Query 007616
Match_columns 596
No_of_seqs 455 out of 3737
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 06:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.6E-31 1.9E-35 292.2 9.7 382 159-592 310-765 (768)
2 4eco_A Uncharacterized protein 100.0 2.2E-29 7.4E-34 273.1 16.3 340 181-570 197-599 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2.5E-28 8.5E-33 269.2 18.8 345 159-570 440-839 (876)
4 3rgz_A Protein brassinosteroid 100.0 5E-28 1.7E-32 268.5 18.5 425 109-570 30-550 (768)
5 3t6q_A CD180 antigen; protein- 99.9 9.3E-27 3.2E-31 252.4 24.7 110 132-250 30-141 (606)
6 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-26 7.4E-31 249.5 25.8 377 160-569 73-556 (606)
7 3vq2_A TLR4, TOLL-like recepto 99.9 5.2E-26 1.8E-30 246.5 27.7 399 133-569 30-532 (606)
8 4ecn_A Leucine-rich repeat pro 99.9 3.8E-27 1.3E-31 259.8 17.6 361 126-570 315-818 (876)
9 3j0a_A TOLL-like receptor 5; m 99.9 3.6E-25 1.2E-29 248.1 32.2 142 312-463 285-437 (844)
10 2z63_A TOLL-like receptor 4, v 99.9 1.2E-25 3.9E-30 242.1 23.5 388 133-569 26-529 (570)
11 2z7x_B TOLL-like receptor 1, v 99.9 2.6E-25 9E-30 236.3 22.8 372 133-569 19-479 (520)
12 1o6v_A Internalin A; bacterial 99.9 4.7E-25 1.6E-29 230.6 24.1 339 135-569 46-386 (466)
13 2z81_A CD282 antigen, TOLL-lik 99.9 3E-25 1E-29 237.6 19.7 410 133-569 24-508 (549)
14 1ziw_A TOLL-like receptor 3; i 99.9 4.4E-24 1.5E-28 234.5 29.3 249 133-404 23-305 (680)
15 3t6q_A CD180 antigen; protein- 99.9 1.2E-24 4E-29 235.9 21.7 138 158-303 26-164 (606)
16 2z81_A CD282 antigen, TOLL-lik 99.9 2E-25 6.9E-30 239.0 15.1 391 158-568 19-483 (549)
17 4eco_A Uncharacterized protein 99.9 3E-25 1E-29 240.5 13.7 385 126-570 73-578 (636)
18 1ziw_A TOLL-like receptor 3; i 99.9 8.4E-24 2.9E-28 232.3 25.3 107 135-250 49-157 (680)
19 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-23 7.3E-28 216.3 26.3 315 160-568 35-349 (457)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.5E-23 8.6E-28 223.0 25.8 117 133-262 50-169 (562)
21 2z63_A TOLL-like receptor 4, v 99.9 2.8E-23 9.7E-28 223.4 21.6 350 160-550 93-533 (570)
22 4fmz_A Internalin; leucine ric 99.9 1E-23 3.5E-28 211.9 15.9 301 164-569 41-344 (347)
23 1o6v_A Internalin A; bacterial 99.9 6.7E-23 2.3E-27 214.3 20.4 320 164-569 43-364 (466)
24 2z7x_B TOLL-like receptor 1, v 99.9 5.8E-23 2E-27 218.2 19.8 370 158-569 14-455 (520)
25 3v47_A TOLL-like receptor 5B a 99.9 2.2E-23 7.4E-28 217.7 14.9 344 134-568 29-405 (455)
26 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-22 4.8E-27 210.2 20.5 344 135-554 42-393 (457)
27 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-22 5.5E-27 226.6 22.5 305 122-463 13-373 (844)
28 4g8a_A TOLL-like receptor 4; l 99.9 7.3E-22 2.5E-26 215.3 27.2 109 132-251 49-161 (635)
29 2id5_A Lingo-1, leucine rich r 99.9 4.8E-22 1.6E-26 208.7 23.4 204 158-404 25-233 (477)
30 4fmz_A Internalin; leucine ric 99.9 5.7E-22 1.9E-26 199.1 19.8 276 135-463 44-322 (347)
31 3o6n_A APL1; leucine-rich repe 99.9 5.5E-22 1.9E-26 202.5 19.6 105 135-250 45-153 (390)
32 3o6n_A APL1; leucine-rich repe 99.9 5.7E-22 1.9E-26 202.4 18.3 299 164-569 42-350 (390)
33 1jl5_A Outer protein YOPM; leu 99.9 2.8E-22 9.6E-27 207.8 14.7 264 158-463 25-308 (454)
34 1jl5_A Outer protein YOPM; leu 99.9 2.8E-21 9.7E-26 200.2 20.0 258 165-463 9-288 (454)
35 2id5_A Lingo-1, leucine rich r 99.9 3.1E-21 1.1E-25 202.5 19.9 292 132-463 29-331 (477)
36 3v47_A TOLL-like receptor 5B a 99.9 1.3E-21 4.3E-26 204.3 16.7 332 158-569 24-382 (455)
37 3oja_B Anopheles plasmodium-re 99.9 2.9E-21 1E-25 208.1 17.8 298 165-569 49-356 (597)
38 3oja_B Anopheles plasmodium-re 99.9 4.4E-21 1.5E-25 206.6 19.1 265 158-463 65-335 (597)
39 4fcg_A Uncharacterized protein 99.9 3E-21 1E-25 191.5 15.3 226 166-462 80-311 (328)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.7E-21 2.6E-25 203.6 19.6 358 135-569 76-508 (562)
41 4fcg_A Uncharacterized protein 99.9 6.6E-21 2.3E-25 189.0 17.0 198 134-405 80-287 (328)
42 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-21 5.1E-26 192.5 9.0 261 124-407 37-303 (313)
43 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-19 4.8E-24 197.2 19.9 140 156-304 43-185 (635)
44 1xku_A Decorin; proteoglycan, 99.8 2.3E-19 7.7E-24 178.7 18.6 179 158-376 45-227 (330)
45 2ft3_A Biglycan; proteoglycan, 99.8 8.2E-19 2.8E-23 174.7 16.8 268 167-463 54-331 (332)
46 1xku_A Decorin; proteoglycan, 99.8 8.9E-19 3E-23 174.4 16.9 268 133-462 50-329 (330)
47 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-20 5.2E-25 185.3 3.6 243 167-465 50-304 (313)
48 3g06_A SSPH2 (leucine-rich rep 99.8 3.6E-18 1.2E-22 182.4 21.4 219 158-463 54-272 (622)
49 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-18 4.7E-23 173.1 16.1 287 167-546 33-331 (332)
50 2z66_A Variable lymphocyte rec 99.8 3E-19 1E-23 175.7 9.8 201 167-376 28-234 (306)
51 2z80_A TOLL-like receptor 2, v 99.8 8.7E-19 3E-23 176.2 12.9 83 158-244 45-130 (353)
52 3g06_A SSPH2 (leucine-rich rep 99.8 2E-17 6.9E-22 176.6 22.6 257 167-547 40-296 (622)
53 2z80_A TOLL-like receptor 2, v 99.8 1.7E-18 5.6E-23 174.1 13.0 197 166-404 30-231 (353)
54 3zyi_A Leucine-rich repeat-con 99.7 2E-17 6.8E-22 172.0 18.3 181 158-375 68-252 (452)
55 3zyj_A Leucine-rich repeat-con 99.7 2.6E-17 9.1E-22 170.5 18.6 182 158-376 57-242 (440)
56 1z7x_W Ribonuclease inhibitor; 99.7 1E-20 3.4E-25 197.8 -8.5 377 135-568 3-437 (461)
57 3ogk_B Coronatine-insensitive 99.7 4.3E-19 1.5E-23 191.6 -0.2 367 165-569 110-524 (592)
58 2z66_A Variable lymphocyte rec 99.7 1.9E-17 6.6E-22 162.8 9.8 224 133-376 26-259 (306)
59 3zyi_A Leucine-rich repeat-con 99.7 1.1E-16 3.7E-21 166.4 16.0 224 133-406 73-301 (452)
60 3zyj_A Leucine-rich repeat-con 99.7 1.5E-16 5.2E-21 164.7 15.7 224 133-406 62-290 (440)
61 3o53_A Protein LRIM1, AGAP0063 99.7 7.2E-19 2.4E-23 173.8 -2.2 210 163-463 30-248 (317)
62 3ogk_B Coronatine-insensitive 99.7 7.5E-19 2.6E-23 189.7 -2.5 344 163-567 160-547 (592)
63 2xwt_C Thyrotropin receptor; s 99.7 1.3E-16 4.3E-21 150.8 12.3 207 156-406 23-237 (239)
64 1wwl_A Monocyte differentiatio 99.7 1E-16 3.5E-21 157.9 12.1 82 165-248 93-183 (312)
65 2p1m_B Transport inhibitor res 99.7 2.1E-19 7.1E-24 194.2 -9.6 203 164-375 102-324 (594)
66 4ay9_X Follicle-stimulating ho 99.6 3.9E-15 1.3E-19 149.1 19.1 170 170-404 12-186 (350)
67 1ozn_A Reticulon 4 receptor; N 99.6 1.1E-16 3.8E-21 155.6 7.3 182 161-377 50-237 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.6 9.2E-17 3.1E-21 158.6 6.5 212 135-404 34-246 (317)
69 1ozn_A Reticulon 4 receptor; N 99.6 7.2E-16 2.5E-20 149.8 12.1 205 158-404 25-234 (285)
70 1h6u_A Internalin H; cell adhe 99.6 5.5E-16 1.9E-20 152.2 11.0 169 163-375 59-227 (308)
71 4ay9_X Follicle-stimulating ho 99.6 2.2E-15 7.4E-20 150.9 14.9 226 158-440 23-255 (350)
72 3oja_A Leucine-rich immune mol 99.6 2.3E-16 7.7E-21 165.0 8.0 219 159-404 22-246 (487)
73 2o6q_A Variable lymphocyte rec 99.6 9.8E-15 3.3E-19 140.5 18.0 85 158-246 30-117 (270)
74 1z7x_W Ribonuclease inhibitor; 99.6 3E-19 1E-23 186.6 -15.0 358 167-569 3-409 (461)
75 2z62_A TOLL-like receptor 4, v 99.6 1.5E-15 5.1E-20 146.8 11.2 85 158-246 21-108 (276)
76 1wwl_A Monocyte differentiatio 99.6 6.3E-16 2.2E-20 152.2 8.1 229 158-404 56-305 (312)
77 2z62_A TOLL-like receptor 4, v 99.6 4.7E-15 1.6E-19 143.3 12.5 202 133-376 26-235 (276)
78 1p9a_G Platelet glycoprotein I 99.6 1.2E-14 4.1E-19 141.2 15.2 83 313-404 120-204 (290)
79 3rfs_A Internalin B, repeat mo 99.6 6.6E-15 2.3E-19 141.8 12.4 177 164-376 38-216 (272)
80 4glp_A Monocyte differentiatio 99.6 9.9E-15 3.4E-19 143.5 13.5 80 167-247 91-178 (310)
81 3oja_A Leucine-rich immune mol 99.6 1.8E-15 6.2E-20 158.2 8.4 234 135-403 34-270 (487)
82 2ast_B S-phase kinase-associat 99.6 2.4E-16 8.1E-21 157.3 0.5 85 162-247 63-151 (336)
83 2o6q_A Variable lymphocyte rec 99.6 9.1E-14 3.1E-18 133.7 18.6 148 167-375 16-167 (270)
84 2xwt_C Thyrotropin receptor; s 99.6 3.7E-14 1.3E-18 133.8 15.0 193 317-571 31-239 (239)
85 1p9a_G Platelet glycoprotein I 99.6 5E-14 1.7E-18 136.8 15.9 181 158-376 24-206 (290)
86 2p1m_B Transport inhibitor res 99.6 1.7E-17 6E-22 179.1 -9.9 102 136-246 106-219 (594)
87 1h6u_A Internalin H; cell adhe 99.5 2.4E-14 8.3E-19 140.4 13.1 167 135-354 63-229 (308)
88 2ca6_A RAN GTPase-activating p 99.5 2E-16 7E-21 160.9 -3.1 214 158-376 23-285 (386)
89 1h6t_A Internalin B; cell adhe 99.5 2.3E-14 7.8E-19 139.3 11.3 170 163-376 42-211 (291)
90 3rfs_A Internalin B, repeat mo 99.5 7.5E-14 2.6E-18 134.4 13.2 199 135-385 41-242 (272)
91 4ezg_A Putative uncharacterize 99.5 4.3E-14 1.5E-18 129.0 8.8 152 163-376 40-192 (197)
92 2ast_B S-phase kinase-associat 99.5 3.7E-15 1.3E-19 148.6 0.9 166 159-327 85-257 (336)
93 1m9s_A Internalin B; cell inva 99.5 1E-13 3.4E-18 147.9 11.4 170 163-376 39-208 (605)
94 2a5y_B CED-4; apoptosis; HET: 99.5 1.1E-14 3.9E-19 154.3 2.6 100 15-119 360-473 (549)
95 3m19_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 124.8 14.8 158 158-376 28-190 (251)
96 2ca6_A RAN GTPase-activating p 99.4 1.6E-15 5.3E-20 154.3 -5.5 250 167-463 9-314 (386)
97 4glp_A Monocyte differentiatio 99.4 2E-13 6.8E-18 134.2 8.1 101 137-246 93-205 (310)
98 1h6t_A Internalin B; cell adhe 99.4 9.9E-13 3.4E-17 127.7 11.2 167 135-354 46-212 (291)
99 3m19_A Variable lymphocyte rec 99.4 2.2E-12 7.5E-17 122.5 13.4 156 133-355 33-192 (251)
100 1xeu_A Internalin C; cellular 99.4 1.2E-12 4E-17 125.1 10.2 147 163-376 37-183 (263)
101 3goz_A Leucine-rich repeat-con 99.4 3.8E-14 1.3E-18 142.6 -0.3 213 159-376 14-264 (362)
102 3goz_A Leucine-rich repeat-con 99.4 7.1E-14 2.4E-18 140.6 0.2 249 171-463 2-295 (362)
103 2o6s_A Variable lymphocyte rec 99.3 4.4E-12 1.5E-16 116.7 11.2 160 158-384 21-184 (208)
104 3cvr_A Invasion plasmid antige 99.3 3.2E-12 1.1E-16 134.8 11.0 167 158-382 73-247 (571)
105 1xeu_A Internalin C; cellular 99.3 9.7E-13 3.3E-17 125.7 5.9 165 165-404 17-181 (263)
106 1m9s_A Internalin B; cell inva 99.3 3.8E-12 1.3E-16 135.7 10.7 154 158-355 57-210 (605)
107 4ezg_A Putative uncharacterize 99.3 1.3E-11 4.5E-16 112.3 12.1 103 135-248 44-146 (197)
108 2o6s_A Variable lymphocyte rec 99.3 1.6E-11 5.6E-16 112.8 12.4 161 170-404 10-174 (208)
109 2v9t_B SLIT homolog 2 protein 99.3 2E-11 7E-16 113.1 12.3 84 158-245 25-111 (220)
110 3e6j_A Variable lymphocyte rec 99.3 2.7E-11 9.1E-16 113.1 13.0 71 158-232 33-105 (229)
111 2v70_A SLIT-2, SLIT homolog 2 99.3 2.2E-11 7.5E-16 112.9 11.2 83 158-244 25-111 (220)
112 1dce_A Protein (RAB geranylger 99.3 8.6E-14 2.9E-18 147.5 -6.0 99 293-404 442-542 (567)
113 2v9t_B SLIT homolog 2 protein 99.2 3.7E-11 1.3E-15 111.4 11.9 146 170-376 14-163 (220)
114 2xot_A Amphoterin-induced prot 99.2 1.7E-11 5.9E-16 123.0 9.9 159 158-376 32-200 (361)
115 3e6j_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 111.0 12.0 146 169-376 21-170 (229)
116 3cvr_A Invasion plasmid antige 99.2 1.8E-11 6E-16 129.1 9.6 162 134-359 79-247 (571)
117 2v70_A SLIT-2, SLIT homolog 2 99.2 7.4E-11 2.5E-15 109.3 11.9 147 169-376 13-164 (220)
118 2ell_A Acidic leucine-rich nuc 99.2 1.4E-11 4.9E-16 109.0 6.4 78 166-246 23-103 (168)
119 2ell_A Acidic leucine-rich nuc 99.1 5.7E-11 1.9E-15 105.1 7.1 106 133-248 22-130 (168)
120 2je0_A Acidic leucine-rich nuc 99.1 3.6E-11 1.2E-15 104.0 3.8 105 134-249 16-124 (149)
121 2xot_A Amphoterin-induced prot 99.1 1.7E-10 5.7E-15 115.8 8.4 169 169-405 20-199 (361)
122 1vt4_I APAF-1 related killer D 99.1 9.2E-11 3.1E-15 127.4 6.7 85 15-111 352-437 (1221)
123 2je0_A Acidic leucine-rich nuc 99.1 3.8E-11 1.3E-15 103.8 3.0 82 165-249 15-99 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.1 1.2E-10 3.9E-15 103.9 6.1 79 165-247 17-97 (176)
125 4b8c_D Glucose-repressible alc 99.1 3.4E-11 1.2E-15 131.7 2.8 82 161-244 218-299 (727)
126 1ds9_A Outer arm dynein; leuci 99.1 4.8E-12 1.6E-16 115.4 -3.4 91 157-251 38-128 (198)
127 2wfh_A SLIT homolog 2 protein 99.0 6.3E-10 2.2E-14 100.6 9.1 63 167-231 31-94 (193)
128 3sb4_A Hypothetical leucine ri 99.0 2.4E-09 8.2E-14 105.9 12.5 75 166-243 48-153 (329)
129 1w8a_A SLIT protein; signaling 99.0 7.3E-10 2.5E-14 100.2 8.0 71 170-244 11-84 (192)
130 2wfh_A SLIT homolog 2 protein 99.0 8.8E-10 3E-14 99.6 8.2 107 133-250 29-138 (193)
131 4b8c_D Glucose-repressible alc 99.0 4.8E-10 1.6E-14 122.6 6.9 105 135-250 224-328 (727)
132 1dce_A Protein (RAB geranylger 98.9 7.9E-10 2.7E-14 117.1 7.4 87 158-248 455-543 (567)
133 1a9n_A U2A', U2A'; complex (nu 98.9 8E-10 2.7E-14 98.4 6.2 103 134-249 18-124 (176)
134 1w8a_A SLIT protein; signaling 98.9 1.5E-09 5.3E-14 98.0 8.1 106 135-250 29-138 (192)
135 2r9u_A Variable lymphocyte rec 98.9 1.2E-09 4.2E-14 96.8 7.0 89 158-250 26-117 (174)
136 1ds9_A Outer arm dynein; leuci 98.9 1.1E-11 3.8E-16 113.0 -7.0 79 169-250 25-105 (198)
137 3sfz_A APAF-1, apoptotic pepti 98.9 1.3E-09 4.6E-14 127.8 8.4 90 16-117 362-452 (1249)
138 3g39_A Variable lymphocyte rec 98.9 2.5E-09 8.5E-14 94.5 7.0 89 158-250 23-114 (170)
139 2o6r_A Variable lymphocyte rec 98.8 5.2E-09 1.8E-13 93.2 8.3 103 135-248 28-134 (177)
140 3sb4_A Hypothetical leucine ri 98.8 8.4E-10 2.9E-14 109.1 2.5 81 165-249 23-135 (329)
141 2o6r_A Variable lymphocyte rec 98.8 1.6E-08 5.5E-13 90.0 10.6 72 169-244 9-82 (177)
142 2r9u_A Variable lymphocyte rec 98.7 1.8E-08 6.3E-13 89.2 7.1 94 133-236 31-126 (174)
143 2ifg_A High affinity nerve gro 98.7 2.2E-08 7.4E-13 99.8 7.2 93 156-251 21-116 (347)
144 1z6t_A APAF-1, apoptotic prote 98.6 4.6E-08 1.6E-12 105.0 7.0 87 15-113 361-448 (591)
145 3g39_A Variable lymphocyte rec 98.6 1.5E-07 5.1E-12 82.9 8.8 88 133-230 28-117 (170)
146 4fdw_A Leucine rich hypothetic 98.4 2.9E-05 9.8E-10 78.4 20.7 192 163-403 132-331 (401)
147 2ifg_A High affinity nerve gro 98.2 3.9E-06 1.3E-10 83.3 9.3 74 170-246 11-88 (347)
148 4fs7_A Uncharacterized protein 98.2 8.7E-05 3E-09 74.9 18.7 36 530-567 338-375 (394)
149 4fdw_A Leucine rich hypothetic 98.1 3.4E-05 1.1E-09 77.8 15.4 192 163-404 154-354 (401)
150 2ra8_A Uncharacterized protein 98.0 3.9E-06 1.3E-10 83.2 4.6 168 158-353 130-318 (362)
151 3un9_A NLR family member X1; l 98.0 3.1E-07 1.1E-11 91.8 -3.5 158 166-353 71-250 (372)
152 3un9_A NLR family member X1; l 97.8 6.5E-07 2.2E-11 89.5 -4.2 136 167-330 101-252 (372)
153 4fs7_A Uncharacterized protein 97.8 0.00096 3.3E-08 67.2 19.2 55 185-243 66-122 (394)
154 3rw6_A Nuclear RNA export fact 97.8 1.3E-05 4.5E-10 75.2 4.4 80 164-245 167-258 (267)
155 3e4g_A ATP synthase subunit S, 97.7 1E-05 3.6E-10 70.2 2.3 91 158-248 52-149 (176)
156 3e4g_A ATP synthase subunit S, 97.7 1.1E-05 3.8E-10 70.1 1.7 86 136-229 62-154 (176)
157 1io0_A Tropomodulin; LRR prote 97.3 3.1E-05 1.1E-09 68.9 0.1 84 160-245 29-128 (185)
158 2ra8_A Uncharacterized protein 97.2 0.0001 3.4E-09 73.0 1.6 141 159-329 164-319 (362)
159 1io0_A Tropomodulin; LRR prote 97.1 5.7E-05 2E-09 67.2 -0.6 109 135-249 36-162 (185)
160 4gt6_A Cell surface protein; l 97.1 0.034 1.2E-06 55.7 19.5 37 530-568 329-367 (394)
161 4gt6_A Cell surface protein; l 97.1 0.0048 1.6E-07 62.0 12.9 102 340-463 263-368 (394)
162 3rw6_A Nuclear RNA export fact 96.8 0.00084 2.9E-08 62.9 4.3 79 136-221 171-258 (267)
163 4h09_A Hypothetical leucine ri 96.2 0.2 6.8E-06 49.6 17.9 33 429-461 284-319 (379)
164 3rfe_A Platelet glycoprotein I 95.2 0.023 8E-07 46.6 5.3 52 171-225 12-66 (130)
165 3rfe_A Platelet glycoprotein I 93.0 0.09 3.1E-06 43.0 4.3 41 158-200 24-65 (130)
166 4h09_A Hypothetical leucine ri 87.3 1.1 3.9E-05 44.1 7.4 79 163-245 236-317 (379)
167 1pgv_A TMD-1, tropomodulin TMD 86.2 0.27 9.1E-06 43.3 1.8 60 165-225 39-109 (197)
168 1pgv_A TMD-1, tropomodulin TMD 76.9 1.4 4.8E-05 38.6 2.9 66 159-225 62-137 (197)
169 1hqc_A RUVB; extended AAA-ATPa 29.3 9.4 0.00032 36.2 -0.6 76 17-92 233-324 (324)
170 2lz0_A Uncharacterized protein 21.7 1.1E+02 0.0039 22.9 4.4 15 530-544 38-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5.6e-31 Score=292.19 Aligned_cols=382 Identities=17% Similarity=0.107 Sum_probs=223.8
Q ss_pred CcccccccCCCcEEeecCCCcc-ccccc-cccCCcCcEEEccccccccccCCcccCCC-ccceeecCCCCcccccccccc
Q 007616 159 LPNDIAELKHLRYLDFSHTAIE-VLSES-VSTLYNLQTLILEYCYRLKKLFPDIGNLV-NLRHLKDSHSNLLEEMPLRIG 235 (596)
Q Consensus 159 lp~~~~~l~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~~~~~l~~lp~~l~ 235 (596)
+|..++.+++|++|++++|.+. .+|.. ++.+++|++|++++|.....+|..++++. +|++|++++|...+.+|..+.
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 4444555555555555555554 44433 45555555555555532234555555444 555555555543334444443
Q ss_pred C--CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616 236 K--LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML 313 (596)
Q Consensus 236 ~--l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 313 (596)
. +++|++|++.++.... .....+..++.|+ .+.+.+.. ..+..+..+..+++|+.|+++.+. .....+..+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~-~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~ 462 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTG-KIPPTLSNCSELV-SLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQEL 462 (768)
T ss_dssp CSTTCCCCEEECCSSEEEE-ECCGGGGGCTTCC-EEECCSSE----EESCCCGGGGGCTTCCEEECCSSC-CCSCCCGGG
T ss_pred hcccCCccEEECCCCcccc-ccCHHHhcCCCCC-EEECcCCc----ccCcccHHHhcCCCCCEEECCCCc-ccCcCCHHH
Confidence 3 4455555544333211 1122344444454 55554422 112223346667778888877665 334455566
Q ss_pred CCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCC
Q 007616 314 KPHYGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCS 391 (596)
Q Consensus 314 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 391 (596)
..+++|+.|++++|... .+|.++. .+++|+.|++++|...+.+| .++.+++|+.|++++|...+.++..+..
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~---- 536 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD---- 536 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG----
T ss_pred cCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC----
Confidence 67778888888888765 5666665 67888888888888666666 5778888888888888766677666554
Q ss_pred CCCCCcceeecccCccccccc-------------------eeEEec----------------------------------
Q 007616 392 EPFPSLETLCFEDMQEWEERI-------------------GLSIVR---------------------------------- 418 (596)
Q Consensus 392 ~~~~~L~~L~l~~~~~l~~~~-------------------~l~l~~---------------------------------- 418 (596)
+++|+.|++++++--..+. ...+.+
T Consensus 537 --l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 537 --CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp --CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred --CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 7888888887643211110 000000
Q ss_pred --CCCCCCCCC---CCCCCCCEEEEeecc---ChhccCCCCCCcceEEecCCcccceeeEecccccccccCCcccccccc
Q 007616 419 --CPKLKGRLP---QRFSSLERIVITSCE---QLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQ 490 (596)
Q Consensus 419 --c~~L~~~~p---~~l~~L~~L~l~~c~---~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p 490 (596)
.+.+.|.+| ..+++|+.|++++|. .++..+..+++|+.|++++|.. .+ .+|
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l-------~g--------------~ip 673 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI-------SG--------------SIP 673 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC-------CS--------------CCC
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc-------CC--------------CCC
Confidence 011112223 235677888887775 3456677788888888888762 21 466
Q ss_pred ccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCccEEEEecC
Q 007616 491 ESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLC 568 (596)
Q Consensus 491 ~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~C 568 (596)
..+ +++|+.| ++++|.. .+.+|. .+..+++|++|++++|+--+.+|..+.+.++....+.|+
T Consensus 674 ~~l~~L~~L~~L-dLs~N~l----~g~ip~-----------~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 737 (768)
T 3rgz_A 674 DEVGDLRGLNIL-DLSSNKL----DGRIPQ-----------AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737 (768)
T ss_dssp GGGGGCTTCCEE-ECCSSCC----EECCCG-----------GGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSC
T ss_pred hHHhCCCCCCEE-ECCCCcc----cCcCCh-----------HHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCC
Confidence 666 8999999 9999997 667776 688899999999999887788998777666666666676
Q ss_pred chH----HHhhccCCCCCccccCCccce
Q 007616 569 PYL----EERCKKDKGEYWHLVADIPKF 592 (596)
Q Consensus 569 ~~L----~~~~~~~~~~~~~~i~~i~~~ 592 (596)
|.| -..|....+++|++|+|+|.+
T Consensus 738 ~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 738 PGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp TEEESTTSCCCCSCC-------------
T ss_pred chhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 644 126888999999999999875
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.2e-29 Score=273.09 Aligned_cols=340 Identities=16% Similarity=0.123 Sum_probs=180.9
Q ss_pred ccccccccCCcCcEEEccccccccc------------------cCCccc--CCCccceeecCCCCccccccccccCCccc
Q 007616 181 VLSESVSTLYNLQTLILEYCYRLKK------------------LFPDIG--NLVNLRHLKDSHSNLLEEMPLRIGKLTSL 240 (596)
Q Consensus 181 ~lp~~i~~l~~L~~L~L~~~~~~~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~lp~~l~~l~~L 240 (596)
.+|+.++++++|++|++++| .+.. +|+.++ ++++|++|++++|...+.+|..++++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 46666777777777777777 3444 777766 77777777777776566677667777777
Q ss_pred CCCCcEEec-cCCCCCchhccch------hhccceEEEcCcCCCCCHhhHHHH--hcCCccccccccccccCCcchhhhh
Q 007616 241 RTLAKFVVG-KGNCSGLKELRSL------MHLQEKLTISGLENVNDAEDAKEA--QLNGKKKLEALSPKWGNKIQTCVFE 311 (596)
Q Consensus 241 ~~L~~~~~~-~~~~~~l~~l~~L------~~L~~~l~i~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~ 311 (596)
++|++.++. .........+..+ ++|+ .+.+.+..-. .++. .+..+++|+.|+++.+.. ....+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l-~g~ip- 347 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQL-EGKLP- 347 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCC-EEECC-
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCcC-ccchh-
Confidence 777665544 2110112222222 4554 5555442211 1112 355566666666665542 21222
Q ss_pred ccCCCCCccEEEEeccCCCCCCCCCCCCCCCC-ccEEEEecCCCCCCCC-CCCC--CCccceeeccCccCceEeCccccC
Q 007616 312 MLKPHYGLKELKVRGYGGTKFPAWLGQSSFEN-LVVLRFKNCNQCTTLP-SVGH--LPSLKNLVIKGMAKVKSVGLEFCG 387 (596)
Q Consensus 312 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~l~-~l~~--l~~L~~L~L~~~~~l~~~~~~~~~ 387 (596)
.+..+++|+.|++++|....+|.++. .+++ |+.|++++|... .+| .++. +++|+.|++++|.....++..+..
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~--~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFC--GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSE--EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred hhCCCCCCCEEECCCCccccccHhhh--hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 44444555555555555555555444 4455 555555555533 444 2222 225555555555433322222210
Q ss_pred C-CCCCCCCCcceeecccCc----------cccccceeEEecCCCCCCCCCC-C----------CCCCCEEEEeecc--C
Q 007616 388 N-YCSEPFPSLETLCFEDMQ----------EWEERIGLSIVRCPKLKGRLPQ-R----------FSSLERIVITSCE--Q 443 (596)
Q Consensus 388 ~-~~~~~~~~L~~L~l~~~~----------~l~~~~~l~l~~c~~L~~~~p~-~----------l~~L~~L~l~~c~--~ 443 (596)
. .....+++|+.|+++++. .++.+..|.+.+ ++++ .+|. . +++|+.|++++|. .
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS-SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC-CCCC-CcCHHHhccccccccccCCccEEECcCCcCCc
Confidence 0 000013455555554421 011111222222 2233 2332 1 1267777776664 3
Q ss_pred hhccCC--CCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccc-cc-cceecc
Q 007616 444 LLVSYT--ALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMV-GS-LLVYIA 517 (596)
Q Consensus 444 l~~~~~--~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~-~~-~l~~~~ 517 (596)
++..+. .+++|++|++++|... .+|..+ +++|+.| ++++|+.. ++ ..+.+|
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~----------------------~ip~~~~~l~~L~~L-~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFS----------------------KFPTQPLNSSTLKGF-GIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCS----------------------SCCCGGGGCSSCCEE-ECCSCBCTTCCBCCCCCC
T ss_pred cChhhhhccCCCcCEEECCCCCCC----------------------CcChhhhcCCCCCEE-ECCCCcccccCcccccCh
Confidence 344444 6677777777776511 234444 7888888 88654420 00 134444
Q ss_pred cCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCccEEEEecCch
Q 007616 518 EGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPY 570 (596)
Q Consensus 518 ~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~C~~ 570 (596)
. .+..+++|++|++++|+ ++.+|.. +.++|++|++++|+-
T Consensus 560 ~-----------~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 560 E-----------GITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp T-----------TGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTT
T ss_pred H-----------HHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCC
Confidence 4 67789999999999965 5999875 458999999999953
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.5e-28 Score=269.23 Aligned_cols=345 Identities=15% Similarity=0.138 Sum_probs=261.8
Q ss_pred CcccccccCCCcEEeecCCCccc------------------cccccc--cCCcCcEEEccccccccccCCcccCCCccce
Q 007616 159 LPNDIAELKHLRYLDFSHTAIEV------------------LSESVS--TLYNLQTLILEYCYRLKKLFPDIGNLVNLRH 218 (596)
Q Consensus 159 lp~~~~~l~~L~~L~L~~~~i~~------------------lp~~i~--~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 218 (596)
+|..++++++|++|+|++|.++. +|+.++ ++++|++|++++|.....+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 89999999999999999999998 999988 9999999999999778899999999999999
Q ss_pred eecCCCC-ccc-cccccccCCc-------ccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616 219 LKDSHSN-LLE-EMPLRIGKLT-------SLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 289 (596)
Q Consensus 219 L~l~~~~-~l~-~lp~~l~~l~-------~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 289 (596)
|++++|. ..+ .+|.++++++ +|++|++.++..........+..++.|+ .+.+.+..-. .++ .+.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~-~L~Ls~N~l~-----~lp-~~~ 592 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG-LLDCVHNKVR-----HLE-AFG 592 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCC-EEECTTSCCC-----BCC-CCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCC-EEECCCCCcc-----cch-hhc
Confidence 9999997 444 5888777766 9999998777665222212466677776 7777654322 112 578
Q ss_pred CccccccccccccCCcchhhhhccCCCCC-ccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCC------
Q 007616 290 GKKKLEALSPKWGNKIQTCVFEMLKPHYG-LKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVG------ 362 (596)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~------ 362 (596)
.+++|+.|+++.+... ..+..+..+++ |+.|++++|....+|.++.....++|+.|++++|...+.+|.+.
T Consensus 593 ~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp TTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred CCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 8999999999988643 55666777888 99999999998899988774344569999999998766655333
Q ss_pred CCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC-----------CCC
Q 007616 363 HLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ-----------RFS 431 (596)
Q Consensus 363 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~-----------~l~ 431 (596)
.+++|+.|++++|. +..++..... .+++|+.|+++++ ++. .+|. .++
T Consensus 671 ~~~~L~~L~Ls~N~-L~~lp~~~~~-----~l~~L~~L~Ls~N---------------~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 671 KGINASTVTLSYNE-IQKFPTELFA-----TGSPISTIILSNN---------------LMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp CCCCEEEEECCSSC-CCSCCHHHHH-----TTCCCSEEECCSC---------------CCS-CCCTTSSSCTTSCCTTGG
T ss_pred cCCCcCEEEccCCc-CCccCHHHHc-----cCCCCCEEECCCC---------------cCC-ccChHHhccccccccccC
Confidence 45689999999875 4456554432 2789999999874 222 2332 234
Q ss_pred CCCEEEEeecc--ChhccCC--CCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccc
Q 007616 432 SLERIVITSCE--QLLVSYT--ALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITR 505 (596)
Q Consensus 432 ~L~~L~l~~c~--~l~~~~~--~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~ 505 (596)
+|+.|++++|. .++..+. .+++|+.|++++|... .+|..+ +++|+.| ++++
T Consensus 729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~----------------------~lp~~l~~L~~L~~L-~Ls~ 785 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS----------------------SFPTQPLNSSQLKAF-GIRH 785 (876)
T ss_dssp GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCS----------------------SCCCGGGGCTTCCEE-ECCC
T ss_pred CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCC----------------------ccchhhhcCCCCCEE-ECCC
Confidence 89999999986 4556665 8999999999998622 234444 8889999 9987
Q ss_pred cccc-ccc-ceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCccEEEEecCch
Q 007616 506 ISMV-GSL-LVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPY 570 (596)
Q Consensus 506 c~~~-~~~-l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~C~~ 570 (596)
|+.. ++. .+.+|. .+..+++|+.|++++|+ ++.+|.. +.++|+.|++++|+-
T Consensus 786 N~~ls~N~l~~~ip~-----------~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 786 QRDAEGNRILRQWPT-----------GITTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CBCTTCCBCCCCCCT-----------TGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCTT
T ss_pred CCCcccccccccChH-----------HHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCCC
Confidence 5420 000 344444 67889999999999965 5999976 457999999999964
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5e-28 Score=268.49 Aligned_cols=425 Identities=14% Similarity=0.106 Sum_probs=228.2
Q ss_pred HHHHhhccceEEeccccCCCCccccCCceeEEEEeccccccc--------ccc----------cccccCcccccccCCCc
Q 007616 109 LACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGI--------KRF----------EGLHELPNDIAELKHLR 170 (596)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~----------~~l~~lp~~~~~l~~L~ 170 (596)
++.|.....|+ .|.|+.+. .++++.+++......+. .++ .++..+|+.++.+++|+
T Consensus 30 l~~W~~~~~~C----~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~ 103 (768)
T 3rgz_A 30 LPDWSSNKNPC----TFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLT 103 (768)
T ss_dssp STTCCTTSCGG----GSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCC
T ss_pred ccCCCCCCCCc----CCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCC
Confidence 34565443333 47777776 56777777765543321 111 11224557788888888
Q ss_pred EEeecCCCcc-cccc--ccccCCcCcEEEccccccccccCCcc-cCCCccceeecCCCCcccccccc---ccCCcccCCC
Q 007616 171 YLDFSHTAIE-VLSE--SVSTLYNLQTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLEEMPLR---IGKLTSLRTL 243 (596)
Q Consensus 171 ~L~L~~~~i~-~lp~--~i~~l~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~---l~~l~~L~~L 243 (596)
+|+|++|.+. .+|. .++.+++|++|++++|.....+|..+ +++++|++|++++|...+..|.. ++++++|++|
T Consensus 104 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L 183 (768)
T 3rgz_A 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183 (768)
T ss_dssp EEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE
T ss_pred EEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEE
Confidence 8888888887 5666 78888888888888885555666554 77888888888888733334443 5666777776
Q ss_pred CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC-------
Q 007616 244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH------- 316 (596)
Q Consensus 244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~------- 316 (596)
++.++........ ..+..|+ .+.+.+...... .+. +..+++|+.|+++++. .....+..+..+
T Consensus 184 ~Ls~n~l~~~~~~---~~l~~L~-~L~Ls~n~l~~~----~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 184 AISGNKISGDVDV---SRCVNLE-FLDVSSNNFSTG----IPF-LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp ECCSSEEESCCBC---TTCTTCC-EEECCSSCCCSC----CCB-CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEE
T ss_pred ECCCCcccccCCc---ccCCcCC-EEECcCCcCCCC----Ccc-cccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEE
Confidence 6654443322212 2233333 333333221110 011 3444444444444443 122233333444
Q ss_pred ---------------CCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCce
Q 007616 317 ---------------YGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVK 379 (596)
Q Consensus 317 ---------------~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~ 379 (596)
++|+.|++++|... .+|.++.. .+++|++|++++|...+.+| .++.+++|+.|++++|...+
T Consensus 254 Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCCcccCccCccccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 44555555554433 44444431 23566666666665444444 45566666666666665444
Q ss_pred EeCccccCCCCCCCCCCcceeecccCccc----------c-ccceeEEecCCCCCCCCCC-----CCCCCCEEEEeecc-
Q 007616 380 SVGLEFCGNYCSEPFPSLETLCFEDMQEW----------E-ERIGLSIVRCPKLKGRLPQ-----RFSSLERIVITSCE- 442 (596)
Q Consensus 380 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----------~-~~~~l~l~~c~~L~~~~p~-----~l~~L~~L~l~~c~- 442 (596)
.++....+ .+++|++|+++++.-- . .+..+.+.++ ++.+.+|. .+++|++|++++|.
T Consensus 333 ~ip~~~l~-----~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 333 ELPMDTLL-----KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp ECCHHHHT-----TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred cCCHHHHh-----cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCCcc
Confidence 55443111 1666777766654211 0 2224444432 22223332 14567777776665
Q ss_pred --ChhccCCCCCCcceEEecCCccc------------ceeeEecccccccccCCccccccccccc--chhhhcccccccc
Q 007616 443 --QLLVSYTALPPLCELEIDGFSEL------------FLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRI 506 (596)
Q Consensus 443 --~l~~~~~~l~~L~~L~l~~c~~l------------l~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c 506 (596)
.++..+..+++|++|++++|... ++.+.+.++.-. + .+|..+ +++|+.| ++++|
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~--------~~p~~~~~l~~L~~L-~L~~N 476 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-G--------EIPQELMYVKTLETL-ILDFN 476 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-S--------CCCGGGGGCTTCCEE-ECCSS
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-C--------cCCHHHcCCCCceEE-EecCC
Confidence 23455666777777777776522 222333332211 0 123333 5555555 55555
Q ss_pred ccccccceecccC-CCCCCCCCC-----------C-CCCCCCCCCeeecCCCCCCccCCCC-CCCCCccEEEEecCch
Q 007616 507 SMVGSLLVYIAEG-GEFPQLESL-----------S-FVGNLTSLERLELPRCPVLRSFPEN-VLPPSLVYLSIYLCPY 570 (596)
Q Consensus 507 ~~~~~~l~~~~~~-~~~~~L~~l-----------~-~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~C~~ 570 (596)
.. .+.+|.. +.+++|+.+ | ++..+++|++|++++|+....+|.. ..+++|++|++++|+-
T Consensus 477 ~l----~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 477 DL----TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CC----CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cc----cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 54 2233322 222333222 1 5677889999999997665577753 2378899999998853
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=9.3e-27 Score=252.38 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=70.5
Q ss_pred ccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcc
Q 007616 132 RFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDI 210 (596)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i 210 (596)
.++..++.+.+..+.+.. ..|..|+++++|++|++++|.+..+ |..|+++++|++|++++|......|..+
T Consensus 30 ~l~~~l~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPT--------IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp TSCTTCCEEECTTCCCSE--------ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred CCCCcCcEEEccCCccCc--------CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 345677888877776554 2355667777777777777777654 5566777777777777773333335566
Q ss_pred cCCCccceeecCCCCccccc-cccccCCcccCCCCcEEecc
Q 007616 211 GNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGK 250 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~~~~~~~ 250 (596)
+++++|++|++++|. +..+ |..++++++|++|++.++..
T Consensus 102 ~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 102 SGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp SSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred cccccccEeeccccC-cccCCcchhccCCcccEEECCCCcc
Confidence 777777777777776 5554 34466667777766655444
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.2e-26 Score=249.50 Aligned_cols=377 Identities=17% Similarity=0.176 Sum_probs=210.9
Q ss_pred cccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCccc--ccccccc
Q 007616 160 PNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLE--EMPLRIG 235 (596)
Q Consensus 160 p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~l~ 235 (596)
|..|+++++|++|++++|.++.+ |..|+++++|++|++++| .+..+| ..++++++|++|++++|. +. .+|..++
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~ 150 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFS 150 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGG
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCc-ccceechHhHh
Confidence 45677788888888888887766 667788888888888887 555555 567788888888888887 44 4677788
Q ss_pred CCcccCCCCcEEeccCC--CCCchhccchhhccceEEEcCcC--------------------CCCCHhhHHHHhcCCccc
Q 007616 236 KLTSLRTLAKFVVGKGN--CSGLKELRSLMHLQEKLTISGLE--------------------NVNDAEDAKEAQLNGKKK 293 (596)
Q Consensus 236 ~l~~L~~L~~~~~~~~~--~~~l~~l~~L~~L~~~l~i~~~~--------------------~~~~~~~~~~~~l~~~~~ 293 (596)
++++|++|++.++.... ...+..+.+++.....+.+.... .........+..+..+++
T Consensus 151 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 230 (606)
T 3vq2_A 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230 (606)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccc
Confidence 88888888776554432 11222222222100022222110 000011223333344444
Q ss_pred cccccccc--------------------------------cCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCC
Q 007616 294 LEALSPKW--------------------------------GNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSF 341 (596)
Q Consensus 294 L~~L~l~~--------------------------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 341 (596)
++.+.+.. ........+. +..+++|+.|+++++....+| ++. .+
T Consensus 231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~--~~ 306 (606)
T 3vq2_A 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVP--KH 306 (606)
T ss_dssp CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCC--TT
T ss_pred cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hcc--cc
Confidence 44333321 1111112222 556788888888888877777 444 67
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc------------ccc
Q 007616 342 ENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ------------EWE 409 (596)
Q Consensus 342 ~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------~l~ 409 (596)
++|+.|++++|.. +.+|.+ .+++|+.|++++|..+..+. + ..+++|+.|+++++. .+.
T Consensus 307 ~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--~------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 307 FKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--K------VALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--C------CCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred ccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--h------ccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 7888888888876 777766 78888888888875555442 1 126667777666532 112
Q ss_pred ccceeEEecCCCCCCCCC---CCCCCCCEEEEeeccC--h-h-ccCCCCCCcceEEecCCccc------------ceeeE
Q 007616 410 ERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCEQ--L-L-VSYTALPPLCELEIDGFSEL------------FLILQ 470 (596)
Q Consensus 410 ~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~~--l-~-~~~~~l~~L~~L~l~~c~~l------------l~~l~ 470 (596)
.+..+.+.++. +. .+| ..+++|+.|++++|.- . + ..+..+++|++|++++|... ++.+.
T Consensus 377 ~L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 377 SLRHLDLSFNG-AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp CCCEEECCSCS-EE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred cccEeECCCCc-cc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 22244444432 22 122 2456666776666542 1 1 34556666666666666522 22222
Q ss_pred ecccccccccCCccccccccccc--chhhhccccccccccccccceecccC--CCCCCCCCCC------------CCCCC
Q 007616 471 IQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEG--GEFPQLESLS------------FVGNL 534 (596)
Q Consensus 471 ~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~--~~~~~L~~l~------------~~~~l 534 (596)
++++.-... .+|..+ +++|+.| ++++|.. +.++.. +.+++|+.+. .+..+
T Consensus 455 l~~n~l~~~--------~~~~~~~~l~~L~~L-~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 455 MAGNSFKDN--------TLSNVFANTTNLTFL-DLSKCQL-----EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp CTTCEEGGG--------EECSCCTTCTTCCEE-ECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred CCCCcCCCc--------chHHhhccCCCCCEE-ECCCCcC-----CccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 222211000 012222 4555555 5555542 222211 1223333221 57788
Q ss_pred CCCCeeecCCCCCCccCCCCC--CCCCccEEEEecCc
Q 007616 535 TSLERLELPRCPVLRSFPENV--LPPSLVYLSIYLCP 569 (596)
Q Consensus 535 ~~L~~L~l~~c~~l~~lp~~~--~~~~L~~L~i~~C~ 569 (596)
++|++|++++| +++.+|... ++++|++|+++++|
T Consensus 521 ~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 521 YSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred CcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 99999999996 488888752 23479999998864
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=5.2e-26 Score=246.54 Aligned_cols=399 Identities=16% Similarity=0.116 Sum_probs=259.2
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDI 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i 210 (596)
.+.+++.+.+..+.... ..|..|.++++|++|++++|.++.+ |..|+++++|++|++++| .+..+ |..+
T Consensus 30 ~~~~l~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKI--------LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSF 100 (606)
T ss_dssp SCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSS
T ss_pred CCCCcCEEECCCCCcCE--------eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhc
Confidence 45678888887776654 2345789999999999999999977 567899999999999999 56655 7889
Q ss_pred cCCCccceeecCCCCcccccc-ccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCC----HhhHH-
Q 007616 211 GNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVND----AEDAK- 284 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~----~~~~~- 284 (596)
+++++|++|++++|. +..+| ..++++++|++|++.++..........+.++++|+ .+.+.+..-... .....
T Consensus 101 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 101 SGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp TTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC-EEECCSSCCCEECTTTTHHHHH
T ss_pred CCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC-EEEccCCcceecChhhhhhhhc
Confidence 999999999999999 77766 56999999999999887765433344566666776 666655321110 00000
Q ss_pred ------------------HHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccC------------------
Q 007616 285 ------------------EAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYG------------------ 328 (596)
Q Consensus 285 ------------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------------------ 328 (596)
........+|+.|+++++.......+..+..+++++.+++....
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 00011123677777777654444555566667777776664322
Q ss_pred ---------------CCC-CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616 329 ---------------GTK-FPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE 392 (596)
Q Consensus 329 ---------------~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 392 (596)
... .|. +. .+++|+.|+++++.. +.+|.++.+++|+.|++++|.. +.++ .+ .
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~----- 326 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-D----- 326 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCC-CC-C-----
T ss_pred hhccHhheeccccccccccccc-cc--cCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccc-cC-C-----
Confidence 111 122 22 678999999999884 6677889999999999999875 6665 22 3
Q ss_pred CCCCcceeecccCcccc--------ccceeEEecCCCCCCC--CC---CCCCCCCEEEEeecc--ChhccCCCCCCcceE
Q 007616 393 PFPSLETLCFEDMQEWE--------ERIGLSIVRCPKLKGR--LP---QRFSSLERIVITSCE--QLLVSYTALPPLCEL 457 (596)
Q Consensus 393 ~~~~L~~L~l~~~~~l~--------~~~~l~l~~c~~L~~~--~p---~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L 457 (596)
+++|+.|+++++.... .+..+.+.++ ++.+. +| ..+++|+.|++++|. .++..+..+++|++|
T Consensus 327 -l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 327 -LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404 (606)
T ss_dssp -CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEE
T ss_pred -CCccceeeccCCcCccchhhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCee
Confidence 8999999998864332 2224444443 22211 12 256777777777765 234556677778888
Q ss_pred EecCCcccceeeEecccc--cccccCCccccc---------cccccc--chhhhcccccccccccccccee-cccC-CCC
Q 007616 458 EIDGFSELFLILQIQGWR--SRAEILPQEIRI---------PNQESL--LDGLQKLSHITRISMVGSLLVY-IAEG-GEF 522 (596)
Q Consensus 458 ~l~~c~~ll~~l~~~~~~--~l~~~~p~l~~l---------~~p~~~--l~~L~~L~~l~~c~~~~~~l~~-~~~~-~~~ 522 (596)
++++|... +.. .....+++|+.+ ..|..+ +++|+.| ++++|.. .+. +|.. +.+
T Consensus 405 ~l~~n~l~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l----~~~~~~~~~~~l 472 (606)
T 3vq2_A 405 DFQHSTLK-------RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL-KMAGNSF----KDNTLSNVFANT 472 (606)
T ss_dssp ECTTSEEE-------STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEE----GGGEECSCCTTC
T ss_pred ECCCCccC-------CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE-ECCCCcC----CCcchHHhhccC
Confidence 88777522 100 001123333333 133333 8899999 9999985 332 3432 234
Q ss_pred CCCCCCC------------CCCCCCCCCeeecCCCCCCccC-CCC-CCCCCccEEEEecCc
Q 007616 523 PQLESLS------------FVGNLTSLERLELPRCPVLRSF-PEN-VLPPSLVYLSIYLCP 569 (596)
Q Consensus 523 ~~L~~l~------------~~~~l~~L~~L~l~~c~~l~~l-p~~-~~~~~L~~L~i~~C~ 569 (596)
++|+.+. .+..+++|++|++++|+ +..+ |.. ..+++|++|++++|.
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc
Confidence 4444432 45667778888887753 4444 322 225678888887774
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.8e-27 Score=259.77 Aligned_cols=361 Identities=14% Similarity=0.156 Sum_probs=197.2
Q ss_pred CCCCccccCCceeEEEEecccccccccccccccCcccccccCCCcEEee-cCCCc-------------------------
Q 007616 126 DGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDF-SHTAI------------------------- 179 (596)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L-~~~~i------------------------- 179 (596)
.|+.+.. ..++..|.+.++...+ .+|++++++++|++|+| ++|.+
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~~~L~G--------~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~ 385 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAGFGAKG--------RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385 (876)
T ss_dssp TTEEECT-TSCEEEEECTTTCCEE--------EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHT
T ss_pred CceEecC-CCCEEEEECccCCCCC--------cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHH
Confidence 4444433 4677888887776665 78999999999999999 66532
Q ss_pred ----------------------------------------------------cccccccccCCcCcEEEccccccccc--
Q 007616 180 ----------------------------------------------------EVLSESVSTLYNLQTLILEYCYRLKK-- 205 (596)
Q Consensus 180 ----------------------------------------------------~~lp~~i~~l~~L~~L~L~~~~~~~~-- 205 (596)
+.+|..++++++|++|+|++| .+..
T Consensus 386 ~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~ 464 (876)
T 4ecn_A 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDN 464 (876)
T ss_dssp HHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGG
T ss_pred hhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC-cCCCCc
Confidence 226777778888888888887 4554
Q ss_pred ----------------cCCccc--CCCccceeecCCCCccccccccccCCcccCCCCcEEec-cCCCCCchhccchhhcc
Q 007616 206 ----------------LFPDIG--NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG-KGNCSGLKELRSLMHLQ 266 (596)
Q Consensus 206 ----------------lp~~i~--~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~ 266 (596)
+|+.++ ++++|++|++++|...+.+|..++++++|++|++.++. .........+..+.
T Consensus 465 i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~--- 541 (876)
T 4ecn_A 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA--- 541 (876)
T ss_dssp BSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH---
T ss_pred ccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh---
Confidence 777777 88888888888877677777778888888877765443 21101111122222
Q ss_pred ceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhh--ccCCCCCccEEEEeccCCCCCCCCCCCCCCCCc
Q 007616 267 EKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE--MLKPHYGLKELKVRGYGGTKFPAWLGQSSFENL 344 (596)
Q Consensus 267 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 344 (596)
..+..+++|+.|+++.+... .++. .+..+++|+.|++++|....+| .+. .+++|
T Consensus 542 -------------------~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~--~L~~L 597 (876)
T 4ecn_A 542 -------------------DDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFG--TNVKL 597 (876)
T ss_dssp -------------------HCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC--TTSEE
T ss_pred -------------------hcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhc--CCCcc
Confidence 01223334555555444322 2222 3444455555555555444444 222 44455
Q ss_pred cEEEEecCCCCCCCC-CCCCCCc-cceeeccCccCceEeCccccCCCCCCCCCCcceeecccCcccc-------------
Q 007616 345 VVLRFKNCNQCTTLP-SVGHLPS-LKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWE------------- 409 (596)
Q Consensus 345 ~~L~l~~~~~~~~l~-~l~~l~~-L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~------------- 409 (596)
+.|++++|... .+| .++.+++ |+.|++++|. +..++..+.. ...++|+.|+++++.--.
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~----~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNA----KSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCT----TCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhc----cccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 55555554433 333 3444444 5555555443 2233322111 011224444444421000
Q ss_pred --ccceeEEecCCCCCCCCCC----CCCCCCEEEEeecc--ChhccCC--------CCCCcceEEecCCcccceeeEecc
Q 007616 410 --ERIGLSIVRCPKLKGRLPQ----RFSSLERIVITSCE--QLLVSYT--------ALPPLCELEIDGFSELFLILQIQG 473 (596)
Q Consensus 410 --~~~~l~l~~c~~L~~~~p~----~l~~L~~L~l~~c~--~l~~~~~--------~l~~L~~L~l~~c~~ll~~l~~~~ 473 (596)
.+..|.+.+ +++. .+|. .+++|+.|++++|. .++..+. ++++|++|++++|...
T Consensus 672 ~~~L~~L~Ls~-N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-------- 741 (876)
T 4ecn_A 672 GINASTVTLSY-NEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-------- 741 (876)
T ss_dssp CCCEEEEECCS-SCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--------
T ss_pred CCCcCEEEccC-CcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--------
Confidence 011111111 2233 3442 45666666666654 1222111 1226666666666411
Q ss_pred cccccccCCccccccccccc----chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCC-----
Q 007616 474 WRSRAEILPQEIRIPNQESL----LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPR----- 544 (596)
Q Consensus 474 ~~~l~~~~p~l~~l~~p~~~----l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~----- 544 (596)
.+|..+ +++|+.| ++++|. ++.+|. .+..+++|+.|++++
T Consensus 742 --------------~lp~~l~~~~l~~L~~L-~Ls~N~-----L~~lp~-----------~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 742 --------------SLSDDFRATTLPYLSNM-DVSYNC-----FSSFPT-----------QPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp --------------CCCGGGSTTTCTTCCEE-ECCSSC-----CSSCCC-----------GGGGCTTCCEEECCCCBCTT
T ss_pred --------------cchHHhhhccCCCcCEE-EeCCCC-----CCccch-----------hhhcCCCCCEEECCCCCCcc
Confidence 122222 5777888 888776 333554 567889999999977
Q ss_pred -CCCCccCCCC-CCCCCccEEEEecCch
Q 007616 545 -CPVLRSFPEN-VLPPSLVYLSIYLCPY 570 (596)
Q Consensus 545 -c~~l~~lp~~-~~~~~L~~L~i~~C~~ 570 (596)
|.....+|.. ..+++|+.|++++|.-
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC
Confidence 3334556643 2278999999998864
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=3.6e-25 Score=248.10 Aligned_cols=142 Identities=16% Similarity=0.084 Sum_probs=70.3
Q ss_pred ccCCCCCccEEEEeccCCCCCC-CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCC
Q 007616 312 MLKPHYGLKELKVRGYGGTKFP-AWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNY 389 (596)
Q Consensus 312 ~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 389 (596)
.+..+++|+.|++++|....++ ..+. .+++|++|++++|...+..+ .++.+++|+.|++++|. +..++....
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~--- 358 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF--- 358 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS---
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhh---
Confidence 3444556666666666554442 2333 45666666666665433323 45566666666666653 333332211
Q ss_pred CCCCCCCcceeecccCc-----cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccCh----hccCCCCCCcceEEec
Q 007616 390 CSEPFPSLETLCFEDMQ-----EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQL----LVSYTALPPLCELEID 460 (596)
Q Consensus 390 ~~~~~~~L~~L~l~~~~-----~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l----~~~~~~l~~L~~L~l~ 460 (596)
..+++|+.|++++.. .+..+..+.+.++ ++. .+|....+++.|+++++.-- ...+..+++|++|+++
T Consensus 359 --~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N-~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 359 --KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN-KLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434 (844)
T ss_dssp --CSCCCCCEEEEETCCSCCCSSCCSCSEEEEESC-CCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred --cCCCCCCEEECCCCCCCcccCCCCcchhccCCC-Ccc-cccccccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence 226667777666521 1222334444442 333 34444444555555444311 1123356666666666
Q ss_pred CCc
Q 007616 461 GFS 463 (596)
Q Consensus 461 ~c~ 463 (596)
+|.
T Consensus 435 ~N~ 437 (844)
T 3j0a_A 435 QNR 437 (844)
T ss_dssp SCC
T ss_pred CCc
Confidence 665
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=242.06 Aligned_cols=388 Identities=18% Similarity=0.201 Sum_probs=195.9
Q ss_pred cCCceeEEEEecccccccc-----cccccc----------cC-cccccccCCCcEEeecCCCccccc-cccccCCcCcEE
Q 007616 133 FSRNLRHLSYLTSRFDGIK-----RFEGLH----------EL-PNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTL 195 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~-----~~~~l~----------~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L 195 (596)
.+..++.+.+..+....+. .++.++ .+ |..|+++++|++|++++|.++.+| ..++.+++|++|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 4556777777666544321 111111 22 334566666666666666666554 456666666666
Q ss_pred EccccccccccCC-cccCCCccceeecCCCCcccc--ccccccCCcccCCCCcEEeccCCCCCchhccchhhcc---ceE
Q 007616 196 ILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQ---EKL 269 (596)
Q Consensus 196 ~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~---~~l 269 (596)
++++| .+..+|. .++++++|++|++++|. +.. +|..++++++|++|++.++..... ....+..+.++. ..+
T Consensus 106 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 106 VAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp ECTTS-CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEE-CGGGGHHHHTCTTCCCEE
T ss_pred ccccc-ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCcccee-cHHHccchhccchhhhhc
Confidence 66666 5555554 46666777777777666 433 566666677777766544433221 112233333330 123
Q ss_pred EEcCcCCCCCHhhHHHHhcCCccccccccccccC----------------------------------------------
Q 007616 270 TISGLENVNDAEDAKEAQLNGKKKLEALSPKWGN---------------------------------------------- 303 (596)
Q Consensus 270 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---------------------------------------------- 303 (596)
.+.+.... ......+.. .+|+.|+++.+.
T Consensus 183 ~l~~n~l~----~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l 257 (570)
T 2z63_A 183 DLSLNPMN----FIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257 (570)
T ss_dssp ECTTCCCC----EECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred ccCCCCce----ecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence 33221100 000000111 122333222210
Q ss_pred -----------CcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeec
Q 007616 304 -----------KIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVI 372 (596)
Q Consensus 304 -----------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L 372 (596)
......+..+..+++|+.|+++++....+|.++. .+ +|+.|++++|... .+|. +.+++|+.|++
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l 332 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccCccc-ccCc-ccccccCEEeC
Confidence 1111223344556788888888887777777766 45 7778888777633 4543 45666666666
Q ss_pred cCccCceEeCccccCCCCCCCCCCcceeecccCcc------------ccccceeEEecCCCCCCCCC---CCCCCCCEEE
Q 007616 373 KGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQE------------WEERIGLSIVRCPKLKGRLP---QRFSSLERIV 437 (596)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~ 437 (596)
.+|......+. ..+++|+.|+++++.- +..+..+.+.++. +. .+| ..+++|+.|+
T Consensus 333 ~~n~~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~-~~~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 333 TSNKGGNAFSE--------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VI-TMSSNFLGLEQLEHLD 402 (570)
T ss_dssp ESCBSCCBCCC--------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EE-EEEEEEETCTTCCEEE
T ss_pred cCCcccccccc--------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cc-cccccccccCCCCEEE
Confidence 66543322221 1255566665554320 1111122222211 11 011 1344555555
Q ss_pred EeeccCh----hccCCCCCCcceEEecCCccc------------ceeeEecccccccccCCccccccccccc--chhhhc
Q 007616 438 ITSCEQL----LVSYTALPPLCELEIDGFSEL------------FLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQK 499 (596)
Q Consensus 438 l~~c~~l----~~~~~~l~~L~~L~l~~c~~l------------l~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~ 499 (596)
+++|.-. ...+..+++|++|++++|... ++.+.+.+|.-..+ .+|..+ +++|+.
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------FLPDIFTELRNLTF 474 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--------EECSCCTTCTTCCE
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc--------cchhhhhcccCCCE
Confidence 5544311 123444555555555555311 11111111110000 133333 677778
Q ss_pred cccccccccccccceec-ccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecCc
Q 007616 500 LSHITRISMVGSLLVYI-AEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLCP 569 (596)
Q Consensus 500 L~~l~~c~~~~~~l~~~-~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C~ 569 (596)
| ++++|.. +.+ |. .+..+++|++|++++| +++.++...+ +++|++|++++++
T Consensus 475 L-~l~~n~l-----~~~~~~-----------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 475 L-DLSQCQL-----EQLSPT-----------AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp E-ECTTSCC-----CEECTT-----------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred E-ECCCCcc-----ccCChh-----------hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 8 8887763 333 33 5778999999999996 5777776543 7899999999854
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=236.29 Aligned_cols=372 Identities=18% Similarity=0.169 Sum_probs=223.0
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCccc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIG 211 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~ 211 (596)
.+.+++.+.+..+.+.. ..|..|..+++|++|++++|.++.+ |..++.+++|++|++++| .++.+|..
T Consensus 19 ~~~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 87 (520)
T 2z7x_B 19 LSQKTTILNISQNYISE--------LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-- 87 (520)
T ss_dssp CCTTCSEEECCSSCCCC--------CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--
T ss_pred ccccccEEECCCCcccc--------cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--
Confidence 34678888888776653 2346789999999999999999977 678999999999999999 78889887
Q ss_pred CCCccceeecCCCCcccc--ccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCC--CC-------C-
Q 007616 212 NLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLEN--VN-------D- 279 (596)
Q Consensus 212 ~L~~L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~--~~-------~- 279 (596)
.+++|++|++++|. +.. +|..++++++|++|++.++.... ..+..+.++ .++ .+.+.+... .. .
T Consensus 88 ~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~-~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHL-NIS-KVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTS-CEE-EEEEEECTTTTSSCCTTTTTTC
T ss_pred ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch-hhccccccc-eee-EEEeeccccccccccccccccc
Confidence 89999999999998 554 67889999999999998876643 223333333 113 444433211 00 0
Q ss_pred ---------------------------------------------HhhHHHHhcCCccccccccccccCCcchhhhhcc-
Q 007616 280 ---------------------------------------------AEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML- 313 (596)
Q Consensus 280 ---------------------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l- 313 (596)
..+.. ..+..+++|+.|+++.+.... ..+..+
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~-~~~~~~~ 241 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTW-NSFIRIL 241 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEH-HHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCH-HHHHHHH
Confidence 11111 123334444444443322111 100000
Q ss_pred --CCCCCccEEEEeccCCC-CCCCCCCC---CCCCCccEEEEecCCCCCCCC--CCCCC---CccceeeccCccCceEeC
Q 007616 314 --KPHYGLKELKVRGYGGT-KFPAWLGQ---SSFENLVVLRFKNCNQCTTLP--SVGHL---PSLKNLVIKGMAKVKSVG 382 (596)
Q Consensus 314 --~~~~~L~~L~l~~~~~~-~~~~~~~~---~~~~~L~~L~l~~~~~~~~l~--~l~~l---~~L~~L~L~~~~~l~~~~ 382 (596)
...++|+.|++++|... .+|.++.. ..+++|+.+++++|.. .+| .++.+ ++|+.|++++|.... ++
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~ 318 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML 318 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-cc
Confidence 01247788888877654 66766510 1677777788877764 444 12222 456777776654221 11
Q ss_pred ccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeeccCh-----hccCCCCCCc
Q 007616 383 LEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCEQL-----LVSYTALPPL 454 (596)
Q Consensus 383 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~~l-----~~~~~~l~~L 454 (596)
+ ...+++|+.|+++++ ++.+.+| ..+++|+.|++++|.-- +..+..+++|
T Consensus 319 --~-----~~~l~~L~~L~Ls~n---------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 319 --C-----PSKISPFLHLDFSNN---------------LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp --C-----CSSCCCCCEEECCSS---------------CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred --c-----hhhCCcccEEEeECC---------------ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence 0 022677777777763 2332233 24566777777666521 2345667777
Q ss_pred ceEEecCCcccceeeEecccccccccCCccccc---------ccccccchhhhccccccccccccccceecccCCCCCCC
Q 007616 455 CELEIDGFSELFLILQIQGWRSRAEILPQEIRI---------PNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQL 525 (596)
Q Consensus 455 ~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l---------~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L 525 (596)
++|++++|..... +.... ...+++++.+ .+|..+.++|+.| ++++|. ++.+|.
T Consensus 377 ~~L~Ls~N~l~~~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L-~Ls~N~-----l~~ip~------- 438 (520)
T 2z7x_B 377 QQLDISQNSVSYD-EKKGD----CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL-DLHSNK-----IKSIPK------- 438 (520)
T ss_dssp CEEECCSSCCBCC-GGGCS----CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEE-ECCSSC-----CCCCCG-------
T ss_pred CEEECCCCcCCcc-cccch----hccCccCCEEECcCCCCCcchhhhhcccCCEE-ECCCCc-----ccccch-------
Confidence 7777776652200 00000 0011222221 1122223567777 777775 445554
Q ss_pred CCCCCCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecCc
Q 007616 526 ESLSFVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLCP 569 (596)
Q Consensus 526 ~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C~ 569 (596)
.+..+++|++|++++| +++.+|...+ +++|++|++++++
T Consensus 439 ----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 439 ----QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ----GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----hhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 4668999999999996 6889998633 7899999999875
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.7e-25 Score=230.65 Aligned_cols=339 Identities=17% Similarity=0.195 Sum_probs=245.6
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 214 (596)
.+++.+.+..+... .+| .+..+++|++|++++|.++.+|+ ++.+++|++|++++| .+..+|. +++++
T Consensus 46 ~~l~~L~l~~~~i~---------~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLGIK---------SID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLT 112 (466)
T ss_dssp HTCCEEECCSSCCC---------CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred ccccEEecCCCCCc---------cCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCC
Confidence 45677777655443 455 37889999999999999999887 999999999999999 7777776 99999
Q ss_pred ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL 294 (596)
Q Consensus 215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L 294 (596)
+|++|++++|. +..+|. ++++++|++|++.++...... .+..+..|+ .+.+.+ ..... ..+..+++|
T Consensus 113 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~-~L~l~~--~~~~~-----~~~~~l~~L 179 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS---ALSGLTSLQ-QLSFGN--QVTDL-----KPLANLTTL 179 (466)
T ss_dssp TCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG---GGTTCTTCS-EEEEEE--SCCCC-----GGGTTCTTC
T ss_pred CCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCCCh---hhccCCccc-EeecCC--cccCc-----hhhccCCCC
Confidence 99999999998 888876 899999999999988766543 344555555 555542 11111 127788999
Q ss_pred ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccC
Q 007616 295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG 374 (596)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~ 374 (596)
+.|+++.+..... ..+..+++|+.|++++|.....+. +. .+++|+.|++++|. ++.++.++.+++|+.|++++
T Consensus 180 ~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 180 ERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITP-LG--ILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLAN 252 (466)
T ss_dssp CEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GG--GCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCS
T ss_pred CEEECcCCcCCCC---hhhccCCCCCEEEecCCccccccc-cc--ccCCCCEEECCCCC-cccchhhhcCCCCCEEECCC
Confidence 9999988764332 346678899999999998777655 33 68899999999987 45567788899999999998
Q ss_pred ccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCC-CCCCCCCCEEEEeeccCh-hccCCCCC
Q 007616 375 MAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRL-PQRFSSLERIVITSCEQL-LVSYTALP 452 (596)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~-p~~l~~L~~L~l~~c~~l-~~~~~~l~ 452 (596)
|... .++. + ..+++|+.|+++++. +.+.. ...+++|+.|++++|.-- ...+..++
T Consensus 253 n~l~-~~~~-~------~~l~~L~~L~l~~n~---------------l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 309 (466)
T 1o6v_A 253 NQIS-NLAP-L------SGLTKLTELKLGANQ---------------ISNISPLAGLTALTNLELNENQLEDISPISNLK 309 (466)
T ss_dssp SCCC-CCGG-G------TTCTTCSEEECCSSC---------------CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCT
T ss_pred Cccc-cchh-h------hcCCCCCEEECCCCc---------------cCccccccCCCccCeEEcCCCcccCchhhcCCC
Confidence 7533 2222 2 237889998888742 22111 135788999999888622 12366788
Q ss_pred CcceEEecCCcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCC
Q 007616 453 PLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVG 532 (596)
Q Consensus 453 ~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~ 532 (596)
+|++|++++|... +. .|...+++|+.| ++++|.. +.+ +.+.
T Consensus 310 ~L~~L~L~~n~l~-------~~--------------~~~~~l~~L~~L-~l~~n~l-----~~~------------~~l~ 350 (466)
T 1o6v_A 310 NLTYLTLYFNNIS-------DI--------------SPVSSLTKLQRL-FFYNNKV-----SDV------------SSLA 350 (466)
T ss_dssp TCSEEECCSSCCS-------CC--------------GGGGGCTTCCEE-ECCSSCC-----CCC------------GGGT
T ss_pred CCCEEECcCCcCC-------Cc--------------hhhccCccCCEe-ECCCCcc-----CCc------------hhhc
Confidence 9999999988621 11 111117888888 8888863 332 2466
Q ss_pred CCCCCCeeecCCCCCCccCCCCCCCCCccEEEEecCc
Q 007616 533 NLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCP 569 (596)
Q Consensus 533 ~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~C~ 569 (596)
.+++|+.|++++|+ +..++....+++|+.|++++|+
T Consensus 351 ~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 351 NLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCEE
T ss_pred cCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCCc
Confidence 78888888888865 4444444457788888888874
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=3e-25 Score=237.59 Aligned_cols=410 Identities=15% Similarity=0.116 Sum_probs=234.2
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCc-c
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPD-I 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~-i 210 (596)
.+..++.+.+..+.+.. ..|..|+.+++|++|++++|.++.++ ..++.+++|++|++++| .+..+|.. +
T Consensus 24 ~~~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 94 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITY--------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWF 94 (549)
T ss_dssp CCTTCCEEECCSSCCCE--------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHH
T ss_pred CCCCccEEECcCCccCc--------cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHh
Confidence 34577888887776554 34677899999999999999999775 67899999999999999 66666655 9
Q ss_pred cCCCccceeecCCCCccc--cccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhc
Q 007616 211 GNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL 288 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l 288 (596)
+++++|++|++++|. +. ..|..++++++|++|++.++..........+..+++|+ .+.+.+..- ....+..+
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l----~~~~~~~l 168 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALSL----RNYQSQSL 168 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETTC----CEECTTTT
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCCcc----cccChhhh
Confidence 999999999999998 65 35677999999999998887633322223344455555 666654221 12233457
Q ss_pred CCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCC---CCCCCCCCCCccEEEEecCCCCCCCC-----C
Q 007616 289 NGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFP---AWLGQSSFENLVVLRFKNCNQCTTLP-----S 360 (596)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~l~-----~ 360 (596)
..+++|+.|+++++..... .......+++|+.|++++|....++ ..+. ..+++|+.|+++++...+..+ .
T Consensus 169 ~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVD-EVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hccccCceEecccCccccc-chhhHhhcccccEEEccCCccccccccccchh-hhhhcccceeccccccchhHHHHHHHH
Confidence 7788899998887653211 1112234788999999998766542 2222 246778888887765322111 2
Q ss_pred CCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCcc---------------ccccceeEEecCCCCCCC
Q 007616 361 VGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQE---------------WEERIGLSIVRCPKLKGR 425 (596)
Q Consensus 361 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------l~~~~~l~l~~c~~L~~~ 425 (596)
+..+++|+.+++.+|...+..............+++|+.|.+.++.- ...+..+.+.++ ++. .
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~-~ 324 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVF-L 324 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCC-C
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccc-c
Confidence 34456667777666542111000000001112245555555543210 012224444443 233 4
Q ss_pred CCC----CCCCCCEEEEeeccCh------hccCCCCCCcceEEecCCccc--------------ceeeEeccccccc---
Q 007616 426 LPQ----RFSSLERIVITSCEQL------LVSYTALPPLCELEIDGFSEL--------------FLILQIQGWRSRA--- 478 (596)
Q Consensus 426 ~p~----~l~~L~~L~l~~c~~l------~~~~~~l~~L~~L~l~~c~~l--------------l~~l~~~~~~~l~--- 478 (596)
+|. .+++|+.|++++|.-. ...+..+++|++|++++|... ++.++++++. ++
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp 403 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMP 403 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCC
Confidence 442 3566666666665422 112445566666666665421 2233333321 11
Q ss_pred ---ccCCccccc--------ccccccchhhhccccccccccccccceecccC-C-------CCCCCCCCCCCCCCCCCCe
Q 007616 479 ---EILPQEIRI--------PNQESLLDGLQKLSHITRISMVGSLLVYIAEG-G-------EFPQLESLSFVGNLTSLER 539 (596)
Q Consensus 479 ---~~~p~l~~l--------~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~-~-------~~~~L~~l~~~~~l~~L~~ 539 (596)
..+++++.+ .+|..+.++|+.| ++++|.. +.++.. . ..++++.+|....+++|+.
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L-~Ls~N~l-----~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~ 477 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL-DVSNNNL-----DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLV 477 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEE-ECCSSCC-----SCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCE
T ss_pred hhhcccccccEEECCCCCcccccchhcCCceEE-ECCCCCh-----hhhcccCChhcEEECCCCccCcCCCcccCccCCE
Confidence 111222222 1222223455555 5555542 222210 0 0233344444456778888
Q ss_pred eecCCCCCCccCCCCCC--CCCccEEEEecCc
Q 007616 540 LELPRCPVLRSFPENVL--PPSLVYLSIYLCP 569 (596)
Q Consensus 540 L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C~ 569 (596)
|++++| +++.++...+ +++|++|++++|+
T Consensus 478 L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 478 MKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 888884 5677666433 6788888887764
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=4.4e-24 Score=234.55 Aligned_cols=249 Identities=17% Similarity=0.146 Sum_probs=153.1
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCC-cc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFP-DI 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~-~i 210 (596)
.+.+++++.+..+.+.. ..|..|+++++|++|++++|.++.+ |..++++++|++|++++| .+..+|. .+
T Consensus 23 ~~~~l~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRR--------LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTF 93 (680)
T ss_dssp SCTTCSEEECCSSCCCC--------CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cCCCCcEEECCCCCCCC--------cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhh
Confidence 45678888887765553 2234577788888888888877755 556777888888888887 6667775 47
Q ss_pred cCCCccceeecCCCCcccccc-ccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616 211 GNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 289 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 289 (596)
+++++|++|++++|. +..+| ..++++++|++|++.++.... .....+.++++|+ .+.+.+..-.. .... .....
T Consensus 94 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~-~L~L~~n~l~~-~~~~-~~~~~ 168 (680)
T 1ziw_A 94 AFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQ-ELLLSNNKIQA-LKSE-ELDIF 168 (680)
T ss_dssp TTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCC-EEECCSSCCCC-BCHH-HHGGG
T ss_pred ccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccc-cCchhhcccccCC-EEEccCCcccc-cCHH-Hhhcc
Confidence 788888888888887 56665 347778888888776654432 1223344455555 55555432111 1110 11122
Q ss_pred CccccccccccccCCcchhhhhccC---------------------------CCCCccEEEEeccCCCCC-CCCCCCCCC
Q 007616 290 GKKKLEALSPKWGNKIQTCVFEMLK---------------------------PHYGLKELKVRGYGGTKF-PAWLGQSSF 341 (596)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~---------------------------~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 341 (596)
.+++|+.|+++++.... ..+..+. ..++|+.|++++|..... |.++. .+
T Consensus 169 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~--~l 245 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL--GL 245 (680)
T ss_dssp TTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG--GG
T ss_pred ccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh--cc
Confidence 34667777776653211 1111111 226778888888765543 33443 33
Q ss_pred --CCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616 342 --ENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED 404 (596)
Q Consensus 342 --~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 404 (596)
++|+.|++++|......+ .++.+++|+.|++++|...+..+..+.+ +++|+.|++.+
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~ 305 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG------LFNVRYLNLKR 305 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT------CTTCCEEECTT
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC------CCCccEEeccc
Confidence 348899998887544443 5778888999999887644444434433 78888888764
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.2e-24 Score=235.91 Aligned_cols=138 Identities=18% Similarity=0.160 Sum_probs=94.8
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
.+|..+.. ++++|++++|.++.+ |..|+++++|++|++++|......|..++++++|++|++++|......|..+++
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 67776643 799999999999977 568999999999999999444444778999999999999999943445677999
Q ss_pred CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccC
Q 007616 237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGN 303 (596)
Q Consensus 237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 303 (596)
+++|++|++.++..... ....+..+++|+ .+.+.+..-.. .....+.++++|+.|+++.+.
T Consensus 104 l~~L~~L~L~~n~i~~l-~~~~~~~l~~L~-~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSI-DFIPLHNQKTLE-SLYLGSNHISS----IKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp CTTCCEEECTTSCCSCG-GGSCCTTCTTCC-EEECCSSCCCC----CCCCTTCCCTTCCEEECCSSC
T ss_pred cccccEeeccccCcccC-CcchhccCCccc-EEECCCCcccc----cCcccccCCcccCEEEcccCc
Confidence 99999999876665441 012234445555 55555422111 000112235666666665554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2e-25 Score=238.96 Aligned_cols=391 Identities=20% Similarity=0.232 Sum_probs=249.9
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. ++|++|++++|.++.+ |..++.+++|++|++++| .+..+| ..++++++|++|++++|. +..+|.. +
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 94 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWF 94 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHH
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHh
Confidence 6787664 7999999999999976 568999999999999999 566555 679999999999999999 7777765 9
Q ss_pred cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616 235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK 314 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (596)
+++++|++|++.++..........+..+++|+ .+.+.+...... .....+.++++|+.|+++++. .....+..+.
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~-~L~L~~n~~~~~---~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 169 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ-TLRIGNVETFSE---IRRIDFAGLTSLNELEIKALS-LRNYQSQSLK 169 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC-EEEEEESSSCCE---ECTTTTTTCCEEEEEEEEETT-CCEECTTTTT
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCcc-EEECCCCccccc---cCHhhhhcccccCeeeccCCc-ccccChhhhh
Confidence 99999999998877665433333455666666 777765432221 112347788999999998876 3444566777
Q ss_pred CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCC----CCCCCCCCccceeeccCccCceEeCccccCCCC
Q 007616 315 PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTT----LPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC 390 (596)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 390 (596)
.+++|+.|+++++....+|.++.. .+++|+.|++++|...+. .+....+++|+.|++.++......+..... .
T Consensus 170 ~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--~ 246 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK--L 246 (549)
T ss_dssp TCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG--G
T ss_pred ccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH--H
Confidence 888999999999887766655421 578999999999885442 223456789999999887422211111100 1
Q ss_pred CCCCCCcceeecccCc----------------cccccceeEEecCCCCC----CCCC---CCCCCCCEEEEeeccC--hh
Q 007616 391 SEPFPSLETLCFEDMQ----------------EWEERIGLSIVRCPKLK----GRLP---QRFSSLERIVITSCEQ--LL 445 (596)
Q Consensus 391 ~~~~~~L~~L~l~~~~----------------~l~~~~~l~l~~c~~L~----~~~p---~~l~~L~~L~l~~c~~--l~ 445 (596)
...+++|+.+++.++. .+..+..+.+.++.--. ..++ ...++|+.|++++|.- ++
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip 326 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC
Confidence 1226778888877643 12222234443321000 0000 1246788888888752 23
Q ss_pred ccC-CCCCCcceEEecCCccc---------------ceeeEecccccc--------cccCCccccc--------cccccc
Q 007616 446 VSY-TALPPLCELEIDGFSEL---------------FLILQIQGWRSR--------AEILPQEIRI--------PNQESL 493 (596)
Q Consensus 446 ~~~-~~l~~L~~L~l~~c~~l---------------l~~l~~~~~~~l--------~~~~p~l~~l--------~~p~~~ 493 (596)
..+ ..+++|++|++++|... ++.++++++.-. ...+++|+.+ .+|..+
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 406 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCC
T ss_pred HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhh
Confidence 222 36899999999999742 344445443210 1223333333 233333
Q ss_pred --chhhhccccccccccccccceecccCCCCCCCCCCC--------CCCCCCCCCeeecCCCCCCccCCCCCCCCCccEE
Q 007616 494 --LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLS--------FVGNLTSLERLELPRCPVLRSFPENVLPPSLVYL 563 (596)
Q Consensus 494 --l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~--------~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L 563 (596)
+++|+.| ++++|. ++.++... .++|+.+. ....+++|++|++++| +++.+|....+++|++|
T Consensus 407 ~~~~~L~~L-~Ls~N~-----l~~l~~~~-~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L 478 (549)
T 2z81_A 407 QWPEKMRFL-NLSSTG-----IRVVKTCI-PQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVM 478 (549)
T ss_dssp CCCTTCCEE-ECTTSC-----CSCCCTTS-CTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEE
T ss_pred cccccccEE-ECCCCC-----cccccchh-cCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEE
Confidence 4555555 555554 23332210 12222221 1236788888888885 67788876567889999
Q ss_pred EEecC
Q 007616 564 SIYLC 568 (596)
Q Consensus 564 ~i~~C 568 (596)
++++|
T Consensus 479 ~Ls~N 483 (549)
T 2z81_A 479 KISRN 483 (549)
T ss_dssp ECCSS
T ss_pred ecCCC
Confidence 99887
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=3e-25 Score=240.54 Aligned_cols=385 Identities=16% Similarity=0.149 Sum_probs=236.2
Q ss_pred CCCCccccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccc-------------ccc--------
Q 007616 126 DGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEV-------------LSE-------- 184 (596)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-------------lp~-------- 184 (596)
.|+.+... ++++.+.+..+...+ .+|++++++++|++|+|++|.+.. +|.
T Consensus 73 ~GV~C~~~-~~V~~L~L~~~~l~g--------~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l 143 (636)
T 4eco_A 73 PGVSLNSN-GRVTGLSLEGFGASG--------RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143 (636)
T ss_dssp TTEEECTT-CCEEEEECTTSCCEE--------EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHT
T ss_pred CCeEEcCC-CCEEEEEecCcccCC--------cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHh
Confidence 55555432 678888887776665 789999999999999999996621 111
Q ss_pred -------------ccc-------------------cCCcCcEEEccc-cccccccCCcccCCCccceeecCCCCcccc--
Q 007616 185 -------------SVS-------------------TLYNLQTLILEY-CYRLKKLFPDIGNLVNLRHLKDSHSNLLEE-- 229 (596)
Q Consensus 185 -------------~i~-------------------~l~~L~~L~L~~-~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~-- 229 (596)
.++ ....++.+.+.. +..+..+|+.++++++|++|++++|. +..
T Consensus 144 ~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~ 222 (636)
T 4eco_A 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAEN 222 (636)
T ss_dssp HHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGG
T ss_pred hHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-ccccc
Confidence 111 011122222222 22565699999999999999999999 666
Q ss_pred ----------------cccccc--CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhh-HHHHhcCC
Q 007616 230 ----------------MPLRIG--KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAED-AKEAQLNG 290 (596)
Q Consensus 230 ----------------lp~~l~--~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~-~~~~~l~~ 290 (596)
+|..++ ++++|++|++.++.... .....+.++++|+ .+.+.+.... .. .++..+..
T Consensus 223 ~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~-~L~Ls~n~~l---~~~~lp~~~~~ 297 (636)
T 4eco_A 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQ-LINVACNRGI---SGEQLKDDWQA 297 (636)
T ss_dssp BSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCC-EEECTTCTTS---CHHHHHHHHHH
T ss_pred ccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCC-EEECcCCCCC---ccccchHHHHh
Confidence 999999 99999999998776533 2234555666666 7777654312 22 33444444
Q ss_pred ------ccccccccccccCCcchhhhh--ccCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-C
Q 007616 291 ------KKKLEALSPKWGNKIQTCVFE--MLKPHYGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-S 360 (596)
Q Consensus 291 ------~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~ 360 (596)
+++|+.|+++.+... .++. .+..+++|+.|++++|... .+| .+. .+++|+.|++++|... .+| .
T Consensus 298 L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~--~l~~L~~L~L~~N~l~-~lp~~ 371 (636)
T 4eco_A 298 LADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG--SEIKLASLNLAYNQIT-EIPAN 371 (636)
T ss_dssp HHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE--EEEEESEEECCSSEEE-ECCTT
T ss_pred hhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhC--CCCCCCEEECCCCccc-cccHh
Confidence 488888888887643 4555 6778888999999888877 777 444 6788889999888744 555 5
Q ss_pred CCCCCc-cceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC----------C
Q 007616 361 VGHLPS-LKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ----------R 429 (596)
Q Consensus 361 l~~l~~-L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~----------~ 429 (596)
++.+++ |+.|++++|. +..++..+.. ..+++|+.|+++++ ++.+..|. .
T Consensus 372 l~~l~~~L~~L~Ls~N~-l~~lp~~~~~----~~l~~L~~L~Ls~N---------------~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 372 FCGFTEQVENLSFAHNK-LKYIPNIFDA----KSVSVMSAIDFSYN---------------EIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp SEEECTTCCEEECCSSC-CSSCCSCCCT----TCSSCEEEEECCSS---------------CTTTTTTCSSCTTCSSCCC
T ss_pred hhhhcccCcEEEccCCc-Ccccchhhhh----cccCccCEEECcCC---------------cCCCcchhhhccccccccc
Confidence 778888 9999998876 3355543322 12447888888763 33333333 2
Q ss_pred CCCCCEEEEeeccC--hhc-cCCCCCCcceEEecCCcccceeeEecccccccc---cCCccccc--------cccccc--
Q 007616 430 FSSLERIVITSCEQ--LLV-SYTALPPLCELEIDGFSELFLILQIQGWRSRAE---ILPQEIRI--------PNQESL-- 493 (596)
Q Consensus 430 l~~L~~L~l~~c~~--l~~-~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~---~~p~l~~l--------~~p~~~-- 493 (596)
+++|+.|++++|.- ++. .+..+++|++|++++|... .+.......... .+++|+.+ .+|..+
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 34677777766642 221 1234667777777776522 111000000000 00011111 122221
Q ss_pred --chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCC------CCCCccCCCCC-CCCCccEEE
Q 007616 494 --LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPR------CPVLRSFPENV-LPPSLVYLS 564 (596)
Q Consensus 494 --l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~------c~~l~~lp~~~-~~~~L~~L~ 564 (596)
+++|+.| ++++|. ++.+|. .+..+++|++|++++ |...+.+|... .+++|++|+
T Consensus 510 ~~l~~L~~L-~Ls~N~-----l~~ip~-----------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 510 TTLPYLVGI-DLSYNS-----FSKFPT-----------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp TTCTTCCEE-ECCSSC-----CSSCCC-----------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred ccCCCcCEE-ECCCCC-----CCCcCh-----------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 4555555 555555 222433 466778888888854 33345556432 267888888
Q ss_pred EecCch
Q 007616 565 IYLCPY 570 (596)
Q Consensus 565 i~~C~~ 570 (596)
+++|.-
T Consensus 573 Ls~N~l 578 (636)
T 4eco_A 573 IGSNDI 578 (636)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 888754
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=8.4e-24 Score=232.32 Aligned_cols=107 Identities=21% Similarity=0.141 Sum_probs=73.3
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccC-CcccC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLF-PDIGN 212 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i~~ 212 (596)
.+++.+.+..+.... ..|..++++++|++|++++|.++.+|. .++.+++|++|++++| .+..+| ..+++
T Consensus 49 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 119 (680)
T 1ziw_A 49 SQLTSLDVGFNTISK--------LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVK 119 (680)
T ss_dssp TTCSEEECCSSCCCC--------CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTT
T ss_pred CcCcEEECCCCccCc--------cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccc
Confidence 356666665554433 345667778888888888888887775 4778888888888887 555555 45778
Q ss_pred CCccceeecCCCCccccccccccCCcccCCCCcEEecc
Q 007616 213 LVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGK 250 (596)
Q Consensus 213 L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~ 250 (596)
+++|++|++++|......|..++++++|++|++.++..
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 88888888888873333445577777888777655443
No 19
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.1e-23 Score=216.35 Aligned_cols=315 Identities=17% Similarity=0.117 Sum_probs=164.4
Q ss_pred cccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcc
Q 007616 160 PNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTS 239 (596)
Q Consensus 160 p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~ 239 (596)
+.+++.+++|++|++++|.++.+| .++.+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 344566777777777777777665 4667777777777777 566554 6677777777777776 55554 666777
Q ss_pred cCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCc
Q 007616 240 LRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGL 319 (596)
Q Consensus 240 L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 319 (596)
|++|++.++..... .+..+++|+ .+.+.+..- ... .+..+++|+.|+++.+...... .+..+++|
T Consensus 108 L~~L~L~~N~l~~l----~~~~l~~L~-~L~l~~N~l-~~l------~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L 172 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL----DVSQNPLLT-YLNCARNTL-TEI------DVSHNTQLTELDCHLNKKITKL---DVTPQTQL 172 (457)
T ss_dssp CCEEECCSSCCSCC----CCTTCTTCC-EEECTTSCC-SCC------CCTTCTTCCEEECTTCSCCCCC---CCTTCTTC
T ss_pred CCEEECCCCcCCee----cCCCCCcCC-EEECCCCcc-cee------ccccCCcCCEEECCCCCccccc---ccccCCcC
Confidence 77776654443221 122333333 333332111 000 1444555555555554321111 23445566
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcce
Q 007616 320 KELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLET 399 (596)
Q Consensus 320 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~ 399 (596)
+.|++++|....+| +. .+++|+.|++++|... .+ .++.+++|+.|++++|. ++.++ + ..+++|+.
T Consensus 173 ~~L~ls~n~l~~l~--l~--~l~~L~~L~l~~N~l~-~~-~l~~l~~L~~L~Ls~N~-l~~ip--~------~~l~~L~~ 237 (457)
T 3bz5_A 173 TTLDCSFNKITELD--VS--QNKLLNRLNCDTNNIT-KL-DLNQNIQLTFLDCSSNK-LTEID--V------TPLTQLTY 237 (457)
T ss_dssp CEEECCSSCCCCCC--CT--TCTTCCEEECCSSCCS-CC-CCTTCTTCSEEECCSSC-CSCCC--C------TTCTTCSE
T ss_pred CEEECCCCccceec--cc--cCCCCCEEECcCCcCC-ee-ccccCCCCCEEECcCCc-ccccC--c------cccCCCCE
Confidence 66666666555554 22 4556666666655522 22 25555666666666543 22232 1 11455555
Q ss_pred eecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCCcccceeeEecccccccc
Q 007616 400 LCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAE 479 (596)
Q Consensus 400 L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~ 479 (596)
|++++ +++++..+..+++|+.|++++ .+|+.|++++|. .+.
T Consensus 238 L~l~~---------------N~l~~~~~~~l~~L~~L~l~~-----------n~L~~L~l~~n~------------~~~- 278 (457)
T 3bz5_A 238 FDCSV---------------NPLTELDVSTLSKLTTLHCIQ-----------TDLLEIDLTHNT------------QLI- 278 (457)
T ss_dssp EECCS---------------SCCSCCCCTTCTTCCEEECTT-----------CCCSCCCCTTCT------------TCC-
T ss_pred EEeeC---------------CcCCCcCHHHCCCCCEEeccC-----------CCCCEEECCCCc------------cCC-
Confidence 55554 222322223344444444322 123333333333 111
Q ss_pred cCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCC
Q 007616 480 ILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPS 559 (596)
Q Consensus 480 ~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 559 (596)
.+|.+-+++|+.| ++++|+. ++.+|.. .++++.+. +.++++|++|++++| +++.++ -..+++
T Consensus 279 --------~~~~~~l~~L~~L-~Ls~n~~----l~~l~~~--~~~L~~L~-l~~~~~L~~L~L~~N-~l~~l~-l~~l~~ 340 (457)
T 3bz5_A 279 --------YFQAEGCRKIKEL-DVTHNTQ----LYLLDCQ--AAGITELD-LSQNPKLVYLYLNNT-ELTELD-VSHNTK 340 (457)
T ss_dssp --------EEECTTCTTCCCC-CCTTCTT----CCEEECT--TCCCSCCC-CTTCTTCCEEECTTC-CCSCCC-CTTCTT
T ss_pred --------cccccccccCCEE-ECCCCcc----cceeccC--CCcceEec-hhhcccCCEEECCCC-cccccc-cccCCc
Confidence 1222226677777 7777776 6666642 45555553 666677777777763 455554 233567
Q ss_pred ccEEEEecC
Q 007616 560 LVYLSIYLC 568 (596)
Q Consensus 560 L~~L~i~~C 568 (596)
|+.|+++++
T Consensus 341 L~~L~l~~N 349 (457)
T 3bz5_A 341 LKSLSCVNA 349 (457)
T ss_dssp CSEEECCSS
T ss_pred CcEEECCCC
Confidence 777776654
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.5e-23 Score=222.96 Aligned_cols=117 Identities=25% Similarity=0.247 Sum_probs=93.1
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCccc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIG 211 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~ 211 (596)
.+.+++.+.+..+.+.. ..|..|+.+++|++|++++|.++.+ |..++.+++|++|++++| .+..+|..
T Consensus 50 ~~~~L~~L~Ls~N~i~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISE--------LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-- 118 (562)
T ss_dssp SCTTCCEEECCSSCCCC--------CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--
T ss_pred CCCCcCEEECCCCCccc--------cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--
Confidence 34677888887776553 2346789999999999999999977 677899999999999999 78899887
Q ss_pred CCCccceeecCCCCcccccc--ccccCCcccCCCCcEEeccCCCCCchhccch
Q 007616 212 NLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVVGKGNCSGLKELRSL 262 (596)
Q Consensus 212 ~L~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L 262 (596)
.+++|++|++++|. +..+| ..++++++|++|++.++.... ..+..+.++
T Consensus 119 ~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L 169 (562)
T 3a79_B 119 PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL 169 (562)
T ss_dssp CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS
T ss_pred ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc
Confidence 89999999999998 66654 679999999999988776543 334444444
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.8e-23 Score=223.37 Aligned_cols=350 Identities=20% Similarity=0.157 Sum_probs=223.8
Q ss_pred cccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccc--ccCCcccCCCccceeecCCCCcccccc-cccc
Q 007616 160 PNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLK--KLFPDIGNLVNLRHLKDSHSNLLEEMP-LRIG 235 (596)
Q Consensus 160 p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~l~ 235 (596)
|..|+.+++|++|++++|.++.+|. .++.+++|++|++++| .+. .+|..++++++|++|++++|. +..++ ..++
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 170 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 170 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHHHcc
Confidence 4678999999999999999998875 6899999999999999 555 478999999999999999998 66654 5588
Q ss_pred CCccc----CCCCcEEeccCCCCCchhccchhhccceEEEcCc---------------------------CCC-------
Q 007616 236 KLTSL----RTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGL---------------------------ENV------- 277 (596)
Q Consensus 236 ~l~~L----~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~---------------------------~~~------- 277 (596)
.+++| ++|++.++...... ...+... .++ .+.+.+. ...
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~~~-~~~~~~~-~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNFIQ-PGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCEEC-TTTTTTC-EEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred chhccchhhhhcccCCCCceecC-HHHhccC-cce-eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 88887 55554333222100 0000000 111 1111110 000
Q ss_pred --------------------CCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCC
Q 007616 278 --------------------NDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLG 337 (596)
Q Consensus 278 --------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 337 (596)
....+.....+..+++|+.|+++.+... ..+..+... +|+.|++++|....+|.+
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~~~~~-~L~~L~l~~n~~~~l~~~-- 322 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE--RVKDFSYNF-GWQHLELVNCKFGQFPTL-- 322 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC--SCCBCCSCC-CCSEEEEESCBCSSCCBC--
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch--hhhhhhccC-CccEEeeccCcccccCcc--
Confidence 0001112234566788999999877432 345556666 999999999998877763
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEe--CccccCCCCCCCCCCcceeecccCc---------
Q 007616 338 QSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSV--GLEFCGNYCSEPFPSLETLCFEDMQ--------- 406 (596)
Q Consensus 338 ~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~--------- 406 (596)
.+++|+.|++++|......+. +.+++|+.|++++|...... +..+.+ +++|+.|+++++.
T Consensus 323 --~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~~~ 393 (570)
T 2z63_A 323 --KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFG------TTSLKYLDLSFNGVITMSSNFL 393 (570)
T ss_dssp --BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHT------CSCCCEEECCSCSEEEEEEEEE
T ss_pred --cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccc------cCccCEEECCCCcccccccccc
Confidence 678999999999886555544 77889999999887533221 222322 6778888777642
Q ss_pred cccccceeEEecCCCCCCCCC----CCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCCcccceeeEecccccccc
Q 007616 407 EWEERIGLSIVRCPKLKGRLP----QRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAE 479 (596)
Q Consensus 407 ~l~~~~~l~l~~c~~L~~~~p----~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~ 479 (596)
.+..+..+.+.++ .+.+..| ..+++|+.|++++|.. .+..+..+++|++|++++|......+ +....
T Consensus 394 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----p~~~~ 467 (570)
T 2z63_A 394 GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-----PDIFT 467 (570)
T ss_dssp TCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-----CSCCT
T ss_pred ccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc-----hhhhh
Confidence 2222234444443 2222222 3578888898888863 24567778889999988886321011 01111
Q ss_pred cCCccccc---------cccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCC
Q 007616 480 ILPQEIRI---------PNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVL 548 (596)
Q Consensus 480 ~~p~l~~l---------~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l 548 (596)
.+++|+.+ ..|..+ +++|+.| ++++|. ++.++.. .+..+++|++|++++|+--
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~-----l~~~~~~----------~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL-NMASNQ-----LKSVPDG----------IFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSC-----CSCCCTT----------TTTTCTTCCEEECCSSCBC
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEE-eCCCCc-----CCCCCHH----------HhhcccCCcEEEecCCccc
Confidence 22222222 123333 7899999 999997 5555442 5778999999999998644
Q ss_pred cc
Q 007616 549 RS 550 (596)
Q Consensus 549 ~~ 550 (596)
..
T Consensus 532 ~~ 533 (570)
T 2z63_A 532 CS 533 (570)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1e-23 Score=211.91 Aligned_cols=301 Identities=17% Similarity=0.165 Sum_probs=155.1
Q ss_pred cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCC
Q 007616 164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 243 (596)
..+++|+.|+++++.+..+|. ++.+++|++|++++| .+..+|. ++++++|++|++++|. +..+| .+.++++|++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEE
Confidence 345555555555555555543 555555666666555 4555544 5555555666665554 44443 35555555555
Q ss_pred CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616 244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK 323 (596)
Q Consensus 244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 323 (596)
++.++..... .. +..+++|+.|+++++.... .+..+..+++|+.|+
T Consensus 116 ~l~~n~i~~~---~~-----------------------------~~~l~~L~~L~l~~n~~~~--~~~~~~~l~~L~~L~ 161 (347)
T 4fmz_A 116 YLNEDNISDI---SP-----------------------------LANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLT 161 (347)
T ss_dssp ECTTSCCCCC---GG-----------------------------GTTCTTCCEEECTTCTTCC--CCGGGTTCTTCCEEE
T ss_pred ECcCCcccCc---hh-----------------------------hccCCceeEEECCCCCCcc--cccchhhCCCCcEEE
Confidence 5432221110 00 2223333344443332111 112234455556666
Q ss_pred EeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecc
Q 007616 324 VRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFE 403 (596)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 403 (596)
+++|....++. +. .+++|+.|++++|. .+.++.+..+++|+.|++++|.. ..++. + ..+++|+.|+++
T Consensus 162 l~~~~~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~~-~------~~~~~L~~L~l~ 229 (347)
T 4fmz_A 162 VTESKVKDVTP-IA--NLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQI-TDITP-V------ANMTRLNSLKIG 229 (347)
T ss_dssp CCSSCCCCCGG-GG--GCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCC-CCCGG-G------GGCTTCCEEECC
T ss_pred ecCCCcCCchh-hc--cCCCCCEEEccCCc-ccccccccCCCccceeecccCCC-CCCch-h------hcCCcCCEEEcc
Confidence 65555544443 22 45566666666654 33344455566666666665432 22211 1 115566666655
Q ss_pred cCccccccceeEEecCCCCCCCCC--CCCCCCCEEEEeeccCh-hccCCCCCCcceEEecCCcccceeeEeccccccccc
Q 007616 404 DMQEWEERIGLSIVRCPKLKGRLP--QRFSSLERIVITSCEQL-LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEI 480 (596)
Q Consensus 404 ~~~~l~~~~~l~l~~c~~L~~~~p--~~l~~L~~L~l~~c~~l-~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~ 480 (596)
++. ++ .++ ..+++|+.|++++|.-- ...+..+++|++|++++|... +.+.+.
T Consensus 230 ~n~---------------l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~-- 284 (347)
T 4fmz_A 230 NNK---------------IT-DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS-------DISVLN-- 284 (347)
T ss_dssp SSC---------------CC-CCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-------CCGGGG--
T ss_pred CCc---------------cC-CCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccC-------CChhhc--
Confidence 531 11 111 24566777777666421 234666777888888777511 111000
Q ss_pred CCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCc
Q 007616 481 LPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSL 560 (596)
Q Consensus 481 ~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L 560 (596)
.+++|+.| ++++|.. .+..+. .+..+++|++|++++|+ ++.++....+++|
T Consensus 285 ------------~l~~L~~L-~L~~n~l----~~~~~~-----------~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L 335 (347)
T 4fmz_A 285 ------------NLSQLNSL-FLNNNQL----GNEDME-----------VIGGLTNLTTLFLSQNH-ITDIRPLASLSKM 335 (347)
T ss_dssp ------------GCTTCSEE-ECCSSCC----CGGGHH-----------HHHTCTTCSEEECCSSS-CCCCGGGGGCTTC
T ss_pred ------------CCCCCCEE-ECcCCcC----CCcChh-----------HhhccccCCEEEccCCc-cccccChhhhhcc
Confidence 06777888 8888874 222222 35667888888888865 6666554447788
Q ss_pred cEEEEecCc
Q 007616 561 VYLSIYLCP 569 (596)
Q Consensus 561 ~~L~i~~C~ 569 (596)
++|++++|+
T Consensus 336 ~~L~l~~N~ 344 (347)
T 4fmz_A 336 DSADFANQV 344 (347)
T ss_dssp SEESSSCC-
T ss_pred ceeehhhhc
Confidence 888888775
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=6.7e-23 Score=214.28 Aligned_cols=320 Identities=20% Similarity=0.254 Sum_probs=231.8
Q ss_pred cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCC
Q 007616 164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 243 (596)
..+++++.|+++++.+..+|. +..+++|++|++++| .+..+|. ++++++|++|++++|. +..++. ++++++|++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEE
Confidence 457899999999999999875 889999999999999 7888877 9999999999999998 777777 9999999999
Q ss_pred CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616 244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK 323 (596)
Q Consensus 244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 323 (596)
++.++...... .+..+++|+ .+.+.+..- ... ..+..+++|+.|++.... . ....+..+++|+.|+
T Consensus 118 ~L~~n~l~~~~---~~~~l~~L~-~L~l~~n~l-~~~-----~~~~~l~~L~~L~l~~~~-~---~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 118 TLFNNQITDID---PLKNLTNLN-RLELSSNTI-SDI-----SALSGLTSLQQLSFGNQV-T---DLKPLANLTTLERLD 183 (466)
T ss_dssp ECCSSCCCCCG---GGTTCTTCS-EEEEEEEEE-CCC-----GGGTTCTTCSEEEEEESC-C---CCGGGTTCTTCCEEE
T ss_pred ECCCCCCCCCh---HHcCCCCCC-EEECCCCcc-CCC-----hhhccCCcccEeecCCcc-c---CchhhccCCCCCEEE
Confidence 98776554433 245555555 566554321 111 136778888888886321 1 122367788899999
Q ss_pred EeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecc
Q 007616 324 VRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFE 403 (596)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 403 (596)
+++|....++. +. .+++|++|++++|... .++.++.+++|+.|++++|. ++.++ .+ ..+++|+.|+++
T Consensus 184 l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~l------~~l~~L~~L~l~ 251 (466)
T 1o6v_A 184 ISSNKVSDISV-LA--KLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQ-LKDIG-TL------ASLTNLTDLDLA 251 (466)
T ss_dssp CCSSCCCCCGG-GG--GCTTCSEEECCSSCCC-CCGGGGGCTTCCEEECCSSC-CCCCG-GG------GGCTTCSEEECC
T ss_pred CcCCcCCCChh-hc--cCCCCCEEEecCCccc-ccccccccCCCCEEECCCCC-cccch-hh------hcCCCCCEEECC
Confidence 99988776654 33 6788999999988744 34447778899999998875 33332 12 227888888888
Q ss_pred cCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccCh-hccCCCCCCcceEEecCCcccceeeEecccccccccC
Q 007616 404 DMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQL-LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEIL 481 (596)
Q Consensus 404 ~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~l-~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~ 481 (596)
++. +.+..| ..+++|+.|++++|.-- ...+..+++|++|++++|... +..
T Consensus 252 ~n~---------------l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~-------~~~------ 303 (466)
T 1o6v_A 252 NNQ---------------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-------DIS------ 303 (466)
T ss_dssp SSC---------------CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCS-------CCG------
T ss_pred CCc---------------cccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCccc-------Cch------
Confidence 742 221111 35789999999988622 122778899999999988621 111
Q ss_pred CcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCcc
Q 007616 482 PQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLV 561 (596)
Q Consensus 482 p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~ 561 (596)
+-.-+++|+.| ++++|.. ..++ .+..+++|++|++++| .++.++....+++|+
T Consensus 304 --------~~~~l~~L~~L-~L~~n~l-----~~~~------------~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~ 356 (466)
T 1o6v_A 304 --------PISNLKNLTYL-TLYFNNI-----SDIS------------PVSSLTKLQRLFFYNN-KVSDVSSLANLTNIN 356 (466)
T ss_dssp --------GGGGCTTCSEE-ECCSSCC-----SCCG------------GGGGCTTCCEEECCSS-CCCCCGGGTTCTTCC
T ss_pred --------hhcCCCCCCEE-ECcCCcC-----CCch------------hhccCccCCEeECCCC-ccCCchhhccCCCCC
Confidence 11117889999 9999974 3222 2567899999999997 577776555589999
Q ss_pred EEEEecCc
Q 007616 562 YLSIYLCP 569 (596)
Q Consensus 562 ~L~i~~C~ 569 (596)
+|++++|+
T Consensus 357 ~L~l~~n~ 364 (466)
T 1o6v_A 357 WLSAGHNQ 364 (466)
T ss_dssp EEECCSSC
T ss_pred EEeCCCCc
Confidence 99999985
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=5.8e-23 Score=218.24 Aligned_cols=370 Identities=14% Similarity=0.084 Sum_probs=217.1
Q ss_pred cCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLRIG 235 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~l~ 235 (596)
.+|..+. ++|++|++++|.++.++ ..+..+++|++|++++| .+..+ |..++++++|++|++++|. ++.+|..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-- 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVKISCH-- 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eeecCcc--
Confidence 5777665 89999999999999876 68999999999999999 56655 7789999999999999998 8899987
Q ss_pred CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc--ccccccccCCc-chhhhhc
Q 007616 236 KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL--EALSPKWGNKI-QTCVFEM 312 (596)
Q Consensus 236 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~~-~~~~~~~ 312 (596)
.+++|++|++.++..........+..+++|+ .+.+.+..- . . ..+..+++| +.|+++++... ....+..
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~-~L~L~~n~l-~---~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLK-FLGLSTTHL-E---K---SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC-EEEEEESSC-C---G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred ccCCccEEeccCCccccccchhhhccCCcce-EEEecCccc-c---h---hhccccccceeeEEEeeccccccccccccc
Confidence 8999999998877765433334566666666 666665321 1 1 235556666 88888776420 1222223
Q ss_pred cCCCC-CccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCC-------CCCCCCCCCCCC------------------
Q 007616 313 LKPHY-GLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCN-------QCTTLPSVGHLP------------------ 365 (596)
Q Consensus 313 l~~~~-~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-------~~~~l~~l~~l~------------------ 365 (596)
+..+. ....++++++... .++.... ..+++|+.+++++|. ..+.++.++.++
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 32222 1112333333322 1222111 246667777776664 111122333333
Q ss_pred ---------ccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCcc-c-----------cccceeEEecCCCCCC
Q 007616 366 ---------SLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQE-W-----------EERIGLSIVRCPKLKG 424 (596)
Q Consensus 366 ---------~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l-----------~~~~~l~l~~c~~L~~ 424 (596)
+|+.|++++|...+.++..+... ....+++|+.+++.+..- + ..+..+.+.++.-...
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDY-SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC-CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhc-ccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc
Confidence 44455554443222333332110 002256666666554321 0 1233566666543222
Q ss_pred CCCCCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCCcccceeeEecccccc---cccCCccccc---------cc
Q 007616 425 RLPQRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGFSELFLILQIQGWRSR---AEILPQEIRI---------PN 489 (596)
Q Consensus 425 ~~p~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l---~~~~p~l~~l---------~~ 489 (596)
..+..+++|++|++++|.- .+..+..+++|++|++++|... +.+.+ ...+++|+.+ .+
T Consensus 318 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-------ELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-------BHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-------ccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 2236789999999998862 3566788999999999988622 11100 0111222211 02
Q ss_pred cccc---chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCC-CCCCccEEEE
Q 007616 490 QESL---LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENV-LPPSLVYLSI 565 (596)
Q Consensus 490 p~~~---l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~L~~L~i 565 (596)
|... +++|+.| ++++|.. .+.+|. .+. ++|++|++++| +++.+|... .+++|++|++
T Consensus 391 ~~~~~~~l~~L~~L-~Ls~N~l----~~~~~~-----------~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 391 KKGDCSWTKSLLSL-NMSSNIL----TDTIFR-----------CLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNV 451 (520)
T ss_dssp GGCSCCCCTTCCEE-ECCSSCC----CGGGGG-----------SCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEEC
T ss_pred ccchhccCccCCEE-ECcCCCC----Ccchhh-----------hhc--ccCCEEECCCC-cccccchhhhcCCCCCEEEC
Confidence 2221 3444444 4444443 122222 111 68999999985 677888643 3789999999
Q ss_pred ecCc
Q 007616 566 YLCP 569 (596)
Q Consensus 566 ~~C~ 569 (596)
++|.
T Consensus 452 ~~N~ 455 (520)
T 2z7x_B 452 ASNQ 455 (520)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 9883
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.2e-23 Score=217.73 Aligned_cols=344 Identities=15% Similarity=0.127 Sum_probs=196.3
Q ss_pred CCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcc-cc-ccccccCCcCcEEEccccccccccCCccc
Q 007616 134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-VL-SESVSTLYNLQTLILEYCYRLKKLFPDIG 211 (596)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~-~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~ 211 (596)
+.+++.+.+..+.+.. ..|..|+++++|++|++++|.+. .+ |..++.+++|++|++++|......|..++
T Consensus 29 ~~~l~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAE--------LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CTTCCEEECCSSCCCE--------ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CCccCEEEecCCccCc--------CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 3455555555444332 23455566666666666666554 33 34456666666666666622222345566
Q ss_pred CCCccceeecCCCCcccccccc--ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616 212 NLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 289 (596)
Q Consensus 212 ~L~~L~~L~l~~~~~l~~lp~~--l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 289 (596)
++++|++|++++|...+.+|.. ++++++|++|++.++........ ..+.
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------------------------~~~~ 151 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-----------------------------SFFL 151 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC-----------------------------GGGG
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc-----------------------------cccC
Confidence 6666666666666522223333 55566666665543332211100 0144
Q ss_pred CccccccccccccCCcchhhhhccCCC--CCccEEEEeccCCCCCCCCCC-------CCCCCCccEEEEecCCCCCCCC-
Q 007616 290 GKKKLEALSPKWGNKIQTCVFEMLKPH--YGLKELKVRGYGGTKFPAWLG-------QSSFENLVVLRFKNCNQCTTLP- 359 (596)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~l~- 359 (596)
.+++|+.|+++++.. ....+..+..+ .+|+.|+++++....++.... ...+++|+.|++++|...+..+
T Consensus 152 ~l~~L~~L~L~~n~l-~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 152 NMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp GCTTCCEEECTTCCB-SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred CCCcccEEeCCCCcc-cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 566677777766542 11222222222 578888888887666554321 0145688899998887554333
Q ss_pred C---CCCCCccceeeccCccCceEeCccc-cCC-----CCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC---
Q 007616 360 S---VGHLPSLKNLVIKGMAKVKSVGLEF-CGN-----YCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP--- 427 (596)
Q Consensus 360 ~---l~~l~~L~~L~L~~~~~l~~~~~~~-~~~-----~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p--- 427 (596)
. ....++|+.|++++|.......... ... ......++|+.|+++++ ++.+..|
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n---------------~l~~~~~~~~ 295 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS---------------KIFALLKSVF 295 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS---------------CCCEECTTTT
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc---------------cccccchhhc
Confidence 1 1223788888888775433211000 000 00011356777776663 2332233
Q ss_pred CCCCCCCEEEEeeccCh---hccCCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhcccc
Q 007616 428 QRFSSLERIVITSCEQL---LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSH 502 (596)
Q Consensus 428 ~~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~ 502 (596)
..+++|+.|++++|.-- +..+..+++|++|++++|... + ..|..+ +++|+.| +
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~--------------~~~~~~~~l~~L~~L-~ 353 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-------S--------------IDSRMFENLDKLEVL-D 353 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-------E--------------ECGGGGTTCTTCCEE-E
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-------C--------------cChhHhcCcccCCEE-E
Confidence 35788999999887632 456778899999999998621 1 011222 7889999 9
Q ss_pred ccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecC
Q 007616 503 ITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLC 568 (596)
Q Consensus 503 l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C 568 (596)
+++|. ++.++.. .+..+++|++|++++ ++++.+|...+ +++|++|+++++
T Consensus 354 Ls~N~-----l~~~~~~----------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 354 LSYNH-----IRALGDQ----------SFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCSSC-----CCEECTT----------TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCc-----ccccChh----------hccccccccEEECCC-CccccCCHhHhccCCcccEEEccCC
Confidence 99987 4444322 577899999999999 46888887543 789999999865
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.4e-22 Score=210.17 Aligned_cols=344 Identities=15% Similarity=0.157 Sum_probs=233.2
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 214 (596)
.+++.+.+..+.+. .+| .++.+++|++|++++|.++.+| ++.+++|++|++++| .+..+| +++++
T Consensus 42 ~~L~~L~Ls~n~l~---------~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT---------DMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLT 106 (457)
T ss_dssp TTCCEEECCSSCCC---------CCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCT
T ss_pred CCCCEEEccCCCcc---------cCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCC
Confidence 45677777665444 345 5889999999999999999986 889999999999999 677775 89999
Q ss_pred ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL 294 (596)
Q Consensus 215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L 294 (596)
+|++|++++|. +..+| ++.+++|++|++.++..... .+..++.|+ .+.+......... .+..+++|
T Consensus 107 ~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~-~L~l~~n~~~~~~------~~~~l~~L 172 (457)
T 3bz5_A 107 KLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEI----DVSHNTQLT-ELDCHLNKKITKL------DVTPQTQL 172 (457)
T ss_dssp TCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCC----CCTTCTTCC-EEECTTCSCCCCC------CCTTCTTC
T ss_pred cCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcccee----ccccCCcCC-EEECCCCCccccc------ccccCCcC
Confidence 99999999998 77776 88999999998876655442 245556666 7777665433322 36788999
Q ss_pred ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccC
Q 007616 295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG 374 (596)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~ 374 (596)
+.|+++++..... + +..+++|+.|++++|....++ +. .+++|+.|++++|... .+| ++.+++|+.|++++
T Consensus 173 ~~L~ls~n~l~~l---~-l~~l~~L~~L~l~~N~l~~~~--l~--~l~~L~~L~Ls~N~l~-~ip-~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 173 TTLDCSFNKITEL---D-VSQNKLLNRLNCDTNNITKLD--LN--QNIQLTFLDCSSNKLT-EID-VTPLTQLTYFDCSV 242 (457)
T ss_dssp CEEECCSSCCCCC---C-CTTCTTCCEEECCSSCCSCCC--CT--TCTTCSEEECCSSCCS-CCC-CTTCTTCSEEECCS
T ss_pred CEEECCCCcccee---c-cccCCCCCEEECcCCcCCeec--cc--cCCCCCEEECcCCccc-ccC-ccccCCCCEEEeeC
Confidence 9999998864332 1 677899999999999887764 33 7899999999999844 477 88999999999999
Q ss_pred ccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccChhccCCCCCC
Q 007616 375 MAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQLLVSYTALPP 453 (596)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~l~~~~~~l~~ 453 (596)
|. ++.++. ..+++|+.|++++. +++ .+.+.+|+.+. .+| ..+++|+.|++++|..+.......++
T Consensus 243 N~-l~~~~~--------~~l~~L~~L~l~~n-~L~---~L~l~~n~~~~-~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 243 NP-LTELDV--------STLSKLTTLHCIQT-DLL---EIDLTHNTQLI-YFQAEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp SC-CSCCCC--------TTCTTCCEEECTTC-CCS---CCCCTTCTTCC-EEECTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred Cc-CCCcCH--------HHCCCCCEEeccCC-CCC---EEECCCCccCC-cccccccccCCEEECCCCcccceeccCCCc
Confidence 75 333332 23788888877652 222 44555554333 444 46788888888888755333334455
Q ss_pred cceEEecCCcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCC----
Q 007616 454 LCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLS---- 529 (596)
Q Consensus 454 L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~---- 529 (596)
|+.|++++|+.+ +.+.++++. +++ ++-.-+++|+.| +++++.. +.++. |..++
T Consensus 309 L~~L~l~~~~~L-~~L~L~~N~-l~~---------l~l~~l~~L~~L-~l~~N~l-----~~l~~------L~~L~l~~n 365 (457)
T 3bz5_A 309 ITELDLSQNPKL-VYLYLNNTE-LTE---------LDVSHNTKLKSL-SCVNAHI-----QDFSS------VGKIPALNN 365 (457)
T ss_dssp CSCCCCTTCTTC-CEEECTTCC-CSC---------CCCTTCTTCSEE-ECCSSCC-----CBCTT------GGGSSGGGT
T ss_pred ceEechhhcccC-CEEECCCCc-ccc---------cccccCCcCcEE-ECCCCCC-----CCccc------cccccccCC
Confidence 555555555432 333333321 111 111116677777 7777663 22221 22221
Q ss_pred ---CCCCCCCCCeeecCCCCCCccCCCC
Q 007616 530 ---FVGNLTSLERLELPRCPVLRSFPEN 554 (596)
Q Consensus 530 ---~~~~l~~L~~L~l~~c~~l~~lp~~ 554 (596)
+...+.+|+.+++++++--..+|..
T Consensus 366 ~l~g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 366 NFEAEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp SEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred cEEecceeeecCccccccCcEEEEcChh
Confidence 2224466777888875544567764
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=226.65 Aligned_cols=305 Identities=15% Similarity=0.052 Sum_probs=200.0
Q ss_pred ccccCCCCccccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCC-cccc-ccccccCCcCcEEEccc
Q 007616 122 ESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTA-IEVL-SESVSTLYNLQTLILEY 199 (596)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~l~~L~~L~L~~ 199 (596)
..+|..+.. .+.+++.|.+..+.+.. ..|.+|..+++|++|++++|. +..+ |..++++++|++|+|++
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~--------i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRT--------VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCE--------ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCc--------cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 334555554 77889999998876664 357789999999999999994 4566 67899999999999999
Q ss_pred cccccccCCcccCCCccceeecCCCCcccccccc--ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCC
Q 007616 200 CYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENV 277 (596)
Q Consensus 200 ~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~--l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~ 277 (596)
|......|..++++++|++|++++|.....+|.. ++++++|++|++.++..........+.++++|+ .+.+.+..-.
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~-~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC-EEEEESSCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC-EEECCCCcCC
Confidence 9433444888999999999999999844446665 899999999999888765543334566777777 7777664322
Q ss_pred CCHhhHHHHhcCCc--cccccccccccCCcchhhhhccCCCC------CccEEEEeccCCC-CCCCCCCC----------
Q 007616 278 NDAEDAKEAQLNGK--KKLEALSPKWGNKIQTCVFEMLKPHY------GLKELKVRGYGGT-KFPAWLGQ---------- 338 (596)
Q Consensus 278 ~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~-~~~~~~~~---------- 338 (596)
... ...+..+ ++|+.|+++.+.. ....+..+..++ .|+.|++++|... ..+..+..
T Consensus 162 ~~~----~~~l~~l~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 162 LVC----EHELEPLQGKTLSFFSLAANSL-YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp CCC----SGGGHHHHHCSSCCCEECCSBS-CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred eeC----HHHcccccCCccceEECCCCcc-ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 111 1122223 6889999987753 222222333333 4999999988532 12221110
Q ss_pred --------------------------CCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCC
Q 007616 339 --------------------------SSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCS 391 (596)
Q Consensus 339 --------------------------~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 391 (596)
...++|+.|++++|......+ .++.+++|+.|++++|......+..+.+
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~---- 312 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG---- 312 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT----
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC----
Confidence 012567777777766443333 4666777777777776433332333322
Q ss_pred CCCCCcceeecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeeccC--h-hccCCCCCCcceEEecCCc
Q 007616 392 EPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCEQ--L-LVSYTALPPLCELEIDGFS 463 (596)
Q Consensus 392 ~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~l~~c~ 463 (596)
+++|+.|+++++ ++.+..| ..+++|+.|++++|.- + +..+..+++|++|++++|.
T Consensus 313 --l~~L~~L~Ls~N---------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 313 --LDNLQVLNLSYN---------------LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp --CSSCCEEEEESC---------------CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred --CCCCCEEECCCC---------------CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 667777766653 2332222 3577888888887752 1 2346678888888888876
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=7.3e-22 Score=215.25 Aligned_cols=109 Identities=22% Similarity=0.263 Sum_probs=74.2
Q ss_pred ccCCceeEEEEecccccccccccccccCc-ccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCCc
Q 007616 132 RFSRNLRHLSYLTSRFDGIKRFEGLHELP-NDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFPD 209 (596)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~ 209 (596)
.+|..++.|.+..+.+.. +| .+|.++++|++|+|++|.|+.+|+ .|+++++|++|+|++| .++.+|..
T Consensus 49 ~lp~~~~~LdLs~N~i~~---------l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~ 118 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRH---------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALG 118 (635)
T ss_dssp SSCTTCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGG
T ss_pred CCCcCCCEEEeeCCCCCC---------CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHH
Confidence 456678888887776653 33 456777777777777777776654 4677777777777777 56666643
Q ss_pred -ccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccC
Q 007616 210 -IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKG 251 (596)
Q Consensus 210 -i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~ 251 (596)
++++++|++|++++|. +..+|.. ++++++|++|++.++...
T Consensus 119 ~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp GGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred HhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccc
Confidence 6777777777777776 6666654 677777777776655543
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=4.8e-22 Score=208.72 Aligned_cols=204 Identities=21% Similarity=0.210 Sum_probs=126.5
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. +++++|++++|.++.+ |..+..+++|++|++++| .+..+ |..++++++|++|++++|. +..+|.+ +
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 100 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF 100 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence 5666553 5889999999999877 467888999999999998 55555 6778899999999999988 7788765 6
Q ss_pred cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616 235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK 314 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (596)
+++++|++|++.++.... + ....+..+++|+.|+++.+.. .......+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~------~------------------------~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~ 149 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVI------L------------------------LDYMFQDLYNLKSLEVGDNDL-VYISHRAFS 149 (477)
T ss_dssp TTCTTCCEEECTTSCCCE------E------------------------CTTTTTTCTTCCEEEECCTTC-CEECTTSST
T ss_pred cCCCCCCEEECCCCcccc------C------------------------ChhHccccccCCEEECCCCcc-ceeChhhcc
Confidence 788888888764332210 0 001134445555555554432 222233445
Q ss_pred CCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616 315 PHYGLKELKVRGYGGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE 392 (596)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 392 (596)
.+++|+.|++++|....++.. +. .+++|+.|++++|......+ .++.+++|+.|++++|..++.++.....
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----- 222 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY----- 222 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-----
T ss_pred CCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-----
Confidence 556666666666665555432 22 45666666666665333222 4556666666666666665555543322
Q ss_pred CCCCcceeeccc
Q 007616 393 PFPSLETLCFED 404 (596)
Q Consensus 393 ~~~~L~~L~l~~ 404 (596)
..+|+.|++++
T Consensus 223 -~~~L~~L~l~~ 233 (477)
T 2id5_A 223 -GLNLTSLSITH 233 (477)
T ss_dssp -TCCCSEEEEES
T ss_pred -CccccEEECcC
Confidence 23555555554
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=5.7e-22 Score=199.11 Aligned_cols=276 Identities=18% Similarity=0.215 Sum_probs=189.7
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 214 (596)
.+++.+.+.++... .+| .+..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+++++
T Consensus 44 ~~L~~L~l~~~~i~---------~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 44 ESITKLVVAGEKVA---------SIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLT 110 (347)
T ss_dssp TTCSEEECCSSCCC---------CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCT
T ss_pred ccccEEEEeCCccc---------cch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCC
Confidence 45677777665444 344 37889999999999999998887 899999999999999 777775 589999
Q ss_pred ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL 294 (596)
Q Consensus 215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L 294 (596)
+|++|++++|. +..+|. +..+++|++|++.++... ..+..+..++.|+ .+.+.+...... . .+..+++|
T Consensus 111 ~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~--~~~~~~~~l~~L~-~L~l~~~~~~~~-~-----~~~~l~~L 179 (347)
T 4fmz_A 111 NLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNL--SDLSPLSNMTGLN-YLTVTESKVKDV-T-----PIANLTDL 179 (347)
T ss_dssp TCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTC--CCCGGGTTCTTCC-EEECCSSCCCCC-G-----GGGGCTTC
T ss_pred cCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCc--ccccchhhCCCCc-EEEecCCCcCCc-h-----hhccCCCC
Confidence 99999999998 778776 888999999987655322 2233355555565 666655432221 1 15677788
Q ss_pred ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccC
Q 007616 295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG 374 (596)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~ 374 (596)
+.|+++++...... .+..+++|+.|++++|....++. +. .+++|+.|++++|. ++.++.++.+++|+.|++++
T Consensus 180 ~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~--~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 180 YSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQITDITP-VA--NMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGT 252 (347)
T ss_dssp SEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCS
T ss_pred CEEEccCCcccccc---cccCCCccceeecccCCCCCCch-hh--cCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCC
Confidence 88888776533222 25567788888888887766654 33 57788888888876 34445577788888888887
Q ss_pred ccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccCh---hccCCCC
Q 007616 375 MAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQL---LVSYTAL 451 (596)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l---~~~~~~l 451 (596)
|. +..++ .+ ..+++|+.|+++++. +..+. . -..+++|+.|++++|.-. +..+..+
T Consensus 253 n~-l~~~~-~~------~~l~~L~~L~l~~n~-l~~~~--------~-----~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 253 NQ-ISDIN-AV------KDLTKLKMLNVGSNQ-ISDIS--------V-----LNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp SC-CCCCG-GG------TTCTTCCEEECCSSC-CCCCG--------G-----GGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred Cc-cCCCh-hH------hcCCCcCEEEccCCc-cCCCh--------h-----hcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 64 33331 12 237788888777641 21110 0 124678888888887632 3446677
Q ss_pred CCcceEEecCCc
Q 007616 452 PPLCELEIDGFS 463 (596)
Q Consensus 452 ~~L~~L~l~~c~ 463 (596)
++|++|++++|+
T Consensus 311 ~~L~~L~L~~n~ 322 (347)
T 4fmz_A 311 TNLTTLFLSQNH 322 (347)
T ss_dssp TTCSEEECCSSS
T ss_pred ccCCEEEccCCc
Confidence 888888888876
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=5.5e-22 Score=202.50 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=76.8
Q ss_pred CceeEEEEecccccccccccccccCccc-ccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccC-Cccc
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPND-IAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLF-PDIG 211 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i~ 211 (596)
.+++.+.+..+... .+|.. +..+++|++|++++|.++.++. .++.+++|++|++++| .+..+| ..++
T Consensus 45 ~~l~~l~l~~~~l~---------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 114 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR---------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQ 114 (390)
T ss_dssp CCCSEEEEESCEES---------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCceEEEecCCchh---------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhc
Confidence 34555555554433 45655 5778888888888888887754 7788888888888888 565554 4478
Q ss_pred CCCccceeecCCCCcccccccc-ccCCcccCCCCcEEecc
Q 007616 212 NLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGK 250 (596)
Q Consensus 212 ~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~ 250 (596)
++++|++|++++|. +..+|.+ ++++++|++|++.++..
T Consensus 115 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 115 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCcc
Confidence 88888888888887 7788877 47888888888765543
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=5.7e-22 Score=202.41 Aligned_cols=299 Identities=13% Similarity=0.108 Sum_probs=217.1
Q ss_pred cccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCccc
Q 007616 164 AELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL 240 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L 240 (596)
..+.++++|+++++.++.+|.. +..+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|+. ++++++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCC
Confidence 3578999999999999999876 588999999999999 6776664 79999999999999999 7776554 8999999
Q ss_pred CCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCcc
Q 007616 241 RTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLK 320 (596)
Q Consensus 241 ~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 320 (596)
++|++.++.... ++. ..+..+++|+.|+++.+.. ....+..+..+++|+
T Consensus 120 ~~L~L~~n~l~~------l~~------------------------~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 120 TVLVLERNDLSS------LPR------------------------GIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQ 168 (390)
T ss_dssp CEEECCSSCCCC------CCT------------------------TTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCC
T ss_pred CEEECCCCccCc------CCH------------------------HHhcCCCCCcEEECCCCcc-CccChhhccCCCCCC
Confidence 999875543321 110 1134566777777776653 223334566778899
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCccee
Q 007616 321 ELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETL 400 (596)
Q Consensus 321 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L 400 (596)
.|++++|....++. . .+++|+.|++++|.. + .+...++|+.|++++|. +..++.. .+++|+.|
T Consensus 169 ~L~l~~n~l~~~~~--~--~l~~L~~L~l~~n~l-~---~~~~~~~L~~L~l~~n~-l~~~~~~--------~~~~L~~L 231 (390)
T 3o6n_A 169 NLQLSSNRLTHVDL--S--LIPSLFHANVSYNLL-S---TLAIPIAVEELDASHNS-INVVRGP--------VNVELTIL 231 (390)
T ss_dssp EEECCSSCCSBCCG--G--GCTTCSEEECCSSCC-S---EEECCSSCSEEECCSSC-CCEEECC--------CCSSCCEE
T ss_pred EEECCCCcCCcccc--c--cccccceeecccccc-c---ccCCCCcceEEECCCCe-eeecccc--------ccccccEE
Confidence 99999888766542 2 678899999988762 2 23344688999998865 4444332 26788888
Q ss_pred ecccCccccccceeEEecCCCCCCCCC--CCCCCCCEEEEeeccCh---hccCCCCCCcceEEecCCcccceeeEecccc
Q 007616 401 CFEDMQEWEERIGLSIVRCPKLKGRLP--QRFSSLERIVITSCEQL---LVSYTALPPLCELEIDGFSELFLILQIQGWR 475 (596)
Q Consensus 401 ~l~~~~~l~~~~~l~l~~c~~L~~~~p--~~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~ 475 (596)
+++++ ++++ .+ ..+++|++|++++|.-- +..+..+++|++|++++|... .
T Consensus 232 ~l~~n---------------~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~------- 286 (390)
T 3o6n_A 232 KLQHN---------------NLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--A------- 286 (390)
T ss_dssp ECCSS---------------CCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC--E-------
T ss_pred ECCCC---------------CCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc--c-------
Confidence 88874 2221 12 35789999999988632 566788999999999998621 1
Q ss_pred cccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCC
Q 007616 476 SRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPE 553 (596)
Q Consensus 476 ~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~ 553 (596)
+|... +++|+.| ++++|. ++.+|. .+..+++|++|++++| .++.++.
T Consensus 287 -------------~~~~~~~l~~L~~L-~L~~n~-----l~~~~~-----------~~~~l~~L~~L~L~~N-~i~~~~~ 335 (390)
T 3o6n_A 287 -------------LNLYGQPIPTLKVL-DLSHNH-----LLHVER-----------NQPQFDRLENLYLDHN-SIVTLKL 335 (390)
T ss_dssp -------------EECSSSCCTTCCEE-ECCSSC-----CCCCGG-----------GHHHHTTCSEEECCSS-CCCCCCC
T ss_pred -------------cCcccCCCCCCCEE-ECCCCc-----ceecCc-----------cccccCcCCEEECCCC-ccceeCc
Confidence 11111 7889999 999997 555555 4667899999999996 4777763
Q ss_pred CCCCCCccEEEEecCc
Q 007616 554 NVLPPSLVYLSIYLCP 569 (596)
Q Consensus 554 ~~~~~~L~~L~i~~C~ 569 (596)
..+++|++|++++++
T Consensus 336 -~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 336 -STHHTLKNLTLSHND 350 (390)
T ss_dssp -CTTCCCSEEECCSSC
T ss_pred -hhhccCCEEEcCCCC
Confidence 346899999999864
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=2.8e-22 Score=207.76 Aligned_cols=264 Identities=17% Similarity=0.101 Sum_probs=126.0
Q ss_pred cCcccccccCCCcEEeecCCCcc-ccccccccCCcC-------------cEEEccccccccccCCcccCCCccceeecCC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNL-------------QTLILEYCYRLKKLFPDIGNLVNLRHLKDSH 223 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L-------------~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 223 (596)
.+|++++++++|++|++++|.+. .+|.+++.+.+| ++|++++| .++.+|.. .++|++|++++
T Consensus 25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~---~~~L~~L~l~~ 100 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL---PPHLESLVASC 100 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC---CTTCSEEECCS
T ss_pred hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC---cCCCCEEEccC
Confidence 67777777778888887777776 677777777664 77777777 56666652 35677777777
Q ss_pred CCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccC
Q 007616 224 SNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGN 303 (596)
Q Consensus 224 ~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 303 (596)
|. ++.+|.. +++|++|++.++..... ..+. ..|+ .+.+.+..- .. ++ .+..+++|+.|+++++.
T Consensus 101 n~-l~~lp~~---~~~L~~L~l~~n~l~~l---~~~~--~~L~-~L~L~~n~l-~~----lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 101 NS-LTELPEL---PQSLKSLLVDNNNLKAL---SDLP--PLLE-YLGVSNNQL-EK----LP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp SC-CSSCCCC---CTTCCEEECCSSCCSCC---CSCC--TTCC-EEECCSSCC-SS----CC-CCTTCTTCCEEECCSSC
T ss_pred Cc-CCccccc---cCCCcEEECCCCccCcc---cCCC--CCCC-EEECcCCCC-CC----Cc-ccCCCCCCCEEECCCCc
Confidence 76 5556653 25566666544333221 1111 2333 444443211 11 11 25566666666666554
Q ss_pred CcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCc
Q 007616 304 KIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGL 383 (596)
Q Consensus 304 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 383 (596)
... .+. ...+|+.|++++|....+|. +. .+++|+.|++++|.. +.+|.. .++|+.|++++|. ++.++.
T Consensus 165 l~~--lp~---~~~~L~~L~L~~n~l~~l~~-~~--~l~~L~~L~l~~N~l-~~l~~~--~~~L~~L~l~~n~-l~~lp~ 232 (454)
T 1jl5_A 165 LKK--LPD---LPPSLEFIAAGNNQLEELPE-LQ--NLPFLTAIYADNNSL-KKLPDL--PLSLESIVAGNNI-LEELPE 232 (454)
T ss_dssp CSC--CCC---CCTTCCEEECCSSCCSSCCC-CT--TCTTCCEEECCSSCC-SSCCCC--CTTCCEEECCSSC-CSSCCC
T ss_pred Ccc--cCC---CcccccEEECcCCcCCcCcc-cc--CCCCCCEEECCCCcC-CcCCCC--cCcccEEECcCCc-CCcccc
Confidence 221 111 12356666666666555552 22 455666666665552 223322 1355556655542 223331
Q ss_pred cccCCCCCCCCCCcceeecccCc------cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceE
Q 007616 384 EFCGNYCSEPFPSLETLCFEDMQ------EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCEL 457 (596)
Q Consensus 384 ~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L 457 (596)
+. .+++|+.|++++.. ....+..+.+.++ ++. .+|..+++|+.|++++|.-- ..-...++|++|
T Consensus 233 -~~------~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N-~l~-~l~~~~~~L~~L~ls~N~l~-~l~~~~~~L~~L 302 (454)
T 1jl5_A 233 -LQ------NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN-YLT-DLPELPQSLTFLDVSENIFS-GLSELPPNLYYL 302 (454)
T ss_dssp -CT------TCTTCCEEECCSSCCSSCCSCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCS-EESCCCTTCCEE
T ss_pred -cC------CCCCCCEEECCCCcCCcccccccccCEEECCCC-ccc-ccCcccCcCCEEECcCCccC-cccCcCCcCCEE
Confidence 21 15555555555421 0011123333332 334 34555566666666655311 100112455555
Q ss_pred EecCCc
Q 007616 458 EIDGFS 463 (596)
Q Consensus 458 ~l~~c~ 463 (596)
++++|.
T Consensus 303 ~l~~N~ 308 (454)
T 1jl5_A 303 NASSNE 308 (454)
T ss_dssp ECCSSC
T ss_pred ECcCCc
Confidence 555553
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=2.8e-21 Score=200.19 Aligned_cols=258 Identities=16% Similarity=0.074 Sum_probs=160.2
Q ss_pred ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCcc-------------ceeecCCCCcccccc
Q 007616 165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNL-------------RHLKDSHSNLLEEMP 231 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L-------------~~L~l~~~~~l~~lp 231 (596)
+.++|++|++++|.+..+|++++++++|++|++++|...+.+|..++++.+| ++|++++|. ++.+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 4689999999999999999999999999999999996667999999999876 999999998 88888
Q ss_pred ccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCc-cccccccccccCCcchhhh
Q 007616 232 LRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK-KKLEALSPKWGNKIQTCVF 310 (596)
Q Consensus 232 ~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~ 310 (596)
.. .++|++|++.++...... . .+..++ .+.+.+..- .. +... ++|+.|+++.+.... .+
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp---~--~~~~L~-~L~l~~n~l-~~--------l~~~~~~L~~L~L~~n~l~~--lp 147 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELP---E--LPQSLK-SLLVDNNNL-KA--------LSDLPPLLEYLGVSNNQLEK--LP 147 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCC---C--CCTTCC-EEECCSSCC-SC--------CCSCCTTCCEEECCSSCCSS--CC
T ss_pred CC---cCCCCEEEccCCcCCccc---c--ccCCCc-EEECCCCcc-Cc--------ccCCCCCCCEEECcCCCCCC--Cc
Confidence 73 468888887665544311 1 124444 555554321 11 1122 689999998876432 33
Q ss_pred hccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCC
Q 007616 311 EMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC 390 (596)
Q Consensus 311 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 390 (596)
.+..+++|+.|++++|....+|... .+|++|++++|. ++.+|.++.+++|+.|++++|. +..++.
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~~-----~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N~-l~~l~~------- 212 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDLP-----PSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNNS-LKKLPD------- 212 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCCC-----TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSSCCC-------
T ss_pred -ccCCCCCCCEEECCCCcCcccCCCc-----ccccEEECcCCc-CCcCccccCCCCCCEEECCCCc-CCcCCC-------
Confidence 5888999999999999988887643 589999999997 4557889999999999999975 333332
Q ss_pred CCCCCCcceeecccCc--------cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCC
Q 007616 391 SEPFPSLETLCFEDMQ--------EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGF 462 (596)
Q Consensus 391 ~~~~~~L~~L~l~~~~--------~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c 462 (596)
..++|+.|+++++. .+..+..+.+.++ +++ .+|..+++|+.|++++|.-- .....+++|++|++++|
T Consensus 213 --~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 213 --LPLSLESIVAGNNILEELPELQNLPFLTTIYADNN-LLK-TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSEN 287 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCS-SCCSCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS
T ss_pred --CcCcccEEECcCCcCCcccccCCCCCCCEEECCCC-cCC-cccccccccCEEECCCCccc-ccCcccCcCCEEECcCC
Confidence 14688888887742 1222235555552 444 35666677777777776421 21123466777777777
Q ss_pred c
Q 007616 463 S 463 (596)
Q Consensus 463 ~ 463 (596)
.
T Consensus 288 ~ 288 (454)
T 1jl5_A 288 I 288 (454)
T ss_dssp C
T ss_pred c
Confidence 5
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=202.48 Aligned_cols=292 Identities=20% Similarity=0.194 Sum_probs=213.9
Q ss_pred ccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc-
Q 007616 132 RFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD- 209 (596)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~- 209 (596)
.++..++.+.+..+.+.. ..|..|..+++|++|+|++|.++.+ |..++++++|++|++++| .+..+|..
T Consensus 29 ~~~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 99 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKT--------LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGV 99 (477)
T ss_dssp CCCTTCSEEECCSSCCCE--------ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTS
T ss_pred CCCCCCcEEECCCCccce--------ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCccc
Confidence 345677888887776554 2356789999999999999999976 778999999999999999 78888865
Q ss_pred ccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616 210 IGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 289 (596)
Q Consensus 210 i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 289 (596)
++++++|++|++++|......|..+.++++|++|++.++..... ....+..+.+|+ .+.+.+..-. ......+.
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~-~L~l~~n~l~----~~~~~~l~ 173 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLE-QLTLEKCNLT----SIPTEALS 173 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCC-EEEEESCCCS----SCCHHHHT
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-ChhhccCCCCCC-EEECCCCcCc----ccChhHhc
Confidence 78999999999999994334456699999999999876654321 122344555666 6777654221 22234477
Q ss_pred CccccccccccccCCcchhhhhccCCCCCccEEEEeccC-CCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCc
Q 007616 290 GKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYG-GTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPS 366 (596)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~ 366 (596)
.+++|+.|+++.+.. .......+..+++|+.|++++|. ...+|.... ...+|+.|++++|. ++.+| .++.+++
T Consensus 174 ~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 174 HLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITHCN-LTAVPYLAVRHLVY 249 (477)
T ss_dssp TCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEESSC-CCSCCHHHHTTCTT
T ss_pred ccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCcccc--cCccccEEECcCCc-ccccCHHHhcCccc
Confidence 889999999988763 33334456778999999999876 344555444 44589999999987 45666 5788999
Q ss_pred cceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeecc-
Q 007616 367 LKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCE- 442 (596)
Q Consensus 367 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~- 442 (596)
|+.|++++|. +..++..... .+++|+.|++++. ++.+..| ..+++|+.|++++|.
T Consensus 250 L~~L~Ls~n~-l~~~~~~~~~-----~l~~L~~L~L~~n---------------~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 250 LRFLNLSYNP-ISTIEGSMLH-----ELLRLQEIQLVGG---------------QLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp CCEEECCSSC-CCEECTTSCT-----TCTTCCEEECCSS---------------CCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred cCeeECCCCc-CCccChhhcc-----ccccCCEEECCCC---------------ccceECHHHhcCcccCCEEECCCCcC
Confidence 9999999876 4455443222 2889999988873 2332223 357899999999985
Q ss_pred -Ch-hccCCCCCCcceEEecCCc
Q 007616 443 -QL-LVSYTALPPLCELEIDGFS 463 (596)
Q Consensus 443 -~l-~~~~~~l~~L~~L~l~~c~ 463 (596)
.+ +..+..+++|++|++++|+
T Consensus 309 ~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 309 TTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SCCCGGGBSCGGGCCEEECCSSC
T ss_pred ceeCHhHcCCCcccCEEEccCCC
Confidence 22 3456788999999999997
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.3e-21 Score=204.32 Aligned_cols=332 Identities=17% Similarity=0.124 Sum_probs=227.2
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccc-ccccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEE-MPLRI 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~-lp~~l 234 (596)
.+|. + .++|++|++++|.++.+ |..++.+++|++|++++|.....+ |..++++++|++|++++|. +.. .|..+
T Consensus 24 ~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 99 (455)
T 3v47_A 24 QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF 99 (455)
T ss_dssp SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT
T ss_pred cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc
Confidence 5666 3 27899999999999976 678999999999999999544456 4569999999999999999 555 47779
Q ss_pred cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHH--HhcCCccccccccccccCCcchhhhhc
Q 007616 235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKE--AQLNGKKKLEALSPKWGNKIQTCVFEM 312 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~ 312 (596)
+++++|++|++.++... +... ..+..+++|+.|+++.+..........
T Consensus 100 ~~l~~L~~L~L~~n~l~------------------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 149 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLD------------------------------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149 (455)
T ss_dssp TTCTTCCEEECTTSCCB------------------------------THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG
T ss_pred cCcccCCEEeCCCCCCC------------------------------ccccCcccccCcccCCEEECCCCccCccCcccc
Confidence 99999999986443221 1111 125667888888888776422222222
Q ss_pred cCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC---------CCCCCCccceeeccCccCceEeC
Q 007616 313 LKPHYGLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP---------SVGHLPSLKNLVIKGMAKVKSVG 382 (596)
Q Consensus 313 l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~---------~l~~l~~L~~L~L~~~~~l~~~~ 382 (596)
+..+++|+.|++++|..... +..+......+|+.|++++|.....-+ .+..+++|+.|++++|......+
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 66789999999999986654 333332123689999999887443222 13356899999999986544444
Q ss_pred ccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC-----CCCCCCCEEEEeeccCh---hccCCCCCCc
Q 007616 383 LEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-----QRFSSLERIVITSCEQL---LVSYTALPPL 454 (596)
Q Consensus 383 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p-----~~l~~L~~L~l~~c~~l---~~~~~~l~~L 454 (596)
..+.. ....++|+.|+++++....... . ...+.+..+ ...++|+.|++++|.-. +..+..+++|
T Consensus 230 ~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 301 (455)
T 3v47_A 230 KRFFD---AIAGTKIQSLILSNSYNMGSSF--G---HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301 (455)
T ss_dssp HHHHH---HTTTCCEEEEECTTCTTTSCCT--T---CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hhhhc---cccccceeeEeecccccccccc--c---hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC
Confidence 33221 0113788888888754332210 0 001111001 13478999999998632 5667889999
Q ss_pred ceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCC
Q 007616 455 CELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVG 532 (596)
Q Consensus 455 ~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~ 532 (596)
++|++++|... + ..|..+ +++|+.| ++++|. ++.++.. .+.
T Consensus 302 ~~L~Ls~n~l~-------~--------------~~~~~~~~l~~L~~L-~Ls~N~-----l~~~~~~----------~~~ 344 (455)
T 3v47_A 302 EQLTLAQNEIN-------K--------------IDDNAFWGLTHLLKL-NLSQNF-----LGSIDSR----------MFE 344 (455)
T ss_dssp CEEECTTSCCC-------E--------------ECTTTTTTCTTCCEE-ECCSSC-----CCEECGG----------GGT
T ss_pred CEEECCCCccc-------c--------------cChhHhcCcccCCEE-ECCCCc-----cCCcChh----------Hhc
Confidence 99999998722 1 012222 7899999 999997 4544332 577
Q ss_pred CCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecCc
Q 007616 533 NLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLCP 569 (596)
Q Consensus 533 ~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C~ 569 (596)
.+++|++|++++| .++.++...+ +++|++|++++|.
T Consensus 345 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 345 NLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcccCCEEECCCC-cccccChhhccccccccEEECCCCc
Confidence 8999999999996 5677644333 7899999999874
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.9e-21 Score=208.08 Aligned_cols=298 Identities=13% Similarity=0.120 Sum_probs=175.9
Q ss_pred ccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccC
Q 007616 165 ELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLR 241 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~ 241 (596)
.+.++++|+++++.+..+|+. ++.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|+. ++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence 355666666666666666543 456666677777666 4444443 56666667777776666 5555443 56666666
Q ss_pred CCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccE
Q 007616 242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKE 321 (596)
Q Consensus 242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 321 (596)
+|++.++.... ++ ...+..+++|+.|+++.+.. ....+..+..+++|+.
T Consensus 127 ~L~L~~n~l~~------l~------------------------~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 127 VLVLERNDLSS------LP------------------------RGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQN 175 (597)
T ss_dssp EEECCSSCCCC------CC------------------------TTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCE
T ss_pred EEEeeCCCCCC------CC------------------------HHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcE
Confidence 66654332211 00 00123444555555554432 2222334555667777
Q ss_pred EEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceee
Q 007616 322 LKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLC 401 (596)
Q Consensus 322 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 401 (596)
|++++|....++. . .+++|+.|++++|.. + .++..++|+.|++++|. +..++... +++|+.|+
T Consensus 176 L~L~~N~l~~~~~--~--~l~~L~~L~l~~n~l-~---~l~~~~~L~~L~ls~n~-l~~~~~~~--------~~~L~~L~ 238 (597)
T 3oja_B 176 LQLSSNRLTHVDL--S--LIPSLFHANVSYNLL-S---TLAIPIAVEELDASHNS-INVVRGPV--------NVELTILK 238 (597)
T ss_dssp EECTTSCCSBCCG--G--GCTTCSEEECCSSCC-S---EEECCTTCSEEECCSSC-CCEEECSC--------CSCCCEEE
T ss_pred EECcCCCCCCcCh--h--hhhhhhhhhcccCcc-c---cccCCchhheeeccCCc-cccccccc--------CCCCCEEE
Confidence 7777776655431 1 566777777777652 2 22334567777777764 33333221 45677777
Q ss_pred cccCccccccceeEEecCCCCCCCCC--CCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCCcccceeeEeccccc
Q 007616 402 FEDMQEWEERIGLSIVRCPKLKGRLP--QRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGFSELFLILQIQGWRS 476 (596)
Q Consensus 402 l~~~~~l~~~~~l~l~~c~~L~~~~p--~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~ 476 (596)
++++ .+++ .+ ..+++|+.|++++|.- .+..+..+++|++|++++|... .
T Consensus 239 L~~n---------------~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~-------- 292 (597)
T 3oja_B 239 LQHN---------------NLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--A-------- 292 (597)
T ss_dssp CCSS---------------CCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC--E--------
T ss_pred CCCC---------------CCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC--C--------
Confidence 7763 2221 11 2467888888887752 2456777888888888887621 1
Q ss_pred ccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCC
Q 007616 477 RAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPEN 554 (596)
Q Consensus 477 l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~ 554 (596)
+|... +++|+.| ++++|. +..+|. .+..+++|+.|++++|+ +..++.
T Consensus 293 ------------l~~~~~~l~~L~~L-~Ls~N~-----l~~i~~-----------~~~~l~~L~~L~L~~N~-l~~~~~- 341 (597)
T 3oja_B 293 ------------LNLYGQPIPTLKVL-DLSHNH-----LLHVER-----------NQPQFDRLENLYLDHNS-IVTLKL- 341 (597)
T ss_dssp ------------EECSSSCCTTCCEE-ECCSSC-----CCCCGG-----------GHHHHTTCSEEECCSSC-CCCCCC-
T ss_pred ------------CCcccccCCCCcEE-ECCCCC-----CCccCc-----------ccccCCCCCEEECCCCC-CCCcCh-
Confidence 12222 6788888 888887 445555 45677888888888854 666653
Q ss_pred CCCCCccEEEEecCc
Q 007616 555 VLPPSLVYLSIYLCP 569 (596)
Q Consensus 555 ~~~~~L~~L~i~~C~ 569 (596)
..+++|+.|+++++|
T Consensus 342 ~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 342 STHHTLKNLTLSHND 356 (597)
T ss_dssp CTTCCCSEEECCSSC
T ss_pred hhcCCCCEEEeeCCC
Confidence 346788888888764
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.4e-21 Score=206.65 Aligned_cols=265 Identities=16% Similarity=0.148 Sum_probs=182.4
Q ss_pred cCccc-ccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-
Q 007616 158 ELPND-IAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR- 233 (596)
Q Consensus 158 ~lp~~-~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~- 233 (596)
.+|+. ++.+++|++|++++|.++.+|+ .++.+++|++|++++| .+..+|+ .++++++|++|++++|. +..+|..
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 142 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI 142 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH
Confidence 56655 5889999999999999997764 8999999999999999 5666665 47999999999999998 8888887
Q ss_pred ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616 234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML 313 (596)
Q Consensus 234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 313 (596)
++++++|++|++.++..... ....+..++.|+ .+.+.+..-.. ..+..+++|+.|+++++.. ..+
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~-~L~L~~N~l~~-------~~~~~l~~L~~L~l~~n~l------~~l 207 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQ-NLQLSSNRLTH-------VDLSLIPSLFHANVSYNLL------STL 207 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCC-EEECTTSCCSB-------CCGGGCTTCSEEECCSSCC------SEE
T ss_pred hccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCc-EEECcCCCCCC-------cChhhhhhhhhhhcccCcc------ccc
Confidence 58999999999877655331 222344555555 66665532111 1245567788888876642 233
Q ss_pred CCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCC
Q 007616 314 KPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEP 393 (596)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 393 (596)
..+++|+.|++++|....++..+ .++|+.|++++|.. +..+.++.+++|+.|++++|......+..+..
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 276 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK------ 276 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTT------
T ss_pred cCCchhheeeccCCccccccccc----CCCCCEEECCCCCC-CCChhhccCCCCCEEECCCCccCCCCHHHhcC------
Confidence 45567888888888877666443 35788888888874 34567788888888888887655544544443
Q ss_pred CCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeecc--ChhccCCCCCCcceEEecCCc
Q 007616 394 FPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCE--QLLVSYTALPPLCELEIDGFS 463 (596)
Q Consensus 394 ~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~ 463 (596)
+++|+.|+++++. +..+. .....+++|+.|++++|. .++..+..+++|++|++++|.
T Consensus 277 l~~L~~L~Ls~N~-l~~l~------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 277 MQRLERLYISNNR-LVALN------------LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CSSCCEEECTTSC-CCEEE------------CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ccCCCEEECCCCC-CCCCC------------cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 7888888887731 11110 111236667777776664 233444456666666666665
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3e-21 Score=191.49 Aligned_cols=226 Identities=21% Similarity=0.312 Sum_probs=132.4
Q ss_pred cCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCc
Q 007616 166 LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK 245 (596)
Q Consensus 166 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~ 245 (596)
..++++|++++|.++.+|..++.+++|++|++++| .+..+|..++++++|++|++++|. +..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 46788888888888888888888888888888888 566888888888888888888887 6688888888888888887
Q ss_pred EEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEe
Q 007616 246 FVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVR 325 (596)
Q Consensus 246 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 325 (596)
.++...... ...+.. .. ....+..+++|+.|+++
T Consensus 158 ~~n~~~~~~-p~~~~~-------~~--------------------------------------~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 158 RACPELTEL-PEPLAS-------TD--------------------------------------ASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp EEETTCCCC-CSCSEE-------EC---------------------------------------CCCEEESTTCCEEEEE
T ss_pred CCCCCcccc-ChhHhh-------cc--------------------------------------chhhhccCCCCCEEECc
Confidence 765432210 000000 00 00012223455555555
Q ss_pred ccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccC
Q 007616 326 GYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDM 405 (596)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 405 (596)
+|....+|.++. .+++|++|++++|...+..+.++.+++|+.|++++|...+.++..+.. +++|+.|+++++
T Consensus 192 ~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------l~~L~~L~L~~n 263 (328)
T 4fcg_A 192 WTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG------RAPLKRLILKDC 263 (328)
T ss_dssp EECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------CCCCCEEECTTC
T ss_pred CCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcC------CCCCCEEECCCC
Confidence 555555555444 455555555555553322224555555555555555555544443332 555555555543
Q ss_pred ccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCC
Q 007616 406 QEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGF 462 (596)
Q Consensus 406 ~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c 462 (596)
.... .+| ..+++|+.|++++|.. ++..+..+++|+.+++..+
T Consensus 264 ~~~~---------------~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 264 SNLL---------------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCC---------------BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred Cchh---------------hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 3222 222 1355566666666553 3455666677777666543
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=7.7e-21 Score=203.63 Aligned_cols=358 Identities=19% Similarity=0.160 Sum_probs=237.0
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccC--CcccC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLF--PDIGN 212 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~ 212 (596)
.+++.+.+..+.+.. ..|..|+.+++|++|++++|.++.+|.. .+++|++|++++| .+..+| ..+++
T Consensus 76 ~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~ 144 (562)
T 3a79_B 76 SELRVLRLSHNRIRS--------LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGN 144 (562)
T ss_dssp TTCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGG
T ss_pred CCccEEECCCCCCCc--------CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcc
Confidence 456777776665553 3467799999999999999999999987 8999999999999 676654 68999
Q ss_pred CCccceeecCCCCccccccccccCCccc--CCCCcEEecc--CC--CCCchhcc-----------------------chh
Q 007616 213 LVNLRHLKDSHSNLLEEMPLRIGKLTSL--RTLAKFVVGK--GN--CSGLKELR-----------------------SLM 263 (596)
Q Consensus 213 L~~L~~L~l~~~~~l~~lp~~l~~l~~L--~~L~~~~~~~--~~--~~~l~~l~-----------------------~L~ 263 (596)
+++|++|++++|. +.. ..+..+++| ++|++..+.. .. ...+..+. .+.
T Consensus 145 l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~ 221 (562)
T 3a79_B 145 LTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221 (562)
T ss_dssp CTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEE
T ss_pred cCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccc
Confidence 9999999999998 544 235556666 8888877655 21 11122111 233
Q ss_pred hccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcch---hhhhccCCCCCccEEEEeccCCC-CCCCCCCC-
Q 007616 264 HLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT---CVFEMLKPHYGLKELKVRGYGGT-KFPAWLGQ- 338 (596)
Q Consensus 264 ~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~- 338 (596)
.|+ .+.+................+.++++|+.+++..+..... ..+..+ ..++|+.|++++|... .+|.++..
T Consensus 222 ~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~ 299 (562)
T 3a79_B 222 HLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTY 299 (562)
T ss_dssp EEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCC
T ss_pred eEE-EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhc
Confidence 333 3444331100011122333466777777777765432111 111111 2347888888888754 56665411
Q ss_pred --CCC--------------------------CCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCC
Q 007616 339 --SSF--------------------------ENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC 390 (596)
Q Consensus 339 --~~~--------------------------~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 390 (596)
..+ .+|+.|++++|.. ..++..+.+++|++|++++|...+.++..+..
T Consensus 300 ~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--- 375 (562)
T 3a79_B 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST--- 375 (562)
T ss_dssp CSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS---
T ss_pred ccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc-ccccCccCCCCceEEECCCCccccchhhhhcc---
Confidence 022 2366666666653 22223368899999999998644434443333
Q ss_pred CCCCCCcceeecccCccccccceeEEecCCCCCC--CCC---CCCCCCCEEEEeeccC---hhc-cCCCCCCcceEEecC
Q 007616 391 SEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKG--RLP---QRFSSLERIVITSCEQ---LLV-SYTALPPLCELEIDG 461 (596)
Q Consensus 391 ~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~--~~p---~~l~~L~~L~l~~c~~---l~~-~~~~l~~L~~L~l~~ 461 (596)
+++|+.|++++. ++++ .+| ..+++|+.|++++|.- ++. .+..+++|++|++++
T Consensus 376 ---l~~L~~L~L~~N---------------~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 376 ---LKRLQTLILQRN---------------GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp ---CSSCCEEECCSS---------------CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred ---cCCCCEEECCCC---------------CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 899999999873 2231 111 3689999999999873 332 467789999999999
Q ss_pred CcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeee
Q 007616 462 FSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLE 541 (596)
Q Consensus 462 c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~ 541 (596)
|... + .+|..+.++|+.| ++++|. ++.+|. .+..+++|++|+
T Consensus 438 n~l~-------~--------------~~~~~l~~~L~~L-~L~~N~-----l~~ip~-----------~~~~l~~L~~L~ 479 (562)
T 3a79_B 438 NMLT-------G--------------SVFRCLPPKVKVL-DLHNNR-----IMSIPK-----------DVTHLQALQELN 479 (562)
T ss_dssp SCCC-------G--------------GGGSSCCTTCSEE-ECCSSC-----CCCCCT-----------TTTSSCCCSEEE
T ss_pred CCCC-------c--------------chhhhhcCcCCEE-ECCCCc-----CcccCh-----------hhcCCCCCCEEE
Confidence 8721 1 1222223689999 999996 667766 466899999999
Q ss_pred cCCCCCCccCCCCC--CCCCccEEEEecCc
Q 007616 542 LPRCPVLRSFPENV--LPPSLVYLSIYLCP 569 (596)
Q Consensus 542 l~~c~~l~~lp~~~--~~~~L~~L~i~~C~ 569 (596)
+++ ++++.+|... .+++|+.|+++++|
T Consensus 480 L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 480 VAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 999 4688999853 37899999999865
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.6e-21 Score=189.05 Aligned_cols=198 Identities=21% Similarity=0.299 Sum_probs=138.2
Q ss_pred CCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCC
Q 007616 134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNL 213 (596)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 213 (596)
..+++.+.+..+.+. .+|..++++++|++|++++|.++.+|..++.+++|++|++++| .+..+|..++++
T Consensus 80 ~~~l~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---------QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS---------SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGC
T ss_pred ccceeEEEccCCCch---------hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcC
Confidence 356778888776554 6888999999999999999999999999999999999999999 777999999999
Q ss_pred CccceeecCCCCccccccccccC---------CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHH
Q 007616 214 VNLRHLKDSHSNLLEEMPLRIGK---------LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAK 284 (596)
Q Consensus 214 ~~L~~L~l~~~~~l~~lp~~l~~---------l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~ 284 (596)
++|++|++++|...+.+|..++. +++|++|++.++...
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------------- 196 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------------------------------- 196 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---------------------------------
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---------------------------------
Confidence 99999999998878899987765 555555555444321
Q ss_pred HHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCC
Q 007616 285 EAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGH 363 (596)
Q Consensus 285 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~ 363 (596)
..+..+..+++|+.|++++|....+|..+. .+++|++|++++|...+.+| .++.
T Consensus 197 -----------------------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 197 -----------------------SLPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp -----------------------CCCGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred -----------------------cchHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcC
Confidence 111223334455556666655555555444 45566666666665555555 3555
Q ss_pred CCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccC
Q 007616 364 LPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDM 405 (596)
Q Consensus 364 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 405 (596)
+++|+.|++++|...+.++..+.. +++|+.|+++++
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~------l~~L~~L~L~~n 287 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHR------LTQLEKLDLRGC 287 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGG------CTTCCEEECTTC
T ss_pred CCCCCEEECCCCCchhhcchhhhc------CCCCCEEeCCCC
Confidence 666666666666555555544433 556665555553
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.5e-21 Score=192.55 Aligned_cols=261 Identities=14% Similarity=0.097 Sum_probs=183.5
Q ss_pred ccCCCCccccC--CceeEEEEecccccccccccccccCcccccccCCCcEEeecC-CCcc-ccccccccCCcCcEEEccc
Q 007616 124 TWDGNNERRFS--RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSH-TAIE-VLSESVSTLYNLQTLILEY 199 (596)
Q Consensus 124 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~ 199 (596)
.|.|+.+.... .+++.+.+..+...+.. .+|..++.+++|++|++++ |.+. .+|..++.+++|++|++++
T Consensus 37 ~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~------~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~ 110 (313)
T 1ogq_A 37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPY------PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110 (313)
T ss_dssp CSTTEEECCSSSCCCEEEEEEECCCCSSCE------ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE
T ss_pred CCcceEeCCCCCCceEEEEECCCCCccCCc------ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC
Confidence 37777665443 67888888877654311 4788999999999999995 8887 7899999999999999999
Q ss_pred cccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchh-hccceEEEcCcCCCC
Q 007616 200 CYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLM-HLQEKLTISGLENVN 278 (596)
Q Consensus 200 ~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~-~L~~~l~i~~~~~~~ 278 (596)
|.....+|..++++++|++|++++|...+.+|..++++++|++|++.++.... .....+..+. .|+ .+.+.+..
T Consensus 111 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~-~L~L~~N~--- 185 (313)
T 1ogq_A 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFT-SMTISRNR--- 185 (313)
T ss_dssp ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCC-EEECCSSE---
T ss_pred CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-cCCHHHhhhhhcCc-EEECcCCe---
Confidence 94445889999999999999999999444788899999999999987665421 1222333343 444 45554321
Q ss_pred CHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCC
Q 007616 279 DAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTL 358 (596)
Q Consensus 279 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l 358 (596)
.....+..+..++ |+.|+++.+. .....+..+..+++|+.|++++|.....+..+. .+++|++|++++|...+.+
T Consensus 186 -l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 186 -LTGKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp -EEEECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEECCBGGGCC--CCTTCCEEECCSSCCEECC
T ss_pred -eeccCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCceeeecCccc--ccCCCCEEECcCCcccCcC
Confidence 1111222344454 8888887765 333455666777888888888887665444444 5778888888888766566
Q ss_pred C-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCcc
Q 007616 359 P-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQE 407 (596)
Q Consensus 359 ~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 407 (596)
| .++.+++|+.|++++|...+.++.. ..+++|+.+++.+.+.
T Consensus 261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSSSE
T ss_pred ChHHhcCcCCCEEECcCCcccccCCCC-------ccccccChHHhcCCCC
Confidence 6 5777888888888887655555543 1267777777777543
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.4e-19 Score=197.17 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=104.1
Q ss_pred cccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc
Q 007616 156 LHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR 233 (596)
Q Consensus 156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~ 233 (596)
+.++|..+. .++++|||++|.|+.+| .+|.++++|++|+|++| .+..+|+ .|+++++|++|++++|. ++.+|.+
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~ 118 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG 118 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGG
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHH
Confidence 447777653 47999999999999987 47999999999999999 7888875 58999999999999998 8888876
Q ss_pred -ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCC
Q 007616 234 -IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNK 304 (596)
Q Consensus 234 -l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 304 (596)
++++++|++|++.++...... -..+.+++.|+ .+.+.+..-.. ...+..+..+++|+.|+++.+..
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~-~L~Ls~N~l~~---~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLK-ELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCST-TCCCTTCTTCC-EEECCSSCCCC---CCCCGGGGGCTTCCEEECCSSCC
T ss_pred HhcCCCCCCEEECCCCcCCCCC-hhhhhcCcccC-eeccccCcccc---CCCchhhccchhhhhhcccCccc
Confidence 899999999998766554321 11244555565 66665432111 01123466788899999887753
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=2.3e-19 Score=178.68 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=116.1
Q ss_pred cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLRIG 235 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~l~ 235 (596)
.+|..+. ++|++|++++|.++.++. .++.+++|++|++++| .+..+ |..++++++|++|++++|. ++.+|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~ 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC
T ss_pred ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc
Confidence 4565543 578888888888887765 6788888888888888 55555 6778888888888888888 777877654
Q ss_pred CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcc-hhhhhccC
Q 007616 236 KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQ-TCVFEMLK 314 (596)
Q Consensus 236 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~ 314 (596)
++|++|++.++... ......+.++++|+.|+++.+.... ......+.
T Consensus 121 --~~L~~L~l~~n~l~------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 168 (330)
T 1xku_A 121 --KTLQELRVHENEIT------------------------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168 (330)
T ss_dssp --TTCCEEECCSSCCC------------------------------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred --ccccEEECCCCccc------------------------------ccCHhHhcCCccccEEECCCCcCCccCcChhhcc
Confidence 56777665332211 0111224556667777776654321 12234455
Q ss_pred CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616 315 PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 376 (596)
.+++|+.|++++|....+|..+ +++|++|++++|...+..+ .++.+++|+.|++++|.
T Consensus 169 ~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp GCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred CCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 5677777777777776666543 2567777777776333323 46666777777776654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=8.2e-19 Score=174.71 Aligned_cols=268 Identities=15% Similarity=0.130 Sum_probs=130.7
Q ss_pred CCCcEEeecCCCccccc-cccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616 167 KHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 244 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 244 (596)
++|++|++++|.++.++ ..++.+++|++|++++| .+..+ |..++++++|++|++++|. +..+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEE
Confidence 34555555555555442 24555555555555555 33333 3445555555555555554 445554433 4455554
Q ss_pred cEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEE
Q 007616 245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV 324 (596)
Q Consensus 245 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 324 (596)
+.++..... ....+..+++|+ .+.+.+..-.. .......+..+ +|+.|+++.+.... .+..+ .++|+.|++
T Consensus 130 l~~n~i~~~-~~~~~~~l~~L~-~L~l~~n~l~~--~~~~~~~~~~l-~L~~L~l~~n~l~~--l~~~~--~~~L~~L~l 200 (332)
T 2ft3_A 130 IHDNRIRKV-PKGVFSGLRNMN-CIEMGGNPLEN--SGFEPGAFDGL-KLNYLRISEAKLTG--IPKDL--PETLNELHL 200 (332)
T ss_dssp CCSSCCCCC-CSGGGSSCSSCC-EEECCSCCCBG--GGSCTTSSCSC-CCSCCBCCSSBCSS--CCSSS--CSSCSCCBC
T ss_pred CCCCccCcc-CHhHhCCCccCC-EEECCCCcccc--CCCCcccccCC-ccCEEECcCCCCCc--cCccc--cCCCCEEEC
Confidence 433332211 001122222222 23322211000 00111123334 66666666654221 11111 257777777
Q ss_pred eccCCCCCC-CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeec
Q 007616 325 RGYGGTKFP-AWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCF 402 (596)
Q Consensus 325 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 402 (596)
++|....++ ..+. .+++|+.|++++|...+..+ .++.+++|+.|++++|. +..++..+.. +++|+.|++
T Consensus 201 ~~n~i~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~------l~~L~~L~l 271 (332)
T 2ft3_A 201 DHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPD------LKLLQVVYL 271 (332)
T ss_dssp CSSCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGG------CTTCCEEEC
T ss_pred CCCcCCccCHHHhc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhc------CccCCEEEC
Confidence 777766654 3344 56777777777776444333 46677778888887763 4455554433 677777777
Q ss_pred ccCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccCh-----hccCCCCCCcceEEecCCc
Q 007616 403 EDMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQL-----LVSYTALPPLCELEIDGFS 463 (596)
Q Consensus 403 ~~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~l-----~~~~~~l~~L~~L~l~~c~ 463 (596)
++.. +..+. ...+.+..+ ..+++|+.|++.+++.. +..+..+++|+.+++++|.
T Consensus 272 ~~N~-l~~~~------~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNN-ITKVG------VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSC-CCBCC------TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCC-CCccC------hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7631 22111 000000000 12567788888877632 4556678888888887764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=8.9e-19 Score=174.37 Aligned_cols=268 Identities=16% Similarity=0.151 Sum_probs=168.9
Q ss_pred cCCceeEEEEecccccccccccccccCc-ccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELP-NDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDI 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i 210 (596)
.+..++.+.+..+.+. .+| ..|+.+++|++|++++|.++.+ |..++.+++|++|++++| .++.+|..+
T Consensus 50 ~~~~l~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~ 119 (330)
T 1xku_A 50 LPPDTALLDLQNNKIT---------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM 119 (330)
T ss_dssp CCTTCCEEECCSSCCC---------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC
T ss_pred CCCCCeEEECCCCcCC---------EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhh
Confidence 3456777777666554 344 4689999999999999999977 788999999999999999 788999877
Q ss_pred cCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCC-CCchhccchhhccceEEEcCcCCCCCHhhHHHHhc
Q 007616 211 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNC-SGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL 288 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~-~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l 288 (596)
. ++|++|++++|. +..++.. ++++++|++|++.++..... ..... +
T Consensus 120 ~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------------------~ 167 (330)
T 1xku_A 120 P--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----------------------------F 167 (330)
T ss_dssp C--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-----------------------------G
T ss_pred c--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhh-----------------------------c
Confidence 6 799999999998 7776654 88999999998765543211 11112 3
Q ss_pred CCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCc
Q 007616 289 NGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPS 366 (596)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~ 366 (596)
..+++|+.|+++.+.... .+..+ .++|+.|++++|....+ |..+. .+++|+.|++++|...+..+ .++.+++
T Consensus 168 ~~l~~L~~L~l~~n~l~~--l~~~~--~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp GGCTTCCEEECCSSCCCS--CCSSC--CTTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred cCCCCcCEEECCCCcccc--CCccc--cccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCceeChhhccCCCC
Confidence 344455555555443211 11111 25677777777765544 33444 56677777777776433333 4666777
Q ss_pred cceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccCh-
Q 007616 367 LKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQL- 444 (596)
Q Consensus 367 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~l- 444 (596)
|+.|++++|. +..++..+.. +++|+.|++++.. ++.+. ...+.+..+ ...+.|+.|++.+++-.
T Consensus 242 L~~L~L~~N~-l~~lp~~l~~------l~~L~~L~l~~N~-i~~~~------~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 242 LRELHLNNNK-LVKVPGGLAD------HKYIQVVYLHNNN-ISAIG------SNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCEEECCSSC-CSSCCTTTTT------CSSCCEEECCSSC-CCCCC------TTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCEEECCCCc-CccCChhhcc------CCCcCEEECCCCc-CCccC------hhhcCCcccccccccccceEeecCcccc
Confidence 7777777763 4444443322 6677777776531 11110 000000000 12467788888877632
Q ss_pred ----hccCCCCCCcceEEecCC
Q 007616 445 ----LVSYTALPPLCELEIDGF 462 (596)
Q Consensus 445 ----~~~~~~l~~L~~L~l~~c 462 (596)
+..+..+++++.+++++|
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC---
T ss_pred cccCccccccccceeEEEeccc
Confidence 456777888888888876
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1.5e-20 Score=185.35 Aligned_cols=243 Identities=14% Similarity=0.125 Sum_probs=166.3
Q ss_pred CCCcEEeecCCCcc---ccccccccCCcCcEEEccc-cccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616 167 KHLRYLDFSHTAIE---VLSESVSTLYNLQTLILEY-CYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242 (596)
Q Consensus 167 ~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~-~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 242 (596)
.+++.|+++++.++ .+|..++.+++|++|++++ |.....+|..++++++|++|++++|...+.+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 6555689999999999999999999944588999999999999
Q ss_pred CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC-CccE
Q 007616 243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY-GLKE 321 (596)
Q Consensus 243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~ 321 (596)
|++.++.... ... ..+..+++|+.|+++.+. .....+..+..++ +|+.
T Consensus 130 L~Ls~N~l~~-~~p-----------------------------~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 130 LDFSYNALSG-TLP-----------------------------PSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp EECCSSEEES-CCC-----------------------------GGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCE
T ss_pred EeCCCCccCC-cCC-----------------------------hHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcE
Confidence 9876554321 111 124445566666666554 2333444555555 7777
Q ss_pred EEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcce
Q 007616 322 LKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLET 399 (596)
Q Consensus 322 L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~ 399 (596)
|++++|... .+|..+. .++ |+.|++++|...+..+ .++.+++|+.|++++|.....++. + ..+++|++
T Consensus 179 L~L~~N~l~~~~~~~~~--~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~------~~l~~L~~ 248 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFA--NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V------GLSKNLNG 248 (313)
T ss_dssp EECCSSEEEEECCGGGG--GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C------CCCTTCCE
T ss_pred EECcCCeeeccCChHHh--CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c------cccCCCCE
Confidence 777777654 4555554 344 7788887776544444 467777888888877653322221 2 22677777
Q ss_pred eecccCccccccceeEEecCCCCCCCCCC---CCCCCCEEEEeeccCh--hccCCCCCCcceEEecCCccc
Q 007616 400 LCFEDMQEWEERIGLSIVRCPKLKGRLPQ---RFSSLERIVITSCEQL--LVSYTALPPLCELEIDGFSEL 465 (596)
Q Consensus 400 L~l~~~~~l~~~~~l~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~l--~~~~~~l~~L~~L~l~~c~~l 465 (596)
|+++++ ++.+.+|. .+++|+.|++++|.-- ......+++|+.|++++|+.+
T Consensus 249 L~Ls~N---------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 249 LDLRNN---------------RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EECCSS---------------CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred EECcCC---------------cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 777763 33334442 4677888888877521 122356788888888888744
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=3.6e-18 Score=182.40 Aligned_cols=219 Identities=19% Similarity=0.098 Sum_probs=117.9
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l 237 (596)
.+|..+. ++|++|++++|.++.+|. .+++|++|++++| .++.+|. .+++|++|++++|. +..+|. .+
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l 120 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNP-LTHLPA---LP 120 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CCCCCC---CC
T ss_pred ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCc-CCCCCC---CC
Confidence 4565554 678888888887777776 4677888888887 6777776 56778888888777 666766 44
Q ss_pred cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616 238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY 317 (596)
Q Consensus 238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (596)
++|++|++.++.... ++ ..+++|+.|+++.+..... + ..++
T Consensus 121 ~~L~~L~L~~N~l~~------lp----------------------------~~l~~L~~L~Ls~N~l~~l--~---~~~~ 161 (622)
T 3g06_A 121 SGLCKLWIFGNQLTS------LP----------------------------VLPPGLQELSVSDNQLASL--P---ALPS 161 (622)
T ss_dssp TTCCEEECCSSCCSC------CC----------------------------CCCTTCCEEECCSSCCSCC--C---CCCT
T ss_pred CCcCEEECCCCCCCc------CC----------------------------CCCCCCCEEECcCCcCCCc--C---CccC
Confidence 566666543322110 00 0113455555554432110 0 1234
Q ss_pred CccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCc
Q 007616 318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSL 397 (596)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 397 (596)
+|+.|++++|....+|. .+++|+.|++++|. ++.+|. .+++|+.|++++|. +..++. .+++|
T Consensus 162 ~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~-l~~l~~--~~~~L~~L~L~~N~-l~~l~~---------~~~~L 223 (622)
T 3g06_A 162 ELCKLWAYNNQLTSLPM-----LPSGLQELSVSDNQ-LASLPT--LPSELYKLWAYNNR-LTSLPA---------LPSGL 223 (622)
T ss_dssp TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCC---------CCTTC
T ss_pred CCCEEECCCCCCCCCcc-----cCCCCcEEECCCCC-CCCCCC--ccchhhEEECcCCc-ccccCC---------CCCCC
Confidence 56666666666655551 34566666666655 333432 23566666666543 222221 13555
Q ss_pred ceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCCc
Q 007616 398 ETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFS 463 (596)
Q Consensus 398 ~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c~ 463 (596)
+.|++++ ++++ .+|..+++|+.|++++|. +......+++|+.|++++|.
T Consensus 224 ~~L~Ls~---------------N~L~-~lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 224 KELIVSG---------------NRLT-SLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQ 272 (622)
T ss_dssp CEEECCS---------------SCCS-CCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CEEEccC---------------CccC-cCCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCC
Confidence 5555554 2333 244455566666665553 21111234555555555554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.4e-18 Score=173.12 Aligned_cols=287 Identities=11% Similarity=0.083 Sum_probs=164.2
Q ss_pred CCCcEEeecCCCccccccccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCccccc-cccccCCcccCCCC
Q 007616 167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLA 244 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~ 244 (596)
.++++++++++.++.+|..+. ++|++|++++| .+..+| ..++++++|++|++++|. +..+ |..++++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEE
Confidence 479999999999999998774 79999999999 677665 579999999999999999 6665 66799999999999
Q ss_pred cEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEE
Q 007616 245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV 324 (596)
Q Consensus 245 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 324 (596)
+.++....... .+ .++|+.|+++.+.. .......+..+++|+.|++
T Consensus 109 L~~n~l~~l~~--~~-------------------------------~~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 109 ISKNHLVEIPP--NL-------------------------------PSSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp CCSSCCCSCCS--SC-------------------------------CTTCCEEECCSSCC-CCCCSGGGSSCSSCCEEEC
T ss_pred CCCCcCCccCc--cc-------------------------------cccCCEEECCCCcc-CccCHhHhCCCccCCEEEC
Confidence 76554332100 00 03444555544432 1111223444556666666
Q ss_pred eccCCC---CCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeC-ccccCCCCCCCCCCccee
Q 007616 325 RGYGGT---KFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVG-LEFCGNYCSEPFPSLETL 400 (596)
Q Consensus 325 ~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~~~~~L~~L 400 (596)
++|... ..+..+. .+ +|+.|++++|. ++.+|.. -.++|+.|++++|. ++.++ ..+. .+++|+.|
T Consensus 155 ~~n~l~~~~~~~~~~~--~l-~L~~L~l~~n~-l~~l~~~-~~~~L~~L~l~~n~-i~~~~~~~l~------~l~~L~~L 222 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFD--GL-KLNYLRISEAK-LTGIPKD-LPETLNELHLDHNK-IQAIELEDLL------RYSKLYRL 222 (332)
T ss_dssp CSCCCBGGGSCTTSSC--SC-CCSCCBCCSSB-CSSCCSS-SCSSCSCCBCCSSC-CCCCCTTSST------TCTTCSCC
T ss_pred CCCccccCCCCccccc--CC-ccCEEECcCCC-CCccCcc-ccCCCCEEECCCCc-CCccCHHHhc------CCCCCCEE
Confidence 665543 2222232 23 56666666655 2333321 12566666666653 22222 2221 25566666
Q ss_pred ecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeecc--ChhccCCCCCCcceEEecCCcccceeeEecccc
Q 007616 401 CFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCE--QLLVSYTALPPLCELEIDGFSELFLILQIQGWR 475 (596)
Q Consensus 401 ~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~ 475 (596)
++++. ++.+..+ ..+++|+.|++++|. .++..+..+++|++|++++|... .+....
T Consensus 223 ~L~~N---------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~--~~~~~~-- 283 (332)
T 2ft3_A 223 GLGHN---------------QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT--KVGVND-- 283 (332)
T ss_dssp BCCSS---------------CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC--BCCTTS--
T ss_pred ECCCC---------------cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC--ccChhH--
Confidence 65552 2221111 245667777776664 33445666788888888887621 110000
Q ss_pred cccccCCcccccccccccchhhhccccccccccccccc-eecccCCCCCCCCCCCCCCCCCCCCeeecCCCC
Q 007616 476 SRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLL-VYIAEGGEFPQLESLSFVGNLTSLERLELPRCP 546 (596)
Q Consensus 476 ~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l-~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~ 546 (596)
|.. ..+....++|+.| ++.+++. . ..++.. .+..+++|+.|++++|.
T Consensus 284 -----~~~----~~~~~~~~~l~~L-~l~~N~~----~~~~~~~~----------~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 284 -----FCP----VGFGVKRAYYNGI-SLFNNPV----PYWEVQPA----------TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -----SSC----SSCCSSSCCBSEE-ECCSSSS----CGGGSCGG----------GGTTBCCSTTEEC----
T ss_pred -----ccc----cccccccccccce-EeecCcc----cccccCcc----------cccccchhhhhhccccc
Confidence 000 0000114667788 8888874 2 022221 46678889999998865
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=3e-19 Score=175.74 Aligned_cols=201 Identities=19% Similarity=0.109 Sum_probs=94.1
Q ss_pred CCCcEEeecCCCccccccc-cccCCcCcEEEcccccccccc---CCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616 167 KHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKL---FPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 242 (596)
++|++|++++|.++.+|.. ++.+++|++|++++| .+..+ |..+..+++|++|++++|. +..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence 4566666666666665543 456666666666666 33322 3445556666666666665 5556655666666666
Q ss_pred CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616 243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322 (596)
Q Consensus 243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 322 (596)
|++.++..........+..++.|+ .+.+.+... .......+..+++|+.|+++++.......+..+..+++|+.|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~-~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLI-YLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCC-EEECTTSCC----EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred EECCCCcccccccchhhhhccCCC-EEECCCCcC----CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 654433222211111122222222 222221110 000111234445555555555432221233444455555555
Q ss_pred EEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616 323 KVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 323 ~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 376 (596)
++++|....+ |.++. .+++|+.|++++|...+..+ .++.+++|+.|++++|.
T Consensus 181 ~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ECTTSCCCEECTTTTT--TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ECCCCCcCCcCHHHhc--CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 5555554443 23333 45555555555555322212 34455555555555553
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=8.7e-19 Score=176.15 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=49.4
Q ss_pred cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. ++|++|++++|.++.+|. .++.+++|++|++++| .+..+ |..++++++|++|++++|. ++.+|.. +
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 120 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF 120 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH
T ss_pred ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh
Confidence 4555443 366666777666666554 5666666777776666 44444 3446666666666666666 5555544 4
Q ss_pred cCCcccCCCC
Q 007616 235 GKLTSLRTLA 244 (596)
Q Consensus 235 ~~l~~L~~L~ 244 (596)
+++++|++|+
T Consensus 121 ~~l~~L~~L~ 130 (353)
T 2z80_A 121 KPLSSLTFLN 130 (353)
T ss_dssp TTCTTCSEEE
T ss_pred CCCccCCEEE
Confidence 5555555554
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2e-17 Score=176.59 Aligned_cols=257 Identities=22% Similarity=0.186 Sum_probs=172.5
Q ss_pred CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcE
Q 007616 167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 246 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~ 246 (596)
.++++|+++++.++.+|..+. ++|++|++++| .++.+|. .+++|++|++++|. ++.+|. .+++|++|++.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECc
Confidence 469999999999999998776 89999999999 7888987 67999999999998 888887 67888888765
Q ss_pred EeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEec
Q 007616 247 VVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRG 326 (596)
Q Consensus 247 ~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 326 (596)
++.... ++. .+++|+.|+++.+.... .+. .+++|+.|++++
T Consensus 110 ~N~l~~------l~~----------------------------~l~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~ 150 (622)
T 3g06_A 110 SNPLTH------LPA----------------------------LPSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSD 150 (622)
T ss_dssp SCCCCC------CCC----------------------------CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCS
T ss_pred CCcCCC------CCC----------------------------CCCCcCEEECCCCCCCc--CCC---CCCCCCEEECcC
Confidence 443221 110 22456666665553211 111 236788888888
Q ss_pred cCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc
Q 007616 327 YGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ 406 (596)
Q Consensus 327 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 406 (596)
|....+|. .+++|+.|++++|. ++.+| ..+++|+.|++++|. +..++. .+++|+.|++++
T Consensus 151 N~l~~l~~-----~~~~L~~L~L~~N~-l~~l~--~~~~~L~~L~Ls~N~-l~~l~~---------~~~~L~~L~L~~-- 210 (622)
T 3g06_A 151 NQLASLPA-----LPSELCKLWAYNNQ-LTSLP--MLPSGLQELSVSDNQ-LASLPT---------LPSELYKLWAYN-- 210 (622)
T ss_dssp SCCSCCCC-----CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC---------CCTTCCEEECCS--
T ss_pred CcCCCcCC-----ccCCCCEEECCCCC-CCCCc--ccCCCCcEEECCCCC-CCCCCC---------ccchhhEEECcC--
Confidence 87776664 34578888888776 44455 456788888887764 333332 146677777666
Q ss_pred cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCCcccceeeEecccccccccCCcccc
Q 007616 407 EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIR 486 (596)
Q Consensus 407 ~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~ 486 (596)
+.++ .+|..+++|+.|++++|. +......+++|++|++++|...
T Consensus 211 -------------N~l~-~l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N~L~--------------------- 254 (622)
T 3g06_A 211 -------------NRLT-SLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLT--------------------- 254 (622)
T ss_dssp -------------SCCS-SCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCS---------------------
T ss_pred -------------Cccc-ccCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCCCCC---------------------
Confidence 2334 456566778888887763 2222245677777777777511
Q ss_pred cccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCC
Q 007616 487 IPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPV 547 (596)
Q Consensus 487 l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~ 547 (596)
.+|. .+++|+.| ++++|. ++.+|. .+.++++|+.|++++|+-
T Consensus 255 -~lp~-~~~~L~~L-~Ls~N~-----L~~lp~-----------~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 255 -SLPM-LPSGLLSL-SVYRNQ-----LTRLPE-----------SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CCCC-CCTTCCEE-ECCSSC-----CCSCCG-----------GGGGSCTTCEEECCSCCC
T ss_pred -cCCc-ccccCcEE-eCCCCC-----CCcCCH-----------HHhhccccCEEEecCCCC
Confidence 1222 25677777 777776 445554 466777788888887653
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=174.11 Aligned_cols=197 Identities=16% Similarity=0.097 Sum_probs=109.5
Q ss_pred cCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccc-ccccCCcccCCC
Q 007616 166 LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTL 243 (596)
Q Consensus 166 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L 243 (596)
++...+.+.+++.++.+|..+. ++|++|++++| .++.+|. .++++++|++|++++|. +..++ ..++++++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEE
Confidence 3344456666677777766554 46777777777 5555554 56777777777777776 55543 346677777777
Q ss_pred CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616 244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK 323 (596)
Q Consensus 244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 323 (596)
++.++.... ++ ...+..+++|+.|+++.+..........+..+++|+.|+
T Consensus 106 ~Ls~n~l~~------~~------------------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 106 DLSYNYLSN------LS------------------------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp ECCSSCCSS------CC------------------------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred ECCCCcCCc------CC------------------------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 654332211 00 011344555666666555422111112355566777777
Q ss_pred EeccC-CCCCC-CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCccee
Q 007616 324 VRGYG-GTKFP-AWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETL 400 (596)
Q Consensus 324 l~~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L 400 (596)
+++|. ...++ ..+. .+++|++|++++|...+..+ .++.+++|+.|++++|. ++.++..+.+ .+++|+.|
T Consensus 156 l~~n~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~-----~~~~L~~L 227 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFA--GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVD-----VTSSVECL 227 (353)
T ss_dssp EEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHH-----HTTTEEEE
T ss_pred CCCCccccccCHHHcc--CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhh-----hcccccEE
Confidence 77763 44432 3333 56777777777776444433 56677777777777764 2333322211 15566666
Q ss_pred eccc
Q 007616 401 CFED 404 (596)
Q Consensus 401 ~l~~ 404 (596)
++++
T Consensus 228 ~L~~ 231 (353)
T 2z80_A 228 ELRD 231 (353)
T ss_dssp EEES
T ss_pred ECCC
Confidence 6655
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2e-17 Score=172.05 Aligned_cols=181 Identities=20% Similarity=0.213 Sum_probs=111.9
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. +++++|+|++|.++.+ |..++.+++|++|++++| .+..++ ..++++++|++|++++|. +..+|.. +
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 143 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF 143 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS
T ss_pred ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc-CCccChhhh
Confidence 6676554 6899999999999876 567899999999999999 566555 668899999999999998 7787766 7
Q ss_pred cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616 235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK 314 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (596)
+.+++|++|++.++.... ++ ...+..+++|+.|+++.+..........+.
T Consensus 144 ~~l~~L~~L~L~~N~l~~------~~------------------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIES------IP------------------------SYAFNRVPSLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp SSCTTCCEEECCSCCCCE------EC------------------------TTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred cccCCCCEEECCCCCcce------eC------------------------HhHHhcCCcccEEeCCCCCCccccChhhcc
Confidence 888888888865443211 10 011334445555555443322222222334
Q ss_pred CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCc
Q 007616 315 PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGM 375 (596)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~ 375 (596)
.+++|+.|++++|....+|.. . .+++|+.|++++|...+..+ .++.+++|+.|++++|
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDMPNL-T--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp TCTTCCEEECTTSCCSSCCCC-T--TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred CCCCCCEEECCCCcccccccc-c--ccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 455555555555555554431 2 34555555555555333222 3455555555555554
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2.6e-17 Score=170.46 Aligned_cols=182 Identities=18% Similarity=0.186 Sum_probs=116.7
Q ss_pred cCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. +++++|+|++|.++.++ ..+..+++|++|++++| .+..++ ..+.++++|++|++++|. ++.+|.+ +
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 132 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAF 132 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc-CCeeCHhHh
Confidence 6777654 68999999999998765 67889999999999999 666665 568889999999999998 7787764 8
Q ss_pred cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616 235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK 314 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (596)
..+++|++|++.++.... ++ ...+..+++|+.|+++.+..........+.
T Consensus 133 ~~l~~L~~L~L~~N~i~~------~~------------------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 182 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIES------IP------------------------SYAFNRIPSLRRLDLGELKRLSYISEGAFE 182 (440)
T ss_dssp CSCSSCCEEECCSCCCCE------EC------------------------TTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred hccccCceeeCCCCcccc------cC------------------------HHHhhhCcccCEeCCCCCCCcceeCcchhh
Confidence 888888888765443211 10 011344555555555543322222223344
Q ss_pred CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616 315 PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 376 (596)
.+++|+.|++++|....+|.. . .+++|+.|++++|...+..+ .+..+++|+.|++++|.
T Consensus 183 ~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREIPNL-T--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp TCSSCCEEECTTSCCSSCCCC-T--TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred cccccCeecCCCCcCcccccc-C--CCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 556666666666666555532 2 45666666666665333222 45566666666666643
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1e-20 Score=197.83 Aligned_cols=377 Identities=17% Similarity=0.120 Sum_probs=222.3
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccccc-cCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRLKK-LFP 208 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~-lp~ 208 (596)
.+++.+.+..+..... .....+..+++|++|++++|.++ .++..+..+++|++|++++| .+.. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~-------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA-------RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVH 74 (461)
T ss_dssp EEEEEEEEESCCCCHH-------HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHH
T ss_pred ccceehhhhhcccCch-------hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHH
Confidence 4566677665544321 12233678899999999999988 45777888999999999998 4433 222
Q ss_pred cc-cCCC----ccceeecCCCCccc-----cccccccCCcccCCCCcEEeccCCCCCchhcc-----chhhccceEEEcC
Q 007616 209 DI-GNLV----NLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFVVGKGNCSGLKELR-----SLMHLQEKLTISG 273 (596)
Q Consensus 209 ~i-~~L~----~L~~L~l~~~~~l~-----~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~-----~L~~L~~~l~i~~ 273 (596)
.+ ..+. +|++|++++|. ++ .+|..+.++++|++|++.++.... .....+. ....|+ .+.+.+
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~-~L~L~~ 151 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGD-AGLQLLCEGLLDPQCRLE-KLQLEY 151 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCC-EEECTT
T ss_pred HHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCch-HHHHHHHHHHhcCCCcce-EEECCC
Confidence 22 2344 79999999998 55 467778899999999876554321 1111111 123455 666665
Q ss_pred cCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC-----CCCCccEEEEeccCCCC-----CCCCCCCCCCCC
Q 007616 274 LENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK-----PHYGLKELKVRGYGGTK-----FPAWLGQSSFEN 343 (596)
Q Consensus 274 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~ 343 (596)
+.-.......+...+..+++|+.|+++++.. .......+. ..++|+.|++++|.... ++..+. .+++
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~ 228 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA--SKAS 228 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH--HCTT
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCCc-chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH--hCCC
Confidence 4333222334455567778888888887763 222222221 35588888888887654 243333 5678
Q ss_pred ccEEEEecCCCCCC----C-C-CCCCCCccceeeccCccCceE-----eCccccCCCCCCCCCCcceeecccCccccccc
Q 007616 344 LVVLRFKNCNQCTT----L-P-SVGHLPSLKNLVIKGMAKVKS-----VGLEFCGNYCSEPFPSLETLCFEDMQEWEERI 412 (596)
Q Consensus 344 L~~L~l~~~~~~~~----l-~-~l~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 412 (596)
|++|++++|...+. + + ....+++|+.|++++|. ++. ++..+.. +++|+.|+++++. +.+..
T Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~------~~~L~~L~Ls~n~-i~~~~ 300 (461)
T 1z7x_W 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRA------KESLKELSLAGNE-LGDEG 300 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH------CTTCCEEECTTCC-CHHHH
T ss_pred ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhh------CCCcceEECCCCC-CchHH
Confidence 88888888863221 1 1 12357888888888874 333 2222222 6788888887642 11100
Q ss_pred eeEEecCCCCCCCCCCCCCCCCEEEEeeccC-------hhccCCCCCCcceEEecCCcccceeeEecccccccccCCccc
Q 007616 413 GLSIVRCPKLKGRLPQRFSSLERIVITSCEQ-------LLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEI 485 (596)
Q Consensus 413 ~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~-------l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~ 485 (596)
...+...+....++|+.|++++|.- ++..+..+++|++|++++|...-. +...+...++
T Consensus 301 ------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-----~~~~l~~~l~--- 366 (461)
T 1z7x_W 301 ------ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA-----GVRELCQGLG--- 366 (461)
T ss_dssp ------HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH-----HHHHHHHHHT---
T ss_pred ------HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc-----cHHHHHHHHc---
Confidence 0000001122346888888888862 233445678888888888852100 0000000000
Q ss_pred ccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccC---------CCCCC
Q 007616 486 RIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSF---------PENVL 556 (596)
Q Consensus 486 ~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~l---------p~~~~ 556 (596)
...++|+.| ++++|...+.+...++. .+..+++|++|++++|+ ++.. |. .
T Consensus 367 ------~~~~~L~~L-~L~~n~i~~~~~~~l~~-----------~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~--~ 425 (461)
T 1z7x_W 367 ------QPGSVLRVL-WLADCDVSDSSCSSLAA-----------TLLANHSLRELDLSNNC-LGDAGILQLVESVRQ--P 425 (461)
T ss_dssp ------STTCCCCEE-ECTTSCCCHHHHHHHHH-----------HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTS--T
T ss_pred ------CCCCceEEE-ECCCCCCChhhHHHHHH-----------HHHhCCCccEEECCCCC-CCHHHHHHHHHHhcc--C
Confidence 003578888 99998753333335555 45678899999999964 4432 21 1
Q ss_pred CCCccEEEEecC
Q 007616 557 PPSLVYLSIYLC 568 (596)
Q Consensus 557 ~~~L~~L~i~~C 568 (596)
..+|+.|.+.++
T Consensus 426 ~~~L~~L~~~~~ 437 (461)
T 1z7x_W 426 GCLLEQLVLYDI 437 (461)
T ss_dssp TCCCCEEECTTC
T ss_pred Ccchhheeeccc
Confidence 246777777655
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=4.3e-19 Score=191.58 Aligned_cols=367 Identities=17% Similarity=0.144 Sum_probs=172.7
Q ss_pred ccCCCcEEeecCCCcc-cccccccc-CC-cCcEEEcccccccc--ccCCcccCCCccceeecCCCCcccc----cccccc
Q 007616 165 ELKHLRYLDFSHTAIE-VLSESVST-LY-NLQTLILEYCYRLK--KLFPDIGNLVNLRHLKDSHSNLLEE----MPLRIG 235 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~-~lp~~i~~-l~-~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~l~~----lp~~l~ 235 (596)
.+++|++|+|++|.++ ..+..++. ++ +|++|++++|..+. .++..+.++++|++|++++|..... ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 7889999999999877 33455555 34 49999999885332 2333345788999999999973222 223345
Q ss_pred CCcccCCCCcEEeccCC--CCCch-hccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCc--chhhh
Q 007616 236 KLTSLRTLAKFVVGKGN--CSGLK-ELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKI--QTCVF 310 (596)
Q Consensus 236 ~l~~L~~L~~~~~~~~~--~~~l~-~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~ 310 (596)
.+++|++|++..+.... ...+. .+.++++|+ .+.+.++.. .. ....+..+++|+.|.++..... .....
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~-~L~L~~~~~----~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV-SVKVGDFEI----LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC-EEECSSCBG----GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc-EEeccCccH----HH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence 67778887764443321 00111 112233333 444433211 11 1223344455555554421110 01222
Q ss_pred hccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCC--CC-CCCCCCccceeeccCccCceEeCccccC
Q 007616 311 EMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTT--LP-SVGHLPSLKNLVIKGMAKVKSVGLEFCG 387 (596)
Q Consensus 311 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 387 (596)
..+..+++|+.|+++++....+|..+. .+++|++|++++|. ++. +. .++.+++|+.|++.++..-..+....
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~-- 338 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA-- 338 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGG--GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH--
T ss_pred HHhhccccccccCccccchhHHHHHHh--hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH--
Confidence 333344455555554443334444333 34455555555544 211 10 13444555555554221100000000
Q ss_pred CCCCCCCCCcceeeccc--CccccccceeEEecCCCCCCC----CCCCCCCCCEEEEeeccChh----ccCC-CCCCcce
Q 007616 388 NYCSEPFPSLETLCFED--MQEWEERIGLSIVRCPKLKGR----LPQRFSSLERIVITSCEQLL----VSYT-ALPPLCE 456 (596)
Q Consensus 388 ~~~~~~~~~L~~L~l~~--~~~l~~~~~l~l~~c~~L~~~----~p~~l~~L~~L~l~~c~~l~----~~~~-~l~~L~~ 456 (596)
..+++|++|++.+ ..... -..|+.+++. +...+++|++|++ .|..+. ..+. .+++|++
T Consensus 339 ----~~~~~L~~L~L~~g~~~~~~------~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 339 ----QYCKQLKRLRIERGADEQGM------EDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCD 407 (592)
T ss_dssp ----HHCTTCCEEEEECCCCSSTT------SSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCE
T ss_pred ----HhCCCCCEEEeecCcccccc------ccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcE
Confidence 0134455444442 00000 0004444321 1134788888888 444441 1222 3778888
Q ss_pred EEecCC---cccceeeEecccccccccCCccccccc---c--------ccc---chhhhccccccccccccccceecccC
Q 007616 457 LEIDGF---SELFLILQIQGWRSRAEILPQEIRIPN---Q--------ESL---LDGLQKLSHITRISMVGSLLVYIAEG 519 (596)
Q Consensus 457 L~l~~c---~~ll~~l~~~~~~~l~~~~p~l~~l~~---p--------~~~---l~~L~~L~~l~~c~~~~~~l~~~~~~ 519 (596)
|++++| +.+.....-.+...+...+++|+.+.+ . ..+ +++|+.| ++++|...+..+..
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~---- 482 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGLME---- 482 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE-EECSCCSSHHHHHH----
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe-eccCCCCCHHHHHH----
Confidence 888743 221000000000000111233333322 1 001 5667777 77777642222211
Q ss_pred CCCCCCCCCCCCCCCCCCCeeecCCCCCCcc--CCCC-CCCCCccEEEEecCc
Q 007616 520 GEFPQLESLSFVGNLTSLERLELPRCPVLRS--FPEN-VLPPSLVYLSIYLCP 569 (596)
Q Consensus 520 ~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~--lp~~-~~~~~L~~L~i~~C~ 569 (596)
.+..+++|++|++++|+ ++. ++.. ..+++|++|++++|.
T Consensus 483 ----------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 483 ----------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp ----------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ----------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 23567899999999987 443 2211 126789999999997
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.9e-17 Score=162.81 Aligned_cols=224 Identities=18% Similarity=0.159 Sum_probs=168.5
Q ss_pred cCCceeEEEEecccccccccccccccCccc-ccccCCCcEEeecCCCcccc---ccccccCCcCcEEEccccccccccCC
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPND-IAELKHLRYLDFSHTAIEVL---SESVSTLYNLQTLILEYCYRLKKLFP 208 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~~~~lp~ 208 (596)
.+.+++.+.+..+.+. .+|.. +..+++|++|++++|.++.+ |..+..+++|++|++++| .+..+|.
T Consensus 26 ~~~~l~~L~L~~n~l~---------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~ 95 (306)
T 2z66_A 26 IPSSATRLELESNKLQ---------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS 95 (306)
T ss_dssp CCTTCCEEECCSSCCC---------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEE
T ss_pred CCCCCCEEECCCCccC---------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChh
Confidence 4457778877766544 46654 68999999999999998855 677788999999999999 7888988
Q ss_pred cccCCCccceeecCCCCccccccc--cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhh-HHH
Q 007616 209 DIGNLVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAED-AKE 285 (596)
Q Consensus 209 ~i~~L~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~-~~~ 285 (596)
.+..+++|++|++++|. +..++. .+..+++|++|++.++.... .....+..++.|+ .+.+.+.. ... ..+
T Consensus 96 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~ 168 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLE-VLKMAGNS----FQENFLP 168 (306)
T ss_dssp EEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCC-EEECTTCE----EGGGEEC
T ss_pred hcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCC-EEECCCCc----cccccch
Confidence 89999999999999998 777764 58899999999876554322 1122344455555 66665422 111 223
Q ss_pred HhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCCCCCC-CCCC
Q 007616 286 AQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQCTTLP-SVGH 363 (596)
Q Consensus 286 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~ 363 (596)
..+..+++|+.|+++++.. ....+..+..+++|+.|++++|....++. .+. .+++|+.|++++|...+..+ .++.
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp SCCTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT--TCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred hHHhhCcCCCEEECCCCCc-CCcCHHHhcCCCCCCEEECCCCccCccChhhcc--CcccCCEeECCCCCCcccCHHHHHh
Confidence 4577889999999998863 33345667788999999999999877765 333 68999999999998666555 5777
Q ss_pred CC-ccceeeccCcc
Q 007616 364 LP-SLKNLVIKGMA 376 (596)
Q Consensus 364 l~-~L~~L~L~~~~ 376 (596)
++ +|+.|++++|+
T Consensus 246 ~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 246 FPSSLAFLNLTQND 259 (306)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhccCCEEEccCCC
Confidence 75 99999999876
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.1e-16 Score=166.43 Aligned_cols=224 Identities=21% Similarity=0.218 Sum_probs=154.7
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCc-c
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPD-I 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~-i 210 (596)
.+.+++.|.+..+.+.. ..|..|..+++|++|++++|.++.++ ..+..+++|++|++++| .+..+|.. +
T Consensus 73 ~~~~l~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 143 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQM--------IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAF 143 (452)
T ss_dssp CCTTCSEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTS
T ss_pred CCCCccEEECcCCcCce--------ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhh
Confidence 45677888887776654 34677899999999999999999775 67899999999999999 77777765 8
Q ss_pred cCCCccceeecCCCCccccccc-cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616 211 GNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 289 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 289 (596)
+.+++|++|++++|. +..+|. .+.++++|++|++.++........ ..+.
T Consensus 144 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-----------------------------~~~~ 193 (452)
T 3zyi_A 144 EYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE-----------------------------GAFE 193 (452)
T ss_dssp SSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-----------------------------TTTT
T ss_pred cccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh-----------------------------hhcc
Confidence 899999999999999 778876 488999999998654322111000 1244
Q ss_pred CccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCcc
Q 007616 290 GKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSL 367 (596)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L 367 (596)
++++|+.|+++.+.... ...+..+++|+.|++++|.+..+ |..+. .+++|+.|++++|......+ .++.+++|
T Consensus 194 ~l~~L~~L~L~~n~l~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TCTTCCEEECTTSCCSS---CCCCTTCTTCCEEECTTSCCSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCEEECCCCcccc---cccccccccccEEECcCCcCcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 55666666666654322 13455667777777777776555 33344 56777777777776443333 46667777
Q ss_pred ceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc
Q 007616 368 KNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ 406 (596)
Q Consensus 368 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 406 (596)
+.|++++|. +..++..... .+++|+.|++++.+
T Consensus 269 ~~L~L~~N~-l~~~~~~~~~-----~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VELNLAHNN-LSSLPHDLFT-----PLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECCSSC-CSCCCTTSST-----TCTTCCEEECCSSC
T ss_pred CEEECCCCc-CCccChHHhc-----cccCCCEEEccCCC
Confidence 777777763 4444433222 26777777777643
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=164.73 Aligned_cols=224 Identities=21% Similarity=0.238 Sum_probs=159.6
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCC-cc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DI 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i 210 (596)
++..++.+.+..+.+.. ..+..|..+++|++|+|++|.++.++ ..+.++++|++|++++| .+..+|. .+
T Consensus 62 ~~~~l~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 132 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQI--------IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAF 132 (440)
T ss_dssp CCTTCSEEECCSCCCCE--------ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTS
T ss_pred CCCCCcEEEccCCcCCe--------eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHh
Confidence 45667777777766554 23467899999999999999999775 67899999999999999 7888876 58
Q ss_pred cCCCccceeecCCCCccccccc-cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616 211 GNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 289 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 289 (596)
..+++|++|++++|. +..+|. .+.++++|++|++.++.... .++ ...+.
T Consensus 133 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~-----~i~------------------------~~~~~ 182 (440)
T 3zyj_A 133 VYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS-----YIS------------------------EGAFE 182 (440)
T ss_dssp CSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC-----EEC------------------------TTTTT
T ss_pred hccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcc-----eeC------------------------cchhh
Confidence 999999999999999 777776 48899999999865432111 000 01245
Q ss_pred CccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCcc
Q 007616 290 GKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSL 367 (596)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L 367 (596)
++++|+.|+++.+.... ...+..+++|+.|++++|....+ |..+. .+++|+.|++++|......+ .++.+++|
T Consensus 183 ~l~~L~~L~L~~n~l~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TCSSCCEEECTTSCCSS---CCCCTTCSSCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred cccccCeecCCCCcCcc---ccccCCCcccCEEECCCCccCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 56677777777664321 23456677888888888876665 33444 67888888888877443333 56778888
Q ss_pred ceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc
Q 007616 368 KNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ 406 (596)
Q Consensus 368 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 406 (596)
+.|+|++|. +..++..... .+++|+.|++++.+
T Consensus 258 ~~L~L~~N~-l~~~~~~~~~-----~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHNN-LTLLPHDLFT-----PLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTSC-CCCCCTTTTS-----SCTTCCEEECCSSC
T ss_pred CEEECCCCC-CCccChhHhc-----cccCCCEEEcCCCC
Confidence 888888864 4445443322 27788888887744
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=7.2e-19 Score=173.78 Aligned_cols=210 Identities=18% Similarity=0.131 Sum_probs=123.2
Q ss_pred ccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccC
Q 007616 163 IAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 241 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~ 241 (596)
+..+++|++|++++|.++.++ ..++.+++|++|++++| .+..+++ ++.+++|++|++++|. ++.+|. .++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----CTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCc-cccccC----CCCcC
Confidence 345668888888888888664 57788888888888888 5555544 7888888888888887 555542 24555
Q ss_pred CCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccE
Q 007616 242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKE 321 (596)
Q Consensus 242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 321 (596)
+|++.++.. ..+. ...+++|+.
T Consensus 103 ~L~l~~n~l--------------------------------------------~~~~--------------~~~~~~L~~ 124 (317)
T 3o53_A 103 TLHAANNNI--------------------------------------------SRVS--------------CSRGQGKKN 124 (317)
T ss_dssp EEECCSSCC--------------------------------------------SEEE--------------ECCCSSCEE
T ss_pred EEECCCCcc--------------------------------------------CCcC--------------ccccCCCCE
Confidence 554321110 0000 012356778
Q ss_pred EEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCCCCCC-CC-CCCCccceeeccCccCceEeCccccCCCCCCCCCCcc
Q 007616 322 LKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQCTTLP-SV-GHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLE 398 (596)
Q Consensus 322 L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 398 (596)
|++++|....++. .+. .+++|+.|++++|...+..+ .+ +.+++|+.|++++|. ++.++.. ..+++|+
T Consensus 125 L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~l~~L~ 194 (317)
T 3o53_A 125 IYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-------VVFAKLK 194 (317)
T ss_dssp EECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-------CCCTTCC
T ss_pred EECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccc-------cccccCC
Confidence 8888877666543 333 56777777777776443222 22 356777777777764 3333211 1256677
Q ss_pred eeecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeecc--ChhccCCCCCCcceEEecCCc
Q 007616 399 TLCFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCE--QLLVSYTALPPLCELEIDGFS 463 (596)
Q Consensus 399 ~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~ 463 (596)
.|+++++ +++ .+| ..+++|+.|++++|. .++..+..+++|+.|++++|+
T Consensus 195 ~L~Ls~N---------------~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 195 TLDLSSN---------------KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EEECCSS---------------CCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred EEECCCC---------------cCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 6666653 222 111 134566666666654 224445555666666666654
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=7.5e-19 Score=189.73 Aligned_cols=344 Identities=14% Similarity=0.057 Sum_probs=205.2
Q ss_pred ccccCCCcEEeecCCCccc-----cccccccCCcCcEEEccccccc----cccCCcccCCCccceeecCCCCcccccccc
Q 007616 163 IAELKHLRYLDFSHTAIEV-----LSESVSTLYNLQTLILEYCYRL----KKLFPDIGNLVNLRHLKDSHSNLLEEMPLR 233 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~----~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 233 (596)
...+++|++|++++|.++. ++..+..+++|++|++++|... ..++..+.++++|++|++++|. +..+|..
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~ 238 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF 238 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH
Confidence 3467888888888887652 3344567788888888887322 2444446678888888888887 6677777
Q ss_pred ccCCcccCCCCcEEeccC--CCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhh
Q 007616 234 IGKLTSLRTLAKFVVGKG--NCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE 311 (596)
Q Consensus 234 l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 311 (596)
++++++|++|++...... .......+..+.+++ .+.+.... ....+..+..+++|+.|+++++.........
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~-----~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC-RLGLSYMG-----PNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC-EEEETTCC-----TTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhcccccc-ccCccccc-----hhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 888888888876432111 122233445555555 56665421 1223344667888999999887743333335
Q ss_pred ccCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEec----------CCCCCC--CCC-CCCCCccceeeccCccC
Q 007616 312 MLKPHYGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKN----------CNQCTT--LPS-VGHLPSLKNLVIKGMAK 377 (596)
Q Consensus 312 ~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~----------~~~~~~--l~~-l~~l~~L~~L~L~~~~~ 377 (596)
.+..+++|+.|+++++... .++.... .+++|++|++++ |..++. ++. ...+++|+.|++.. ..
T Consensus 313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~--~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~ 389 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIGDRGLEVLAQ--YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SD 389 (592)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHH--HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SC
T ss_pred HHHhCcCCCEEeccCccCHHHHHHHHH--hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CC
Confidence 5677889999998844211 1222222 467899999984 554442 222 33578888888843 33
Q ss_pred ceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCC-----C---CCCCCCCCEEEEeeccC-h----
Q 007616 378 VKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGR-----L---PQRFSSLERIVITSCEQ-L---- 444 (596)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~-----~---p~~l~~L~~L~l~~c~~-l---- 444 (596)
+........+ ..+++|+.|++..+. .|+.+++. + ...+++|+.|++++|.. +
T Consensus 390 l~~~~~~~l~----~~~~~L~~L~l~~~~-----------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 390 ITNESLESIG----TYLKNLCDFRLVLLD-----------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp CCHHHHHHHH----HHCCSCCEEEEEECS-----------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred ccHHHHHHHH----hhCCCCcEEEEeecC-----------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 3221111000 116778877776432 23444421 1 12488999999988763 2
Q ss_pred -hccCCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCC
Q 007616 445 -LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGE 521 (596)
Q Consensus 445 -~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~ 521 (596)
......+++|++|++++|... + . .++..+ +++|+.| ++++|+..+..+..
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~-------~-----~--------~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~------ 507 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGES-------D-----E--------GLMEFSRGCPNLQKL-EMRGCCFSERAIAA------ 507 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSS-------H-----H--------HHHHHHTCCTTCCEE-EEESCCCBHHHHHH------
T ss_pred HHHHHHhCccceEeeccCCCCC-------H-----H--------HHHHHHhcCcccCee-eccCCCCcHHHHHH------
Confidence 122234888999999988621 0 0 011111 6889999 99999852221211
Q ss_pred CCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCC---CCCccEEEEec
Q 007616 522 FPQLESLSFVGNLTSLERLELPRCPVLRSFPENVL---PPSLVYLSIYL 567 (596)
Q Consensus 522 ~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~---~~~L~~L~i~~ 567 (596)
....+++|++|++++|+ ++......+ .|.+....+..
T Consensus 508 --------~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 508 --------AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp --------HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred --------HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 23467899999999987 554322112 35555554443
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.3e-16 Score=150.82 Aligned_cols=207 Identities=15% Similarity=0.162 Sum_probs=144.0
Q ss_pred cccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCC-CCccccccc
Q 007616 156 LHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSH-SNLLEEMPL 232 (596)
Q Consensus 156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~-~~~l~~lp~ 232 (596)
+..+|. +. .+|++|++++|.++.+|. .++.+++|++|++++|..++.+|. .++++++|++|++++ |. ++.+|.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCH
Confidence 336776 43 389999999999998876 788999999999999943777775 588999999999998 66 778775
Q ss_pred -cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhh
Q 007616 233 -RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE 311 (596)
Q Consensus 233 -~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 311 (596)
.+..+++|++|++.++.......+..+.++. .|+.|+++.+.........
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~-----------------------------~L~~L~l~~N~~l~~i~~~ 149 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPDLTKVYSTD-----------------------------IFFILEITDNPYMTSIPVN 149 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCCCTTCCBCC-----------------------------SEEEEEEESCTTCCEECTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccccccccccc-----------------------------cccEEECCCCcchhhcCcc
Confidence 4788999999998877654322111111111 1225555554112222233
Q ss_pred ccCCCCCcc-EEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCC-CccceeeccCccCceEeCccccC
Q 007616 312 MLKPHYGLK-ELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHL-PSLKNLVIKGMAKVKSVGLEFCG 387 (596)
Q Consensus 312 ~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l-~~L~~L~L~~~~~l~~~~~~~~~ 387 (596)
.+..+++|+ .|++++|....+|.... ..++|+.|++++|..++.++ .++.+ ++|+.|++++|. ++.++..
T Consensus 150 ~~~~l~~L~~~L~l~~n~l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--- 223 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNGFTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--- 223 (239)
T ss_dssp TTTTTBSSEEEEECCSCCCCEECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT---
T ss_pred cccchhcceeEEEcCCCCCcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh---
Confidence 455677888 88888888777776554 23688999999886555654 46777 889999998854 4455433
Q ss_pred CCCCCCCCCcceeecccCc
Q 007616 388 NYCSEPFPSLETLCFEDMQ 406 (596)
Q Consensus 388 ~~~~~~~~~L~~L~l~~~~ 406 (596)
.|++|+.|++.+..
T Consensus 224 -----~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 -----GLEHLKELIARNTW 237 (239)
T ss_dssp -----TCTTCSEEECTTC-
T ss_pred -----HhccCceeeccCcc
Confidence 27888888877654
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1e-16 Score=157.87 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=57.0
Q ss_pred ccCCCcEEeecCCCcc-cccccc--ccCCcCcEEEccccccccccCCcccCC-----CccceeecCCCCcccccc-cccc
Q 007616 165 ELKHLRYLDFSHTAIE-VLSESV--STLYNLQTLILEYCYRLKKLFPDIGNL-----VNLRHLKDSHSNLLEEMP-LRIG 235 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~~~~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp-~~l~ 235 (596)
.+++|++|++++|.++ .+|..+ +.+++|++|++++| .+..+|..++.+ ++|++|++++|. +..+| ..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 5777777777777776 566655 67777777777777 555556666666 777777777777 55555 5577
Q ss_pred CCcccCCCCcEEe
Q 007616 236 KLTSLRTLAKFVV 248 (596)
Q Consensus 236 ~l~~L~~L~~~~~ 248 (596)
++++|++|++.++
T Consensus 171 ~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 171 VFPALSTLDLSDN 183 (312)
T ss_dssp CCSSCCEEECCSC
T ss_pred cCCCCCEEECCCC
Confidence 7777777776544
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=2.1e-19 Score=194.19 Aligned_cols=203 Identities=18% Similarity=0.184 Sum_probs=120.3
Q ss_pred cccCCCcEEeecCCCcc-ccccccc-cCCcCcEEEccccccccc--cCCcccCCCccceeecCCCCcccc-----ccccc
Q 007616 164 AELKHLRYLDFSHTAIE-VLSESVS-TLYNLQTLILEYCYRLKK--LFPDIGNLVNLRHLKDSHSNLLEE-----MPLRI 234 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~-~lp~~i~-~l~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~l 234 (596)
..+++|++|+++++.++ ..+..+. .+++|++|++++|..++. ++..+.++++|++|++++|. +.. ++...
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 56788999999988877 3344454 688999999988855544 55545578889999998887 433 22223
Q ss_pred cCCcccCCCCcEEec-cCCCCCchhc-cchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCC-----cch
Q 007616 235 GKLTSLRTLAKFVVG-KGNCSGLKEL-RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNK-----IQT 307 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~-~~~~~~l~~l-~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-----~~~ 307 (596)
..+++|++|++..+. ......+..+ ..+++|+ .+.+.++. .... ....+..+++|+.|.+..+.. ...
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~-~L~L~~~~---~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLK-SLKLNRAV---PLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC-EEECCTTS---CHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc-EEecCCCC---cHHH-HHHHHhcCCcceEcccccccCccchhhHH
Confidence 366788888765443 0011112221 2235555 66666542 2222 555566778888887654421 011
Q ss_pred hhhhccCCCCCccEE-EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCC--CC-CCCCCCccceeeccCc
Q 007616 308 CVFEMLKPHYGLKEL-KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTT--LP-SVGHLPSLKNLVIKGM 375 (596)
Q Consensus 308 ~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~-~l~~l~~L~~L~L~~~ 375 (596)
.....+..+++|+.| .+.+.....++..+. .+++|++|++++|. ++. +. .++.+++|+.|++.+|
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 223345667777777 333332233333322 46788888888877 332 11 2456788888888876
No 66
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=3.9e-15 Score=149.06 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=105.6
Q ss_pred cEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEE
Q 007616 170 RYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV 247 (596)
Q Consensus 170 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~ 247 (596)
++++.++++++++|..+ .+++++|+|++| .++.+|+. ++++++|++|++++|...+.+|.+ +.++++++++....
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777888888888766 367888888888 77788764 788888888888888744556654 55566555432111
Q ss_pred eccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEecc
Q 007616 248 VGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGY 327 (596)
Q Consensus 248 ~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 327 (596)
.. +++.+ .+..+..+++|+.|++++|
T Consensus 89 ~N-------------------------------------------~l~~l-----------~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 89 AN-------------------------------------------NLLYI-----------NPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp ET-------------------------------------------TCCEE-----------CTTSBCCCTTCCEEEEEEE
T ss_pred CC-------------------------------------------ccccc-----------Cchhhhhcccccccccccc
Confidence 10 00000 1122345567888888888
Q ss_pred CCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCC-CccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616 328 GGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHL-PSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED 404 (596)
Q Consensus 328 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 404 (596)
....+|..... ...++..+++.++..+..++ .+..+ ..++.|++++| .++.++..... ..+|+.+.+.+
T Consensus 115 ~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~------~~~L~~l~l~~ 186 (350)
T 4ay9_X 115 GIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFN------GTQLDELNLSD 186 (350)
T ss_dssp CCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSST------TEEEEEEECTT
T ss_pred ccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhcc------ccchhHHhhcc
Confidence 87777654332 44567778887776666665 23444 45777888775 45566554332 34556555544
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=1.1e-16 Score=155.60 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=114.6
Q ss_pred ccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCccccc-cccccCC
Q 007616 161 NDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEM-PLRIGKL 237 (596)
Q Consensus 161 ~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~l~~l 237 (596)
..|..+++|++|++++|.++.+ |..++.+++|++|++++|..++.+ |..++.+++|++|++++|. +..+ |..+.++
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 128 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGL 128 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCC
Confidence 3455666666666666666654 445666666666666666324444 4446666666666666666 4443 3335556
Q ss_pred cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616 238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY 317 (596)
Q Consensus 238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (596)
++|++|++.++.... .....+..+++|+.|+++.+.. .......+..++
T Consensus 129 ~~L~~L~l~~n~l~~------------------------------~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~ 177 (285)
T 1ozn_A 129 AALQYLYLQDNALQA------------------------------LPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLH 177 (285)
T ss_dssp TTCCEEECCSSCCCC------------------------------CCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT
T ss_pred cCCCEEECCCCcccc------------------------------cCHhHhccCCCccEEECCCCcc-cccCHHHhcCcc
Confidence 666666543332211 0112255677888888877653 222233466788
Q ss_pred CccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccC
Q 007616 318 GLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAK 377 (596)
Q Consensus 318 ~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~ 377 (596)
+|+.|++++|....+ |.++. .+++|+.|++++|... .++ .++.+++|+.|++++|+.
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFR--DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCEEECCCCcccccCHhHcc--CcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCc
Confidence 999999999987665 55565 7889999999998744 444 478899999999998763
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=9.2e-17 Score=158.62 Aligned_cols=212 Identities=14% Similarity=0.126 Sum_probs=145.4
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 214 (596)
.+++.+.+..+.+.. ..|..++.+++|++|++++|.++..++ +..+++|++|++++| .+..+|. .+
T Consensus 34 ~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~ 99 (317)
T 3o53_A 34 WNVKELDLSGNPLSQ--------ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GP 99 (317)
T ss_dssp GGCSEEECTTSCCCC--------CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CT
T ss_pred CCCCEEECcCCccCc--------CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC----CC
Confidence 467777777665553 345678999999999999999997766 999999999999999 7776653 48
Q ss_pred ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL 294 (596)
Q Consensus 215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L 294 (596)
+|++|++++|. +..++.. .+++|++|++.++.... +. ...+..+++|
T Consensus 100 ~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~------~~------------------------~~~~~~l~~L 146 (317)
T 3o53_A 100 SIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITM------LR------------------------DLDEGCRSRV 146 (317)
T ss_dssp TCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCS------GG------------------------GBCTGGGSSE
T ss_pred CcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCC------cc------------------------chhhhccCCC
Confidence 99999999998 7776653 36778888765443221 10 1123445667
Q ss_pred ccccccccCCcchhhhhcc-CCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeecc
Q 007616 295 EALSPKWGNKIQTCVFEML-KPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIK 373 (596)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~ 373 (596)
+.|+++++...... +..+ ..+++|+.|++++|....++... .+++|+.|++++|...+..+.++.+++|+.|+++
T Consensus 147 ~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 147 QYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp EEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred CEEECCCCCCCccc-HHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence 77777766532222 2222 34678888888888776665443 3678888888888744333356778888888888
Q ss_pred CccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616 374 GMAKVKSVGLEFCGNYCSEPFPSLETLCFED 404 (596)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 404 (596)
+|. ++.++..+.. +++|+.|++++
T Consensus 223 ~N~-l~~l~~~~~~------l~~L~~L~l~~ 246 (317)
T 3o53_A 223 NNK-LVLIEKALRF------SQNLEHFDLRG 246 (317)
T ss_dssp TSC-CCEECTTCCC------CTTCCEEECTT
T ss_pred CCc-ccchhhHhhc------CCCCCEEEccC
Confidence 863 4556544322 56667666665
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=7.2e-16 Score=149.82 Aligned_cols=205 Identities=20% Similarity=0.182 Sum_probs=132.9
Q ss_pred cCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCccccc-cccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEM-PLRI 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~l 234 (596)
.+|..+ .++|++|++++|.++.+| ..++.+++|++|++++| .+..+ |..++++++|++|++++|..++.+ |..+
T Consensus 25 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 566544 468999999999999876 46899999999999999 56655 677999999999999999756776 5568
Q ss_pred cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616 235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK 314 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (596)
..+++|++|++.++.... + ....+..+++|+.|+++++.. .......+.
T Consensus 102 ~~l~~L~~L~l~~n~l~~------~------------------------~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~ 150 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQE------L------------------------GPGLFRGLAALQYLYLQDNAL-QALPDDTFR 150 (285)
T ss_dssp TTCTTCCEEECTTSCCCC------C------------------------CTTTTTTCTTCCEEECCSSCC-CCCCTTTTT
T ss_pred cCCcCCCEEECCCCcCCE------E------------------------CHhHhhCCcCCCEEECCCCcc-cccCHhHhc
Confidence 888888888764332211 0 001244556666666665542 222223355
Q ss_pred CCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616 315 PHYGLKELKVRGYGGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE 392 (596)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 392 (596)
.+++|+.|++++|....++.. +. .+++|+.|++++|...+..+ .++.+++|+.|++++|. +..++.....
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~----- 222 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALA----- 222 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHT-----
T ss_pred cCCCccEEECCCCcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcc-----
Confidence 566777777777766655543 33 56677777777776443333 46667777777777653 3333322111
Q ss_pred CCCCcceeeccc
Q 007616 393 PFPSLETLCFED 404 (596)
Q Consensus 393 ~~~~L~~L~l~~ 404 (596)
.+++|+.|++++
T Consensus 223 ~l~~L~~L~l~~ 234 (285)
T 1ozn_A 223 PLRALQYLRLND 234 (285)
T ss_dssp TCTTCCEEECCS
T ss_pred cCcccCEEeccC
Confidence 155666665555
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=5.5e-16 Score=152.17 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=80.3
Q ss_pred ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 242 (596)
+..+++|++|++++|.++.++. +..+++|++|++++| .+..+| .++.+++|++|++++|. +..+|. +..+++|++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCE
Confidence 4455555555555555555544 555555555555555 344443 35555555555555555 444443 455555555
Q ss_pred CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616 243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322 (596)
Q Consensus 243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 322 (596)
|++.++...... .+..+++|+.|+++.+..... ..+..+++|+.|
T Consensus 134 L~l~~n~l~~~~--------------------------------~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L 178 (308)
T 1h6u_A 134 LYLDLNQITNIS--------------------------------PLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTL 178 (308)
T ss_dssp EECCSSCCCCCG--------------------------------GGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEE
T ss_pred EECCCCccCcCc--------------------------------cccCCCCccEEEccCCcCCCC---hhhcCCCCCCEE
Confidence 544322211000 023334444444444432111 114445555555
Q ss_pred EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCc
Q 007616 323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGM 375 (596)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~ 375 (596)
++++|....++. +. .+++|+.|++++|. ++.++.+..+++|+.|++++|
T Consensus 179 ~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 179 KADDNKISDISP-LA--SLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp ECCSSCCCCCGG-GG--GCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEE
T ss_pred ECCCCccCcChh-hc--CCCCCCEEEccCCc-cCccccccCCCCCCEEEccCC
Confidence 555555544443 22 45555555555554 223334555555555555554
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=2.2e-15 Score=150.90 Aligned_cols=226 Identities=17% Similarity=0.137 Sum_probs=151.8
Q ss_pred cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCCc-ccCCCccceeec-CCCCcccccccc-
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKD-SHSNLLEEMPLR- 233 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l-~~~~~l~~lp~~- 233 (596)
++|..+ .+++++|+|++|+|+.+|+ .|.++++|++|+|++|...+.+|.. +.++++|+.+.. ++|. +..+|++
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~ 99 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEA 99 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTS
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchh
Confidence 678766 3689999999999999986 5899999999999999555667754 788999887554 4555 8888654
Q ss_pred ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616 234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML 313 (596)
Q Consensus 234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 313 (596)
+..+++|++|++.++............. .++..+++..+..........+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------~~l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHS------------------------------LQKVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCB------------------------------SSCEEEEEESCTTCCEECTTSS
T ss_pred hhhccccccccccccccccCCchhhccc------------------------------chhhhhhhccccccccccccch
Confidence 8899999999998887644322211111 1122222221111111111112
Q ss_pred CC-CCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCC
Q 007616 314 KP-HYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC 390 (596)
Q Consensus 314 ~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 390 (596)
.. ...++.|++++|.+..+|.... ...+|+.+++.++..++.+| .++.+++|+.|++++| .++.++...
T Consensus 150 ~~~~~~l~~L~L~~N~i~~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~----- 221 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG----- 221 (350)
T ss_dssp TTSBSSCEEEECCSSCCCEECTTSS--TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS-----
T ss_pred hhcchhhhhhccccccccCCChhhc--cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh-----
Confidence 22 2457888999988888877655 45688999998888788887 3688999999999986 466665432
Q ss_pred CCCCCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEee
Q 007616 391 SEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITS 440 (596)
Q Consensus 391 ~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~ 440 (596)
|.+|+.|.+.++.+++.+. .+ ..+++|+.+++.+
T Consensus 222 ---~~~L~~L~~l~~~~l~~lP--------~l-----~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 222 ---LENLKKLRARSTYNLKKLP--------TL-----EKLVALMEASLTY 255 (350)
T ss_dssp ---CTTCCEEECTTCTTCCCCC--------CT-----TTCCSCCEEECSC
T ss_pred ---hccchHhhhccCCCcCcCC--------Cc-----hhCcChhhCcCCC
Confidence 6777777766665544331 11 3577788777754
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=2.3e-16 Score=165.01 Aligned_cols=219 Identities=14% Similarity=0.126 Sum_probs=130.4
Q ss_pred Ccccccc----cCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc
Q 007616 159 LPNDIAE----LKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR 233 (596)
Q Consensus 159 lp~~~~~----l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 233 (596)
+|..+.. +++|++|++++|.++.++ ..++.+++|++|++++| .+...++ ++.+++|++|++++|. ++.+|..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~ 98 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-VQELLVG 98 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSE-EEEEEEC
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCc-CCCCCCC
Confidence 4444444 348999999999988764 57889999999999998 5655544 8889999999999987 7776643
Q ss_pred ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616 234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML 313 (596)
Q Consensus 234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 313 (596)
++|++|++.++...... ... ++.|+ .+.+.+.. .....+..+..+++|+.|+++++.... ..+..+
T Consensus 99 ----~~L~~L~L~~N~l~~~~-~~~---l~~L~-~L~L~~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l 164 (487)
T 3oja_A 99 ----PSIETLHAANNNISRVS-CSR---GQGKK-NIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAEL 164 (487)
T ss_dssp ----TTCCEEECCSSCCCCEE-ECC---CSSCE-EEECCSSC----CCSGGGBCGGGGSSEEEEECTTSCCCE-EEGGGG
T ss_pred ----CCcCEEECcCCcCCCCC-ccc---cCCCC-EEECCCCC----CCCCCchhhcCCCCCCEEECCCCCCCC-cChHHH
Confidence 77888877655443211 111 22233 44443321 111222234556667777776665322 223333
Q ss_pred C-CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616 314 K-PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE 392 (596)
Q Consensus 314 ~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 392 (596)
. .+++|+.|++++|.+..+|... .+++|+.|++++|...+..+.++.+++|+.|++++|. +..++..+..
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~----- 235 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRF----- 235 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCC-----
T ss_pred hhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchhhcc-----
Confidence 2 4566777777776665554332 3566777777766643333355666677777776653 3344443322
Q ss_pred CCCCcceeeccc
Q 007616 393 PFPSLETLCFED 404 (596)
Q Consensus 393 ~~~~L~~L~l~~ 404 (596)
+++|+.|++++
T Consensus 236 -l~~L~~L~l~~ 246 (487)
T 3oja_A 236 -SQNLEHFDLRG 246 (487)
T ss_dssp -CTTCCEEECTT
T ss_pred -CCCCCEEEcCC
Confidence 55666665555
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=9.8e-15 Score=140.49 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=63.5
Q ss_pred cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. +++++|++++|.++.+|. .++.+++|++|++++| .+..+|.. +.++++|++|++++|. +..+|.. +
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 105 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVF 105 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHc
Confidence 4565543 578888888888887764 6788888888888888 67777765 4778888888888887 6676654 5
Q ss_pred cCCcccCCCCcE
Q 007616 235 GKLTSLRTLAKF 246 (596)
Q Consensus 235 ~~l~~L~~L~~~ 246 (596)
..+++|++|++.
T Consensus 106 ~~l~~L~~L~l~ 117 (270)
T 2o6q_A 106 DQLVNLAELRLD 117 (270)
T ss_dssp TTCSSCCEEECC
T ss_pred ccccCCCEEECC
Confidence 667777777653
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=3e-19 Score=186.58 Aligned_cols=358 Identities=19% Similarity=0.127 Sum_probs=209.8
Q ss_pred CCCcEEeecCCCccccc--cccccCCcCcEEEcccccccc-----ccCCcccCCCccceeecCCCCcccc-ccccc-cCC
Q 007616 167 KHLRYLDFSHTAIEVLS--ESVSTLYNLQTLILEYCYRLK-----KLFPDIGNLVNLRHLKDSHSNLLEE-MPLRI-GKL 237 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~l-~~l 237 (596)
++|++|+++++.++..+ ..+..+++|++|++++| .+. .+|..+..+++|++|++++|. +.. .+..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence 57899999999998543 34788999999999999 555 557778889999999999998 544 23222 234
Q ss_pred c----ccCCCCcEEeccCCC---CCchhccchhhccceEEEcCcCCCCCHhhHHHHh-cCCccccccccccccCCcch--
Q 007616 238 T----SLRTLAKFVVGKGNC---SGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ-LNGKKKLEALSPKWGNKIQT-- 307 (596)
Q Consensus 238 ~----~L~~L~~~~~~~~~~---~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~-- 307 (596)
. +|++|++.++..... .....+..++.|+ .+.+.+..-.......+... ....++|+.|+++++.....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ-ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCC-EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCcee-EEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 4 689998766654321 1123345566666 66666533111111112222 23356788888887764322
Q ss_pred -hhhhccCCCCCccEEEEeccCCCCCC-CCCCC---CCCCCccEEEEecCCCCCC----CC-CCCCCCccceeeccCccC
Q 007616 308 -CVFEMLKPHYGLKELKVRGYGGTKFP-AWLGQ---SSFENLVVLRFKNCNQCTT----LP-SVGHLPSLKNLVIKGMAK 377 (596)
Q Consensus 308 -~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~----l~-~l~~l~~L~~L~L~~~~~ 377 (596)
.....+..+++|+.|++++|...... ..+.. ...++|++|++++|..... ++ .+..+++|+.|++++|.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 238 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK- 238 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-
Confidence 22444555678888888887643211 00100 0245788888888864332 22 34567888888888874
Q ss_pred ceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC---CCCCCCEEEEeeccCh-------hcc
Q 007616 378 VKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ---RFSSLERIVITSCEQL-------LVS 447 (596)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~l-------~~~ 447 (596)
++..+.......-...+++|+.|+++++ .+.... + . .++. .+++|++|++++|.-- ...
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~------~---~-~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKG------C---G-DLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHH------H---H-HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHH------H---H-HHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 3222100000000012678888888775 222100 0 0 0221 3688888888887521 111
Q ss_pred -CCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCC
Q 007616 448 -YTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQ 524 (596)
Q Consensus 448 -~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~ 524 (596)
....++|++|++++|... -.++. .++..+ +++|+.| ++++|...+.+...+..
T Consensus 308 l~~~~~~L~~L~L~~n~l~-----~~~~~------------~l~~~l~~~~~L~~L-~Ls~n~i~~~~~~~l~~------ 363 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCSFT-----AACCS------------HFSSVLAQNRFLLEL-QISNNRLEDAGVRELCQ------ 363 (461)
T ss_dssp HTSTTCCCCEEECTTSCCB-----GGGHH------------HHHHHHHHCSSCCEE-ECCSSBCHHHHHHHHHH------
T ss_pred hccCCccceeeEcCCCCCc-----hHHHH------------HHHHHHhhCCCccEE-EccCCccccccHHHHHH------
Confidence 223468888888888621 00011 122222 6889999 99999753322222222
Q ss_pred CCCCCCCC-CCCCCCeeecCCCCCCc-----cCCCC-CCCCCccEEEEecCc
Q 007616 525 LESLSFVG-NLTSLERLELPRCPVLR-----SFPEN-VLPPSLVYLSIYLCP 569 (596)
Q Consensus 525 L~~l~~~~-~l~~L~~L~l~~c~~l~-----~lp~~-~~~~~L~~L~i~~C~ 569 (596)
.+. ..++|++|++++|. ++ .+|.. ...++|++|++++|+
T Consensus 364 -----~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 364 -----GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp -----HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred -----HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 122 26799999999974 55 44432 126899999999985
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.5e-15 Score=146.83 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=54.1
Q ss_pred cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccc-ccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMP-LRI 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~l 234 (596)
.+|..+. ++|++|++++|.++.++. .+..+++|++|++++| .+..++. .++++++|++|++++|. +..++ ..+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 4555443 467777777777776654 5667777777777777 5555543 46677777777777776 55544 346
Q ss_pred cCCcccCCCCcE
Q 007616 235 GKLTSLRTLAKF 246 (596)
Q Consensus 235 ~~l~~L~~L~~~ 246 (596)
.++++|++|++.
T Consensus 97 ~~l~~L~~L~l~ 108 (276)
T 2z62_A 97 SGLSSLQKLVAV 108 (276)
T ss_dssp TTCTTCCEEECT
T ss_pred cCCccccEEECC
Confidence 666777766653
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=6.3e-16 Score=152.21 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=159.0
Q ss_pred cCcccccccCCCcEEeecCCCcc--ccccccc-------cCCcCcEEEccccccccccCCcc--cCCCccceeecCCCCc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIE--VLSESVS-------TLYNLQTLILEYCYRLKKLFPDI--GNLVNLRHLKDSHSNL 226 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~~~~~lp~~i--~~L~~L~~L~l~~~~~ 226 (596)
.+|..+... |++|++++|.+. .+|..+. .+++|++|++++|.....+|..+ +.+++|++|++++|.
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~- 132 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS- 132 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-
Confidence 457766554 999999999986 4676665 79999999999995445788876 899999999999999
Q ss_pred cccccccccCC-----cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhc--CCccccccccc
Q 007616 227 LEEMPLRIGKL-----TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL--NGKKKLEALSP 299 (596)
Q Consensus 227 l~~lp~~l~~l-----~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l--~~~~~L~~L~l 299 (596)
+..+|..++.+ ++|++|++.++.... .....+..+++|+ .+.+.+.... ........+ ..+++|+.|++
T Consensus 133 l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~-~L~Ls~N~l~--~~~~~~~~~~~~~l~~L~~L~L 208 (312)
T 1wwl_A 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALS-TLDLSDNPEL--GERGLISALCPLKFPTLQVLAL 208 (312)
T ss_dssp CSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCC-EEECCSCTTC--HHHHHHHHSCTTSCTTCCEEEC
T ss_pred CcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCC-EEECCCCCcC--cchHHHHHHHhccCCCCCEEEC
Confidence 77778778777 899999988776643 2223455556666 6677653211 111122233 78889999999
Q ss_pred cccCCcch-hhh-hccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCC-CCCCCccceeeccCcc
Q 007616 300 KWGNKIQT-CVF-EMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPS-VGHLPSLKNLVIKGMA 376 (596)
Q Consensus 300 ~~~~~~~~-~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 376 (596)
+.+..... ... ..+..+++|+.|++++|.....+.......+++|+.|++++|... .+|. +. ++|+.|++++|.
T Consensus 209 ~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp TTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred CCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 88764321 122 233456889999999988766542111125688999999998844 6663 43 889999998864
Q ss_pred CceEeCccccCCCCCCCCCCcceeeccc
Q 007616 377 KVKSVGLEFCGNYCSEPFPSLETLCFED 404 (596)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 404 (596)
++.++. +. .+++|+.|++++
T Consensus 286 -l~~~p~-~~------~l~~L~~L~L~~ 305 (312)
T 1wwl_A 286 -LDRNPS-PD------ELPQVGNLSLKG 305 (312)
T ss_dssp -CCSCCC-TT------TSCEEEEEECTT
T ss_pred -CCCChh-Hh------hCCCCCEEeccC
Confidence 444433 32 278888888776
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=4.7e-15 Score=143.35 Aligned_cols=202 Identities=17% Similarity=0.137 Sum_probs=142.9
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccC-Ccc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLF-PDI 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i 210 (596)
.+..++.+.+..+.+.. ..+..+..+++|++|++++|.++.++. .++.+++|++|++++| .+..++ ..+
T Consensus 26 l~~~l~~L~ls~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRH--------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF 96 (276)
T ss_dssp SCTTCCEEECTTCCCCE--------ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred CCCCccEEECCCCcccc--------cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhh
Confidence 45567888877765553 123478899999999999999998765 7899999999999999 666655 669
Q ss_pred cCCCccceeecCCCCccccccc-cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616 211 GNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 289 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 289 (596)
+++++|++|++++|. +..++. .++++++|++|++.++......... .+.
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-----------------------------~~~ 146 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-----------------------------YFS 146 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-----------------------------GGG
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCch-----------------------------hhc
Confidence 999999999999998 666665 5889999999987655432211111 244
Q ss_pred CccccccccccccCCcch--hhhhccCCCCCcc-EEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCC
Q 007616 290 GKKKLEALSPKWGNKIQT--CVFEMLKPHYGLK-ELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHL 364 (596)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l 364 (596)
.+++|+.|+++++..... ..+..+..++.+. .|++++|....++.... ...+|+.|++++|. ++.++ .++.+
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~-l~~~~~~~~~~l 223 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQ-LKSVPDGIFDRL 223 (276)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSC-CSCCCTTTTTTC
T ss_pred cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCc-eeecCHhHhccc
Confidence 455666666666543211 1222333333343 78888888777766554 34589999999887 44444 35778
Q ss_pred CccceeeccCcc
Q 007616 365 PSLKNLVIKGMA 376 (596)
Q Consensus 365 ~~L~~L~L~~~~ 376 (596)
++|+.|++++|+
T Consensus 224 ~~L~~L~l~~N~ 235 (276)
T 2z62_A 224 TSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEECCSSC
T ss_pred ccccEEEccCCc
Confidence 899999998865
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1.2e-14 Score=141.15 Aligned_cols=83 Identities=24% Similarity=0.276 Sum_probs=43.5
Q ss_pred cCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCC
Q 007616 313 LKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC 390 (596)
Q Consensus 313 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 390 (596)
+..+++|+.|++++|....+|.... ..+++|+.|++++|.. +.+| .+..+++|+.|++++|. ++.++..+..
T Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~--- 193 (290)
T 1p9a_G 120 LRGLGELQELYLKGNELKTLPPGLL-TPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENS-LYTIPKGFFG--- 193 (290)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT---
T ss_pred HcCCCCCCEEECCCCCCCccChhhc-ccccCCCEEECCCCcC-CccCHHHhcCcCCCCEEECCCCc-CCccChhhcc---
Confidence 3444566666666666555554322 1456666666666653 3343 24556666666666643 3444443332
Q ss_pred CCCCCCcceeeccc
Q 007616 391 SEPFPSLETLCFED 404 (596)
Q Consensus 391 ~~~~~~L~~L~l~~ 404 (596)
.++|+.+.+.+
T Consensus 194 ---~~~L~~l~L~~ 204 (290)
T 1p9a_G 194 ---SHLLPFAFLHG 204 (290)
T ss_dssp ---TCCCSEEECCS
T ss_pred ---cccCCeEEeCC
Confidence 34555555554
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=6.6e-15 Score=141.81 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=83.0
Q ss_pred cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc-ccCCcccCC
Q 007616 164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRT 242 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~ 242 (596)
..+++|+.|+++++.++.++ .++.+++|++|++++| .+..++ .++.+++|++|++++|. +..+|.. ++++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence 44555555566555555543 2555555666666555 444443 45555556666665555 4444433 455555555
Q ss_pred CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616 243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322 (596)
Q Consensus 243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 322 (596)
|++.++.... +. ...+..+++|+.|+++++.. .......+..+++|+.|
T Consensus 114 L~L~~n~l~~------~~------------------------~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 114 LVLVENQLQS------LP------------------------DGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp EECTTSCCCC------CC------------------------TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred EECCCCcCCc------cC------------------------HHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEE
Confidence 5432221110 00 00122233333333333321 11111223344556666
Q ss_pred EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616 323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 376 (596)
++++|....++.... ..+++|+.|++++|...+..+ .++.+++|+.|++++|+
T Consensus 163 ~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCcCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 666665555444321 145666666666665333222 24556666666666653
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=9.9e-15 Score=143.53 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=39.0
Q ss_pred CCCcEEeecCCCcc-cccccc--ccCCcCcEEEccccccccccC----CcccCCCccceeecCCCCcccccc-ccccCCc
Q 007616 167 KHLRYLDFSHTAIE-VLSESV--STLYNLQTLILEYCYRLKKLF----PDIGNLVNLRHLKDSHSNLLEEMP-LRIGKLT 238 (596)
Q Consensus 167 ~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~~~~~lp----~~i~~L~~L~~L~l~~~~~l~~lp-~~l~~l~ 238 (596)
++|++|++++|.+. ..|..+ +.+++|++|++++|......| ..+..+++|++|++++|. +..+| ..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence 44555555555555 334444 555555555555552222221 123345555555555555 33333 3355555
Q ss_pred ccCCCCcEE
Q 007616 239 SLRTLAKFV 247 (596)
Q Consensus 239 ~L~~L~~~~ 247 (596)
+|++|++.+
T Consensus 170 ~L~~L~Ls~ 178 (310)
T 4glp_A 170 ALTSLDLSD 178 (310)
T ss_dssp TCCEEECCS
T ss_pred CCCEEECCC
Confidence 555555433
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.8e-15 Score=158.18 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=170.1
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 214 (596)
.+++.|.+..+.+.. ..|..|+.+++|++|+|++|.++..++ ++.+++|++|++++| .+..+|. .+
T Consensus 34 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~ 99 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ--------ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GP 99 (487)
T ss_dssp GGCCEEECCSSCCCC--------CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CT
T ss_pred CCccEEEeeCCcCCC--------CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CC
Confidence 467788887766554 345789999999999999999997765 999999999999999 7777764 38
Q ss_pred ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC-Cccc
Q 007616 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN-GKKK 293 (596)
Q Consensus 215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~-~~~~ 293 (596)
+|++|++++|. +..+|.. .+++|++|++.++..... ....+..++.|+ .+.+.+..- ....+..+. .+++
T Consensus 100 ~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~-~L~Ls~N~l----~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 100 SIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITML-RDLDEGCRSRVQ-YLDLKLNEI----DTVNFAELAASSDT 170 (487)
T ss_dssp TCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSG-GGBCGGGGSSEE-EEECTTSCC----CEEEGGGGGGGTTT
T ss_pred CcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCC-CchhhcCCCCCC-EEECCCCCC----CCcChHHHhhhCCc
Confidence 99999999998 7776653 468899998876665432 112334455555 666655321 122223343 6889
Q ss_pred cccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeec
Q 007616 294 LEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVI 372 (596)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L 372 (596)
|+.|+++++..... .....+++|+.|++++|....+|+.+. .+++|+.|++++|... .+| .++.+++|+.|++
T Consensus 171 L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 171 LEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQ--SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (487)
T ss_dssp CCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGG--GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred ccEEecCCCccccc---cccccCCCCCEEECCCCCCCCCCHhHc--CCCCccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence 99999998864332 334458999999999999988887766 7899999999999854 455 6888999999999
Q ss_pred cCccCc-eEeCccccCCCCCCCCCCcceeecc
Q 007616 373 KGMAKV-KSVGLEFCGNYCSEPFPSLETLCFE 403 (596)
Q Consensus 373 ~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~ 403 (596)
++|+.. ..++..+.. ++.|+.+.+.
T Consensus 245 ~~N~l~c~~~~~~~~~------l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSK------NQRVQTVAKQ 270 (487)
T ss_dssp TTCCBCHHHHHHHHTT------CHHHHHHHHH
T ss_pred CCCCCcCcchHHHHHh------CCCCcEEecc
Confidence 998754 222222222 5666666654
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=2.4e-16 Score=157.26 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=58.1
Q ss_pred ccccc--CCCcEEeecCCCccccccccccCCcCcEEEcccccccc-c-cCCcccCCCccceeecCCCCccccccccccCC
Q 007616 162 DIAEL--KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLK-K-LFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237 (596)
Q Consensus 162 ~~~~l--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l 237 (596)
.+..+ +++++|++++|.+...+..+..+++|++|++++|. +. . +|..++.+++|++|++++|......|..++++
T Consensus 63 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 34555 67777888877777666566677788888887773 43 2 66667777788888888776333556667777
Q ss_pred cccCCCCcEE
Q 007616 238 TSLRTLAKFV 247 (596)
Q Consensus 238 ~~L~~L~~~~ 247 (596)
++|++|++.+
T Consensus 142 ~~L~~L~L~~ 151 (336)
T 2ast_B 142 SNLVRLNLSG 151 (336)
T ss_dssp TTCSEEECTT
T ss_pred CCCCEEECCC
Confidence 7777776543
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=9.1e-14 Score=133.68 Aligned_cols=148 Identities=21% Similarity=0.240 Sum_probs=100.2
Q ss_pred CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccCCCC
Q 007616 167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLA 244 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~ 244 (596)
.+.++++++++.++.+|..+. ++|++|++++| .+..+|. .++++++|++|++++|. +..+|.+ +.++++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEE
Confidence 357899999999999998665 68999999999 6777775 69999999999999998 7888876 46788888876
Q ss_pred cEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEE
Q 007616 245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV 324 (596)
Q Consensus 245 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 324 (596)
+.++.... + ....+..+++|+.|++
T Consensus 92 l~~n~l~~------~-------------------------------------------------~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 92 VTDNKLQA------L-------------------------------------------------PIGVFDQLVNLAELRL 116 (270)
T ss_dssp CCSSCCCC------C-------------------------------------------------CTTTTTTCSSCCEEEC
T ss_pred CCCCcCCc------C-------------------------------------------------CHhHcccccCCCEEEC
Confidence 53322110 0 0011223455666666
Q ss_pred eccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCc
Q 007616 325 RGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGM 375 (596)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~ 375 (596)
++|....++.... ..+++|+.|++++|.. +.++ .++.+++|+.|++++|
T Consensus 117 ~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 117 DRNQLKSLPPRVF-DSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CSSCCCCCCTTTT-TTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCeeCHHHh-CcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCC
Confidence 6666555544321 1566777777777653 3333 2566677777777665
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=3.7e-14 Score=133.76 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=143.2
Q ss_pred CCccEEEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCC
Q 007616 317 YGLKELKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEP 393 (596)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 393 (596)
++++.|++++|....+|. .+. .+++|++|++++|..++.++ .++.+++|+.|++++|+.++.++..... .
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-----~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-----E 103 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-----C
T ss_pred CcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-----C
Confidence 479999999999888776 344 78999999999997566665 5778999999999986677777654332 2
Q ss_pred CCCcceeecccCccccccceeEEecCCCCCCCCC--CCCCCCC---EEEEeeccCh----hccCCCCCCcc-eEEecCCc
Q 007616 394 FPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP--QRFSSLE---RIVITSCEQL----LVSYTALPPLC-ELEIDGFS 463 (596)
Q Consensus 394 ~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p--~~l~~L~---~L~l~~c~~l----~~~~~~l~~L~-~L~l~~c~ 463 (596)
+++|+.|++++. +++ .+| ..+++|+ .|++++++.+ +..+..+++|+ +|++++|.
T Consensus 104 l~~L~~L~l~~n---------------~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 104 LPLLKFLGIFNT---------------GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp CTTCCEEEEEEE---------------CCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCCCEEeCCCC---------------CCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 889999888873 222 233 2456666 9999998444 23477899999 99999886
Q ss_pred ccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCC-CCCCee
Q 007616 464 ELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNL-TSLERL 540 (596)
Q Consensus 464 ~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l-~~L~~L 540 (596)
.. .+|... .++|+.| ++++|+. ++.++.. .+..+ ++|+.|
T Consensus 168 l~----------------------~i~~~~~~~~~L~~L-~L~~n~~----l~~i~~~----------~~~~l~~~L~~L 210 (239)
T 2xwt_C 168 FT----------------------SVQGYAFNGTKLDAV-YLNKNKY----LTVIDKD----------AFGGVYSGPSLL 210 (239)
T ss_dssp CC----------------------EECTTTTTTCEEEEE-ECTTCTT----CCEECTT----------TTTTCSBCCSEE
T ss_pred Cc----------------------ccCHhhcCCCCCCEE-EcCCCCC----cccCCHH----------HhhccccCCcEE
Confidence 21 123322 4679999 9999975 6677653 56778 999999
Q ss_pred ecCCCCCCccCCCCCCCCCccEEEEecCchH
Q 007616 541 ELPRCPVLRSFPENVLPPSLVYLSIYLCPYL 571 (596)
Q Consensus 541 ~l~~c~~l~~lp~~~~~~~L~~L~i~~C~~L 571 (596)
++++ +.++.+|.. .+++|+.|++.++..|
T Consensus 211 ~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 211 DVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp ECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred ECCC-CccccCChh-HhccCceeeccCccCC
Confidence 9999 568889876 6789999999988764
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=5e-14 Score=136.79 Aligned_cols=181 Identities=26% Similarity=0.264 Sum_probs=133.5
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
.+|..+. +++++|++++|.++.+ |..+..+++|++|++++| .+..+|.. +.+++|++|++++|. +..+|..+..
T Consensus 24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~ 98 (290)
T 1p9a_G 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQT 98 (290)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTT
T ss_pred cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCc-CCcCchhhcc
Confidence 5666553 6888899999988866 457888889999999888 67777664 788889999999888 7888888888
Q ss_pred CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616 237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH 316 (596)
Q Consensus 237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 316 (596)
+++|++|++.++..... + ...+.++++|+.|+++.+.. .......+..+
T Consensus 99 l~~L~~L~l~~N~l~~l------~------------------------~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l 147 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSL------P------------------------LGALRGLGELQELYLKGNEL-KTLPPGLLTPT 147 (290)
T ss_dssp CTTCCEEECCSSCCCCC------C------------------------SSTTTTCTTCCEEECTTSCC-CCCCTTTTTTC
T ss_pred CCCCCEEECCCCcCccc------C------------------------HHHHcCCCCCCEEECCCCCC-CccChhhcccc
Confidence 88888887654433210 0 01245566777777776653 22233345667
Q ss_pred CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616 317 YGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 376 (596)
++|+.|++++|....+|..... .+++|+.|++++|... .+| .+..+++|+.|++++|+
T Consensus 148 ~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred cCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 8999999999998888875431 6889999999998844 555 67778899999999876
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=1.7e-17 Score=179.09 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=52.3
Q ss_pred ceeEEEEecccccccccccccccCccccc-ccCCCcEEeecCC-Cccc--cccccccCCcCcEEEccccccccc-----c
Q 007616 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIA-ELKHLRYLDFSHT-AIEV--LSESVSTLYNLQTLILEYCYRLKK-----L 206 (596)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~~~-~l~~L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~~~~~-----l 206 (596)
+++.+.+..+.+.. ..+..+. .+++|++|++++| .++. ++..+..+++|++|++++|. +.. +
T Consensus 106 ~L~~L~L~~~~~~~--------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l 176 (594)
T 2p1m_B 106 WLEEIRLKRMVVTD--------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWL 176 (594)
T ss_dssp TCCEEEEESCBCCH--------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGG
T ss_pred CCCeEEeeCcEEcH--------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHH
Confidence 55666665543322 2223332 4667777777766 4443 44444567777777777763 322 2
Q ss_pred CCcccCCCccceeecCCCC-cc--ccccccccCCcccCCCCcE
Q 007616 207 FPDIGNLVNLRHLKDSHSN-LL--EEMPLRIGKLTSLRTLAKF 246 (596)
Q Consensus 207 p~~i~~L~~L~~L~l~~~~-~l--~~lp~~l~~l~~L~~L~~~ 246 (596)
+.....+++|++|++++|. .+ ..++.-+.++++|++|++.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 2223355667777776664 01 1111112345666666653
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=2.4e-14 Score=140.41 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=125.9
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 214 (596)
.+++.+.+..+.+. .++. +..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|. ++.++
T Consensus 63 ~~L~~L~L~~n~i~---------~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~ 129 (308)
T 1h6u_A 63 NNLIGLELKDNQIT---------DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLS 129 (308)
T ss_dssp TTCCEEECCSSCCC---------CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCT
T ss_pred CCCCEEEccCCcCC---------CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCC
Confidence 45566666555443 4555 889999999999999999886 6899999999999999 7888875 99999
Q ss_pred ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL 294 (596)
Q Consensus 215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L 294 (596)
+|++|++++|. +..+|. ++.+++|++|++.++...... . +..+++|
T Consensus 130 ~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~---~-----------------------------l~~l~~L 175 (308)
T 1h6u_A 130 NLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLT---P-----------------------------LANLSKL 175 (308)
T ss_dssp TCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG---G-----------------------------GTTCTTC
T ss_pred CCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCCh---h-----------------------------hcCCCCC
Confidence 99999999998 788776 888999999987554332111 1 3445667
Q ss_pred ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCC
Q 007616 295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQ 354 (596)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 354 (596)
+.|+++.+...... .+..+++|+.|++++|....++. +. .+++|+.|++++|..
T Consensus 176 ~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 176 TTLKADDNKISDIS---PLASLPNLIEVHLKNNQISDVSP-LA--NTSNLFIVTLTNQTI 229 (308)
T ss_dssp CEEECCSSCCCCCG---GGGGCTTCCEEECTTSCCCBCGG-GT--TCTTCCEEEEEEEEE
T ss_pred CEEECCCCccCcCh---hhcCCCCCCEEEccCCccCcccc-cc--CCCCCCEEEccCCee
Confidence 77777666432221 25667888999999888777764 33 688899999998873
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=2e-16 Score=160.88 Aligned_cols=214 Identities=15% Similarity=0.089 Sum_probs=125.3
Q ss_pred cCcccccccCCCcEEeecCCCccc-----cccccccCCcCcEEEcccccccc----ccCCcc-------cCCCccceeec
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEV-----LSESVSTLYNLQTLILEYCYRLK----KLFPDI-------GNLVNLRHLKD 221 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~----~lp~~i-------~~L~~L~~L~l 221 (596)
.++..+..+++|++|++++|.+.. ++..+..+++|++|++++| .+. .+|..+ ..+++|++|++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 677788889999999999998873 4455778999999999987 333 344444 78899999999
Q ss_pred CCCCcccc-----ccccccCCcccCCCCcEEeccCCC--CCch-hccch---------hhccceEEEcCcCCCCCHhhHH
Q 007616 222 SHSNLLEE-----MPLRIGKLTSLRTLAKFVVGKGNC--SGLK-ELRSL---------MHLQEKLTISGLENVNDAEDAK 284 (596)
Q Consensus 222 ~~~~~l~~-----lp~~l~~l~~L~~L~~~~~~~~~~--~~l~-~l~~L---------~~L~~~l~i~~~~~~~~~~~~~ 284 (596)
++|. ++. +|..+.++++|++|++.++..... ..+. .+..+ +.|+ .+.+.+..-.......+
T Consensus 102 s~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 102 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR-SIICGRNRLENGSMKEW 179 (386)
T ss_dssp CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC-EEECCSSCCTGGGHHHH
T ss_pred CCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc-EEECCCCCCCcHHHHHH
Confidence 9998 554 777788899999998766544210 0011 12222 3444 45554422111111222
Q ss_pred HHhcCCccccccccccccCCcchh---hhh-ccCCCCCccEEEEeccCC-----CCCCCCCCCCCCCCccEEEEecCCCC
Q 007616 285 EAQLNGKKKLEALSPKWGNKIQTC---VFE-MLKPHYGLKELKVRGYGG-----TKFPAWLGQSSFENLVVLRFKNCNQC 355 (596)
Q Consensus 285 ~~~l~~~~~L~~L~l~~~~~~~~~---~~~-~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~ 355 (596)
...+..+++|+.|+++++...... ... .+..+++|+.|++++|.. ..+|..+. .+++|+.|++++|...
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTTCCCC
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc--cCCCcCEEECCCCCCc
Confidence 234455556666666655432211 122 445556666666666654 23344333 4556666666666532
Q ss_pred CC----CC-CC--CCCCccceeeccCcc
Q 007616 356 TT----LP-SV--GHLPSLKNLVIKGMA 376 (596)
Q Consensus 356 ~~----l~-~l--~~l~~L~~L~L~~~~ 376 (596)
.. ++ .+ +.+++|+.|++++|.
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 21 11 22 335666666666654
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=2.3e-14 Score=139.33 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=112.4
Q ss_pred ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 242 (596)
+..+++|++|++++|.+..++. ++.+++|++|++++| .+..++. ++++++|++|++++|. +..+|. ++.+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCE
Confidence 3566777788888877777753 777778888888877 6666665 7777788888888777 666554 777777777
Q ss_pred CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616 243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322 (596)
Q Consensus 243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 322 (596)
|++.++.... +. .+..+++|+.|+++.+..... ..+..+++|+.|
T Consensus 117 L~L~~n~i~~---~~-----------------------------~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L 161 (291)
T 1h6t_A 117 LSLEHNGISD---IN-----------------------------GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTL 161 (291)
T ss_dssp EECTTSCCCC---CG-----------------------------GGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEE
T ss_pred EECCCCcCCC---Ch-----------------------------hhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEE
Confidence 7654332211 11 123344555555555432221 345556778888
Q ss_pred EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCcc
Q 007616 323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~ 376 (596)
++++|....++. +. .+++|+.|++++|. ++.++.+..+++|+.|++++|.
T Consensus 162 ~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 162 SLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred EccCCccccchh-hc--CCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 888887776665 33 67788888888876 4556677788888888888764
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=7.5e-14 Score=134.40 Aligned_cols=199 Identities=19% Similarity=0.189 Sum_probs=147.6
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNL 213 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L 213 (596)
..++.+.+..+... .+ +.++.+++|++|++++|.++.++ .++.+++|++|++++| .+..+|.. ++++
T Consensus 41 ~~L~~L~l~~~~i~---------~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l 108 (272)
T 3rfs_A 41 NSIDQIIANNSDIK---------SV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKL 108 (272)
T ss_dssp TTCCEEECTTSCCC---------CC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTC
T ss_pred cceeeeeeCCCCcc---------cc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCC
Confidence 34556665554433 22 34788999999999999999875 6899999999999999 67777655 7899
Q ss_pred CccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcc
Q 007616 214 VNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKK 292 (596)
Q Consensus 214 ~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~ 292 (596)
++|++|++++|. +..+|.. ++.+++|++|++.++.... +. ...+..++
T Consensus 109 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~------------------------~~~~~~l~ 157 (272)
T 3rfs_A 109 TNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQS------LP------------------------KGVFDKLT 157 (272)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC------CC------------------------TTTTTTCT
T ss_pred cCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCc------cC------------------------HHHhccCc
Confidence 999999999999 7777765 7889999999875543321 10 01245667
Q ss_pred ccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEecCCCCCCCCCCCCCCccceee
Q 007616 293 KLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLV 371 (596)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~ 371 (596)
+|+.|+++.+.. .......+..+++|+.|++++|....++.. +. .+++|+.|++++|+.. +.+++|+.|+
T Consensus 158 ~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~------~~~~~l~~l~ 228 (272)
T 3rfs_A 158 NLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNPWD------CTCPGIRYLS 228 (272)
T ss_dssp TCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSCBC------CCTTTTHHHH
T ss_pred cCCEEECCCCCc-CccCHHHhcCCccCCEEECCCCcCCccCHHHHh--CCcCCCEEEccCCCcc------ccCcHHHHHH
Confidence 788888877753 233334467789999999999998877764 34 7899999999999643 5577889999
Q ss_pred ccCccCceEeCccc
Q 007616 372 IKGMAKVKSVGLEF 385 (596)
Q Consensus 372 L~~~~~l~~~~~~~ 385 (596)
+..+...+.++...
T Consensus 229 ~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 229 EWINKHSGVVRNSA 242 (272)
T ss_dssp HHHHHTGGGBBCTT
T ss_pred HHHHhCCCcccCcc
Confidence 88877666665543
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=4.3e-14 Score=128.96 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=104.0
Q ss_pred ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 242 (596)
.+.+++|++|++++|.++.+| .+..+++|++|++++| .+..++ .++.+++|++|++++|......|..++.+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 367889999999999999888 6889999999999999 666664 6888999999999999833346777888888877
Q ss_pred CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616 243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322 (596)
Q Consensus 243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 322 (596)
|++.++... ...+..+..+++|+.|
T Consensus 117 L~Ls~n~i~-------------------------------------------------------~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 117 LDISHSAHD-------------------------------------------------------DSILTKINTLPKVNSI 141 (197)
T ss_dssp EECCSSBCB-------------------------------------------------------GGGHHHHTTCSSCCEE
T ss_pred EEecCCccC-------------------------------------------------------cHhHHHHhhCCCCCEE
Confidence 765333211 1112223334556666
Q ss_pred EEeccC-CCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCcc
Q 007616 323 KVRGYG-GTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 323 ~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~ 376 (596)
++++|. ...+| .+. .+++|+.|++++|. ++.++.+..+++|+.|++++|.
T Consensus 142 ~L~~n~~i~~~~-~l~--~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 142 DLSYNGAITDIM-PLK--TLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSCTBCCCCG-GGG--GCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred EccCCCCccccH-hhc--CCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 666655 55554 233 56677777777766 3445566677777777777654
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=3.7e-15 Score=148.56 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=101.4
Q ss_pred CcccccccCCCcEEeecCCCccc--cccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccc--ccccc
Q 007616 159 LPNDIAELKHLRYLDFSHTAIEV--LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEE--MPLRI 234 (596)
Q Consensus 159 lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~l 234 (596)
.+..+..+++|++|++++|.++. +|..+..+++|++|++++|......|..++.+++|++|++++|..++. +|..+
T Consensus 85 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 85 PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 34446678999999999998873 788889999999999999954446777888999999999999954653 66668
Q ss_pred cCCcccCCCCcEEe-ccCCCCCchhccchh-hccceEEEcCcC-CCCCHhhHHHHhcCCccccccccccccCCcchhhhh
Q 007616 235 GKLTSLRTLAKFVV-GKGNCSGLKELRSLM-HLQEKLTISGLE-NVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE 311 (596)
Q Consensus 235 ~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~-~L~~~l~i~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 311 (596)
.++++|++|++.++ ..........+..++ +|+ .+.+.++. ... .......+..+++|+.|+++++.......+.
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~-~L~l~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT-QLNLSGYRKNLQ--KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC-EEECCSCGGGSC--HHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC-EEEeCCCcccCC--HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 88899999887655 332111111223333 343 44444321 111 1222233344455555555544422233333
Q ss_pred ccCCCCCccEEEEecc
Q 007616 312 MLKPHYGLKELKVRGY 327 (596)
Q Consensus 312 ~l~~~~~L~~L~l~~~ 327 (596)
.+..+++|+.|++++|
T Consensus 242 ~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGGCTTCCEEECTTC
T ss_pred HHhCCCCCCEeeCCCC
Confidence 4444455555555544
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=1e-13 Score=147.90 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=109.4
Q ss_pred ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 242 (596)
+..+++|+.|++++|.+..+| .++.+++|++|+|++| .+..+|. +..+++|+.|++++|. +..+| .+..+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence 356677777777777777765 4677777777777777 5666655 7777777777777776 66655 4667777777
Q ss_pred CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616 243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322 (596)
Q Consensus 243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 322 (596)
|++.++.... +.. +..+++|+.|+++.+..... ..+..+++|+.|
T Consensus 114 L~Ls~N~l~~---l~~-----------------------------l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L 158 (605)
T 1m9s_A 114 LSLEHNGISD---ING-----------------------------LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTL 158 (605)
T ss_dssp EECTTSCCCC---CGG-----------------------------GGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEE
T ss_pred EEecCCCCCC---Ccc-----------------------------ccCCCccCEEECCCCccCCc---hhhcccCCCCEE
Confidence 7654332211 111 33344555555555442221 345566777777
Q ss_pred EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCcc
Q 007616 323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~ 376 (596)
++++|.+..++. +. .+++|+.|+|++|. +..++.++.+++|+.|+|++|.
T Consensus 159 ~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 159 SLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred ECcCCcCCCchh-hc--cCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 777777666655 33 67788888888776 4455677778888888887764
No 94
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.46 E-value=1.1e-14 Score=154.29 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=82.6
Q ss_pred hhhHHHHHHhhhhhhhhHHHHHHh-----------HhccCCCCcccCHHhHHHHHHHc--CCCCCCCCCCCHHHHHHHHH
Q 007616 15 FKGFRGALGVSYYCLLSYVKRCFA-----------YCSFLPKGYRFDERQIVLLWMAE--GLLQHETYGKQMEEFGRKSF 81 (596)
Q Consensus 15 ~~~i~~~L~lSY~~L~~~lk~cfl-----------~~a~fpe~~~i~~~~Li~~wi~~--g~~~~~~~~~~~~~~~~~~~ 81 (596)
.++|.++|++||++||.++|.||+ |||+||+|+.|+ +++|+|+ ||+.........+++++ ++
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 356788999999999999999999 999999999998 8999999 99987544667788888 99
Q ss_pred HHHHhCCccceecC-CCCeEEEcchHHHHHHHhhccceE
Q 007616 82 QGLHSRSFFQQSKI-DASRFLMHDLIHDLACWASGEICW 119 (596)
Q Consensus 82 ~~L~~~~Ll~~~~~-~~~~~~mhd~i~~l~~~~~~~~~~ 119 (596)
++|+++||++.... ...+|+|||+||++|++++++++.
T Consensus 435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999998753 346899999999999999887664
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=1e-12 Score=124.82 Aligned_cols=158 Identities=23% Similarity=0.271 Sum_probs=92.0
Q ss_pred cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. ++++.|++++|.++.++. .++.+++|++|++++| .+..++. .+..+++|++|++++|. +..+|.. +
T Consensus 28 ~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 103 (251)
T 3m19_A 28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVF 103 (251)
T ss_dssp SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc-ccccChhHh
Confidence 4555543 467777777777775543 5677777777777777 4444443 36777777777777777 5555543 4
Q ss_pred cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616 235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK 314 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (596)
+.+++|++|++.++... ......+.
T Consensus 104 ~~l~~L~~L~L~~N~l~-------------------------------------------------------~~~~~~~~ 128 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLK-------------------------------------------------------SLPSGVFD 128 (251)
T ss_dssp TTCTTCCEEECCSSCCC-------------------------------------------------------CCCTTTTT
T ss_pred cccCCCCEEEcCCCcCC-------------------------------------------------------CcChhHhc
Confidence 55666666554322110 00011123
Q ss_pred CCCCccEEEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616 315 PHYGLKELKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 376 (596)
.+++|+.|++++|....+|. .+. .+++|+.|++++|......+ .++.+++|+.|++++|+
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 34566666666666665554 233 56677777777766433222 45666777777776654
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=1.6e-15 Score=154.34 Aligned_cols=250 Identities=15% Similarity=0.095 Sum_probs=149.8
Q ss_pred CCCcEEeecCCCccccccccccCCcCcEEEccccccccc-----cCCcccCCCccceeecCCCCccc----cccccc---
Q 007616 167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKK-----LFPDIGNLVNLRHLKDSHSNLLE----EMPLRI--- 234 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~~l~----~lp~~l--- 234 (596)
+.|++..+....+..++..+..+++|++|++++| .+.. ++..+..+++|++|++++|. +. .+|.++
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l 86 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLL 86 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHH
Confidence 3566666666677788888999999999999999 4443 44557889999999999974 33 345444
Q ss_pred ----cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcch---
Q 007616 235 ----GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT--- 307 (596)
Q Consensus 235 ----~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--- 307 (596)
.++++|++|++.++..... . ...+...+..+++|+.|+++.+.....
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~-~-------------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPT-A-------------------------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTT-T-------------------------HHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred HHHHhhCCcccEEECCCCcCCHH-H-------------------------HHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 6778888887655543221 0 112223344555666666665543111
Q ss_pred hhhhccCCC---------CCccEEEEeccCCC--CCCC---CCCCCCCCCccEEEEecCCCCC-----CCC-CCCCCCcc
Q 007616 308 CVFEMLKPH---------YGLKELKVRGYGGT--KFPA---WLGQSSFENLVVLRFKNCNQCT-----TLP-SVGHLPSL 367 (596)
Q Consensus 308 ~~~~~l~~~---------~~L~~L~l~~~~~~--~~~~---~~~~~~~~~L~~L~l~~~~~~~-----~l~-~l~~l~~L 367 (596)
.....+..+ ++|+.|++++|... .++. .+. .+++|+.|++++|.... .++ .+..+++|
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ--SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH--HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH--hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 111112222 67777777776653 2221 122 45677777777775331 233 56677778
Q ss_pred ceeeccCccCc----eEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC-----CCCCCCCEEEE
Q 007616 368 KNLVIKGMAKV----KSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-----QRFSSLERIVI 438 (596)
Q Consensus 368 ~~L~L~~~~~l----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p-----~~l~~L~~L~l 438 (596)
+.|++++|... ..++..+.. +++|+.|+++++. +.... . . .+| ..+++|+.|++
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~------~~~L~~L~L~~n~-i~~~~------~---~-~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKS------WPNLRELGLNDCL-LSARG------A---A-AVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGG------CTTCCEEECTTCC-CCHHH------H---H-HHHHHHHTCSSCCCCEEEC
T ss_pred cEEECcCCCCCcHHHHHHHHHHcc------CCCcCEEECCCCC-Cchhh------H---H-HHHHHHhhccCCCeEEEEC
Confidence 88888776531 333333322 6778877777642 11100 0 0 012 12788999999
Q ss_pred eeccC-------hhccC-CCCCCcceEEecCCc
Q 007616 439 TSCEQ-------LLVSY-TALPPLCELEIDGFS 463 (596)
Q Consensus 439 ~~c~~-------l~~~~-~~l~~L~~L~l~~c~ 463 (596)
++|.- ++..+ .++++|++|++++|.
T Consensus 282 ~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 88862 33344 458999999999997
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=2e-13 Score=134.20 Aligned_cols=101 Identities=18% Similarity=0.108 Sum_probs=57.0
Q ss_pred eeEEEEecccccccccccccccCcccc--cccCCCcEEeecCCCcccc-c----cccccCCcCcEEEccccccccccC-C
Q 007616 137 LRHLSYLTSRFDGIKRFEGLHELPNDI--AELKHLRYLDFSHTAIEVL-S----ESVSTLYNLQTLILEYCYRLKKLF-P 208 (596)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~l~~lp~~~--~~l~~L~~L~L~~~~i~~l-p----~~i~~l~~L~~L~L~~~~~~~~lp-~ 208 (596)
++.+.+..+.+.+ ..|..+ ..+++|++|++++|.++.. | ..+..+++|++|++++| .+..+| .
T Consensus 93 L~~L~l~~n~l~~--------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~ 163 (310)
T 4glp_A 93 LKELTLEDLKITG--------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCE 163 (310)
T ss_dssp CCEEEEESCCCBS--------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTT
T ss_pred eeEEEeeCCEecc--------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHH
Confidence 5555555554433 445555 6667777777777766632 1 23345667777777777 344333 4
Q ss_pred cccCCCccceeecCCCCcccc--cccc--ccCCcccCCCCcE
Q 007616 209 DIGNLVNLRHLKDSHSNLLEE--MPLR--IGKLTSLRTLAKF 246 (596)
Q Consensus 209 ~i~~L~~L~~L~l~~~~~l~~--lp~~--l~~l~~L~~L~~~ 246 (596)
.++.+++|++|++++|...+. ++.. ++.+++|++|++.
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 566777777777777762221 2222 3566666666653
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=9.9e-13 Score=127.69 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=127.1
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 214 (596)
.+++.+.+..+... .+| .+..+++|++|++++|.++.++. ++.+++|++|++++| .+..+|. ++.++
T Consensus 46 ~~L~~L~l~~~~i~---------~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~ 112 (291)
T 1h6t_A 46 NSIDQIIANNSDIK---------SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLK 112 (291)
T ss_dssp HTCCEEECTTSCCC---------CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCT
T ss_pred CcccEEEccCCCcc---------cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCC
Confidence 34566666555443 343 37889999999999999999887 999999999999999 7777765 99999
Q ss_pred ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL 294 (596)
Q Consensus 215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L 294 (596)
+|++|++++|. +..++ .+..+++|++|++.++..... . .+..+++|
T Consensus 113 ~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~---~-----------------------------~l~~l~~L 158 (291)
T 1h6t_A 113 KLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI---T-----------------------------VLSRLTKL 158 (291)
T ss_dssp TCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC---G-----------------------------GGGGCTTC
T ss_pred CCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc---h-----------------------------hhccCCCC
Confidence 99999999998 77774 588899999998755433211 1 24456677
Q ss_pred ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCC
Q 007616 295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQ 354 (596)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 354 (596)
+.|+++.+...... .+..+++|+.|++++|....++. +. .+++|+.|++++|+.
T Consensus 159 ~~L~L~~N~l~~~~---~l~~l~~L~~L~L~~N~i~~l~~-l~--~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 159 DTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQEC 212 (291)
T ss_dssp SEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCGG-GT--TCTTCSEEEEEEEEE
T ss_pred CEEEccCCccccch---hhcCCCccCEEECCCCcCCCChh-hc--cCCCCCEEECcCCcc
Confidence 77777776532221 26778899999999998888765 34 688999999998873
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=2.2e-12 Score=122.50 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=116.1
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DI 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i 210 (596)
++..++.+.+..+.+.. ..|..+..+++|++|++++|.++.++. .+..+++|++|++++| .+..+|. .+
T Consensus 33 ~~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 103 (251)
T 3m19_A 33 IPADTEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVF 103 (251)
T ss_dssp CCTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred CCCCCCEEEccCCCcCc--------cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHh
Confidence 44567777777666554 335568999999999999999997754 5799999999999999 6777764 47
Q ss_pred cCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616 211 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 289 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 289 (596)
+.+++|++|++++|. ++.+|.. +..+++|++|++.++... .+
T Consensus 104 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~------~~------------------------------ 146 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ------SI------------------------------ 146 (251)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC------CC------------------------------
T ss_pred cccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCC------cc------------------------------
Confidence 899999999999998 8888876 577888888875433211 00
Q ss_pred CccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCC
Q 007616 290 GKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQC 355 (596)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 355 (596)
....+..+++|+.|++++|....++. .+. .+++|+.|++++|+..
T Consensus 147 -------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 147 -------------------PAGAFDKLTNLQTLSLSTNQLQSVPHGAFD--RLGKLQTITLFGNQFD 192 (251)
T ss_dssp -------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCCBC
T ss_pred -------------------CHHHcCcCcCCCEEECCCCcCCccCHHHHh--CCCCCCEEEeeCCcee
Confidence 01123345678888888888777765 333 6789999999988744
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=1.2e-12 Score=125.12 Aligned_cols=147 Identities=19% Similarity=0.211 Sum_probs=83.4
Q ss_pred ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 242 (596)
+..+++|++|++++|.++.+| .++.+++|++|++++| .+..+|. ++++++|++|++++|. ++.+|... . ++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNGIP-S-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCC-C-SSCCE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCccc-c-CcccE
Confidence 455666666666666666655 4566666666666666 5555554 6666666666666665 55554322 1 44444
Q ss_pred CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616 243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322 (596)
Q Consensus 243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 322 (596)
|++ +.+.... ...+..+++|+.|
T Consensus 111 L~L------------------------------------------------------~~N~l~~---~~~l~~l~~L~~L 133 (263)
T 1xeu_A 111 LFL------------------------------------------------------DNNELRD---TDSLIHLKNLEIL 133 (263)
T ss_dssp EEC------------------------------------------------------CSSCCSB---SGGGTTCTTCCEE
T ss_pred EEc------------------------------------------------------cCCccCC---ChhhcCcccccEE
Confidence 443 2222111 1123445566666
Q ss_pred EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCcc
Q 007616 323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~ 376 (596)
++++|....++ .+. .+++|+.|++++|.. +.++.++.+++|+.|++++|.
T Consensus 134 ~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 134 SIRNNKLKSIV-MLG--FLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECTTSCCCBCG-GGG--GCTTCCEEECTTSCC-CBCTTSTTCCCCCEEEEEEEE
T ss_pred ECCCCcCCCCh-HHc--cCCCCCEEECCCCcC-cchHHhccCCCCCEEeCCCCc
Confidence 66666665554 233 566777777777663 333666677777777777654
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=3.8e-14 Score=142.60 Aligned_cols=213 Identities=12% Similarity=0.035 Sum_probs=114.4
Q ss_pred CcccccccCCCcEEeecCCCccccc-----cccccCC-cCcEEEcccccccccc-CCcccCC-----CccceeecCCCCc
Q 007616 159 LPNDIAELKHLRYLDFSHTAIEVLS-----ESVSTLY-NLQTLILEYCYRLKKL-FPDIGNL-----VNLRHLKDSHSNL 226 (596)
Q Consensus 159 lp~~~~~l~~L~~L~L~~~~i~~lp-----~~i~~l~-~L~~L~L~~~~~~~~l-p~~i~~L-----~~L~~L~l~~~~~ 226 (596)
+|..+...++|++|++++|.++..+ ..+..++ +|++|++++| .++.. +..+..+ ++|++|++++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 3444445555788888877777554 4566677 7888888777 44433 3444443 777888887777
Q ss_pred ccccc-cc----ccCC-cccCCCCcEEeccCCCCCchhc----cch-hhccceEEEcCcCCCCCHhhHHHHhcCCcc-cc
Q 007616 227 LEEMP-LR----IGKL-TSLRTLAKFVVGKGNCSGLKEL----RSL-MHLQEKLTISGLENVNDAEDAKEAQLNGKK-KL 294 (596)
Q Consensus 227 l~~lp-~~----l~~l-~~L~~L~~~~~~~~~~~~l~~l----~~L-~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~-~L 294 (596)
++..+ .. +..+ ++|++|++.++.... .....+ ..+ +.|+ .+.+.+..-.......+...+...+ +|
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASIT-SLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCC-EEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCcee-EEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 44433 22 3333 677777766555422 111111 111 2444 5555543221111223333444444 77
Q ss_pred ccccccccCCcchh---hhhccCCC-CCccEEEEeccCCCC-----CCCCCCCCCCCCccEEEEecCCCCCCCC-----C
Q 007616 295 EALSPKWGNKIQTC---VFEMLKPH-YGLKELKVRGYGGTK-----FPAWLGQSSFENLVVLRFKNCNQCTTLP-----S 360 (596)
Q Consensus 295 ~~L~l~~~~~~~~~---~~~~l~~~-~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~l~-----~ 360 (596)
+.|+++++...... ....+... ++|+.|++++|.... ++..+.. ..++|++|++++|.....-+ .
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS-IPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-SCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-CCCCceEEECcCCCCCcHHHHHHHHH
Confidence 77777776532111 12233344 477777777776544 2322220 13477777777776332111 2
Q ss_pred CCCCCccceeeccCcc
Q 007616 361 VGHLPSLKNLVIKGMA 376 (596)
Q Consensus 361 l~~l~~L~~L~L~~~~ 376 (596)
+..+++|+.|++++|.
T Consensus 249 ~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTTTCSEEEEEHHH
T ss_pred HhcCCCccEEEeccCC
Confidence 4566777777777764
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=7.1e-14 Score=140.62 Aligned_cols=249 Identities=12% Similarity=0.071 Sum_probs=149.1
Q ss_pred EEeecCCCcccc-ccccccCCcCcEEEccccccccccC-----CcccCCC-ccceeecCCCCccccc-cccccCC-----
Q 007616 171 YLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-----PDIGNLV-NLRHLKDSHSNLLEEM-PLRIGKL----- 237 (596)
Q Consensus 171 ~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-----~~i~~L~-~L~~L~l~~~~~l~~l-p~~l~~l----- 237 (596)
++++++|.++.. |..+....+|++|++++| .++..+ ..+.+++ +|++|++++|. ++.. +..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccC
Confidence 468889999854 555566667999999999 676665 4577888 99999999998 5554 4445554
Q ss_pred cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCc-cccccccccccCCcchh---hhhcc
Q 007616 238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK-KKLEALSPKWGNKIQTC---VFEML 313 (596)
Q Consensus 238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~---~~~~l 313 (596)
++|++|++.++..... . ...+...+..+ ++|+.|+++++...... ....+
T Consensus 80 ~~L~~L~Ls~n~l~~~-~-------------------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 133 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYK-S-------------------------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133 (362)
T ss_dssp TTCCEEECCSSCGGGS-C-------------------------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred CCccEEECcCCcCChH-H-------------------------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH
Confidence 7888888755543211 1 11122223334 56777777766532111 11223
Q ss_pred CC-CCCccEEEEeccCCCC-----CCCCCCCCCC-CCccEEEEecCCCCCCCC-----CCCCC-CccceeeccCccCceE
Q 007616 314 KP-HYGLKELKVRGYGGTK-----FPAWLGQSSF-ENLVVLRFKNCNQCTTLP-----SVGHL-PSLKNLVIKGMAKVKS 380 (596)
Q Consensus 314 ~~-~~~L~~L~l~~~~~~~-----~~~~~~~~~~-~~L~~L~l~~~~~~~~l~-----~l~~l-~~L~~L~L~~~~~l~~ 380 (596)
.. +++|+.|++++|.... ++..+. .+ ++|++|++++|......+ .+..+ ++|+.|++++|. ++.
T Consensus 134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~ 210 (362)
T 3goz_A 134 SNLPASITSLNLRGNDLGIKSSDELIQILA--AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGL 210 (362)
T ss_dssp TTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGG
T ss_pred HhCCCceeEEEccCCcCCHHHHHHHHHHHh--cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CCh
Confidence 33 3578888888776542 222222 23 378888888876433222 23344 488888888875 322
Q ss_pred -----eCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeecc----------Chh
Q 007616 381 -----VGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCE----------QLL 445 (596)
Q Consensus 381 -----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~----------~l~ 445 (596)
++..+.. ..++|+.|+++++. +.... ...+. .....+++|+.|++++|. .+.
T Consensus 211 ~~~~~l~~~l~~-----~~~~L~~L~Ls~N~-l~~~~------~~~l~-~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 211 KSYAELAYIFSS-----IPNHVVSLNLCLNC-LHGPS------LENLK-LLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp SCHHHHHHHHHH-----SCTTCCEEECCSSC-CCCCC------HHHHH-HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHhc-----CCCCceEEECcCCC-CCcHH------HHHHH-HHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 1111111 02478888888732 11110 00000 112457889999999986 124
Q ss_pred ccCCCCCCcceEEecCCc
Q 007616 446 VSYTALPPLCELEIDGFS 463 (596)
Q Consensus 446 ~~~~~l~~L~~L~l~~c~ 463 (596)
..++.+++|++|++++|.
T Consensus 278 ~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTSTTCCEEEEECTTSCB
T ss_pred HHhccCCceEEEecCCCc
Confidence 567889999999999987
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=4.4e-12 Score=116.68 Aligned_cols=160 Identities=21% Similarity=0.207 Sum_probs=112.8
Q ss_pred cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+ .++|++|++++|.++.+|. .++.+++|++|++++| .+..+|.. ++.+++|++|++++|. +..+|.. +
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 96 (208)
T 2o6s_A 21 SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF 96 (208)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHh
Confidence 556544 4589999999999998775 4688999999999998 67777765 6889999999999998 7777765 5
Q ss_pred cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616 235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK 314 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (596)
+++++|++|++.++... .+ ....+.
T Consensus 97 ~~l~~L~~L~L~~N~l~------~~-------------------------------------------------~~~~~~ 121 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQ------SL-------------------------------------------------PDGVFD 121 (208)
T ss_dssp TTCTTCCEEECCSSCCC------CC-------------------------------------------------CTTTTT
T ss_pred cCccCCCEEEcCCCcCc------cc-------------------------------------------------CHhHhc
Confidence 77777777765332211 00 011123
Q ss_pred CCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCcc
Q 007616 315 PHYGLKELKVRGYGGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLE 384 (596)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 384 (596)
.+++|+.|++++|....++.. +. .+++|+.|++++|. ..+.+++|+.|+++.+...+.++..
T Consensus 122 ~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~------~~~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 122 KLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNP------WDCTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCC------BCCCTTTTHHHHHHHHHCTTTBBCT
T ss_pred cCCcCCEEECCCCccceeCHHHhc--cCCCccEEEecCCC------eecCCCCHHHHHHHHHhCCceeecc
Confidence 456777778877777666654 33 67888888888885 3345677888888877655555543
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=3.2e-12 Score=134.78 Aligned_cols=167 Identities=19% Similarity=0.191 Sum_probs=102.0
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l 237 (596)
.+|..+ +++|++|++++|.|+.+| +.+++|++|++++| .+..+|. +++ +|++|++++|. ++.+|. .+
T Consensus 73 ~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l 139 (571)
T 3cvr_A 73 SLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LP 139 (571)
T ss_dssp CCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CC
T ss_pred ccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCc-CCCCCC---cC
Confidence 345544 256777777777777776 34677777777777 5666666 554 77777777776 666666 45
Q ss_pred cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616 238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY 317 (596)
Q Consensus 238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (596)
++|++|++.++.... ++. .+++|+.|+++.|.... .+. +. +
T Consensus 140 ~~L~~L~Ls~N~l~~------lp~----------------------------~l~~L~~L~Ls~N~L~~--lp~-l~--~ 180 (571)
T 3cvr_A 140 ALLEYINADNNQLTM------LPE----------------------------LPTSLEVLSVRNNQLTF--LPE-LP--E 180 (571)
T ss_dssp TTCCEEECCSSCCSC------CCC----------------------------CCTTCCEEECCSSCCSC--CCC-CC--T
T ss_pred ccccEEeCCCCccCc------CCC----------------------------cCCCcCEEECCCCCCCC--cch-hh--C
Confidence 666666654332211 100 23466667776664322 222 32 6
Q ss_pred CccEEEEeccCCCCCCCCCCCCCCCCc-------cEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeC
Q 007616 318 GLKELKVRGYGGTKFPAWLGQSSFENL-------VVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVG 382 (596)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~ 382 (596)
+|+.|++++|.+..+|. +. . +| +.|++++|. ++.+| .+..+++|+.|++++|...+.++
T Consensus 181 ~L~~L~Ls~N~L~~lp~-~~--~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 181 SLEALDVSTNLLESLPA-VP--V--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp TCCEEECCSSCCSSCCC-CC------------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CCCEEECcCCCCCchhh-HH--H--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 78888888888777776 43 1 55 888888876 44566 46668888888888776444443
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=9.7e-13 Score=125.69 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=125.7
Q ss_pred ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616 165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 244 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 244 (596)
.+.++..++++++.++.++ .+..+++|++|++++| .+..+| .++.+++|++|++++|. +..+|. ++++++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence 5777888999999999888 6889999999999999 888887 69999999999999998 888877 88888888887
Q ss_pred cEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEE
Q 007616 245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV 324 (596)
Q Consensus 245 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 324 (596)
+.++.... + ..+.. ++|+.|++
T Consensus 92 L~~N~l~~------l---------------------------------------------------~~~~~-~~L~~L~L 113 (263)
T 1xeu_A 92 VNRNRLKN------L---------------------------------------------------NGIPS-ACLSRLFL 113 (263)
T ss_dssp CCSSCCSC------C---------------------------------------------------TTCCC-SSCCEEEC
T ss_pred CCCCccCC------c---------------------------------------------------Ccccc-CcccEEEc
Confidence 54332110 0 00111 57999999
Q ss_pred eccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616 325 RGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED 404 (596)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 404 (596)
++|....++. +. .+++|+.|++++|. ++.++.++.+++|+.|++++|. +..+ ..+ ..+++|+.|++++
T Consensus 114 ~~N~l~~~~~-l~--~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~-i~~~-~~l------~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 114 DNNELRDTDS-LI--HLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNE-ITNT-GGL------TRLKKVNWIDLTG 181 (263)
T ss_dssp CSSCCSBSGG-GT--TCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSC-CCBC-TTS------TTCCCCCEEEEEE
T ss_pred cCCccCCChh-hc--CcccccEEECCCCc-CCCChHHccCCCCCEEECCCCc-Ccch-HHh------ccCCCCCEEeCCC
Confidence 9998877764 44 68899999999987 5566778889999999999875 3333 112 2266777776665
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=3.8e-12 Score=135.69 Aligned_cols=154 Identities=20% Similarity=0.188 Sum_probs=118.5
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l 237 (596)
.+| .+..+++|+.|+|++|.+..+|+ +..+++|++|+|++| .+..+| .++.+++|++|++++|. +..+| .+..+
T Consensus 57 ~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l 130 (605)
T 1m9s_A 57 SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHL 130 (605)
T ss_dssp CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGC
T ss_pred CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCC
Confidence 344 57899999999999999999887 999999999999999 787776 69999999999999999 77764 58899
Q ss_pred cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616 238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY 317 (596)
Q Consensus 238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (596)
++|+.|++.++..... . .+..+++|+.|+++.+...... + +..++
T Consensus 131 ~~L~~L~Ls~N~l~~l---~-----------------------------~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~ 175 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI---T-----------------------------VLSRLTKLDTLSLEDNQISDIV-P--LAGLT 175 (605)
T ss_dssp TTCSEEECCSSCCCCC---G-----------------------------GGGSCTTCSEEECCSSCCCCCG-G--GTTCT
T ss_pred CccCEEECCCCccCCc---h-----------------------------hhcccCCCCEEECcCCcCCCch-h--hccCC
Confidence 9999998755433211 1 2445667777777766532221 1 66778
Q ss_pred CccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCC
Q 007616 318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQC 355 (596)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 355 (596)
+|+.|++++|.+..+|. +. .+++|+.|++++|...
T Consensus 176 ~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 176 KLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQECL 210 (605)
T ss_dssp TCCEEECCSSCCCBCGG-GT--TCTTCSEEECCSEEEE
T ss_pred CCCEEECcCCCCCCChH-Hc--cCCCCCEEEccCCcCc
Confidence 88888888888777654 33 6788888888888743
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=1.3e-11 Score=112.31 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=82.8
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 214 (596)
.+++.+.+..+.+. .+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.++
T Consensus 44 ~~L~~L~l~~n~i~---------~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANINVT---------DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HTCCEEEEESSCCS---------CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred CCccEEeccCCCcc---------ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 45677777765444 456 5888999999999999887765 688999999999999944445788899999
Q ss_pred ccceeecCCCCccccccccccCCcccCCCCcEEe
Q 007616 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVV 248 (596)
Q Consensus 215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~ 248 (596)
+|++|++++|......|..++.+++|++|++.++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 9999999999944457777888999988876443
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=1.6e-11 Score=112.80 Aligned_cols=161 Identities=19% Similarity=0.111 Sum_probs=115.8
Q ss_pred cEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEE
Q 007616 170 RYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV 247 (596)
Q Consensus 170 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~ 247 (596)
+.++.+++.++.+|..+ .++|++|++++| .+..+|.. ++++++|++|++++|. ++.+|.. +..+++|++|++.+
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCC
Confidence 56788888899888765 469999999999 67777764 7899999999999998 7777765 57778888776533
Q ss_pred eccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEecc
Q 007616 248 VGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGY 327 (596)
Q Consensus 248 ~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 327 (596)
+... . .....+..+++|+.|++++|
T Consensus 86 n~l~------~-------------------------------------------------~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 86 NQLQ------S-------------------------------------------------LPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SCCC------C-------------------------------------------------CCTTTTTTCTTCCEEECCSS
T ss_pred CcCC------c-------------------------------------------------cCHhHhcCccCCCEEEcCCC
Confidence 2211 0 00112344577888888888
Q ss_pred CCCCCCCC-CCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616 328 GGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED 404 (596)
Q Consensus 328 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 404 (596)
....++.. +. .+++|+.|++++|...+..+ .++.+++|+.|++++|+.. + .+++|+.|.++.
T Consensus 111 ~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~-----~~~~l~~L~~~~ 174 (208)
T 2o6s_A 111 QLQSLPDGVFD--KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------C-----TCPGIRYLSEWI 174 (208)
T ss_dssp CCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------C-----CTTTTHHHHHHH
T ss_pred cCcccCHhHhc--cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------c-----CCCCHHHHHHHH
Confidence 87777664 33 68899999999987443333 3778999999999987422 1 166777776665
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.28 E-value=2e-11 Score=113.09 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=62.6
Q ss_pred cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. ++|+.|++++|.|+.+|. .+..+++|++|++++| .+..+ |..+.++++|++|++++|. +..+|.+ +
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f 100 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHc
Confidence 5666554 578888888888887765 6788888888888888 55555 6678888888888888888 7777765 4
Q ss_pred cCCcccCCCCc
Q 007616 235 GKLTSLRTLAK 245 (596)
Q Consensus 235 ~~l~~L~~L~~ 245 (596)
..+++|++|++
T Consensus 101 ~~l~~L~~L~L 111 (220)
T 2v9t_B 101 EGLFSLQLLLL 111 (220)
T ss_dssp TTCTTCCEEEC
T ss_pred cCCCCCCEEEC
Confidence 55666666654
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=2.7e-11 Score=113.10 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=44.3
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCccccccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPL 232 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~ 232 (596)
.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++| .+..+|.. ++.+++|++|++++|. ++.+|.
T Consensus 33 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~ 105 (229)
T 3e6j_A 33 SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPS 105 (229)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc-CCccCh
Confidence 4555443 5677777777777655 455666777777777776 55666543 4666777777777666 555443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=2.2e-11 Score=112.89 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=46.3
Q ss_pred cCcccccccCCCcEEeecCCCccccc--cccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLS--ESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR- 233 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~- 233 (596)
.+|..+. ..+++|++++|.++.++ ..++.+++|++|++++| .+..++. .++++++|++|++++|. +..+|.+
T Consensus 25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 100 (220)
T 2v70_A 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQHKM 100 (220)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGG
T ss_pred cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCHhH
Confidence 3454432 24566666666666553 23566666666666666 4555543 46666666666666666 4444433
Q ss_pred ccCCcccCCCC
Q 007616 234 IGKLTSLRTLA 244 (596)
Q Consensus 234 l~~l~~L~~L~ 244 (596)
++.+++|++|+
T Consensus 101 ~~~l~~L~~L~ 111 (220)
T 2v70_A 101 FKGLESLKTLM 111 (220)
T ss_dssp GTTCSSCCEEE
T ss_pred hcCCcCCCEEE
Confidence 44444444443
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=8.6e-14 Score=147.53 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=62.9
Q ss_pred ccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeec
Q 007616 293 KLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVI 372 (596)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L 372 (596)
.|+.|+++.+.... .+ .+..+++|+.|++++|.+..+|..++ .+++|+.|++++|.. +.+|.++.+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~--lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~l-~~lp~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLRALPPALA--ALRCLEVLQASDNAL-ENVDGVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCCCCCGGGG--GCTTCCEEECCSSCC-CCCGGGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC--Cc-CccccccCcEeecCcccccccchhhh--cCCCCCEEECCCCCC-CCCcccCCCCCCcEEEC
Confidence 36667776664322 22 25666777777777777777776665 677777777777763 34667777777777777
Q ss_pred cCccCceEe--CccccCCCCCCCCCCcceeeccc
Q 007616 373 KGMAKVKSV--GLEFCGNYCSEPFPSLETLCFED 404 (596)
Q Consensus 373 ~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~ 404 (596)
++|. +..+ +..+.. +++|+.|++++
T Consensus 516 s~N~-l~~~~~p~~l~~------l~~L~~L~L~~ 542 (567)
T 1dce_A 516 CNNR-LQQSAAIQPLVS------CPRLVLLNLQG 542 (567)
T ss_dssp CSSC-CCSSSTTGGGGG------CTTCCEEECTT
T ss_pred CCCC-CCCCCCcHHHhc------CCCCCEEEecC
Confidence 7754 3333 333333 66677666665
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=3.7e-11 Score=111.36 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=99.1
Q ss_pred cEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCccccc-cccccCCcccCCCCcEE
Q 007616 170 RYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFV 247 (596)
Q Consensus 170 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~~~~ 247 (596)
+.++++++.++.+|..+. ++|+.|++++| .+..+|. .+..+++|++|++++|. +..+ |..+..+++|++|++.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCC
Confidence 678999999999998765 79999999999 7777765 68999999999999999 6665 66688888888887643
Q ss_pred eccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEecc
Q 007616 248 VGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGY 327 (596)
Q Consensus 248 ~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 327 (596)
+... .++ ...+..+++|+.|++++|
T Consensus 90 N~l~------~l~-------------------------------------------------~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 90 NKIT------ELP-------------------------------------------------KSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp SCCC------CCC-------------------------------------------------TTTTTTCTTCCEEECCSS
T ss_pred CcCC------ccC-------------------------------------------------HhHccCCCCCCEEECCCC
Confidence 3221 000 011223455666666666
Q ss_pred CCCCCC-CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616 328 GGTKFP-AWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 328 ~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 376 (596)
.+..++ ..+. .+++|+.|++++|...+..+ .++.+++|+.|++++|+
T Consensus 115 ~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 115 KINCLRVDAFQ--DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEeCHHHcC--CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 655553 2333 56677777777766433322 35666777777777654
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=1.7e-11 Score=123.00 Aligned_cols=159 Identities=21% Similarity=0.274 Sum_probs=107.3
Q ss_pred cCcccccccCCCcEEeecCCCccccccc-cc-cCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSES-VS-TLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR- 233 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~- 233 (596)
.+|..+. ..+++|+|++|.|+.++.. +. .+++|++|++++| .+..+|. .+.++++|++|++++|. +..+|..
T Consensus 32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 107 (361)
T 2xot_A 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFL 107 (361)
T ss_dssp SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHH
Confidence 5666553 4688999999999987654 45 8899999999998 6776664 58899999999999998 7777654
Q ss_pred ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616 234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML 313 (596)
Q Consensus 234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 313 (596)
+..+++|++|++.++... ...+..+
T Consensus 108 ~~~l~~L~~L~L~~N~i~-------------------------------------------------------~~~~~~~ 132 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIV-------------------------------------------------------VVDRNAF 132 (361)
T ss_dssp TTTCTTCCEEECCSSCCC-------------------------------------------------------EECTTTT
T ss_pred hCCCcCCCEEECCCCccc-------------------------------------------------------EECHHHh
Confidence 677777777765433211 0011223
Q ss_pred CCCCCccEEEEeccCCCCCCCCCCC--CCCCCccEEEEecCCCCCCCC--CCCCCCc--cceeeccCcc
Q 007616 314 KPHYGLKELKVRGYGGTKFPAWLGQ--SSFENLVVLRFKNCNQCTTLP--SVGHLPS--LKNLVIKGMA 376 (596)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~l~--~l~~l~~--L~~L~L~~~~ 376 (596)
..+++|+.|++++|.+..+|..... ..+++|+.|++++|. ++.++ .++.++. ++.|++.+|+
T Consensus 133 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence 4456777777777777777655321 257788888888876 34444 3455555 3777887764
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=5.5e-11 Score=110.96 Aligned_cols=146 Identities=21% Similarity=0.210 Sum_probs=101.5
Q ss_pred CcEEeecCCCccccccccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc-ccCCcccCCCCcE
Q 007616 169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKF 246 (596)
Q Consensus 169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~ 246 (596)
-+.++.+++.++.+|..+. ++|++|++++| .+..+ |..++.+++|++|++++|. ++.+|.. +..+++|++|++.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECC
Confidence 5568888889999987664 89999999999 55555 6678899999999999998 7888765 5778888887754
Q ss_pred EeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEec
Q 007616 247 VVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRG 326 (596)
Q Consensus 247 ~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 326 (596)
++.... + ....+..+++|+.|++++
T Consensus 97 ~N~l~~------l-------------------------------------------------~~~~~~~l~~L~~L~Ls~ 121 (229)
T 3e6j_A 97 TNQLTV------L-------------------------------------------------PSAVFDRLVHLKELFMCC 121 (229)
T ss_dssp SSCCCC------C-------------------------------------------------CTTTTTTCTTCCEEECCS
T ss_pred CCcCCc------c-------------------------------------------------ChhHhCcchhhCeEeccC
Confidence 332210 0 001123345667777777
Q ss_pred cCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCcc
Q 007616 327 YGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 327 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~ 376 (596)
|.+..+|..+. .+++|+.|++++|.. +.++ .++.+++|+.|++.+|+
T Consensus 122 N~l~~lp~~~~--~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 122 NKLTELPRGIE--RLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCSCCTTGG--GCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcccccCcccc--cCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCC
Confidence 77666766654 667777777777763 3333 36667777777777765
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=1.8e-11 Score=129.11 Aligned_cols=162 Identities=18% Similarity=0.135 Sum_probs=120.1
Q ss_pred CCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCC
Q 007616 134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNL 213 (596)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 213 (596)
..+++.+.+..+.+. .+| ..+++|++|++++|.++.+|. ++. +|++|++++| .+..+|. .+
T Consensus 79 ~~~L~~L~Ls~N~l~---------~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l 139 (571)
T 3cvr_A 79 PPQITVLEITQNALI---------SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LP 139 (571)
T ss_dssp CTTCSEEECCSSCCS---------CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CC
T ss_pred cCCCCEEECcCCCCc---------ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCCCC---cC
Confidence 356777777666544 466 457899999999999999998 765 9999999999 7888987 68
Q ss_pred CccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccc
Q 007616 214 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKK 293 (596)
Q Consensus 214 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~ 293 (596)
++|++|++++|. ++.+|. .+++|++|++.++....... + . ++
T Consensus 140 ~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~---l-----------------------------~--~~ 181 (571)
T 3cvr_A 140 ALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE---L-----------------------------P--ES 181 (571)
T ss_dssp TTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC---C-----------------------------C--TT
T ss_pred ccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch---h-----------------------------h--CC
Confidence 999999999999 888887 57888888876554322111 1 1 45
Q ss_pred cccccccccCCcchhhhhccCCCCCc-------cEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC
Q 007616 294 LEALSPKWGNKIQTCVFEMLKPHYGL-------KELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP 359 (596)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~ 359 (596)
|+.|+++.+... .++. +.. +| +.|++++|.+..+|..+. .+++|+.|++++|...+.+|
T Consensus 182 L~~L~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 182 LEALDVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENIL--SLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCEEECCSSCCS--SCCC-CC----------CCEEEECCSSCCCCCCGGGG--GSCTTEEEECCSSSCCHHHH
T ss_pred CCEEECcCCCCC--chhh-HHH--hhhcccccceEEecCCCcceecCHHHh--cCCCCCEEEeeCCcCCCcCH
Confidence 666666665432 1222 222 55 999999999999999887 69999999999998665544
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=7.4e-11 Score=109.30 Aligned_cols=147 Identities=17% Similarity=0.141 Sum_probs=100.0
Q ss_pred CcEEeecCCCccccccccccCCcCcEEEccccccccccCC--cccCCCccceeecCCCCccccccc-cccCCcccCCCCc
Q 007616 169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP--DIGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAK 245 (596)
Q Consensus 169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~ 245 (596)
-+.++++++.++.+|..+. ..+++|++++| .+..++. .++++++|++|++++|. ++.++. .++.+++|++|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEEC
Confidence 3589999999999998764 46789999999 6777743 37899999999999998 777766 5888888888876
Q ss_pred EEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEe
Q 007616 246 FVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVR 325 (596)
Q Consensus 246 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 325 (596)
.++.... .....+..+++|+.|+++
T Consensus 89 s~N~l~~-------------------------------------------------------~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 89 TSNRLEN-------------------------------------------------------VQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSSCCCC-------------------------------------------------------CCGGGGTTCSSCCEEECT
T ss_pred CCCccCc-------------------------------------------------------cCHhHhcCCcCCCEEECC
Confidence 4332210 001122334556666666
Q ss_pred ccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616 326 GYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA 376 (596)
Q Consensus 326 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 376 (596)
+|.+..+ |..+. .+++|+.|++++|...+..| .++.+++|+.|++++|+
T Consensus 114 ~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 114 SNRITCVGNDSFI--GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSCCCCBCTTSST--TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCeECHhHcC--CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 6665555 33343 56777777777776444334 56677777777777764
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=1.4e-11 Score=108.97 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=48.4
Q ss_pred cCCCcEEeecCCCcc--ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccc-ccccccCCcccCC
Q 007616 166 LKHLRYLDFSHTAIE--VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEE-MPLRIGKLTSLRT 242 (596)
Q Consensus 166 l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~l~~l~~L~~ 242 (596)
.++|++|++++|.++ .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|. +.. +|..++.+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCE
Confidence 356666777766666 66666666667777777666 45555 556666667777776666 444 4444545666666
Q ss_pred CCcE
Q 007616 243 LAKF 246 (596)
Q Consensus 243 L~~~ 246 (596)
|++.
T Consensus 100 L~Ls 103 (168)
T 2ell_A 100 LNLS 103 (168)
T ss_dssp EECB
T ss_pred Eecc
Confidence 6543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.13 E-value=5.7e-11 Score=105.08 Aligned_cols=106 Identities=24% Similarity=0.294 Sum_probs=87.3
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccc-cCCccc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKK-LFPDIG 211 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~i~ 211 (596)
.+.+++.+.+..+.+.. + .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++
T Consensus 22 ~~~~L~~L~l~~n~l~~-----~--~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 92 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND-----G--KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAE 92 (168)
T ss_dssp CTTSCSEEECCSCBCBT-----T--BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHH
T ss_pred CcccCCEEECCCCCCCh-----h--hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHh
Confidence 35678888888776541 0 5778889999999999999999988 78899999999999999 5655 777777
Q ss_pred CCCccceeecCCCCcccccc--ccccCCcccCCCCcEEe
Q 007616 212 NLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVV 248 (596)
Q Consensus 212 ~L~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~~~~~ 248 (596)
++++|++|++++|. +..+| ..++.+++|++|++.++
T Consensus 93 ~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 93 KLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp HCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS
T ss_pred hCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC
Confidence 89999999999998 88876 56888888888876443
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=3.6e-11 Score=104.00 Aligned_cols=105 Identities=23% Similarity=0.315 Sum_probs=79.8
Q ss_pred CCceeEEEEeccccc-ccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccc-cCCccc
Q 007616 134 SRNLRHLSYLTSRFD-GIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKK-LFPDIG 211 (596)
Q Consensus 134 ~~~~~~l~~~~~~~~-~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~i~ 211 (596)
+.+++.+.+..+... + .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++
T Consensus 16 ~~~l~~L~l~~n~l~~~--------~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG--------KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBCBTT--------BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHH
T ss_pred CccCeEEEccCCcCChh--------HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhh
Confidence 356677777666544 2 5677778888889999988888877 67888888999999888 5555 777677
Q ss_pred CCCccceeecCCCCcccccc--ccccCCcccCCCCcEEec
Q 007616 212 NLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVVG 249 (596)
Q Consensus 212 ~L~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~~~~~~ 249 (596)
.+++|++|++++|. ++.+| ..++.+++|++|++.++.
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 78888999998888 66654 668888888888765443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=1.7e-10 Score=115.76 Aligned_cols=169 Identities=18% Similarity=0.137 Sum_probs=119.8
Q ss_pred CcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-cc-CCCccceeecCCCCcccccccc-ccCCcccCCCCc
Q 007616 169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IG-NLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK 245 (596)
Q Consensus 169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~-~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~ 245 (596)
-++++++++.++.+|..+. .++++|+|++| .+..+|.. +. ++++|++|++++|. +..++.. +..+++|++|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEEC
Confidence 3689999999999998764 46999999999 77777765 55 89999999999998 7777754 888888888875
Q ss_pred EEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEe
Q 007616 246 FVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVR 325 (596)
Q Consensus 246 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 325 (596)
.++... . .....+..+++|+.|+++
T Consensus 96 s~N~l~------~-------------------------------------------------~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 96 SSNHLH------T-------------------------------------------------LDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSSCCC------E-------------------------------------------------ECTTTTTTCTTCCEEECC
T ss_pred CCCcCC------c-------------------------------------------------CCHHHhCCCcCCCEEECC
Confidence 433210 0 001123446788889999
Q ss_pred ccCCCCCC-CCCCCCCCCCccEEEEecCCCCCCCCC--C---CCCCccceeeccCccCceEeCccccCCCCCCCCCC--c
Q 007616 326 GYGGTKFP-AWLGQSSFENLVVLRFKNCNQCTTLPS--V---GHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPS--L 397 (596)
Q Consensus 326 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~~--l---~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~--L 397 (596)
+|.+..++ ..+. .+++|+.|++++|. ++.+|. + +.+++|+.|+|++|. ++.++...... ++. +
T Consensus 121 ~N~i~~~~~~~~~--~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~-----l~~~~l 191 (361)
T 2xot_A 121 NNHIVVVDRNAFE--DMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQK-----LPAWVK 191 (361)
T ss_dssp SSCCCEECTTTTT--TCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHH-----SCHHHH
T ss_pred CCcccEECHHHhC--CcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhh-----ccHhhc
Confidence 98877664 4454 78999999999997 445552 3 679999999999864 55554322111 454 3
Q ss_pred ceeecccC
Q 007616 398 ETLCFEDM 405 (596)
Q Consensus 398 ~~L~l~~~ 405 (596)
+.|++.+.
T Consensus 192 ~~l~l~~N 199 (361)
T 2xot_A 192 NGLYLHNN 199 (361)
T ss_dssp TTEECCSS
T ss_pred ceEEecCC
Confidence 67777763
No 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.07 E-value=9.2e-11 Score=127.38 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=76.0
Q ss_pred hhhHHHHHHhhhhhhhhHH-HHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCcccee
Q 007616 15 FKGFRGALGVSYYCLLSYV-KRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQS 93 (596)
Q Consensus 15 ~~~i~~~L~lSY~~L~~~l-k~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~~~ 93 (596)
.+.|..+|++||+.||+++ |.||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++..
T Consensus 352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe
Confidence 3679999999999999998 99999999999999999999999999987 13588899999999999985
Q ss_pred cCCCCeEEEcchHHHHHH
Q 007616 94 KIDASRFLMHDLIHDLAC 111 (596)
Q Consensus 94 ~~~~~~~~mhd~i~~l~~ 111 (596)
. ...+++|||++++++.
T Consensus 421 ~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 421 P-KESTISIPSIYLELKV 437 (1221)
T ss_dssp S-SSSEEBCCCHHHHHHH
T ss_pred C-CCCEEEehHHHHHHhc
Confidence 3 5678999999999763
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=3.8e-11 Score=103.84 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=71.4
Q ss_pred ccCCCcEEeecCCCcc--ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccc-ccccccCCcccC
Q 007616 165 ELKHLRYLDFSHTAIE--VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEE-MPLRIGKLTSLR 241 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~l~~l~~L~ 241 (596)
..++|+.|++++|.++ .+|..++.+++|++|++++| .+..+ ..++.+++|++|++++|. +.. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCC
Confidence 4578999999999998 89998899999999999999 77777 779999999999999999 665 777777899999
Q ss_pred CCCcEEec
Q 007616 242 TLAKFVVG 249 (596)
Q Consensus 242 ~L~~~~~~ 249 (596)
+|++.++.
T Consensus 92 ~L~ls~N~ 99 (149)
T 2je0_A 92 HLNLSGNK 99 (149)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 99875443
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.07 E-value=1.2e-10 Score=103.92 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=35.9
Q ss_pred ccCCCcEEeecCCCccccccccccCC-cCcEEEccccccccccCCcccCCCccceeecCCCCccccccccc-cCCcccCC
Q 007616 165 ELKHLRYLDFSHTAIEVLSESVSTLY-NLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLRT 242 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l-~~l~~L~~ 242 (596)
.+.+|++|++++|.++.+|. +..+. +|++|++++| .+..+ ..++.+++|++|++++|. +..+|+++ +.+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCE
Confidence 34445555555554444432 22222 4555555554 34333 334445555555555554 44444332 44444554
Q ss_pred CCcEE
Q 007616 243 LAKFV 247 (596)
Q Consensus 243 L~~~~ 247 (596)
|++.+
T Consensus 93 L~L~~ 97 (176)
T 1a9n_A 93 LILTN 97 (176)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 44433
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=3.4e-11 Score=131.72 Aligned_cols=82 Identities=28% Similarity=0.303 Sum_probs=37.4
Q ss_pred ccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCccc
Q 007616 161 NDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL 240 (596)
Q Consensus 161 ~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L 240 (596)
..+..++.|++|+|++|.+..+|..+..+++|++|+|++| .+..+|..+++|++|++|+|++|. +..+|..+++|++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence 3344444455555555544444444444555555555544 344444444455555555555544 34444444444444
Q ss_pred CCCC
Q 007616 241 RTLA 244 (596)
Q Consensus 241 ~~L~ 244 (596)
++|+
T Consensus 296 ~~L~ 299 (727)
T 4b8c_D 296 KYFY 299 (727)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 4443
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=4.8e-12 Score=115.37 Aligned_cols=91 Identities=26% Similarity=0.207 Sum_probs=79.7
Q ss_pred ccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616 157 HELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 157 ~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
..+|..++.+++|++|++++|.++.+| .++.+++|++|++++| .+..+|..++.+++|++|++++|. +..+| .++.
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~ 113 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLS-GIEK 113 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcCC-cccc
Confidence 367778999999999999999999988 8899999999999999 788899888888999999999998 77777 6888
Q ss_pred CcccCCCCcEEeccC
Q 007616 237 LTSLRTLAKFVVGKG 251 (596)
Q Consensus 237 l~~L~~L~~~~~~~~ 251 (596)
+++|++|++.++...
T Consensus 114 l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 114 LVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHHSSEEEESEEECC
T ss_pred CCCCCEEECCCCcCC
Confidence 899999988777654
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.02 E-value=6.3e-10 Score=100.57 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccc
Q 007616 167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMP 231 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp 231 (596)
++|++|++++|.++.+|..+..+++|++|++++| .+..++. .+.++++|++|++++|. +..+|
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~ 94 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIP 94 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeC
Confidence 3555555555555555555555555555555555 4444432 35555555555555555 44433
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=2.4e-09 Score=105.85 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=47.1
Q ss_pred cCCCcEEeecCCCcc--------------------ccc-ccccc--------CCcCcEEEccccccccccCCc-ccCCCc
Q 007616 166 LKHLRYLDFSHTAIE--------------------VLS-ESVST--------LYNLQTLILEYCYRLKKLFPD-IGNLVN 215 (596)
Q Consensus 166 l~~L~~L~L~~~~i~--------------------~lp-~~i~~--------l~~L~~L~L~~~~~~~~lp~~-i~~L~~ 215 (596)
+++|++|||++|.+. .+| ..|.+ +.+|+.|++.. .++.+++. +.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 778999999998887 232 23445 77777777766 35555543 667777
Q ss_pred cceeecCCCCcccccccc-ccCCcccCCC
Q 007616 216 LRHLKDSHSNLLEEMPLR-IGKLTSLRTL 243 (596)
Q Consensus 216 L~~L~l~~~~~l~~lp~~-l~~l~~L~~L 243 (596)
|+.+++++|. +..++.. +..+.++..+
T Consensus 126 L~~l~l~~n~-i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 126 LKICQIRKKT-APNLLPEALADSVTAIFI 153 (329)
T ss_dssp CCEEEBCCSS-CCEECTTSSCTTTCEEEE
T ss_pred cceEEcCCCC-ccccchhhhcCCCceEEe
Confidence 7777777776 5555544 5444444444
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.99 E-value=7.3e-10 Score=100.16 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=32.1
Q ss_pred cEEeecCCCccccccccccCCcCcEEEccccccccccCCc--ccCCCccceeecCCCCccccc-cccccCCcccCCCC
Q 007616 170 RYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD--IGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLA 244 (596)
Q Consensus 170 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~ 244 (596)
++++++++.++.+|..+.. +|++|++++| .+..+|.. ++.+++|++|++++|. ++.+ |..++.+++|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEE
Confidence 4445555555555443322 4555555555 44444332 4455555555555554 3332 33344444444443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.98 E-value=8.8e-10 Score=99.63 Aligned_cols=107 Identities=30% Similarity=0.435 Sum_probs=89.9
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCC-cc
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DI 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i 210 (596)
++..++.+.+..+.+. .+|..|..+++|++|++++|.|+.++ ..|..+++|++|++++| .+..+|. .+
T Consensus 29 ~~~~l~~L~L~~n~i~---------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f 98 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFT---------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTF 98 (193)
T ss_dssp CCTTCCEEECCSSCCC---------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTT
T ss_pred CCCCCCEEECCCCcCc---------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 4456777777766554 67888999999999999999999886 46899999999999999 6777665 59
Q ss_pred cCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEecc
Q 007616 211 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGK 250 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~ 250 (596)
+.+++|++|++++|. +..+|.+ +..+++|++|++.++..
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 999999999999999 8888876 88899999998765544
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=4.8e-10 Score=122.61 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=91.2
Q ss_pred CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 214 (596)
..++.|.+..+.+. .+|..+..+++|++|+|++|.|+.+|..|+.+++|++|+|++| .+..+|..+++|+
T Consensus 224 ~~L~~L~Ls~n~l~---------~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 224 QLWHALDLSNLQIF---------NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp CCCCEEECTTSCCS---------CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred CCCcEEECCCCCCC---------CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 34555555544433 6888888999999999999999999999999999999999999 7889999999999
Q ss_pred ccceeecCCCCccccccccccCCcccCCCCcEEecc
Q 007616 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGK 250 (596)
Q Consensus 215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~ 250 (596)
+|++|++++|. ++.+|.+++++++|++|++.++..
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence 99999999998 889999999999999999765544
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.94 E-value=7.9e-10 Score=117.12 Aligned_cols=87 Identities=21% Similarity=0.191 Sum_probs=52.4
Q ss_pred cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccc--ccccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEM--PLRIG 235 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~l--p~~l~ 235 (596)
.+|. ++.+++|++|++++|.++.+|..++.+++|++|+|++| .++.+| .++++++|++|++++|. +..+ |..++
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~ 530 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLV 530 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGG
T ss_pred CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHh
Confidence 3444 56666666666666666666666666666666666666 555555 56666666666666665 4444 55566
Q ss_pred CCcccCCCCcEEe
Q 007616 236 KLTSLRTLAKFVV 248 (596)
Q Consensus 236 ~l~~L~~L~~~~~ 248 (596)
.+++|++|++.++
T Consensus 531 ~l~~L~~L~L~~N 543 (567)
T 1dce_A 531 SCPRLVLLNLQGN 543 (567)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEEecCC
Confidence 6666666655443
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=8e-10 Score=98.42 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=82.9
Q ss_pred CCceeEEEEecccccccccccccccCcccccccC-CCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcc-c
Q 007616 134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELK-HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDI-G 211 (596)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i-~ 211 (596)
+.+++.+.+..+.+. .+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++| .+..+|+.+ +
T Consensus 18 ~~~L~~L~l~~n~l~---------~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~ 85 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP---------VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQ 85 (176)
T ss_dssp TTSCEEEECTTSCCC---------SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred cCCceEEEeeCCCCc---------hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhh
Confidence 456677777766554 3433 44454 999999999999988 67899999999999999 788888765 8
Q ss_pred CCCccceeecCCCCccccccc--cccCCcccCCCCcEEec
Q 007616 212 NLVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVG 249 (596)
Q Consensus 212 ~L~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~~~~~~ 249 (596)
.+++|++|++++|. ++.+|. .++.+++|++|++.++.
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC
Confidence 99999999999998 788887 68888999988875544
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=1.5e-09 Score=98.00 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=67.1
Q ss_pred CceeEEEEecccccccccccccccCcc--cccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCC-cc
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELPN--DIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFP-DI 210 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~--~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~-~i 210 (596)
..++.+.+..+.+. .+|. .++.+++|++|++++|.++.+ |..++.+++|++|++++| .+..+|. .+
T Consensus 29 ~~l~~L~l~~n~i~---------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 98 (192)
T 1w8a_A 29 LHTTELLLNDNELG---------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMF 98 (192)
T ss_dssp TTCSEEECCSCCCC---------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSS
T ss_pred CCCCEEECCCCcCC---------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHh
Confidence 35555655555443 3333 267777777777777777755 556777777777777777 5555543 36
Q ss_pred cCCCccceeecCCCCccccccccccCCcccCCCCcEEecc
Q 007616 211 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGK 250 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~ 250 (596)
+.+++|++|++++|...+..|..++.+++|++|++.++..
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 7777777777777773333355577777777776654443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=1.2e-09 Score=96.84 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=77.6
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. ++|++|++++|.++.+ |..++.+++|++|+|++| .+..+|.. ++++++|++|++++|. +..+|.+ +
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 101 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAF 101 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHHh
Confidence 6777664 8999999999999987 567899999999999999 88888876 5899999999999998 8888887 8
Q ss_pred cCCcccCCCCcEEecc
Q 007616 235 GKLTSLRTLAKFVVGK 250 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~ 250 (596)
+.+++|++|++.++..
T Consensus 102 ~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTCTTCSEEECCSSCB
T ss_pred ccccCCCEEEeCCCCc
Confidence 8999999998876654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=1.1e-11 Score=112.96 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=63.8
Q ss_pred CcEEeecCC--CccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcE
Q 007616 169 LRYLDFSHT--AIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 246 (596)
Q Consensus 169 L~~L~L~~~--~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~ 246 (596)
|+...+.++ .++.+|..++.+++|++|++++| .+..+| .++++++|++|++++|. +..+|..+..+++|++|++.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence 444444443 45556668999999999999999 788888 89999999999999998 88898877778889988887
Q ss_pred Eecc
Q 007616 247 VVGK 250 (596)
Q Consensus 247 ~~~~ 250 (596)
++..
T Consensus 102 ~N~l 105 (198)
T 1ds9_A 102 YNQI 105 (198)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 7654
No 137
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.91 E-value=1.3e-09 Score=127.80 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=79.2
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCccceecC
Q 007616 16 KGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKI 95 (596)
Q Consensus 16 ~~i~~~L~lSY~~L~~~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~~~~~ 95 (596)
+.+..++++||+.|++++|.||+|||+||+++.|+++.++++|.++ ++.++.++++|+++||++....
T Consensus 362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~ 429 (1249)
T 3sfz_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRN 429 (1249)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEES
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecC
Confidence 5799999999999999999999999999999999999999999654 3678899999999999997652
Q ss_pred -CCCeEEEcchHHHHHHHhhccc
Q 007616 96 -DASRFLMHDLIHDLACWASGEI 117 (596)
Q Consensus 96 -~~~~~~mhd~i~~l~~~~~~~~ 117 (596)
...+|+|||++|++++..+.++
T Consensus 430 ~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 430 GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCceEEEecHHHHHHHHhhhhHH
Confidence 2235999999999999886654
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=2.5e-09 Score=94.47 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=76.7
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-c
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-I 234 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l 234 (596)
.+|..+. ++|++|++++|.|+.+ |..++.+++|++|++++| .+..+|.. ++++++|++|++++|. +..+|.+ +
T Consensus 23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~ 98 (170)
T 3g39_A 23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAF 98 (170)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeCHHHh
Confidence 5776663 7899999999999988 567899999999999999 78888776 5899999999999998 8888876 8
Q ss_pred cCCcccCCCCcEEecc
Q 007616 235 GKLTSLRTLAKFVVGK 250 (596)
Q Consensus 235 ~~l~~L~~L~~~~~~~ 250 (596)
..+++|++|++.++..
T Consensus 99 ~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCTTCCEEECCSSCB
T ss_pred cCCCCCCEEEeCCCCC
Confidence 8999999998876654
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.85 E-value=5.2e-09 Score=93.17 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=63.3
Q ss_pred CceeEEEEecccccccccccccccCc-ccccccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCCc-cc
Q 007616 135 RNLRHLSYLTSRFDGIKRFEGLHELP-NDIAELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFPD-IG 211 (596)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~-i~ 211 (596)
..++.+.+..+.+. .+| ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|.. ++
T Consensus 28 ~~l~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 97 (177)
T 2o6r_A 28 SSATRLELESNKLQ---------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFD 97 (177)
T ss_dssp TTCSEEECCSSCCC---------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEEeCCCccc---------EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhh
Confidence 45555555554433 233 3356677777777777777766543 466777777777777 55555544 56
Q ss_pred CCCccceeecCCCCcccccccc-ccCCcccCCCCcEEe
Q 007616 212 NLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVV 248 (596)
Q Consensus 212 ~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~ 248 (596)
.+++|++|++++|. ++.+|.. +..+++|++|++.++
T Consensus 98 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 98 KLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 67777777777776 5666655 455666776665444
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=8.4e-10 Score=109.12 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=55.8
Q ss_pred ccCCCcEEeecCCCcc-cccccccc-CCcCcEEEcccccccc--------------------ccCCc-ccC--------C
Q 007616 165 ELKHLRYLDFSHTAIE-VLSESVST-LYNLQTLILEYCYRLK--------------------KLFPD-IGN--------L 213 (596)
Q Consensus 165 ~l~~L~~L~L~~~~i~-~lp~~i~~-l~~L~~L~L~~~~~~~--------------------~lp~~-i~~--------L 213 (596)
.+.+++.|.++++--. .+ ..+.. +++|++|||++| .+. .+|+. +.+ +
T Consensus 23 ~~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred hhCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence 4678899999875211 22 22333 889999999999 555 33432 556 8
Q ss_pred CccceeecCCCCcccccccc-ccCCcccCCCCcEEec
Q 007616 214 VNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVG 249 (596)
Q Consensus 214 ~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~ 249 (596)
++|+.|++.+ . ++.++.+ +..+++|+++++..+.
T Consensus 101 ~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 101 QTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp TTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS
T ss_pred CCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC
Confidence 8899999988 4 7777766 7888888888765443
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.83 E-value=1.6e-08 Score=89.98 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=38.9
Q ss_pred CcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-ccCCcccCCCC
Q 007616 169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLA 244 (596)
Q Consensus 169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~ 244 (596)
.+.++++++.++.+|..+. ++|++|++++| .+..+|.. ++.+++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEE
Confidence 3455666666666654332 46666666666 44444433 4566666666666665 4554443 34444444444
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=1.8e-08 Score=89.16 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=77.1
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCCc-c
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFPD-I 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~-i 210 (596)
++..++.|.+..+.+.+ ..|..|+.+++|++|+|++|.++.+|.. +..+++|++|++++| .+..+|.. +
T Consensus 31 ~~~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 101 (174)
T 2r9u_A 31 IPTDKQRLWLNNNQITK--------LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAF 101 (174)
T ss_dssp CCTTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cCCCCcEEEeCCCCccc--------cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHh
Confidence 34667778777776654 3367789999999999999999999875 589999999999999 78888876 8
Q ss_pred cCCCccceeecCCCCccccccccccC
Q 007616 211 GNLVNLRHLKDSHSNLLEEMPLRIGK 236 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~lp~~l~~ 236 (596)
+.+++|++|++++|. +...|..+..
T Consensus 102 ~~l~~L~~L~L~~N~-~~c~~~~~~~ 126 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNP-WDCECRDIMY 126 (174)
T ss_dssp TTCTTCSEEECCSSC-BCTTBGGGHH
T ss_pred ccccCCCEEEeCCCC-cccccccHHH
Confidence 999999999999998 6665554433
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=2.2e-08 Score=99.78 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=77.9
Q ss_pred cccCcccccccCCCcEEeecC-CCccccc-cccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCccccccc
Q 007616 156 LHELPNDIAELKHLRYLDFSH-TAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPL 232 (596)
Q Consensus 156 l~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~ 232 (596)
+..+|. +..+++|++|+|++ |.++.+| ..|+.+++|++|+|++| .+..+|+ .+++|++|++|+|++|. +..+|.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA-LESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC-CSCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc-cceeCH
Confidence 337898 99999999999996 9999887 57899999999999999 6776665 58999999999999999 889988
Q ss_pred cccCCcccCCCCcEEeccC
Q 007616 233 RIGKLTSLRTLAKFVVGKG 251 (596)
Q Consensus 233 ~l~~l~~L~~L~~~~~~~~ 251 (596)
++.....|+.|++.++...
T Consensus 98 ~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCCCCEEECCSSCCC
T ss_pred HHcccCCceEEEeeCCCcc
Confidence 7554444888887666543
No 144
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.59 E-value=4.6e-08 Score=104.97 Aligned_cols=87 Identities=21% Similarity=0.320 Sum_probs=75.1
Q ss_pred hhhHHHHHHhhhhhhhhHHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCccceec
Q 007616 15 FKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSK 94 (596)
Q Consensus 15 ~~~i~~~L~lSY~~L~~~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~~~~ 94 (596)
...+..+++.||+.||++.|.||+++|+||+|+.|+.+.++..|.++ .+.+..++++|++++|++...
T Consensus 361 ~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp CHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEE
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEec
Confidence 35799999999999999999999999999999999999999999653 245788999999999998654
Q ss_pred C-CCCeEEEcchHHHHHHHh
Q 007616 95 I-DASRFLMHDLIHDLACWA 113 (596)
Q Consensus 95 ~-~~~~~~mhd~i~~l~~~~ 113 (596)
. ....++|||++|+++...
T Consensus 429 ~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 429 NGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp ETTEEEEECCHHHHHHHHHH
T ss_pred CCCccEEEEcHHHHHHHHhh
Confidence 2 234799999999999876
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.57 E-value=1.5e-07 Score=82.94 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=72.6
Q ss_pred cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCCc-c
Q 007616 133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFPD-I 210 (596)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~-i 210 (596)
++..++.+.+..+.+.. ..|..|..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +
T Consensus 28 ~~~~l~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~ 98 (170)
T 3g39_A 28 IPTTTQVLYLYDNQITK--------LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAF 98 (170)
T ss_dssp CCTTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCCcEEEcCCCcCCc--------cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 34667777777766554 2367789999999999999999998865 589999999999999 78888765 8
Q ss_pred cCCCccceeecCCCCccccc
Q 007616 211 GNLVNLRHLKDSHSNLLEEM 230 (596)
Q Consensus 211 ~~L~~L~~L~l~~~~~l~~l 230 (596)
+++++|++|++++|. +.-.
T Consensus 99 ~~l~~L~~L~L~~N~-~~c~ 117 (170)
T 3g39_A 99 DNLKSLTHIWLLNNP-WDCA 117 (170)
T ss_dssp TTCTTCCEEECCSSC-BCTT
T ss_pred cCCCCCCEEEeCCCC-CCCC
Confidence 999999999999998 4433
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.37 E-value=2.9e-05 Score=78.35 Aligned_cols=192 Identities=13% Similarity=0.144 Sum_probs=108.8
Q ss_pred ccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCccccccccccCCccc
Q 007616 163 IAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL 240 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L 240 (596)
|.+. +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .+..++ ..+.++.+|+.+++.+|. +..+|.+.....+|
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGI 205 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCC
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeeccc
Confidence 4443 6888888765 666653 4555 3688888876 455555 347788888888888877 77887774445666
Q ss_pred CCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCcc
Q 007616 241 RTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLK 320 (596)
Q Consensus 241 ~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 320 (596)
+.+.+. ..+..++ ...+.++++|+.+.+..+- ..-....+.. .+|+
T Consensus 206 ~~l~lp-------~~l~~I~------------------------~~aF~~~~~L~~l~l~~~l--~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 206 EEVLLP-------VTLKEIG------------------------SQAFLKTSQLKTIEIPENV--STIGQEAFRE-SGIT 251 (401)
T ss_dssp SEEECC-------TTCCEEC------------------------TTTTTTCTTCCCEECCTTC--CEECTTTTTT-CCCS
T ss_pred CEEEeC-------Cchheeh------------------------hhHhhCCCCCCEEecCCCc--cCcccccccc-CCcc
Confidence 666431 0011110 0125566666666664321 1111112222 5677
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCC----CCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCCC
Q 007616 321 ELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQC----TTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPF 394 (596)
Q Consensus 321 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 394 (596)
.+.+.+ ....++.... ..+++|+.+.+.++... ..++ .+.++++|+.+.+.+ .++.++...+.+ +
T Consensus 252 ~i~lp~-~i~~I~~~aF-~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~-----c 322 (401)
T 4fdw_A 252 TVKLPN-GVTNIASRAF-YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGG-----N 322 (401)
T ss_dssp EEEEET-TCCEECTTTT-TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTT-----C
T ss_pred EEEeCC-CccEEChhHh-hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcC-----C
Confidence 777743 3333433222 16778888888765532 1233 466677777777763 366665443322 5
Q ss_pred CCcceeecc
Q 007616 395 PSLETLCFE 403 (596)
Q Consensus 395 ~~L~~L~l~ 403 (596)
++|+.+.|.
T Consensus 323 ~~L~~l~lp 331 (401)
T 4fdw_A 323 RKVTQLTIP 331 (401)
T ss_dssp CSCCEEEEC
T ss_pred CCccEEEEC
Confidence 666666664
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.18 E-value=3.9e-06 Score=83.33 Aligned_cols=74 Identities=24% Similarity=0.212 Sum_probs=60.9
Q ss_pred cEEeecCC-CccccccccccCCcCcEEEccc-cccccccC-CcccCCCccceeecCCCCcccccccc-ccCCcccCCCCc
Q 007616 170 RYLDFSHT-AIEVLSESVSTLYNLQTLILEY-CYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK 245 (596)
Q Consensus 170 ~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~ 245 (596)
..++++++ .++.+|. ++.+.+|++|+|++ | .+..+| ..+++|++|++|+|++|. +..+|+. +++|++|++|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence 34688888 8999999 99999999999996 7 788777 459999999999999998 7776654 677777777765
Q ss_pred E
Q 007616 246 F 246 (596)
Q Consensus 246 ~ 246 (596)
.
T Consensus 88 ~ 88 (347)
T 2ifg_A 88 S 88 (347)
T ss_dssp C
T ss_pred C
Confidence 4
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=8.7e-05 Score=74.90 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=27.8
Q ss_pred CCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEec
Q 007616 530 FVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYL 567 (596)
Q Consensus 530 ~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~ 567 (596)
.+.++++|+.+.+.. +++.++...+ +++|+.+++..
T Consensus 338 aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 338 SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 577888999998875 3788877655 67899988863
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.15 E-value=3.4e-05 Score=77.84 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=124.5
Q ss_pred ccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc-ccCCccc
Q 007616 163 IAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL 240 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L 240 (596)
|.. .+|+.+.+.. .++.++ ..|.+|.+|+.+++..+ .+..+|...-...+|+.+.+..+ +..++.. +..+++|
T Consensus 154 F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L 228 (401)
T 4fdw_A 154 FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQL 228 (401)
T ss_dssp TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTC
T ss_pred cCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCC
Confidence 444 3699999986 677665 57889999999999988 78888877555789999999854 6777765 7788888
Q ss_pred CCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCcc
Q 007616 241 RTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLK 320 (596)
Q Consensus 241 ~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 320 (596)
+.+.+.. .+..++. ..+.+ .+|+.+.+... ...-....+..+++|+
T Consensus 229 ~~l~l~~-------~l~~I~~------------------------~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~ 274 (401)
T 4fdw_A 229 KTIEIPE-------NVSTIGQ------------------------EAFRE-SGITTVKLPNG--VTNIASRAFYYCPELA 274 (401)
T ss_dssp CCEECCT-------TCCEECT------------------------TTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCC
T ss_pred CEEecCC-------CccCccc------------------------ccccc-CCccEEEeCCC--ccEEChhHhhCCCCCC
Confidence 8886421 1111100 01222 34555555221 1111223455678888
Q ss_pred EEEEeccCCC-----CCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCC
Q 007616 321 ELKVRGYGGT-----KFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEP 393 (596)
Q Consensus 321 ~L~l~~~~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 393 (596)
.+.+.++... .++.... ..+++|+.+.+.+. ++.++ .+.++++|+.+.+.. .++.++...+.+
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF-~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~----- 344 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCL-EGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNN----- 344 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTT-TTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSS-----
T ss_pred EEEeCCccccCCcccEECHHHh-hCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCC-----
Confidence 8888776543 2333322 26789999998842 55555 577889999999965 366776543332
Q ss_pred CCCcceeeccc
Q 007616 394 FPSLETLCFED 404 (596)
Q Consensus 394 ~~~L~~L~l~~ 404 (596)
+ +|+.+.+.+
T Consensus 345 ~-~L~~l~l~~ 354 (401)
T 4fdw_A 345 T-GIKEVKVEG 354 (401)
T ss_dssp S-CCCEEEECC
T ss_pred C-CCCEEEEcC
Confidence 5 777777765
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.98 E-value=3.9e-06 Score=83.19 Aligned_cols=168 Identities=16% Similarity=0.122 Sum_probs=93.9
Q ss_pred cCcccccccCCCcEEeecCCCcc----------ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIE----------VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLL 227 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~----------~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l 227 (596)
.+..++.++++|+.|.+.+.... .++..+..+++|+.|++++|..+ .+|. +. +++|++|++..|...
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC
Confidence 34556778899999999765321 34555678899999999988333 4554 43 889999999887722
Q ss_pred ccccccc--cCCcccCCCCcEEec--cCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccC
Q 007616 228 EEMPLRI--GKLTSLRTLAKFVVG--KGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGN 303 (596)
Q Consensus 228 ~~lp~~l--~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 303 (596)
......+ .++++|++|+++... ......+..+..+ + ....+++|+.|.+..+.
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~--l---------------------~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL--F---------------------SKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG--S---------------------CTTTCTTCCEEEEESCT
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH--H---------------------hcCCCCCcCEEeCCCCC
Confidence 2222223 368888888764321 1111112221110 0 01235566666665544
Q ss_pred Ccchh--hhhccCCCCCccEEEEeccCCCC-----CCCCCCCCCCCCccEEEEecCC
Q 007616 304 KIQTC--VFEMLKPHYGLKELKVRGYGGTK-----FPAWLGQSSFENLVVLRFKNCN 353 (596)
Q Consensus 304 ~~~~~--~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~ 353 (596)
..... .......+++|+.|+++.|.... ++..+. .+++|+.|++++|.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~--~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD--KIKHLKFINMKYNY 318 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH--HHTTCSEEECCSBB
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc--cCCcceEEECCCCc
Confidence 32111 11111235677777776665432 121111 45678888887775
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.98 E-value=3.1e-07 Score=91.84 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=83.5
Q ss_pred cCCCcEEeecCCCcccc-----ccccc-cCCcCcEEEccccccccc--cCCcccCCCccceeecCCCCcccccc-ccc--
Q 007616 166 LKHLRYLDFSHTAIEVL-----SESVS-TLYNLQTLILEYCYRLKK--LFPDIGNLVNLRHLKDSHSNLLEEMP-LRI-- 234 (596)
Q Consensus 166 l~~L~~L~L~~~~i~~l-----p~~i~-~l~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~lp-~~l-- 234 (596)
+++|+.|++++|.++.. ...+. ...+|++|+|++| .+.. +..-...+++|++|++++|. ++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence 45677788887777632 22222 2257888888877 3432 11112345677788888776 43321 111
Q ss_pred ---cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcch---h
Q 007616 235 ---GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT---C 308 (596)
Q Consensus 235 ---~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~ 308 (596)
...++|++|++.++.... .....+...+..+++|+.|++++|..... .
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~--------------------------~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTA--------------------------AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHH--------------------------HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred HHHhcCCccceeeCCCCCCCh--------------------------HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence 234455655543322100 00112223345566677777777653221 1
Q ss_pred hhhccCCCCCccEEEEeccCCCCC-----CCCCCCCCCCCccEEEEecCC
Q 007616 309 VFEMLKPHYGLKELKVRGYGGTKF-----PAWLGQSSFENLVVLRFKNCN 353 (596)
Q Consensus 309 ~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~ 353 (596)
....+...++|+.|++++|.++.. ...+. ..++|++|++++|.
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~--~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAR--EHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH--HCSSCCEEECTTSS
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH--hCCCCCEEeccCCC
Confidence 234455566788888887765421 11111 34678888888886
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.83 E-value=6.5e-07 Score=89.49 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=83.6
Q ss_pred CCCcEEeecCCCccc--cccccccCCcCcEEEccccccccccC-Ccc-----cCCCccceeecCCCCcccc-----cccc
Q 007616 167 KHLRYLDFSHTAIEV--LSESVSTLYNLQTLILEYCYRLKKLF-PDI-----GNLVNLRHLKDSHSNLLEE-----MPLR 233 (596)
Q Consensus 167 ~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i-----~~L~~L~~L~l~~~~~l~~-----lp~~ 233 (596)
++|++|+|++|.++. +......+++|++|+|++| .++... ..+ ....+|++|++++|. ++. ++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 689999999998873 2333345778999999998 554321 112 246789999999998 544 4445
Q ss_pred ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcch---hhh
Q 007616 234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT---CVF 310 (596)
Q Consensus 234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~ 310 (596)
+..+++|++|++.++... .. ....+...+...++|+.|++++|..... ...
T Consensus 179 L~~~~~L~~L~Ls~N~l~------~~--------------------g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLG------DE--------------------GLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp HHTCSSCCEEECTTSSCH------HH--------------------HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred HhcCCCcCEEeCCCCCCC------cH--------------------HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 567778888876433221 10 0112233455566777777777654322 122
Q ss_pred hccCCCCCccEEEEeccCCC
Q 007616 311 EMLKPHYGLKELKVRGYGGT 330 (596)
Q Consensus 311 ~~l~~~~~L~~L~l~~~~~~ 330 (596)
..+...++|+.|++++|.++
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCC
T ss_pred HHHHhCCCCCEEeccCCCCC
Confidence 33445577888888877643
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=0.00096 Score=67.15 Aligned_cols=55 Identities=7% Similarity=0.102 Sum_probs=26.5
Q ss_pred ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccCCC
Q 007616 185 SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTL 243 (596)
Q Consensus 185 ~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L 243 (596)
.|.++.+|+.+.+..+ ++.+++ .+.++.+|+.+++..+ ++.++.. +..+.+|+.+
T Consensus 66 AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i 122 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSI 122 (394)
T ss_dssp TTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCC
T ss_pred HhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhh
Confidence 3455555555555432 444432 2555566666655433 3344433 4445555444
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=1.3e-05 Score=75.17 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=59.7
Q ss_pred cccCCCcEEeecCCCccccc---cccccCCcCcEEEccccccccccCCcccCCC--ccceeecCCCCccccccc------
Q 007616 164 AELKHLRYLDFSHTAIEVLS---ESVSTLYNLQTLILEYCYRLKKLFPDIGNLV--NLRHLKDSHSNLLEEMPL------ 232 (596)
Q Consensus 164 ~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L~l~~~~~l~~lp~------ 232 (596)
..+++|+.|+|++|.|+.++ ..++.+++|++|+|++| .+..+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46789999999999888654 56678999999999998 66665 3355555 899999999985444552
Q ss_pred -cccCCcccCCCCc
Q 007616 233 -RIGKLTSLRTLAK 245 (596)
Q Consensus 233 -~l~~l~~L~~L~~ 245 (596)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2567788888764
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=1e-05 Score=70.23 Aligned_cols=91 Identities=11% Similarity=0.180 Sum_probs=60.2
Q ss_pred cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcccCC----CccceeecCCCCcccccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDIGNL----VNLRHLKDSHSNLLEEMP 231 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L----~~L~~L~l~~~~~l~~lp 231 (596)
.+|.....-.+|+.||+++|.|+.. -..+..+++|++|+|++|..+++- -..+..+ ++|++|++++|..+++-.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4565443345799999999998732 345788999999999999666531 1224443 479999999997666521
Q ss_pred -ccccCCcccCCCCcEEe
Q 007616 232 -LRIGKLTSLRTLAKFVV 248 (596)
Q Consensus 232 -~~l~~l~~L~~L~~~~~ 248 (596)
..+.++++|++|++.++
T Consensus 132 l~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHHGGGCTTCCEEEEESC
T ss_pred HHHHhcCCCCCEEECCCC
Confidence 12455666666655433
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=1.1e-05 Score=70.09 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=50.9
Q ss_pred ceeEEEEecccccccccccccccCcccccccCCCcEEeecCC-Cccc-cccccccC----CcCcEEEcccccccccc-CC
Q 007616 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHT-AIEV-LSESVSTL----YNLQTLILEYCYRLKKL-FP 208 (596)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~-~i~~-lp~~i~~l----~~L~~L~L~~~~~~~~l-p~ 208 (596)
.+.++.+....+.. .+ -..+..+++|+.|+|++| .|+. --..++.+ ++|++|++++|..+++- -.
T Consensus 62 ~L~~LDLs~~~Itd----~G----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMS----IG----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCCCCG----GG----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCCccH----HH----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 45666666554322 11 122456778888888887 4662 12334443 46888888888655431 12
Q ss_pred cccCCCccceeecCCCCcccc
Q 007616 209 DIGNLVNLRHLKDSHSNLLEE 229 (596)
Q Consensus 209 ~i~~L~~L~~L~l~~~~~l~~ 229 (596)
.+.++++|++|++++|..++.
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 356778888888888875554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=3.1e-05 Score=68.91 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=61.0
Q ss_pred cccccccCCCcEEeecCC-Ccc-----ccccccccCCcCcEEEccccccccc-----cCCcccCCCccceeecCCCCccc
Q 007616 160 PNDIAELKHLRYLDFSHT-AIE-----VLSESVSTLYNLQTLILEYCYRLKK-----LFPDIGNLVNLRHLKDSHSNLLE 228 (596)
Q Consensus 160 p~~~~~l~~L~~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~~l~ 228 (596)
...+...+.|++|+|++| .+. .+...+...++|++|+|++| .++. +...+...++|++|++++|. ++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 344567889999999999 886 34566777889999999999 4432 33445566889999999998 55
Q ss_pred c-----ccccccCCcccCCCCc
Q 007616 229 E-----MPLRIGKLTSLRTLAK 245 (596)
Q Consensus 229 ~-----lp~~l~~l~~L~~L~~ 245 (596)
. +...+...++|++|++
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHHHHhCCCceEEEe
Confidence 4 4455666667777765
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.16 E-value=0.0001 Score=72.98 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=78.8
Q ss_pred CcccccccCCCcEEeecCCCccccccccccCCcCcEEEcccccccc-ccCCccc--CCCccceeecCCCCc-------cc
Q 007616 159 LPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLK-KLFPDIG--NLVNLRHLKDSHSNL-------LE 228 (596)
Q Consensus 159 lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~lp~~i~--~L~~L~~L~l~~~~~-------l~ 228 (596)
++..+..+++|+.|+++++.-..++. + .+++|++|++..| .+. .....+. .+++|++|+|+.+.. +.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 55556788999999999884234554 4 3899999999988 332 2112233 789999999864221 11
Q ss_pred cccccc--cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcc
Q 007616 229 EMPLRI--GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQ 306 (596)
Q Consensus 229 ~lp~~l--~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 306 (596)
.+...+ ..+++|++|++.++... . ...........+++|+.|+++.+....
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~--------------------------~-~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQ--------------------------N-VVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTH--------------------------H-HHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCc--------------------------h-HHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 111111 12445555544322110 0 000111112356788888887665322
Q ss_pred h---hhhhccCCCCCccEEEEeccCC
Q 007616 307 T---CVFEMLKPHYGLKELKVRGYGG 329 (596)
Q Consensus 307 ~---~~~~~l~~~~~L~~L~l~~~~~ 329 (596)
. .....+..+++|+.|++++|.+
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcC
Confidence 2 1233334567888888887753
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.11 E-value=5.7e-05 Score=67.16 Aligned_cols=109 Identities=14% Similarity=0.108 Sum_probs=74.9
Q ss_pred CceeEEEEecc-cccccccccccccCcccccccCCCcEEeecCCCccc-----cccccccCCcCcEEEccccccccc---
Q 007616 135 RNLRHLSYLTS-RFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEV-----LSESVSTLYNLQTLILEYCYRLKK--- 205 (596)
Q Consensus 135 ~~~~~l~~~~~-~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~--- 205 (596)
..++.+.+..+ .+.. .+...+...+...++|++|+|++|.|.. +...+...++|++|+|++| .++.
T Consensus 36 ~~L~~L~L~~n~~i~~----~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPV----PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp TTCCEEECTTCTTCCH----HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred CCCCEEEecCCCCCCH----HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHH
Confidence 34666666554 3321 1111345566778899999999999873 4556777789999999999 5543
Q ss_pred --cCCcccCCCccceeec--CCCCcccc-----ccccccCCcccCCCCcEEec
Q 007616 206 --LFPDIGNLVNLRHLKD--SHSNLLEE-----MPLRIGKLTSLRTLAKFVVG 249 (596)
Q Consensus 206 --lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~l~~l~~L~~L~~~~~~ 249 (596)
+...+...++|++|++ ++|. ++. +...+...++|++|++.++.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4566778889999999 7787 544 33445556778888764443
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.09 E-value=0.034 Score=55.69 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecC
Q 007616 530 FVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLC 568 (596)
Q Consensus 530 ~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C 568 (596)
.+.++++|+.+.+.. +++.+....+ +++|+.+++.+.
T Consensus 329 aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 329 AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 466677777777753 3666665444 567777777654
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.06 E-value=0.0048 Score=61.99 Aligned_cols=102 Identities=15% Similarity=0.246 Sum_probs=60.9
Q ss_pred CCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEe
Q 007616 340 SFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIV 417 (596)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~ 417 (596)
.+.+|+.+.+.... ..+. .+.++++|+.+.+.. .++.++...+.+ +.+|+.+.|.+ +++.+.
T Consensus 263 ~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~-----c~~L~~i~lp~--~v~~I~----- 326 (394)
T 4gt6_A 263 SCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPESVFAG-----CISLKSIDIPE--GITQIL----- 326 (394)
T ss_dssp TCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-----CTTCCEEECCT--TCCEEC-----
T ss_pred ecccccEEeccccc--ceecCcccccccccccccCCC--cccccCceeecC-----CCCcCEEEeCC--cccEeh-----
Confidence 46677877775432 2222 456678888888753 466666543332 67788877753 122221
Q ss_pred cCCCCCCCCCCCCCCCCEEEEeec-cCh-hccCCCCCCcceEEecCCc
Q 007616 418 RCPKLKGRLPQRFSSLERIVITSC-EQL-LVSYTALPPLCELEIDGFS 463 (596)
Q Consensus 418 ~c~~L~~~~p~~l~~L~~L~l~~c-~~l-~~~~~~l~~L~~L~l~~c~ 463 (596)
...-..+.+|+.+.+... ..+ ...|.++++|+.+++.++.
T Consensus 327 ------~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 327 ------DDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp ------TTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ------HhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence 011235677888887432 223 4567788888888888765
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.79 E-value=0.00084 Score=62.87 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=58.3
Q ss_pred ceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCC--cCcEEEccccccccccCC-----
Q 007616 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLY--NLQTLILEYCYRLKKLFP----- 208 (596)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~~~~lp~----- 208 (596)
.++.|.+..+.+.++. .+|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+|.
T Consensus 171 ~L~~L~Ls~N~l~~l~------~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLD------DMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp TCCEEECTTSCCCCCG------GGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred CCCEEECCCCCCCCCc------cchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 5666666666555433 5667778999999999999999977 3355555 999999999944444542
Q ss_pred --cccCCCccceeec
Q 007616 209 --DIGNLVNLRHLKD 221 (596)
Q Consensus 209 --~i~~L~~L~~L~l 221 (596)
.+..+++|+.||-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 2678899998864
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.22 E-value=0.2 Score=49.62 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=19.7
Q ss_pred CCCCCCEEEEeecc--Ch-hccCCCCCCcceEEecC
Q 007616 429 RFSSLERIVITSCE--QL-LVSYTALPPLCELEIDG 461 (596)
Q Consensus 429 ~l~~L~~L~l~~c~--~l-~~~~~~l~~L~~L~l~~ 461 (596)
.+++|+.+.+.++. .+ ...|.++.+|+.+.+..
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 45667777765432 22 34566677777777643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.23 E-value=0.023 Score=46.62 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=31.4
Q ss_pred EEeecCCCcc--ccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCC
Q 007616 171 YLDFSHTAIE--VLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSN 225 (596)
Q Consensus 171 ~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 225 (596)
+++.+++.++ .+|..+. .+|++|+|++| .+..+|.. +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 5566666665 6664432 35666666666 56666544 4566667777776665
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.01 E-value=0.09 Score=43.04 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=33.7
Q ss_pred cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccc
Q 007616 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYC 200 (596)
Q Consensus 158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~ 200 (596)
.+|..+. .+|++|+|++|.|+.+|. .|..+++|++|+|++|
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555432 369999999999999975 5688999999999998
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.25 E-value=1.1 Score=44.06 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=48.6
Q ss_pred ccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcc
Q 007616 163 IAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTS 239 (596)
Q Consensus 163 ~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~ 239 (596)
+..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.++. ++.++.. +.++.+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhhhhcCCCC
Confidence 455667777777654 44443 34566777777777543 444443 35667777777776665 5666554 666677
Q ss_pred cCCCCc
Q 007616 240 LRTLAK 245 (596)
Q Consensus 240 L~~L~~ 245 (596)
|+.+.+
T Consensus 312 L~~i~l 317 (379)
T 4h09_A 312 LSSVTL 317 (379)
T ss_dssp CCEEEC
T ss_pred CCEEEc
Confidence 776654
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.23 E-value=0.27 Score=43.30 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=36.1
Q ss_pred ccCCCcEEeecCC-Ccc-----ccccccccCCcCcEEEcccccccc-----ccCCcccCCCccceeecCCCC
Q 007616 165 ELKHLRYLDFSHT-AIE-----VLSESVSTLYNLQTLILEYCYRLK-----KLFPDIGNLVNLRHLKDSHSN 225 (596)
Q Consensus 165 ~l~~L~~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~ 225 (596)
.-+.|+.|+|+++ .|. .+-..+..-..|+.|+|++| .++ .+-+.+..-+.|++|+|++|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3456777777764 554 23445555667777777777 333 222223345677777777776
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.92 E-value=1.4 Score=38.65 Aligned_cols=66 Identities=23% Similarity=0.231 Sum_probs=48.7
Q ss_pred CcccccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEcccccccc-----ccCCcccCCCccceeecCCCC
Q 007616 159 LPNDIAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRLK-----KLFPDIGNLVNLRHLKDSHSN 225 (596)
Q Consensus 159 lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~ 225 (596)
+-..+..-+.|+.|+|++|.|. .+...+..-+.|++|+|++| .++ .+-+.+..-+.|++|+++++.
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 4455566678999999999987 34556667789999999999 554 233345556779999998653
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=29.32 E-value=9.4 Score=36.25 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=42.9
Q ss_pred hHHHHHHhhhhhhhhHHHHHHhHhccCCCCc-----------ccCHHhHHH----HHHHcCCCCCCCCCCCHHHHHHHHH
Q 007616 17 GFRGALGVSYYCLLSYVKRCFAYCSFLPKGY-----------RFDERQIVL----LWMAEGLLQHETYGKQMEEFGRKSF 81 (596)
Q Consensus 17 ~i~~~L~lSY~~L~~~lk~cfl~~a~fpe~~-----------~i~~~~Li~----~wi~~g~~~~~~~~~~~~~~~~~~~ 81 (596)
.+...+..++..++...+..+...+....+- .|++..+.+ +-+..|++.....+..+.+.|..|+
T Consensus 233 ~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~ 312 (324)
T 1hqc_A 233 EALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHL 312 (324)
T ss_dssp HHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHT
T ss_pred HHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHH
Confidence 3444445556667766667666654332222 234333333 4677888876556677788888888
Q ss_pred H-HHHhCCccce
Q 007616 82 Q-GLHSRSFFQQ 92 (596)
Q Consensus 82 ~-~L~~~~Ll~~ 92 (596)
+ ++++++|+|+
T Consensus 313 ~~~~~~~~~~~~ 324 (324)
T 1hqc_A 313 GYPPPVGPLLEP 324 (324)
T ss_dssp TCCCCC------
T ss_pred hcCCCCCCCCCC
Confidence 7 8888888875
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.75 E-value=1.1e+02 Score=22.89 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=10.2
Q ss_pred CCCCCCCCCeeecCC
Q 007616 530 FVGNLTSLERLELPR 544 (596)
Q Consensus 530 ~~~~l~~L~~L~l~~ 544 (596)
.+.++++|+.+.+.+
T Consensus 38 aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 38 MFSGCTALEKLILTG 52 (100)
T ss_dssp SSTTCTTCCCEEECC
T ss_pred HHhccCCccEEEEcC
Confidence 456677777777765
Done!