Query 007615
Match_columns 596
No_of_seqs 163 out of 1039
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_A UNC18; exocytosis, exoc 100.0 1.8E-95 6E-100 816.5 48.8 552 16-594 3-615 (650)
2 1epu_A S-SEC1; parallel beta-s 100.0 2.6E-95 9E-100 810.1 38.8 551 16-593 2-587 (591)
3 3puk_A Syntaxin-binding protei 100.0 2.4E-95 8E-100 802.9 33.1 542 15-593 8-579 (592)
4 1dn1_A NSEC1, syntaxin binding 100.0 1.4E-93 4.7E-98 789.2 43.4 549 15-593 4-584 (594)
5 3c98_A Syntaxin-binding protei 100.0 5.9E-93 2E-97 792.9 42.5 556 10-593 11-596 (606)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 3.3E-88 1.1E-92 759.5 38.6 548 14-593 16-660 (671)
7 1y9j_A SEC1 family domain cont 99.9 9E-24 3.1E-28 190.3 9.4 122 15-142 20-159 (159)
8 1y0e_A Putative N-acetylmannos 17.0 88 0.003 28.5 3.5 44 545-594 176-220 (223)
9 2x5n_A SPRPN10, 26S proteasome 16.9 2.5E+02 0.0086 25.0 6.5 52 540-594 104-158 (192)
10 1tqx_A D-ribulose-5-phosphate 16.3 96 0.0033 28.8 3.5 37 544-586 173-209 (227)
No 1
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=1.8e-95 Score=816.48 Aligned_cols=552 Identities=16% Similarity=0.244 Sum_probs=444.5
Q ss_pred HHHHHHHHHHH-HHhhcC---CCceEEEEcCCCccccccccCchhHHHcCCe-EEEec--CCCCCCCCceEEEEECCChH
Q 007615 16 SIREQSQRDLV-NILKNI---RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFI 88 (596)
Q Consensus 16 ~lr~~~~~~l~-~~l~~~---~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r~~~~~~~~~~vy~i~p~~~ 88 (596)
+||+.+|++|+ ++| ++ +||||||+|+.+.++||++|++++|+++||+ ++.|+ |+|+|. .+|||||+|+.+
T Consensus 3 ~l~~~~r~~ll~~~l-~v~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~--~~aIyfv~Pt~~ 79 (650)
T 2xhe_A 3 SLKSAVKTVLTNSLR-SVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQ--FHGVYFIEPTEE 79 (650)
T ss_dssp CHHHHHHHHHHHHHT-TCCCCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTT--SEEEEEECSCHH
T ss_pred cHHHHHHHHHHHHHh-ccccCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCC--CCEEEEEcCCHH
Confidence 48999999999 999 88 7999999999999999999999999999999 89997 578864 789999999999
Q ss_pred HHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhhcccccee-EEEEeceeeecCCCeeEecCcchhhhhcc-cC
Q 007615 89 SMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQV-DG 166 (596)
Q Consensus 89 ~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-i~e~~~df~pld~~lfsl~~~~~f~~~~~-~~ 166 (596)
|+++|++|+++.. +.|++|||+|+|.++....+.|++.++.+.|. |.|+++||+|+|+|+|||++|++|..+|. .+
T Consensus 80 ni~~i~~d~~~~~--~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~ 157 (650)
T 2xhe_A 80 NLDYVIRDFADRT--PTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS 157 (650)
T ss_dssp HHHHHHHHHHSSS--CSBSCEEEEESSCCCHHHHHHHHHSGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred HHHHHHHHHhhcC--CCcceEEEEeCCCCCHHHHHHHHhcchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence 9999999998732 58999999999998887777777778888885 99999999999999999999999999984 67
Q ss_pred CcchHHHHHHHHHHHHHHcCCCCeEEEeCC---chHHHHHHHH-HhhhccCCCCC-CCCCCCcceEEEEecCCCCccccc
Q 007615 167 DASSLWHIAKAIHKLEFTFGLIPNVRAKGK---ASVRVAEILN-RMQTEEPVSLS-DMNIPEINTLVLIDREVDMVTPMC 241 (596)
Q Consensus 167 ~~~~l~~ia~~L~~l~~~~g~~p~I~~~g~---~s~~va~~l~-~l~~~~~~~~~-~~~~~~~~~LiIlDR~~DliTPll 241 (596)
+.+.++.+|++|+++|.++|.+|.|||.|+ .|++||++++ ++......... ......+++|||+||++|++|||+
T Consensus 158 ~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLl 237 (650)
T 2xhe_A 158 SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSPLV 237 (650)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHHHHTTTSCCCCCCSSCCEEEEECGGGCSSTTTS
T ss_pred chHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHhhccCCcccCCCCCCCCEEEEEcCCcchhhhcc
Confidence 788999999999999999999999999986 5999999998 56541111111 112456889999999999999999
Q ss_pred chhhhhHHhhhhhcccCCeEEeCccccccccCCCCeeEEecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhcc-
Q 007615 242 SQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTT- 320 (596)
Q Consensus 242 ~~~TYqali~dl~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~- 320 (596)
||||||||+||+|||++|+|+++....++ ..+++++.|+++|++|+++||+||++|++.|.++++++++++++.+.
T Consensus 238 hq~TYqaLi~dll~I~~n~v~~~~~~~~~---~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~ 314 (650)
T 2xhe_A 238 HELTYQAAAYDLLNIENDIYSYSTVDAGG---REQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQGL 314 (650)
T ss_dssp CCCBHHHHHHHHSCCBTTEEEEEECCSSC---CSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHHHHHHHhcCcCCEEEEEecCCCC---CccceEEeCCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999998643211 12468899999999999999999999999999999999999877651
Q ss_pred -----cccCHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCCh-----hhHHHHHHHH
Q 007615 321 -----MSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSY-----DICFEYIEEM 386 (596)
Q Consensus 321 -----~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~-----~~~~~~i~~~ 386 (596)
...++++|++||++||+|++ +++|++||++|++.+++ +|++++++||++++|.+. +..++.|+++
T Consensus 315 ~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~~l 393 (650)
T 2xhe_A 315 RDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASV 393 (650)
T ss_dssp CCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSCCBCCCHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccchhHHHHHHHHH
Confidence 12589999999999999986 99999999999999999 999999999999999875 4567889998
Q ss_pred Hh-cCCChHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHhCh--hHHHHHHHHHhcCCcccccC--CcchHHHHhhccc
Q 007615 387 IH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGF--EHMATLNNLEKAGLFKKQET--KSNWQLVKRALQL 461 (596)
Q Consensus 387 i~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~G~--~~~~~l~~L~~~gl~~~~~~--~~~~~~i~k~~~l 461 (596)
|. .+.+..|+|||+|||+++++|+++++++. +++.||+ +++.++.||+++|+...+.. +..|...
T Consensus 394 l~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~----ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~~~~~~~~------ 463 (650)
T 2xhe_A 394 VVDRRVSTEDKLRCLMLCVLAKNGTSSHELNN----LLDNANIATPSRSAIYNLEMLGATVVADRRGRKPKTMK------ 463 (650)
T ss_dssp HHCTTSCHHHHHHHHHHHHHHHTCBCHHHHHH----HHHHTTCCGGGGHHHHGGGGGTCCCBGGGCCCCCCCCC------
T ss_pred HhCCCCCHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHcCCCHHHHHHHHHHHHhCCccccccccccccccc------
Confidence 87 67899999999999999999999988754 6899999 89999999999999865431 1122110
Q ss_pred ccccCCCCCCCcccccCCccccHHHHHHHHHHcC-----CcchHHhhccCCCCc-c--ccccCCCCCCCCcc--cccCCC
Q 007615 462 VEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSG-----WRPMEEILKLLPGPH-Y--ETKRGGFSSSPSFD--MSQGLS 531 (596)
Q Consensus 462 ~~~~~~~~~~d~~~~~sgy~Pl~~rlve~~~~~~-----~~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~--~~~~~~ 531 (596)
. . .++.+|+|+||+|+++|++|.++++. |+.++.......+.. . ........+..+.+ .|.+..
T Consensus 464 --r---k-~~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~w~~~~ 537 (650)
T 2xhe_A 464 --R---I-ERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNWAKNK 537 (650)
T ss_dssp --C---C-CCCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC---------------------------
T ss_pred --c---c-ccCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCccccccccccccccccccccccccccccccccc
Confidence 0 0 12238999999999999999999974 432211110000000 0 00000000000110 111100
Q ss_pred CC---------------ccc--CCCCCCcEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHhhhh
Q 007615 532 SS---------------IDK--VGDGRRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSEN 594 (596)
Q Consensus 532 ~~---------------~~~--~~~~~~~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l~~~ 594 (596)
.. ..+ ....+++++||||||||||+|+|++|+|+++. +++||||||+|+||++||+++...
T Consensus 538 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~--~~~viigsT~Iln~~~fl~~l~~l 615 (650)
T 2xhe_A 538 GNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSS--GYEVYIGAHNIATPAEFVELVSLL 615 (650)
T ss_dssp ------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTTS--SSEEEEEEEEECCHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcC--CCEEEEeeCCcCCHHHHHHHHHHc
Confidence 00 000 00245688999999999999999999999764 899999999999999999999753
No 2
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=2.6e-95 Score=810.15 Aligned_cols=551 Identities=16% Similarity=0.268 Sum_probs=436.7
Q ss_pred HHHHHHHHHHH-HHhhcC---CCceEEEEcCCCccccccccCchhHHHcCCe-EEEec--CCCCCCCCceEEEEECCChH
Q 007615 16 SIREQSQRDLV-NILKNI---RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFI 88 (596)
Q Consensus 16 ~lr~~~~~~l~-~~l~~~---~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r~~~~~~~~~~vy~i~p~~~ 88 (596)
+|++.+|++++ ++++.+ +||||||+|+.+.++||++|++++|+++||+ ++.|+ |+|+|. .+|||||+|+.+
T Consensus 2 ~l~~~~~~~~~~~i~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~--~~aIy~v~Pt~~ 79 (591)
T 1epu_A 2 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPL--LEAVYLITPTEE 79 (591)
T ss_dssp CHHHHHHHHHHHHTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEE--EEEEEEECCCHH
T ss_pred ChHHHHHHHHHHHHHHhhccCCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCC--CCeEEEecCCHH
Confidence 48899999988 777655 6999999999999999999999999999999 88887 678764 789999999999
Q ss_pred HHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhhcccccee-EEEEeceeeecCCCeeEecCcchhhhhccc--
Q 007615 89 SMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVD-- 165 (596)
Q Consensus 89 ~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-i~e~~~df~pld~~lfsl~~~~~f~~~~~~-- 165 (596)
|+++|++|+++. ..+.|++|||+|+|+++..+.+.|++.++.+.|. +.|+++||+|+|+|+|||++|++|..+|.+
T Consensus 80 ni~~i~~d~~~~-~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~~ 158 (591)
T 1epu_A 80 SVKCLMADFQNP-DNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSR 158 (591)
T ss_dssp HHHHHHHHTSST-TSCSEEEEEEEESSCCCHHHHHHHHHSTTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGG
T ss_pred HHHHHHHHHhhc-ccccCCeEEEEECCCCCHHHHHHHHhCchHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCcc
Confidence 999999999862 2359999999999999999999999999888885 999999999999999999999999999975
Q ss_pred --CCcchHHHHHHHHHHHHHHcCCCCeEEEeCC--chHHHHHHHH-HhhhccC--CCCCCCCCCCcceEEEEecCCCCcc
Q 007615 166 --GDASSLWHIAKAIHKLEFTFGLIPNVRAKGK--ASVRVAEILN-RMQTEEP--VSLSDMNIPEINTLVLIDREVDMVT 238 (596)
Q Consensus 166 --~~~~~l~~ia~~L~~l~~~~g~~p~I~~~g~--~s~~va~~l~-~l~~~~~--~~~~~~~~~~~~~LiIlDR~~DliT 238 (596)
++.+.++.+|++|+++|.++|.+|.|||.|+ .|++||+.++ ++.++.. ..+.....+.+++|||+||++|++|
T Consensus 159 ~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vT 238 (591)
T 1epu_A 159 AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPIS 238 (591)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCSSG
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEECCCccchh
Confidence 6678999999999999999999999999986 6999999998 4554321 1111111356889999999999999
Q ss_pred cccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCeeEEecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhh
Q 007615 239 PMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEV 318 (596)
Q Consensus 239 Pll~~~TYqali~dl~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~ 318 (596)
||+||||||||+||+|||++|+|+++....+ ..+++++.|+++|++|+++||+||++|++.|+++++++++++++.
T Consensus 239 PLlhq~TYqali~dll~I~~n~v~~~~~~~~----~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~ 314 (591)
T 1epu_A 239 PLLHELTFQAMAYDLLPIENDVYKYVNTGGN----EVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMG 314 (591)
T ss_dssp GGSCCCBHHHHHHHHSCCBTTEECC---------------CEECCGGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhhhhhHHHHHHHHhCcCCCEEEEEecCCC----CccceEEeCCCCChHHHHHhccCHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999764211 124578999999999999999999999999999999999987655
Q ss_pred c--ccccCHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCChh-----hHHHHHHHHH
Q 007615 319 T--TMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEYIEEMI 387 (596)
Q Consensus 319 ~--~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~i~~~i 387 (596)
+ +. .++++|++||++||++++ +++|++||++|++.+++ +|++++++||++++|.+.+ ..++.|++++
T Consensus 315 ~~~~~-~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~k~~~~~i~~~l 392 (591)
T 1epu_A 315 TAADK-AGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPIL 392 (591)
T ss_dssp -------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBCTTSCBCCCCHHHHHHHH
T ss_pred ccccc-cCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccccchHHHHHHHHH
Confidence 4 33 588999999999999987 99999999999999999 9999999999999998753 5677888866
Q ss_pred h-cCCChHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHhCh--hHHHHHHHHHhcCCcccccC--CcchHHHHhhcccc
Q 007615 388 H-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGF--EHMATLNNLEKAGLFKKQET--KSNWQLVKRALQLV 462 (596)
Q Consensus 388 ~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~G~--~~~~~l~~L~~~gl~~~~~~--~~~~~~i~k~~~l~ 462 (596)
. .+.+.+|+|||+|||+++++|++++++++ +++.||+ +++.++.||+++|+...++. +..|.. .+.
T Consensus 393 ~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~----ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~~~~~~~~-----~~~ 463 (591)
T 1epu_A 393 LDQKISAYDKIRIILLYIIHKGGISEENLAK----LVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQP-----YHT 463 (591)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHTCBCHHHHHH----HHHHTTCCHHHHHHHHHGGGGTCCCBSCTTSCCCCCT-----TSG
T ss_pred hCCCCCHHHHHHHHHHHHHHcCCCCHHHHHH----HHHhcCCCHHHHHHHHHHHHcCCccccCCcccccccc-----ccc
Confidence 4 67899999999999999999999988763 6899999 78999999999998765432 122221 001
Q ss_pred cccCCCCCCCcccccCCccccHHHHHHHHHHcCCcchHHhhccCCCCccccccCCCCCCCCcc--cccCCCCCcccCCCC
Q 007615 463 EDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFD--MSQGLSSSIDKVGDG 540 (596)
Q Consensus 463 ~~~~~~~~~d~~~~~sgy~Pl~~rlve~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 540 (596)
. .....++|.+|+|+||+|+++|++|.++++..+. +++ +.+.++..... ..+..+.+ .|.+..+.. ...
T Consensus 464 ~-~~~~~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~-~~~-~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~---~~~ 534 (591)
T 1epu_A 464 H-NRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDT-RHY-PFLNGGGPRPS---CQQPVSVRYGHWHKDKGQA---SYK 534 (591)
T ss_dssp G-GSCCCCSCCSCGGGCCCCHHHHHHHHHHTTCSCT-TTS-CBTTSCC-------------------------------C
T ss_pred c-ccccCCCCccccccccchhHHHHHHHHhcCCCCc-ccC-cccCCCCCccc---cCCccccccCcccCCCCcc---ccC
Confidence 0 1123567889999999999999999999974321 111 11111110000 00000111 111110000 123
Q ss_pred CCcEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHhhh
Q 007615 541 RRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 593 (596)
Q Consensus 541 ~~~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l~~ 593 (596)
.++++|||||||+||+|++++|+++++...+++|+||||+|+||++|++++..
T Consensus 535 ~~~~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~viigsT~i~n~~~fl~~l~~ 587 (591)
T 1epu_A 535 SGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRK 587 (591)
T ss_dssp CCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCHHHHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhhccCCCeEEEecCCcCCHHHHHHHHHH
Confidence 45679999999999999999999998433489999999999999999999864
No 3
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=2.4e-95 Score=802.92 Aligned_cols=542 Identities=16% Similarity=0.251 Sum_probs=436.4
Q ss_pred HHHHHHHHHHHHH-HhhcC---CCceEEEEcCCCccccccccCchhHHHcCCe-EEEec--CCCCCCCCceEEEEECCCh
Q 007615 15 KSIREQSQRDLVN-ILKNI---RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQF 87 (596)
Q Consensus 15 ~~lr~~~~~~l~~-~l~~~---~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r~~~~~~~~~~vy~i~p~~ 87 (596)
.+||++++++|++ +|+++ ++|||||+|+.+.++||++|++++|+++||+ ++.|+ |+|+|. ++|||||+||.
T Consensus 8 ~~lk~~~~~~l~~~~l~~v~~~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~--~~aIYfv~Pt~ 85 (592)
T 3puk_A 8 RGLKSVVWRKIKTAVFDDCRKEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQ--MKALYFISPTP 85 (592)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTT--SCEEEEECSCH
T ss_pred hhHHHHHHHHHHHHHHHhhcccCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCC--CcEEEEEeCCH
Confidence 4699999999996 89988 6899999999999999999999999999999 89886 678864 68999999999
Q ss_pred HHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhhcccccee-EEEEeceeeecCCCeeEecCcchhhhhcccC
Q 007615 88 ISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVDG 166 (596)
Q Consensus 88 ~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-i~e~~~df~pld~~lfsl~~~~~f~~~~~~~ 166 (596)
+|+++|++|++++ .++.|++|||+|+|.++....+.| ++++.+.|. +.|+++||+|+|+|+|||++|++|..+|.++
T Consensus 86 eni~~i~~dl~~~-~~~~Y~~~~i~F~~~~~~~lle~L-~~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~~~ 163 (592)
T 3puk_A 86 KSVDCFLRDFGSK-SEKKYKAAYIYFTDFCPDSLFNKI-KASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSPD 163 (592)
T ss_dssp HHHHHHHHHHTGG-GCCCBSCEEEEESSCCCHHHHHHH-HHSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSCCS
T ss_pred HHHHHHHHHHhcc-ccccCCeEEEEECCCCCHHHHHHH-HhhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcCCc
Confidence 9999999999863 246899999999999888777777 788999995 9999999999999999999999999999853
Q ss_pred ------CcchHHHHHHHHHHHHHHcCCCCeEEEeCC---chHHHHHHHH-HhhhccCCCCCCC-CCCCcceEEEEecCCC
Q 007615 167 ------DASSLWHIAKAIHKLEFTFGLIPNVRAKGK---ASVRVAEILN-RMQTEEPVSLSDM-NIPEINTLVLIDREVD 235 (596)
Q Consensus 167 ------~~~~l~~ia~~L~~l~~~~g~~p~I~~~g~---~s~~va~~l~-~l~~~~~~~~~~~-~~~~~~~LiIlDR~~D 235 (596)
+.+.++.+|++|+++|.++|.+|.|||.|+ .|++||++++ ++.++...+.... ..+.+++|||+||++|
T Consensus 164 ~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D 243 (592)
T 3puk_A 164 PSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFD 243 (592)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSSHHHHHHHHHHHHHHHSSSSCSSCSCCSCCSEEEEEEEGGGC
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchHHHHHHHHHHHHHHHHHHhccCCCcCCCCCCceEEEecCCcc
Confidence 457889999999999999999999999986 3679999998 7766322211111 1257889999999999
Q ss_pred CcccccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCeeEEecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 007615 236 MVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDY 315 (596)
Q Consensus 236 liTPll~~~TYqali~dl~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~ 315 (596)
++|||+||||||||+||+|||++|.|+++.. |+++++.|+++|++|.++||+||++|++.|.++++++++++
T Consensus 244 ~vtPLlh~~TYqalv~dll~i~~~~v~~~~~--------g~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~ 315 (592)
T 3puk_A 244 PVSTVLHELTFQAMAYDLLPIENDTYKYKTD--------GKEKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMKEISSTK 315 (592)
T ss_dssp SSTTTSCCCBHHHHHHHHSCCGGGEEECCSS--------SSCCEEECSTTSSSTTTTTTSBHHHHHTTSCSCSTTTTTCC
T ss_pred ccccccccccHHHHHHHHhcccCCEEEecCC--------CceeEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999752 34678999999999999999999999999999999998887
Q ss_pred HhhcccccCHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCChh-----hHHHHHHHH
Q 007615 316 TEVTTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEYIEEM 386 (596)
Q Consensus 316 ~~~~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~i~~~ 386 (596)
+...+. .++++|++||++||++++ ++.|++||++|++.+++ +|++++++||++++|.+.+ ..++.|.++
T Consensus 316 ~~~~~~-~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~~ 393 (592)
T 3puk_A 316 KATEGK-TSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPV 393 (592)
T ss_dssp --------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSSSCTTCCSCSCCHHHHTTT
T ss_pred hcccCC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCccchhhHHHHHHHHHH
Confidence 665554 689999999999999986 99999999999999997 8999999999999997653 356677766
Q ss_pred Hh-cCCChHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHhChh-HHHHHHHHHhcCCcccccCCcchHHHHhhcccccc
Q 007615 387 IH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFE-HMATLNNLEKAGLFKKQETKSNWQLVKRALQLVED 464 (596)
Q Consensus 387 i~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~G~~-~~~~l~~L~~~gl~~~~~~~~~~~~i~k~~~l~~~ 464 (596)
|. .+.+.+|||||+|||+++++|+++++++.+ ++.+|++ +..++.||+.+|+...++.+ . .+..
T Consensus 394 L~~~~~~~~dkLRL~lLy~L~~~g~~~~~~~~L----l~~~g~~~~~~~i~nl~~lg~~~~~~~~-~-------~~~~-- 459 (592)
T 3puk_A 394 LLNKNHDNCDKIRAVLLYIFGINGTTEENLDRL----IHNVKIEDDSDMIRNWSHLGVPIVPPSQ-Q-------AKPL-- 459 (592)
T ss_dssp TTSCSCCHHHHHHHHHHHHHHSCBCCHHHHHHH----HHHTCCCTTTHHHHGGGGGTCCSSSSBS-S-------CCCC--
T ss_pred HhCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH----HHHcCCChHHHHHHHHHHhCCccccCcc-c-------cCcc--
Confidence 55 678999999999999999999999887665 6788987 67889999999986544321 1 1111
Q ss_pred cCCCCCCCcccccCCccccHHHHHHHHHHcCCcchHHhhccCCCCccccccCCCCCCCCcccccCCCCCcccCCCCCCcE
Q 007615 465 TDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKVGDGRRSL 544 (596)
Q Consensus 465 ~~~~~~~d~~~~~sgy~Pl~~rlve~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (596)
....+.|..|.+|||+|++++++|+++++.++. + ..+.+.++... +..++..+.|. +.+..........+++
T Consensus 460 -rk~~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~-~-~fP~~~~~~~~---~~~~~~~s~r~--~~w~~~~~~~~~~~~r 531 (592)
T 3puk_A 460 -RKDRSAEETFQLSRWTPFIKDIMEDAIDNRLDS-K-EWPYCSRCPAV---WNGSGAVSARQ--KPRTNYLELDRKNGSR 531 (592)
T ss_dssp -CCCCCCCCGGGSCCCCCTTHHHHHHHHTCCCCT-T-TSCC-------------------------CCCCCCCCCSCCSE
T ss_pred -cccCCCCcceeeeccchHHHHHHHHHHhCCCCc-c-cCCccCCCCCC---ccCCccccccc--cccccCccccccCCCe
Confidence 012346788999999999999999999976543 1 12222222100 00000112221 1110000011345789
Q ss_pred EEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHhhh
Q 007615 545 VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 593 (596)
Q Consensus 545 viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l~~ 593 (596)
+||||+||+||+|+|++|++++.. ++++|+||||+|+||++|++++..
T Consensus 532 iiVFivGGvTysE~r~~~els~~~-~~~~vilG~T~i~np~~fl~~l~~ 579 (592)
T 3puk_A 532 LIIFVIGGITYSEMRCAYEVSQAH-KSCEVIIGSTHILTPRKLLDDIKM 579 (592)
T ss_dssp EEEEEETCEEHHHHHHHHHHHHHC-CSSEEEEEESSEECHHHHHHHHSS
T ss_pred EEEEEeCCcCHHHHHHHHHHHhhc-CCceEEEeeCCcCCHHHHHHHHHH
Confidence 999999999999999999999984 468999999999999999999864
No 4
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=1.4e-93 Score=789.23 Aligned_cols=549 Identities=16% Similarity=0.260 Sum_probs=439.5
Q ss_pred HHHHHHHHHHHHH-HhhcC---CCceEEEEcCCCccccccccCchhHHHcCCe-EEEec--CCCCCCCCceEEEEECCCh
Q 007615 15 KSIREQSQRDLVN-ILKNI---RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQF 87 (596)
Q Consensus 15 ~~lr~~~~~~l~~-~l~~~---~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r~~~~~~~~~~vy~i~p~~ 87 (596)
-+||++++++|++ +|+++ ++|||||+|+.++++||++|++++|+++||+ ++.|+ |+|+|. ++|||||+||.
T Consensus 4 ~~lk~~~~~~l~~~~l~~~~~~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~--~~aIYfv~Pt~ 81 (594)
T 1dn1_A 4 IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS--LEAVYLITPSE 81 (594)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTT--SEEEEEECCCH
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCC--CceEEEEeCCH
Confidence 3599999999996 78886 6899999999999999999999999999999 89986 678874 78999999999
Q ss_pred HHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhhcccccee-EEEEeceeeecCCCeeEecCcchhhhhcc--
Q 007615 88 ISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQV-- 164 (596)
Q Consensus 88 ~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-i~e~~~df~pld~~lfsl~~~~~f~~~~~-- 164 (596)
+|+++|++|++++ .++.|++|||+|+|.++....+.|++.++.+.|. |.|+++||+|+|+|+|||++|++|..+|.
T Consensus 82 ~ni~~i~~d~~~~-~~~~Y~~y~i~Ft~~~~~~~le~La~~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~ 160 (594)
T 1dn1_A 82 KSVHSLISDFKDP-PTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPH 160 (594)
T ss_dssp HHHHHHHHTTSSG-GGCCCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGG
T ss_pred HHHHHHHHHHhcc-cccccceEEEEeCCCCCHHHHHHHHhcchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCCc
Confidence 9999999999853 2469999999999999988888999999999996 99999999999999999999999999998
Q ss_pred --cCCcchHHHHHHHHHHHHHHcCCCCeEEEeCCc--hHHHHHHHH-HhhhccCCC--CCCCCCCCcceEEEEecCCCCc
Q 007615 165 --DGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKA--SVRVAEILN-RMQTEEPVS--LSDMNIPEINTLVLIDREVDMV 237 (596)
Q Consensus 165 --~~~~~~l~~ia~~L~~l~~~~g~~p~I~~~g~~--s~~va~~l~-~l~~~~~~~--~~~~~~~~~~~LiIlDR~~Dli 237 (596)
+++.+.++.+|++|+++|.++|.+|.|||.|+. |+++|++++ ++......+ ........+++|||+||++|++
T Consensus 161 ~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~v 240 (594)
T 1dn1_A 161 KAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPS 240 (594)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCcccc
Confidence 445678999999999999999999999999875 678888887 565432211 1111135678999999999999
Q ss_pred ccccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCeeEEecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHh
Q 007615 238 TPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTE 317 (596)
Q Consensus 238 TPll~~~TYqali~dl~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~ 317 (596)
|||+||||||||+||+|||++|.|+++....+ +.+++++.|+++|++|.++||+||++|++.|.+++++++++++.
T Consensus 241 TPLlhq~TYqalv~dll~I~~n~v~~~~~~~~----~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~ 316 (594)
T 1dn1_A 241 SPVLHELTFQAMSYDLLPIENDVYKYETSGIG----EARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRM 316 (594)
T ss_dssp TTTSCCCBHHHHHHHHSCCBTTEEEEEECSSS----SCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccccHHHHHHHHhcccCCEEEecCCCCC----CccceEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999764211 12468899999999999999999999999999999999998765
Q ss_pred h-cccccCHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCChh-----hHHHHHHHHH
Q 007615 318 V-TTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEYIEEMI 387 (596)
Q Consensus 318 ~-~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~i~~~i 387 (596)
. .+. .++++|++||++||++++ ++.|++||++|++.+++ .|++++++||++++|.+.+ ..++.|+++|
T Consensus 317 ~~~~~-~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~lL 394 (594)
T 1dn1_A 317 NTGEK-TTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPIL 394 (594)
T ss_dssp --------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHH
T ss_pred ccccc-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHH
Confidence 4 233 588999999999999987 99999999999999987 8999999999999997643 4678888888
Q ss_pred h-cCCChHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH--hChhHHHHHHHHHhcCCcccccCCcchHHHHhhcccccc
Q 007615 388 H-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHS--YGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVED 464 (596)
Q Consensus 388 ~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~--~G~~~~~~l~~L~~~gl~~~~~~~~~~~~i~k~~~l~~~ 464 (596)
. .+.+.+|||||+|||+++.+|+++++++.+. ++ +|.+++.++.||+++|+...++.. .++..+...
T Consensus 395 ~~~~~~~~dkLRL~~Ly~l~~~g~~~~~~~~L~----~~~~~~~~~~~~i~nl~~lG~~~~~~~~-----~~k~~~~~~- 464 (594)
T 1dn1_A 395 LDANVSTYDKIRIILLYIFLKNGITEENLNKLI----QHAQIPPEDSEIITNMAHLGVPIVTDST-----LRRRSKPER- 464 (594)
T ss_dssp HCTTSCHHHHHHHHHHHHHHTTCBCHHHHHHHH----HHHTCCHHHHHHHHHGGGGTCCCBCCCG-----GGCCCCCCC-
T ss_pred hCCCCChHhHHHHHHHHHHHcCCCCHHHHHHHH----HHcCCCHHHHHHHHHHHHhCCccccccc-----ccccccccc-
Confidence 5 6789999999999999999999999887764 44 567889999999999976443321 011111110
Q ss_pred cCCCCCCCcccccCCccccHHHHHHHHHHcCCcchHHhhccCCCCccccccCCCCCCCCccc--ccCCCCCcccCCCCCC
Q 007615 465 TDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDM--SQGLSSSIDKVGDGRR 542 (596)
Q Consensus 465 ~~~~~~~d~~~~~sgy~Pl~~rlve~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 542 (596)
.....+..|.+|||+|++++++|+++++.++.- .++.+.++... .. ..+..|.|. |+.... +. ....+
T Consensus 465 --k~~~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~--~fP~~~~~~~~--~~-~~~~~s~r~~~w~~~~~--~~-~~~~~ 534 (594)
T 1dn1_A 465 --KERISEQTYQLSRWTPIIKDIMEDTIEDKLDTK--HYPYISTRSSA--SF-STTAVSARYGHWHKNKA--PG-EYRSG 534 (594)
T ss_dssp --CCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTT--TSCCSSCC--------------------------------CCC
T ss_pred --ccCCCCccceeeccchHHHHHHHHHHhCCCCcc--cCCccCCCCCc--cc-cccccccccccccccCC--cc-ccccC
Confidence 112345678889999999999999999876641 12233222110 00 011112231 211110 00 12457
Q ss_pred cEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHhhh
Q 007615 543 SLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 593 (596)
Q Consensus 543 ~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l~~ 593 (596)
+++||||+||+||+|+|+++++++.. ++++|+||||+|+||++|+++|..
T Consensus 535 ~riivFivGG~Ty~E~r~~~els~~~-~~~~VilG~t~il~p~~Fl~~l~~ 584 (594)
T 1dn1_A 535 PRLIIFILGGVSLNEMRCAYEVTQAN-GKWEVLIGSTHILTPQKLLDTLKK 584 (594)
T ss_dssp CEEEEEEETCEEHHHHHHHHHHHHHH-SSCEEEEEESSEECHHHHHHHHTT
T ss_pred CcEEEEEeCCccHHHHHHHHHHHhhc-CCceEEEeeCCcCCHHHHHHHHHH
Confidence 89999999999999999999999985 368999999999999999999864
No 5
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=5.9e-93 Score=792.87 Aligned_cols=556 Identities=16% Similarity=0.267 Sum_probs=436.1
Q ss_pred CCCChHHHHHHHHHHHH-HHhhcCC---CceEEEEcCCCccccccccCchhHHHcCCe-EEEec--CCCCCCCCceEEEE
Q 007615 10 APLNLKSIREQSQRDLV-NILKNIR---GKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYF 82 (596)
Q Consensus 10 ~~~~l~~lr~~~~~~l~-~~l~~~~---g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r~~~~~~~~~~vy~ 82 (596)
+.+-..+||++++++++ +++++++ .|||||+|+.+.++||++|++++|+++||+ ++.|+ |+|+|. ++||||
T Consensus 11 ~~~~p~~l~~~~~~~~l~~~i~~v~~~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~--~~aIyf 88 (606)
T 3c98_A 11 GSMAPIGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS--LEAVYL 88 (606)
T ss_dssp -----CCHHHHHHHHHHHHTHHHHCBTTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTT--SCEEEE
T ss_pred CCcCcHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCC--CCEEEE
Confidence 34556679999999988 6998874 499999999999999999999999999999 89996 788874 789999
Q ss_pred ECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHhhcccccee-EEEEeceeeecCCCeeEecCcchhhh
Q 007615 83 VGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKE 161 (596)
Q Consensus 83 i~p~~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-i~e~~~df~pld~~lfsl~~~~~f~~ 161 (596)
|+||.+||++|++|++++ ..+.|++|||+|+|.++..+.+.|++++....|. |.|+++||+|+|+|+|||++|++|..
T Consensus 89 v~Pt~eni~~i~~dl~~~-~~~~Y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~ 167 (606)
T 3c98_A 89 ITPSEKSVHSLISDFKDP-PTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQS 167 (606)
T ss_dssp ECCCHHHHHHHHHTTTSG-GGCCBSCEEEEESSCCCHHHHHHHHTSGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHH
T ss_pred EcCCHHHHHHHHHHhcch-hhcccCeEEEEECCCCCHHHHHHHHhcCcccccCeEEEEecchhhcCCcEEEecCCchHHH
Confidence 999999999999999864 2358999999999999999999999999988886 99999999999999999999999999
Q ss_pred hccc----CCcchHHHHHHHHHHHHHHcCCCCeEEEeCCc--hHHHHHHHHH-h---hhccCCCCCCCCCCCcceEEEEe
Q 007615 162 WQVD----GDASSLWHIAKAIHKLEFTFGLIPNVRAKGKA--SVRVAEILNR-M---QTEEPVSLSDMNIPEINTLVLID 231 (596)
Q Consensus 162 ~~~~----~~~~~l~~ia~~L~~l~~~~g~~p~I~~~g~~--s~~va~~l~~-l---~~~~~~~~~~~~~~~~~~LiIlD 231 (596)
+|.+ .+.+.++.+|++|+++|.++|.+|.|||+|+. |+.+|+++++ + ..... .........+++|||+|
T Consensus 168 l~~~~~~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~~~~~~la~~~~~~l~~~~~~~~-~~~~~~~~~~~~LlIlD 246 (606)
T 3c98_A 168 FYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDP-TMGEGPDKARSQLLILD 246 (606)
T ss_dssp HHCGGGTTSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSHHHHHHHHHHHHHHHHHHHHCT-TTTCSTTTTSCEEEEEE
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHHcCCCCeEEEecCchHHHHHHHHHHHHHHHHHhcCC-cccCCCCCCCceEEEee
Confidence 9863 45567999999999999999999999999863 5666776662 2 22211 11122245688999999
Q ss_pred cCCCCcccccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCeeEEecCCCchhHHHhhccCHHHHHHHHHHHHHHH
Q 007615 232 REVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSM 311 (596)
Q Consensus 232 R~~DliTPll~~~TYqali~dl~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~ 311 (596)
|++|++|||+||||||||+||+|||++|.|+++....+ +++.+++.|+++|++|.++||+||++|++.|.++++++
T Consensus 247 R~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~----~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l~~~~~~~ 322 (606)
T 3c98_A 247 RGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIG----EARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDF 322 (606)
T ss_dssp GGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEESSS----SEEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHH
T ss_pred ccccccchhcccccHHHHHHHHhCccCCeEEEecCCCC----CccceEeecCCCchhHHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999764321 12467899999999999999999999999999999999
Q ss_pred HHHHHhhcccccCHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhcCChh-----hHHHH
Q 007615 312 KQDYTEVTTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD-----ICFEY 382 (596)
Q Consensus 312 ~~~~~~~~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~-----~~~~~ 382 (596)
+++++..+....++++|++||+++|++++ ++.|++||++|++.++ ++|++++++||+|++|.+.+ ..+..
T Consensus 323 ~~~~~~~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~~d~~~~~~~~~~~~ 401 (606)
T 3c98_A 323 SSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRA 401 (606)
T ss_dssp HHHTTC-------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHSBCTTSCBCSCTHHH
T ss_pred HHHHhhhcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 98876554333588999999999999987 9999999999999997 58999999999999987653 35677
Q ss_pred HHHHHh-cCCChHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHhChhHHHHHHHHHhcCCcccccCCcchHHHHhhccc
Q 007615 383 IEEMIH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQL 461 (596)
Q Consensus 383 i~~~i~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~G~~~~~~l~~L~~~gl~~~~~~~~~~~~i~k~~~l 461 (596)
+.+++. .+.+..|||||+|||+++++|+++++++.+.+. ..++.++..++.||+++|....++..... ..+
T Consensus 402 i~~ll~~~~~~~~dkLRL~lLy~l~~~g~~~~~l~~~~~~--~~~~~~~~~~i~~l~~lg~~~~~~~~~~~-----~~~- 473 (606)
T 3c98_A 402 IVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQH--AQIPPEDSEIITNMAHLGVPIVTDSTLRR-----RSK- 473 (606)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTSBCHHHHHHHHHH--HTCCHHHHHHHHHGGGGTCCCBCCCTTTC-----CCC-
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhCCcccccccccc-----ccc-
Confidence 788776 568999999999999999999999998877654 34666778899999999986543321100 000
Q ss_pred ccccCCCCCCCcccccCCccccHHHHHHHHHHcCCcchHHhhccCCCCccccccCCCCCCCCcc--cccCCCCCcccCCC
Q 007615 462 VEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFD--MSQGLSSSIDKVGD 539 (596)
Q Consensus 462 ~~~~~~~~~~d~~~~~sgy~Pl~~rlve~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 539 (596)
......+.+.+|+|+||+|++++++|.++++.++. +.+ +.+.+....... ....+.+ .|.... .+ ...
T Consensus 474 --~~~~~~~~~~~~~~s~~~Pll~~lle~l~k~~L~~-~~~-p~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~-~~~ 543 (606)
T 3c98_A 474 --PERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDT-KHY-PYISTRSSASFS---TTAVSARYGHWHKNK--AP-GEY 543 (606)
T ss_dssp --CCCCCCCCCCCCTTCCCCCHHHHHHHHHHTTCSCT-TTS-CCSSCC--------------------------------
T ss_pred --hhhccCCcccccceecchHHHHHHHHHHHhCCCCc-ccC-cccCCCCccccc---ccccccccCCccccC--CC-CCC
Confidence 00113456788999999999999999999976553 111 122111100000 0000111 011110 00 123
Q ss_pred CCCcEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHhhh
Q 007615 540 GRRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 593 (596)
Q Consensus 540 ~~~~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l~~ 593 (596)
.+++++|||||||+||+|++++|+++++. ++++||||||+|+||++||++|..
T Consensus 544 ~~~~~iIVFvvGGvTy~E~~~l~~ls~~~-~~~~viiGsT~Iln~~~fl~~L~~ 596 (606)
T 3c98_A 544 RSGPRLIIFILGGVSLNEMRCAYEVTQAN-GKWEVLIGSTHILTPQKLLDTLKK 596 (606)
T ss_dssp CCCSEEEEEEETCEEHHHHHHHHHHHHHH-SSCEEEEEESSEECHHHHHHHHTT
T ss_pred CCCCEEEEEEECCcCHHHHHHHHHHHHHc-CCcEEEEEeCCeeCHHHHHHHHHH
Confidence 45678999999999999999999999875 368999999999999999999864
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=3.3e-88 Score=759.54 Aligned_cols=548 Identities=18% Similarity=0.249 Sum_probs=412.7
Q ss_pred hHHHHHHHHHHHHHHhhc---------------------CCCceEEEEcCCCccccccccCchhHHHcCCe-EEEec--C
Q 007615 14 LKSIREQSQRDLVNILKN---------------------IRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--A 69 (596)
Q Consensus 14 l~~lr~~~~~~l~~~l~~---------------------~~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r 69 (596)
-.+||+.+++.|.+||.. .++|||||+|+.+.++||++|++++|+++||+ ++.|+ |
T Consensus 16 ~~~lr~~q~~~l~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~r 95 (671)
T 1mqs_A 16 DISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDR 95 (671)
T ss_dssp CCCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSCC
T ss_pred cccHHHHHHHHHHHHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCCC
Confidence 356999999999999953 35799999999999999999999999999999 89996 5
Q ss_pred CCCCCCCceEEEEECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHh----hcccccee-EEEEeceee
Q 007615 70 EPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEE----EKVHNLMT-IGEYPLYMV 144 (596)
Q Consensus 70 ~~~~~~~~~~vy~i~p~~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~----~~~~~~i~-i~e~~~df~ 144 (596)
+|++. .+|||||+|+.+|+++|++|++++ .|++|||+|+|.++....+.|++ .++.+.|. |.|+++||+
T Consensus 96 ~~~~~--~~aIYfv~Pt~~ni~~i~~d~~~~----~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfi 169 (671)
T 1mqs_A 96 SPLPD--VPAIYFVSPTKENIDIIVNDLKSD----KYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFI 169 (671)
T ss_dssp CCEEE--EEEEEEECSCHHHHHHHHHHHHHT----CEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSE
T ss_pred CCCCC--ceEEEEeCCCHHHHHHHHHHhhhc----ccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEcccee
Confidence 67753 689999999999999999999874 89999999999888776666765 57888885 999999999
Q ss_pred ecCCCeeEecCcchhhhhcccC--Cc---chHHHHHHHHHHHHHHcCCCCeEEE-eCCchHHHHHHHHHh-hhccCC---
Q 007615 145 PLDEDVLSFELDLAHKEWQVDG--DA---SSLWHIAKAIHKLEFTFGLIPNVRA-KGKASVRVAEILNRM-QTEEPV--- 214 (596)
Q Consensus 145 pld~~lfsl~~~~~f~~~~~~~--~~---~~l~~ia~~L~~l~~~~g~~p~I~~-~g~~s~~va~~l~~l-~~~~~~--- 214 (596)
|+|+|+|||++|++|..+|.++ +. +.++.+|++|+++|.++|.+|.||| +|+.|++||++|.++ ..+...
T Consensus 170 ple~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~~a~~va~~L~~~l~~~~~~~~~ 249 (671)
T 1mqs_A 170 VTEPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNS 249 (671)
T ss_dssp ECSTTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eccCCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCChHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999865 33 6799999999999999999999986 689999999999854 332111
Q ss_pred CCCCC----CCCCcceEEEEecCCCCcccccchhhhhHHhhhhhcccCCeEEeCcccccccc-----CCCCeeEEecCCC
Q 007615 215 SLSDM----NIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQ-----QDGKKMKVPLNSS 285 (596)
Q Consensus 215 ~~~~~----~~~~~~~LiIlDR~~DliTPll~~~TYqali~dl~~I~~~~v~~~~~~~~~~~-----~~~~~~~~~L~~~ 285 (596)
+.++. ....+++|||+||++|++|||+||||||||+||+|||++|+|+++....+... +..+++++.|+++
T Consensus 250 ~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 329 (671)
T 1mqs_A 250 SSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPN 329 (671)
T ss_dssp ------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECCCSS
T ss_pred cccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccccceEEecCCC
Confidence 11111 12467899999999999999999999999999999999999999864322100 0123578999999
Q ss_pred chhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhccc-------------ccCHHHHHHHHHhcCCcch----HHHHHHHH
Q 007615 286 DKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTM-------------SQTVSELKDFVKKLNSLPE----MTRHINLA 348 (596)
Q Consensus 286 D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~-------------~~~~~e~~~~v~~lp~~~~----l~~H~~l~ 348 (596)
|++|.++||+||++|++.|.++++++++++++.++. ..++++|++||++||+|++ +++|++||
T Consensus 330 D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia 409 (671)
T 1mqs_A 330 DFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIF 409 (671)
T ss_dssp CTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754331 1468999999999999986 99999999
Q ss_pred HHHHHhcCchhhhhHHHHHHHHHhcCChhhHHHHHHHHHhc--CCChHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHH
Q 007615 349 QHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHK--QEPLNKVLRLLILFSVTNS-GLPKKQFDYLRRELLHS 425 (596)
Q Consensus 349 ~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~~~~i~~~i~~--~~~~~d~lRLl~L~~l~~~-g~~~~~~~~l~~~l~~~ 425 (596)
++|++.+++++|++++++||+|+. ....+.|+++|.. ..+..|||||+|||+++++ |+++++++.+++.+ +.
T Consensus 410 ~~l~~~i~~~~l~~~~e~EQ~l~~----~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~~l~~~l-~~ 484 (671)
T 1mqs_A 410 AALLSQLESKSLDTFFEVEQDPGS----TKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYF-KE 484 (671)
T ss_dssp HHHHHHHHTTTCHHHHHHTSCCSS----HHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHH-HT
T ss_pred HHHHHHHhHhhHHHHHHHHHHHhc----CchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HH
Confidence 999999999999999999999972 2236788999975 3589999999999999999 99999999999887 88
Q ss_pred hChhHHHHHHHHHhcCCcccccCCcchHHHHhhccccc--ccC-----CCC-CCCcccccCCccccHHHHHHHHHHcCCc
Q 007615 426 YGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVE--DTD-----TAN-PNDISYVFSGYAPLSIRLVQNAIRSGWR 497 (596)
Q Consensus 426 ~G~~~~~~l~~L~~~gl~~~~~~~~~~~~i~k~~~l~~--~~~-----~~~-~~d~~~~~sgy~Pl~~rlve~~~~~~~~ 497 (596)
+|++ +..+.+++++|.+. +...+.. ..+ ... ++|. |.|.+.|+++.+..+||.
T Consensus 485 ~G~~-~~~~~~l~~~~~l~------------~~~~l~~~~~~~~~~~~~~~~~~dl------~~~~~~r~~~~~~~~g~~ 545 (671)
T 1mqs_A 485 NDYD-INALKYVYKLREFM------------QLSNMSLQNKSLEDGSDSAFKPSNL------TLSGIYGLTEGKLQGGVG 545 (671)
T ss_dssp TTCC-CTHHHHHHHHHHHH------------HHHHHHSCCCCC------------------------CHHHHHTTTSSCS
T ss_pred cCCC-HHHHHHHHHHHHHh------------ccccccccccccccccccccccccc------ccccHHHHHHHHhccchh
Confidence 9987 44555555544221 1110110 000 000 1221 557777777777665665
Q ss_pred c-hHHhhccCCCCccc-ccc------CC-C---------CCCC--CcccccCCCCCcccCCCCCCcEEEEEEEcCcCHHH
Q 007615 498 P-MEEILKLLPGPHYE-TKR------GG-F---------SSSP--SFDMSQGLSSSIDKVGDGRRSLVLVVFVGGVTFAE 557 (596)
Q Consensus 498 ~-~~~~~~~l~~~~~~-~~~------~~-~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~viVfviGGvTy~E 557 (596)
. ++.+.+.+|+.+.. +++ .+ . ...+ ..+...+.. ...+ .+.+++++|||||||+||+|
T Consensus 546 ~~~~~v~n~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p~~~~~~~-~~~~-~~~~~~~viVFvVGG~Ty~E 623 (671)
T 1mqs_A 546 SLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSH-TRKP-KRQSYNKSLVFVVGGGNYLE 623 (671)
T ss_dssp SSHHHHHHTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTTSSSCSS-SCCC-CCCCCSEEEEEEETCBCHHH
T ss_pred hHHHhHHhhCCCcccchHHHHHHHHHhccccccccCCCccCceeeCCCCcCCCC-CCCc-ccCCCCeEEEEEECCccHHH
Confidence 4 44555666665421 000 00 0 0000 000000000 0011 24567999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEecCCccchhHHHHhhh
Q 007615 558 ISALRFLSAQE-GMAYDVIVGTTKIISGNSLAETFSE 593 (596)
Q Consensus 558 i~~l~~l~~~~-~~~~~iiigsT~ii~~~~fi~~l~~ 593 (596)
++++|+|+++. ..+++|+||||+|+||++|+++|..
T Consensus 624 ~~~l~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~ 660 (671)
T 1mqs_A 624 YQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISR 660 (671)
T ss_dssp HHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCceEEEeeccccCHHHHHHHHHH
Confidence 99999999873 2479999999999999999999754
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.89 E-value=9e-24 Score=190.31 Aligned_cols=122 Identities=22% Similarity=0.297 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHhhc----------CCCceEEEEcCCCccccccccCchhHHHcCCe-EEEec--CCCCCCCCceEEE
Q 007615 15 KSIREQSQRDLVNILKN----------IRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVY 81 (596)
Q Consensus 15 ~~lr~~~~~~l~~~l~~----------~~g~kvLviD~~~~~~ls~~~~~~~L~~~gV~-i~~l~--r~~~~~~~~~~vy 81 (596)
.+||+.++++|+++|+. .++|||||+|+.++++||++|++++|+++||+ ++.|+ |+|++. .+|||
T Consensus 20 ~sLr~~qr~~l~~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~--~~aIY 97 (159)
T 1y9j_A 20 ASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRD--VPAVY 97 (159)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTT--SCCEE
T ss_pred HHHHHHHHHHHHHHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCC--CCEEE
Confidence 48999999999999987 36899999999999999999999999999999 89997 678864 68999
Q ss_pred EECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHh----hcccccee-EEEEece
Q 007615 82 FVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEE----EKVHNLMT-IGEYPLY 142 (596)
Q Consensus 82 ~i~p~~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~----~~~~~~i~-i~e~~~d 142 (596)
||+||.+|+++|++|++++ +|++|||+|+|.++....+.|++ .+....|+ |.|+++|
T Consensus 98 fv~Pt~enI~~i~~D~~~~----~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 98 FVMPTEENIDRLCQDLRNQ----LYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp EECCCHHHHHHHHHHHHHT----CBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred EecCCHHHHHHHHHHhhhc----ccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 9999999999999999874 99999999999999988889988 66777776 8777764
No 8
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=17.04 E-value=88 Score=28.54 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=33.7
Q ss_pred EEEEEEcCc-CHHHHHHHHHHHHhcCCCceEEEEecCCccchhHHHHhhhh
Q 007615 545 VLVVFVGGV-TFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSEN 594 (596)
Q Consensus 545 viVfviGGv-Ty~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~fi~~l~~~ 594 (596)
+-|+..||+ |...+..+... |.+.++.++.+.+|....+.+.+.
T Consensus 176 ipvia~GGI~~~~~~~~~~~~------Gad~v~vG~al~~p~~~~~~~~~~ 220 (223)
T 1y0e_A 176 AKVIAEGNVITPDMYKRVMDL------GVHCSVVGGAITRPKEITKRFVQV 220 (223)
T ss_dssp SEEEEESSCCSHHHHHHHHHT------TCSEEEECHHHHCHHHHHHHHHHT
T ss_pred CCEEEecCCCCHHHHHHHHHc------CCCEEEEChHHcCcHHHHHHHHHH
Confidence 568899999 88887776553 677777778899988777776543
No 9
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=16.90 E-value=2.5e+02 Score=25.00 Aligned_cols=52 Identities=6% Similarity=0.026 Sum_probs=27.9
Q ss_pred CCCcEEEEEEEcCcCH--HHHHHHHHHHHhcCCCceEEEEecCCccch-hHHHHhhhh
Q 007615 540 GRRSLVLVVFVGGVTF--AEISALRFLSAQEGMAYDVIVGTTKIISGN-SLAETFSEN 594 (596)
Q Consensus 540 ~~~~~viVfviGGvTy--~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~-~fi~~l~~~ 594 (596)
..+++||||+.||.+- .++..+-+..++. +.++++.+-.--..+ . ++.+.+.
T Consensus 104 ~~~~riiil~~~~~~~~~~~~~~~a~~lk~~--gi~v~~Ig~G~~~~~~~-l~~la~~ 158 (192)
T 2x5n_A 104 IQRQRIVAFVGSPIVEDEKNLIRLAKRMKKN--NVAIDIIHIGELQNESA-LQHFIDA 158 (192)
T ss_dssp TSEEEEEEEECSCCSSCHHHHHHHHHHHHHT--TEEEEEEEESCC---CH-HHHHHHH
T ss_pred CCCceEEEEEECCCCCCchhHHHHHHHHHHC--CCEEEEEEeCCCCccHH-HHHHHHh
Confidence 3567889999998863 4444443333443 666665433322322 4 7766543
No 10
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=16.26 E-value=96 Score=28.84 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=28.3
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCccchh
Q 007615 544 LVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNS 586 (596)
Q Consensus 544 ~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~ii~~~~ 586 (596)
.+.|.|-||++-.-+..+. +. |.+++|.++.|.+.++
T Consensus 173 ~~~I~VdGGI~~~ti~~~~---~a---GAd~~V~GsaIf~~~d 209 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISA---SH---GANIIVAGTSIFNAED 209 (227)
T ss_dssp TCEEEEESSCCHHHHHHHH---HH---TCCEEEESHHHHTCSS
T ss_pred CCeEEEECCCCHHHHHHHH---Hc---CCCEEEEeHHHhCCCC
Confidence 5678999999987555443 33 7899999999997643
Done!