Query 007616
Match_columns 596
No_of_seqs 455 out of 3737
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 13:02:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.9E-43 8.5E-48 379.5 13.5 227 12-249 391-629 (889)
2 PLN03210 Resistant to P. syrin 100.0 2E-35 4.4E-40 337.3 21.1 445 15-552 419-910 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1E-27 2.2E-32 274.4 17.9 384 158-571 155-584 (968)
4 PLN00113 leucine-rich repeat r 99.9 1.5E-26 3.2E-31 264.7 19.0 254 125-404 60-317 (968)
5 PLN03210 Resistant to P. syrin 99.9 7E-21 1.5E-25 218.2 21.4 336 160-574 551-909 (1153)
6 KOG4194 Membrane glycoprotein 99.8 7.7E-22 1.7E-26 193.4 3.8 361 133-566 76-447 (873)
7 KOG4194 Membrane glycoprotein 99.8 9.8E-22 2.1E-26 192.7 4.4 329 168-569 79-427 (873)
8 KOG0444 Cytoskeletal regulator 99.8 2.5E-23 5.5E-28 205.1 -6.7 321 158-553 46-380 (1255)
9 KOG0444 Cytoskeletal regulator 99.8 3.8E-22 8.3E-27 196.9 -2.7 273 158-508 94-374 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 7.1E-22 1.5E-26 185.4 -3.7 202 158-376 105-308 (565)
11 KOG0618 Serine/threonine phosp 99.7 2.9E-20 6.4E-25 192.0 -4.5 358 158-571 59-489 (1081)
12 KOG0472 Leucine-rich repeat pr 99.7 9.8E-21 2.1E-25 177.9 -9.5 223 158-404 59-284 (565)
13 KOG0618 Serine/threonine phosp 99.6 3.5E-17 7.5E-22 169.6 -4.6 86 165-252 43-128 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 4.9E-14 1.1E-18 150.7 15.8 257 167-547 201-457 (788)
15 KOG4237 Extracellular matrix p 99.5 8.7E-15 1.9E-19 138.0 0.7 254 132-404 64-355 (498)
16 KOG4658 Apoptotic ATPase [Sign 99.5 2E-14 4.3E-19 157.1 2.9 296 136-462 546-856 (889)
17 KOG0617 Ras suppressor protein 99.4 1.3E-15 2.7E-20 127.2 -5.6 155 164-353 30-184 (264)
18 PRK15387 E3 ubiquitin-protein 99.4 5.8E-13 1.3E-17 142.6 11.5 242 156-463 213-456 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 7.6E-13 1.6E-17 142.6 12.4 60 168-233 179-238 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 6.1E-13 1.3E-17 143.3 10.5 160 318-546 263-426 (754)
21 KOG0617 Ras suppressor protein 99.3 4.6E-14 9.9E-19 118.0 -6.3 146 158-337 47-193 (264)
22 KOG4237 Extracellular matrix p 99.2 4E-13 8.7E-18 126.9 -2.9 106 156-265 58-166 (498)
23 cd00116 LRR_RI Leucine-rich re 99.0 8.3E-11 1.8E-15 117.4 -0.0 90 159-248 15-118 (319)
24 cd00116 LRR_RI Leucine-rich re 98.9 7.8E-11 1.7E-15 117.6 -2.7 91 158-249 42-148 (319)
25 PF14580 LRR_9: Leucine-rich r 98.7 2.6E-09 5.6E-14 93.9 0.8 104 164-272 16-121 (175)
26 PF00931 NB-ARC: NB-ARC domain 98.7 7.1E-09 1.5E-13 101.6 1.7 54 14-67 232-285 (287)
27 KOG0532 Leucine-rich repeat (L 98.6 2.4E-09 5.3E-14 106.4 -2.1 84 158-244 112-195 (722)
28 KOG4341 F-box protein containi 98.6 7.6E-10 1.6E-14 106.0 -5.7 131 428-594 317-456 (483)
29 COG4886 Leucine-rich repeat (L 98.6 2.5E-08 5.4E-13 102.5 3.3 180 163-380 112-292 (394)
30 KOG1259 Nischarin, modulator o 98.5 1.1E-08 2.3E-13 93.9 -0.8 136 164-334 281-416 (490)
31 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.6E-12 97.5 4.8 164 158-360 130-295 (394)
32 KOG3207 Beta-tubulin folding c 98.5 1.3E-08 2.8E-13 98.3 -2.2 61 164-225 118-183 (505)
33 PF13855 LRR_8: Leucine rich r 98.5 1.8E-07 3.8E-12 67.4 4.2 58 167-225 1-60 (61)
34 PLN03150 hypothetical protein; 98.5 1.8E-07 4E-12 100.8 6.2 88 158-245 433-522 (623)
35 KOG2120 SCF ubiquitin ligase, 98.4 6.1E-09 1.3E-13 95.5 -5.2 158 168-327 186-348 (419)
36 KOG0532 Leucine-rich repeat (L 98.4 2.7E-08 5.9E-13 99.1 -1.3 178 158-375 89-270 (722)
37 KOG4341 F-box protein containi 98.4 3.2E-09 6.9E-14 101.8 -8.8 62 168-229 139-205 (483)
38 PF14580 LRR_9: Leucine-rich r 98.3 1.5E-07 3.3E-12 82.8 1.5 102 136-250 20-125 (175)
39 KOG3207 Beta-tubulin folding c 98.2 4.8E-07 1.1E-11 87.7 2.6 65 187-252 118-186 (505)
40 KOG2120 SCF ubiquitin ligase, 98.2 1.5E-08 3.2E-13 93.0 -7.8 157 191-378 186-351 (419)
41 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4.2E-11 56.6 3.5 40 167-207 1-40 (44)
42 PF13855 LRR_8: Leucine rich r 98.1 1.5E-06 3.2E-11 62.6 1.7 57 190-248 1-59 (61)
43 KOG1259 Nischarin, modulator o 98.0 1.3E-06 2.8E-11 80.6 0.8 110 285-405 300-409 (490)
44 PRK15386 type III secretion pr 98.0 3.6E-05 7.9E-10 76.4 10.5 63 313-381 48-110 (426)
45 PLN03150 hypothetical protein; 98.0 5.1E-06 1.1E-10 89.8 4.5 82 169-250 420-502 (623)
46 KOG1909 Ran GTPase-activating 98.0 2.3E-06 5E-11 80.8 1.6 89 163-252 26-134 (382)
47 PF12799 LRR_4: Leucine Rich r 98.0 7.1E-06 1.5E-10 53.9 2.9 41 190-232 1-41 (44)
48 KOG0531 Protein phosphatase 1, 97.9 2.5E-06 5.5E-11 87.9 0.5 84 163-250 91-174 (414)
49 PRK15386 type III secretion pr 97.9 7.7E-05 1.7E-09 74.1 10.0 69 163-236 48-116 (426)
50 KOG3665 ZYG-1-like serine/thre 97.8 9.2E-06 2E-10 87.6 1.5 157 166-325 121-283 (699)
51 KOG1859 Leucine-rich repeat pr 97.7 2.7E-06 5.9E-11 87.6 -3.6 110 158-273 178-288 (1096)
52 KOG2982 Uncharacterized conser 97.6 1.6E-05 3.5E-10 73.5 0.9 83 164-248 68-156 (418)
53 KOG0531 Protein phosphatase 1, 97.6 1.5E-05 3.2E-10 82.2 0.3 95 165-262 70-164 (414)
54 KOG1909 Ran GTPase-activating 97.4 1.4E-05 3E-10 75.7 -2.5 188 161-377 86-310 (382)
55 KOG1859 Leucine-rich repeat pr 97.2 9.5E-06 2.1E-10 83.7 -6.9 92 167-262 164-256 (1096)
56 KOG4579 Leucine-rich repeat (L 97.1 4.2E-05 9E-10 62.5 -2.5 81 163-245 49-130 (177)
57 KOG4579 Leucine-rich repeat (L 96.8 0.00016 3.4E-09 59.3 -1.4 86 137-233 55-141 (177)
58 COG5238 RNA1 Ran GTPase-activa 96.8 0.00022 4.8E-09 65.3 -0.9 193 163-376 26-253 (388)
59 KOG2982 Uncharacterized conser 96.7 0.00023 4.9E-09 66.1 -1.3 83 164-248 42-131 (418)
60 KOG1947 Leucine rich repeat pr 96.6 0.00019 4.1E-09 76.1 -3.6 117 288-408 184-308 (482)
61 KOG1644 U2-associated snRNP A' 96.4 0.0029 6.3E-08 55.7 3.3 82 163-246 60-148 (233)
62 PF00560 LRR_1: Leucine Rich R 96.3 0.0018 4E-08 35.2 1.2 19 169-187 2-20 (22)
63 KOG1644 U2-associated snRNP A' 96.3 0.0037 8.1E-08 55.0 3.2 83 167-252 42-127 (233)
64 KOG2739 Leucine-rich acidic nu 96.2 0.0025 5.4E-08 58.5 1.9 84 163-248 61-153 (260)
65 KOG2123 Uncharacterized conser 96.2 0.0004 8.7E-09 63.9 -3.3 79 166-248 18-98 (388)
66 KOG3665 ZYG-1-like serine/thre 96.1 0.003 6.6E-08 68.5 2.5 34 165-199 171-204 (699)
67 KOG1947 Leucine rich repeat pr 96.0 0.00075 1.6E-08 71.5 -2.7 35 431-465 401-440 (482)
68 KOG2739 Leucine-rich acidic nu 95.9 0.0028 6E-08 58.3 0.6 85 163-250 39-128 (260)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0059 1.3E-07 33.2 1.4 21 191-212 1-21 (22)
70 COG5238 RNA1 Ran GTPase-activa 94.8 0.0032 6.9E-08 58.0 -2.5 45 186-231 88-136 (388)
71 PF13504 LRR_7: Leucine rich r 94.7 0.022 4.8E-07 28.6 1.5 16 168-183 2-17 (17)
72 KOG2123 Uncharacterized conser 94.4 0.0025 5.4E-08 58.8 -4.1 79 188-271 17-95 (388)
73 PF13504 LRR_7: Leucine rich r 92.8 0.071 1.5E-06 26.8 1.3 16 191-207 2-17 (17)
74 KOG0473 Leucine-rich repeat pr 92.0 0.0072 1.6E-07 54.4 -4.9 83 163-247 38-120 (326)
75 smart00370 LRR Leucine-rich re 90.0 0.22 4.8E-06 28.2 1.6 19 167-185 2-20 (26)
76 smart00369 LRR_TYP Leucine-ric 90.0 0.22 4.8E-06 28.2 1.6 19 167-185 2-20 (26)
77 smart00369 LRR_TYP Leucine-ric 87.4 0.42 9.1E-06 27.0 1.6 19 214-233 2-20 (26)
78 smart00370 LRR Leucine-rich re 87.4 0.42 9.1E-06 27.0 1.6 19 214-233 2-20 (26)
79 PF13306 LRR_5: Leucine rich r 85.8 2.1 4.5E-05 35.6 5.9 90 288-385 8-99 (129)
80 KOG3864 Uncharacterized conser 84.8 0.19 4.2E-06 44.6 -1.0 79 167-245 101-183 (221)
81 KOG3864 Uncharacterized conser 83.7 0.18 3.9E-06 44.8 -1.7 40 364-408 150-189 (221)
82 smart00367 LRR_CC Leucine-rich 82.7 0.98 2.1E-05 25.5 1.7 15 535-549 2-16 (26)
83 KOG0473 Leucine-rich repeat pr 77.9 0.088 1.9E-06 47.7 -5.6 70 159-229 57-126 (326)
84 smart00364 LRR_BAC Leucine-ric 75.8 1.7 3.6E-05 24.6 1.1 17 168-184 3-19 (26)
85 PF13306 LRR_5: Leucine rich r 72.0 6.4 0.00014 32.6 4.4 77 163-244 8-87 (129)
86 smart00365 LRR_SD22 Leucine-ri 71.0 3.2 7E-05 23.5 1.5 15 167-181 2-16 (26)
87 PF13516 LRR_6: Leucine Rich r 66.3 3.5 7.6E-05 22.6 1.1 14 167-180 2-15 (24)
88 smart00368 LRR_RI Leucine rich 54.7 9.1 0.0002 22.0 1.5 14 167-180 2-15 (28)
89 PF05725 FNIP: FNIP Repeat; I 43.5 45 0.00098 21.6 3.6 32 535-567 12-43 (44)
90 PF09150 Carot_N: Orange carot 37.2 1.1E+02 0.0025 26.2 5.9 54 20-87 86-139 (159)
91 PF13730 HTH_36: Helix-turn-he 30.9 1.6E+02 0.0035 19.8 5.1 51 28-90 2-55 (55)
92 PF02082 Rrf2: Transcriptional 21.9 1.6E+02 0.0036 22.0 4.1 57 33-101 10-66 (83)
93 KOG3763 mRNA export factor TAP 21.5 35 0.00076 35.7 0.4 68 291-359 217-287 (585)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-43 Score=379.54 Aligned_cols=227 Identities=24% Similarity=0.391 Sum_probs=174.8
Q ss_pred cchhhhHHHHHHhhhhhhhhHHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCccc
Q 007616 12 YALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQ 91 (596)
Q Consensus 12 ~~~~~~i~~~L~lSY~~L~~~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~ 91 (596)
.++.+.|+.+|++|||+||+++|.||||||+|||||+|++++||.|||||||+++...++.+++.|+.|+++|++++|++
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 46688999999999999998899999999999999999999999999999999987678999999999999999999999
Q ss_pred eecC--CCCeEEEcchHHHHHHHhhc-----cceEEeccc--cCCCCccccCCceeEEEEecccccccccccccccCccc
Q 007616 92 QSKI--DASRFLMHDLIHDLACWASG-----EICWCMEST--WDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPND 162 (596)
Q Consensus 92 ~~~~--~~~~~~mhd~i~~l~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~ 162 (596)
..+. ....|+|||+|||||.|+++ .+..++..+ .........+..+|+++++.+.... ++.+
T Consensus 471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---------~~~~ 541 (889)
T KOG4658|consen 471 EERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---------IAGS 541 (889)
T ss_pred hcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---------ccCC
Confidence 8762 45889999999999999999 444443322 1111222334678899988876653 3333
Q ss_pred ccccCCCcEEeecCCC--cccccc-ccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcc
Q 007616 163 IAELKHLRYLDFSHTA--IEVLSE-SVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTS 239 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~--i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~ 239 (596)
. ..+.|++|-+.+|. +..++. .|..++.|++|||++|..+..+|..|++|.+||+|+++++. +..+|.++++|.+
T Consensus 542 ~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 542 S-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKK 619 (889)
T ss_pred C-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHh
Confidence 2 23357777777774 455543 35667777777777777777777777777777777777777 7777777777777
Q ss_pred cCCCCcEEec
Q 007616 240 LRTLAKFVVG 249 (596)
Q Consensus 240 L~~L~~~~~~ 249 (596)
|.+|++....
T Consensus 620 L~~Lnl~~~~ 629 (889)
T KOG4658|consen 620 LIYLNLEVTG 629 (889)
T ss_pred hheecccccc
Confidence 7777765444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2e-35 Score=337.29 Aligned_cols=445 Identities=20% Similarity=0.218 Sum_probs=249.5
Q ss_pred hhhHHHHHHhhhhhhhh-HHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCcccee
Q 007616 15 FKGFRGALGVSYYCLLS-YVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQS 93 (596)
Q Consensus 15 ~~~i~~~L~lSY~~L~~-~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~~~ 93 (596)
.++|+++|++|||+|++ ..|.||+||||||++..+ +.+..|.+.+.+.. +..++.|+++||++..
T Consensus 419 ~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 419 DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR 484 (1153)
T ss_pred cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc
Confidence 46899999999999987 599999999999998744 34777888765432 1237899999999875
Q ss_pred cCCCCeEEEcchHHHHHHHhhccceEEec---cccCCCC------ccccCCceeEEEEeccc----------cccccccc
Q 007616 94 KIDASRFLMHDLIHDLACWASGEICWCME---STWDGNN------ERRFSRNLRHLSYLTSR----------FDGIKRFE 154 (596)
Q Consensus 94 ~~~~~~~~mhd~i~~l~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~l~~~~~~----------~~~~~~~~ 154 (596)
.+.++|||++|+||+++++++....+ .-|+... .......++++.+.... +.++.++.
T Consensus 485 ---~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~ 561 (1153)
T PLN03210 485 ---EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLL 561 (1153)
T ss_pred ---CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcccc
Confidence 36899999999999999876531000 0011100 01111233443332111 11111111
Q ss_pred cc--------------ccCcccccccC-CCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCcccee
Q 007616 155 GL--------------HELPNDIAELK-HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHL 219 (596)
Q Consensus 155 ~l--------------~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 219 (596)
.+ ..+|..+..++ +||+|++.++.+..+|..+ ...+|+.|++++| .+..+|.++..+++|+.|
T Consensus 562 ~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L 639 (1153)
T PLN03210 562 FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNI 639 (1153)
T ss_pred EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEE
Confidence 00 02444454443 4666666666666666655 3566666666666 566666666666666666
Q ss_pred ecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccc
Q 007616 220 KDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSP 299 (596)
Q Consensus 220 ~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 299 (596)
+++++..++.+|. ++.+++|++|++.++.... .....+.++.+|+ .+.+.++........ .+ .+++|+.|.+
T Consensus 640 ~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~-~L~L~~c~~L~~Lp~----~i-~l~sL~~L~L 711 (1153)
T PLN03210 640 DLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV-ELPSSIQYLNKLE-DLDMSRCENLEILPT----GI-NLKSLYRLNL 711 (1153)
T ss_pred ECCCCCCcCcCCc-cccCCcccEEEecCCCCcc-ccchhhhccCCCC-EEeCCCCCCcCccCC----cC-CCCCCCEEeC
Confidence 6666655566653 5666666666654432211 1112233344444 455544433322211 11 3555666666
Q ss_pred cccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCC------CCCC--CCCCCCccceee
Q 007616 300 KWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQC------TTLP--SVGHLPSLKNLV 371 (596)
Q Consensus 300 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~l~--~l~~l~~L~~L~ 371 (596)
++|.... ..+ ....+|+.|+++++....+|..+ .+++|+.|.+.++... ..++ .....++|+.|+
T Consensus 712 sgc~~L~-~~p---~~~~nL~~L~L~~n~i~~lP~~~---~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 712 SGCSRLK-SFP---DISTNISWLDLDETAIEEFPSNL---RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred CCCCCcc-ccc---cccCCcCeeecCCCccccccccc---cccccccccccccchhhccccccccchhhhhccccchhee
Confidence 5553211 111 11345666666666666666543 2456666666554311 0111 011235666666
Q ss_pred ccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC--CCCCCCEEEEeeccChhccCC
Q 007616 372 IKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ--RFSSLERIVITSCEQLLVSYT 449 (596)
Q Consensus 372 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~--~l~~L~~L~l~~c~~l~~~~~ 449 (596)
+++|..+..+|..+.. +++|+.|++++|.+++. +|. .+++|+.|++++|..+.....
T Consensus 785 Ls~n~~l~~lP~si~~------L~~L~~L~Ls~C~~L~~---------------LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 785 LSDIPSLVELPSSIQN------LHKLEHLEIENCINLET---------------LPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred CCCCCCccccChhhhC------CCCCCEEECCCCCCcCe---------------eCCCCCccccCEEECCCCCccccccc
Confidence 6666666555554433 56666666655544433 221 356677777777766533333
Q ss_pred CCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCC
Q 007616 450 ALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLES 527 (596)
Q Consensus 450 ~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~ 527 (596)
..++|++|+++++... .+|.++ +++|+.| ++.+|+. ++.+|.
T Consensus 844 ~~~nL~~L~Ls~n~i~----------------------~iP~si~~l~~L~~L-~L~~C~~----L~~l~~--------- 887 (1153)
T PLN03210 844 ISTNISDLNLSRTGIE----------------------EVPWWIEKFSNLSFL-DMNGCNN----LQRVSL--------- 887 (1153)
T ss_pred cccccCEeECCCCCCc----------------------cChHHHhcCCCCCEE-ECCCCCC----cCccCc---------
Confidence 3456666666665411 234444 6777777 7777777 666655
Q ss_pred CCCCCCCCCCCeeecCCCCCCccCC
Q 007616 528 LSFVGNLTSLERLELPRCPVLRSFP 552 (596)
Q Consensus 528 l~~~~~l~~L~~L~l~~c~~l~~lp 552 (596)
.+..+++|+.|++++|++++.++
T Consensus 888 --~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 888 --NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred --ccccccCCCeeecCCCccccccc
Confidence 35566777777777777776553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1e-27 Score=274.38 Aligned_cols=384 Identities=20% Similarity=0.216 Sum_probs=228.7
Q ss_pred cCcccccccCCCcEEeecCCCcc-ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
.+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|...+.+|..+++
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 56777777888888888888765 66777788888888888887555567777888888888888887755567777788
Q ss_pred CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616 237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH 316 (596)
Q Consensus 237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 316 (596)
+++|++|++.++.... .....+..+++|+ .+.+.+.. ..+..+..+..+++|+.|+++++. .....+..+..+
T Consensus 235 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l 307 (968)
T PLN00113 235 LTSLNHLDLVYNNLTG-PIPSSLGNLKNLQ-YLFLYQNK----LSGPIPPSIFSLQKLISLDLSDNS-LSGEIPELVIQL 307 (968)
T ss_pred CCCCCEEECcCceecc-ccChhHhCCCCCC-EEECcCCe----eeccCchhHhhccCcCEEECcCCe-eccCCChhHcCC
Confidence 8888888776665422 2223344445554 55554422 112233345667778888887664 333445556667
Q ss_pred CCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCC
Q 007616 317 YGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPF 394 (596)
Q Consensus 317 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 394 (596)
++|+.|++++|... ..|.++. .+++|+.|++++|...+.+| .++.+++|+.|++++|.....++..++. +
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------~ 379 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS------S 379 (968)
T ss_pred CCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC------c
Confidence 78888888877643 4555555 67788888888877666666 5677788888888877655555544433 4
Q ss_pred CCcceeecccCc----------cccccceeEEecCCCCCCCCCC---CCCCCCEEEEeeccC---hhccCCCCCCcceEE
Q 007616 395 PSLETLCFEDMQ----------EWEERIGLSIVRCPKLKGRLPQ---RFSSLERIVITSCEQ---LLVSYTALPPLCELE 458 (596)
Q Consensus 395 ~~L~~L~l~~~~----------~l~~~~~l~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~ 458 (596)
++|+.|++.+.. .+..+..+.+.+| ++.+.+|. .+++|+.|++++|.- .+..+..+++|+.|+
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 556666555421 1112223334332 23333442 455666666665541 123334566666666
Q ss_pred ecCCccc-----------ceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccC-CCCCC
Q 007616 459 IDGFSEL-----------FLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEG-GEFPQ 524 (596)
Q Consensus 459 l~~c~~l-----------l~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~-~~~~~ 524 (596)
+++|... ++.+++++|.- .+ .+|..+ +++|+.| ++++|.. .+.+|.. +.+++
T Consensus 459 L~~n~~~~~~p~~~~~~~L~~L~ls~n~l-~~--------~~~~~~~~l~~L~~L-~Ls~N~l----~~~~p~~~~~l~~ 524 (968)
T PLN00113 459 LARNKFFGGLPDSFGSKRLENLDLSRNQF-SG--------AVPRKLGSLSELMQL-KLSENKL----SGEIPDELSSCKK 524 (968)
T ss_pred CcCceeeeecCcccccccceEEECcCCcc-CC--------ccChhhhhhhccCEE-ECcCCcc----eeeCChHHcCccC
Confidence 6666532 23344443321 11 112222 4444445 5555443 2233322 22222
Q ss_pred CCCCC------------CCCCCCCCCeeecCCCCCCccCCCC-CCCCCccEEEEecCchH
Q 007616 525 LESLS------------FVGNLTSLERLELPRCPVLRSFPEN-VLPPSLVYLSIYLCPYL 571 (596)
Q Consensus 525 L~~l~------------~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~C~~L 571 (596)
|+.+. .+..+++|+.|++++|+....+|.. ..+++|+.|++++|+-.
T Consensus 525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 22221 4667889999999998776677764 22678999999988643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.5e-26 Score=264.72 Aligned_cols=254 Identities=20% Similarity=0.195 Sum_probs=153.2
Q ss_pred cCCCCccccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcc-ccccccc-cCCcCcEEEcccccc
Q 007616 125 WDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-VLSESVS-TLYNLQTLILEYCYR 202 (596)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~-~l~~L~~L~L~~~~~ 202 (596)
|.|+.+.. ..+++.+.+..+...+ .+|..+..+++|++|++++|.+. .+|..+. .+.+|++|++++|..
T Consensus 60 w~gv~c~~-~~~v~~L~L~~~~i~~--------~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l 130 (968)
T PLN00113 60 WQGITCNN-SSRVVSIDLSGKNISG--------KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130 (968)
T ss_pred CcceecCC-CCcEEEEEecCCCccc--------cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc
Confidence 66655543 3467778777665443 45667777888888888888776 6776554 777888888877744
Q ss_pred ccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhh
Q 007616 203 LKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAED 282 (596)
Q Consensus 203 ~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~ 282 (596)
.+.+|. +.+++|++|++++|.....+|..++++++|++|++.++.... .....+.++++|+ .+.+.+... ..
T Consensus 131 ~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~-~L~L~~n~l----~~ 202 (968)
T PLN00113 131 TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLE-FLTLASNQL----VG 202 (968)
T ss_pred ccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCC-eeeccCCCC----cC
Confidence 445553 456777777777777445667677777777777776554322 1122334444444 455544221 12
Q ss_pred HHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-C
Q 007616 283 AKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-S 360 (596)
Q Consensus 283 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~ 360 (596)
..+..+..+++|+.|+++++. .....+..+..+++|+.|++++|... .+|..+. .+++|+.|++++|...+.+| .
T Consensus 203 ~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 203 QIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred cCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCceeccccChhHh--CCCCCCEEECcCCeeeccCchh
Confidence 223345666777777776654 23344455566677777777776543 4555555 56677777777766555555 4
Q ss_pred CCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616 361 VGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED 404 (596)
Q Consensus 361 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 404 (596)
++.+++|+.|++++|.....++..+.. +++|+.|++.+
T Consensus 280 l~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~l~~ 317 (968)
T PLN00113 280 IFSLQKLISLDLSDNSLSGEIPELVIQ------LQNLEILHLFS 317 (968)
T ss_pred HhhccCcCEEECcCCeeccCCChhHcC------CCCCcEEECCC
Confidence 566677777777766544444433322 56666666654
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=7e-21 Score=218.23 Aligned_cols=336 Identities=20% Similarity=0.245 Sum_probs=223.7
Q ss_pred cccccccCCCcEEeecCCCc------c-ccccccccCC-cCcEEEccccccccccCCcccCCCccceeecCCCCcccccc
Q 007616 160 PNDIAELKHLRYLDFSHTAI------E-VLSESVSTLY-NLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMP 231 (596)
Q Consensus 160 p~~~~~l~~L~~L~L~~~~i------~-~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp 231 (596)
+..|..|++|++|.+..+.. . .+|..+..++ +|+.|.+.++ .++.+|..+ ...+|+.|++.++. +..+|
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LEKLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-ccccc
Confidence 35578999999999976532 2 5677777664 6999999998 889999887 57899999999998 88999
Q ss_pred ccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhh
Q 007616 232 LRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE 311 (596)
Q Consensus 232 ~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 311 (596)
.++..+++|+.|++.++.. +..++. +..+++|+.|++..|.. ....+.
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~-----l~~ip~--------------------------ls~l~~Le~L~L~~c~~-L~~lp~ 675 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKN-----LKEIPD--------------------------LSMATNLETLKLSDCSS-LVELPS 675 (1153)
T ss_pred cccccCCCCCEEECCCCCC-----cCcCCc--------------------------cccCCcccEEEecCCCC-ccccch
Confidence 9999999999988643321 111111 23345666666665542 233445
Q ss_pred ccCCCCCccEEEEeccC-CCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCC
Q 007616 312 MLKPHYGLKELKVRGYG-GTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC 390 (596)
Q Consensus 312 ~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 390 (596)
.+..+++|+.|++++|. ...+|..+ .+++|+.|++++|..++.+|.. .++|+.|++.++. ++.+|...
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP~~~----- 744 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFPSNL----- 744 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-cccccccc-----
Confidence 56667788888888764 55666544 4788999999998877777743 4678888888764 55554322
Q ss_pred CCCCCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCCcccce
Q 007616 391 SEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGFSELFL 467 (596)
Q Consensus 391 ~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c~~ll~ 467 (596)
.+++|+.|.+.++....-+. ....+........++|+.|++++|+. ++..+.++++|+.|++++|..+.
T Consensus 745 --~l~~L~~L~l~~~~~~~l~~-----~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~- 816 (1153)
T PLN03210 745 --RLENLDELILCEMKSEKLWE-----RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE- 816 (1153)
T ss_pred --cccccccccccccchhhccc-----cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-
Confidence 26778877777644221110 00001100112346788888887764 35666778888888887776431
Q ss_pred eeEecccccccccCCccccccccccc-chhhhccccccccccccccceecccCCC--------CCCCCCCC-CCCCCCCC
Q 007616 468 ILQIQGWRSRAEILPQEIRIPNQESL-LDGLQKLSHITRISMVGSLLVYIAEGGE--------FPQLESLS-FVGNLTSL 537 (596)
Q Consensus 468 ~l~~~~~~~l~~~~p~l~~l~~p~~~-l~~L~~L~~l~~c~~~~~~l~~~~~~~~--------~~~L~~l~-~~~~l~~L 537 (596)
.+|... +++|+.| ++++|.. +..+|.... .+.++.+| ++..+++|
T Consensus 817 --------------------~LP~~~~L~sL~~L-~Ls~c~~----L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L 871 (1153)
T PLN03210 817 --------------------TLPTGINLESLESL-DLSGCSR----LRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL 871 (1153)
T ss_pred --------------------eeCCCCCccccCEE-ECCCCCc----cccccccccccCEeECCCCCCccChHHHhcCCCC
Confidence 122222 5555555 5665555 444443210 22334444 67889999
Q ss_pred CeeecCCCCCCccCCCCC-CCCCccEEEEecCchHHHh
Q 007616 538 ERLELPRCPVLRSFPENV-LPPSLVYLSIYLCPYLEER 574 (596)
Q Consensus 538 ~~L~l~~c~~l~~lp~~~-~~~~L~~L~i~~C~~L~~~ 574 (596)
+.|++.+|++++.+|... .+++|+.+++++|++|++.
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 999999999999998743 3789999999999999754
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=7.7e-22 Score=193.44 Aligned_cols=361 Identities=18% Similarity=0.165 Sum_probs=246.0
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccC-Cccc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLF-PDIG 211 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i~ 211 (596)
.|...+.|.+.++.... .-+..|.++++|+.+++..|.++.+|...+...+|+.|+|.+| .+.++- +.+.
T Consensus 76 lp~~t~~LdlsnNkl~~--------id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~ 146 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSH--------IDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELS 146 (873)
T ss_pred Cccceeeeecccccccc--------CcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHH
Confidence 34455556665554443 1234567888888888888888888887777778888888888 665554 3477
Q ss_pred CCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCC
Q 007616 212 NLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNG 290 (596)
Q Consensus 212 ~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~ 290 (596)
.++.|+.||++.|. +..+|.. +..-.++++|++.++.+++. ....+..+..|. .+.+.. +.........+..
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~~lnsL~-tlkLsr----NrittLp~r~Fk~ 219 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTL-ETGHFDSLNSLL-TLKLSR----NRITTLPQRSFKR 219 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccccccc-ccccccccchhe-eeeccc----CcccccCHHHhhh
Confidence 78888888888887 7777754 66667888888877766542 112233333332 344433 2223333445777
Q ss_pred ccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccce
Q 007616 291 KKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKN 369 (596)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~ 369 (596)
+++|+.|++..+. +.....-.+..+++|+.|.+..|.+..+.+.+.. .+.++++|+|+.|+....-. ++-++.+|+.
T Consensus 220 L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 220 LPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred cchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCccee-eecccceeecccchhhhhhcccccccchhhh
Confidence 8999999998776 3333344567788999999999988777665443 57899999999988432222 6788999999
Q ss_pred eeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC----CCCCCCEEEEeecc--C
Q 007616 370 LVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ----RFSSLERIVITSCE--Q 443 (596)
Q Consensus 370 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~----~l~~L~~L~l~~c~--~ 443 (596)
|++++| .++.+..+.+. ..++|++|+|++ ++++ .+++ .+..|++|.++.+. .
T Consensus 298 L~lS~N-aI~rih~d~Ws-----ftqkL~~LdLs~---------------N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 298 LDLSYN-AIQRIHIDSWS-----FTQKLKELDLSS---------------NRIT-RLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred hccchh-hhheeecchhh-----hcccceeEeccc---------------cccc-cCChhHHHHHHHhhhhcccccchHH
Confidence 999985 46666544433 278999999987 4444 4442 46888999998875 2
Q ss_pred h-hccCCCCCCcceEEecCCcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCC
Q 007616 444 L-LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEF 522 (596)
Q Consensus 444 l-~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~ 522 (596)
+ ...|..+.+|++|+++.|. ++.|-+-. ..+-.-+++|++| .+.++. +++||..
T Consensus 356 l~e~af~~lssL~~LdLr~N~-------ls~~IEDa---------a~~f~gl~~LrkL-~l~gNq-----lk~I~kr--- 410 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNE-------LSWCIEDA---------AVAFNGLPSLRKL-RLTGNQ-----LKSIPKR--- 410 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCe-------EEEEEecc---------hhhhccchhhhhe-eecCce-----eeecchh---
Confidence 2 4567789999999999986 33332211 0111117888999 888887 7777764
Q ss_pred CCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCC-CCCccEEEEe
Q 007616 523 PQLESLSFVGNLTSLERLELPRCPVLRSFPENVL-PPSLVYLSIY 566 (596)
Q Consensus 523 ~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~~L~~L~i~ 566 (596)
.+.+|.+|++|++.++ -+.++....+ +-.|++|.+.
T Consensus 411 -------Afsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 411 -------AFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred -------hhccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence 6789999999999994 5777766554 3467766654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=9.8e-22 Score=192.71 Aligned_cols=329 Identities=20% Similarity=0.198 Sum_probs=217.0
Q ss_pred CCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccc-cccCCcccCCCCc
Q 007616 168 HLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAK 245 (596)
Q Consensus 168 ~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~ 245 (596)
.-+.||+++|++..+ +..|.++++|+.+++.+| .++.+|...+...+|+.|++.+|. +..+-. ++.-++.|+.||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhh
Confidence 467799999999966 567899999999999999 999999977777889999999998 666543 3778888999987
Q ss_pred EEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEe
Q 007616 246 FVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVR 325 (596)
Q Consensus 246 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 325 (596)
+.+.+.. ++ ...+....++++|.++.+.. ..-....+..+.+|..|.|+
T Consensus 157 SrN~is~------i~------------------------~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 157 SRNLISE------IP------------------------KPSFPAKVNIKKLNLASNRI-TTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred hhchhhc------cc------------------------CCCCCCCCCceEEeeccccc-cccccccccccchheeeecc
Confidence 6543311 11 01244456778888877763 23333445566788999999
Q ss_pred ccCCCCCCCCCCCCCCCCccEEEEecCCCCCCC--CCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecc
Q 007616 326 GYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTL--PSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFE 403 (596)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 403 (596)
.|.++.+|..... .+++|+.|+|..|. +..+ -.+.++++|+.|.+..|.--+--...|++ +.+++.|+|.
T Consensus 206 rNrittLp~r~Fk-~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~------l~kme~l~L~ 277 (873)
T KOG4194|consen 206 RNRITTLPQRSFK-RLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG------LEKMEHLNLE 277 (873)
T ss_pred cCcccccCHHHhh-hcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceee------ecccceeecc
Confidence 9999888876552 58899999998887 3333 25778899999999886533333344444 7888888877
Q ss_pred cCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeecc--Ch-hccCCCCCCcceEEecCCcccceeeEeccccccccc
Q 007616 404 DMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCE--QL-LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEI 480 (596)
Q Consensus 404 ~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~--~l-~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~ 480 (596)
.. ++..+. +| .--++++|+.|+++++. ++ ++.+...++|++|++++|..- .+.-... ..
T Consensus 278 ~N-~l~~vn----------~g-~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~--~l~~~sf----~~ 339 (873)
T KOG4194|consen 278 TN-RLQAVN----------EG-WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT--RLDEGSF----RV 339 (873)
T ss_pred cc-hhhhhh----------cc-cccccchhhhhccchhhhheeecchhhhcccceeEeccccccc--cCChhHH----HH
Confidence 51 111110 01 11247778888887764 22 456666778888888777522 1000000 00
Q ss_pred CCccccc--------cccccc---chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCc
Q 007616 481 LPQEIRI--------PNQESL---LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLR 549 (596)
Q Consensus 481 ~p~l~~l--------~~p~~~---l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~ 549 (596)
+.+|+.+ ++-++. +.+|++| +++++.. -..+.+.. . .+..+++|++|.+.+ ++++
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L-dLr~N~l----s~~IEDaa-------~-~f~gl~~LrkL~l~g-Nqlk 405 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKL-DLRSNEL----SWCIEDAA-------V-AFNGLPSLRKLRLTG-NQLK 405 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhh-cCcCCeE----EEEEecch-------h-hhccchhhhheeecC-ceee
Confidence 0011111 112222 6666777 6666653 22222210 0 456799999999999 7899
Q ss_pred cCCCCCC--CCCccEEEEecCc
Q 007616 550 SFPENVL--PPSLVYLSIYLCP 569 (596)
Q Consensus 550 ~lp~~~~--~~~L~~L~i~~C~ 569 (596)
++|...+ +++|+.|++.+.+
T Consensus 406 ~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ecchhhhccCcccceecCCCCc
Confidence 9998655 7899999998875
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.5e-23 Score=205.12 Aligned_cols=321 Identities=21% Similarity=0.251 Sum_probs=207.8
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccc--cccCCcccCCCccceeecCCCCcccccccccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRL--KKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIG 235 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~--~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~ 235 (596)
.+|+.++.+.+|+.|.+++|++..+-..++.|+.||.++++.| .+ ..+|..|-+|..|..||++.|. ++++|.++.
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE 123 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLE 123 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhh-hhhcchhhh
Confidence 6777777777777777777777777667777777777777777 33 3677788888888888888888 888888888
Q ss_pred CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCC
Q 007616 236 KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP 315 (596)
Q Consensus 236 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 315 (596)
..+++-.|+++++.+.+... .-+-+|+.|- .+.+++ +.-+.++..+..+.+|+.|.++.++ .....+..+.+
T Consensus 124 ~AKn~iVLNLS~N~IetIPn-~lfinLtDLL-fLDLS~-----NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPs 195 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPN-SLFINLTDLL-FLDLSN-----NRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPS 195 (1255)
T ss_pred hhcCcEEEEcccCccccCCc-hHHHhhHhHh-hhcccc-----chhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCcc
Confidence 88888788777666544211 1122222222 222222 1223333445666777777777765 34445556666
Q ss_pred CCCccEEEEeccC--CCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616 316 HYGLKELKVRGYG--GTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE 392 (596)
Q Consensus 316 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 392 (596)
+.+|+.|++++.+ ...+|..+. .+.+|..++++.|. +..+| .+-.+++|+.|+|++|. ++.+.... .
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld--~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~------~ 265 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLD--DLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTE------G 265 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchh--hhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccH------H
Confidence 7777777777765 345666665 67777777777765 44444 46677778888887753 33332211 1
Q ss_pred CCCCcceeecccCccccccceeEEecCCCCCCCCCC---CCCCCCEEEEeecc----ChhccCCCCCCcceEEecCCccc
Q 007616 393 PFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ---RFSSLERIVITSCE----QLLVSYTALPPLCELEIDGFSEL 465 (596)
Q Consensus 393 ~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~---~l~~L~~L~l~~c~----~l~~~~~~l~~L~~L~l~~c~~l 465 (596)
...+|++|.++. +.|+ .+|. .+++|+.|.+.++. .+|++++.+.+|+.+...+|..-
T Consensus 266 ~W~~lEtLNlSr---------------NQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 266 EWENLETLNLSR---------------NQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred HHhhhhhhcccc---------------chhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 145667666665 4455 5563 45666666665543 34666667777777777666521
Q ss_pred ceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecC
Q 007616 466 FLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELP 543 (596)
Q Consensus 466 l~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~ 543 (596)
-+|+++ +..|+.| .+..++ +.++|+ .+.-++.|+.|+++
T Consensus 330 ----------------------lVPEglcRC~kL~kL-~L~~Nr-----LiTLPe-----------aIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 330 ----------------------LVPEGLCRCVKLQKL-KLDHNR-----LITLPE-----------AIHLLPDLKVLDLR 370 (1255)
T ss_pred ----------------------cCchhhhhhHHHHHh-cccccc-----eeechh-----------hhhhcCCcceeecc
Confidence 356776 8888888 777666 556666 67778888888888
Q ss_pred CCCCCccCCC
Q 007616 544 RCPVLRSFPE 553 (596)
Q Consensus 544 ~c~~l~~lp~ 553 (596)
+++++..=|.
T Consensus 371 eNpnLVMPPK 380 (1255)
T KOG0444|consen 371 ENPNLVMPPK 380 (1255)
T ss_pred CCcCccCCCC
Confidence 8888876554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.8e-22 Score=196.90 Aligned_cols=273 Identities=20% Similarity=0.232 Sum_probs=178.5
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCccccccccccC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
.+|..+-++..|.+|||++|++.+.|..+..-+++-+|+|++| .+..+|.. +-+|+.|-.||+++|. +..+|+.+..
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRR 171 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccch-hhhcCHHHHH
Confidence 5788888888888888888888888888888888888888888 88888866 5688888888888888 8888888888
Q ss_pred CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616 237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH 316 (596)
Q Consensus 237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 316 (596)
|..|++|.++++.... ..++.+ ..++.|+.|.++....+...++..+..+
T Consensus 172 L~~LqtL~Ls~NPL~h-fQLrQL-----------------------------PsmtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNH-FQLRQL-----------------------------PSMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred HhhhhhhhcCCChhhH-HHHhcC-----------------------------ccchhhhhhhcccccchhhcCCCchhhh
Confidence 8888888876554311 112222 2334444444544444444455555555
Q ss_pred CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCC
Q 007616 317 YGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPS 396 (596)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 396 (596)
.+|..++++.|....+|..+- .+++|+.|++++|...+---..+.-.+|+.|+++.| .+..+|...+. +++
T Consensus 222 ~NL~dvDlS~N~Lp~vPecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcK------L~k 292 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCK------LTK 292 (1255)
T ss_pred hhhhhccccccCCCcchHHHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhh------hHH
Confidence 666666666666666665554 556666666666652221113344456666666663 35555555544 566
Q ss_pred cceeecccCccccccceeEEecCCCCCCCCCCC---CCCCCEEEEeecc--ChhccCCCCCCcceEEecCCcccceeeEe
Q 007616 397 LETLCFEDMQEWEERIGLSIVRCPKLKGRLPQR---FSSLERIVITSCE--QLLVSYTALPPLCELEIDGFSELFLILQI 471 (596)
Q Consensus 397 L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~---l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~~ll~~l~~ 471 (596)
|+.|.+.+. +|.+ . -+|.+ +..|+.+...++. -.|.++..++.|+.|.++.|..+
T Consensus 293 L~kLy~n~N-------kL~F------e-GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi------ 352 (1255)
T KOG0444|consen 293 LTKLYANNN-------KLTF------E-GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI------ 352 (1255)
T ss_pred HHHHHhccC-------cccc------c-CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee------
Confidence 665555441 1111 1 24433 3444444444433 23778889999999999887744
Q ss_pred cccccccccCCccccccccccc--chhhhcccccccccc
Q 007616 472 QGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISM 508 (596)
Q Consensus 472 ~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~ 508 (596)
.+|+.+ ++.|+.| ++..++.
T Consensus 353 ----------------TLPeaIHlL~~l~vL-DlreNpn 374 (1255)
T KOG0444|consen 353 ----------------TLPEAIHLLPDLKVL-DLRENPN 374 (1255)
T ss_pred ----------------echhhhhhcCCccee-eccCCcC
Confidence 578877 9999999 9999998
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=7.1e-22 Score=185.44 Aligned_cols=202 Identities=26% Similarity=0.282 Sum_probs=106.0
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l 237 (596)
++|+.++.+..|+.|+.++|.+.++|++++.+..|+.|+..+| .+..+|++++++.+|..+++.+|. +..+|+..-++
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m 182 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAM 182 (565)
T ss_pred hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHH
Confidence 4444444444555555555554455544555555555544444 444444445555555555555444 44444443334
Q ss_pred cccCCCCcEEeccCC-CCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616 238 TSLRTLAKFVVGKGN-CSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH 316 (596)
Q Consensus 238 ~~L~~L~~~~~~~~~-~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 316 (596)
+.|++|+...+.... +..+..+..+..|. ++-..+..+ ..+.+|..|.++++..+. ...-..+....+
T Consensus 183 ~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly--L~~Nki~~l--------Pef~gcs~L~Elh~g~N~-i~~lpae~~~~L 251 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLETLPPELGGLESLELLY--LRRNKIRFL--------PEFPGCSLLKELHVGENQ-IEMLPAEHLKHL 251 (565)
T ss_pred HHHHhcccchhhhhcCChhhcchhhhHHHH--hhhcccccC--------CCCCccHHHHHHHhcccH-HHhhHHHHhccc
Confidence 445544433222211 11111222211110 000001111 135566666666665543 222222334467
Q ss_pred CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616 317 YGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 376 (596)
+++..||+..|....+|..+. .+.+|.+|++++|. ++.+| .+|++ .|+.|.+.+++
T Consensus 252 ~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccceeeeccccccccCchHHH--HhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 888888888888888888776 67788888888877 44455 78888 88888888865
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=2.9e-20 Score=191.99 Aligned_cols=358 Identities=25% Similarity=0.294 Sum_probs=207.9
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l 237 (596)
..|..+..+.+|+.|+++.|.|...|.+++++.+|++|+|.+| .+..+|.++..+++|++|++++|. ...+|.-+..+
T Consensus 59 ~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~l 136 (1081)
T KOG0618|consen 59 SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVL 136 (1081)
T ss_pred cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhc-cCCCchhHHhh
Confidence 4677778888888888888888888888888888888888888 788888888888888888888887 67777766666
Q ss_pred cccCCCCcEEeccCC------------------CCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccc
Q 007616 238 TSLRTLAKFVVGKGN------------------CSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSP 299 (596)
Q Consensus 238 ~~L~~L~~~~~~~~~------------------~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 299 (596)
+.+..+...++.... ...+.+...+.. .+.+.. +.. ....+..+.+|+.+..
T Consensus 137 t~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~---~ldLr~----N~~---~~~dls~~~~l~~l~c 206 (1081)
T KOG0618|consen 137 TAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH---QLDLRY----NEM---EVLDLSNLANLEVLHC 206 (1081)
T ss_pred hHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe---eeeccc----chh---hhhhhhhccchhhhhh
Confidence 666666554441111 000111111111 011111 000 0122333333333332
Q ss_pred --------------------cccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC
Q 007616 300 --------------------KWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP 359 (596)
Q Consensus 300 --------------------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~ 359 (596)
+.+... ....-..+.+|+.++++.+....+|.|+. .+.+|+.++..+|.. ..+|
T Consensus 207 ~rn~ls~l~~~g~~l~~L~a~~n~l~---~~~~~p~p~nl~~~dis~n~l~~lp~wi~--~~~nle~l~~n~N~l-~~lp 280 (1081)
T KOG0618|consen 207 ERNQLSELEISGPSLTALYADHNPLT---TLDVHPVPLNLQYLDISHNNLSNLPEWIG--ACANLEALNANHNRL-VALP 280 (1081)
T ss_pred hhcccceEEecCcchheeeeccCcce---eeccccccccceeeecchhhhhcchHHHH--hcccceEecccchhH-HhhH
Confidence 222211 11112235788999999999999999988 788999999888875 4444
Q ss_pred -CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccc---------eeEE--ecCCCCCCCCC
Q 007616 360 -SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERI---------GLSI--VRCPKLKGRLP 427 (596)
Q Consensus 360 -~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---------~l~l--~~c~~L~~~~p 427 (596)
.+....+|+.|.+..| .+++++....+ +.+|+.|+|... ++.++. .+++ ..|.++. ..|
T Consensus 281 ~ri~~~~~L~~l~~~~n-el~yip~~le~------~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp 351 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYN-ELEYIPPFLEG------LKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLS-TLP 351 (1081)
T ss_pred HHHhhhhhHHHHHhhhh-hhhhCCCcccc------cceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcccc-ccc
Confidence 4556667777777664 46666654433 677777777651 111111 0000 0112222 122
Q ss_pred ----CCCCCCCEEEEeeccCh---hccCCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc---chhh
Q 007616 428 ----QRFSSLERIVITSCEQL---LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL---LDGL 497 (596)
Q Consensus 428 ----~~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~---l~~L 497 (596)
..++.|+.|.+.++.-- ...+.++++||.|++++|..- ++|.+- +..|
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~----------------------~fpas~~~kle~L 409 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN----------------------SFPASKLRKLEEL 409 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc----------------------cCCHHHHhchHHh
Confidence 13344555555444311 233445666777777666411 233333 4455
Q ss_pred hccccccccccccccceecccCC-C----------CCCCCCCCCCCCCCCCCeeecCCCCCCccCCCC-CCC-CCccEEE
Q 007616 498 QKLSHITRISMVGSLLVYIAEGG-E----------FPQLESLSFVGNLTSLERLELPRCPVLRSFPEN-VLP-PSLVYLS 564 (596)
Q Consensus 498 ~~L~~l~~c~~~~~~l~~~~~~~-~----------~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~-~~L~~L~ 564 (596)
++| +++++. ++.+|... . -+.+..+|.+..+++|+.+|++. ++|..+-.. ..+ ++|++||
T Consensus 410 eeL-~LSGNk-----L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 410 EEL-NLSGNK-----LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred HHH-hcccch-----hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceee
Confidence 555 555554 55555331 1 23344455678899999999985 778775332 335 8999999
Q ss_pred EecCchH
Q 007616 565 IYLCPYL 571 (596)
Q Consensus 565 i~~C~~L 571 (596)
++|.+.+
T Consensus 483 lSGN~~l 489 (1081)
T KOG0618|consen 483 LSGNTRL 489 (1081)
T ss_pred ccCCccc
Confidence 9999853
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=9.8e-21 Score=177.85 Aligned_cols=223 Identities=26% Similarity=0.298 Sum_probs=153.4
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l 237 (596)
.+-+.+.++..|.+|++++|++.++|++++.+..++.|+.++| .+..+|+.++.+.+|+.++.++|. ..++|++++.+
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~ 136 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRL 136 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc-eeecCchHHHH
Confidence 3456677888888899999988888888998888999999888 888888888888899999998888 88888888888
Q ss_pred cccCCCCcEEeccCC-CCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616 238 TSLRTLAKFVVGKGN-CSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH 316 (596)
Q Consensus 238 ~~L~~L~~~~~~~~~-~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 316 (596)
..|+.|+..++...+ +..+..+..+..+ .+.+ +.. ...+...-.++.|++++...+ .-...++.++.+
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l----~~~~----n~l-~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l 205 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKL----DLEG----NKL-KALPENHIAMKRLKHLDCNSN--LLETLPPELGGL 205 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHh----hccc----cch-hhCCHHHHHHHHHHhcccchh--hhhcCChhhcch
Confidence 888888766555433 2233333333322 1111 111 111122223667777766444 345566677777
Q ss_pred CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCCC
Q 007616 317 YGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPF 394 (596)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 394 (596)
.+|..|++..|.+..+|++ + ++..|++++++.|. ++.+| ....++++..|+++++ .+++.|.+.+- +
T Consensus 206 ~~L~~LyL~~Nki~~lPef-~--gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~cl------L 274 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLPEF-P--GCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICL------L 274 (565)
T ss_pred hhhHHHHhhhcccccCCCC-C--ccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHH------h
Confidence 7777888887777777743 3 56777777777766 55555 2446777888888774 56777776665 6
Q ss_pred CCcceeeccc
Q 007616 395 PSLETLCFED 404 (596)
Q Consensus 395 ~~L~~L~l~~ 404 (596)
.+|+.|++++
T Consensus 275 rsL~rLDlSN 284 (565)
T KOG0472|consen 275 RSLERLDLSN 284 (565)
T ss_pred hhhhhhcccC
Confidence 7777777776
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=3.5e-17 Score=169.57 Aligned_cols=86 Identities=23% Similarity=0.303 Sum_probs=79.8
Q ss_pred ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616 165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 244 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 244 (596)
+..+|+.||+++|.+..+|..+..+.+|+.|+++.| .+..+|.+++++.+|++|.|.+|. ++.+|.++..+.+|++|+
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLD 120 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccc
Confidence 344599999999999999999999999999999999 999999999999999999999998 999999999999999999
Q ss_pred cEEeccCC
Q 007616 245 KFVVGKGN 252 (596)
Q Consensus 245 ~~~~~~~~ 252 (596)
++++....
T Consensus 121 lS~N~f~~ 128 (1081)
T KOG0618|consen 121 LSFNHFGP 128 (1081)
T ss_pred cchhccCC
Confidence 98877654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=4.9e-14 Score=150.74 Aligned_cols=257 Identities=23% Similarity=0.210 Sum_probs=162.0
Q ss_pred CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcE
Q 007616 167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 246 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~ 246 (596)
..-..|+++++.++.+|+.+. .+|+.|++.+| .++.+|.. +++|++|++++|. ++.+|.. .++|++|++.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeecc
Confidence 456788999998888888775 47899999988 78888763 5788999999887 7788753 3466666654
Q ss_pred EeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEec
Q 007616 247 VVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRG 326 (596)
Q Consensus 247 ~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 326 (596)
.+.. ..++.+ ..+|+.|+++++.... .+. .+++|+.|++++
T Consensus 271 ~N~L------~~Lp~l----------------------------p~~L~~L~Ls~N~Lt~--LP~---~p~~L~~LdLS~ 311 (788)
T PRK15387 271 SNPL------THLPAL----------------------------PSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSD 311 (788)
T ss_pred CCch------hhhhhc----------------------------hhhcCEEECcCCcccc--ccc---cccccceeECCC
Confidence 3322 111110 1234445554443211 111 236788888888
Q ss_pred cCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc
Q 007616 327 YGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ 406 (596)
Q Consensus 327 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 406 (596)
|.+..+|.. ..+|+.|++++|. ++.+|.+. ++|+.|++++|. +..+|.. .++|+.|.+++
T Consensus 312 N~L~~Lp~l-----p~~L~~L~Ls~N~-L~~LP~lp--~~Lq~LdLS~N~-Ls~LP~l---------p~~L~~L~Ls~-- 371 (788)
T PRK15387 312 NQLASLPAL-----PSELCKLWAYNNQ-LTSLPTLP--SGLQELSVSDNQ-LASLPTL---------PSELYKLWAYN-- 371 (788)
T ss_pred CccccCCCC-----cccccccccccCc-cccccccc--cccceEecCCCc-cCCCCCC---------Ccccceehhhc--
Confidence 877777653 2357778888776 34455422 478888888753 4444421 34566666554
Q ss_pred cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCCcccceeeEecccccccccCCcccc
Q 007616 407 EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIR 486 (596)
Q Consensus 407 ~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~ 486 (596)
+.+. .+|...++|+.|+++++. +.......++|+.|++++|...
T Consensus 372 -------------N~L~-~LP~l~~~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N~Ls--------------------- 415 (788)
T PRK15387 372 -------------NRLT-SLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLT--------------------- 415 (788)
T ss_pred -------------cccc-cCcccccccceEEecCCc-ccCCCCcccCCCEEEccCCcCC---------------------
Confidence 3344 466556778888888764 2221122457888888887611
Q ss_pred cccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCC
Q 007616 487 IPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPV 547 (596)
Q Consensus 487 l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~ 547 (596)
.+|. .+.+|+.| ++++|. ++.+|. .+..+++|+.|++++|+-
T Consensus 416 -sIP~-l~~~L~~L-~Ls~Nq-----Lt~LP~-----------sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 416 -SLPM-LPSGLLSL-SVYRNQ-----LTRLPE-----------SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -CCCc-chhhhhhh-hhccCc-----ccccCh-----------HHhhccCCCeEECCCCCC
Confidence 1222 14567888 888776 556665 577888999999998653
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=8.7e-15 Score=138.02 Aligned_cols=254 Identities=18% Similarity=0.197 Sum_probs=161.1
Q ss_pred ccCCceeEEEEecccccccccccccccCc-ccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc
Q 007616 132 RFSRNLRHLSYLTSRFDGIKRFEGLHELP-NDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD 209 (596)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~ 209 (596)
..|.....+++..+.+. .|| .+|+.+++||.|||++|.|+.+ |..|.++++|..|-+.+++.++++|.+
T Consensus 64 ~LP~~tveirLdqN~I~---------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQIS---------SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cCCCcceEEEeccCCcc---------cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 45566677777777666 455 5689999999999999999977 788999999999999886699999976
Q ss_pred -ccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCC--CCchhccchhhcc---ce-EEEcCcCCCCCHh
Q 007616 210 -IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNC--SGLKELRSLMHLQ---EK-LTISGLENVNDAE 281 (596)
Q Consensus 210 -i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~--~~l~~l~~L~~L~---~~-l~i~~~~~~~~~~ 281 (596)
+++|..|+.|.+.-|. +.-++.. +..|++|..|.++.+..... ..+..+..++.+. +. ....++....+..
T Consensus 135 ~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred HhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 8899999999988887 6666655 77888888887776654331 1222332222221 10 0111111111111
Q ss_pred hHHHHhcCCccc----------------------ccccc---ccccCCcchhhhhccCCCCCccEEEEeccCCCCCC-CC
Q 007616 282 DAKEAQLNGKKK----------------------LEALS---PKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFP-AW 335 (596)
Q Consensus 282 ~~~~~~l~~~~~----------------------L~~L~---l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~ 335 (596)
......+++... ++.+. .+.+..........+..+++|++|++++|.++.+. .|
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 111111111111 11110 01111122222334677899999999999988774 45
Q ss_pred CCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616 336 LGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED 404 (596)
Q Consensus 336 ~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 404 (596)
+. ....+++|.+..|+ ++.+. .+.++..|+.|+|++|.-....+..|.. ..+|.+|.+-.
T Consensus 294 Fe--~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~------~~~l~~l~l~~ 355 (498)
T KOG4237|consen 294 FE--GAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT------LFSLSTLNLLS 355 (498)
T ss_pred hc--chhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccc------cceeeeeehcc
Confidence 54 67899999999988 44444 5778899999999997544444443322 56777777765
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.46 E-value=2e-14 Score=157.12 Aligned_cols=296 Identities=26% Similarity=0.301 Sum_probs=194.5
Q ss_pred ceeEEEEecccccccccccccccCccc-ccccCCCcEEeecCC-CccccccccccCCcCcEEEccccccccccCCcccCC
Q 007616 136 NLRHLSYLTSRFDGIKRFEGLHELPND-IAELKHLRYLDFSHT-AIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNL 213 (596)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~-~~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 213 (596)
+++.+-+..+.. . +..++.. |..++.||+|||++| .+..+|++|+.|.+||+|+++++ .+..+|.++++|
T Consensus 546 ~L~tLll~~n~~-~------l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~L 617 (889)
T KOG4658|consen 546 KLRTLLLQRNSD-W------LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNL 617 (889)
T ss_pred ccceEEEeecch-h------hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHH
Confidence 466666666542 1 1144443 688999999999987 67899999999999999999999 899999999999
Q ss_pred CccceeecCCCCccccccccccCCcccCCCCcEEec-cCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcc
Q 007616 214 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG-KGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKK 292 (596)
Q Consensus 214 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~ 292 (596)
++|.+|++..+..+..+|.....|++||+|.+.... ..+...+.++.+|..|+ .+.+.... ......+..+.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s------~~~~e~l~~~~ 690 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISS------VLLLEDLLGMT 690 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecch------hHhHhhhhhhH
Confidence 999999999998777776667779999999987765 23345566666666665 44442211 11112233444
Q ss_pred cccccccccc--CCcchhhhhccCCCCCccEEEEeccCCCCCCC-CCCC---CC-CCCccEEEEecCCCCCCCCCCCCCC
Q 007616 293 KLEALSPKWG--NKIQTCVFEMLKPHYGLKELKVRGYGGTKFPA-WLGQ---SS-FENLVVLRFKNCNQCTTLPSVGHLP 365 (596)
Q Consensus 293 ~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~---~~-~~~L~~L~l~~~~~~~~l~~l~~l~ 365 (596)
.|..+...-. ..........+..+.+|+.|.+.++....... |... .. |+++..+.+.+|.....+.+....|
T Consensus 691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~ 770 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAP 770 (889)
T ss_pred HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccC
Confidence 4443322211 01223344556678889999999887654322 2111 12 5567777777887777766666678
Q ss_pred ccceeeccCccCceEeCccccCC----CCCCCCCCccee-ecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEee
Q 007616 366 SLKNLVIKGMAKVKSVGLEFCGN----YCSEPFPSLETL-CFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITS 440 (596)
Q Consensus 366 ~L~~L~L~~~~~l~~~~~~~~~~----~~~~~~~~L~~L-~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~ 440 (596)
+|+.|.+.+|..++.+....... .....|+++..+ .+.+.++++++. ..|-.++.|+.+.+..
T Consensus 771 ~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~------------~~~l~~~~l~~~~ve~ 838 (889)
T KOG4658|consen 771 HLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLY------------WLPLSFLKLEELIVEE 838 (889)
T ss_pred cccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeE------------ecccCccchhheehhc
Confidence 99999999988777664332211 012345566666 455555555443 4444466688888888
Q ss_pred ccChhccCCCCCCcceEEecCC
Q 007616 441 CEQLLVSYTALPPLCELEIDGF 462 (596)
Q Consensus 441 c~~l~~~~~~l~~L~~L~l~~c 462 (596)
|+++ ..+|.+.++.+.+|
T Consensus 839 ~p~l----~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 839 CPKL----GKLPLLSTLTIVGC 856 (889)
T ss_pred Cccc----ccCccccccceecc
Confidence 7765 44666666677665
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.3e-15 Score=127.19 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=117.6
Q ss_pred cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCC
Q 007616 164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 243 (596)
-.+.+...|.+++|+++.+|+.|..+.+|+.|++.+| .+.++|..++.+++|++|+++-|. +..+|.++|.++.|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhh
Confidence 3567888899999999999999999999999999999 899999999999999999999988 88999999999999999
Q ss_pred CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616 244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK 323 (596)
Q Consensus 244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 323 (596)
++.++......-. .++..+..|+.|.++.+ .....+..++.+++|+.|.
T Consensus 108 dltynnl~e~~lp-----------------------------gnff~m~tlralyl~dn--dfe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 108 DLTYNNLNENSLP-----------------------------GNFFYMTTLRALYLGDN--DFEILPPDVGKLTNLQILS 156 (264)
T ss_pred hccccccccccCC-----------------------------cchhHHHHHHHHHhcCC--CcccCChhhhhhcceeEEe
Confidence 9876654322111 12333444555555544 2334455566667777777
Q ss_pred EeccCCCCCCCCCCCCCCCCccEEEEecCC
Q 007616 324 VRGYGGTKFPAWLGQSSFENLVVLRFKNCN 353 (596)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 353 (596)
+..|....+|..++ .+..|++|.+.+|.
T Consensus 157 lrdndll~lpkeig--~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIG--DLTRLRELHIQGNR 184 (264)
T ss_pred eccCchhhCcHHHH--HHHHHHHHhcccce
Confidence 77777667776666 56677777777766
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=5.8e-13 Score=142.58 Aligned_cols=242 Identities=22% Similarity=0.180 Sum_probs=158.6
Q ss_pred cccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccccc
Q 007616 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIG 235 (596)
Q Consensus 156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~ 235 (596)
+..+|+.+. .+|+.|++++|+++.+|.. +++|++|++++| .++.+|.. .++|+.|++++|. +..+|...
T Consensus 213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~lp- 281 (788)
T PRK15387 213 LTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP-LTHLPALP- 281 (788)
T ss_pred CCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccCCc-hhhhhhch-
Confidence 346888775 4899999999999999863 589999999999 88888863 4688899999998 77877633
Q ss_pred CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCC
Q 007616 236 KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP 315 (596)
Q Consensus 236 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 315 (596)
++|+.|++.++....... . +..|+ .+.+++. .+.... . ...+|+.|+++.+.... ++ . .
T Consensus 282 --~~L~~L~Ls~N~Lt~LP~--~---p~~L~-~LdLS~N-~L~~Lp----~---lp~~L~~L~Ls~N~L~~--LP-~--l 340 (788)
T PRK15387 282 --SGLCKLWIFGNQLTSLPV--L---PPGLQ-ELSVSDN-QLASLP----A---LPSELCKLWAYNNQLTS--LP-T--L 340 (788)
T ss_pred --hhcCEEECcCCccccccc--c---ccccc-eeECCCC-ccccCC----C---CcccccccccccCcccc--cc-c--c
Confidence 456666665544332111 1 12233 4444331 111110 0 12346667766654221 11 1 1
Q ss_pred CCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCC
Q 007616 316 HYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFP 395 (596)
Q Consensus 316 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 395 (596)
+.+|+.|++++|.+..+|.. ..+|+.|++++|. +..+|.+ .++|+.|++++|. +..++.. .+
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~l-----p~~L~~L~Ls~N~-L~~LP~l--~~~L~~LdLs~N~-Lt~LP~l---------~s 402 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNR-LTSLPAL--PSGLKELIVSGNR-LTSLPVL---------PS 402 (788)
T ss_pred ccccceEecCCCccCCCCCC-----Ccccceehhhccc-cccCccc--ccccceEEecCCc-ccCCCCc---------cc
Confidence 24788899988888877753 3467888888776 4456643 3578888888764 4444321 45
Q ss_pred CcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeecc--ChhccCCCCCCcceEEecCCc
Q 007616 396 SLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCE--QLLVSYTALPPLCELEIDGFS 463 (596)
Q Consensus 396 ~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~ 463 (596)
+|+.|++++ +.++ .+|..+.+|+.|+++++. .++..+..+++|+.|++++|+
T Consensus 403 ~L~~LdLS~---------------N~Ls-sIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 403 ELKELMVSG---------------NRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCEEEccC---------------CcCC-CCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 678777776 3445 466656678888888765 456777889999999999987
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=7.6e-13 Score=142.59 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=32.2
Q ss_pred CCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc
Q 007616 168 HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR 233 (596)
Q Consensus 168 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 233 (596)
+...|+++++.++.+|..+. ++|+.|++++| .+..+|..+. .+|++|++++|. +..+|..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~ 238 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPAT 238 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChh
Confidence 34555555555555555442 35556666655 5555555443 356666666555 5555543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=6.1e-13 Score=143.32 Aligned_cols=160 Identities=22% Similarity=0.258 Sum_probs=101.9
Q ss_pred CccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCc
Q 007616 318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSL 397 (596)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 397 (596)
+|+.|++++|....+|..+. ++|+.|++++|. ++.+|.. -.++|+.|++++|. +..++... +++|
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~----~sL~~L~Ls~N~-Lt~LP~~-lp~sL~~L~Ls~N~-Lt~LP~~l--------~~sL 327 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP----EELRYLSVYDNS-IRTLPAH-LPSGITHLNVQSNS-LTALPETL--------PPGL 327 (754)
T ss_pred CCCEEECcCCccCccccccC----CCCcEEECCCCc-cccCccc-chhhHHHHHhcCCc-cccCCccc--------cccc
Confidence 45566666666666665432 489999999986 4555521 12578999998864 44444322 4678
Q ss_pred ceeecccCccccccceeEEecCCCCCCCCCC-CCCCCCEEEEeeccC--hhccCCCCCCcceEEecCCcccceeeEeccc
Q 007616 398 ETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ-RFSSLERIVITSCEQ--LLVSYTALPPLCELEIDGFSELFLILQIQGW 474 (596)
Q Consensus 398 ~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~-~l~~L~~L~l~~c~~--l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~ 474 (596)
+.|.+.++ .++ .+|. ..++|+.|++++|.- ++..+ .++|+.|++++|...
T Consensus 328 ~~L~Ls~N---------------~Lt-~LP~~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt--------- 380 (754)
T PRK15370 328 KTLEAGEN---------------ALT-SLPASLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT--------- 380 (754)
T ss_pred eeccccCC---------------ccc-cCChhhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC---------
Confidence 88877763 233 3443 236899999998852 22222 367889999888621
Q ss_pred ccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCC-CCCCCCCCCeeecCCCC
Q 007616 475 RSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLS-FVGNLTSLERLELPRCP 546 (596)
Q Consensus 475 ~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~-~~~~l~~L~~L~l~~c~ 546 (596)
.+|..+..+|+.| ++++|. +..+|.. ++ ....++++..|++.+++
T Consensus 381 -------------~LP~~l~~sL~~L-dLs~N~-----L~~LP~s--------l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 381 -------------NLPENLPAALQIM-QASRNN-----LVRLPES--------LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -------------CCCHhHHHHHHHH-hhccCC-----cccCchh--------HHHHhhcCCCccEEEeeCCC
Confidence 3555556678899 988877 5555541 11 23345788899998865
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=4.6e-14 Score=117.95 Aligned_cols=146 Identities=27% Similarity=0.274 Sum_probs=110.8
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcc-ccccccccC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLL-EEMPLRIGK 236 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l-~~lp~~l~~ 236 (596)
.+|+.+..+++|++|++++|+|+++|.+++.+++|+.|++.-| .+..+|.++|.++.|+.||+.+|..- ..+|..+..
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhH
Confidence 6899999999999999999999999999999999999999998 88999999999999999999998732 237877888
Q ss_pred CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616 237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH 316 (596)
Q Consensus 237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 316 (596)
|+.|+.|++..++..- ++..++++++|+.|.+..+. -...+..++.+
T Consensus 126 m~tlralyl~dndfe~-------------------------------lp~dvg~lt~lqil~lrdnd--ll~lpkeig~l 172 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEI-------------------------------LPPDVGKLTNLQILSLRDND--LLSLPKEIGDL 172 (264)
T ss_pred HHHHHHHHhcCCCccc-------------------------------CChhhhhhcceeEEeeccCc--hhhCcHHHHHH
Confidence 8888888764443211 11124444555555554442 23345556667
Q ss_pred CCccEEEEeccCCCCCCCCCC
Q 007616 317 YGLKELKVRGYGGTKFPAWLG 337 (596)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~ 337 (596)
..|++|++.+|..+.+|+.++
T Consensus 173 t~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHhcccceeeecChhhh
Confidence 778888888888777776544
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=4e-13 Score=126.95 Aligned_cols=106 Identities=24% Similarity=0.291 Sum_probs=78.1
Q ss_pred cccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc
Q 007616 156 LHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR 233 (596)
Q Consensus 156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~ 233 (596)
|.++|..+. ..-..++|..|.|+.+|+ .|+.+++||.|||+.| .+..| |..|..+.+|..|-+.+++.++++|.+
T Consensus 58 L~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 58 LTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cccCcccCC--CcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 335665542 245678999999999985 7899999999999999 55544 677999999999888886569999988
Q ss_pred -ccCCcccCCCCcEEeccCCCCCchhccchhhc
Q 007616 234 -IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHL 265 (596)
Q Consensus 234 -l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L 265 (596)
++.|.+|+-|.+..+.. .+..-..+..+..+
T Consensus 135 ~F~gL~slqrLllNan~i-~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHI-NCIRQDALRDLPSL 166 (498)
T ss_pred HhhhHHHHHHHhcChhhh-cchhHHHHHHhhhc
Confidence 89999999887654433 23223334444444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.98 E-value=8.3e-11 Score=117.38 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=58.9
Q ss_pred CcccccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccc------cccCCcccCCCccceeecCCCCcc
Q 007616 159 LPNDIAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRL------KKLFPDIGNLVNLRHLKDSHSNLL 227 (596)
Q Consensus 159 lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~------~~lp~~i~~L~~L~~L~l~~~~~l 227 (596)
.+..+..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..++++++|+.|++++|...
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 3444566777999999999884 45666777888999999887322 223345667888888888888743
Q ss_pred ccccccccCCcc---cCCCCcEEe
Q 007616 228 EEMPLRIGKLTS---LRTLAKFVV 248 (596)
Q Consensus 228 ~~lp~~l~~l~~---L~~L~~~~~ 248 (596)
...+..+..+.+ |++|++.++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCC
Confidence 344444444433 666655443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=7.8e-11 Score=117.59 Aligned_cols=91 Identities=19% Similarity=0.112 Sum_probs=59.8
Q ss_pred cCcccccccCCCcEEeecCCCccc-------cccccccCCcCcEEEccccccccccCCcccCCCc---cceeecCCCCcc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEV-------LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN---LRHLKDSHSNLL 227 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~---L~~L~l~~~~~l 227 (596)
.++..+...+.++.|+++++.+.. ++..+..+++|+.|++++|......+..+..+.+ |++|++++|. +
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~ 120 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-L 120 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-c
Confidence 456666777788899988876652 3455677889999999888443344444555544 9999998887 4
Q ss_pred cc-----ccccccCC-cccCCCCcEEec
Q 007616 228 EE-----MPLRIGKL-TSLRTLAKFVVG 249 (596)
Q Consensus 228 ~~-----lp~~l~~l-~~L~~L~~~~~~ 249 (596)
.. +...+..+ ++|+.|++.++.
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 32 22334455 666776655444
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=2.6e-09 Score=93.90 Aligned_cols=104 Identities=23% Similarity=0.281 Sum_probs=30.5
Q ss_pred cccCCCcEEeecCCCccccccccc-cCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccccc-CCcccC
Q 007616 164 AELKHLRYLDFSHTAIEVLSESVS-TLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIG-KLTSLR 241 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~-~l~~L~ 241 (596)
.+..++|.|+|++|.|+.+. .++ .+.+|+.|++++| .++.++ ++..+++|+.|++++|. ++.+++++. .+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence 34446777788887777663 344 4677778888877 677663 57777778888887777 777655543 467777
Q ss_pred CCCcEEeccCCCCCchhccchhhccceEEEc
Q 007616 242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTIS 272 (596)
Q Consensus 242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~ 272 (596)
+|++.++.......+..+..++.|+ .+.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~-~L~L~ 121 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLR-VLSLE 121 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT---EEE-T
T ss_pred EEECcCCcCCChHHhHHHHcCCCcc-eeecc
Confidence 7776555554444444444444444 44443
No 26
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.66 E-value=7.1e-09 Score=101.63 Aligned_cols=54 Identities=31% Similarity=0.656 Sum_probs=48.2
Q ss_pred hhhhHHHHHHhhhhhhhhHHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCC
Q 007616 14 LFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHE 67 (596)
Q Consensus 14 ~~~~i~~~L~lSY~~L~~~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~ 67 (596)
....++.++++||+.||+++|.||+|||+||+++.|+++.|+++|+++||+...
T Consensus 232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 468899999999999999999999999999999999999999999999999753
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.64 E-value=2.4e-09 Score=106.44 Aligned_cols=84 Identities=35% Similarity=0.573 Sum_probs=45.1
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l 237 (596)
.+|..++.+..|.+|+|+.|++..+|..++.|+ |+.|.+++| +++.+|+.++.+..|..||.+.|. +..+|..++.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l 188 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYL 188 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhH
Confidence 455555555555555555555555555555443 555555555 555555555555555555555555 55555555555
Q ss_pred cccCCCC
Q 007616 238 TSLRTLA 244 (596)
Q Consensus 238 ~~L~~L~ 244 (596)
.+|+.|.
T Consensus 189 ~slr~l~ 195 (722)
T KOG0532|consen 189 TSLRDLN 195 (722)
T ss_pred HHHHHHH
Confidence 5555443
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.64 E-value=7.6e-10 Score=106.01 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCCCCCCEEEEeeccChh-----ccCCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc-chhhhccc
Q 007616 428 QRFSSLERIVITSCEQLL-----VSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL-LDGLQKLS 501 (596)
Q Consensus 428 ~~l~~L~~L~l~~c~~l~-----~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~-l~~L~~L~ 501 (596)
++.++|+.+.++.|.++. ..-.+.+.|+.+++.+|...... . +. ..+. ++.|+.|
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-t----------L~-------sls~~C~~lr~l- 377 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-T----------LA-------SLSRNCPRLRVL- 377 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-h----------Hh-------hhccCCchhccC-
Confidence 456777777777777552 12234667777777777543211 0 00 0001 6777777
Q ss_pred cccccccccccceecccCCCCCCCCCCC-CCCCCCCCCeeecCCCCCCccCCC--CCCCCCccEEEEecCchHHHhhccC
Q 007616 502 HITRISMVGSLLVYIAEGGEFPQLESLS-FVGNLTSLERLELPRCPVLRSFPE--NVLPPSLVYLSIYLCPYLEERCKKD 578 (596)
Q Consensus 502 ~l~~c~~~~~~l~~~~~~~~~~~L~~l~-~~~~l~~L~~L~l~~c~~l~~lp~--~~~~~~L~~L~i~~C~~L~~~~~~~ 578 (596)
.++.|.. ++.- .+..+. +-..+..|+.+.+.+||.++.--- ....++|+.+++++|...++--.+.
T Consensus 378 slshce~----itD~-------gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 378 SLSHCEL----ITDE-------GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred Chhhhhh----hhhh-------hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 7887775 3221 001111 345677888899999987765322 1235788889999998775433221
Q ss_pred CCCCccccCCccceee
Q 007616 579 KGEYWHLVADIPKFQT 594 (596)
Q Consensus 579 ~~~~~~~i~~i~~~~~ 594 (596)
.-.|.|+++|
T Consensus 447 ------~~~~lp~i~v 456 (483)
T KOG4341|consen 447 ------FATHLPNIKV 456 (483)
T ss_pred ------HHhhCcccee
Confidence 2356666654
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=2.5e-08 Score=102.54 Aligned_cols=180 Identities=23% Similarity=0.292 Sum_probs=107.0
Q ss_pred ccccCCCcEEeecCCCccccccccccCC-cCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLY-NLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 241 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~ 241 (596)
+..++.++.|++.++.++.+|+..+.+. +|+.|++++| .+..+|..++.+++|+.|++++|. +.++|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 3455677788888888888777777774 7888888887 777777677788888888888887 777777666777777
Q ss_pred CCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccE
Q 007616 242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKE 321 (596)
Q Consensus 242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 321 (596)
.|++.++......... .....|+.+.++.+. ....+..+....++..
T Consensus 190 ~L~ls~N~i~~l~~~~-------------------------------~~~~~L~~l~~~~N~--~~~~~~~~~~~~~l~~ 236 (394)
T COG4886 190 NLDLSGNKISDLPPEI-------------------------------ELLSALEELDLSNNS--IIELLSSLSNLKNLSG 236 (394)
T ss_pred heeccCCccccCchhh-------------------------------hhhhhhhhhhhcCCc--ceecchhhhhcccccc
Confidence 7766444332211110 111223333333331 1112222333444555
Q ss_pred EEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceE
Q 007616 322 LKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKS 380 (596)
Q Consensus 322 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~ 380 (596)
+.+.++....++..+. .+++++.|++++|. +..++.++.+.+++.|+++++.....
T Consensus 237 l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 237 LELSNNKLEDLPESIG--NLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccCCceeeeccchhc--cccccceecccccc-ccccccccccCccCEEeccCcccccc
Confidence 5555555544455554 55667777777666 44444466677777777776554433
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.1e-08 Score=93.88 Aligned_cols=136 Identities=22% Similarity=0.156 Sum_probs=96.7
Q ss_pred cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCC
Q 007616 164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 243 (596)
.-.+.|..+||++|.|+.+..++.-.+.++.|++++| .+..+ .++..|.+|++||+++|. +..+-..-.++-+.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTV-QNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeee-hhhhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 3456789999999999999999999999999999999 67666 348889999999999998 66664444456666777
Q ss_pred CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616 244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK 323 (596)
Q Consensus 244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 323 (596)
.+..+. +..+.. ++++.+|..|++..++....+....++++|.|+.+.
T Consensus 358 ~La~N~------iE~LSG--------------------------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 358 KLAQNK------IETLSG--------------------------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ehhhhh------Hhhhhh--------------------------hHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 654332 222222 333445666677666655555566677777777777
Q ss_pred EeccCCCCCCC
Q 007616 324 VRGYGGTKFPA 334 (596)
Q Consensus 324 l~~~~~~~~~~ 334 (596)
+.+|....++.
T Consensus 406 L~~NPl~~~vd 416 (490)
T KOG1259|consen 406 LTGNPLAGSVD 416 (490)
T ss_pred hcCCCccccch
Confidence 77777655554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=1.2e-07 Score=97.52 Aligned_cols=164 Identities=27% Similarity=0.309 Sum_probs=122.6
Q ss_pred cCcccccccC-CCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616 158 ELPNDIAELK-HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 158 ~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
.+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++| .+.++|...+.+++|+.|++++|. +..+|..++.
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~ 207 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIEL 207 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCc-cccCchhhhh
Confidence 6777777775 999999999999999888999999999999999 999999888899999999999999 9999998877
Q ss_pred CcccCCCCcEEec-cCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCC
Q 007616 237 LTSLRTLAKFVVG-KGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP 315 (596)
Q Consensus 237 l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 315 (596)
+..|++|.+.++. ......+. .+.++..+.+..+. ....+..+..
T Consensus 208 ~~~L~~l~~~~N~~~~~~~~~~--------------------------------~~~~l~~l~l~~n~--~~~~~~~~~~ 253 (394)
T COG4886 208 LSALEELDLSNNSIIELLSSLS--------------------------------NLKNLSGLELSNNK--LEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhcCCcceecchhhh--------------------------------hcccccccccCCce--eeeccchhcc
Confidence 8889999876553 11111111 12222222222221 1111344556
Q ss_pred CCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCC
Q 007616 316 HYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPS 360 (596)
Q Consensus 316 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~ 360 (596)
+++++.|++++|....++. ++ .+.+++.|+++++.....++.
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~--~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LG--SLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccceecccccccccccc-cc--ccCccCEEeccCccccccchh
Confidence 6779999999998888876 44 688999999999886666553
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.3e-08 Score=98.27 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=33.4
Q ss_pred cccCCCcEEeecCCCccccc--cccccCCcCcEEEcccccccc---ccCCcccCCCccceeecCCCC
Q 007616 164 AELKHLRYLDFSHTAIEVLS--ESVSTLYNLQTLILEYCYRLK---KLFPDIGNLVNLRHLKDSHSN 225 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~---~lp~~i~~L~~L~~L~l~~~~ 225 (596)
.++++||...|.++.+...+ .....|++++.|||+.| .+. .+-.....|++|+.|+++.|.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc
Confidence 45566666666666665444 24455666666666665 221 222224456666666666665
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=1.8e-07 Score=67.39 Aligned_cols=58 Identities=38% Similarity=0.444 Sum_probs=50.5
Q ss_pred CCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCC
Q 007616 167 KHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSN 225 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~ 225 (596)
++|++|++++|+++.+|+ .+..+++|++|++++| .+..+|+ .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999884 7789999999999988 7777765 58999999999999986
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=1.8e-07 Score=100.80 Aligned_cols=88 Identities=25% Similarity=0.379 Sum_probs=74.6
Q ss_pred cCcccccccCCCcEEeecCCCcc-ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
.+|..++.+++|+.|+|++|.+. .+|..++.+++|++|++++|.....+|..++++++|++|++++|...+.+|..++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 78889999999999999999998 78889999999999999999666688999999999999999999977789988765
Q ss_pred C-cccCCCCc
Q 007616 237 L-TSLRTLAK 245 (596)
Q Consensus 237 l-~~L~~L~~ 245 (596)
+ .++..+++
T Consensus 513 ~~~~~~~l~~ 522 (623)
T PLN03150 513 RLLHRASFNF 522 (623)
T ss_pred ccccCceEEe
Confidence 3 34444443
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.1e-09 Score=95.47 Aligned_cols=158 Identities=18% Similarity=0.103 Sum_probs=85.6
Q ss_pred CCcEEeecCCCcc--ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc--ccCCcccCCC
Q 007616 168 HLRYLDFSHTAIE--VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTL 243 (596)
Q Consensus 168 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~--l~~l~~L~~L 243 (596)
.|++|||+...|+ .+-..++.|.+|+.|.+.+...-..+-..|.+-.+|+.|+++.|.-+++.... +.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888888888777 45455677888888888877433444455777788888888888755553322 5677777777
Q ss_pred CcEEeccCCCCCchhccch-hhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616 244 AKFVVGKGNCSGLKELRSL-MHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322 (596)
Q Consensus 244 ~~~~~~~~~~~~l~~l~~L-~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 322 (596)
+++-+.......-....+. ..+. .+.++++...-.. ..+..-...+++|.+|+++.+.......+..+..++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~-~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLT-QLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhh-hhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 7655544332210001110 0011 2233332221111 11222234566666666665554444445555555555555
Q ss_pred EEecc
Q 007616 323 KVRGY 327 (596)
Q Consensus 323 ~l~~~ 327 (596)
.++.|
T Consensus 344 SlsRC 348 (419)
T KOG2120|consen 344 SLSRC 348 (419)
T ss_pred ehhhh
Confidence 55544
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.43 E-value=2.7e-08 Score=99.13 Aligned_cols=178 Identities=23% Similarity=0.240 Sum_probs=130.8
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l 237 (596)
++|..+..+..|..+.+.+|.+..+|..++.+..|.+||++.| .+..+|..+..| -|+.|-+++|. ++.+|++++-+
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sNNk-l~~lp~~ig~~ 165 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSNNK-LTSLPEEIGLL 165 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEecCc-cccCCcccccc
Confidence 7899999999999999999999999999999999999999999 899999988877 58999999998 99999999988
Q ss_pred cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616 238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY 317 (596)
Q Consensus 238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (596)
..|..|+.+.+...+ .... ++++..|+.|.+..+. -...++.+.. -
T Consensus 166 ~tl~~ld~s~nei~s--lpsq-----------------------------l~~l~slr~l~vrRn~--l~~lp~El~~-L 211 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQS--LPSQ-----------------------------LGYLTSLRDLNVRRNH--LEDLPEELCS-L 211 (722)
T ss_pred hhHHHhhhhhhhhhh--chHH-----------------------------hhhHHHHHHHHHhhhh--hhhCCHHHhC-C
Confidence 899999876554322 1111 2333344444443332 2223334442 2
Q ss_pred CccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC----CCCCCCccceeeccCc
Q 007616 318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP----SVGHLPSLKNLVIKGM 375 (596)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~----~l~~l~~L~~L~L~~~ 375 (596)
.|..||++.|++..+|..+. .+..|++|.|.+|+ +...| .-|...-.++|+..-|
T Consensus 212 pLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeecccCceeecchhhh--hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 47788888888888887777 78888888888887 33333 2344455566666655
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=3.2e-09 Score=101.85 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=34.2
Q ss_pred CCcEEeecCCCc---cccccccccCCcCcEEEccccccccccC--CcccCCCccceeecCCCCcccc
Q 007616 168 HLRYLDFSHTAI---EVLSESVSTLYNLQTLILEYCYRLKKLF--PDIGNLVNLRHLKDSHSNLLEE 229 (596)
Q Consensus 168 ~L~~L~L~~~~i---~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~ 229 (596)
.||.|.++++.- +.+-.....++++++|++.+|..+++-- .--..+.+|++|++..|..++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 466666666632 2333344567777777777775444211 1123456677777766654444
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=1.5e-07 Score=82.80 Aligned_cols=102 Identities=26% Similarity=0.342 Sum_probs=38.8
Q ss_pred ceeEEEEecccccccccccccccCccccc-ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcc-cCC
Q 007616 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIA-ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDI-GNL 213 (596)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i-~~L 213 (596)
+.+.|.+.++.+..+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++| .++.+++.+ ..+
T Consensus 20 ~~~~L~L~~n~I~~Ie----------~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE----------NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNL 87 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred cccccccccccccccc----------chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhC
Confidence 3456666666554332 244 5788999999999999885 4788999999999999 788886555 368
Q ss_pred CccceeecCCCCccccccc--cccCCcccCCCCcEEecc
Q 007616 214 VNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVGK 250 (596)
Q Consensus 214 ~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~~~~~~~ 250 (596)
++|++|++++|. +.++-. .+..+++|+.|++.++..
T Consensus 88 p~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 88 PNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc
Confidence 999999999998 666533 366677888887755554
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.8e-07 Score=87.66 Aligned_cols=65 Identities=23% Similarity=0.108 Sum_probs=48.4
Q ss_pred ccCCcCcEEEccccccccccCC--cccCCCccceeecCCCCcccc--ccccccCCcccCCCCcEEeccCC
Q 007616 187 STLYNLQTLILEYCYRLKKLFP--DIGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGN 252 (596)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~~~~~~~~~ 252 (596)
.++.+|+...|+++ .+...+. ....+++++.||++.|-+-.. +-.-...|++|+.|+++.+....
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 46889999999998 6766663 577899999999999862222 22336678999999887766543
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-08 Score=92.98 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=91.8
Q ss_pred cCcEEEcccccccc--ccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccce
Q 007616 191 NLQTLILEYCYRLK--KLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEK 268 (596)
Q Consensus 191 ~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~ 268 (596)
.||+|||+.. .++ .+-.-+..+.+|+.|.+.++..-..+-..+.+=.+|+.|+++
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls---------------------- 242 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS---------------------- 242 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc----------------------
Confidence 3566666654 222 111223445556666666555333333344454555555433
Q ss_pred EEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCC-CCCccEEEEeccCC----CCCCCCCCCCCCCC
Q 007616 269 LTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP-HYGLKELKVRGYGG----TKFPAWLGQSSFEN 343 (596)
Q Consensus 269 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~----~~~~~~~~~~~~~~ 343 (596)
.+.+.. .......+..|+.|.+|.++||......+-..+.. -++|..|+++|+.. ..+..... .+++
T Consensus 243 ----m~sG~t--~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~--rcp~ 314 (419)
T KOG2120|consen 243 ----MCSGFT--ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVR--RCPN 314 (419)
T ss_pred ----cccccc--hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHH--hCCc
Confidence 222222 23344457788999999999998654443222222 47888999998752 12222222 6788
Q ss_pred ccEEEEecCCCCCC--CCCCCCCCccceeeccCccCc
Q 007616 344 LVVLRFKNCNQCTT--LPSVGHLPSLKNLVIKGMAKV 378 (596)
Q Consensus 344 L~~L~l~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l 378 (596)
|..|++++|..++. +..+.+++.|++|.++.|..+
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 99999998886654 225667888999999888754
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=1.9e-06 Score=56.61 Aligned_cols=40 Identities=35% Similarity=0.399 Sum_probs=28.9
Q ss_pred CCCcEEeecCCCccccccccccCCcCcEEEccccccccccC
Q 007616 167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLF 207 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp 207 (596)
++|++|++++|.|+.+|+.+++|++|++|++++| .+.++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4678888888888888777788888888888887 565553
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=1.5e-06 Score=62.55 Aligned_cols=57 Identities=33% Similarity=0.399 Sum_probs=49.2
Q ss_pred CcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEe
Q 007616 190 YNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVV 248 (596)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~ 248 (596)
++|++|++++| .+..+|. .+.++++|++|++++|. ++.+|++ +..+++|++|++.++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 57999999999 8888885 58899999999999999 8888865 889999999986443
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.04 E-value=1.3e-06 Score=80.57 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=77.7
Q ss_pred HHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCC
Q 007616 285 EAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHL 364 (596)
Q Consensus 285 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l 364 (596)
..+..-.+.++.|+++.+..... ..+..+++|+.|++++|....+.-|-. .+.+++.|.+++|. ++++..++++
T Consensus 300 DESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N~-iE~LSGL~KL 373 (490)
T KOG1259|consen 300 DESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQNK-IETLSGLRKL 373 (490)
T ss_pred hhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhHhhhhhHh--hhcCEeeeehhhhh-HhhhhhhHhh
Confidence 34455667888888888764333 336667889999999988777777765 67889999999876 6777788888
Q ss_pred CccceeeccCccCceEeCccccCCCCCCCCCCcceeecccC
Q 007616 365 PSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDM 405 (596)
Q Consensus 365 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 405 (596)
-+|.+|++++|. ++.+..- ..++.+|.|+.+.+.+.
T Consensus 374 YSLvnLDl~~N~-Ie~ldeV----~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 374 YSLVNLDLSSNQ-IEELDEV----NHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhheeccccccc-hhhHHHh----cccccccHHHHHhhcCC
Confidence 899999998863 3333211 12334788887777664
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=3.6e-05 Score=76.39 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=41.5
Q ss_pred cCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEe
Q 007616 313 LKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSV 381 (596)
Q Consensus 313 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 381 (596)
+..+.++..|++++|....+|. -..+|+.|.+++|..++.+|..- .++|+.|.+.+|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccc
Confidence 4445778888888887777772 22468888888877776666311 256777777777655433
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.99 E-value=5.1e-06 Score=89.77 Aligned_cols=82 Identities=23% Similarity=0.301 Sum_probs=72.9
Q ss_pred CcEEeecCCCcc-ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEE
Q 007616 169 LRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFV 247 (596)
Q Consensus 169 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~ 247 (596)
++.|+|++|.+. .+|..++.+++|+.|+|++|.....+|..++.+++|+.|++++|...+.+|..++++++|++|++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 778999999998 7899999999999999999955568998999999999999999996678999999999999998876
Q ss_pred ecc
Q 007616 248 VGK 250 (596)
Q Consensus 248 ~~~ 250 (596)
+..
T Consensus 500 N~l 502 (623)
T PLN03150 500 NSL 502 (623)
T ss_pred Ccc
Confidence 644
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.99 E-value=2.3e-06 Score=80.80 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=55.8
Q ss_pred ccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccc----cccCCc-------ccCCCccceeecCCCCc
Q 007616 163 IAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRL----KKLFPD-------IGNLVNLRHLKDSHSNL 226 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~----~~lp~~-------i~~L~~L~~L~l~~~~~ 226 (596)
+..+..+..++|++|.|. .+.+.+.+.++|+.-+++.- .. .++|+. +-..++|++||||+|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345667788888888775 24455666777887777754 22 233433 33456888888888873
Q ss_pred ccccccc----ccCCcccCCCCcEEeccCC
Q 007616 227 LEEMPLR----IGKLTSLRTLAKFVVGKGN 252 (596)
Q Consensus 227 l~~lp~~----l~~l~~L~~L~~~~~~~~~ 252 (596)
-...++. +.+++.|++|.+.++++..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 3333332 5567788888877776643
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=7.1e-06 Score=53.94 Aligned_cols=41 Identities=29% Similarity=0.420 Sum_probs=34.3
Q ss_pred CcCcEEEccccccccccCCcccCCCccceeecCCCCccccccc
Q 007616 190 YNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPL 232 (596)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 232 (596)
++|++|++++| .++.+|..+++|++|++|++++|. +.++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 57999999999 888999889999999999999998 776643
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=2.5e-06 Score=87.88 Aligned_cols=84 Identities=29% Similarity=0.380 Sum_probs=55.4
Q ss_pred ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 242 (596)
++.+++|.+|++.+|.|..+...+..+++|++|++++| .++.+ .++..+..|+.|++++|. +..+. ++..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence 55667777777777777766555667777777777777 66666 346666777777777776 55553 3555666666
Q ss_pred CCcEEecc
Q 007616 243 LAKFVVGK 250 (596)
Q Consensus 243 L~~~~~~~ 250 (596)
+++.++..
T Consensus 167 l~l~~n~i 174 (414)
T KOG0531|consen 167 LDLSYNRI 174 (414)
T ss_pred ccCCcchh
Confidence 66555443
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=7.7e-05 Score=74.12 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=56.0
Q ss_pred ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
+..+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+. .+|++|++++|..+..+|.++..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccce
Confidence 4557899999999999999983 234799999999988888887663 68999999999668888875433
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=9.2e-06 Score=87.55 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=96.6
Q ss_pred cCCCcEEeecCCCc-c-cccccc-ccCCcCcEEEcccccccc-ccCCcccCCCccceeecCCCCccccccccccCCcccC
Q 007616 166 LKHLRYLDFSHTAI-E-VLSESV-STLYNLQTLILEYCYRLK-KLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 241 (596)
Q Consensus 166 l~~L~~L~L~~~~i-~-~lp~~i-~~l~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~ 241 (596)
-.+|+.||+++... . .-|..+ ..||+|+.|.+++-.... ++-.-..++++|..||+|++. +..+ .++++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 35788888887632 2 223444 358888888888742211 122224577888888888888 7777 6788888888
Q ss_pred CCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCH--hhHHHHhcCCccccccccccccCCcchhhhhccCCCCCc
Q 007616 242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDA--EDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGL 319 (596)
Q Consensus 242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 319 (596)
.|.+.+........+.++-+|++|+ .|+++.-...... .......-..+++|+.|+.++........-..+...++|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLR-VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCC-eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 8887777776666677777777777 7777664443332 222223344567777777775543222222333445555
Q ss_pred cEEEEe
Q 007616 320 KELKVR 325 (596)
Q Consensus 320 ~~L~l~ 325 (596)
+.+..-
T Consensus 278 ~~i~~~ 283 (699)
T KOG3665|consen 278 QQIAAL 283 (699)
T ss_pred hhhhhh
Confidence 555433
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=2.7e-06 Score=87.58 Aligned_cols=110 Identities=25% Similarity=0.227 Sum_probs=73.9
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCccccccccccC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
.+..++.-++.|+.|||++|+++... .+..|++|++|||++| .+..+|.- ...+ +|+.|.+++|. ++.+ .++.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL-~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNA-LTTL-RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccH-HHhh-hhHHh
Confidence 34455566777888888888887664 5777888888888888 77777642 1223 38888888887 6666 45788
Q ss_pred CcccCCCCcEEeccCCCCCchhccchhhccceEEEcC
Q 007616 237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISG 273 (596)
Q Consensus 237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~ 273 (596)
|.+|+.||++++-......+.-+..|..|+ .+.+.+
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~-~L~LeG 288 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLI-VLWLEG 288 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHH-HHhhcC
Confidence 888888887776655555555555555555 444443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=1.6e-05 Score=73.45 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=53.2
Q ss_pred cccCCCcEEeecCCCcc---ccccccccCCcCcEEEccccccccccCCcc-cCCCccceeecCCCCcccc--ccccccCC
Q 007616 164 AELKHLRYLDFSHTAIE---VLSESVSTLYNLQTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLEE--MPLRIGKL 237 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~l~~--lp~~l~~l 237 (596)
....+++.|||.+|.|+ ++-..+.+++.|++|+++.| .+...-... ..+.+|+.|-+.++. +.. .-..+..+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDL 145 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcc
Confidence 34678888999999887 34445578899999999888 332211111 245688888888776 322 22335666
Q ss_pred cccCCCCcEEe
Q 007616 238 TSLRTLAKFVV 248 (596)
Q Consensus 238 ~~L~~L~~~~~ 248 (596)
+.+++|.++.+
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 77777766544
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.60 E-value=1.5e-05 Score=82.19 Aligned_cols=95 Identities=27% Similarity=0.325 Sum_probs=75.0
Q ss_pred ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616 165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 244 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 244 (596)
.+..++.++++.|.+..+-..++.+++|+.|++.+| .+..+...+..+++|++|++++|. ++.+. ++..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheeccccc-ccccc-chhhccchhhhe
Confidence 466777778888888876566888999999999999 888886558899999999999999 88874 588888899999
Q ss_pred cEEeccCCCCCchhccch
Q 007616 245 KFVVGKGNCSGLKELRSL 262 (596)
Q Consensus 245 ~~~~~~~~~~~l~~l~~L 262 (596)
+.++.+.....+..+..+
T Consensus 147 l~~N~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSL 164 (414)
T ss_pred eccCcchhccCCccchhh
Confidence 877766554444443333
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.42 E-value=1.4e-05 Score=75.68 Aligned_cols=188 Identities=21% Similarity=0.189 Sum_probs=111.3
Q ss_pred ccccccCCCcEEeecCCCcc-c----cccccccCCcCcEEEccccccccccC--------------CcccCCCccceeec
Q 007616 161 NDIAELKHLRYLDFSHTAIE-V----LSESVSTLYNLQTLILEYCYRLKKLF--------------PDIGNLVNLRHLKD 221 (596)
Q Consensus 161 ~~~~~l~~L~~L~L~~~~i~-~----lp~~i~~l~~L~~L~L~~~~~~~~lp--------------~~i~~L~~L~~L~l 221 (596)
+.+...++|++||||+|-+. . +-.-+..+..|+.|.|.+| .++..- .-+++-++|+++..
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 33445668888888888665 2 2234566778888888888 443211 11334456666666
Q ss_pred CCCCccccccc-----cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccccc
Q 007616 222 SHSNLLEEMPL-----RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEA 296 (596)
Q Consensus 222 ~~~~~l~~lp~-----~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~ 296 (596)
..|. +..-+. .+...+.|+.+.+..+++ ...........+..+++|+.
T Consensus 165 ~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I--------------------------~~eG~~al~eal~~~~~Lev 217 (382)
T KOG1909|consen 165 GRNR-LENGGATALAEAFQSHPTLEEVRLSQNGI--------------------------RPEGVTALAEALEHCPHLEV 217 (382)
T ss_pred eccc-cccccHHHHHHHHHhccccceEEEecccc--------------------------cCchhHHHHHHHHhCCccee
Confidence 6665 443322 122333333333322221 11122455666888899999
Q ss_pred ccccccCCc---chhhhhccCCCCCccEEEEeccCCCC-----CCCCCCCCCCCCccEEEEecCCCCCC----CC-CCCC
Q 007616 297 LSPKWGNKI---QTCVFEMLKPHYGLKELKVRGYGGTK-----FPAWLGQSSFENLVVLRFKNCNQCTT----LP-SVGH 363 (596)
Q Consensus 297 L~l~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~----l~-~l~~ 363 (596)
|++..+... .......+..+++|+.|++++|.... +...+.. ..++|+.|.+.+|..... +. .++.
T Consensus 218 Ldl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~-~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 218 LDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE-SAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred eecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc-cCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 999877542 22234556677889999999886432 1112222 478999999999885422 11 3556
Q ss_pred CCccceeeccCccC
Q 007616 364 LPSLKNLVIKGMAK 377 (596)
Q Consensus 364 l~~L~~L~L~~~~~ 377 (596)
.|.|+.|+|++|..
T Consensus 297 k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRL 310 (382)
T ss_pred chhhHHhcCCcccc
Confidence 89999999999863
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.18 E-value=9.5e-06 Score=83.74 Aligned_cols=92 Identities=25% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc-ccCCcccCCCCc
Q 007616 167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK 245 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~ 245 (596)
..|.+.++++|.+..+..++.-++.|+.|||+.| ++... +.+..+.+|++||+++|. ++.+|.- ...+ +|+.|.+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhh-HHHHhcccccccccccch-hccccccchhhh-hheeeee
Confidence 4688899999999988889999999999999999 66666 378999999999999999 8888863 2223 3777877
Q ss_pred EEeccCCCCCchhccch
Q 007616 246 FVVGKGNCSGLKELRSL 262 (596)
Q Consensus 246 ~~~~~~~~~~l~~l~~L 262 (596)
.++......++..+.+|
T Consensus 240 rnN~l~tL~gie~LksL 256 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSL 256 (1096)
T ss_pred cccHHHhhhhHHhhhhh
Confidence 66655444444333333
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.11 E-value=4.2e-05 Score=62.54 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=56.5
Q ss_pred ccccCCCcEEeecCCCccccccccc-cCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVS-TLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 241 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~ 241 (596)
+.+..+|...+|++|.+..+|+.+. ..+.+++|++++| .+.++|.++..++.|+.|+++.|. +...|.-+..|.+|-
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHH
Confidence 3455667777777777777776664 3447777777777 777777777777777777777777 666666666666666
Q ss_pred CCCc
Q 007616 242 TLAK 245 (596)
Q Consensus 242 ~L~~ 245 (596)
.|+.
T Consensus 127 ~Lds 130 (177)
T KOG4579|consen 127 MLDS 130 (177)
T ss_pred HhcC
Confidence 6653
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.84 E-value=0.00016 Score=59.26 Aligned_cols=86 Identities=19% Similarity=0.316 Sum_probs=71.3
Q ss_pred eeEEEEecccccccccccccccCcccc-cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCc
Q 007616 137 LRHLSYLTSRFDGIKRFEGLHELPNDI-AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215 (596)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~l~~lp~~~-~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~ 215 (596)
+..+++.++.+. .+|+.| .+++.+..|++++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+
T Consensus 55 l~~i~ls~N~fk---------~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 55 LTKISLSDNGFK---------KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIK 124 (177)
T ss_pred EEEEecccchhh---------hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHh
Confidence 445566665554 466666 4566899999999999999999999999999999999 88888888888999
Q ss_pred cceeecCCCCcccccccc
Q 007616 216 LRHLKDSHSNLLEEMPLR 233 (596)
Q Consensus 216 L~~L~l~~~~~l~~lp~~ 233 (596)
|-.|+..++. ..++|..
T Consensus 125 l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 125 LDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhcCCCCc-cccCcHH
Confidence 9999999888 6777755
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.80 E-value=0.00022 Score=65.31 Aligned_cols=193 Identities=21% Similarity=0.213 Sum_probs=107.0
Q ss_pred ccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEcccccccc----ccCC-------cccCCCccceeecCCCCc
Q 007616 163 IAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRLK----KLFP-------DIGNLVNLRHLKDSHSNL 226 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~----~lp~-------~i~~L~~L~~L~l~~~~~ 226 (596)
+..+..+..++||+|.|. .+...|.+-.+|+..+++.- ..+ .+|+ .+-++++|+..++|+|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344678888899998876 34455667788888888764 222 2332 355788999999999885
Q ss_pred ccccccc----ccCCcccCCCCcEEeccCCCCC--c-hhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccc
Q 007616 227 LEEMPLR----IGKLTSLRTLAKFVVGKGNCSG--L-KELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSP 299 (596)
Q Consensus 227 l~~lp~~----l~~l~~L~~L~~~~~~~~~~~~--l-~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 299 (596)
-...|+. |++-+.|.+|.+.+++.....+ + +.+.+|...+ .....+.|+....
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK--------------------Kaa~kp~Le~vic 164 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK--------------------KAADKPKLEVVIC 164 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh--------------------hhccCCCceEEEe
Confidence 5555544 5667788888887776643221 1 1222222221 1223344444443
Q ss_pred cccCC---cchhhhhccCCCCCccEEEEeccCCCCC----CCCCCCCCCCCccEEEEecCCCCCCCC-----CCCCCCcc
Q 007616 300 KWGNK---IQTCVFEMLKPHYGLKELKVRGYGGTKF----PAWLGQSSFENLVVLRFKNCNQCTTLP-----SVGHLPSL 367 (596)
Q Consensus 300 ~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~l~-----~l~~l~~L 367 (596)
..+.. ........+....+|+.+.+..|.+..- -...+...+++|+.|++.+|.....-. .+..-+.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 33321 1112223344446777777777653211 001111245677778877776432111 23344567
Q ss_pred ceeeccCcc
Q 007616 368 KNLVIKGMA 376 (596)
Q Consensus 368 ~~L~L~~~~ 376 (596)
+.|.+.+|-
T Consensus 245 rEL~lnDCl 253 (388)
T COG5238 245 RELRLNDCL 253 (388)
T ss_pred hhccccchh
Confidence 777777764
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00023 Score=66.13 Aligned_cols=83 Identities=19% Similarity=0.129 Sum_probs=51.9
Q ss_pred cccCCCcEEeecCCCccccc--ccc-ccCCcCcEEEcccccccc---ccCCcccCCCccceeecCCCCccccccccc-cC
Q 007616 164 AELKHLRYLDFSHTAIEVLS--ESV-STLYNLQTLILEYCYRLK---KLFPDIGNLVNLRHLKDSHSNLLEEMPLRI-GK 236 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp--~~i-~~l~~L~~L~L~~~~~~~---~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l-~~ 236 (596)
.....+..|-+.++.|...- ..| ..+..++.+||.+| .+. ++-..+.+|+.|++|+++.|. +...-..+ ..
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p 119 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLP 119 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCc-CCCccccCccc
Confidence 34445557777777776432 233 45788999999999 443 343446789999999999987 33321222 23
Q ss_pred CcccCCCCcEEe
Q 007616 237 LTSLRTLAKFVV 248 (596)
Q Consensus 237 l~~L~~L~~~~~ 248 (596)
+.+|++|-+.+.
T Consensus 120 ~~nl~~lVLNgT 131 (418)
T KOG2982|consen 120 LKNLRVLVLNGT 131 (418)
T ss_pred ccceEEEEEcCC
Confidence 456666654433
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.58 E-value=0.00019 Score=76.09 Aligned_cols=117 Identities=24% Similarity=0.240 Sum_probs=64.5
Q ss_pred cCCccccccccccccCCcchh-hhhccCCCCCccEEEEecc-CC-CCCC--CCCCCCCCCCccEEEEecCCCCCCCC--C
Q 007616 288 LNGKKKLEALSPKWGNKIQTC-VFEMLKPHYGLKELKVRGY-GG-TKFP--AWLGQSSFENLVVLRFKNCNQCTTLP--S 360 (596)
Q Consensus 288 l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~-~~-~~~~--~~~~~~~~~~L~~L~l~~~~~~~~l~--~ 360 (596)
...+++|+.+.+..+...... ........++|+.|+++++ .. ...+ .......+++|+.|++++|...++.- .
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 344677888877766543332 3344556778888888762 11 1111 00111245778888888777544332 2
Q ss_pred CC-CCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccc
Q 007616 361 VG-HLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEW 408 (596)
Q Consensus 361 l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 408 (596)
++ .+++|+.|.+.+|..++..+.... ...+++|++|+++.|..+
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i----~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSI----AERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHH----HHhcCcccEEeeecCccc
Confidence 22 367788887777765433322111 122667777777766654
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.39 E-value=0.0029 Score=55.70 Aligned_cols=82 Identities=27% Similarity=0.246 Sum_probs=44.8
Q ss_pred ccccCCCcEEeecCCCccccccccc-cCCcCcEEEccccccccccC--CcccCCCccceeecCCCCccccccc----ccc
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVS-TLYNLQTLILEYCYRLKKLF--PDIGNLVNLRHLKDSHSNLLEEMPL----RIG 235 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~l~ 235 (596)
|..++.|.+|.+++|+|+.+.+.+. .+++|+.|.+.+| .+.++- ..+..+++|++|.+-+|. +..-+. -+.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEE
Confidence 3455666666666666666644443 3455666666666 444332 124455666666666665 443322 145
Q ss_pred CCcccCCCCcE
Q 007616 236 KLTSLRTLAKF 246 (596)
Q Consensus 236 ~l~~L~~L~~~ 246 (596)
++++|++||..
T Consensus 138 klp~l~~LDF~ 148 (233)
T KOG1644|consen 138 KLPSLRTLDFQ 148 (233)
T ss_pred ecCcceEeehh
Confidence 56666666543
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.35 E-value=0.0018 Score=35.23 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=10.0
Q ss_pred CcEEeecCCCccccccccc
Q 007616 169 LRYLDFSHTAIEVLSESVS 187 (596)
Q Consensus 169 L~~L~L~~~~i~~lp~~i~ 187 (596)
|++||+++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.25 E-value=0.0037 Score=55.05 Aligned_cols=83 Identities=20% Similarity=0.335 Sum_probs=64.7
Q ss_pred CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccC-CCccceeecCCCCccccccc--cccCCcccCCC
Q 007616 167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGN-LVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTL 243 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L 243 (596)
.+...+||++|.+..++. +..++.|.+|.+++| .+..+-+.+.. +++|+.|.+.+|+ +.++.+ .+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 467789999999887653 778999999999999 78877666665 5679999999998 776543 26778888888
Q ss_pred CcEEeccCC
Q 007616 244 AKFVVGKGN 252 (596)
Q Consensus 244 ~~~~~~~~~ 252 (596)
.+.++....
T Consensus 119 tll~Npv~~ 127 (233)
T KOG1644|consen 119 TLLGNPVEH 127 (233)
T ss_pred eecCCchhc
Confidence 776665543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0025 Score=58.54 Aligned_cols=84 Identities=24% Similarity=0.231 Sum_probs=56.0
Q ss_pred ccccCCCcEEeecCC--Ccc-ccccccccCCcCcEEEccccccccccC--CcccCCCccceeecCCCCccccccc----c
Q 007616 163 IAELKHLRYLDFSHT--AIE-VLSESVSTLYNLQTLILEYCYRLKKLF--PDIGNLVNLRHLKDSHSNLLEEMPL----R 233 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~--~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~ 233 (596)
+..|++|+.|.++.| ++. .++.....+++|++|++++| .++.+- ..+..+.+|..|++.+|. ...+-. -
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~-~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS-VTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC-ccccccHHHHH
Confidence 345778999999988 555 56555566799999999998 554321 125677788888888887 443322 1
Q ss_pred ccCCcccCCCCcEEe
Q 007616 234 IGKLTSLRTLAKFVV 248 (596)
Q Consensus 234 l~~l~~L~~L~~~~~ 248 (596)
+.-+++|++|+...+
T Consensus 139 f~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHhhhhcccccccc
Confidence 445677777775444
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0004 Score=63.90 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=41.6
Q ss_pred cCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc--ccCCcccCCC
Q 007616 166 LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTL 243 (596)
Q Consensus 166 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~--l~~l~~L~~L 243 (596)
+.+.+.|++.++.+..+. .+.+++.|++|.|+-| .+..+ +.+..+++|+.|+|..|. +.++-+- +.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 344555566666555442 2345566666666665 55554 235556666666666555 4443221 4455556665
Q ss_pred CcEEe
Q 007616 244 AKFVV 248 (596)
Q Consensus 244 ~~~~~ 248 (596)
.+..+
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 55443
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.12 E-value=0.003 Score=68.47 Aligned_cols=34 Identities=41% Similarity=0.495 Sum_probs=17.0
Q ss_pred ccCCCcEEeecCCCccccccccccCCcCcEEEccc
Q 007616 165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEY 199 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 199 (596)
++++|+.||+|+++++.+ .++++|+|||+|.+++
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 444555555555555544 3445555555554443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.02 E-value=0.00075 Score=71.49 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=20.5
Q ss_pred CCCCEEEEeeccChhc-cC---CC-CCCcceEEecCCccc
Q 007616 431 SSLERIVITSCEQLLV-SY---TA-LPPLCELEIDGFSEL 465 (596)
Q Consensus 431 ~~L~~L~l~~c~~l~~-~~---~~-l~~L~~L~l~~c~~l 465 (596)
..++.|.+..|..... .+ .. +.+++.+++.+|..+
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 3378888888875421 11 11 556677777776644
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.86 E-value=0.0028 Score=58.25 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=55.6
Q ss_pred ccccCCCcEEeecCCCccccccccccCCcCcEEEcccc--ccccccCCcccCCCccceeecCCCCcccccccc---ccCC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYC--YRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR---IGKL 237 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~---l~~l 237 (596)
.-.+..|+.|++.+..++.+- .+..|++|++|.++.| .....++.-..++++|++|++++|. +.. +.. +.++
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhh
Confidence 344556666777666665442 2446889999999988 4445555556677999999999998 554 222 4555
Q ss_pred cccCCCCcEEecc
Q 007616 238 TSLRTLAKFVVGK 250 (596)
Q Consensus 238 ~~L~~L~~~~~~~ 250 (596)
.+|..|+++++..
T Consensus 116 ~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 116 ENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCc
Confidence 6666666655543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.73 E-value=0.0059 Score=33.21 Aligned_cols=21 Identities=29% Similarity=0.253 Sum_probs=11.4
Q ss_pred cCcEEEccccccccccCCcccC
Q 007616 191 NLQTLILEYCYRLKKLFPDIGN 212 (596)
Q Consensus 191 ~L~~L~L~~~~~~~~lp~~i~~ 212 (596)
+|++|++++| .++.+|+++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3556666666 45555555443
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.80 E-value=0.0032 Score=57.98 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=25.7
Q ss_pred cccCCcCcEEEccccccccccCCc----ccCCCccceeecCCCCcccccc
Q 007616 186 VSTLYNLQTLILEYCYRLKKLFPD----IGNLVNLRHLKDSHSNLLEEMP 231 (596)
Q Consensus 186 i~~l~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~~~~l~~lp 231 (596)
+-+|++|+..+||.|......|+. |.+-+.|.+|.+++|. ++.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 445666666666666444444433 4455667777777776 55443
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.68 E-value=0.022 Score=28.64 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=6.8
Q ss_pred CCcEEeecCCCccccc
Q 007616 168 HLRYLDFSHTAIEVLS 183 (596)
Q Consensus 168 ~L~~L~L~~~~i~~lp 183 (596)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666665555544
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.0025 Score=58.83 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=58.8
Q ss_pred cCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccc
Q 007616 188 TLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQE 267 (596)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~ 267 (596)
.+.+.+.|+..+| .+.++ ....+|+.|++|.|+-|. +..+.+ +..+++|++|++..+.+.+...+.-|.+++.|+
T Consensus 17 dl~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr- 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR- 91 (388)
T ss_pred HHHHhhhhcccCC-CccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh-
Confidence 3667788899999 77776 446789999999999998 777744 788999999988777665555555555566555
Q ss_pred eEEE
Q 007616 268 KLTI 271 (596)
Q Consensus 268 ~l~i 271 (596)
.|.+
T Consensus 92 ~LWL 95 (388)
T KOG2123|consen 92 TLWL 95 (388)
T ss_pred hHhh
Confidence 4444
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.78 E-value=0.071 Score=26.79 Aligned_cols=16 Identities=50% Similarity=0.461 Sum_probs=6.5
Q ss_pred cCcEEEccccccccccC
Q 007616 191 NLQTLILEYCYRLKKLF 207 (596)
Q Consensus 191 ~L~~L~L~~~~~~~~lp 207 (596)
+|+.|++++| .++.+|
T Consensus 2 ~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCC-CCCCCc
Confidence 4555555555 344443
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.02 E-value=0.0072 Score=54.39 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=67.4
Q ss_pred ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 242 (596)
+..++...+||++.|++..+-..++-+..|..|+++.+ .+..+|.+++.+..++++++..|. ....|.+.++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence 45667788888888888777777778888888888888 788888888888888888888777 7888888888888888
Q ss_pred CCcEE
Q 007616 243 LAKFV 247 (596)
Q Consensus 243 L~~~~ 247 (596)
++.-.
T Consensus 116 ~e~k~ 120 (326)
T KOG0473|consen 116 NEQKK 120 (326)
T ss_pred hhhcc
Confidence 87543
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.00 E-value=0.22 Score=28.20 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=11.8
Q ss_pred CCCcEEeecCCCccccccc
Q 007616 167 KHLRYLDFSHTAIEVLSES 185 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~ 185 (596)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.00 E-value=0.22 Score=28.20 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=11.8
Q ss_pred CCCcEEeecCCCccccccc
Q 007616 167 KHLRYLDFSHTAIEVLSES 185 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~ 185 (596)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.40 E-value=0.42 Score=27.00 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=11.1
Q ss_pred CccceeecCCCCcccccccc
Q 007616 214 VNLRHLKDSHSNLLEEMPLR 233 (596)
Q Consensus 214 ~~L~~L~l~~~~~l~~lp~~ 233 (596)
++|++|++++|. +..+|.+
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455666666665 5565554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.40 E-value=0.42 Score=27.00 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=11.1
Q ss_pred CccceeecCCCCcccccccc
Q 007616 214 VNLRHLKDSHSNLLEEMPLR 233 (596)
Q Consensus 214 ~~L~~L~l~~~~~l~~lp~~ 233 (596)
++|++|++++|. +..+|.+
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455666666665 5565554
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.84 E-value=2.1 Score=35.60 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=38.2
Q ss_pred cCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCC
Q 007616 288 LNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLP 365 (596)
Q Consensus 288 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~ 365 (596)
+.++.+|+.+.+... ...-....+..+++|+.+.+.+. ...++.... ..+++++.+.+.+ ....++ .+..++
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F-~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF-SNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTT-TT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeee-ecccccccccccc--cccccccccccccc
Confidence 444555665555321 11111223444556777777653 444443332 1455677777754 223333 355567
Q ss_pred ccceeeccCccCceEeCccc
Q 007616 366 SLKNLVIKGMAKVKSVGLEF 385 (596)
Q Consensus 366 ~L~~L~L~~~~~l~~~~~~~ 385 (596)
+|+.+.+.. .+..++...
T Consensus 82 ~l~~i~~~~--~~~~i~~~~ 99 (129)
T PF13306_consen 82 NLKNIDIPS--NITEIGSSS 99 (129)
T ss_dssp TECEEEETT--T-BEEHTTT
T ss_pred cccccccCc--cccEEchhh
Confidence 777777754 244554443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=0.19 Score=44.60 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=51.3
Q ss_pred CCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccC-Cccc-CCCccceeecCCCCccccccc-cccCCcccCC
Q 007616 167 KHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-PDIG-NLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRT 242 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~~i~-~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~ 242 (596)
..++.+|-+++.|... -.-+..++.++.|.+.+|..+..-- +.++ -.++|+.|++++|..+++-.- .+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3577888888877732 2456788888889998886554211 1122 347899999999987776321 2555566666
Q ss_pred CCc
Q 007616 243 LAK 245 (596)
Q Consensus 243 L~~ 245 (596)
|.+
T Consensus 181 L~l 183 (221)
T KOG3864|consen 181 LHL 183 (221)
T ss_pred HHh
Confidence 553
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.66 E-value=0.18 Score=44.78 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=19.7
Q ss_pred CCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccc
Q 007616 364 LPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEW 408 (596)
Q Consensus 364 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 408 (596)
.++|+.|+|++|+.++.-+.... ..|++|+.|.+.+++.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L-----~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACL-----LKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechhHHHHH-----HHhhhhHHHHhcCchhh
Confidence 35555556655555544433221 12555555555554433
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.69 E-value=0.98 Score=25.52 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=6.9
Q ss_pred CCCCeeecCCCCCCc
Q 007616 535 TSLERLELPRCPVLR 549 (596)
Q Consensus 535 ~~L~~L~l~~c~~l~ 549 (596)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 344444444444443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.86 E-value=0.088 Score=47.67 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=59.0
Q ss_pred CcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccc
Q 007616 159 LPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEE 229 (596)
Q Consensus 159 lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~ 229 (596)
+-..|..+..|..|+++.|.+..+|..++.+..++.+++..| .....|.+.++++.+++++..++.+...
T Consensus 57 ~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 57 LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhccCcchHH
Confidence 334566778888899999999999999999999999999888 7888999999999999999988874333
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.82 E-value=1.7 Score=24.58 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=11.6
Q ss_pred CCcEEeecCCCcccccc
Q 007616 168 HLRYLDFSHTAIEVLSE 184 (596)
Q Consensus 168 ~L~~L~L~~~~i~~lp~ 184 (596)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777776665
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=71.99 E-value=6.4 Score=32.59 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=31.5
Q ss_pred ccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-ccCCcc
Q 007616 163 IAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTS 239 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~ 239 (596)
|..+++|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..++.. +.++++|+.+.+.+ . +..++.. +..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-c-cccccccccccccc
Confidence 45555666666653 344443 23555666666666553 4444332 45555666666644 2 3344433 333455
Q ss_pred cCCCC
Q 007616 240 LRTLA 244 (596)
Q Consensus 240 L~~L~ 244 (596)
|+.+.
T Consensus 83 l~~i~ 87 (129)
T PF13306_consen 83 LKNID 87 (129)
T ss_dssp ECEEE
T ss_pred ccccc
Confidence 54443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.01 E-value=3.2 Score=23.52 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=9.0
Q ss_pred CCCcEEeecCCCccc
Q 007616 167 KHLRYLDFSHTAIEV 181 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~ 181 (596)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666653
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.33 E-value=3.5 Score=22.59 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=6.3
Q ss_pred CCCcEEeecCCCcc
Q 007616 167 KHLRYLDFSHTAIE 180 (596)
Q Consensus 167 ~~L~~L~L~~~~i~ 180 (596)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555544
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.72 E-value=9.1 Score=22.02 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=9.6
Q ss_pred CCCcEEeecCCCcc
Q 007616 167 KHLRYLDFSHTAIE 180 (596)
Q Consensus 167 ~~L~~L~L~~~~i~ 180 (596)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777665
No 89
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=43.51 E-value=45 Score=21.56 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=22.8
Q ss_pred CCCCeeecCCCCCCccCCCCCCCCCccEEEEec
Q 007616 535 TSLERLELPRCPVLRSFPENVLPPSLVYLSIYL 567 (596)
Q Consensus 535 ~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~ 567 (596)
+++++|.+.+ .--..+..+.+|++|+.|.+..
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEeeC
Confidence 4788888844 2334556677789999998864
No 90
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=37.24 E-value=1.1e+02 Score=26.19 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=36.9
Q ss_pred HHHHhhhhhhhhHHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 007616 20 GALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSR 87 (596)
Q Consensus 20 ~~L~lSY~~L~~~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~ 87 (596)
.-+--+|..|..+.|-.|+| ..-.||++|.|-....+.++-+.+..++.....-
T Consensus 86 t~isR~Y~~ls~n~KL~fWY--------------~Lae~M~~G~VipvP~~Y~ls~~a~~vl~~I~~L 139 (159)
T PF09150_consen 86 TPISRAYGALSANTKLGFWY--------------QLAEGMEQGTVIPVPSGYQLSENANEVLEAIKQL 139 (159)
T ss_dssp -HHHHHHHCC-HHHHHHHHH--------------HHHHHHHTTSS--S-TT----HHHHHHHHHHHCS
T ss_pred CHHHHHHhccCCcchHHHHH--------------HHHHHhcCCcEecCCCCCCcCHHHHHHHHHHHcC
Confidence 45677899999999999999 3457999999988778888888888888776654
No 91
>PF13730 HTH_36: Helix-turn-helix domain
Probab=30.91 E-value=1.6e+02 Score=19.80 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=31.1
Q ss_pred hhhhHHHHHHhHhccCCCCc--cc-CHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCcc
Q 007616 28 CLLSYVKRCFAYCSFLPKGY--RF-DERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFF 90 (596)
Q Consensus 28 ~L~~~lk~cfl~~a~fpe~~--~i-~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll 90 (596)
+|.+..|..+++++-|..+. .. +.+++.+. . +.+ +.....++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~-~----------g~s-~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKD-L----------GVS-RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHH-H----------CcC-HHHHHHHHHHHHHCcCC
Confidence 56777888888876664322 11 23333221 1 112 56788899999999875
No 92
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=21.87 E-value=1.6e+02 Score=22.04 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCccceecCCCCeEE
Q 007616 33 VKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFL 101 (596)
Q Consensus 33 lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~~~~~~~~~~~ 101 (596)
.=++..|+|..+++..+..+++.+. ..-.+.....+++.|...+++.......+.+.
T Consensus 10 Al~~l~~la~~~~~~~~s~~eiA~~------------~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~ 66 (83)
T PF02082_consen 10 ALRILLYLARHPDGKPVSSKEIAER------------LGISPSYLRKILQKLKKAGLIESSRGRGGGYR 66 (83)
T ss_dssp HHHHHHHHHCTTTSC-BEHHHHHHH------------HTS-HHHHHHHHHHHHHTTSEEEETSTTSEEE
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHH------------HCcCHHHHHHHHHHHhhCCeeEecCCCCCcee
Confidence 3456788888888776787776552 12245678889999999999987653234443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.50 E-value=35 Score=35.71 Aligned_cols=68 Identities=18% Similarity=0.043 Sum_probs=31.9
Q ss_pred ccccccccccccCCcchhhhhccC-CCCCccEEEEeccC--CCCCCCCCCCCCCCCccEEEEecCCCCCCCC
Q 007616 291 KKKLEALSPKWGNKIQTCVFEMLK-PHYGLKELKVRGYG--GTKFPAWLGQSSFENLVVLRFKNCNQCTTLP 359 (596)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~ 359 (596)
.+.+..+.++.+.....+.+..+. ..|+|+.|+|++|. ... ..++..-....|++|-+.+|+.++.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCccccchh
Confidence 344445555544433333333222 24667777777662 111 111221134456667777776665543
Done!