Query 007618
Match_columns 596
No_of_seqs 147 out of 214
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 06:17:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007618.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007618hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qsba1 a.29.14.1 (A:2-86) Unc 49.6 25 0.0018 27.4 7.2 60 474-541 6-66 (85)
2 d2qzga1 a.29.14.1 (A:4-91) Unc 40.4 36 0.0026 26.6 6.8 61 473-541 7-68 (88)
3 d1o3ua_ a.24.16.3 (A:) Hypothe 29.8 27 0.002 28.6 4.7 52 498-553 3-54 (126)
4 d1vkua_ a.28.1.1 (A:) Acyl car 22.6 79 0.0058 23.2 6.0 53 407-473 3-55 (85)
5 d1osya_ b.1.21.1 (A:) Fungal i 21.2 42 0.0031 26.4 3.9 50 318-385 63-112 (114)
6 d1ufba_ a.24.16.3 (A:) Hypothe 11.5 1.2E+02 0.0088 24.1 4.7 55 495-553 4-58 (127)
7 d2p6va1 a.277.1.1 (A:582-678) 10.6 2.3E+02 0.017 22.1 5.9 39 464-505 6-44 (97)
8 d1b26a2 c.58.1.1 (A:4-178) Glu 9.8 65 0.0047 28.2 2.4 25 407-431 110-134 (175)
9 d2b5ea2 c.47.1.2 (A:142-239) P 9.8 94 0.0069 24.4 3.1 31 529-559 37-67 (98)
10 d1ayia_ a.28.2.1 (A:) ImmE7 pr 9.7 47 0.0034 25.8 1.2 44 528-583 37-80 (86)
No 1
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=49.62 E-value=25 Score=27.44 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhC-CCccccHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCccc
Q 007618 474 TTLGSLSRLVQSL-PRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSI 541 (596)
Q Consensus 474 ~TL~SL~kL~~~i-~nm~I~d~V~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsm 541 (596)
+.|+..++++++| .+..||..|...+..+.+.+ ..+..+-++ .|..|...=|.-+-||.|
T Consensus 6 ~~l~~~~~~L~~I~~D~sVPRNIRr~a~e~~~~L-------~n~~~~~~v-Raa~ais~LdeIs~DPNm 66 (85)
T d2qsba1 6 NLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKL-------SQENESLDL-RCATVLSMLDEMANDPNV 66 (85)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-------TCTTSCHHH-HHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------HCCCcchhH-HHHHHHHHHHHhhcCCCC
Confidence 3466667777777 89999999999888777663 222223333 466788888999999987
No 2
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=40.43 E-value=36 Score=26.64 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhC-CCccccHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCccc
Q 007618 473 ATTLGSLSRLVQSL-PRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSI 541 (596)
Q Consensus 473 ~~TL~SL~kL~~~i-~nm~I~d~V~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsm 541 (596)
.+.++..+.++++| .+..||..|...+..+.+.+ ..+..+-++ .|..|...=|.-+-||.|
T Consensus 7 ~e~i~~~~~~L~qI~~D~sVPRNIRr~a~~~~~~L-------~n~~~~~~v-Raa~ais~LDeIs~DPNm 68 (88)
T d2qzga1 7 ADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNAL-------HNEEQELIV-RSATAIQYLDDISEDPNM 68 (88)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT-------TCTTSCHHH-HHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------HCCCcchhH-HHHHHHHHHHHhhcCCCC
Confidence 35667777788888 89999999998777665542 333333333 466788888999999987
No 3
>d1o3ua_ a.24.16.3 (A:) Hypothetical protein TM0613 {Thermotoga maritima [TaxId: 2336]}
Probab=29.77 E-value=27 Score=28.56 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCccccccccCCcccee
Q 007618 498 LVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCF 553 (596)
Q Consensus 498 ~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsml~llYFPdEhK~ 553 (596)
++++|-+.++.|....+.|.++.|.-+|.+|++.+-+|++=. .+ -+|--|.+
T Consensus 3 ~l~~A~~dL~~A~~~l~~g~y~~a~f~~qQavEk~lKa~l~~--~g--~~pk~H~l 54 (126)
T d1o3ua_ 3 HMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVFQR--MG--AQAWGYSV 54 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH--HT--CCCCCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHH--cC--CCCCCCCH
Confidence 456777777777777788888888889999999999998632 22 35777764
No 4
>d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]}
Probab=22.58 E-value=79 Score=23.18 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=33.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCcccccCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 007618 407 TMSREDLQAVFEVFMGQFRQLFGLKSNNLYIGASGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCA 473 (596)
Q Consensus 407 ~ls~~~L~~vm~~F~~qLr~LLGl~~~~~~~~~~~~~~~~~~~~g~~~wElD~L~R~rt~enl~~a~ 473 (596)
+++.+++. +....-+...||++..... ....|.+..+|++.....+..+.+..
T Consensus 3 ~m~~~~i~---~~l~~iv~~~l~~~~~~i~-----------~~~~~~dlG~DSl~~v~l~~~ie~~f 55 (85)
T d1vkua_ 3 HMERKKLI---AKFVEIASEKMGKDLETVD-----------EENTFKELGFDSIDVIDLVMFFEDEF 55 (85)
T ss_dssp TTHHHHHH---HHHHHHHHHTTCCCCCSCC-----------TTSBTTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHH---HHHHHHHHHHHCCCHHHCC-----------CCCCHHHhcCcchHHHHHHHHHHHHc
Confidence 45555555 6666677788899865322 12335567789998877776665543
No 5
>d1osya_ b.1.21.1 (A:) Fungal immunomodulatory protein, FIP {Golden needle mushroom (Flammulina velutipes) [TaxId: 38945]}
Probab=21.21 E-value=42 Score=26.36 Aligned_cols=50 Identities=16% Similarity=0.365 Sum_probs=35.4
Q ss_pred eeeeecCCCCcccccCCccccccccCCCCCceeEEEEEecCCCCCCceeeCCCCCccccceEEeccce
Q 007618 318 SYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLSLLLPTGEISKTNGFISPMWG 385 (596)
Q Consensus 318 ~~~l~~~~L~~fIN~~Ew~L~ss~s~~~~~p~LnFvvyvPs~~~~PL~I~~~~g~~s~tnSFl~PqWG 385 (596)
+|.+..+. +.-||+.|++-|-.+++ ..+|+..|..|+... ..-|+|.||-
T Consensus 63 ~~av~~~g-~q~vnfleyn~gygiad---t~tiqvfvv~pdt~n--------------~~d~iiaqwk 112 (114)
T d1osya_ 63 NFAVTPSG-GQTINFLQYNKGYGVAD---TKTIQVFVVIPDTGN--------------SEEYIIAEWK 112 (114)
T ss_dssp CCCBCTTS-CEEEEGGGTTTTCCEET---TSCEEEEEECSSSTT--------------CCEEEEEEEC
T ss_pred ceeecCCC-CceEeEEEecCcccccc---CceEEEEEEcCCCCC--------------chheeeeeee
Confidence 34554444 67789999888877764 578998888885321 2479999994
No 6
>d1ufba_ a.24.16.3 (A:) Hypothetical protein TT1696 {Thermus thermophilus [TaxId: 274]}
Probab=11.54 E-value=1.2e+02 Score=24.13 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhcCCccccccccCCcccee
Q 007618 495 IGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCF 553 (596)
Q Consensus 495 V~~~V~~al~~i~~a~~~~~~g~~~~al~~ar~A~~~SE~AFFDpsml~llYFPdEhK~ 553 (596)
..+-+..|-+.++.|....+.|.++.+.-+|.+|++.+-+|..= ..--+|--|-+
T Consensus 4 a~~Wl~~A~~dL~~A~~~~~~~~y~~a~f~~qQavEk~lKAll~----~~g~~pktH~l 58 (127)
T d1ufba_ 4 ARDWLEQARHNLRHAQGSLGLGDYAWACFAAQQAAEAALKGLHL----ARGQVAWGHSI 58 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH----HTTCCCCSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH----HcCCCCCCCCH
Confidence 44556777777777777777888888888999999999999752 22346888843
No 7
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.63 E-value=2.3e+02 Score=22.09 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHH
Q 007618 464 FACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEA 505 (596)
Q Consensus 464 rt~enl~~a~~TL~SL~kL~~~i~nm~I~d~V~~~V~~al~~ 505 (596)
-+++|+.++..=|..|.+|..+-+ ++.+++++|+.-+..
T Consensus 6 ~~~~nv~Kck~FL~tLi~l~s~~~---~spe~~~~Vr~LV~~ 44 (97)
T d2p6va1 6 ETMENVKKCKNFLSTLIKLASSGK---QSTETAANVKELVQN 44 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSS---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHHH
Confidence 467899999999999999985544 667888888765544
No 8
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=9.83 E-value=65 Score=28.15 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhCCC
Q 007618 407 TMSREDLQAVFEVFMGQFRQLFGLK 431 (596)
Q Consensus 407 ~ls~~~L~~vm~~F~~qLr~LLGl~ 431 (596)
.+++.||+.++..|+..|+.+.|=.
T Consensus 110 ~~s~~Eler~~r~f~~~l~~~iG~~ 134 (175)
T d1b26a2 110 KLSRNELERLSRRFFSEIQVIIGPY 134 (175)
T ss_dssp GSCHHHHHHHHHHHHHHGGGTCBTT
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCC
Confidence 5688999999999999999888854
No 9
>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.76 E-value=94 Score=24.42 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHHHhcCCccccccccCCccceeEEEecc
Q 007618 529 RSLAEDAFFHPSIMSISYYSFEHCFAIYSPF 559 (596)
Q Consensus 529 ~~~SE~AFFDpsml~llYFPdEhK~AVYlPL 559 (596)
++.|+.-|-|=..++..---++.|++||+|=
T Consensus 37 ~~~A~~l~~Dy~Fvs~~~~~~~~kLsV~LP~ 67 (98)
T d2b5ea2 37 YSMANKHFNDYDFVSAENADDDFKLSIYLPS 67 (98)
T ss_dssp HHHHHHTTTTCEEEEEECTTSCCEEEEEETT
T ss_pred HHHHHHhhcceEEEeccCCCCCccEEEECCC
Confidence 5667776767677776666677899999993
No 10
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=9.66 E-value=47 Score=25.85 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCccccccccCCccceeEEEecchhhHHHHHHHHHHHHHHHHHHHHH
Q 007618 528 ARSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVSMHVLLAALREWKRYKQEKA 583 (596)
Q Consensus 528 A~~~SE~AFFDpsml~llYFPdEhK~AVYlPLf~Pv~vPlllslire~k~~~~~r~ 583 (596)
++..=++-==||+---+.|+|.+..=.- | -|+++++|+||+++.
T Consensus 37 l~~hF~~iteHP~gsDLIyYP~~~~eds------P------egI~k~IKeWRa~nG 80 (86)
T d1ayia_ 37 LLEHFVKITEHPDGTDLIYYPSDNRDDS------P------EGIVKEIKEWRAANG 80 (86)
T ss_dssp HHHHHHHHHCCTTTTHHHHSCCTTSCCS------H------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCceeeeCCCCCCCC------H------HHHHHHHHHHHHHcC
Confidence 3444455556999999999998854332 3 477999999998764
Done!