Query 007618
Match_columns 596
No_of_seqs 147 out of 214
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 13:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10510 PIG-S: Phosphatidylin 100.0 3E-113 6E-118 950.6 43.8 511 37-584 1-517 (517)
2 KOG2459 GPI transamidase compl 100.0 4E-102 8E-107 828.4 35.6 532 16-584 2-535 (536)
3 PF07297 DPM2: Dolichol phosph 88.9 0.11 2.4E-06 44.3 -0.3 50 534-584 28-77 (78)
4 PF12527 DUF3727: Protein of u 41.9 13 0.00028 33.3 1.1 14 546-559 49-62 (100)
5 PF05168 HEPN: HEPN domain; I 26.2 1.5E+02 0.0031 25.6 5.3 55 496-553 2-56 (118)
6 PF09259 Fve: Fungal immunomod 25.9 79 0.0017 28.0 3.3 49 318-384 63-111 (111)
7 COG2250 Uncharacterized conser 23.6 1.9E+02 0.0042 26.9 5.8 41 496-536 7-47 (132)
8 PF05752 Calici_MSP: Calicivir 21.4 2.2E+02 0.0048 27.9 5.7 41 469-509 4-44 (167)
9 PRK00888 ftsB cell division pr 19.8 67 0.0015 28.9 1.8 25 33-57 2-26 (105)
10 PF12862 Apc5: Anaphase-promot 19.8 5.6E+02 0.012 21.8 7.7 63 467-535 12-74 (94)
No 1
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=100.00 E-value=2.8e-113 Score=950.56 Aligned_cols=511 Identities=34% Similarity=0.559 Sum_probs=415.9
Q ss_pred hHHHHHHHHHhhhhhhhccceeecCCChhHHhhcccCCCC--CCCceeEEEEEecCCCCCchhHHHHHHHHHhhhhcCCc
Q 007618 37 TLSVLFSLVLGFPFLWKSVEIYRSSLPFGEISEMESNPSL--SFPCRFQAVFINFNSNPSPNHLQLSILDKITELTSNSS 114 (596)
Q Consensus 37 ~~~~~~~~llG~PlWwktT~iyRa~LP~~~I~~L~~~~~~--~~~~~i~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 114 (596)
++|+++++++|+|+|||||+||||+||+++|++|++..+. .++|+|++++.....++....++.++++.+++.. ...
T Consensus 1 Ls~~~v~illG~PlWwkTT~iyRa~LP~~~I~~l~~~~~~~i~~~i~v~v~~~~~~~~~~~~~L~~~v~~~l~~~~-~~~ 79 (517)
T PF10510_consen 1 LSFWLVVILLGLPLWWKTTSIYRAPLPYDEIESLSDRKSCPIHFPIPVYVVSPSYFFPDDAESLQREVQHALDDLN-KKS 79 (517)
T ss_pred CcHHHHHHHHhHHHHHhccceEecCCCHHHHHHhhhcccCCcceeeEEEEEecCCCCHHHHHHHHHHHHHHhhccc-ccC
Confidence 3678899999999999999999999999999999977543 4455443333321123334555555555555433 111
Q ss_pred cCCCCCCcceEEEEEecCCccccCCCCCCCCccccccccccccCCCCCCCchhhHhhhhhcCCCcEEEEEEEcCC----C
Q 007618 115 QCGACANDLALSVTVDSISSCTQTHPTDNSNYYRCGAISAVDFDFSNDDDDGVDELLESVLGVKNVYSVVVVNGG----G 190 (596)
Q Consensus 115 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ld~~~~~~~~~~~~~~vv~~~~~----~ 190 (596)
..+|++++.......|..+. .....+.|..+.. .+...+++.+...+....++++++++. +
T Consensus 80 -----~~~~~l~v~~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (517)
T PF10510_consen 80 -----FSNWSLQVKLYDESIDAEEA--ISESSAECLVLRV--------VPEELDEFSSYQLSPDSKETVVVYSPNSVPSP 144 (517)
T ss_pred -----CceEEEEEEeccCCcchhhh--ccccchhhccccc--------ccccccccccccccCCCceEEEEECchhccCC
Confidence 24899999999876654332 1112222221111 234445555566666677777777543 3
Q ss_pred CcceEEecccceEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCccccccCCcccccCCCCcEEEEEEEecCCCCCcccc
Q 007618 191 EGIRAVVGKYRHAWIVGSVEEEEEESVLVSRVAEIFVKMFVNGGTENGLIHGEFMPVGADRRIVLSFNLLNAEPNDWVYD 270 (596)
Q Consensus 191 ~~~~~vvg~~r~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y~LsFSLLn~dp~~~~v~ 270 (596)
+.++.++|+++++|++.. ......+.+.+.+.+.+... .....|+++|+++|||+|||||+||+.+.++
T Consensus 145 ~~~~~~l~~~i~~~l~e~---------~~~~e~~~l~~~~~~~~~~~--~~~~~r~~~~s~~y~L~fSLLn~dp~~~~~~ 213 (517)
T PF10510_consen 145 DTSSSVLGKFIAAWLVEE---------VFKEEWARLSQILSSSSDSE--DKINSRSVPYSPNYHLSFSLLNPDPSSHPVS 213 (517)
T ss_pred CcchhhHHHHHHHHHHHH---------HHHHHHHHHHHHhccCCccc--cccccccccCCCceEEEEEEECCCCCcCcCc
Confidence 457789999999988832 22222333334332222211 2333589999999999999999999977799
Q ss_pred cccHHHHHHhHHHHHHHhCCcceeEEEeeeEEecCCCCCcccccccceeeeecCCCCcccccCCccccccccCCCCCcee
Q 007618 271 WDFQRVDETLLAPIIKVLGPIANISVESQVLYHTPKSSFSYWDEKWKSYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKIL 350 (596)
Q Consensus 271 Wdie~~~~~yl~P~l~~Ls~iaNFtV~SQVly~~~l~~~~~~d~~~~~~~l~~~~L~~fIN~~Ew~L~ss~s~~~~~p~L 350 (596)
|||++++++||+||+++|++++||||+|||+||+++...+.++++.++|+|+.++|++|||++||+|+++++ ..|+|
T Consensus 214 Wdi~~~i~~yl~P~l~~Ls~i~nftV~SQv~yya~l~~~~~~~~~~~~~~l~~~~Ls~fin~~ew~L~~~~~---~~p~l 290 (517)
T PF10510_consen 214 WDIESAIEEYLQPFLDSLSPIANFTVDSQVLYYAPLSVQPRWDEDSSSYYLSEEDLSHFINSAEWSLDSSIS---NDPTL 290 (517)
T ss_pred CchHHHHHHHHHHHHHHhccceeeEEEEeEEeecCCCCCccccCCCCceeecHHHcccccCHhhcCCCCCCC---CCCeE
Confidence 999999999999999999999999999999999999998999988899999999999999999999999965 58999
Q ss_pred EEEEEecCCCCCCceeeCCCCCccccceEEeccceEEEEECCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHhCC
Q 007618 351 QFVVYVPSAKECPLSLLLPTGEISKTNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGL 430 (596)
Q Consensus 351 nFvvyvPs~~~~PL~I~~~~g~~s~tnSFl~PqWGGV~I~N~~~~~~~~~~~~~~~~ls~~~L~~vm~~F~~qLr~LLGl 430 (596)
||+||||+++++||+|++++|+.+.+|||++||||||+|+|++ |... ..+...++++++|.++|++|++|||+|||+
T Consensus 291 nfvlyvP~~~~~PL~i~~~~g~~~~~nsfliPqWGgv~I~N~~-~~~~--~~~~~~~~~~~~l~~im~~F~~qL~~LLGl 367 (517)
T PF10510_consen 291 NFVLYVPSCEHSPLYIQDSDGSPSSTNSFLIPQWGGVVILNPP-CSVS--NNSSNPVLSEEDLQPIMETFLSQLRQLLGL 367 (517)
T ss_pred EEEEEecCcccCCceEeCCCCCccccceEeeCCcceEEEECCc-cccc--cCCCCccccHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999888999999999999999999 4311 123456789999999999999999999999
Q ss_pred CCCCCcCCCCCcccccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHH
Q 007618 431 KSNNLYIGASGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQ 510 (596)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~g~~~wElD~L~R~rt~enl~~a~~TL~SL~kL~~~i~nm~I~d~V~~~V~~al~~i~~a~ 510 (596)
++.+...+... .+...|+++||+|+|+|+|+++|+++|++||+||+||+++||||+|||+|+++|+.|++++++++
T Consensus 368 ~~~~~~~~~~~----~~~~~~~~~~eld~l~r~r~~~~l~~a~~TL~SL~~L~~~i~~i~I~~~V~~~v~~al~~l~~a~ 443 (517)
T PF10510_consen 368 PSSPSSSGVTV----EPSSTGSPPWELDSLLRRRTVENLASASSTLQSLAKLLDSIPNIVIPDEVAERVQQALEALEQAI 443 (517)
T ss_pred CCCCccccccc----cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99876544432 23668999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCchhHHHHHHHHHHHHHHhcCCccccccccCCccceeEEEecchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007618 511 SNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVSMHVLLAALREWKRYKQEKAK 584 (596)
Q Consensus 511 ~~~~~g~~~~al~~ar~A~~~SE~AFFDpsml~llYFPdEhK~AVYlPLf~Pv~vPlllslire~k~~~~~r~~ 584 (596)
+.++.|+++.|+.+||+|+.+||+||||||||+|+|||||||||||+|||||+++|+++|++||+|+||++|+|
T Consensus 444 ~~l~~~~~~~al~~a~~a~~~ae~AFfd~sml~~lyFP~EhK~AVY~PLf~Pi~~pl~~~~~~~~k~~~~~rk~ 517 (517)
T PF10510_consen 444 DALNNGDLEEALAHAREAFALAERAFFDPSMLQQLYFPDEHKYAVYLPLFGPISVPLLLGLLKELKEWRKRRKE 517 (517)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhCCHhhhhhccCChhheeEeeehhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>KOG2459 consensus GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-102 Score=828.45 Aligned_cols=532 Identities=30% Similarity=0.386 Sum_probs=419.3
Q ss_pred CCCCCCCCcccCCCceeeehhhHHHHHHHHHhhhhhhhccceeecCCChhHHhhcccCCCCCCCceeEEEEEecCCCCCc
Q 007618 16 PSHVDPNSTRITKPGVKRLVLTLSVLFSLVLGFPFLWKSVEIYRSSLPFGEISEMESNPSLSFPCRFQAVFINFNSNPSP 95 (596)
Q Consensus 16 ~~~~~~~~~~~~~~~~rrl~~~~~~~~~~llG~PlWwktT~iyRa~LP~~~I~~L~~~~~~~~~~~i~~v~~~~~~~~~~ 95 (596)
++.++..++++.++|+++. ++++++++++|+|+|||||++||++||+.+|++|+++. .+++..+ |||+.+...+.
T Consensus 2 t~~~~~~~~~~~~~gk~a~--~~f~~v~fflg~p~w~k~ts~yr~slp~~~i~~~~~~~-~~~~li~-pV~v~~~~~~~- 76 (536)
T KOG2459|consen 2 TPSFINYTMSERPYGKAAS--FSFVAVVFFLGVPLWWKTTSTYRSSLPTFPISSLQSIT-VPIRLIF-PVYVEFLRYDV- 76 (536)
T ss_pred CchhhhHHHhccchhhhhh--hHHHHHHHHhcchhhhhhhhhhhccCCCccccchhhcc-ccceEEE-EEEEeeccccC-
Confidence 4667888999999988775 45666777799999999999999999999999999444 6666655 78887765433
Q ss_pred hhHHHHHHHHHhhhhcCCccC-CCCCCcceEEEEEecCCccccCCCCCCCCccccccccccccCCCCCCCc-hhhHhhhh
Q 007618 96 NHLQLSILDKITELTSNSSQC-GACANDLALSVTVDSISSCTQTHPTDNSNYYRCGAISAVDFDFSNDDDD-GVDELLES 173 (596)
Q Consensus 96 ~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ld~~~~~ 173 (596)
+.+.++++...+...+.. +| -..+..|.+|...+.... .....+.++.|+|+.+.-.....+-++.+ ..|...+.
T Consensus 77 ~~l~~~i~~~~~~~e~~s-p~~~~~~~~~~~q~~~~~~~d--~~i~~~~~~~~~~~vv~l~e~~~~~~~~~~l~~~~~~~ 153 (536)
T KOG2459|consen 77 PLLMNEIQVNTTHLERSS-PLFTWTTQPITLQSFERLEQD--HSIEIEESKSFQDVVVKLVEEEEQTHGYATLIDLGIGK 153 (536)
T ss_pred ccccchheeccchhhhcc-ccccccccceeeeehhhhCCc--hhHHHhhcCCceeeEEEecccccccCCchhhcccccch
Confidence 455666665555554422 22 012246677766542211 00112344778877773321110001111 11222222
Q ss_pred hcCCCcEEEEEEEcCCCCcceEEecccceEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCccccccCCcccccCCCCcE
Q 007618 174 VLGVKNVYSVVVVNGGGEGIRAVVGKYRHAWIVGSVEEEEEESVLVSRVAEIFVKMFVNGGTENGLIHGEFMPVGADRRI 253 (596)
Q Consensus 174 ~~~~~~~~~vv~~~~~~~~~~~vvg~~r~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y 253 (596)
....++.+.++...+....+.-.+ .+||++.... .........++.++.+....+ +.+++....+.+|++++|+|
T Consensus 154 ~~~l~~~~~~v~~~~~~~~~~d~~---~~a~i~i~~~-~~~~~~~~~~~~~~w~~~~~~-~t~E~~~a~~~~p~~~~~~y 228 (536)
T KOG2459|consen 154 SSFLQWPTKLVYKQKANTRVTDLV---SEALIDIPHL-NVIVRRDLRQVMEVWQIAALP-LTEEKSSAEDSAPLASDPNY 228 (536)
T ss_pred hhhccCccceEEechhhhcccccc---chhhhccCch-HHHHHHHHHHHHHHHHHHhcc-CCcccccccccCccCCCCCe
Confidence 222335555655543221111111 2677766532 223334555555555555555 66677778889999999999
Q ss_pred EEEEEEecCCCCCcccccccHHHHHHhHHHHHHHhCCcceeEEEeeeEEecCCCCCcccccccceeeeecCCCCcccccC
Q 007618 254 VLSFNLLNAEPNDWVYDWDFQRVDETLLAPIIKVLGPIANISVESQVLYHTPKSSFSYWDEKWKSYIFSTKDLPFFVNSN 333 (596)
Q Consensus 254 ~LsFSLLn~dp~~~~v~Wdie~~~~~yl~P~l~~Ls~iaNFtV~SQVly~~~l~~~~~~d~~~~~~~l~~~~L~~fIN~~ 333 (596)
||+||||||||+.+.++||||+++++|++||+++|++++||||+|||+||++++....+|++..+|+++..+|||+||++
T Consensus 229 ~l~vSlLn~~p~~~p~~Wdie~av~~y~~Pf~~~ls~i~N~tV~SQilY~~~~~~~~~~d~~~s~y~l~~sdLphlvn~~ 308 (536)
T KOG2459|consen 229 HLSVSLLNGNPNITPVSWDIEEAVARYLRPFLEKLSPIANFTVESQILYHVELTRGSLIDDKQSSYALTHSDLPHLVNSV 308 (536)
T ss_pred EEEEEEecCCCCCCcccccHhHHHHHHHHHHHHHhccccceeEEEEEEEeccccccccccchhhhhhcchhhhhhhhhhH
Confidence 99999999999988899999999999999999999999999999999999999888889999999999999999999999
Q ss_pred CccccccccCCCCCceeEEEEEecCCCCCCceeeCCCCCccccceEEeccceEEEEECCCCCCCCCCCCCCccccCHHHH
Q 007618 334 EWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLLPTGEISKTNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDL 413 (596)
Q Consensus 334 Ew~L~ss~s~~~~~p~LnFvvyvPs~~~~PL~I~~~~g~~s~tnSFl~PqWGGV~I~N~~~~~~~~~~~~~~~~ls~~~L 413 (596)
||+|++|.+ +.|+|||+||+||+.++||+|+|+|+++.++|||++||||||+|+|-. ++
T Consensus 309 e~~L~tS~~---~~p~LnfvvyiPs~~~~Pl~l~~~d~t~~dtn~f~sP~WGgiii~N~~------------------~~ 367 (536)
T KOG2459|consen 309 ESQLSTSAQ---RGPALNFVVYIPSASISPLILQDDDDTIEDTNGFLSPQWGGIIIRNEV------------------DT 367 (536)
T ss_pred HHhhccccc---cCceeEEEEEecCcccCCceEECCCCccccccceecCCcceEEeeccc------------------ch
Confidence 999999986 689999999999999999999999999999999999999999999942 55
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCCCCCcccccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccH
Q 007618 414 QAVFEVFMGQFRQLFGLKSNNLYIGASGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMD 493 (596)
Q Consensus 414 ~~vm~~F~~qLr~LLGl~~~~~~~~~~~~~~~~~~~~g~~~wElD~L~R~rt~enl~~a~~TL~SL~kL~~~i~nm~I~d 493 (596)
.++|++|..|||.|||+.+........ ...++..|++.||+|+|+|+|+++|+.+|.+||+||+||+++|+||+|||
T Consensus 368 ~~~~~v~l~qlr~lfg~~se~~~~~~l---~~~~~~~~~~~we~drllr~~~v~nl~~AssTL~SL~kL~~qis~mvI~d 444 (536)
T KOG2459|consen 368 ERSVEVFLAQLRILFGFASELLHLLGL---TEDSPPLGLCQWELDRLLRRRIVENLMTASSTLQSLAKLVQQISNMVIPD 444 (536)
T ss_pred hHHHHHHHHHHHHHhccchhhhhhccc---ccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccH
Confidence 678899999999999998864322111 11345578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCccccccccCCccceeEEEecchhhHHHHHHHHHHH
Q 007618 494 EIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVSMHVLLAALR 573 (596)
Q Consensus 494 ~V~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsml~llYFPdEhK~AVYlPLf~Pv~vPlllslir 573 (596)
||+++|+.|++++.+|++++..|++..|+.+|++|+.+||+||||||||+|+|||||||||||+|||+||++||++++.+
T Consensus 445 EV~~~V~~al~~~~~a~~~l~~g~l~~a~~~s~eA~~lsE~AfFdpSll~~lYFPdEqk~AVYiPLf~PI~vpil~sfy~ 524 (536)
T KOG2459|consen 445 EVADRVTRALAALLQAIDALSPGRLNSALSLSNEARSLSESAFFDPSLLAQLYFPDEQKYAVYIPLFLPIVVPILLSFYE 524 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHhhcCCHHHHHHhhCCchheeEEeehhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 007618 574 EWKRYKQEKAK 584 (596)
Q Consensus 574 e~k~~~~~r~~ 584 (596)
+.|.-.++|++
T Consensus 525 i~k~t~~~rk~ 535 (536)
T KOG2459|consen 525 IAKDTNKRRKL 535 (536)
T ss_pred HHHHHHHhhcC
Confidence 99999998875
No 3
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=88.90 E-value=0.11 Score=44.26 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=35.1
Q ss_pred HhcCCccccccccCCccceeEEEecchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007618 534 DAFFHPSIMSISYYSFEHCFAIYSPFFLPVSMHVLLAALREWKRYKQEKAK 584 (596)
Q Consensus 534 ~AFFDpsml~llYFPdEhK~AVYlPLf~Pv~vPlllslire~k~~~~~r~~ 584 (596)
-=|+|++=.-+.|||+ .+|||++|.++=+..-.++|.+=-.--+|.+|+|
T Consensus 28 lPFvd~d~~i~~~F~P-r~yAi~lP~~lll~~~~~vg~f~g~vmik~~~kk 77 (78)
T PF07297_consen 28 LPFVDEDHPIHSFFPP-REYAIILPIFLLLLGLSGVGTFLGYVMIKSKKKK 77 (78)
T ss_pred hcccCCCchHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4588888777778877 8999999998777666666655444445544443
No 4
>PF12527 DUF3727: Protein of unknown function (DUF3727) ; InterPro: IPR022203 This domain family is found in bacteria and eukaryotes, and is approximately 100 amino acids in length.
Probab=41.85 E-value=13 Score=33.33 Aligned_cols=14 Identities=29% Similarity=0.909 Sum_probs=12.9
Q ss_pred cCCccceeEEEecc
Q 007618 546 YYSFEHCFAIYSPF 559 (596)
Q Consensus 546 YFPdEhK~AVYlPL 559 (596)
||-++|+|+||+||
T Consensus 49 F~~e~~eY~iYtPL 62 (100)
T PF12527_consen 49 FYHEDQEYGIYTPL 62 (100)
T ss_pred EeeCCeEEEEEecC
Confidence 68899999999997
No 5
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=26.23 E-value=1.5e+02 Score=25.59 Aligned_cols=55 Identities=20% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCccccccccCCcccee
Q 007618 496 GKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCF 553 (596)
Q Consensus 496 ~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsml~llYFPdEhK~ 553 (596)
...+..|-+.++.|....+.|.++.+..+|..|...+-+|+.=. .-..+|..|.+
T Consensus 2 ~~~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~lkAll~~---~~~~~~~~h~l 56 (118)
T PF05168_consen 2 QDWLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKALKALLLK---KGGRYPKHHSL 56 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH---TTS--STSSCH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhh---cCCCCCCCCcH
Confidence 45566777777777777788888888889999999999998522 22236777753
No 6
>PF09259 Fve: Fungal immunomodulatory protein Fve; InterPro: IPR015339 This entry represents the FIP-Fve (Fungal Immunomodulatory Protein Fve) is a major fruiting body protein from Flammulina velutipes, a mushroom possessing immunomodulatory activity. It stimulates lymphocyte mitogenesis, suppresses systemic anaphylaxis reactions and oedema, enhances transcription of IL-2, IFN-gamma and TNF-alpha, and haemagglutinates red blood cells. It appears to be a lectin with specificity for complex cell-surface carbohydrates. Fve adopts a tertiary structure consisting of an immunoglobulin-like beta-sandwich, with seven strands arranged in two beta sheets, in a Greek-key topology. It forms a non-covalently linked homodimer containing no Cys, His or Met residues; dimerisation occurs by 3-D domain swapping of the N-terminal helices and is stabilised predominantly by hydrophobic interactions []. ; GO: 0030246 carbohydrate binding, 0002682 regulation of immune system process; PDB: 3KCW_A 1OSY_B 3F3H_B.
Probab=25.92 E-value=79 Score=27.99 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=28.8
Q ss_pred eeeeecCCCCcccccCCccccccccCCCCCceeEEEEEecCCCCCCceeeCCCCCccccceEEeccc
Q 007618 318 SYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLLPTGEISKTNGFISPMW 384 (596)
Q Consensus 318 ~~~l~~~~L~~fIN~~Ew~L~ss~s~~~~~p~LnFvvyvPs~~~~PL~I~~~~g~~s~tnSFl~PqW 384 (596)
+|.+..+- +.=||+.|++-|-.+++ ..+|+..|..|+.. .+.-|++.||
T Consensus 63 syaV~sdG-sQkiNFLeYn~GyGiAD---T~TIQV~VvdPdtg--------------nse~~iiAqW 111 (111)
T PF09259_consen 63 SYAVESDG-SQKINFLEYNSGYGIAD---TNTIQVFVVDPDTG--------------NSEDFIIAQW 111 (111)
T ss_dssp -S-B-TTS--EEEEGGGTTTT--EET---TS-EEEEEE-TTTT--------------T--EEEEEEE
T ss_pred ceeecCCC-CceEeEEEecCCccccc---CceEEEEEEcCCCC--------------CccceEEecC
Confidence 34454444 77889999988877764 57898888877522 1358999999
No 7
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=23.57 E-value=1.9e+02 Score=26.86 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhc
Q 007618 496 GKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAF 536 (596)
Q Consensus 496 ~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AF 536 (596)
..-.++|...+..|...++.|+++.|.-+|.+|+..+-+|-
T Consensus 7 ~~~~~rA~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKal 47 (132)
T COG2250 7 EKWLRRAERDLKLAKRDLELGDYDLACFHAQQAVELALKAL 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 34457788888888888899999888889999999998874
No 8
>PF05752 Calici_MSP: Calicivirus minor structural protein; InterPro: IPR008437 This family consists of minor structural proteins largely from the Caliciviridaei family of viruses, including Sapporo virus (Hu/Chiba/041413/2004/JP) and Sapporo virus (Hu/Ehime/04-1680/2004/JP). These viruses cause gastroenteritis. The function of this family is unknown.
Probab=21.38 E-value=2.2e+02 Score=27.91 Aligned_cols=41 Identities=7% Similarity=0.072 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHH
Q 007618 469 LHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLA 509 (596)
Q Consensus 469 l~~a~~TL~SL~kL~~~i~nm~I~d~V~~~V~~al~~i~~a 509 (596)
+..|..++.+|+.|...|.||+.-....+..+..++..+..
T Consensus 4 ~~GAl~~~G~L~D~AGtIsnIV~qqrqv~~~~~Qn~lqq~w 44 (167)
T PF05752_consen 4 FVGALQGAGSLVDMAGTISNIVAQQRQVDQLEKQNQLQQQW 44 (167)
T ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999888877777777665544
No 9
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=19.80 E-value=67 Score=28.88 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=19.5
Q ss_pred eehhhHHHHHHHHHhhhhhhhccce
Q 007618 33 RLVLTLSVLFSLVLGFPFLWKSVEI 57 (596)
Q Consensus 33 rl~~~~~~~~~~llG~PlWwktT~i 57 (596)
|+++++++++.+++++++||--..+
T Consensus 2 ~~~~~vll~ll~~l~y~l~~g~~G~ 26 (105)
T PRK00888 2 RLLTLLLLALLVWLQYSLWFGKNGI 26 (105)
T ss_pred cHHHHHHHHHHHHHHHHHhccCCcH
Confidence 5667777888899999999965543
No 10
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=19.76 E-value=5.6e+02 Score=21.84 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHh
Q 007618 467 FNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDA 535 (596)
Q Consensus 467 enl~~a~~TL~SL~kL~~~i~nm~I~d~V~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~A 535 (596)
.+..+|.+.|...-....+-.+... ....+...+.++.-....|..+.|+..-++|+..|.+.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4455666666655555443333322 22333344555555567788888888889998888764
Done!