL------ 304
+ L I N + + + DGK+ + L D L+ +R + VV++ +
Sbjct: 259 YDLLPIENDTYKY--------KTDGKEKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMKE 310
Query: 305 ---RQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQ 349
+KAT K T ++ ++Q + ++ F K+++ + H+NLA+
Sbjct: 311 ISSTKKATEGK---TSLSALTQLMKKMPHFRKQIS---KQVVHLNLAE 352
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 91/189 (48%), Gaps = 15/189 (7%)
Query: 171 LWHIAKAIHKLEFTFGLIPNVRAKG--KASVRVAEI----LNRMQTEEPVSLSDMNIPEI 224
L +A+ I L T P VR +G K + +A++ L+ + ++P ++ +
Sbjct: 181 LERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDP-TMGEGPDKAR 239
Query: 225 NTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNS 284
+ L+++DR D +P+ +LT++ + + L I N + + S +G + + +V L+
Sbjct: 240 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIG----EARVKEVLLDE 295
Query: 285 SDKLFKEIRDLNF----EVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPE 340
D L+ +R + + V + L+ ++S + + E TTM LK + L +
Sbjct: 296 DDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSK 355
Query: 341 MTRHINLAQ 349
+ H++LA+
Sbjct: 356 YSTHLHLAE 364
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 91/189 (48%), Gaps = 15/189 (7%)
Query: 171 LWHIAKAIHKLEFTFGLIPNVRAKG--KASVRVAEI----LNRMQTEEPVSLSDMNIPEI 224
L +A+ I L T P VR +G K + +A++ L+ + ++P ++ +
Sbjct: 169 LERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDP-TMGEGPDKAR 227
Query: 225 NTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNS 284
+ L+++DR D +P+ +LT++ + + L I N + + S +G + + +V L+
Sbjct: 228 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIG----EARVKEVLLDE 283
Query: 285 SDKLFKEIRDLNF----EVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPE 340
D L+ +R + + V + L+ ++S + + E TTM LK + L +
Sbjct: 284 DDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSK 343
Query: 341 MTRHINLAQ 349
+ H++LA+
Sbjct: 344 YSTHLHLAE 352
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/235 (19%), Positives = 105/235 (44%), Gaps = 26/235 (11%)
Query: 133 LMTIGEYPLYMVPLDEDVLSFE----LDLAHKEWQVDGDASSLWHIAKAIHKLEFTFGLI 188
+ T+ E + +P + + S + + + + G + A+ I L T G
Sbjct: 124 IKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEY 183
Query: 189 PNVRAKG----KASVR--VAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCS 242
P+VR + AS V + L+ + ++P ++ + + + L+++DR D ++P+
Sbjct: 184 PSVRYRSDFDENASFAQLVQQKLDAYRADDP-TMGEGPQKDRSQLLILDRGFDPISPLLH 242
Query: 243 QLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQ 302
+LT++ + + L I N + + + + +V L+ D L+ E+R + VV Q
Sbjct: 243 ELTFQAMAYDLLPIENDVYKY----VNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQ 298
Query: 303 VLRQKATSMKQ--------DYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQ 349
+ +K D + +SQ + ++ + K+L+ + + H++LA+
Sbjct: 299 NVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELS---KYSTHLHLAE 350
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 99/234 (42%), Gaps = 24/234 (10%)
Query: 133 LMTIGEYPLYMVPLDEDVLSFE----LDLAHKEWQVDGDASSLWHIAKAIHKLEFTFGLI 188
+ T+ E + +P + + S + + + + G + A+ I L T G
Sbjct: 124 IKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEY 183
Query: 189 PNVRAKG----KASVR--VAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCS 242
P+VR + AS V + L+ + ++P + + + + L+++DR D ++P+
Sbjct: 184 PSVRYRSDFDENASFAQLVQQKLDAYRADDP-TXGEGPQKDRSQLLILDRGFDPISPLLH 242
Query: 243 QLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQ 302
+LT++ + L I N + + + + +V L+ D L+ E R + VV Q
Sbjct: 243 ELTFQAXAYDLLPIENDVYKY----VNTGGNEVPEKEVLLDEKDDLWVEXRHQHIAVVSQ 298
Query: 303 VLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTR-------HINLAQ 349
+ +K + T + + +KD + L P+ + H++LA+
Sbjct: 299 NVTKKLKQFADEKRXGTAADK--AGIKDLSQXLKKXPQYQKELSKYSTHLHLAE 350
>pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a
Length = 367
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 124 ILEEEKVHNLMTIGEY--PLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHKL 181
+L ++KVH L Y P Y P ++V+ F ++ A + ++ A +
Sbjct: 153 LLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVCG-------- 204
Query: 182 EFTFGLIPNVRAKGKASVRVAEILNR---MQTEEPVSLSDMNIPEINTLVLIDREVDMV- 237
T+ + K K + +A++L M E+ +L +NIPEIN+L+ D +V
Sbjct: 205 --TYSI-----GKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCSSLVH 257
Query: 238 -TPMCSQLTYEGL 249
PM Q+ ++GL
Sbjct: 258 LLPM-MQINFKGL 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,185,196
Number of Sequences: 62578
Number of extensions: 646215
Number of successful extensions: 1629
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1624
Number of HSP's gapped (non-prelim): 17
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)