Query 007615
Match_columns 596
No_of_seqs 163 out of 1039
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 13:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1302 Vacuolar sorting prote 100.0 1E-103 3E-108 816.0 49.4 576 1-591 1-599 (600)
2 PF00995 Sec1: Sec1 family; I 100.0 1.4E-91 3E-96 781.2 33.5 539 35-591 1-564 (564)
3 KOG1300 Vesicle trafficking pr 100.0 1E-82 2.3E-87 657.7 44.7 548 16-592 2-582 (593)
4 COG5158 SEC1 Proteins involved 100.0 1E-79 2.2E-84 649.7 42.8 550 16-594 3-577 (582)
5 KOG1299 Vacuolar sorting prote 100.0 8.8E-78 1.9E-82 599.6 41.9 522 18-593 4-547 (549)
6 KOG1301 Vesicle trafficking pr 100.0 9E-76 2E-80 592.3 35.7 544 13-593 8-613 (621)
7 PF12327 FtsZ_C: FtsZ family, 44.5 60 0.0013 26.9 5.4 40 540-579 34-76 (95)
8 PRK08883 ribulose-phosphate 3- 34.6 56 0.0012 31.7 4.4 40 544-589 167-206 (220)
9 PF14071 YlbD_coat: Putative c 34.6 26 0.00057 30.4 1.8 14 280-293 32-45 (124)
10 PLN02334 ribulose-phosphate 3- 34.3 46 0.001 32.4 3.8 38 546-589 176-213 (229)
11 PRK05581 ribulose-phosphate 3- 33.9 56 0.0012 31.3 4.3 40 545-590 171-210 (220)
12 cd00564 TMP_TenI Thiamine mono 30.1 70 0.0015 29.7 4.2 41 545-591 151-191 (196)
13 PRK00043 thiE thiamine-phospha 26.1 81 0.0018 29.9 4.0 37 545-587 161-197 (212)
14 cd07664 BAR_SNX2 The Bin/Amphi 22.9 3.8E+02 0.0083 26.2 7.9 60 278-338 13-72 (234)
15 PRK10039 hypothetical protein; 21.6 1.5E+02 0.0033 26.0 4.2 51 542-592 68-125 (127)
16 TIGR01163 rpe ribulose-phospha 20.5 1.2E+02 0.0026 28.6 3.9 41 545-591 166-206 (210)
17 cd04726 KGPDC_HPS 3-Keto-L-gul 20.0 1.6E+02 0.0035 27.6 4.7 42 543-590 157-198 (202)
No 1
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-103 Score=816.02 Aligned_cols=576 Identities=43% Similarity=0.702 Sum_probs=519.8
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCCceEEEEcCCCccccccccCchhHHHcCCe-EEEecCCCCC-CCCce
Q 007615 1 MAQIPNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLSAEPVQ-TDCAK 78 (596)
Q Consensus 1 ~~~~~~~~~~~~~l~~lr~~~~~~l~~~l~~~~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~r~~~~-~~~~~ 78 (596)
|+++++-.+...++..+|+.++++|+++|+++||.|.||+|+.++++|+++.+++.|++|||. +..++.++.| .+..+
T Consensus 1 m~~~~~d~~~~~~l~~lq~~a~~eL~~lLds~pG~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~ 80 (600)
T KOG1302|consen 1 MAPHLSDLGADLNLQGLQEVARRELISLLDSLPGKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQ 80 (600)
T ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHhcCCCceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCe
Confidence 667777667789999999999999999999999999999999999999999999999999999 8888876633 34678
Q ss_pred EEEEECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhhccccceeEEEEeceeeecCCCeeEecCcch
Q 007615 79 VVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLA 158 (596)
Q Consensus 79 ~vy~i~p~~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~i~e~~~df~pld~~lfsl~~~~~ 158 (596)
.|||+||+.++++.|++++++.......+.|||+|+|+.+..|+..|+++|+++.+.+.+++++++|+|.|++||+.|++
T Consensus 81 ~vy~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~~P~~~~~c~~~Lee~gv~~~v~~~e~~~~~lpld~DllSlEl~~~ 160 (600)
T KOG1302|consen 81 VVYFVRPRLENMQLIAEHVENVQRDGFTRDYHVIFVPRRSSLCETLLEEEGVYGLVLVEEQILDLLPLDGDLLSLELPNS 160 (600)
T ss_pred EEEEEcCchHHHHHHHHHHhhhhhchhcceeEEEEeccHHHHHHHHHHhcccccccccchhhhhhccccccchhccchHH
Confidence 99999999999999999999876556778999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHcCCCCeEEEeCCchHHHHHHHHHhhhccCCCCCCCCCCCcceEEEEecCCCCcc
Q 007615 159 HKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVT 238 (596)
Q Consensus 159 f~~~~~~~~~~~l~~ia~~L~~l~~~~g~~p~I~~~g~~s~~va~~l~~l~~~~~~~~~~~~~~~~~~LiIlDR~~DliT 238 (596)
|.++|+++|.+.+..+|++|.++|.++|.||.|+..|+.|+++++++.++..+.....++ ..+++++||++||++|++|
T Consensus 161 ~~d~~~~gd~s~l~~va~~l~~LQ~~~G~ip~v~g~G~~ak~~~~l~~~l~~e~~t~n~~-~~~~~~~liLlDR~~D~vt 239 (600)
T KOG1302|consen 161 FLDLYLDGDQSSLYHVADALVSLQRLYGIIPKVYGKGECAKRVWELLKKLEREEATENNG-DRPEIDHLILLDRDVDPVT 239 (600)
T ss_pred HHHHhhccccchhHHHHHHHHHHHHhhCCCcceeeccHHHHHHHHHHHHHhhccccccCC-CccccceEEEEeccCcccc
Confidence 999999999999999999999999999999999999999999999999888765433222 2478889999999999999
Q ss_pred cccchhhhhHHhhhhhcccCCeEEeCcccccccc--CCC----CeeEEecCCCchhHHHhhccCHHHHHHHHHHHHHHHH
Q 007615 239 PMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQ--QDG----KKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMK 312 (596)
Q Consensus 239 Pll~~~TYqali~dl~~I~~~~v~~~~~~~~~~~--~~~----~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~ 312 (596)
||+||+||+||+||+|||++|.|+++++..+.++ +.+ ..+++.++..|++|+++||+||+.|++.+++++++++
T Consensus 240 pLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deIy~eiR~k~f~~v~~~lsk~ak~l~ 319 (600)
T KOG1302|consen 240 PLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEIYAEIRNKHFNAVGPLLSKKAKELQ 319 (600)
T ss_pred hhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886544221 001 2456667778999999999999999999999999999
Q ss_pred HHHHhhcccccCHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 007615 313 QDYTEVTTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIH 388 (596)
Q Consensus 313 ~~~~~~~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~~~~i~~~i~ 388 (596)
.+++.+++. ++++||++||++||++++ ++.|+++|+.+++.+++.+|.+.+++||+++.|.|.++..++|+|+|.
T Consensus 320 ~~~~~r~~~-~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~~~f~~~l~lE~ell~~~d~~k~~~~IeElI~ 398 (600)
T KOG1302|consen 320 AQYETRRQA-MSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKNEDFRKLLKLEHELLEGNDSDKDFDYIEELIY 398 (600)
T ss_pred HHHHhhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCcccchHHHHHHHh
Confidence 999988877 899999999999999976 999999999999999999999999999999999999888999999999
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHhChhHHHHHHHHHhcCCcccccCCc---------chHHHHhhc
Q 007615 389 KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKS---------NWQLVKRAL 459 (596)
Q Consensus 389 ~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~G~~~~~~l~~L~~~gl~~~~~~~~---------~~~~i~k~~ 459 (596)
...+...+|||+||.|++.+|+++++++.++++++|.||++++.+|.||+++|+++.+.... .|+++++.+
T Consensus 399 ~~~~~~~vLRLicL~Slt~~Gl~~k~l~~~rr~~lqsYG~ehl~tl~nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl 478 (600)
T KOG1302|consen 399 QEVPLNNVLRLICLLSLTCNGLKPKDLDHYRREYLQSYGYEHLLTLQNLEKAGLLREQTGGRKLHTKSSKRNYSTWANTL 478 (600)
T ss_pred hcccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccccCCCcchhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998775433 799999999
Q ss_pred ccc-cccCCCCCCCcccccCCccccHHHHHHHHHHc-CCcchHHhhccCCCCccccccCCCCCCCCcccccCCCCCcccC
Q 007615 460 QLV-EDTDTANPNDISYVFSGYAPLSIRLVQNAIRS-GWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKV 537 (596)
Q Consensus 460 ~l~-~~~~~~~~~d~~~~~sgy~Pl~~rlve~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (596)
+++ ++.++.+|+|++|+||||+|+++||+|.+++. +|.+..+....+||+.++..++.+.+..+.+ .
T Consensus 479 ~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~~l~g~~~e~~~~~~~~~~~~~-----------~ 547 (600)
T KOG1302|consen 479 PLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIRNLPGPHFEEVTWTPSDIASKN-----------N 547 (600)
T ss_pred CCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHHHccCCCCchhhcccChhhhcccc-----------c
Confidence 999 77888999999999999999999999999998 7888777888999999876554332211110 0
Q ss_pred CCCCCcEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHh
Q 007615 538 GDGRRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETF 591 (596)
Q Consensus 538 ~~~~~~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l 591 (596)
.++..+.++|||+|||||+||||+|++++.. +++|+|+||.++||.++|+.+
T Consensus 548 ~~g~~R~~lVff~GG~T~~EIAalr~l~~~~--~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 548 SPGALRVTLVFFLGGCTYAEIAALRFLAKLE--GYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred CCCCcceEEEEEECCccHHHHHHHHHHHhhc--CceEEEEeccccchHHHHHhh
Confidence 2346899999999999999999999999997 799999999999999999876
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=1.4e-91 Score=781.17 Aligned_cols=539 Identities=37% Similarity=0.589 Sum_probs=412.9
Q ss_pred ceEEEEcCCCccccccccCchhHHHcCCe-EEEec--CCCCCCCCceEEEEECCChHHHHHHHHHhhccccCCCCceEEE
Q 007615 35 KKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFL 111 (596)
Q Consensus 35 ~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r~~~~~~~~~~vy~i~p~~~~i~~i~~~~~~~~~~~~y~~~~i 111 (596)
||+||+|+.++++||++|++++|+++||+ ++.++ |+|++. .+|||||+|+.+++++|+++++++ +|++|||
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~--~~~iy~i~p~~~~i~~i~~~~~~~----~~~~~~i 74 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPS--MDAIYFIRPTPENIKRIIKDLKNP----PYRSYHI 74 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTT--SEEEEEE-S-HHHHHHHHHHCHST----SBSEEEE
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCC--cceEEEEcCcHHHHHHHHHHHHhc----ccccEEE
Confidence 99999999999999999999999999999 89997 567764 689999999999999999999874 9999999
Q ss_pred EEecCCcHHHHHHHHhhcccccee-EEEEeceeeecCCCeeEecCcchhhhhcc-cCCcchHHHHHHHHHHHHHHcCCCC
Q 007615 112 YFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQV-DGDASSLWHIAKAIHKLEFTFGLIP 189 (596)
Q Consensus 112 ~f~p~~~~~~~~~L~~~~~~~~i~-i~e~~~df~pld~~lfsl~~~~~f~~~~~-~~~~~~l~~ia~~L~~l~~~~g~~p 189 (596)
+|+|+.+..+.+.|++.++.+.|+ +.|+++||+|+|+|+|||++|++|..+|. +++.+.++.+|++|+++|.++|.+|
T Consensus 75 ~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~~~~l~~~a~~L~~l~~~~g~~p 154 (564)
T PF00995_consen 75 FFTPRVSESLLEILAESGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGDESSLQRIADSLLSLQLTLGEIP 154 (564)
T ss_dssp EESS---HHHHHHHHHSCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGHHHHHHHHHHHHHHHHHHTT---
T ss_pred EEehhhhhHHHHhhhhcCccceecccccceeEEEEccchhhhhcccchHHHHhccccchhHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998 99999999999999999999999999999 8899999999999999999999999
Q ss_pred eEEEeCC-chHHHHHHHHHhhhccCCC----CCC---CCCCCcceEEEEecCCCCcccccchhhhhHHhhhhhcccCCeE
Q 007615 190 NVRAKGK-ASVRVAEILNRMQTEEPVS----LSD---MNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSV 261 (596)
Q Consensus 190 ~I~~~g~-~s~~va~~l~~l~~~~~~~----~~~---~~~~~~~~LiIlDR~~DliTPll~~~TYqali~dl~~I~~~~v 261 (596)
.|||+|+ .|++||++|.++.++.... ... ....++++|||+||++|++|||+||||||||+||+|||++|.|
T Consensus 155 ~I~~~g~~~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TYe~li~d~~~i~~~~v 234 (564)
T PF00995_consen 155 NIRYKGNSNAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTYEGLIDDLFGINNNKV 234 (564)
T ss_dssp EEEE-TTCHHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BHHHHHHHHSTEBTTEE
T ss_pred eEEEeCchhHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCceeeeEHHhhhhhcCCEe
Confidence 9999999 9999999998543331100 011 1123457899999999999999999999999999999999999
Q ss_pred EeCccccccccCCCCeeEEecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHH-HhhcccccCHHHHHHHHHhcCCcch
Q 007615 262 ELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDY-TEVTTMSQTVSELKDFVKKLNSLPE 340 (596)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~~~~~~~~~~e~~~~v~~lp~~~~ 340 (596)
+++.+..+++ .++++.||++|++|+++||+||++|++.|.++++++++++ ...++. .++++|+++|+++|++++
T Consensus 235 ~~~~~~~~~~----~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~lp~~~~ 309 (564)
T PF00995_consen 235 EIPDEINSGE----NKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEYEKSRSKS-KSIQEMKEFVKKLPELQE 309 (564)
T ss_dssp EEEECSSSSE----CEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHCH----ST-TTHHCHHHHHCCHHHHHH
T ss_pred ccccCCCccc----cceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhhccccchh-hHHHHHHHHHHHChHHHH
Confidence 9986542211 2479999999999999999999999999999999999876 223333 699999999999999976
Q ss_pred ----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCChhhH-HHHHHHHH-hcCCChHHHHHHHHHHHHhcCCCChhh
Q 007615 341 ----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDIC-FEYIEEMI-HKQEPLNKVLRLLILFSVTNSGLPKKQ 414 (596)
Q Consensus 341 ----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~-~~~i~~~i-~~~~~~~d~lRLl~L~~l~~~g~~~~~ 414 (596)
++.|++||++|++.+++++|.+++++||+|++|.+.++. .+.|+++| ....+..++|||+|||++++ |+++++
T Consensus 310 ~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~~~~~~~~d~LRLl~L~sl~~-g~~~~~ 388 (564)
T PF00995_consen 310 QQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELINSRKISIEDKLRLLCLYSLTN-GIKGKD 388 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHHSTTSTHHHHHHHHHHHHHHH--HTCBH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhhccCCCHHHHHHHHHHHHHHh-cCCcch
Confidence 999999999999999999999999999999999877655 67799999 68899999999999999998 999999
Q ss_pred HHHHHHHHHHH-hChhHHHHHHHHHhcCCcccccCCcchHHHHhhcccc----cccCCCCCCCcccccCCccccHHHHHH
Q 007615 415 FDYLRRELLHS-YGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLV----EDTDTANPNDISYVFSGYAPLSIRLVQ 489 (596)
Q Consensus 415 ~~~l~~~l~~~-~G~~~~~~l~~L~~~gl~~~~~~~~~~~~i~k~~~l~----~~~~~~~~~d~~~~~sgy~Pl~~rlve 489 (596)
++.+++.+.+. ||.+++..+.+|+++|+...+.+...|+.+++.++++ .......+++.+|+|+||+|+++|+|+
T Consensus 389 ~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~y~Pli~rlve 468 (564)
T PF00995_consen 389 YDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNSSNFQSIRKKLNLISKFNDKNDKNNPKDISYVYSGYAPLIVRLVE 468 (564)
T ss_dssp HHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTTS--CTTC-TT---HHTTCCCSSSSCSCCCSTTCT---HHHHHHH
T ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCccchhhhcccccccccccccccccccccccchhcccccHHHHHHH
Confidence 99999999999 9999999999999999987653101577777777765 123345678999999999999999999
Q ss_pred HHHHcCCcchHHhhccCCCCccccccCCCCCCCCcccccCCCCCcccCCCCCCcEEEEEEEcCcCHHHHHHHHHHHHhcC
Q 007615 490 NAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKVGDGRRSLVLVVFVGGVTFAEISALRFLSAQEG 569 (596)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVfviGGvTy~Ei~~l~~l~~~~~ 569 (596)
.++++.|+..+.++ .+....-.... .. .+.+.....+... .....+.+++||||||||||+|++++|+++++.+
T Consensus 469 ~~~~~~l~~~~~~~-~~~~~~~~~~~--~~--~~~~~~~~~~~~~-~~~~~~~~~viVf~vGGvTy~Ei~~l~~l~~~~~ 542 (564)
T PF00995_consen 469 DLIKGKLDKEEEFP-YLDPKPKNLNG--SS--FSLRSSKPSRSKT-QPSNKPRKRVIVFFVGGVTYSEIRALRELSKKLG 542 (564)
T ss_dssp HHHTTHSHHTTTSE-BSSTCC-------SS--SSSS--------------S-SSEEEEEEETEBEHHHHHHHHHHHTTSS
T ss_pred HHhhccCCcccccc-cccccccccCC--CC--ccccccccccccc-ccccCCCCEEEEEEEcCCcHHHHHHHHHHHHhhC
Confidence 99986553111111 11111000000 00 0000000000000 1124567889999999999999999999999973
Q ss_pred CCceEEEEecCCccchhHHHHh
Q 007615 570 MAYDVIVGTTKIISGNSLAETF 591 (596)
Q Consensus 570 ~~~~iiigsT~ii~~~~fi~~l 591 (596)
.+++|+||||+|+||++|+++|
T Consensus 543 ~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 543 PGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp SSSEEEEEESSBE-HHHHHHHH
T ss_pred CCcEEEEEeCCccCHHHHHHhC
Confidence 3499999999999999999986
No 3
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-82 Score=657.74 Aligned_cols=548 Identities=20% Similarity=0.312 Sum_probs=427.4
Q ss_pred HHHHHHHHHHH-HHhhcC--CCceEEEEcCCCccccccccCchhHHHcCCe-EEEec--CCCCCCCCceEEEEECCChHH
Q 007615 16 SIREQSQRDLV-NILKNI--RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFIS 89 (596)
Q Consensus 16 ~lr~~~~~~l~-~~l~~~--~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r~~~~~~~~~~vy~i~p~~~~ 89 (596)
+|++..++.++ .+++.- ..|||||+|+.+++++|+||+|+++++.||+ ++.++ |+|+++ +.||||++|+.++
T Consensus 2 ~l~~l~~~kil~~v~~~~k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~S--meaIY~i~pt~~~ 79 (593)
T KOG1300|consen 2 GLKELVKKKILEDVLRVEKKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPS--MEAIYFITPTEES 79 (593)
T ss_pred chHHHHHHHHHHHhcccCCCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCc--ceeEEEecCchhh
Confidence 36777777777 666622 2499999999999999999999999999999 89886 789875 8999999999999
Q ss_pred HHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhhcccccee-EEEEeceeeecCCCeeEecCcchhhhhcccCC-
Q 007615 90 MRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVDGD- 167 (596)
Q Consensus 90 i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-i~e~~~df~pld~~lfsl~~~~~f~~~~~~~~- 167 (596)
++.++.|+.. ..+.|+.+||||++-++....+.|...-+...|. +.+++++|+|+|+++|+++.|++|..+|.+.+
T Consensus 80 V~~~i~Df~~--~~~~Y~~ahifF~~~c~~~lf~~l~ks~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~~a 157 (593)
T KOG1300|consen 80 VDCLIKDFEG--RSPLYKAAHIFFLDPCPDPLFNKLSKSRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPDNA 157 (593)
T ss_pred HHHHHHhhcc--cCcccceEEEEEcCCCCHHHHHHHHhhhHhhhhhhheecccccceecceeeeecChhhHHHhcCchhh
Confidence 9999999962 2469999999999988887888887766777775 99999999999999999999999999998663
Q ss_pred ---cchHHHHHHHHHHHHHHcCCCCeEEEeCCc---h----HHHHHHHH-HhhhccCCCCCCCCCCCcceEEEEecCCCC
Q 007615 168 ---ASSLWHIAKAIHKLEFTFGLIPNVRAKGKA---S----VRVAEILN-RMQTEEPVSLSDMNIPEINTLVLIDREVDM 236 (596)
Q Consensus 168 ---~~~l~~ia~~L~~l~~~~g~~p~I~~~g~~---s----~~va~~l~-~l~~~~~~~~~~~~~~~~~~LiIlDR~~Dl 236 (596)
...+..+|.++.++|.++|++|+|||.|.. | ..||..+. .+..+.. +....+...++.|||+||++|+
T Consensus 158 ~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as~l~~~va~~l~~~~~~~~~-~~~~~p~~~~seLlIlDRs~D~ 236 (593)
T KOG1300|consen 158 AIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNASELAQKVAAKLWDAYKAYKP-SIGNGPQKTRSELLILDRSFDP 236 (593)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHHHHHHHHHHHHHHHHHhccc-ccCCCCCcccceEEEEeccccc
Confidence 457899999999999999999999999853 2 34444444 3333331 1112223467899999999999
Q ss_pred cccccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCeeEEecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHH
Q 007615 237 VTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYT 316 (596)
Q Consensus 237 iTPll~~~TYqali~dl~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~ 316 (596)
++|++|+||||||+||+++|++|.|.+.....+ .++++++.|+++|++|-++||+||++|.+.|++.+++|.+..+
T Consensus 237 iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~----g~~kk~vllde~D~~WveLRH~HIadvse~l~~~~k~f~~~nk 312 (593)
T KOG1300|consen 237 VAPLLHEFTYQAMAYDLLPIENDVYRYETPGKS----GEKKKEVLLDEDDDLWVELRHKHIADVSERLTKKMKNFSSKNK 312 (593)
T ss_pred cchHHHHHHHHHHHHHHHhhcCCEEEEecCCCC----CCccceeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999654322 2247889999999999999999999999999999999988764
Q ss_pred hhccc--ccCHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCChh-----hHHHHHHH
Q 007615 317 EVTTM--SQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEYIEE 385 (596)
Q Consensus 317 ~~~~~--~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~i~~ 385 (596)
..... ..++++|.++|++||+|++ ++.|++||++|++.++. .+.+++.+||+++.|.|.. ..+..+..
T Consensus 313 ~~~~~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p 391 (593)
T KOG1300|consen 313 RLQTKSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGEKIKDSLRDLLP 391 (593)
T ss_pred hhhccccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHHhhhh
Confidence 32211 2589999999999999987 99999999999999998 9999999999999996643 23444444
Q ss_pred HH-hcCCChHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHhC--hhHHHHHHHHHhcCCcccccCCcchHHHHhhcccc
Q 007615 386 MI-HKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYG--FEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLV 462 (596)
Q Consensus 386 ~i-~~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~G--~~~~~~l~~L~~~gl~~~~~~~~~~~~i~k~~~l~ 462 (596)
.+ .......+++|++++|.+..+|+...++.++ ++.-| .++...+.|+...|.-...+.. . ++....
T Consensus 392 ~l~~~~~~~~dklR~Illy~~~~~Gi~ee~l~kL----~~~~~i~~~~~~ii~~~~~~~~~~~~~~~---~-~k~~~~-- 461 (593)
T KOG1300|consen 392 ILLESNVRLLDKLRLILLYIFERKGIIEENLAKL----LQHAGISVEEMQIIQNLHILGVPVTKDSF---L-LKFDPP-- 461 (593)
T ss_pred hhcccCchHHHHHHHHHHHHHhcCCccHHHHHHH----hcccCCCchHHHHHhhHHHhCCccccCcc---c-ccCCCC--
Confidence 33 3567889999999999999999998877666 45544 4578899999999875443321 1 000000
Q ss_pred cccCCCCCCCcccccCCccccHHHHHHHHHHcCCcchHHhhccCCCCccccccCCCCCCCCcccccCCCCCcccCCCCCC
Q 007615 463 EDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKVGDGRR 542 (596)
Q Consensus 463 ~~~~~~~~~d~~~~~sgy~Pl~~rlve~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (596)
+ ....+.+..|..|||+|.++.++|+++++.++. + .++.+.+++ ..+......|+|..+..+...+......+
T Consensus 462 ~--rker~~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~-~-~fp~~~~~s---~~~~~~~~~Sar~~~~~~~k~~~~~~~~g 534 (593)
T KOG1300|consen 462 E--RKERVEEQTYQLSRWVPVIKNILEKLIEDRLDK-K-HFPYLNDTS---ETSSGSAATSARYGHPLSNKTPSAFKKPG 534 (593)
T ss_pred c--cccccccceeeeeeeehHHHHHHHHHHhccCCh-h-hCccccCCc---cccccCccccccccCcccccCcchhhccC
Confidence 0 012335678999999999999999999976654 1 223333322 01111112233321111101110124578
Q ss_pred cEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHhh
Q 007615 543 SLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFS 592 (596)
Q Consensus 543 ~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l~ 592 (596)
+++||||+||+||+|+|++|++++++ +++|+||||+|++|.+|+..|.
T Consensus 535 ~ri~VfIiGGvT~SEmRvaYevs~~~--~~EViiGS~~iltP~~fL~~lk 582 (593)
T KOG1300|consen 535 QRIIVFIIGGVTFSEMRVAYEVSEKL--NREVIIGSDHILTPTKFLDDLK 582 (593)
T ss_pred ceEEEEEeCCccHHHHHHHHHHHHhh--CceEEECCcccCCHHHHHHHHh
Confidence 99999999999999999999999997 7999999999999999999886
No 4
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-79 Score=649.67 Aligned_cols=550 Identities=23% Similarity=0.366 Sum_probs=439.3
Q ss_pred HHHHHHHHHHHHHhhcCCC---ceEEEEcCCCccccccccCchhHHHcCCe-EEEec--CCCCCCCCceEEEEECCChHH
Q 007615 16 SIREQSQRDLVNILKNIRG---KKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFIS 89 (596)
Q Consensus 16 ~lr~~~~~~l~~~l~~~~g---~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r~~~~~~~~~~vy~i~p~~~~ 89 (596)
.+++.++++|...+..+.+ ||||++|+.+..+||+++.+++|++|||+ ++.++ |+|... ..|||||+||.++
T Consensus 3 dl~e~q~~~i~~~i~~v~~~n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~--~~aiy~v~pt~e~ 80 (582)
T COG5158 3 DLLELQKNKILDEIFLVQPANIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISD--LPAIYFVRPTKEN 80 (582)
T ss_pred cHHHHHHHHHHHHHHhcCCCcceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCC--CCEEEEEcCchHH
Confidence 4889999999998888753 99999999999999999999999999999 78886 667653 6899999999999
Q ss_pred HHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhhcccccee-EEEEeceeeecCCCeeEecCcchhhhhcccCCc
Q 007615 90 MRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDA 168 (596)
Q Consensus 90 i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-i~e~~~df~pld~~lfsl~~~~~f~~~~~~~~~ 168 (596)
++.|++|+++. .+.|..||+.|+|..+....+.|++.++...|. |.++++||+++|+++|++++|..|...+.++..
T Consensus 81 i~~i~~D~~~~--~~~Y~~~~~~f~~~~~~~l~e~l~es~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~~~~~ 158 (582)
T COG5158 81 IDLILEDLEQW--DPFYLNYHISFLNTVTESLLELLAESGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESSLPSTT 158 (582)
T ss_pred HHHHHHHHhcc--CccccceeEEecccchHHHHHHHhhcCchhheeeeeeeecceEEechHhHhhcCchhhhhhcCCCch
Confidence 99999999984 358999999999999999999999999998887 999999999999999999999999988877766
Q ss_pred chHHHHHHHHHHHHHHcCCCCeEEEeC-CchHHHHHHHH-HhhhccCCCCC--CCCCCCcceEEEEecCCCCcccccchh
Q 007615 169 SSLWHIAKAIHKLEFTFGLIPNVRAKG-KASVRVAEILN-RMQTEEPVSLS--DMNIPEINTLVLIDREVDMVTPMCSQL 244 (596)
Q Consensus 169 ~~l~~ia~~L~~l~~~~g~~p~I~~~g-~~s~~va~~l~-~l~~~~~~~~~--~~~~~~~~~LiIlDR~~DliTPll~~~ 244 (596)
..+-.++.+|+++|.++|.+|.|||.| ..|.++|+++. .++++...... -...+.+++|||+||+.|++|||+|+|
T Consensus 159 ~~~~~~v~gl~S~~~slg~~P~Ir~~~~~~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~~~LIIlDRs~D~iTPlLh~w 238 (582)
T COG5158 159 EALIKIVNGLFSLCVSLGRIPIIRYSGGKNAEHMAKKLSDEIRNELSINFDGVVSKNPLRPILIILDRSLDPITPLLHQW 238 (582)
T ss_pred HHHHHHHhhHHHHHhhcCCcceEEecCCchHHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCcccchHHHH
Confidence 666689999999999999999999976 88999999987 55543321111 112346899999999999999999999
Q ss_pred hhhHHhhhhhcccCCeEEeCccccccccCCCCeeEEe-cCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhccc-c
Q 007615 245 TYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVP-LNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTM-S 322 (596)
Q Consensus 245 TYqali~dl~~I~~~~v~~~~~~~~~~~~~~~~~~~~-L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~-~ 322 (596)
|||||+||++++++|.|+++.... .|..+++. ++.+|++|+++||+||++|++.|++.+++++.+++.+... .
T Consensus 239 TYqaml~Dl~~~~~~~v~~~~~~~-----~g~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~~~~~l~~~~~~~~~~~~ 313 (582)
T COG5158 239 TYQAMLHDLLGINNNIVTIPSSSV-----NGPEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKKLAKELKTKAQLRHKENA 313 (582)
T ss_pred HHHHHHHHHHHhhcCeEEeccccc-----ccccceeccCCcccHhHHHhccCchhhHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 999999999999999999975432 23334444 4458999999999999999999999999999999877633 2
Q ss_pred cCHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCChHHHHH
Q 007615 323 QTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLR 398 (596)
Q Consensus 323 ~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~~~~i~~~i~~~~~~~d~lR 398 (596)
.++.+|++||.+||++++ +..|++||++|++.++++.|+++.++||++.++.+.+..+..+......+....+|||
T Consensus 314 ~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~~~~~i~Dli~~l~~~~~E~~klR 393 (582)
T COG5158 314 KSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGNDVKSDISDLIELLESGVEEDDKLR 393 (582)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhcCchHHHHHH
Confidence 699999999999999987 9999999999999999999999999999999987643333222222333333335999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHhChhHHHHHHHHHhcCCcccccCC------cchHHHHhhccccccc-CCCCCC
Q 007615 399 LLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETK------SNWQLVKRALQLVEDT-DTANPN 471 (596)
Q Consensus 399 Ll~L~~l~~~g~~~~~~~~l~~~l~~~~G~~~~~~l~~L~~~gl~~~~~~~------~~~~~i~k~~~l~~~~-~~~~~~ 471 (596)
|+|||+++.+|+ .++++.++....+.+|.+++..+.+|+.+|.+..++.. +.-..+-+.++.++.. ......
T Consensus 394 llilysL~~~~~-~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~g~~d~l~~~~n~y~~s~~~~~~~ 472 (582)
T COG5158 394 LLILYSLTKDGL-IKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISLKRGDKDSLFQWFNTYSLSREHQGVP 472 (582)
T ss_pred HHHHHHHhcCcc-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhcccccccccCCcccccCcccccccccccCCCc
Confidence 999999999997 66777777777788999999999999999987543311 0001122233334211 114566
Q ss_pred CcccccCCccccHHHHHHHHHHcCCcchHHhhccCCCCccccccCCCCCCCCcccc-cCCCCCcccCCCCCCcEEEEEEE
Q 007615 472 DISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMS-QGLSSSIDKVGDGRRSLVLVVFV 550 (596)
Q Consensus 472 d~~~~~sgy~Pl~~rlve~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~viVfvi 550 (596)
+..++|.||.|..+++...++.+.... +.....+. |.+.. +++.++.. ...++++++|||+
T Consensus 473 ~~~~v~~~~iP~~k~~~~~~~~~~~~~----------~~~s~~~~------s~~~~~~k~~~~~~--~~~~~~~~~Vfvi 534 (582)
T COG5158 473 DLENVYSGLIPLKKDIPIDLLVRRLFE----------PLKSSQQQ------SLRLSRPKGRSRSN--KKIPQQRILVFVI 534 (582)
T ss_pred hHHHHHHhhcchhcccchhhhhhhhcc----------cccchhcc------ceeecccccccccc--cccccceEEEEEE
Confidence 788999999999999999888753221 00000000 11100 00011111 2467899999999
Q ss_pred cCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHhhhh
Q 007615 551 GGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSEN 594 (596)
Q Consensus 551 GGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l~~~ 594 (596)
||+||.|++++++++.+.+ +++|++|||.|++|.+||+++...
T Consensus 535 GG~ty~E~~~~~e~~~~~~-~~~ii~Gst~iltp~e~l~~v~~~ 577 (582)
T COG5158 535 GGVTYEELRVLYELNESQN-SVRIIYGSTEILTPAEFLDEVKRL 577 (582)
T ss_pred CCeehHHHHHHHHHHhhcC-CeeEEEcCCceecHHHHHHHHHHh
Confidence 9999999999999999862 399999999999999999998754
No 5
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-78 Score=599.61 Aligned_cols=522 Identities=21% Similarity=0.323 Sum_probs=435.9
Q ss_pred HHHHHHHHHHHhhcC-CCceEEEEcCCCccccccccCchhHHHcCCe-EEEec---CCCCCCCCceEEEEECCChHHHHH
Q 007615 18 REQSQRDLVNILKNI-RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS---AEPVQTDCAKVVYFVGPQFISMRF 92 (596)
Q Consensus 18 r~~~~~~l~~~l~~~-~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~---r~~~~~~~~~~vy~i~p~~~~i~~ 92 (596)
-...+.++-.|+... ||.|||++|+.|..++|.+++.|+++++.|- ++.|+ |+.+. +..||+|||||++|+++
T Consensus 4 v~~~k~yi~~m~~~~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~k--hLkcvvfiRPT~eniq~ 81 (549)
T KOG1299|consen 4 VSSSKKYIEKMIQESGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIK--HLKCVVFIRPTPENIQL 81 (549)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhh--CceEEEEeccChHHHHH
Confidence 346777888888665 5999999999999999999999999999997 66665 45664 58999999999999999
Q ss_pred HHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhhcccccee-EEEEeceeeecCCCeeEecCcchhhhhcccCCcchH
Q 007615 93 ISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSL 171 (596)
Q Consensus 93 i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-i~e~~~df~pld~~lfsl~~~~~f~~~~~~~~~~~l 171 (596)
++++++++ .|..|||||++.++....+.|++++....|+ |.|+++||+++++++|||+.|++|... ..++...+
T Consensus 82 L~~ELrnP----ry~~Y~lyFsN~i~ks~le~LAesD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~-~~w~~~~l 156 (549)
T KOG1299|consen 82 LIEELRNP----RYGEYHLYFSNIISKSDLERLAESDEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESS-LNWDPGAL 156 (549)
T ss_pred HHHHhcCC----cceeEEEEEeccCCHHHHHHHHhcchHHHHHHHHHHHHhhhccCCceeecCCchhhccc-cccChhhh
Confidence 99999986 9999999999999999999999999999998 999999999999999999999999876 57788899
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEeC--CchHHHHHHHH-HhhhccCCCCCCCCC-CCcceEEEEecCCCCcccccchhhhh
Q 007615 172 WHIAKAIHKLEFTFGLIPNVRAKG--KASVRVAEILN-RMQTEEPVSLSDMNI-PEINTLVLIDREVDMVTPMCSQLTYE 247 (596)
Q Consensus 172 ~~ia~~L~~l~~~~g~~p~I~~~g--~~s~~va~~l~-~l~~~~~~~~~~~~~-~~~~~LiIlDR~~DliTPll~~~TYq 247 (596)
.++.++|.++...++..|.|||++ ..|+++|+.+. .+..+. ..++... ...++|+|+||+.|++||||+|||||
T Consensus 157 ~R~~~GI~AllLsLK~~P~IRYq~~S~~~~~lAe~vs~~i~~E~--~lFdfr~~~~~p~LLiLDR~~DpvTPLL~qWTYQ 234 (549)
T KOG1299|consen 157 TRSTQGIIALLLSLKKKPVIRYQTSSRACKRLAEEVSYRITKES--TLFDFRRTDSPPLLLILDRRDDPVTPLLNQWTYQ 234 (549)
T ss_pred hHhHhhHHHHHHhccCCCeeEeecCCHHHHHHHHHHHHHHhhhh--hhcccccCCCCCeEEEEecCCCCCchhhhHHHHH
Confidence 999999999999999999999987 47899999988 555532 2333222 34579999999999999999999999
Q ss_pred HHhhhhhcccCCeEEeCccccccccCCCCeeEEecCC-CchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhcccccCHH
Q 007615 248 GLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNS-SDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVS 326 (596)
Q Consensus 248 ali~dl~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~-~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (596)
||+||++||++|+|++.....- ..+.++++|++ +|+||+..++.+|+|+++.|+..+++++.+.+..++. +++.
T Consensus 235 aMvHEl~gi~nnrvdls~~~~~----~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~fq~k~~~~~~i-esi~ 309 (549)
T KOG1299|consen 235 AMVHELLGIKNNRVDLSKVPSI----PKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSEFQFKTKTNSNI-ESIA 309 (549)
T ss_pred HHHHHHhccccCEEeeccCCCC----ccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhchhh-hhHH
Confidence 9999999999999999753211 12347888987 7999999999999999999999999999876666666 7999
Q ss_pred HHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCChhhHHHHHHHHHh-cCCChHHHHHHHH
Q 007615 327 ELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIH-KQEPLNKVLRLLI 401 (596)
Q Consensus 327 e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~~~~i~~~i~-~~~~~~d~lRLl~ 401 (596)
+|+.|+...|++++ ++.|+.+..++++.++.+++.+++++||++++..+....++.|.+++. .+.+..|++||+|
T Consensus 310 Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~~~i~~LL~n~~vs~~d~lrLv~ 389 (549)
T KOG1299|consen 310 DMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGADFNDIKKLLQNEKVSEIDRLRLVA 389 (549)
T ss_pred HHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999999987 999999999999999999999999999999998887788999999998 5589999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHhC--hhHHHHHHHHHhcCCcccccCC----cchHHHHhhcccccccCCCCCCCccc
Q 007615 402 LFSVTNSGLPKKQFDYLRRELLHSYG--FEHMATLNNLEKAGLFKKQETK----SNWQLVKRALQLVEDTDTANPNDISY 475 (596)
Q Consensus 402 L~~l~~~g~~~~~~~~l~~~l~~~~G--~~~~~~l~~L~~~gl~~~~~~~----~~~~~i~k~~~l~~~~~~~~~~d~~~ 475 (596)
||+|.+...++.++..+-..+.+.-+ .+.+.++ ++.+|+..++++- ..++-.|+..+- .++...
T Consensus 390 lYaLr~e~~~~~~~~~L~~~l~~~~~~~~~~v~~l--l~~~G~~~R~~dlf~~~~~v~i~R~~~kg--------lkgvEN 459 (549)
T KOG1299|consen 390 LYALRYERHPPNELRQLPQILREQGPKKPELVPFL--LKYAGLHVRQGDLFGPNDLVPIARRFIKG--------LKGVEN 459 (549)
T ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCcchhHHHH--HHhcCcccccccccCcchhHHHHHHHhhc--------cCcchh
Confidence 99999999988888888665444333 1223332 4567877655431 123323332222 244667
Q ss_pred ccCCccccHHHHHHHHHHcCCcchHHhhccCCCCccccccCCCCCCCCcccccCCCCCcccCCCCCCcEEEEEEEcCcCH
Q 007615 476 VFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKVGDGRRSLVLVVFVGGVTF 555 (596)
Q Consensus 476 ~~sgy~Pl~~rlve~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVfviGGvTy 555 (596)
+|.+|.|++++++++++.+.+..+.. +.+. ++....+++.||||++||+||
T Consensus 460 VytQH~P~lk~~l~~~~rgRl~~~~~--p~l~---------------------------~~~s~~~pq~IIVfivGGaTY 510 (549)
T KOG1299|consen 460 VYTQHQPLLKSTLEDLFRGRLKEIDY--PFLG---------------------------SQTSRDRPQDIIVFIVGGATY 510 (549)
T ss_pred hhhccCHHHHHHHHHHHhcccccCCC--cccc---------------------------cccccCCCceEEEEEECCccH
Confidence 99999999999999999987654321 1110 001357899999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHhhh
Q 007615 556 AEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 593 (596)
Q Consensus 556 ~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l~~ 593 (596)
+|.+.++++... ++|.+++.|+|.|+|.+.|++++..
T Consensus 511 EEa~~V~~~N~t-n~g~rvvLgGttvlntk~f~~di~~ 547 (549)
T KOG1299|consen 511 EEARVVHELNAT-NPGVRVVLGGTTVLNTKSFIDEIMA 547 (549)
T ss_pred HHHHHHHHHhcC-CCceEEEEcceEEechHHHHHHHhc
Confidence 999999999876 5699999999999999999999864
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-76 Score=592.28 Aligned_cols=544 Identities=21% Similarity=0.292 Sum_probs=402.7
Q ss_pred ChHHHHHHHHHHHHHHhhc-----------CCCceEEEEcCCCccccccccCchhHHHcCCeE-EEe--cCCCCCCCCce
Q 007615 13 NLKSIREQSQRDLVNILKN-----------IRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIEL-RLL--SAEPVQTDCAK 78 (596)
Q Consensus 13 ~l~~lr~~~~~~l~~~l~~-----------~~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~i-~~l--~r~~~~~~~~~ 78 (596)
-..+||+.+-..+..||.- -|-|||||+|..+..+||+++++++|++||||+ ..+ +|+|+++ .+
T Consensus 8 ~~~slRe~Qi~al~~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~D--VP 85 (621)
T KOG1301|consen 8 AAASLRERQIVALKKMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPD--VP 85 (621)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCC--CC
Confidence 4678999999999999841 146999999999999999999999999999995 455 4899985 46
Q ss_pred EEEEECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhh----cccccee-EEEEeceeeecCCCeeEe
Q 007615 79 VVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEE----KVHNLMT-IGEYPLYMVPLDEDVLSF 153 (596)
Q Consensus 79 ~vy~i~p~~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~----~~~~~i~-i~e~~~df~pld~~lfsl 153 (596)
|||||.||.||+++|++|++.. +|.+||++|+..++....+-|++. |....|. |++.+++|+.+|+|+|+|
T Consensus 86 AVYFV~Pt~eNid~i~~Dl~~~----lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL 161 (621)
T KOG1301|consen 86 AVYFVSPTEENIDRIIQDLSKG----LYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSL 161 (621)
T ss_pred eEEEeCCchHhHHHHHHHHHHh----hhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhh
Confidence 9999999999999999999875 999999999976665555545443 4556676 999999999999999999
Q ss_pred cCcchhhhhcccCC-----cchHHHHHHHHHHHHHHcCCCCeEEE-eCCchHHHHHHHH-HhhhccC---CCCCCCC---
Q 007615 154 ELDLAHKEWQVDGD-----ASSLWHIAKAIHKLEFTFGLIPNVRA-KGKASVRVAEILN-RMQTEEP---VSLSDMN--- 220 (596)
Q Consensus 154 ~~~~~f~~~~~~~~-----~~~l~~ia~~L~~l~~~~g~~p~I~~-~g~~s~~va~~l~-~l~~~~~---~~~~~~~--- 220 (596)
.++++|..+..++. ...+..+|.+|++++.++|.+|+||| +|+.|++||++|. +++...- .+.+...
T Consensus 162 ~~~~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~aAEmvA~kL~qKLRd~l~d~k~~lft~~~~~ 241 (621)
T KOG1301|consen 162 GMQNSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGGAAEMVARKLDQKLRDNLRDTKNNLFTMDGGG 241 (621)
T ss_pred cccccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCCHHHHHHHHHHHHHHHHhHhhcccceeccCcc
Confidence 99999966554332 24678899999999999999999999 7999999999998 6666432 1222111
Q ss_pred -CCCcceEEEEecCCCCcccccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCeeEEecCCCchhHHHhhccCHHH
Q 007615 221 -IPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEV 299 (596)
Q Consensus 221 -~~~~~~LiIlDR~~DliTPll~~~TYqali~dl~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~ 299 (596)
..++|.|+|+||++|++||+.|.||||||+||+|+++.|+|+++... +.++++.++|+.+|.||+.+++..|++
T Consensus 242 ~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~-----~~~~~k~yDld~~D~fW~~n~~~pFP~ 316 (621)
T KOG1301|consen 242 AGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESES-----KRKKKKSYDLDPNDKFWRRNKGSPFPE 316 (621)
T ss_pred cCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccc-----cCCCCccccCCCccHHHHhcCCCCCch
Confidence 24899999999999999999999999999999999999999998643 135688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-------------ccCHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhh
Q 007615 300 VVQVLRQKATSMKQDYTEVTTM-------------SQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLG 362 (596)
Q Consensus 300 v~~~l~~~~~~~~~~~~~~~~~-------------~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~ 362 (596)
|++.+.+++.+++++..+.+.. ..+...+++.|++||++.+ +++|+|||.++++.++.|+++.
T Consensus 317 VAE~Ve~eL~~Yk~~~~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~IkeR~lD~ 396 (621)
T KOG1301|consen 317 VAENVEEELESYKNEEAEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIKERKLDD 396 (621)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999988776521 1244499999999999975 9999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh-cCCChHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHhC--hhHHHHHHHHHh
Q 007615 363 QLDMEHTIIEAQSYDICFEYIEEMIH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYG--FEHMATLNNLEK 439 (596)
Q Consensus 363 ~~~lEq~i~~~~~~~~~~~~i~~~i~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~G--~~~~~~l~~L~~ 439 (596)
+++.|++++++.-.+..+ .-+.+ ...+.+||||++++|.++...+++.++++++..+ ...| ...+..+.+++.
T Consensus 397 ff~~E~~~~~~~l~~~~l---~~~~~~~~gt~EDkLR~~Ii~~ls~et~~~s~le~~e~al-~e~~~d~~Al~yvkr~k~ 472 (621)
T KOG1301|consen 397 FFEVEKKIMSTTLDRSLL---DILEDGEAGTPEDKLRLFIIYYLSTETVPQSDLEAVENAL-TEAGCDLNALKYVKRLKE 472 (621)
T ss_pred HHHHhcccccccccHHHH---HHHhcccCCChHHHHHHHHHHHHhhccccHHHHHHHHHHH-HhcCCchHHHHHHHHHHH
Confidence 999999998732222222 22233 4578999999999999999999999999987764 3333 333444444333
Q ss_pred cCCccccc------CCcchHHHHhhcccc-cccCCCCCCCccc-ccCCccccHHHHHHHHHHcCC-cchHHhhccCCCCc
Q 007615 440 AGLFKKQE------TKSNWQLVKRALQLV-EDTDTANPNDISY-VFSGYAPLSIRLVQNAIRSGW-RPMEEILKLLPGPH 510 (596)
Q Consensus 440 ~gl~~~~~------~~~~~~~i~k~~~l~-~~~~~~~~~d~~~-~~sgy~Pl~~rlve~~~~~~~-~~~~~~~~~l~~~~ 510 (596)
..-..+.. ..+......+.+..- ..+- ..+.. +-.+-.=.++++||.+..+.- +.+++++- +.
T Consensus 473 ~~~~~s~~~~~~~~~t~~~~~~~kl~~qg~~~vm----~GVKNLlp~~q~lPvT~iveal~~~~sn~etddYl~-~D--- 544 (621)
T KOG1301|consen 473 ITKMSSATSAYSGTTTKIVDLFEKLYSQGSSFVM----EGVKNLLPKKQNLPVTRIVEALMDPKSNPETDDYLY-FD--- 544 (621)
T ss_pred HhhcccccccccCCcccHHHHHHHHhhccHHHHH----hhHHhcCcccccCcHHHHHHHhhCCCCCccccceEe-ec---
Confidence 22111100 001111111111100 0000 00000 000111124555555554322 12222110 00
Q ss_pred cccccCCCCCCCCcccccCCCCCcccCCCCCCcEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHH
Q 007615 511 YETKRGGFSSSPSFDMSQGLSSSIDKVGDGRRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET 590 (596)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~ 590 (596)
++..+++.+.... .+++.+..|||||||++|-|+..|.+++++-...++||||||+|+||.+|++|
T Consensus 545 -------------Pk~~k~~~~~~~~-~r~~f~eaIVFvVGGGNYiEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~q 610 (621)
T KOG1301|consen 545 -------------PKLSKGGSSSLPI-KRQPFQEAIVFVVGGGNYIEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQ 610 (621)
T ss_pred -------------cccccCCCccccc-cccchhheEEEEEcCcCeeehhhHHHHHHhhcccceeEecchhcCCHHHHHHH
Confidence 0001111111111 36778999999999999999999999998854458999999999999999999
Q ss_pred hhh
Q 007615 591 FSE 593 (596)
Q Consensus 591 l~~ 593 (596)
+..
T Consensus 611 ls~ 613 (621)
T KOG1301|consen 611 LSR 613 (621)
T ss_pred HHH
Confidence 984
No 7
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=44.46 E-value=60 Score=26.88 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=28.5
Q ss_pred CCCcEEEEEEEcC--cCHHHHHHHH-HHHHhcCCCceEEEEec
Q 007615 540 GRRSLVLVVFVGG--VTFAEISALR-FLSAQEGMAYDVIVGTT 579 (596)
Q Consensus 540 ~~~~~viVfviGG--vTy~Ei~~l~-~l~~~~~~~~~iiigsT 579 (596)
..-+.++|-|.|| +|+.|+..+- .+.+....+.+|++|.+
T Consensus 34 ~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 34 KGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp GG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 3468899999997 7899998875 44455555789999876
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.63 E-value=56 Score=31.71 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=28.9
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHH
Q 007615 544 LVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAE 589 (596)
Q Consensus 544 ~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~ 589 (596)
.+.|.+.||+|-..+..+. +. |.++++.++.|.+.+++-+
T Consensus 167 ~~~I~vdGGI~~eni~~l~---~a---GAd~vVvGSaIf~~~d~~~ 206 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIA---EA---GADMFVAGSAIFGQPDYKA 206 (220)
T ss_pred CeeEEEECCCCHHHHHHHH---Hc---CCCEEEEeHHHhCCCCHHH
Confidence 4778889999966555444 33 7888888999987655433
No 9
>PF14071 YlbD_coat: Putative coat protein
Probab=34.61 E-value=26 Score=30.44 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=12.5
Q ss_pred EecCCCchhHHHhh
Q 007615 280 VPLNSSDKLFKEIR 293 (596)
Q Consensus 280 ~~L~~~D~~~~~~r 293 (596)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 56888999999999
No 10
>PLN02334 ribulose-phosphate 3-epimerase
Probab=34.33 E-value=46 Score=32.41 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=28.7
Q ss_pred EEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHH
Q 007615 546 LVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAE 589 (596)
Q Consensus 546 iVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~ 589 (596)
-|+++||+|-.-++.+... |.++++.++.|.+.++.-+
T Consensus 176 ~I~a~GGI~~e~i~~l~~a------Gad~vvvgsai~~~~d~~~ 213 (229)
T PLN02334 176 DIEVDGGVGPSTIDKAAEA------GANVIVAGSAVFGAPDYAE 213 (229)
T ss_pred cEEEeCCCCHHHHHHHHHc------CCCEEEEChHHhCCCCHHH
Confidence 5899999998866665543 7788888888987666433
No 11
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=33.88 E-value=56 Score=31.35 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=29.9
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHH
Q 007615 545 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET 590 (596)
Q Consensus 545 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~ 590 (596)
..|.+.||+|-..++.+.. . +.+.++.++.|++.++.-+.
T Consensus 171 ~~i~v~GGI~~~nv~~l~~---~---GaD~vvvgSai~~~~d~~~~ 210 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE---A---GADVFVAGSAVFGAPDYKEA 210 (220)
T ss_pred ceEEEECCCCHHHHHHHHH---c---CCCEEEEChhhhCCCCHHHH
Confidence 5677889999966655544 2 78999999999976665443
No 12
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=30.13 E-value=70 Score=29.71 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=28.5
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHh
Q 007615 545 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETF 591 (596)
Q Consensus 545 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l 591 (596)
+-|++.||+|-..+..+.. . |.+.+..++.+...++..+.+
T Consensus 151 ~pv~a~GGi~~~~i~~~~~---~---Ga~~i~~g~~i~~~~~~~~~~ 191 (196)
T cd00564 151 IPVVAIGGITPENAAEVLA---A---GADGVAVISAITGADDPAAAA 191 (196)
T ss_pred CCEEEECCCCHHHHHHHHH---c---CCCEEEEehHhhcCCCHHHHH
Confidence 5688999999765554443 2 778888888888755554443
No 13
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=26.13 E-value=81 Score=29.92 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=26.9
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhH
Q 007615 545 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSL 587 (596)
Q Consensus 545 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~f 587 (596)
+-|+..||+|-..++.+.. . |.+.+++++.|.+.++.
T Consensus 161 ~~v~a~GGI~~~~i~~~~~---~---Ga~gv~~gs~i~~~~d~ 197 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLE---A---GADGVAVVSAITGAEDP 197 (212)
T ss_pred CCEEEECCcCHHHHHHHHH---c---CCCEEEEeHHhhcCCCH
Confidence 6789999999765554433 2 78888888889875543
No 14
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.87 E-value=3.8e+02 Score=26.24 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=35.4
Q ss_pred eEEecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHhcCCc
Q 007615 278 MKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSL 338 (596)
Q Consensus 278 ~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~ 338 (596)
.++..++.|++|.+.++ .+.+.-..|++..+.+..-.++++++..++.++...+..|...
T Consensus 13 ~~~k~~E~D~~F~~~k~-yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~ 72 (234)
T cd07664 13 MTIKMNESDAWFEEKQQ-QFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNS 72 (234)
T ss_pred ccccccCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667788999999886 4555555555544444433444444434566666666665443
No 15
>PRK10039 hypothetical protein; Provisional
Probab=21.59 E-value=1.5e+02 Score=25.97 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=31.9
Q ss_pred CcEEEEEE----EcCcCHHHHHHHHHHHHhcCCC--ceEEEEecC-CccchhHHHHhh
Q 007615 542 RSLVLVVF----VGGVTFAEISALRFLSAQEGMA--YDVIVGTTK-IISGNSLAETFS 592 (596)
Q Consensus 542 ~~~viVfv----iGGvTy~Ei~~l~~l~~~~~~~--~~iiigsT~-ii~~~~fi~~l~ 592 (596)
.+++||=- =||.|-=|.|+++|++...++. +.+++..+. -++-.+.++.+.
T Consensus 68 ~p~viIh~le~~EGGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 68 RTHIIIHALEMNEGGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCEEEEEecccCCCCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 34555543 3899999999999998764322 345444443 456566665543
No 16
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=20.45 E-value=1.2e+02 Score=28.64 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=29.6
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHh
Q 007615 545 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETF 591 (596)
Q Consensus 545 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l 591 (596)
+-|++.||+|-.- ++++.+. +.+.++.++.++++.+.-+.+
T Consensus 166 ~~i~v~GGI~~en---v~~l~~~---gad~iivgsai~~~~d~~~~~ 206 (210)
T TIGR01163 166 ILIEVDGGVNDDN---ARELAEA---GADILVAGSAIFGADDYKEVI 206 (210)
T ss_pred ceEEEECCcCHHH---HHHHHHc---CCCEEEEChHHhCCCCHHHHH
Confidence 4578999999644 4554433 788899999999877755544
No 17
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=20.04 E-value=1.6e+02 Score=27.63 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=29.9
Q ss_pred cEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHH
Q 007615 543 SLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET 590 (596)
Q Consensus 543 ~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~ 590 (596)
..+.|.+.||+|-. .+.++.+. |.+.++.++.|...++.-+.
T Consensus 157 ~~~~i~~~GGI~~~---~i~~~~~~---Gad~vvvGsai~~~~d~~~~ 198 (202)
T cd04726 157 LGVKVAVAGGITPD---TLPEFKKA---GADIVIVGRAITGAADPAEA 198 (202)
T ss_pred cCCCEEEECCcCHH---HHHHHHhc---CCCEEEEeehhcCCCCHHHH
Confidence 35789999999943 34455444 78888888999877665443
Done!