BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007618
(596 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3
Length = 555
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 146/567 (25%), Positives = 250/567 (44%), Gaps = 69/567 (12%)
Query: 32 KRLVLTLSVLFSLVLGFPFLWKSVEIYRSSLPFGEISEMESNPSLSFPCRFQAVFINFNS 91
KR L + + ++VLG P WK+ E YR+SLP+ +IS +
Sbjct: 17 KRAALFFAAV-AIVLGLPLWWKTTETYRASLPYSQISGL--------------------- 54
Query: 92 NPSPNHLQLSILDKITELTSNSSQCGACANDLALSVTVDSISSCTQTHPTDNSNYYRCGA 151
N LQL ++ +T + + S L +V + + P +C
Sbjct: 55 ----NALQLRLMVPVTVVFTRESVPLDDQEKLPFTVVHE------REIPLKYKMKIKCRF 104
Query: 152 ISAVDFDFSNDDDD-----------GVDELLESVLGVKNVYSVVVVNGG-GEGIRAVVGK 199
A ++++ +DE E G VY + + + + + +G
Sbjct: 105 QKAYRRALDHEEEALSSGSVQEAEAMLDEPQEQAEGSLTVYVISEHSSLLPQDMMSYIGP 164
Query: 200 YRHAWIVGSVEEEEEESVLVSRVAEIFVKM----------FVNGGTENGLIHGEFMPVGA 249
R A +V + E +++ R+ ++ M + E+ + P+ +
Sbjct: 165 KRTA-VVRGIMHREAFNIIGRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEKRRPLKS 223
Query: 250 DRRIVLSFNLLNAEPNDWVYDWDFQRVDETLLAPIIKVLGPIANISVESQVLYHTPKSSF 309
++F+LLN +P WD + + P + LG N SV+SQ+LY+
Sbjct: 224 SLGYEITFSLLNPDPKSHDVYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVN 283
Query: 310 SYWDEKWKSYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLLP 369
+D SY LP +N E L +S A +L F++YVP PL +
Sbjct: 284 PRFDSASSSYYLDMHSLPHVINPVESRLGSS--AASLYPVLNFLLYVPELAHSPLYIQDK 341
Query: 370 TGEISKTNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSRE-DLQAVFEVFMGQFRQLF 428
G TN F SP WGG++V+N ++S+T + S + E D+ V EVF+ Q R LF
Sbjct: 342 DGAPVATNAFHSPRWGGIMVYN----VDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLF 397
Query: 429 GLKSNNLYIGA--SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSL 486
G+ L SG P+ +G WELD L + NL + TTL SL++L+ +
Sbjct: 398 GIAQPQLPPKCLLSG-----PTSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKI 452
Query: 487 PRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISY 546
++I D++ V ++ A + + + G S+ V+S +A + +E AFF PS++ + Y
Sbjct: 453 SNIVIKDDVASEVYKAVAAVQKSAEELASGHLASAFVASQEAVTSSELAFFDPSLLHLLY 512
Query: 547 YSFEHCFAIYSPFFLPVSMHVLLAALR 573
+ + FAIY P FLP+++ +LL+ ++
Sbjct: 513 FPDDQKFAIYIPLFLPMAVPILLSLVK 539
>sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2
SV=3
Length = 555
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 12/321 (3%)
Query: 255 LSFNLLNAEPNDWVYDWDFQRVDETLLAPIIKVLGPIANISVESQVLYHTPKSSFSYWDE 314
++F+LLN +P WD + + + P + L N SV+SQ+LY+ +D
Sbjct: 229 ITFSLLNPDPKSHDVHWDIEEGVQRYVQPFLNRLSAAGNFSVDSQILYYAMLGVNPRFDP 288
Query: 315 KWKSYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLLPTGEIS 374
SY + LP +N E L +S A +L F++YVP PL + G
Sbjct: 289 ASSSYSLAMHSLPHVINPVESRLGSS--AASLYPVLNFLLYVPELAHSPLYIQDKDGAPV 346
Query: 375 KTNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGLKSNN 434
TN F SP WGG++V+N + + + P R + D+ V EVF+ Q R LFG+
Sbjct: 347 ATNAFHSPRWGGIMVYNVDPKIYNASELPVRVEV---DMAQVMEVFLAQLRLLFGIAQPQ 403
Query: 435 LYIGA--SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIM 492
+ SG P +G WELD L + NL + TTL SL++L+ + ++I
Sbjct: 404 VPPKCLLSG-----PKSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIK 458
Query: 493 DEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHC 552
D++ V ++ A + A +LG S+ +S +A + +E AFF PS++ + Y+ +
Sbjct: 459 DDVASEVYRAVAAVQKAAEALALGHLSSAFAASQEAVTSSERAFFDPSLLHLLYFPDDQK 518
Query: 553 FAIYSPFFLPVSMHVLLAALR 573
FAIY P FLP+++ +LL+ ++
Sbjct: 519 FAIYIPLFLPMAVPILLSLVK 539
Score = 36.6 bits (83), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 32 KRLVLTLSVLFSLVLGFPFLWKSVEIYRSSLPFGEIS 68
KR L + + +++LG P WK+ E YR+ LP+ EIS
Sbjct: 17 KRAALFFAAV-AILLGLPLWWKTTETYRAPLPYSEIS 52
>sp|Q3SZL5|PIGS_BOVIN GPI transamidase component PIG-S OS=Bos taurus GN=PIGS PE=2 SV=3
Length = 555
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 157/320 (49%), Gaps = 10/320 (3%)
Query: 255 LSFNLLNAEPNDWVYDWDFQRVDETLLAPIIKVLGPIANISVESQVLYHTPKSSFSYWDE 314
++F+LLN +P WD + + P + L N SV+SQ+LY+ +D
Sbjct: 229 ITFSLLNPDPKSHDVHWDIEGAVRRYVQPFLSALSAAGNFSVDSQILYYAVLGVNPRFDS 288
Query: 315 KWKSYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLLPTGEIS 374
SY + LP +N E L +S A +L F++YVP PL + G
Sbjct: 289 ASSSYYLAAHSLPHVINPVESRLGSS--AASLYPVLNFLLYVPELAHSPLYIQDKDGAPV 346
Query: 375 KTNGFISPMWGGVVVWN-PPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGLKSN 433
TN F SP WGG++V+N P N + P R + D+ V EVF+ Q R LFG+
Sbjct: 347 ATNAFHSPRWGGIMVYNVDPKAYNG-SQLPVRVEV---DMMRVMEVFLAQLRLLFGIAQP 402
Query: 434 NLYIGASGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMD 493
L P +G WELD L + NL + TTL SL++L+ + ++I D
Sbjct: 403 QL---PPKCLFFGPKSEGIMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKD 459
Query: 494 EIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCF 553
++ V ++ A + A S G S+ +S +A + +E AFF PS++ + Y+ + F
Sbjct: 460 DVASEVYRAVAAVQKAAEELSSGHLASAFAASQEAVTSSERAFFDPSLLHLLYFPDDQKF 519
Query: 554 AIYSPFFLPVSMHVLLAALR 573
AIY P FLP+++ +LL+ +
Sbjct: 520 AIYIPLFLPMAVPILLSLFK 539
Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 44 LVLGFPFLWKSVEIYRSSLPFGEISEMES 72
+VLG P WK+ E YR+ LP+ +IS + S
Sbjct: 28 IVLGLPLWWKTTETYRAPLPYSQISGLNS 56
>sp|Q6PD26|PIGS_MOUSE GPI transamidase component PIG-S OS=Mus musculus GN=Pigs PE=1 SV=3
Length = 555
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 18/343 (5%)
Query: 255 LSFNLLNAEPNDWVYDWDFQRVDETLLAPIIKVLGPIANISVESQVLYHTPKSSFSYWDE 314
++F+LLN +P WD + + + P + L N SV+SQ+LY+ +D
Sbjct: 229 ITFSLLNPDPKSHDVHWDIEGAVQRFVQPFLNRLSVAGNFSVDSQILYYAMLGVNPRFDP 288
Query: 315 KWKSYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLLPTGEIS 374
SY + LP +N E L +S A +L F++YVP PL + G
Sbjct: 289 ASSSYSLAMHSLPHVINPVESRLGSS--AASLYPVLHFLLYVPELAHSPLYIQDKDGAPV 346
Query: 375 KTNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGLKSNN 434
TN F SP WGG++V+N + + + P R + D+ V EVF+ Q R LFG+
Sbjct: 347 ATNAFHSPRWGGIMVYNVDPKIYNASELPVRVEV---DMVRVMEVFLAQLRLLFGIAQPQ 403
Query: 435 LYIGA--SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIM 492
+ SG P +G WELD L + NL + TTL SL++L+ + ++I
Sbjct: 404 VPPKCLLSG-----PKSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIK 458
Query: 493 DEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHC 552
D++ V ++ A + A +LG S+ +S +A + +E AFF PS++ + Y+ +
Sbjct: 459 DDVASEVYRAVAAVQKAAKALALGHLSSAFAASQEAVTSSERAFFDPSLLHLLYFPDDQK 518
Query: 553 FAIYSPFFLPVSMHVLLAALREWKRYKQEKAKYTAWKAKVKVE 595
FAIY P FLP+++ +LL+ ++ ++ ++ +WK K++
Sbjct: 519 FAIYIPLFLPMAVPILLSLVKIFQETRK------SWKKPEKID 555
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 43 SLVLGFPFLWKSVEIYRSSLPFGEISEMES 72
+++LG P WK+ E YR+ LP+ +IS + +
Sbjct: 27 AILLGLPLWWKTTETYRAPLPYSDISGLNA 56
>sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=gpi17 PE=3 SV=1
Length = 554
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 137/575 (23%), Positives = 235/575 (40%), Gaps = 100/575 (17%)
Query: 19 VDPNSTRITKP--GVKRLVLTLSVLFSLVLGFPFLWKSVEIYRSSLPFGEISEMESNPS- 75
V+ ++ ++ KP +KR L LS ++L P WK+ RSSLPF +ME+ PS
Sbjct: 57 VERSNFQLNKPEKSLKRYAL-LSFYVIILLAIPVWWKTTHYERSSLPF---EDMENAPST 112
Query: 76 LSFPCRFQAVFINFNSNPSPNHLQLSILDKITELTSNSSQCGACANDLALSVTVDSISSC 135
+ RF F ILD + Q A S + +
Sbjct: 113 VQTHLRFSPTF--------------RILDDKGNNLTKEVQKVLEAEPQIYSYNLKVL--- 155
Query: 136 TQTHPTDNSNYYRCGAISAVDFDFSNDDDDGVDELLESVLGVKNVYSVVVVNGGGEG--- 192
+ P D YR + D + D+++ + +++ + ++++VN E
Sbjct: 156 -EDDPVD----YRIVLRESTDLQWFWDENNFI---IDTPSKGPSELAILIVNCLWEAFSP 207
Query: 193 -IRAVVGKY-RHAWIVGSVEEEEEESVLVSRVAEIFVKMFVNGGTENGLIHGEFMPVGAD 250
+ V K+ R + V E + +V S + + + V G
Sbjct: 208 QVMEVWSKFTRFSSTVEPSRAETKRTVQFSPQYRVLLSLLVGEG---------------- 251
Query: 251 RRIVLSFNLLNAEPNDWVYDWDFQRVDETLLAPIIKVLGPIANISVESQVLYHTPKSSFS 310
N EP +WD + + P+I+ L +A +++E+Q+ Y +
Sbjct: 252 ----------NHEP----INWDIENAIQKYFNPLIEQLASLAKLNIETQIQYFVEDAEAY 297
Query: 311 YWDEKWKSYIFSTK--DLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLL 368
D+K F TK DLP VN+ E +L S + R + FV+YVPS + PL L
Sbjct: 298 IKDDK-----FCTKHADLPNLVNNFEKYL--SFSPHIREPTIHFVLYVPSPQIQPLWLEN 350
Query: 369 PTGEISKTNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLF 428
I TN + P WG + N N + + DL+ F V L
Sbjct: 351 EDSNIIPTNSMLLPQWGSITTIN--------FNVTEKKLLHDVDLKDYFRVISRDLLLLL 402
Query: 429 GLKSNNLYIGA-SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLP 487
G+ N++ + + S T D L RQ + + TL +L++LV S+
Sbjct: 403 GI--NDVPVSSLSATLA-------------DRLLRQRIAESCIEASDTLQNLAKLVHSMQ 447
Query: 488 RMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYY 547
M + EI V+ +L + +A S + + S A S +++A FHPS+++ Y+
Sbjct: 448 SMAVPKEIQMYVKDTLLSLDMAYKALSQNNLNEALSYSNNAFSKSQEALFHPSMVTTIYF 507
Query: 548 SFEHCFAIYSPFFLPVSMHVLLAALREWKRYKQEK 582
E + IY+P F P+ + +L++ ++E K +E+
Sbjct: 508 PDESKYGIYAPLFAPILIPLLISFIKEVKDMLRER 542
>sp|Q04080|GPI17_YEAST GPI transamidase component GPI17 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GPI17 PE=1 SV=1
Length = 534
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 143/366 (39%), Gaps = 51/366 (13%)
Query: 247 VGADRRIVLSFNLLNAEPNDWVYDWDFQRVDETLLAPIIKVLGPIANISVESQVLYHTPK 306
+ D I LS LL+ + N W+ + +P K L P+ N +V+S ++YH
Sbjct: 184 ISYDPNIHLSVTLLSGDGNPVA--WEIEPTLTDYFSPFRKFLSPLVNFTVDSSIVYHN-- 239
Query: 307 SSFSYWDEKWKSYIFSTKDLPFFVNSNEWHLD--TSIAAGGRSKILQFVVYVPSAKECPL 364
D S S + +F S+ L +S+A L + PSA P
Sbjct: 240 ------DLNLHSLNGSCTSVTWFDLSHTIDLSELSSMAYYPEDSALNLAIVFPSASSSPD 293
Query: 365 SLLLPTG-----EISKT--NGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVF 417
L G EI+ N ++ P WG +++ P NS +S + L+ +
Sbjct: 294 GLAFINGTRISDEITTLDWNSYLVPQWGVIIINKMPLKPNS--------VISEDYLEPMM 345
Query: 418 EVFMGQFRQLFGLKSNNLYIGASGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLG 477
F QL GL G+ LL +D R NL TL
Sbjct: 346 YRFATDIFQLLGL--------TEGSQDLLSPYIT-----IDSFKRLTILQNLDKATETLW 392
Query: 478 SLSRLVQ-----SLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGD---NESSAVSSGQAR 529
SL +L Q S+PR + D + + + L+ L GD N + +S+ +
Sbjct: 393 SLVKLTQQFQGMSIPREV-SDNVIEALDLRLQIIDLLNDPGKGGDIVWNNALHLSNELVK 451
Query: 530 SLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVSMHVLLAALREWKRYKQEKAKYTAWK 589
L E AFF+ ++ +++ EH A+Y P P+S V+ + K +K+K +
Sbjct: 452 -LCEKAFFNGEMVQQNFFPQEHMIAVYLPLLGPISA-VMFFGFYNVMKEKNQKSKKNGTE 509
Query: 590 AKVKVE 595
+V E
Sbjct: 510 REVAKE 515
>sp|B3L4K9|RTCB_PLAKH tRNA-splicing ligase RtcB homolog OS=Plasmodium knowlesi (strain H)
GN=PKH_090290 PE=3 SV=1
Length = 511
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 412 DLQAVFEVFMGQFRQLFGLKSNN-----LYIGASGTYH------LLPSGKGFTEWELDVL 460
++Q V E++ + +L G++ N ++ G+ G H L+ K T++++DV+
Sbjct: 236 EIQIVDEIYDKRSAKLMGIEKKNQVCIMIHSGSRGLGHQIATDALIEMEKSMTKYKIDVI 295
Query: 461 SRQFACFNLHS 471
+Q AC +HS
Sbjct: 296 DKQLACTPIHS 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,504,972
Number of Sequences: 539616
Number of extensions: 9414307
Number of successful extensions: 21826
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 21797
Number of HSP's gapped (non-prelim): 22
length of query: 596
length of database: 191,569,459
effective HSP length: 123
effective length of query: 473
effective length of database: 125,196,691
effective search space: 59218034843
effective search space used: 59218034843
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)