Query 007618
Match_columns 596
No_of_seqs 147 out of 214
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kcw_A Immunomodulatory protei 34.6 29 0.001 30.2 3.4 48 318-385 64-111 (134)
2 1osy_A Immunomodulatory protei 28.3 54 0.0019 27.9 3.9 50 318-385 64-113 (115)
3 3o10_A Sacsin; all-helical dom 28.1 80 0.0027 28.2 5.5 60 492-555 6-66 (141)
4 2hsb_A Hypothetical UPF0332 pr 28.1 82 0.0028 26.9 5.4 57 493-553 3-59 (126)
5 2jqq_A Conserved oligomeric go 27.9 2.6E+02 0.0087 26.8 8.9 70 412-511 51-120 (204)
6 1wol_A ST0689, 122AA long cons 24.2 92 0.0031 26.6 5.0 58 493-554 2-59 (122)
7 1ufb_A TT1696 protein; structu 22.1 98 0.0034 26.5 4.7 58 493-554 2-59 (127)
8 3mst_A Putative nitrate transp 18.1 34 0.0012 33.8 0.8 26 543-571 13-38 (244)
9 1o3u_A Conserved hypothetical 16.7 1.7E+02 0.0057 25.6 5.1 40 498-537 12-51 (135)
10 3dfb_A Metal-binding protein S 15.6 2.2E+02 0.0077 24.1 5.2 39 497-535 5-43 (93)
No 1
>3kcw_A Immunomodulatory protein; FNIII, immune system; 2.00A {Ganoderma microsporum} PDB: 3f3h_A
Probab=34.58 E-value=29 Score=30.16 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=35.0
Q ss_pred eeeeecCCCCcccccCCccccccccCCCCCceeEEEEEecCCCCCCceeeCCCCCccccceEEeccce
Q 007618 318 SYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLLPTGEISKTNGFISPMWG 385 (596)
Q Consensus 318 ~~~l~~~~L~~fIN~~Ew~L~ss~s~~~~~p~LnFvvyvPs~~~~PL~I~~~~g~~s~tnSFl~PqWG 385 (596)
+|.+..+- +.=||+.|++-|-.+++ ..+|+..|..|+ +.|-|++.||.
T Consensus 64 syaV~sdG-sQkiNFLeYn~GyGiAD---T~TIQV~VvdPd----------------tgn~fiiAqWn 111 (134)
T 3kcw_A 64 SYAVESDG-SQKINFLEYNSGYGIAD---TNTIQVYVIDPD----------------TGNNFIVAQWN 111 (134)
T ss_dssp CCCCCTTS-CEEEEGGGTTTTCCEET---TSCEEEEEECTT----------------TCCEEEEEEEC
T ss_pred ceeecCCC-CceEeEEEecCCccccc---CceEEEEEEcCC----------------CCCceEeeehh
Confidence 34444444 77889999988877764 578887777774 23789999995
No 2
>1osy_A Immunomodulatory protein FIP-FVE; fungal protein, fibronectin fold, hemagglutination, lectin, sugar binding protein, immune system; 1.70A {Flammulina velutipes} SCOP: b.1.21.1
Probab=28.31 E-value=54 Score=27.95 Aligned_cols=50 Identities=16% Similarity=0.364 Sum_probs=35.6
Q ss_pred eeeeecCCCCcccccCCccccccccCCCCCceeEEEEEecCCCCCCceeeCCCCCccccceEEeccce
Q 007618 318 SYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLLPTGEISKTNGFISPMWG 385 (596)
Q Consensus 318 ~~~l~~~~L~~fIN~~Ew~L~ss~s~~~~~p~LnFvvyvPs~~~~PL~I~~~~g~~s~tnSFl~PqWG 385 (596)
+|.+..+- +.=||+.|++-|-.+++ ..+|+..|..|+.. .+.-|++.||-
T Consensus 64 syaV~sdG-sQkvNFLeYN~GyGiAD---T~TIQV~VvdPDt~--------------nse~~iiAqW~ 113 (115)
T 1osy_A 64 NFAVTPSG-GQTINFLQYNKGYGVAD---TKTIQVFVVIPDTG--------------NSEEYIIAEWK 113 (115)
T ss_dssp CCCBCTTS-CEEEEGGGTTTTCCEET---TSCEEEEEECSSST--------------TCCEEEEEEEC
T ss_pred ceeecCCC-CceEeEEEecCcccccc---cceEEEEEEcCCCC--------------CchheeEeeec
Confidence 35554444 77889999988877764 57898888777522 13589999994
No 3
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=28.11 E-value=80 Score=28.24 Aligned_cols=60 Identities=12% Similarity=-0.085 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCcccccc-ccCCccceeEE
Q 007618 492 MDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSI-SYYSFEHCFAI 555 (596)
Q Consensus 492 ~d~V~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsml~l-lYFPdEhK~AV 555 (596)
++++..-...|...++.|....+.|.++.|.-+|.+|.+.+-+|+. +.. .++|--|.+.-
T Consensus 6 ~ee~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~Ek~lKa~L----~~~~g~~p~~H~l~~ 66 (141)
T 3o10_A 6 PVEARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTKLALIAAD----YAVRGKSDKDVKPTA 66 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHHHHHHHHH----HHHHSCCCTTSCHHH
T ss_pred hHHHHHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHHHHHHHHH----HHhcCCCcccCCcHH
Confidence 4577777888888888888888889988888899999999999985 333 67899997654
No 4
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=28.09 E-value=82 Score=26.90 Aligned_cols=57 Identities=18% Similarity=0.036 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCccccccccCCcccee
Q 007618 493 DEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCF 553 (596)
Q Consensus 493 d~V~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsml~llYFPdEhK~ 553 (596)
+.+...+..|-+.++.|....+.|.++.|...|..|...|-+|+.= ..-..|.-|..
T Consensus 3 ~~~~~~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~~~alKAlL~----~~g~~~~tH~~ 59 (126)
T 2hsb_A 3 DELELRIRKAEKLVQDAKKEFEMGLYERCCSTAYYAMFHAAKAMLL----GYGRDSKTHRG 59 (126)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH----HTTCCCSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----hCCCCCCCcHH
Confidence 5677888899899988888889999988888888999999888652 12234788873
No 5
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=27.92 E-value=2.6e+02 Score=26.83 Aligned_cols=70 Identities=16% Similarity=0.034 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcCCCCCcccccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccc
Q 007618 412 DLQAVFEVFMGQFRQLFGLKSNNLYIGASGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMII 491 (596)
Q Consensus 412 ~L~~vm~~F~~qLr~LLGl~~~~~~~~~~~~~~~~~~~~g~~~wElD~L~R~rt~enl~~a~~TL~SL~kL~~~i~nm~I 491 (596)
....=+..|..|||+|-.-. -.||-|++..+++=|++|..|...+.|...
T Consensus 51 ~v~~Dl~~F~~QL~qL~~~~------------------------------i~~Tre~v~d~l~YLkkLD~l~~~Lq~h~~ 100 (204)
T 2jqq_A 51 KTQSDLQKFMTQLDHLIKDD------------------------------ISNTQEIIKDVLEYLKKLDEIYGSLRNHSQ 100 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHS------------------------------CSTTHHHHHHHHHHHHHHHHHHHTCSSSSH
T ss_pred HHHHHHHHHHHHHHHHHhhh------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445679999999995321 134678889999999999999999999988
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 007618 492 MDEIGKLVQFSLEAAKLAQS 511 (596)
Q Consensus 492 ~d~V~~~V~~al~~i~~a~~ 511 (596)
-++...--++-...++.+|+
T Consensus 101 Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 101 LTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 77654444443444444443
No 6
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=24.17 E-value=92 Score=26.64 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCccccccccCCccceeE
Q 007618 493 DEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCFA 554 (596)
Q Consensus 493 d~V~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsml~llYFPdEhK~A 554 (596)
+++..-...|.+.++.|....+.|.++.|.-+|.+|...+-+|+.=. .+ .+ |.-|.+.
T Consensus 2 ~~~~~wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek~lKalL~~--~g-~~-p~tH~l~ 59 (122)
T 1wol_A 2 KRVEDWIKQAERDLEEARYAKSGGYYELACFLSQQCAEKAVKGLLQF--QG-IE-KRGHSIS 59 (122)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH--TT-CC-CCSSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH--cC-CC-CCCcCHH
Confidence 35566777888888778777788998888889999999998887632 11 23 7777644
No 7
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=22.12 E-value=98 Score=26.52 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCccccccccCCccceeE
Q 007618 493 DEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCFA 554 (596)
Q Consensus 493 d~V~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsml~llYFPdEhK~A 554 (596)
+++..-...|.+.++.|....+.|.++.|.-+|.+|...+-+|+.=. .+ .+ |.-|.+.
T Consensus 2 ~~~~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~lKalL~~--~g-~~-p~tH~l~ 59 (127)
T 1ufb_A 2 NRARDWLEQARHNLRHAQGSLGLGDYAWACFAAQQAAEAALKGLHLA--RG-QV-AWGHSIL 59 (127)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH--TT-CC-CCSSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH--cC-CC-CCCcCHH
Confidence 45666777887777777777778888888888999999998887632 12 24 7777643
No 8
>3mst_A Putative nitrate transport protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.35A {Thermoplasma volcanium}
Probab=18.06 E-value=34 Score=33.85 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.7
Q ss_pred ccccCCccceeEEEecchhhHHHHHHHHH
Q 007618 543 SISYYSFEHCFAIYSPFFLPVSMHVLLAA 571 (596)
Q Consensus 543 ~llYFPdEhK~AVYlPLf~Pv~vPlllsl 571 (596)
.-||| |.+.|=.|+-||++.|++++-
T Consensus 13 ~~~~~---~~~~i~aP~~GPVSyPli~a~ 38 (244)
T 3mst_A 13 ENLYF---QGMDVGMPFSGPVSFPLLVIE 38 (244)
T ss_dssp GGGSC---TTCCEEECTTSGGGHHHHHTG
T ss_pred cccee---eeeEEecCCCCCccceeEEee
Confidence 34677 678899999999999999863
No 9
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=16.69 E-value=1.7e+02 Score=25.65 Aligned_cols=40 Identities=23% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcC
Q 007618 498 LVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFF 537 (596)
Q Consensus 498 ~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFF 537 (596)
.+..|.+.++.|....+.|.++.|.-+|.+|.+.+-+|+.
T Consensus 12 ~~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~EkalKAlL 51 (135)
T 1o3u_A 12 HMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVF 51 (135)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666788888777888888888888876
No 10
>3dfb_A Metal-binding protein SMBP; four helical bundle, copper, periplasm; 1.90A {Nitrosomonas europaea} PDB: 3u8v_A
Probab=15.60 E-value=2.2e+02 Score=24.06 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHh
Q 007618 497 KLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDA 535 (596)
Q Consensus 497 ~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~A 535 (596)
+.+..|++..+.+......|+....+.+|..|+..|..|
T Consensus 5 ~H~~~AieHa~~Av~hgk~g~a~~l~~HA~~Al~HA~aA 43 (93)
T 3dfb_A 5 AHVDEAVKHAEEAVAHGKEGHTDQLLEHAKESLTHAKAA 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888999999999999999
Done!