BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007618
         (596 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V27|A Chain A, Structure Of The Cold Active Phenylalanine Hydroxylase
           From Colwellia Psychrerythraea 34h
 pdb|2V27|B Chain B, Structure Of The Cold Active Phenylalanine Hydroxylase
           From Colwellia Psychrerythraea 34h
          Length = 275

 Score = 33.5 bits (75), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 439 ASGTYHL--LPSGKGFTEWELD-------VLSRQFACFNLHSCATTLGSLSRLVQSLPRM 489
           A GT ++  +P   GF EW  +       + +RQ AC    +C      L++L     R+
Sbjct: 2   AKGTKYVSKVPDEHGFIEWSTEENLIWQELFTRQIACIKDKACDEYHEGLAKLNLPTDRI 61

Query: 490 IIMDEIGKLVQFS 502
             +DE+ K+++ S
Sbjct: 62  PQLDEVSKVLKVS 74


>pdb|2V28|A Chain A, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
           From Colwellia Psychrerythraea 34h
 pdb|2V28|B Chain B, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
           From Colwellia Psychrerythraea 34h
          Length = 267

 Score = 33.5 bits (75), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 439 ASGTYHL--LPSGKGFTEWELD-------VLSRQFACFNLHSCATTLGSLSRLVQSLPRM 489
           A GT ++  +P   GF EW  +       + +RQ AC    +C      L++L     R+
Sbjct: 2   AKGTKYVSKVPDEHGFIEWSTEENLIWQELFTRQIACIKDKACDEYHEGLAKLNLPTDRI 61

Query: 490 IIMDEIGKLVQFS 502
             +DE+ K+++ S
Sbjct: 62  PQLDEVSKVLKVS 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,500,127
Number of Sequences: 62578
Number of extensions: 570071
Number of successful extensions: 1087
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 2
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)