BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007616
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 153 FEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGN 212
+ G+ LP IA L++L+ L ++ + L ++ L L+ L L C L+ P G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 213 LVNLRHL--KDSHSNLLEEMPLRIGKLTSLRTL 243
L+ L KD SNLL +PL I +LT L L
Sbjct: 252 RAPLKRLILKDC-SNLLT-LPLDIHRLTQLEKL 282
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIK---- 373
L+ L++ G PA + ++ +NL L+ +N P++ HLP L+ L ++
Sbjct: 184 NLQSLRLEWTGIRSLPASI--ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 374 ---------GMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKG 424
G A +K + L+ C N + P L+ +++ + R +++ R P L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLP---LDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 425 RLP 427
+LP
Sbjct: 299 QLP 301
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 42/247 (17%)
Query: 152 RFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIG 211
R L + P+ L HL++ + L ++ L+TL L L+ L I
Sbjct: 89 RSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIA 147
Query: 212 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTI 271
+L LR L L E+P + + G GL L+SL +L
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDA----------SGEHQGLVNLQSL-----RLEW 192
Query: 272 SGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP--HY--GLKELKVRGY 327
+G+ ++ A A L K L KI+ L P H+ L+EL +RG
Sbjct: 193 TGIRSL----PASIANLQNLKSL---------KIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 328 GGTKF--PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKG---MAKVKSV 381
+ P + G++ + L+ K+C+ TLP + L L+ L ++G ++++ S+
Sbjct: 240 TALRNYPPIFGGRAPLKRLI---LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 382 GLEFCGN 388
+ N
Sbjct: 297 IAQLPAN 303
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQT 194
NL +L++L GI G +P IA+L L YL +HT + + + +S + L T
Sbjct: 74 NLPYLNFL--YIGGINNLVG--PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 195 LILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242
L Y L P I +L NL + + + +P G + L T
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 146 RFDGIKRF----EGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCY 201
++D + R L ELP +I L +LR LD SH + L + + + L+ +
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF-FDN 303
Query: 202 RLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRI 234
+ L + GNL NL+ L N LE+ L+I
Sbjct: 304 MVTTLPWEFGNLCNLQFLG-VEGNPLEKQFLKI 335
>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
Carboxylase And Synthetase In Purine Biosynthesis
Length = 425
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 257 KELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH 316
KE+ L+ K+ + + + A++ L GK + NKI +C+F++L+
Sbjct: 19 KEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAIS-------NKITSCIFQLLQ-E 70
Query: 317 YGLKELKVRGYGGTKFPA 334
G+K R G T F A
Sbjct: 71 AGIKTAFTRKCGETAFIA 88
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 120 CMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGL---HELPNDIAE------LKHLR 170
C +S + + + + + ++S F G+++ E L H ++E L++L
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 171 YLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLE 228
YLD SHT V + + L +L+ L + + PDI L NL L S L +
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189
Query: 229 EMPLRIGKLTSLRTL 243
P L+SL+ L
Sbjct: 190 LSPTAFNSLSSLQVL 204
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 120 CMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGL---HELPNDIAE------LKHLR 170
C +S + + + + + ++S F G+++ E L H ++E L++L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 171 YLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLE 228
YLD SHT V + + L +L+ L + + PDI L NL L S L +
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 229 EMPLRIGKLTSLRTL 243
P L+SL+ L
Sbjct: 485 LSPTAFNSLSSLQVL 499
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 141 SYLTSRFDGIKRFEGLHELPNDIAELKHLRYL-DFSHTAIEVLSESVSTLYNLQTLILEY 199
S LT +K HE ++ + L D H I L + + T +L TL+ EY
Sbjct: 23 SKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSL-TLVFEY 81
Query: 200 CYR-LKKLFPDIGNLVNLRHLK 220
+ LK+ D GN++N+ ++K
Sbjct: 82 LDKDLKQYLDDCGNIINMHNVK 103
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 120 CMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGL---HELPNDIAE------LKHLR 170
C +S + + + + + ++S F G+++ E L H ++E L++L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 171 YLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLE 228
YLD SHT V + + L +L+ L + + PDI L NL L S L +
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 229 EMPLRIGKLTSLRTL 243
P L+SL+ L
Sbjct: 485 LSPTAFNSLSSLQVL 499
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 489 NQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSF---------VGNLTSLER 539
NQ + +D L+ L+++ R+ + + + I+ L+ LSF + NLT+LER
Sbjct: 122 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 181
Query: 540 LELPRCPV 547
L++ V
Sbjct: 182 LDISSNKV 189
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 159 LPNDIAELKHLRYLDFSHTAIEV-LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLR 217
+P+ + L LR L +E + + + + L+TLIL++ ++ + N NL
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 218 HLKDSHSNLLEEMPLRIGKLTSLRTL 243
+ S++ L E+P IG+L +L L
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 39/249 (15%)
Query: 147 FDGIKR--FEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLK 204
F I+R F GL L N++ E+K L ++ +++ S+ +++L TL L L
Sbjct: 162 FSEIRRIDFAGLTSL-NEL-EIKALSLRNYQSQSLK----SIRDIHHL-TLHLSESAFLL 214
Query: 205 KLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTS-LRTLA---KFVVGKGNCSGLKELR 260
++F DI + V L+D++ + PL + +++S ++ LA + + LK LR
Sbjct: 215 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 274
Query: 261 SLMHLQE----KLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH 316
++ L E T++GL + N +E ++L K+E ++ + + Q +F L
Sbjct: 275 YILELSEVEFDDCTLNGLGDFNPSESDVVSELG---KVETVTIRRLHIPQFYLFYDLSTV 331
Query: 317 YGLKELKVRGYGGTKFPAWLGQSSF-------------ENLVVLRFKNCNQCTTLPSVGH 363
Y L E KV+ +L SF ENL+V + + C G
Sbjct: 332 YSLLE-KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK-----GA 385
Query: 364 LPSLKNLVI 372
PSL+ LV+
Sbjct: 386 WPSLQTLVL 394
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 489 NQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSF----------VGNLTSLE 538
NQ + +D L+ L+++ R+ + + + I+ L+ LSF + NLT+LE
Sbjct: 117 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 539 RLELPRCPV 547
RL++ V
Sbjct: 177 RLDISSNKV 185
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 159 LPNDIAELKHLRYLDFSHTAIEV-LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLR 217
+P+ + L LR L +E + + + + L+TLIL++ ++ + N NL
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 218 HLKDSHSNLLEEMPLRIGKLTSLRTL 243
+ S++ L E+P IG+L +L L
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 489 NQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSF---------VGNLTSLER 539
NQ + +D L+ L+++ R+ + + + I+ L+ LSF + NLT+LER
Sbjct: 121 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 180
Query: 540 LELPRCPV 547
L++ V
Sbjct: 181 LDISSNKV 188
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 489 NQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSF----------VGNLTSLE 538
NQ + +D L+ L+++ R+ + + + I+ L+ LSF + NLT+LE
Sbjct: 117 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 539 RLELPRCPV 547
RL++ V
Sbjct: 177 RLDISSNKV 185
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 143 LTSRFDGIKRFEGL---HELPNDIAE------LKHLRYLDFSHTAIEVLSESV-STLYNL 192
++S F G+++ E L H ++E L++L YLD SHT V + + L +L
Sbjct: 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 193 QTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
+ L + + PDI L NL L S L + P L+SL+ L
Sbjct: 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 183
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 272 SGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKE 321
SGL +DA+ + A++ E PKWGNKI T V E +K Y +E
Sbjct: 117 SGLFAHSDADLKELAKIK-----EEWQPKWGNKIAT-VIEPIKNFYDAEE 160
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 39/249 (15%)
Query: 147 FDGIKR--FEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLK 204
F I+R F GL L N++ E+K L ++ +++ S+ +++L TL L L
Sbjct: 136 FSEIRRIDFAGLTSL-NEL-EIKALSLRNYQSQSLK----SIRDIHHL-TLHLSESAFLL 188
Query: 205 KLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTS-LRTLA---KFVVGKGNCSGLKELR 260
++F DI + V L+D++ + PL + +++S ++ LA + + LK LR
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248
Query: 261 SLMHLQE----KLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH 316
++ L E T++GL + N +E ++L K+E ++ + + Q +F L
Sbjct: 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELG---KVETVTIRRLHIPQFYLFYDLSTV 305
Query: 317 YGLKELKVRGYGGTKFPAWLGQSSF-------------ENLVVLRFKNCNQCTTLPSVGH 363
Y L E KV+ +L SF ENL+V + + C G
Sbjct: 306 YSLLE-KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK-----GA 359
Query: 364 LPSLKNLVI 372
PSL+ LV+
Sbjct: 360 WPSLQTLVL 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,681,505
Number of Sequences: 62578
Number of extensions: 740806
Number of successful extensions: 1570
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1545
Number of HSP's gapped (non-prelim): 50
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)