Query 007620
Match_columns 595
No_of_seqs 222 out of 2267
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 13:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01029 tolB translocation pr 99.9 2E-21 4.3E-26 202.2 28.0 238 3-343 163-412 (428)
2 PRK03629 tolB translocation pr 99.9 3.9E-21 8.4E-26 200.8 29.5 236 3-342 177-414 (429)
3 COG1506 DAP2 Dipeptidyl aminop 99.9 2.4E-20 5.3E-25 202.9 36.6 127 433-582 317-445 (620)
4 PRK04043 tolB translocation pr 99.9 6.4E-21 1.4E-25 196.9 28.5 233 3-334 167-402 (419)
5 PRK05137 tolB translocation pr 99.9 6.4E-21 1.4E-25 200.4 28.7 235 4-341 181-419 (435)
6 PRK10115 protease 2; Provision 99.9 1.6E-18 3.4E-23 189.7 40.8 125 436-581 370-495 (686)
7 PRK04792 tolB translocation pr 99.9 1.1E-19 2.3E-24 190.7 29.4 234 4-341 197-432 (448)
8 PRK02889 tolB translocation pr 99.9 1.9E-19 4.2E-24 188.2 28.8 233 5-341 176-410 (427)
9 PRK04922 tolB translocation pr 99.9 3.1E-19 6.7E-24 187.4 28.3 235 4-342 183-419 (433)
10 PRK00178 tolB translocation pr 99.8 5E-19 1.1E-23 186.3 28.7 226 6-333 180-407 (430)
11 PRK01029 tolB translocation pr 99.8 1.2E-18 2.7E-23 181.3 29.5 264 35-413 141-413 (428)
12 PRK05137 tolB translocation pr 99.8 1.8E-18 3.9E-23 181.9 29.4 230 42-373 165-397 (435)
13 PRK03629 tolB translocation pr 99.8 1.1E-17 2.4E-22 174.9 29.7 229 43-373 164-394 (429)
14 PRK01742 tolB translocation pr 99.8 1E-17 2.3E-22 175.5 27.7 228 4-342 183-412 (429)
15 PRK04043 tolB translocation pr 99.8 5.3E-18 1.1E-22 175.3 23.3 207 4-306 212-419 (419)
16 PRK04792 tolB translocation pr 99.8 8.1E-17 1.8E-21 169.0 30.0 230 42-373 182-413 (448)
17 PRK02889 tolB translocation pr 99.8 8E-17 1.7E-21 168.6 29.3 226 43-373 164-391 (427)
18 PRK00178 tolB translocation pr 99.8 9.2E-17 2E-21 169.1 29.6 232 41-373 161-394 (430)
19 PRK04922 tolB translocation pr 99.8 7.1E-17 1.5E-21 169.6 28.6 231 42-373 167-399 (433)
20 PF00930 DPPIV_N: Dipeptidyl p 99.8 3.5E-16 7.7E-21 159.5 25.9 307 2-452 20-353 (353)
21 COG4946 Uncharacterized protei 99.7 2.8E-15 6.1E-20 145.7 29.5 379 5-458 59-521 (668)
22 TIGR02800 propeller_TolB tol-p 99.7 2.6E-15 5.6E-20 157.8 27.8 228 4-333 169-398 (417)
23 PRK01742 tolB translocation pr 99.7 2.3E-14 5E-19 150.3 29.9 245 42-470 168-414 (429)
24 TIGR02800 propeller_TolB tol-p 99.6 1.2E-13 2.5E-18 145.3 29.2 232 39-373 152-385 (417)
25 PF14583 Pectate_lyase22: Olig 99.6 1.2E-12 2.7E-17 128.7 31.9 344 13-460 15-383 (386)
26 COG0823 TolB Periplasmic compo 99.6 8.4E-14 1.8E-18 142.9 23.4 230 4-333 172-403 (425)
27 COG0823 TolB Periplasmic compo 99.6 5.4E-14 1.2E-18 144.3 18.4 167 5-260 218-387 (425)
28 PF00930 DPPIV_N: Dipeptidyl p 99.5 6.6E-12 1.4E-16 128.2 29.2 297 39-471 1-327 (353)
29 KOG2281 Dipeptidyl aminopeptid 99.5 3.5E-11 7.5E-16 122.3 27.1 180 378-586 515-702 (867)
30 PF14583 Pectate_lyase22: Olig 99.3 1.3E-09 2.9E-14 107.5 23.7 300 4-383 59-379 (386)
31 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 6.2E-08 1.3E-12 96.6 31.9 245 5-371 11-267 (300)
32 COG4946 Uncharacterized protei 99.1 5.5E-08 1.2E-12 95.7 27.1 284 22-374 219-510 (668)
33 KOG2100 Dipeptidyl aminopeptid 99.1 4.6E-07 1E-11 100.3 36.4 230 304-585 345-583 (755)
34 COG1770 PtrB Protease II [Amin 99.1 1.8E-06 3.9E-11 89.9 36.5 118 437-576 373-493 (682)
35 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 4.1E-06 8.9E-11 83.3 33.1 270 61-464 10-283 (300)
36 PRK11028 6-phosphogluconolacto 98.9 4.6E-06 9.9E-11 84.7 30.8 86 4-104 11-97 (330)
37 PF10282 Lactonase: Lactonase, 98.8 2.5E-06 5.3E-11 87.0 27.3 92 5-104 13-104 (345)
38 PF02897 Peptidase_S9_N: Proly 98.8 5.3E-06 1.1E-10 87.1 29.5 127 35-218 128-261 (414)
39 PRK13616 lipoprotein LpqB; Pro 98.8 5.5E-07 1.2E-11 96.8 20.7 115 32-193 351-466 (591)
40 PF08662 eIF2A: Eukaryotic tra 98.8 4.4E-07 9.5E-12 83.9 16.9 147 33-255 8-157 (194)
41 COG2706 3-carboxymuconate cycl 98.7 4.9E-05 1.1E-09 73.4 29.6 305 4-410 15-330 (346)
42 PF08662 eIF2A: Eukaryotic tra 98.7 1E-06 2.2E-11 81.6 16.9 80 5-104 39-118 (194)
43 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00052 1.1E-08 68.8 31.4 119 41-221 11-140 (352)
44 KOG0271 Notchless-like WD40 re 98.5 3.4E-05 7.3E-10 74.5 21.5 58 32-104 117-175 (480)
45 COG2706 3-carboxymuconate cycl 98.5 0.0015 3.2E-08 63.4 32.7 174 247-469 150-332 (346)
46 KOG0279 G protein beta subunit 98.5 2.8E-05 6E-10 72.2 19.9 249 7-371 40-302 (315)
47 PRK13616 lipoprotein LpqB; Pro 98.5 2E-06 4.3E-11 92.5 14.7 89 2-105 376-466 (591)
48 PRK11028 6-phosphogluconolacto 98.5 0.00079 1.7E-08 68.3 32.1 154 178-371 83-246 (330)
49 cd00200 WD40 WD40 domain, foun 98.4 0.00035 7.6E-09 68.0 28.1 192 32-333 11-208 (289)
50 cd00200 WD40 WD40 domain, foun 98.4 0.00024 5.3E-09 69.1 26.3 241 6-371 32-280 (289)
51 KOG0293 WD40 repeat-containing 98.4 1.3E-05 2.8E-10 78.0 16.1 230 32-330 271-513 (519)
52 KOG0305 Anaphase promoting com 98.4 7E-05 1.5E-09 77.1 21.9 251 4-373 196-452 (484)
53 KOG0318 WD40 repeat stress pro 98.4 0.0016 3.5E-08 65.8 30.0 153 32-224 192-357 (603)
54 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00096 2.1E-08 66.9 28.9 90 5-104 27-122 (352)
55 KOG4497 Uncharacterized conser 98.3 1.7E-05 3.7E-10 75.1 14.6 132 35-255 13-147 (447)
56 KOG0291 WD40-repeat-containing 98.3 0.0015 3.3E-08 68.8 29.5 250 3-373 284-541 (893)
57 KOG2055 WD40 repeat protein [G 98.3 0.0001 2.3E-09 72.9 19.8 227 32-372 215-455 (514)
58 PF02239 Cytochrom_D1: Cytochr 98.3 0.00019 4.1E-09 73.3 22.3 266 6-373 59-336 (369)
59 KOG0973 Histone transcription 98.2 6.1E-05 1.3E-09 82.1 17.6 65 32-104 71-147 (942)
60 PF10282 Lactonase: Lactonase, 98.2 0.0042 9.2E-08 63.3 30.1 236 176-469 88-333 (345)
61 KOG2055 WD40 repeat protein [G 98.2 4.3E-05 9.4E-10 75.6 13.9 120 7-194 282-407 (514)
62 KOG0266 WD40 repeat-containing 98.1 0.0012 2.7E-08 69.8 25.8 192 32-333 161-365 (456)
63 KOG0315 G-protein beta subunit 98.1 0.0012 2.6E-08 60.6 21.4 240 18-371 29-277 (311)
64 KOG0273 Beta-transducin family 98.1 0.00043 9.4E-09 68.9 19.9 274 31-373 236-514 (524)
65 KOG0293 WD40 repeat-containing 98.1 0.0001 2.2E-09 72.0 15.3 195 32-333 226-426 (519)
66 KOG0318 WD40 repeat stress pro 98.1 0.0037 8E-08 63.3 25.7 72 301-384 193-264 (603)
67 COG1505 Serine proteases of th 98.1 3.8E-05 8.1E-10 79.3 12.1 121 436-579 349-469 (648)
68 KOG1407 WD40 repeat protein [F 98.0 0.0029 6.2E-08 58.6 22.1 226 32-372 22-251 (313)
69 PF02239 Cytochrom_D1: Cytochr 98.0 0.015 3.3E-07 59.5 30.1 77 6-104 17-95 (369)
70 KOG0272 U4/U6 small nuclear ri 98.0 0.00011 2.3E-09 72.1 13.1 201 21-327 254-457 (459)
71 KOG0272 U4/U6 small nuclear ri 98.0 0.00092 2E-08 65.7 19.0 194 32-329 177-374 (459)
72 KOG0263 Transcription initiati 97.9 0.00038 8.2E-09 73.5 15.9 203 10-317 433-638 (707)
73 KOG2314 Translation initiation 97.9 0.024 5.3E-07 58.0 27.5 107 32-194 212-325 (698)
74 KOG2139 WD40 repeat protein [G 97.9 0.00019 4.1E-09 69.1 12.1 70 23-105 188-257 (445)
75 KOG0271 Notchless-like WD40 re 97.9 0.0008 1.7E-08 65.3 16.3 57 32-103 159-222 (480)
76 PF02897 Peptidase_S9_N: Proly 97.8 0.015 3.3E-07 60.9 27.3 108 40-196 76-191 (414)
77 KOG2314 Translation initiation 97.8 0.016 3.4E-07 59.4 25.0 71 31-104 250-323 (698)
78 PF07676 PD40: WD40-like Beta 97.8 4.8E-05 1E-09 49.9 5.0 38 22-66 2-39 (39)
79 PTZ00421 coronin; Provisional 97.8 0.031 6.7E-07 59.5 28.1 150 176-371 127-278 (493)
80 PF08450 SGL: SMP-30/Gluconola 97.8 0.016 3.4E-07 56.0 24.2 196 35-333 4-214 (246)
81 KOG2096 WD40 repeat protein [G 97.7 0.0041 8.9E-08 59.2 18.5 55 301-370 334-391 (420)
82 KOG2315 Predicted translation 97.7 0.017 3.7E-07 59.2 23.6 235 5-330 146-390 (566)
83 KOG0315 G-protein beta subunit 97.7 0.0067 1.5E-07 55.8 18.4 218 5-329 61-287 (311)
84 KOG0279 G protein beta subunit 97.7 0.053 1.2E-06 51.0 24.5 200 32-334 17-224 (315)
85 TIGR02171 Fb_sc_TIGR02171 Fibr 97.6 0.0032 7E-08 69.0 17.9 82 6-104 330-417 (912)
86 COG3458 Acetyl esterase (deace 97.6 0.00013 2.8E-09 68.0 5.9 60 481-560 55-114 (321)
87 KOG1407 WD40 repeat protein [F 97.6 0.029 6.3E-07 52.2 20.6 59 32-104 66-124 (313)
88 PTZ00420 coronin; Provisional 97.5 0.11 2.3E-06 56.0 28.0 33 175-220 168-200 (568)
89 KOG0973 Histone transcription 97.5 0.0038 8.2E-08 68.6 16.2 101 175-316 130-237 (942)
90 PF07433 DUF1513: Protein of u 97.5 0.071 1.5E-06 51.9 23.2 226 33-334 7-249 (305)
91 PTZ00421 coronin; Provisional 97.4 0.1 2.2E-06 55.6 26.5 136 159-333 150-291 (493)
92 KOG0291 WD40-repeat-containing 97.4 0.28 6.1E-06 52.5 29.4 193 177-460 353-550 (893)
93 KOG1446 Histone H3 (Lys4) meth 97.4 0.08 1.7E-06 50.6 21.7 112 177-331 190-304 (311)
94 KOG0286 G-protein beta subunit 97.4 0.09 2E-06 49.8 21.6 82 276-371 166-248 (343)
95 KOG0286 G-protein beta subunit 97.3 0.033 7E-07 52.7 18.5 214 8-327 122-342 (343)
96 KOG0772 Uncharacterized conser 97.3 0.017 3.6E-07 58.6 17.8 255 20-371 159-428 (641)
97 KOG0266 WD40 repeat-containing 97.3 0.021 4.5E-07 60.6 19.9 79 7-104 227-306 (456)
98 KOG1274 WD40 repeat protein [G 97.2 0.011 2.5E-07 63.8 16.0 83 7-104 120-206 (933)
99 PF06433 Me-amine-dh_H: Methyl 97.2 0.3 6.6E-06 48.3 28.7 215 179-466 99-326 (342)
100 KOG0273 Beta-transducin family 97.2 0.078 1.7E-06 53.4 19.9 112 176-331 278-390 (524)
101 KOG0772 Uncharacterized conser 97.1 0.041 8.9E-07 55.9 18.0 72 22-104 207-286 (641)
102 PLN00181 protein SPA1-RELATED; 97.1 0.32 7E-06 55.7 28.3 59 32-104 534-594 (793)
103 KOG1446 Histone H3 (Lys4) meth 97.1 0.26 5.7E-06 47.2 26.5 230 31-371 15-251 (311)
104 PRK10115 protease 2; Provision 97.1 0.14 3E-06 57.2 24.3 119 178-331 130-254 (686)
105 KOG1274 WD40 repeat protein [G 97.1 0.031 6.8E-07 60.6 18.0 58 33-104 99-156 (933)
106 KOG2237 Predicted serine prote 97.1 0.0034 7.4E-08 65.6 10.5 119 438-577 393-516 (712)
107 KOG0284 Polyadenylation factor 97.1 0.0044 9.4E-08 60.9 10.4 141 176-371 182-325 (464)
108 KOG2315 Predicted translation 97.1 0.019 4.2E-07 58.8 15.4 146 34-255 221-368 (566)
109 PF08450 SGL: SMP-30/Gluconola 97.0 0.063 1.4E-06 51.7 18.5 120 33-217 42-164 (246)
110 PLN02919 haloacid dehalogenase 97.0 0.99 2.1E-05 53.0 31.1 35 178-224 686-720 (1057)
111 KOG0263 Transcription initiati 97.0 0.025 5.3E-07 60.3 15.8 81 277-371 558-638 (707)
112 PF12715 Abhydrolase_7: Abhydr 97.0 0.0011 2.3E-08 66.0 5.3 83 480-571 86-175 (390)
113 PF10647 Gmad1: Lipoprotein Lp 97.0 0.034 7.3E-07 53.8 15.5 73 18-104 9-83 (253)
114 KOG0282 mRNA splicing factor [ 96.9 0.018 4E-07 57.9 13.5 78 7-104 239-317 (503)
115 KOG0305 Anaphase promoting com 96.9 0.18 3.9E-06 52.5 20.7 57 32-104 179-235 (484)
116 COG5354 Uncharacterized protei 96.9 0.16 3.4E-06 51.8 19.4 157 3-221 150-310 (561)
117 PF05448 AXE1: Acetyl xylan es 96.8 0.00096 2.1E-08 66.6 3.8 61 480-560 54-114 (320)
118 KOG0645 WD40 repeat protein [G 96.8 0.38 8.2E-06 45.3 20.1 117 177-333 108-230 (312)
119 KOG0296 Angio-associated migra 96.8 0.58 1.2E-05 45.9 25.3 76 8-104 89-166 (399)
120 PRK05077 frsA fermentation/res 96.8 0.0024 5.2E-08 66.6 6.6 69 481-570 167-236 (414)
121 COG5354 Uncharacterized protei 96.8 0.079 1.7E-06 53.9 16.6 128 32-221 224-352 (561)
122 PLN02919 haloacid dehalogenase 96.8 0.24 5.2E-06 58.0 23.2 125 178-334 743-890 (1057)
123 KOG1273 WD40 repeat protein [G 96.7 0.3 6.5E-06 46.9 19.1 58 32-104 25-83 (405)
124 KOG1524 WD40 repeat-containing 96.6 0.026 5.6E-07 57.6 11.6 57 32-104 106-163 (737)
125 KOG2110 Uncharacterized conser 96.5 0.043 9.4E-07 53.5 12.5 85 5-104 106-191 (391)
126 PTZ00420 coronin; Provisional 96.5 0.59 1.3E-05 50.5 22.4 59 32-104 127-185 (568)
127 KOG2048 WD40 repeat protein [G 96.4 0.12 2.7E-06 54.3 15.9 126 28-225 380-513 (691)
128 PF06433 Me-amine-dh_H: Methyl 96.4 0.72 1.6E-05 45.7 20.4 135 178-334 187-322 (342)
129 KOG2919 Guanine nucleotide-bin 96.4 0.4 8.7E-06 46.2 17.4 41 290-333 241-282 (406)
130 PF04762 IKI3: IKI3 family; I 96.2 2.2 4.8E-05 49.3 26.2 112 246-384 214-332 (928)
131 KOG2096 WD40 repeat protein [G 96.2 0.095 2.1E-06 50.2 12.4 85 5-105 209-297 (420)
132 PLN00181 protein SPA1-RELATED; 96.2 1.3 2.9E-05 50.7 24.5 78 6-104 556-636 (793)
133 KOG2139 WD40 repeat protein [G 96.2 0.07 1.5E-06 52.0 11.6 82 5-106 218-300 (445)
134 KOG1009 Chromatin assembly com 96.1 0.93 2E-05 45.1 19.0 42 323-372 320-362 (434)
135 KOG0265 U5 snRNP-specific prot 96.1 1.4 3E-05 42.3 23.5 58 32-104 49-108 (338)
136 KOG1445 Tumor-specific antigen 96.0 0.097 2.1E-06 54.6 12.3 58 7-75 605-665 (1012)
137 PF04762 IKI3: IKI3 family; I 95.8 0.48 1.1E-05 54.5 18.5 79 158-255 238-318 (928)
138 KOG0282 mRNA splicing factor [ 95.8 0.29 6.2E-06 49.6 14.4 116 32-221 216-334 (503)
139 KOG0643 Translation initiation 95.7 0.91 2E-05 42.7 16.1 81 8-104 77-165 (327)
140 KOG0275 Conserved WD40 repeat- 95.6 0.49 1.1E-05 45.4 14.5 117 176-334 350-469 (508)
141 PRK13604 luxD acyl transferase 95.6 0.026 5.6E-07 55.4 6.4 59 486-563 13-71 (307)
142 TIGR02171 Fb_sc_TIGR02171 Fibr 95.6 0.068 1.5E-06 59.0 9.8 47 43-103 319-366 (912)
143 KOG1445 Tumor-specific antigen 95.5 0.18 3.9E-06 52.7 11.8 85 3-105 698-783 (1012)
144 PF07433 DUF1513: Protein of u 95.5 2.9 6.2E-05 41.0 19.8 86 7-104 30-116 (305)
145 KOG0283 WD40 repeat-containing 95.4 1.9 4.1E-05 46.8 19.4 77 156-257 391-467 (712)
146 KOG0640 mRNA cleavage stimulat 95.3 1.1 2.3E-05 43.1 15.3 119 172-329 214-334 (430)
147 PF07676 PD40: WD40-like Beta 95.2 0.041 8.9E-07 35.7 4.4 36 293-328 3-39 (39)
148 PLN02298 hydrolase, alpha/beta 95.1 0.051 1.1E-06 55.0 7.0 71 479-569 29-100 (330)
149 KOG0639 Transducin-like enhanc 95.1 0.62 1.4E-05 47.5 14.0 82 3-103 485-568 (705)
150 KOG0288 WD40 repeat protein Ti 95.1 0.27 5.9E-06 48.8 11.3 107 28-193 339-450 (459)
151 COG3386 Gluconolactonase [Carb 95.1 1.2 2.6E-05 44.2 16.1 50 156-217 142-193 (307)
152 KOG2394 WD40 protein DMR-N9 [G 94.9 0.023 4.9E-07 58.0 3.4 59 32-104 292-350 (636)
153 KOG0284 Polyadenylation factor 94.9 0.27 5.8E-06 48.8 10.5 142 176-371 140-283 (464)
154 TIGR00976 /NonD putative hydro 94.9 0.052 1.1E-06 59.1 6.6 64 488-569 2-66 (550)
155 KOG0306 WD40-repeat-containing 94.8 1.3 2.8E-05 47.7 16.0 65 32-104 456-526 (888)
156 PRK02888 nitrous-oxide reducta 94.6 3.8 8.3E-05 44.2 19.0 146 36-219 198-353 (635)
157 PLN02442 S-formylglutathione h 94.2 0.11 2.3E-06 51.4 6.5 70 481-566 17-87 (283)
158 KOG4497 Uncharacterized conser 94.1 0.44 9.6E-06 46.0 9.9 110 22-193 309-421 (447)
159 COG3386 Gluconolactonase [Carb 93.9 7.4 0.00016 38.7 27.5 49 277-332 144-193 (307)
160 KOG0310 Conserved WD40 repeat- 93.9 6.9 0.00015 40.1 18.2 222 32-371 70-298 (487)
161 KOG2394 WD40 protein DMR-N9 [G 93.8 0.39 8.5E-06 49.4 9.5 16 178-193 336-351 (636)
162 PF06500 DUF1100: Alpha/beta h 93.8 0.057 1.2E-06 55.0 3.6 67 481-569 164-231 (411)
163 KOG4378 Nuclear protein COP1 [ 93.7 1.2 2.5E-05 45.6 12.4 137 6-219 144-282 (673)
164 COG0412 Dienelactone hydrolase 93.7 0.13 2.9E-06 49.0 5.8 61 482-564 2-62 (236)
165 KOG0310 Conserved WD40 repeat- 93.6 9.7 0.00021 39.1 20.4 195 31-334 27-227 (487)
166 KOG0278 Serine/threonine kinas 93.6 2.3 5E-05 39.7 13.2 123 165-332 174-299 (334)
167 PF10647 Gmad1: Lipoprotein Lp 93.4 0.31 6.7E-06 47.1 7.9 66 32-104 113-183 (253)
168 KOG0771 Prolactin regulatory e 93.3 1.3 2.7E-05 44.3 11.9 54 31-98 187-241 (398)
169 KOG1538 Uncharacterized conser 93.2 4.2 9.1E-05 43.3 15.8 57 32-104 14-71 (1081)
170 KOG0283 WD40 repeat-containing 93.2 6.5 0.00014 42.9 17.7 53 32-100 371-423 (712)
171 COG2936 Predicted acyl esteras 92.8 0.19 4E-06 53.3 5.7 64 483-560 20-85 (563)
172 KOG1273 WD40 repeat protein [G 92.8 2.7 5.8E-05 40.6 12.7 75 6-101 46-121 (405)
173 TIGR02821 fghA_ester_D S-formy 92.8 0.31 6.8E-06 47.8 7.1 67 481-565 12-81 (275)
174 KOG4378 Nuclear protein COP1 [ 92.7 3 6.4E-05 42.8 13.5 117 176-334 166-282 (673)
175 KOG0645 WD40 repeat protein [G 92.7 6.7 0.00014 37.3 14.9 140 177-368 17-166 (312)
176 KOG1523 Actin-related protein 92.6 6.7 0.00015 38.1 15.1 61 32-104 12-73 (361)
177 KOG0771 Prolactin regulatory e 92.4 2.6 5.6E-05 42.2 12.5 58 33-104 147-204 (398)
178 KOG2110 Uncharacterized conser 92.4 0.9 1.9E-05 44.7 9.2 83 6-105 154-237 (391)
179 TIGR03100 hydr1_PEP hydrolase, 92.4 0.4 8.7E-06 47.0 7.2 65 483-569 3-70 (274)
180 TIGR03101 hydr2_PEP hydrolase, 92.3 0.24 5.1E-06 48.2 5.4 68 484-570 2-70 (266)
181 PF06977 SdiA-regulated: SdiA- 92.3 11 0.00024 36.2 17.1 67 21-102 14-80 (248)
182 TIGR01840 esterase_phb esteras 92.2 0.23 4.9E-06 46.6 5.1 55 497-568 1-55 (212)
183 PF02129 Peptidase_S15: X-Pro 92.2 0.21 4.5E-06 49.0 5.0 28 491-521 1-28 (272)
184 KOG0639 Transducin-like enhanc 92.1 0.55 1.2E-05 47.9 7.6 119 6-193 532-652 (705)
185 KOG0319 WD40-repeat-containing 92.1 7.2 0.00016 42.1 15.9 56 36-104 25-80 (775)
186 KOG1539 WD repeat protein [Gen 92.0 0.83 1.8E-05 49.6 9.1 82 61-195 555-638 (910)
187 KOG0265 U5 snRNP-specific prot 91.7 13 0.00029 35.9 21.1 134 158-333 156-297 (338)
188 PRK10566 esterase; Provisional 91.7 0.2 4.4E-06 48.2 4.2 64 487-569 4-67 (249)
189 KOG2919 Guanine nucleotide-bin 91.6 6.5 0.00014 38.3 13.7 59 299-372 208-270 (406)
190 KOG1063 RNA polymerase II elon 91.4 0.92 2E-05 48.2 8.7 67 30-106 525-592 (764)
191 KOG0268 Sof1-like rRNA process 91.4 2 4.3E-05 42.3 10.3 77 6-104 168-245 (433)
192 PLN02385 hydrolase; alpha/beta 91.3 0.41 8.8E-06 48.9 6.2 67 482-569 61-128 (349)
193 COG3509 LpqC Poly(3-hydroxybut 91.2 0.29 6.3E-06 47.0 4.4 59 485-560 38-96 (312)
194 KOG0296 Angio-associated migra 91.0 18 0.00038 36.0 26.9 57 32-103 66-123 (399)
195 KOG2106 Uncharacterized conser 90.8 1.2 2.5E-05 45.8 8.4 82 4-103 426-508 (626)
196 KOG1920 IkappaB kinase complex 90.1 41 0.0009 39.0 20.2 38 62-104 90-127 (1265)
197 COG1506 DAP2 Dipeptidyl aminop 90.0 1.4 3.1E-05 48.7 9.3 64 32-105 14-78 (620)
198 KOG2048 WD40 repeat protein [G 90.0 13 0.00029 39.8 15.4 142 5-218 403-549 (691)
199 PRK10162 acetyl esterase; Prov 89.7 1.4 3E-05 44.3 8.2 61 481-560 56-117 (318)
200 PRK13614 lipoprotein LpqB; Pro 89.5 35 0.00076 37.1 19.3 65 18-98 328-394 (573)
201 KOG1539 WD repeat protein [Gen 89.4 1.1 2.4E-05 48.7 7.3 79 7-105 558-636 (910)
202 KOG0306 WD40-repeat-containing 89.3 37 0.00081 37.1 20.8 150 176-382 510-661 (888)
203 COG4099 Predicted peptidase [G 89.0 1.3 2.8E-05 42.6 6.8 31 490-521 169-199 (387)
204 KOG1520 Predicted alkaloid syn 88.9 8.7 0.00019 38.6 12.7 120 33-195 117-239 (376)
205 KOG0288 WD40 repeat protein Ti 88.7 1.3 2.8E-05 44.2 6.7 61 32-104 389-449 (459)
206 PRK02888 nitrous-oxide reducta 88.4 25 0.00053 38.3 16.5 52 41-104 140-193 (635)
207 PF12146 Hydrolase_4: Putative 88.4 0.89 1.9E-05 34.9 4.5 55 492-568 1-55 (79)
208 KOG0264 Nucleosome remodeling 87.4 20 0.00044 36.4 14.2 60 32-104 229-290 (422)
209 KOG2106 Uncharacterized conser 87.4 39 0.00086 35.2 24.6 60 298-370 447-509 (626)
210 KOG0295 WD40 repeat-containing 87.2 9.3 0.0002 37.8 11.4 36 294-333 330-365 (406)
211 COG3204 Uncharacterized protei 87.1 16 0.00034 35.5 12.7 68 20-102 77-144 (316)
212 PHA02857 monoglyceride lipase; 86.9 1.2 2.5E-05 43.6 5.5 61 487-569 5-65 (276)
213 KOG0303 Actin-binding protein 86.6 38 0.00083 34.1 16.2 94 177-312 134-230 (472)
214 PF01738 DLH: Dienelactone hyd 86.5 0.42 9.2E-06 45.0 2.1 46 495-560 1-46 (218)
215 KOG0307 Vesicle coat complex C 86.4 5.9 0.00013 44.9 10.9 143 156-334 138-286 (1049)
216 COG2272 PnbA Carboxylesterase 86.0 1.2 2.5E-05 46.3 5.0 54 489-560 76-130 (491)
217 KOG0278 Serine/threonine kinas 86.0 31 0.00068 32.5 14.4 148 176-384 145-296 (334)
218 COG3391 Uncharacterized conser 84.7 52 0.0011 33.9 18.2 123 32-224 117-246 (381)
219 PRK13614 lipoprotein LpqB; Pro 84.6 11 0.00024 40.8 11.8 66 32-104 435-503 (573)
220 PF11768 DUF3312: Protein of u 84.3 26 0.00056 37.2 13.8 93 5-104 184-277 (545)
221 PLN00021 chlorophyllase 84.2 1.5 3.3E-05 43.8 4.9 53 493-566 37-89 (313)
222 COG3490 Uncharacterized protei 84.0 19 0.00041 34.7 11.5 73 18-104 57-131 (366)
223 KOG4283 Transcription-coupled 84.0 3.8 8.2E-05 39.3 7.0 88 5-104 168-264 (397)
224 KOG1538 Uncharacterized conser 83.9 69 0.0015 34.7 16.6 36 157-192 33-71 (1081)
225 COG0657 Aes Esterase/lipase [L 83.8 2.3 5E-05 42.5 6.1 76 488-581 57-132 (312)
226 PF10503 Esterase_phd: Esteras 83.6 1.2 2.7E-05 41.7 3.7 51 496-563 2-53 (220)
227 KOG0289 mRNA splicing factor [ 83.4 35 0.00075 34.8 13.5 30 176-218 391-420 (506)
228 COG1770 PtrB Protease II [Amin 83.3 75 0.0016 34.7 28.6 39 158-196 156-195 (682)
229 COG3490 Uncharacterized protei 82.2 9.3 0.0002 36.7 8.7 65 32-104 115-179 (366)
230 KOG1524 WD40 repeat-containing 82.0 9.8 0.00021 39.6 9.4 57 32-104 147-204 (737)
231 KOG0275 Conserved WD40 repeat- 81.9 38 0.00081 33.1 12.7 40 155-194 413-457 (508)
232 PRK10749 lysophospholipase L2; 81.3 3.1 6.7E-05 42.0 5.9 66 481-569 29-94 (330)
233 KOG0643 Translation initiation 81.3 52 0.0011 31.5 22.4 34 162-195 79-114 (327)
234 KOG0277 Peroxisomal targeting 80.1 55 0.0012 31.1 15.2 84 6-104 39-122 (311)
235 KOG0313 Microtubule binding pr 80.0 70 0.0015 32.2 18.9 83 275-373 280-366 (423)
236 PLN02652 hydrolase; alpha/beta 79.9 4.1 8.9E-05 42.2 6.4 67 482-569 110-176 (395)
237 KOG1523 Actin-related protein 78.2 55 0.0012 32.1 12.6 101 178-316 14-118 (361)
238 KOG1920 IkappaB kinase complex 78.1 46 0.001 38.6 13.8 19 32-50 111-129 (1265)
239 PF03088 Str_synth: Strictosid 78.0 7.4 0.00016 30.6 5.7 41 155-195 35-77 (89)
240 KOG0295 WD40 repeat-containing 77.7 43 0.00092 33.4 11.8 52 158-222 315-369 (406)
241 KOG2111 Uncharacterized conser 77.5 71 0.0015 31.4 13.0 20 176-195 228-247 (346)
242 KOG0302 Ribosome Assembly prot 77.4 38 0.00082 33.9 11.4 82 5-104 234-320 (440)
243 PF05694 SBP56: 56kDa selenium 77.3 22 0.00047 36.7 10.2 68 300-371 313-392 (461)
244 PF12740 Chlorophyllase2: Chlo 77.0 2.3 4.9E-05 40.8 3.1 46 498-564 7-52 (259)
245 cd00312 Esterase_lipase Estera 76.8 4.7 0.0001 43.3 5.9 28 495-524 79-106 (493)
246 PF07224 Chlorophyllase: Chlor 75.9 2 4.3E-05 40.7 2.3 51 494-565 32-82 (307)
247 KOG0650 WD40 repeat nucleolar 74.9 1.1E+02 0.0023 32.9 14.4 54 32-100 402-455 (733)
248 PRK13613 lipoprotein LpqB; Pro 74.6 1.4E+02 0.003 32.9 18.0 52 32-98 364-420 (599)
249 KOG4178 Soluble epoxide hydrol 74.4 4.6 9.9E-05 39.8 4.5 55 514-584 45-100 (322)
250 PRK13615 lipoprotein LpqB; Pro 74.3 80 0.0017 34.3 14.1 48 34-98 337-384 (557)
251 PF15492 Nbas_N: Neuroblastoma 72.0 30 0.00065 33.3 9.1 55 35-104 2-61 (282)
252 PRK13615 lipoprotein LpqB; Pro 71.7 51 0.0011 35.7 11.9 66 32-104 418-487 (557)
253 KOG1063 RNA polymerase II elon 71.4 9.9 0.00022 40.8 6.3 85 4-104 551-636 (764)
254 KOG1230 Protein containing rep 71.4 53 0.0011 33.5 10.9 85 5-104 154-249 (521)
255 KOG1007 WD repeat protein TSSC 71.3 1E+02 0.0022 29.9 13.8 71 32-104 65-141 (370)
256 KOG2111 Uncharacterized conser 71.1 32 0.00069 33.6 9.1 86 7-106 161-246 (346)
257 COG3391 Uncharacterized conser 70.7 1.3E+02 0.0029 30.9 22.1 205 33-333 76-284 (381)
258 TIGR02604 Piru_Ver_Nterm putat 70.4 90 0.0019 32.0 13.3 36 156-192 163-200 (367)
259 KOG0264 Nucleosome remodeling 70.3 88 0.0019 32.0 12.3 84 6-104 251-334 (422)
260 PRK10439 enterobactin/ferric e 69.3 13 0.00029 38.7 6.9 38 481-521 179-217 (411)
261 KOG1007 WD repeat protein TSSC 67.4 58 0.0012 31.5 9.8 62 32-104 125-190 (370)
262 PF00135 COesterase: Carboxyle 67.2 5 0.00011 43.5 3.5 53 495-560 109-161 (535)
263 KOG0269 WD40 repeat-containing 66.9 44 0.00096 36.7 10.0 84 5-104 110-194 (839)
264 KOG0289 mRNA splicing factor [ 66.7 1.6E+02 0.0035 30.3 15.1 59 32-104 349-407 (506)
265 KOG0640 mRNA cleavage stimulat 66.3 1.4E+02 0.003 29.3 15.9 64 29-104 215-278 (430)
266 COG4188 Predicted dienelactone 65.5 14 0.0003 37.2 5.8 59 492-566 49-108 (365)
267 PF12566 DUF3748: Protein of u 64.9 64 0.0014 26.4 8.2 75 33-107 3-88 (122)
268 PF13360 PQQ_2: PQQ-like domai 64.2 1.3E+02 0.0027 28.2 14.0 56 6-77 4-61 (238)
269 KOG2321 WD40 repeat protein [G 63.7 2.1E+02 0.0046 30.6 20.0 32 32-72 53-84 (703)
270 KOG2041 WD40 repeat protein [G 63.5 1.9E+02 0.0041 31.9 13.6 203 89-383 118-333 (1189)
271 PF12566 DUF3748: Protein of u 63.4 6 0.00013 32.1 2.3 15 36-50 73-87 (122)
272 PF03088 Str_synth: Strictosid 63.0 32 0.00069 27.0 6.3 65 35-104 2-74 (89)
273 PF07250 Glyoxal_oxid_N: Glyox 61.8 1.5E+02 0.0033 28.3 12.2 35 8-47 49-83 (243)
274 PF00756 Esterase: Putative es 61.3 6.4 0.00014 37.7 2.6 28 492-521 5-32 (251)
275 PRK13613 lipoprotein LpqB; Pro 61.2 26 0.00057 38.3 7.5 65 32-104 456-524 (599)
276 KOG0290 Conserved WD40 repeat- 61.1 1.7E+02 0.0036 28.6 19.0 90 5-103 73-167 (364)
277 KOG0269 WD40 repeat-containing 60.8 48 0.001 36.4 8.9 77 9-104 160-238 (839)
278 PF03403 PAF-AH_p_II: Platelet 60.6 6.3 0.00014 40.6 2.5 13 548-560 120-132 (379)
279 KOG0299 U3 snoRNP-associated p 60.5 2.1E+02 0.0046 29.6 17.2 58 32-103 204-261 (479)
280 KOG0268 Sof1-like rRNA process 59.0 9.9 0.00021 37.6 3.3 84 5-105 251-334 (433)
281 KOG0650 WD40 repeat nucleolar 59.0 91 0.002 33.4 10.3 38 158-195 588-628 (733)
282 PF05787 DUF839: Bacterial pro 58.9 2.2E+02 0.0047 30.9 13.8 35 159-193 482-520 (524)
283 KOG4283 Transcription-coupled 58.6 1.9E+02 0.004 28.3 15.4 128 32-223 145-282 (397)
284 PF12894 Apc4_WD40: Anaphase-p 58.4 36 0.00079 23.0 5.1 29 32-70 13-41 (47)
285 PF06977 SdiA-regulated: SdiA- 58.0 1.8E+02 0.0039 27.9 14.3 36 177-224 173-208 (248)
286 KOG1520 Predicted alkaloid syn 57.7 1.8E+02 0.0038 29.6 11.8 139 300-464 116-256 (376)
287 TIGR02276 beta_rpt_yvtn 40-res 57.7 44 0.00095 21.3 5.5 26 40-74 1-26 (42)
288 KOG0647 mRNA export protein (c 57.2 37 0.0008 33.0 6.7 53 32-99 74-126 (347)
289 KOG2565 Predicted hydrolases o 57.2 15 0.00032 36.8 4.2 63 491-571 132-203 (469)
290 PRK00870 haloalkane dehalogena 57.0 21 0.00046 35.2 5.6 67 481-569 20-86 (302)
291 KOG1963 WD40 repeat protein [G 56.9 86 0.0019 34.9 10.2 57 33-103 208-268 (792)
292 PF15525 DUF4652: Domain of un 56.8 70 0.0015 28.9 7.9 70 5-81 88-159 (200)
293 PRK10985 putative hydrolase; P 56.7 21 0.00044 35.9 5.5 62 485-566 34-97 (324)
294 PLN02872 triacylglycerol lipas 56.5 26 0.00056 36.3 6.2 69 480-560 42-112 (395)
295 TIGR01607 PST-A Plasmodium sub 56.3 16 0.00034 37.0 4.5 70 487-568 2-86 (332)
296 KOG3101 Esterase D [General fu 55.4 18 0.00039 33.3 4.1 57 493-565 26-83 (283)
297 KOG0647 mRNA export protein (c 55.0 2.2E+02 0.0047 28.0 12.5 69 22-104 20-90 (347)
298 KOG0646 WD40 repeat protein [G 54.8 2.7E+02 0.0058 29.0 16.8 59 32-104 83-141 (476)
299 KOG0319 WD40-repeat-containing 54.7 1.8E+02 0.0039 32.0 11.9 81 6-103 41-122 (775)
300 KOG4547 WD40 repeat-containing 52.8 1.9E+02 0.0041 30.9 11.4 33 176-223 146-178 (541)
301 KOG0307 Vesicle coat complex C 51.3 61 0.0013 37.2 8.2 86 7-104 186-271 (1049)
302 KOG0316 Conserved WD40 repeat- 51.2 2.2E+02 0.0048 26.9 12.5 59 32-104 61-119 (307)
303 PF15390 DUF4613: Domain of un 51.0 3.6E+02 0.0077 29.3 13.7 21 174-194 155-175 (671)
304 PF15492 Nbas_N: Neuroblastoma 50.5 24 0.00052 33.9 4.3 36 32-77 45-80 (282)
305 PF04053 Coatomer_WDAD: Coatom 50.5 38 0.00082 35.7 6.3 72 7-104 128-212 (443)
306 PF02273 Acyl_transf_2: Acyl t 50.1 39 0.00085 32.0 5.5 68 488-576 8-78 (294)
307 TIGR03032 conserved hypothetic 49.5 2.8E+02 0.006 27.6 11.8 58 32-107 204-261 (335)
308 PLN02511 hydrolase 49.4 42 0.00091 34.7 6.5 72 481-568 70-141 (388)
309 PF04053 Coatomer_WDAD: Coatom 48.1 2.5E+02 0.0054 29.6 11.9 39 155-194 124-164 (443)
310 PRK05371 x-prolyl-dipeptidyl a 47.9 1.1E+02 0.0024 34.8 9.9 36 481-518 169-211 (767)
311 KOG1230 Protein containing rep 47.6 3.4E+02 0.0073 28.0 12.3 69 5-78 98-170 (521)
312 KOG0303 Actin-binding protein 47.2 1.3E+02 0.0028 30.6 8.8 52 157-221 154-207 (472)
313 KOG1408 WD40 repeat protein [F 47.0 1.4E+02 0.003 32.9 9.5 58 246-316 83-140 (1080)
314 KOG4391 Predicted alpha/beta h 46.8 86 0.0019 29.2 7.0 66 473-560 45-111 (300)
315 KOG1515 Arylacetamide deacetyl 46.5 56 0.0012 32.9 6.6 57 491-560 70-128 (336)
316 TIGR02604 Piru_Ver_Nterm putat 45.5 1.2E+02 0.0025 31.2 9.0 63 33-101 126-198 (367)
317 PF00400 WD40: WD domain, G-be 45.3 56 0.0012 20.2 4.4 18 32-49 13-30 (39)
318 PF05787 DUF839: Bacterial pro 43.7 41 0.00089 36.3 5.4 38 64-104 482-519 (524)
319 KOG4532 WD40-like repeat conta 43.2 3.2E+02 0.0069 26.5 14.6 59 33-104 161-221 (344)
320 KOG0277 Peroxisomal targeting 43.1 3.1E+02 0.0067 26.3 13.3 50 156-217 37-91 (311)
321 KOG4640 Anaphase-promoting com 40.9 95 0.0021 33.5 7.3 50 7-73 44-95 (665)
322 KOG3847 Phospholipase A2 (plat 40.6 27 0.00059 34.2 3.1 12 549-560 139-150 (399)
323 PF10313 DUF2415: Uncharacteri 39.1 1E+02 0.0022 20.4 4.7 35 33-77 3-41 (43)
324 KOG1009 Chromatin assembly com 38.8 32 0.0007 34.7 3.4 60 31-104 124-183 (434)
325 KOG1455 Lysophospholipase [Lip 38.2 91 0.002 30.6 6.2 61 481-560 26-87 (313)
326 smart00135 LY Low-density lipo 38.0 85 0.0018 19.8 4.5 32 32-72 10-41 (43)
327 PF13449 Phytase-like: Esteras 37.2 4.4E+02 0.0096 26.4 13.9 43 62-104 112-164 (326)
328 KOG1332 Vesicle coat complex C 36.8 3.8E+02 0.0083 25.6 18.8 67 294-371 203-275 (299)
329 KOG1408 WD40 repeat protein [F 36.8 3.9E+02 0.0085 29.6 11.0 38 157-194 663-703 (1080)
330 KOG0308 Conserved WD40 repeat- 35.7 6.3E+02 0.014 27.7 14.7 56 277-342 194-249 (735)
331 PLN02211 methyl indole-3-aceta 35.3 66 0.0014 31.3 5.1 21 548-569 38-58 (273)
332 PF06342 DUF1057: Alpha/beta h 35.2 64 0.0014 31.4 4.7 80 482-588 6-89 (297)
333 PF07859 Abhydrolase_3: alpha/ 35.0 40 0.00086 31.1 3.4 33 548-584 21-54 (211)
334 KOG0294 WD40 repeat-containing 34.9 4.6E+02 0.01 26.0 19.5 17 178-194 172-188 (362)
335 COG2267 PldB Lysophospholipase 34.8 52 0.0011 32.6 4.3 64 481-566 8-71 (298)
336 PF12695 Abhydrolase_5: Alpha/ 34.3 26 0.00055 29.8 1.8 22 547-569 18-39 (145)
337 KOG4328 WD40 protein [Function 33.8 5.7E+02 0.012 26.7 15.8 89 4-104 209-297 (498)
338 KOG3621 WD40 repeat-containing 33.7 52 0.0011 35.8 4.1 85 6-104 56-142 (726)
339 PF07082 DUF1350: Protein of u 33.3 48 0.001 31.6 3.5 14 547-560 39-52 (250)
340 PF09910 DUF2139: Uncharacteri 33.3 1.6E+02 0.0036 28.8 7.0 74 322-414 76-150 (339)
341 TIGR01250 pro_imino_pep_2 prol 33.2 59 0.0013 31.1 4.4 20 549-569 47-66 (288)
342 TIGR03502 lipase_Pla1_cef extr 32.8 45 0.00097 37.7 3.7 22 548-570 469-490 (792)
343 PF04083 Abhydro_lipase: Parti 32.7 1.8E+02 0.0039 21.1 5.7 25 480-504 10-34 (63)
344 PLN03087 BODYGUARD 1 domain co 32.4 84 0.0018 33.5 5.6 65 483-570 176-246 (481)
345 KOG0294 WD40 repeat-containing 32.4 1.4E+02 0.0031 29.4 6.4 59 32-105 129-187 (362)
346 KOG2624 Triglyceride lipase-ch 31.9 1.1E+02 0.0025 31.6 6.2 64 480-560 46-111 (403)
347 KOG3914 WD repeat protein WDR4 31.8 3E+02 0.0066 28.0 8.8 27 166-192 142-169 (390)
348 PLN00193 expansin-A; Provision 31.1 1.5E+02 0.0033 28.5 6.4 63 449-511 183-250 (256)
349 COG2382 Fes Enterochelin ester 30.7 35 0.00075 33.4 2.1 39 481-521 68-106 (299)
350 KOG4547 WD40 repeat-containing 30.3 7.1E+02 0.015 26.7 12.2 81 6-104 81-162 (541)
351 PF11768 DUF3312: Protein of u 30.1 1.7E+02 0.0038 31.3 7.2 66 23-104 252-317 (545)
352 PF05694 SBP56: 56kDa selenium 29.1 2.1E+02 0.0046 29.8 7.4 63 33-104 314-391 (461)
353 KOG3617 WD40 and TPR repeat-co 28.9 1.9E+02 0.0042 32.6 7.4 67 23-102 8-75 (1416)
354 PLN00050 expansin A; Provision 28.8 1.9E+02 0.0042 27.6 6.7 64 448-511 174-242 (247)
355 COG3204 Uncharacterized protei 28.0 6E+02 0.013 25.1 18.6 37 177-225 88-124 (316)
356 PRK05855 short chain dehydroge 28.0 88 0.0019 34.1 5.2 58 488-570 8-65 (582)
357 KOG0855 Alkyl hydroperoxide re 27.5 1.8E+02 0.0039 25.7 5.6 58 485-560 72-129 (211)
358 PF10584 Proteasome_A_N: Prote 27.4 24 0.00052 19.9 0.3 9 36-44 6-14 (23)
359 KOG2377 Uncharacterized conser 27.3 3.1E+02 0.0067 28.7 8.1 63 32-105 68-130 (657)
360 PF10340 DUF2424: Protein of u 26.3 61 0.0013 33.1 3.1 23 497-522 108-131 (374)
361 KOG4649 PQQ (pyrrolo-quinoline 25.9 4E+02 0.0086 25.7 8.0 83 3-104 71-153 (354)
362 KOG3621 WD40 repeat-containing 25.7 2.2E+02 0.0047 31.3 7.0 57 34-103 37-93 (726)
363 KOG1963 WD40 repeat protein [G 25.1 1.6E+02 0.0035 32.9 6.1 61 29-104 250-310 (792)
364 COG2945 Predicted hydrolase of 24.9 1.1E+02 0.0023 28.1 4.0 62 482-560 4-65 (210)
365 PF15525 DUF4652: Domain of un 24.9 5.3E+02 0.012 23.5 11.7 64 39-104 66-129 (200)
366 PF13449 Phytase-like: Esteras 24.8 6.9E+02 0.015 25.0 10.5 73 32-104 148-232 (326)
367 KOG1034 Transcriptional repres 24.7 2.5E+02 0.0054 27.9 6.6 65 30-104 135-199 (385)
368 KOG2100 Dipeptidyl aminopeptid 24.4 3.2E+02 0.007 31.1 8.7 65 37-106 103-167 (755)
369 KOG1036 Mitotic spindle checkp 24.3 7E+02 0.015 24.6 10.7 63 21-99 5-67 (323)
370 PF01731 Arylesterase: Arylest 23.8 3E+02 0.0065 21.4 5.9 38 157-195 36-74 (86)
371 COG4831 Roadblock/LC7 domain [ 23.3 54 0.0012 25.7 1.6 19 33-51 15-33 (109)
372 PF03022 MRJP: Major royal jel 22.8 4.3E+02 0.0093 25.9 8.3 63 5-79 34-105 (287)
373 PF04841 Vps16_N: Vps16, N-ter 22.5 2.9E+02 0.0063 28.8 7.4 59 32-103 218-276 (410)
374 TIGR03343 biphenyl_bphD 2-hydr 21.6 65 0.0014 31.1 2.3 21 549-570 54-74 (282)
375 PF09910 DUF2139: Uncharacteri 21.4 3.9E+02 0.0084 26.4 7.2 66 399-471 82-150 (339)
376 COG4757 Predicted alpha/beta h 21.3 1.1E+02 0.0024 28.9 3.5 55 485-560 8-62 (281)
377 KOG0302 Ribosome Assembly prot 20.9 9E+02 0.02 24.7 10.5 120 176-332 259-380 (440)
No 1
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=2e-21 Score=202.15 Aligned_cols=238 Identities=15% Similarity=0.113 Sum_probs=167.0
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCE--EEEEEecccccccCCCceEEEEEECCCCceEecccC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~--laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (595)
+.+.||+.|.. ++..++||. .......|+|||||++ ++|++.+ .+..+||++++++|+.++|+..
T Consensus 163 ~~~~l~~~d~d----G~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~ 229 (428)
T PRK01029 163 KQGELWSVDYD----GQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILAL 229 (428)
T ss_pred ccceEEEEcCC----CCCceEccc--CCCCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecC
Confidence 35789999997 889999995 3335789999999998 5557765 4568999999999999999876
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEE
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (595)
+. ....+.|||||+.|+|+... .| ..++|
T Consensus 230 ~g-----~~~~p~wSPDG~~Laf~s~~---------------------~g-------------------------~~di~ 258 (428)
T PRK01029 230 QG-----NQLMPTFSPRKKLLAFISDR---------------------YG-------------------------NPDLF 258 (428)
T ss_pred CC-----CccceEECCCCCEEEEEECC---------------------CC-------------------------Cccee
Confidence 65 34579999999999997421 01 01233
Q ss_pred E--EcC-C---CCeeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC--CceEEEeccCCCC
Q 007620 161 L--GSL-D---GTAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPA 230 (595)
Q Consensus 161 ~--~d~-~---g~~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~~l~~~~~~ 230 (595)
+ +++ . |++++|+... ....++|||||++|+|++.... ..+||++++. ++..+.++...
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~-- 326 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKY-- 326 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCC--
Confidence 3 233 2 3667777543 3357899999999999975322 2378888875 45566665431
Q ss_pred ccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCC
Q 007620 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDS 310 (595)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg 310 (595)
.....+.|+|||+. |++... +.+ ...++++|+ .+++.+.|+........+.|+|||
T Consensus 327 -----------~~~~~p~wSPDG~~-Laf~~~-~~g--------~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 327 -----------RNSSCPAWSPDGKK-IAFCSV-IKG--------VRQICVYDL---ATGRDYQLTTSPENKESPSWAIDS 382 (428)
T ss_pred -----------CCccceeECCCCCE-EEEEEc-CCC--------CcEEEEEEC---CCCCeEEccCCCCCccceEECCCC
Confidence 11236899999985 666522 111 236788886 667888888665566789999999
Q ss_pred cEEEEEEeecccceEEEEEeCCCCCCCcEEEee
Q 007620 311 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (595)
Q Consensus 311 ~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~ 343 (595)
+.|++... ..+...||++|+++ ++.+.|+.
T Consensus 383 ~~L~f~~~-~~g~~~L~~vdl~~--g~~~~Lt~ 412 (428)
T PRK01029 383 LHLVYSAG-NSNESELYLISLIT--KKTRKIVI 412 (428)
T ss_pred CEEEEEEC-CCCCceEEEEECCC--CCEEEeec
Confidence 98887643 23456899999998 45566653
No 2
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=3.9e-21 Score=200.79 Aligned_cols=236 Identities=15% Similarity=0.113 Sum_probs=171.8
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
|.+.||++|.. ++..+++|. .......|+|||||++|||++.. .+..+||++++.+|+.++++..+.
T Consensus 177 ~~~~l~~~d~d----g~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYD----GYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCC----CCCCEEeec--CCCceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 56789999997 778889984 33358899999999999998754 346899999999999999986654
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
....+.|||||+.|+|.... . ...+||++
T Consensus 244 -----~~~~~~~SPDG~~La~~~~~---------------------~-------------------------g~~~I~~~ 272 (429)
T PRK03629 244 -----HNGAPAFSPDGSKLAFALSK---------------------T-------------------------GSLNLYVM 272 (429)
T ss_pred -----CcCCeEECCCCCEEEEEEcC---------------------C-------------------------CCcEEEEE
Confidence 34679999999999996321 0 12468999
Q ss_pred cC-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccc
Q 007620 163 SL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 163 d~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~ 240 (595)
|+ +++.++|+... ....+.|||||++|+|++.... ..+||++|++++..++++....
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~~----------- 331 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEGS----------- 331 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCCC-----------
Confidence 99 56888888654 4468999999999999985422 2389999999887777753211
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeec
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (595)
....+.|+|||+. |++... +. ....++++++ .+++.+.|+.. .....+.|||||+.+++... +
T Consensus 332 --~~~~~~~SpDG~~-Ia~~~~-~~--------g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~-~ 394 (429)
T PRK03629 332 --QNQDADVSSDGKF-MVMVSS-NG--------GQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSS-Q 394 (429)
T ss_pred --CccCEEECCCCCE-EEEEEc-cC--------CCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEc-C
Confidence 1235889999985 555421 11 1235777786 55677777743 33457999999999888764 2
Q ss_pred ccceEEEEEeCCCCCCCcEEEe
Q 007620 321 TSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 321 ~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.+...|+++++++ ..++.|.
T Consensus 395 ~~~~~l~~~~~~G--~~~~~l~ 414 (429)
T PRK03629 395 GMGSVLNLVSTDG--RFKARLP 414 (429)
T ss_pred CCceEEEEEECCC--CCeEECc
Confidence 3456799999987 3445553
No 3
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.89 E-value=2.4e-20 Score=202.88 Aligned_cols=127 Identities=20% Similarity=0.306 Sum_probs=100.9
Q ss_pred cccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCC-ceEEEEEECCCCcEEEEEEEcCCCCCCCCCC
Q 007620 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDG 511 (595)
Q Consensus 433 ~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~-~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y 511 (595)
.|+.+++.+++.++++..|+++|+++. ++..+++..+........+ ++|.|+|++.||.+|+|||++|++++++|+|
T Consensus 317 ~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~y 394 (620)
T COG1506 317 GFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKY 394 (620)
T ss_pred EEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCC
Confidence 456688999999999999999999996 6667777776666655556 9999999999999999999999999998876
Q ss_pred CCcEEEEeccCCccCcccCCcccCCCCc-ccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhhHhh
Q 007620 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYLILS 582 (595)
Q Consensus 512 ~lP~vv~~y~~~~~~~~~~~~~~ggp~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~~~~ 582 (595)
|+||++| |||++ +.....+++|.||++||+|++ |.+| |+..++..|++.+
T Consensus 395 --P~i~~~h--------------GGP~~~~~~~~~~~~q~~~~~G~~V~~----~n~R-GS~GyG~~F~~~~ 445 (620)
T COG1506 395 --PLIVYIH--------------GGPSAQVGYSFNPEIQVLASAGYAVLA----PNYR-GSTGYGREFADAI 445 (620)
T ss_pred --CEEEEeC--------------CCCccccccccchhhHHHhcCCeEEEE----eCCC-CCCccHHHHHHhh
Confidence 9999966 55552 222345678999999999999 5555 5555666665533
No 4
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=6.4e-21 Score=196.85 Aligned_cols=233 Identities=10% Similarity=0.047 Sum_probs=168.7
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCE-EEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~-laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
+..+||+.|.. +...++++. .+ ....|+|||||++ ++|++.. .+..+||++|+.+|+.++|+...
T Consensus 167 ~~~~l~~~d~d----g~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~ 232 (419)
T PRK04043 167 KKSNIVLADYT----LTYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQ 232 (419)
T ss_pred CcceEEEECCC----CCceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCC
Confidence 35789999986 667777873 33 5778999999997 6665543 23579999999999999998654
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. ....+.|||||+.|+|+... . ...+||+
T Consensus 233 g-----~~~~~~~SPDG~~la~~~~~---------------------~-------------------------g~~~Iy~ 261 (419)
T PRK04043 233 G-----MLVVSDVSKDGSKLLLTMAP---------------------K-------------------------GQPDIYL 261 (419)
T ss_pred C-----cEEeeEECCCCCEEEEEEcc---------------------C-------------------------CCcEEEE
Confidence 3 34568899999999997321 0 1358999
Q ss_pred EcC-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccc
Q 007620 162 GSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (595)
Q Consensus 162 ~d~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~ 239 (595)
+++ .|+.++||... ....+.|||||++|+|++.... ..+||++|+++++.++++...
T Consensus 262 ~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g----------- 320 (419)
T PRK04043 262 YDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHG----------- 320 (419)
T ss_pred EECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCC-----------
Confidence 999 55889998654 3457899999999999986532 348999999999887775421
Q ss_pred cccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEee
Q 007620 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (595)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (595)
.....|+|||+. |++......... ......++++++ ++++.+.|+... ....|.|||||+.++|....
T Consensus 321 ----~~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 ----KNNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ----CcCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEcc
Confidence 123589999996 555532111000 011246888886 667888888753 44579999999988887533
Q ss_pred cccceEEEEEeCCCC
Q 007620 320 KTSQTRTWLVCPGSK 334 (595)
Q Consensus 320 ~~~~~~L~~~d~~~~ 334 (595)
.+...|+.+++++.
T Consensus 389 -~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 -GNQSALGIIRLNYN 402 (419)
T ss_pred -CCcEEEEEEecCCC
Confidence 45568999999983
No 5
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=6.4e-21 Score=200.37 Aligned_cols=235 Identities=15% Similarity=0.175 Sum_probs=170.4
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..+||++|.. ++..+++|.. ...+..|+|||||++|||++.. .+..+||++++++|+.++++....
T Consensus 181 ~~~l~~~d~d----g~~~~~lt~~--~~~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g- 246 (435)
T PRK05137 181 IKRLAIMDQD----GANVRYLTDG--SSLVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPG- 246 (435)
T ss_pred ceEEEEECCC----CCCcEEEecC--CCCeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCC-
Confidence 5789999986 8888999843 3358899999999999999864 345899999999999999986654
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|+|.... + ...+||++|
T Consensus 247 ----~~~~~~~SPDG~~la~~~~~---------------------~-------------------------g~~~Iy~~d 276 (435)
T PRK05137 247 ----MTFAPRFSPDGRKVVMSLSQ---------------------G-------------------------GNTDIYTMD 276 (435)
T ss_pred ----cccCcEECCCCCEEEEEEec---------------------C-------------------------CCceEEEEE
Confidence 35689999999999986321 0 135799999
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ .++.++|+... ....+.|||||++|+|++.... ..+||++|++++..+.++....
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~------------ 334 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGG------------ 334 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCC------------
Confidence 9 55888888654 4457899999999999975432 2479999999988888764321
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
....+.|+|||+. |++.. .+.+ ...+++++. +++..+.++.. .....+.|||||+.+++......
T Consensus 335 -~~~~~~~SpdG~~-ia~~~-~~~~--------~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 335 -RYSTPVWSPRGDL-IAFTK-QGGG--------QFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred -cccCeEECCCCCE-EEEEE-cCCC--------ceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCC
Confidence 1235789999985 55542 1111 235777775 55555556543 35678999999998877653221
Q ss_pred c--ceEEEEEeCCCCCCCcEEE
Q 007620 322 S--QTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 322 ~--~~~L~~~d~~~~~~~~~~l 341 (595)
. ...||++|++++ ..+.|
T Consensus 400 ~~~~~~L~~~dl~g~--~~~~l 419 (435)
T PRK05137 400 SGGAPKLYTVDLTGR--NEREV 419 (435)
T ss_pred CCCcceEEEEECCCC--ceEEc
Confidence 1 258999999883 44555
No 6
>PRK10115 protease 2; Provisional
Probab=99.87 E-value=1.6e-18 Score=189.72 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=95.7
Q ss_pred ccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcE
Q 007620 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (595)
Q Consensus 436 ~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (595)
.+++.++++.++...|+++|.+|+.+++.+.|+..+.+..+...+.+|.+++++.||.+|+++|++|++....++. |+
T Consensus 370 ~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~--P~ 447 (686)
T PRK10115 370 PETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHN--PL 447 (686)
T ss_pred CCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEECCCCCCCCC--CE
Confidence 4567899999999999999999998888888998754444444459999999999999999988876654333333 99
Q ss_pred EEEeccCCccCcccCCcccCCCCc-ccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhhHh
Q 007620 516 LFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYLIL 581 (595)
Q Consensus 516 vv~~y~~~~~~~~~~~~~~ggp~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~~~ 581 (595)
||++|+ ||.. ....+....|+|+++||+|+. |++| |+.+++..|.+.
T Consensus 448 ll~~hG--------------g~~~~~~p~f~~~~~~l~~rG~~v~~----~n~R-Gs~g~G~~w~~~ 495 (686)
T PRK10115 448 LVYGYG--------------SYGASIDADFSFSRLSLLDRGFVYAI----VHVR-GGGELGQQWYED 495 (686)
T ss_pred EEEEEC--------------CCCCCCCCCccHHHHHHHHCCcEEEE----EEcC-CCCccCHHHHHh
Confidence 999874 3331 111122346899999999999 8887 788899988764
No 7
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=1.1e-19 Score=190.67 Aligned_cols=234 Identities=15% Similarity=0.083 Sum_probs=167.4
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...||+.|.. +...++|+... ..+..|+|||||++|||++.. ++..+||++|+.+|+.++++....
T Consensus 197 ~~~l~i~d~d----G~~~~~l~~~~--~~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g- 262 (448)
T PRK04792 197 PYQLMIADYD----GYNEQMLLRSP--EPLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPG- 262 (448)
T ss_pred ceEEEEEeCC----CCCceEeecCC--CcccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCC-
Confidence 4678999886 67778888533 357899999999999999864 346899999999999988976553
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|+|.... + ...+||++|
T Consensus 263 ----~~~~~~wSPDG~~La~~~~~---------------------~-------------------------g~~~Iy~~d 292 (448)
T PRK04792 263 ----INGAPRFSPDGKKLALVLSK---------------------D-------------------------GQPEIYVVD 292 (448)
T ss_pred ----CcCCeeECCCCCEEEEEEeC---------------------C-------------------------CCeEEEEEE
Confidence 34579999999999986321 0 135799999
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ +++.++|+... ....++|||||++|+|++.... ..+||++|+++++.+.++....
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~------------ 350 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGE------------ 350 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCC------------
Confidence 9 56888887653 4457899999999999975432 2489999999888777752210
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
....+.|+|||+. |++... .. ....++++++ ++++.+.++... ....+.|+|||+.+++... ..
T Consensus 351 -~~~~~~~SpDG~~-l~~~~~-~~--------g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~-~~ 414 (448)
T PRK04792 351 -QNLGGSITPDGRS-MIMVNR-TN--------GKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTT-YQ 414 (448)
T ss_pred -CCcCeeECCCCCE-EEEEEe-cC--------CceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEe-cC
Confidence 0124689999984 656521 11 1235777786 556777676432 3346899999998887653 23
Q ss_pred cceEEEEEeCCCCCCCcEEE
Q 007620 322 SQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l 341 (595)
+...||++++++ ...+.+
T Consensus 415 g~~~l~~~~~~G--~~~~~l 432 (448)
T PRK04792 415 GKQVLAAVSIDG--RFKARL 432 (448)
T ss_pred CceEEEEEECCC--CceEEC
Confidence 556799999977 344444
No 8
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=1.9e-19 Score=188.23 Aligned_cols=233 Identities=17% Similarity=0.149 Sum_probs=165.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..||+.|.. +...++++... ..+..|+|||||++|||++.. ++..+||++|+.+|+.++++....
T Consensus 176 ~~L~~~D~d----G~~~~~l~~~~--~~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g-- 240 (427)
T PRK02889 176 YQLQISDAD----GQNAQSALSSP--EPIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKG-- 240 (427)
T ss_pred cEEEEECCC----CCCceEeccCC--CCcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCC--
Confidence 579999885 66778887433 358899999999999998854 345789999999999988876553
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
....+.|||||+.|+|.... + ...+||++|+
T Consensus 241 ---~~~~~~~SPDG~~la~~~~~---------------------~-------------------------g~~~Iy~~d~ 271 (427)
T PRK02889 241 ---SNSAPAWSPDGRTLAVALSR---------------------D-------------------------GNSQIYTVNA 271 (427)
T ss_pred ---CccceEECCCCCEEEEEEcc---------------------C-------------------------CCceEEEEEC
Confidence 34689999999999986321 0 1357999999
Q ss_pred C-CCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 165 D-GTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 165 ~-g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+ ++.++|+... ....+.|||||++|+|++.... ..+||++++.++..+.++... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g-------------~ 328 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTG-------------S 328 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCC-------------C
Confidence 4 4778887643 3457899999999999875322 237899998887777665221 0
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeeccc
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
....+.|+|||+. |++... +++ ...+++++. .+++.+.++... ....+.|+|||+.|+|.... .+
T Consensus 329 ~~~~~~~SpDG~~-Ia~~s~-~~g--------~~~I~v~d~---~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~-~g 393 (427)
T PRK02889 329 YNTSPRISPDGKL-LAYISR-VGG--------AFKLYVQDL---ATGQVTALTDTT-RDESPSFAPNGRYILYATQQ-GG 393 (427)
T ss_pred CcCceEECCCCCE-EEEEEc-cCC--------cEEEEEEEC---CCCCeEEccCCC-CccCceECCCCCEEEEEEec-CC
Confidence 1235789999985 555421 111 235788886 556777776542 34679999999998887543 35
Q ss_pred ceEEEEEeCCCCCCCcEEE
Q 007620 323 QTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l 341 (595)
...|+.+++++ ...+.+
T Consensus 394 ~~~l~~~~~~g--~~~~~l 410 (427)
T PRK02889 394 RSVLAAVSSDG--RIKQRL 410 (427)
T ss_pred CEEEEEEECCC--CceEEe
Confidence 56899999976 334444
No 9
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=3.1e-19 Score=187.38 Aligned_cols=235 Identities=14% Similarity=0.082 Sum_probs=168.8
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...|||+|.. ++..++|+.. ...+..|+|||||++|||++.. .+..+||++++++|+.++++....
T Consensus 183 ~~~l~i~D~~----g~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g- 248 (433)
T PRK04922 183 RYALQVADSD----GYNPQTILRS--AEPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRG- 248 (433)
T ss_pred eEEEEEECCC----CCCceEeecC--CCccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCC-
Confidence 4579999986 7788899853 3358899999999999998754 346799999999999988876543
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|+|.... + ...+||+++
T Consensus 249 ----~~~~~~~SpDG~~l~~~~s~---------------------~-------------------------g~~~Iy~~d 278 (433)
T PRK04922 249 ----INGAPSFSPDGRRLALTLSR---------------------D-------------------------GNPEIYVMD 278 (433)
T ss_pred ----CccCceECCCCCEEEEEEeC---------------------C-------------------------CCceEEEEE
Confidence 34578999999999986321 0 125799999
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ +|+.++|+... ....++|||||++|+|++.... ..+||++|+.+++.+.++....
T Consensus 279 ~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~------------ 336 (433)
T PRK04922 279 LGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGN------------ 336 (433)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCC------------
Confidence 9 56888887643 3357899999999999975422 2379999998887777653210
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
....+.|+|||+. |++... +. ....++++++ .+++.+.|+... ....+.|||||+.+++.... .
T Consensus 337 -~~~~~~~SpDG~~-Ia~~~~-~~--------~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~ 400 (433)
T PRK04922 337 -YNARASVSPDGKK-IAMVHG-SG--------GQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATRE-G 400 (433)
T ss_pred -CccCEEECCCCCE-EEEEEC-CC--------CceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEec-C
Confidence 1235799999985 655421 11 1235777786 556777776543 34578999999988776533 3
Q ss_pred cceEEEEEeCCCCCCCcEEEe
Q 007620 322 SQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~ 342 (595)
+...||.+++++ ...+.|.
T Consensus 401 g~~~L~~~~~~g--~~~~~l~ 419 (433)
T PRK04922 401 GRGVLAAVSTDG--RVRQRLV 419 (433)
T ss_pred CceEEEEEECCC--CceEEcc
Confidence 556899999987 3445553
No 10
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=5e-19 Score=186.30 Aligned_cols=226 Identities=17% Similarity=0.158 Sum_probs=163.7
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|++.|.. ++..++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++....
T Consensus 180 ~l~~~d~~----g~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g--- 243 (430)
T PRK00178 180 TLQRSDYD----GARAVTLLQ--SREPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEG--- 243 (430)
T ss_pred EEEEECCC----CCCceEEec--CCCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCC---
Confidence 48888886 777888874 33357899999999999999754 345799999999999999976553
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~- 164 (595)
....+.|||||+.|+|.... + ...+||++|+
T Consensus 244 --~~~~~~~SpDG~~la~~~~~---------------------~-------------------------g~~~Iy~~d~~ 275 (430)
T PRK00178 244 --LNGAPAWSPDGSKLAFVLSK---------------------D-------------------------GNPEIYVMDLA 275 (430)
T ss_pred --CcCCeEECCCCCEEEEEEcc---------------------C-------------------------CCceEEEEECC
Confidence 34579999999999986321 0 1257999999
Q ss_pred CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccC
Q 007620 165 DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (595)
Q Consensus 165 ~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (595)
+++.++|+... ....+.|||||++|+|++.... ..+||++++.+++.++++... ..
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~-------------~~ 332 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVG-------------NY 332 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CC
Confidence 55788887643 4457899999999999975432 247999999888777765321 01
Q ss_pred CCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccc
Q 007620 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (595)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (595)
...+.|+|||+. |++.... .+ ...++++|+ .+++.+.|+... ....+.|||||+.+++... +.+.
T Consensus 333 ~~~~~~Spdg~~-i~~~~~~-~~--------~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~-~~g~ 397 (430)
T PRK00178 333 NARPRLSADGKT-LVMVHRQ-DG--------NFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATR-QQGR 397 (430)
T ss_pred ccceEECCCCCE-EEEEEcc-CC--------ceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEe-cCCc
Confidence 124789999985 6665221 11 235777786 556777777543 3346899999999888753 3355
Q ss_pred eEEEEEeCCC
Q 007620 324 TRTWLVCPGS 333 (595)
Q Consensus 324 ~~L~~~d~~~ 333 (595)
..|+.+++++
T Consensus 398 ~~l~~~~~~g 407 (430)
T PRK00178 398 GVLMLVSING 407 (430)
T ss_pred eEEEEEECCC
Confidence 6899999987
No 11
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=1.2e-18 Score=181.26 Aligned_cols=264 Identities=16% Similarity=0.162 Sum_probs=170.2
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE--EecCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF--TIPSSRRDP 112 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~--~~~~~~~~~ 112 (595)
.+.++ +++|||+......+. .....+||++|.+++.+++||.... ...+++|||||+.++| ++..
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~-~~~~~~l~~~d~dG~~~~~lt~~~~-----~~~sP~wSPDG~~~~~~y~S~~----- 207 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDT-ELKQGELWSVDYDGQNLRPLTQEHS-----LSITPTWMHIGSGFPYLYVSYK----- 207 (428)
T ss_pred CCccc--cCEEEEEEeeCCccc-ccccceEEEEcCCCCCceEcccCCC-----CcccceEccCCCceEEEEEEcc-----
Confidence 45555 899999987632110 0235799999999999999987654 3468999999987444 4210
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVL 190 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~ 190 (595)
. ...+||+.++ .|+.++|+.- .....+.|||||++|+
T Consensus 208 ----------------~-------------------------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~La 246 (428)
T PRK01029 208 ----------------L-------------------------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLA 246 (428)
T ss_pred ----------------C-------------------------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEE
Confidence 0 1368999999 5578888753 3344789999999999
Q ss_pred EEEcccCccccccCcccceeEEE--EcCCC---ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQV--WTTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~--~d~~g---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|+..... ..++++ +++.+ +..++++.... .....+.|+|||+. |++....+
T Consensus 247 f~s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~~------------~~~~~p~wSPDG~~-Laf~s~~~- 302 (428)
T PRK01029 247 FISDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEAF------------GTQGNPSFSPDGTR-LVFVSNKD- 302 (428)
T ss_pred EEECCCC----------CcceeEEEeecccCCCCcceEeecCCC------------CCcCCeEECCCCCE-EEEEECCC-
Confidence 9975322 124555 45543 45555653211 01235899999985 66652211
Q ss_pred CCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecc
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~ 345 (595)
....+|++++ .-.+++.+.++........+.|||||+.|++.... .+..+|+++|+++ ++.+.|+...
T Consensus 303 --------g~~~ly~~~~-~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~--g~~~~Lt~~~ 370 (428)
T PRK01029 303 --------GRPRIYIMQI-DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLAT--GRDYQLTTSP 370 (428)
T ss_pred --------CCceEEEEEC-cccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCC--CCeEEccCCC
Confidence 1235777664 11234566676655566789999999988876532 3456899999998 4566665332
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeec
Q 007620 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (595)
Q Consensus 346 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (595)
... ..+.|+|||+.|+|.....+ ...+ +.+|+.+++.++|+..
T Consensus 371 ~~~-------~~p~wSpDG~~L~f~~~~~g--~~~L----------------~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 371 ENK-------ESPSWAIDSLHLVYSAGNSN--ESEL----------------YLISLITKKTRKIVIG 413 (428)
T ss_pred CCc-------cceEECCCCCEEEEEECCCC--CceE----------------EEEECCCCCEEEeecC
Confidence 110 12899999999988764321 2233 3568877877777643
No 12
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=1.8e-18 Score=181.87 Aligned_cols=230 Identities=15% Similarity=0.175 Sum_probs=163.8
Q ss_pred CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCC
Q 007620 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (595)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (595)
.++|||++.....+ ....+||++|.+++..+++|.... .+..+.|||||+.|+|....
T Consensus 165 ~~~iafv~~~~~~~---~~~~~l~~~d~dg~~~~~lt~~~~-----~v~~p~wSpDG~~lay~s~~-------------- 222 (435)
T PRK05137 165 DTRIVYVAESGPKN---KRIKRLAIMDQDGANVRYLTDGSS-----LVLTPRFSPNRQEITYMSYA-------------- 222 (435)
T ss_pred CCeEEEEEeeCCCC---CcceEEEEECCCCCCcEEEecCCC-----CeEeeEECCCCCEEEEEEec--------------
Confidence 56899998753110 125799999999989999986654 46789999999999997321
Q ss_pred CeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCcc
Q 007620 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (595)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~ 199 (595)
+ ...+||++++ +|+.++|+.. .....+.|||||++|+|+.....
T Consensus 223 --------~------------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 223 --------N------------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred --------C------------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 0 1357899999 5677777643 34457899999999999865322
Q ss_pred ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEE
Q 007620 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (595)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (595)
..+||++|++++..++|+..+.. ...+.|+|||+. |++... .. ....+|
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~-i~f~s~-~~--------g~~~Iy 317 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQ-IVFESD-RS--------GSPQLY 317 (435)
T ss_pred --------CceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCE-EEEEEC-CC--------CCCeEE
Confidence 34899999999988888765321 235899999985 655421 11 124688
Q ss_pred eccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeec-ccccccCCCCCCCe
Q 007620 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-VFENVYSDPGSPMM 358 (595)
Q Consensus 280 ~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~-~~~~~~~~~~~~~~ 358 (595)
++++ ++++.+.++...+.+..+.|||||+.+++... ..+..+|+++|++++ ..+.+... ... .+
T Consensus 318 ~~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~-~~~~~~i~~~d~~~~--~~~~lt~~~~~~---------~p 382 (435)
T PRK05137 318 VMNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQ-GGGQFSIGVMKPDGS--GERILTSGFLVE---------GP 382 (435)
T ss_pred EEEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEc-CCCceEEEEEECCCC--ceEeccCCCCCC---------CC
Confidence 8886 66678888766666778999999998887653 234468999999873 44555432 112 28
Q ss_pred eeCCCCCEEEEEeee
Q 007620 359 TRTSTGTNVIAKIKK 373 (595)
Q Consensus 359 ~~~~dg~~l~~~~~~ 373 (595)
.|+|||+.|++....
T Consensus 383 ~~spDG~~i~~~~~~ 397 (435)
T PRK05137 383 TWAPNGRVIMFFRQT 397 (435)
T ss_pred eECCCCCEEEEEEcc
Confidence 999999999887653
No 13
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=1.1e-17 Score=174.90 Aligned_cols=229 Identities=17% Similarity=0.186 Sum_probs=161.5
Q ss_pred CEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCC
Q 007620 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (595)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~ 122 (595)
++|||+...... ....+||++|.+++..+++|.... .+..+.|||||+.|+|+...
T Consensus 164 ~riayv~~~~~~----~~~~~l~~~d~dg~~~~~lt~~~~-----~~~~p~wSPDG~~la~~s~~--------------- 219 (429)
T PRK03629 164 TRIAYVVQTNGG----QFPYELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFE--------------- 219 (429)
T ss_pred CeEEEEEeeCCC----CcceeEEEEcCCCCCCEEeecCCC-----ceeeeEEcCCCCEEEEEEec---------------
Confidence 789999875321 346799999999988899987554 46789999999999997321
Q ss_pred eeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccc
Q 007620 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (595)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~ 200 (595)
+ ...+||++++ .|+.++|+.. .....+.|||||++|+|+.....
T Consensus 220 -------~------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 220 -------S------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred -------C------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 0 1246888888 5678887643 33457899999999999864321
Q ss_pred cccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEe
Q 007620 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (595)
Q Consensus 201 ~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~ 280 (595)
..+||++|+++++.++++.... ....+.|+|||+. |++... .. ....+|.
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~~-------------~~~~~~wSPDG~~-I~f~s~-~~--------g~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQN-LAYTSD-QA--------GRPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCCC-------------CcCceEECCCCCE-EEEEeC-CC--------CCceEEE
Confidence 2379999999988888765431 1246899999985 655521 11 1236888
Q ss_pred ccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeee
Q 007620 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (595)
Q Consensus 281 ~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (595)
+++ ++++.+.++........+.|||||+.+++... ..+..+|+++|+++ ++.+.|+... .+ ..+.|
T Consensus 316 ~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~-~~g~~~I~~~dl~~--g~~~~Lt~~~-~~-------~~p~~ 381 (429)
T PRK03629 316 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLAT--GGVQVLTDTF-LD-------ETPSI 381 (429)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEc-cCCCceEEEEECCC--CCeEEeCCCC-CC-------CCceE
Confidence 786 66677777654445567999999998877643 23445899999988 4566665321 11 12789
Q ss_pred CCCCCEEEEEeee
Q 007620 361 TSTGTNVIAKIKK 373 (595)
Q Consensus 361 ~~dg~~l~~~~~~ 373 (595)
+|||+.|++...+
T Consensus 382 SpDG~~i~~~s~~ 394 (429)
T PRK03629 382 APNGTMVIYSSSQ 394 (429)
T ss_pred CCCCCEEEEEEcC
Confidence 9999999988754
No 14
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1e-17 Score=175.47 Aligned_cols=228 Identities=18% Similarity=0.140 Sum_probs=157.7
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...|||.|.. ++..++|+.. ...+..|+|||||++|||++.. ++..+||++|+.+|+.++++....
T Consensus 183 ~~~i~i~d~d----g~~~~~lt~~--~~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g- 248 (429)
T PRK01742 183 PYEVRVADYD----GFNQFIVNRS--SQPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRG- 248 (429)
T ss_pred eEEEEEECCC----CCCceEeccC--CCccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCC-
Confidence 4689999986 6667778742 3358899999999999998753 345789999999998888865543
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|++.... +| ..+||++|
T Consensus 249 ----~~~~~~wSPDG~~La~~~~~---------------------~g-------------------------~~~Iy~~d 278 (429)
T PRK01742 249 ----HNGAPAFSPDGSRLAFASSK---------------------DG-------------------------VLNIYVMG 278 (429)
T ss_pred ----ccCceeECCCCCEEEEEEec---------------------CC-------------------------cEEEEEEE
Confidence 23579999999999996311 01 24689999
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ .++.++|+... ....+.|||||++|+|++.... ..+||.++..++..+.+...
T Consensus 279 ~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~~-------------- 334 (429)
T PRK01742 279 ANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGGR-------------- 334 (429)
T ss_pred CCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecCC--------------
Confidence 8 45788887654 4458999999999999975432 23788888887766655211
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
+ ..+.|+|||+. |++.. .+.++++|+ .+++.+.++.. .....+.|+|||+.+++... +.
T Consensus 335 -~-~~~~~SpDG~~-ia~~~-------------~~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~-~g 393 (429)
T PRK01742 335 -G-YSAQISADGKT-LVMIN-------------GDNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSST-QG 393 (429)
T ss_pred -C-CCccCCCCCCE-EEEEc-------------CCCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEc-CC
Confidence 1 23679999984 55541 123555675 44566555532 23467899999999888753 23
Q ss_pred cceEEEEEeCCCCCCCcEEEe
Q 007620 322 SQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~ 342 (595)
....|+++++++ ...+.|.
T Consensus 394 ~~~~l~~~~~~G--~~~~~l~ 412 (429)
T PRK01742 394 LGKVLQLVSADG--RFKARLP 412 (429)
T ss_pred CceEEEEEECCC--CceEEcc
Confidence 334566777776 3445553
No 15
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=5.3e-18 Score=175.26 Aligned_cols=207 Identities=11% Similarity=0.146 Sum_probs=148.8
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.++||++|+. +|+.++|+.... ....|.|||||++|+|+... .+..+||++++++++.++||....
T Consensus 212 ~~~Iyv~dl~----tg~~~~lt~~~g--~~~~~~~SPDG~~la~~~~~-------~g~~~Iy~~dl~~g~~~~LT~~~~- 277 (419)
T PRK04043 212 KPTLYKYNLY----TGKKEKIASSQG--MLVVSDVSKDGSKLLLTMAP-------KGQPDIYLYDTNTKTLTQITNYPG- 277 (419)
T ss_pred CCEEEEEECC----CCcEEEEecCCC--cEEeeEECCCCCEEEEEEcc-------CCCcEEEEEECCCCcEEEcccCCC-
Confidence 3689999997 899999995333 36679999999999999865 356899999999999999987653
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|+|++.. + ...+||+++
T Consensus 278 ----~d~~p~~SPDG~~I~F~Sdr----------------------~------------------------g~~~Iy~~d 307 (419)
T PRK04043 278 ----IDVNGNFVEDDKRIVFVSDR----------------------L------------------------GYPNIFMKK 307 (419)
T ss_pred ----ccCccEECCCCCEEEEEECC----------------------C------------------------CCceEEEEE
Confidence 23478999999999997421 0 135899999
Q ss_pred C-CCCeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 164 L-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 164 ~-~g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+ .|+.++|+..+.. ...|||||++|+|+....... ......+|+++|++++..+.|+....
T Consensus 308 l~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~----~~~~~~~I~v~d~~~g~~~~LT~~~~------------- 369 (419)
T PRK04043 308 LNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNE----FGKNTFNLYLISTNSDYIRRLTANGV------------- 369 (419)
T ss_pred CCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcc----cCCCCcEEEEEECCCCCeEECCCCCC-------------
Confidence 9 5588888764322 358999999999997543110 00012589999999998888876421
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceee
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW 306 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~w 306 (595)
...+.|+|||+. |++... .+ ....++.+++ +|.....|....+.+..|.|
T Consensus 370 -~~~p~~SPDG~~-I~f~~~-~~--------~~~~L~~~~l---~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 370 -NQFPRFSSDGGS-IMFIKY-LG--------NQSALGIIRL---NYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred -cCCeEECCCCCE-EEEEEc-cC--------CcEEEEEEec---CCCeeEEeecCCCccCCCCC
Confidence 125899999985 666532 11 2335777776 66455556555566667766
No 16
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=8.1e-17 Score=169.00 Aligned_cols=230 Identities=17% Similarity=0.149 Sum_probs=160.1
Q ss_pred CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCC
Q 007620 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (595)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (595)
..+|||++..... ....+||++|.++...+++|.... .+..+.|||||+.|+|+...
T Consensus 182 ~~riayv~~~~~~----~~~~~l~i~d~dG~~~~~l~~~~~-----~~~~p~wSPDG~~La~~s~~-------------- 238 (448)
T PRK04792 182 LTRIAYVVVNDKD----KYPYQLMIADYDGYNEQMLLRSPE-----PLMSPAWSPDGRKLAYVSFE-------------- 238 (448)
T ss_pred cCEEEEEEeeCCC----CCceEEEEEeCCCCCceEeecCCC-----cccCceECCCCCEEEEEEec--------------
Confidence 3688998765311 224689999999888888987665 56789999999999997321
Q ss_pred CeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCcc
Q 007620 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYS 199 (595)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~ 199 (595)
+ ...+||++|+ .|+.++|+... ....+.|||||++|+|+.....
T Consensus 239 -------~-------------------------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g-- 284 (448)
T PRK04792 239 -------N-------------------------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG-- 284 (448)
T ss_pred -------C-------------------------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC--
Confidence 0 1357999999 56777776533 3347899999999999864322
Q ss_pred ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEE
Q 007620 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (595)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (595)
..+||++|+++++.+.++.... ....+.|+|||+. |++.... .....+|
T Consensus 285 --------~~~Iy~~dl~tg~~~~lt~~~~-------------~~~~p~wSpDG~~-I~f~s~~---------~g~~~Iy 333 (448)
T PRK04792 285 --------QPEIYVVDIATKALTRITRHRA-------------IDTEPSWHPDGKS-LIFTSER---------GGKPQIY 333 (448)
T ss_pred --------CeEEEEEECCCCCeEECccCCC-------------CccceEECCCCCE-EEEEECC---------CCCceEE
Confidence 3589999999988888765421 1235889999985 5554211 1124688
Q ss_pred eccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCee
Q 007620 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (595)
Q Consensus 280 ~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (595)
++++ .+++.+.++........+.|||||+.+++... ..+..+||++|+++ ++.+.|+...... .+.
T Consensus 334 ~~dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~-~~g~~~I~~~dl~~--g~~~~lt~~~~d~--------~ps 399 (448)
T PRK04792 334 RVNL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR-TNGKFNIARQDLET--GAMQVLTSTRLDE--------SPS 399 (448)
T ss_pred EEEC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEe-cCCceEEEEEECCC--CCeEEccCCCCCC--------Cce
Confidence 8886 55677777643333456899999998877643 23456899999988 4556665322111 168
Q ss_pred eCCCCCEEEEEeee
Q 007620 360 RTSTGTNVIAKIKK 373 (595)
Q Consensus 360 ~~~dg~~l~~~~~~ 373 (595)
|+|||+.|++....
T Consensus 400 ~spdG~~I~~~~~~ 413 (448)
T PRK04792 400 VAPNGTMVIYSTTY 413 (448)
T ss_pred ECCCCCEEEEEEec
Confidence 99999999888754
No 17
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=8e-17 Score=168.58 Aligned_cols=226 Identities=17% Similarity=0.210 Sum_probs=157.4
Q ss_pred CEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCC
Q 007620 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (595)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~ 122 (595)
.+|||++.. .+..+||++|.++...++++.... .+..+.|||||+.|+|....
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~--------------- 216 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPE-----PIISPAWSPDGTKLAYVSFE--------------- 216 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCC-----CcccceEcCCCCEEEEEEcc---------------
Confidence 679998753 346799999998878888876554 46789999999999997321
Q ss_pred eeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccc
Q 007620 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (595)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~ 200 (595)
. ...+||++|+ +|+.++|+.. .....+.|||||++|+|+.....
T Consensus 217 -------~------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 217 -------S------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred -------C------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 0 1357999999 5677777643 34457899999999999865432
Q ss_pred cccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEe
Q 007620 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (595)
Q Consensus 201 ~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~ 280 (595)
..+||++|+.++..++++..... ...+.|+|||+. |++.. +. .....+|.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~-l~f~s--~~-------~g~~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSSGI-------------DTEPFFSPDGRS-IYFTS--DR-------GGAPQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCCCC-------------CcCeEEcCCCCE-EEEEe--cC-------CCCcEEEE
Confidence 35899999998887777653211 235789999985 55542 11 11236777
Q ss_pred ccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeee
Q 007620 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (595)
Q Consensus 281 ~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (595)
+++ .+++.+.++........+.|||||+.+++.... .+..+|+++|+.++ +.+.++..... ..+.|
T Consensus 313 ~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g--~~~~lt~~~~~--------~~p~~ 378 (427)
T PRK02889 313 MPA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATG--QVTALTDTTRD--------ESPSF 378 (427)
T ss_pred EEC---CCCceEEEecCCCCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCC--CeEEccCCCCc--------cCceE
Confidence 775 555666665433334578999999988876532 34458999999884 45666532111 12799
Q ss_pred CCCCCEEEEEeee
Q 007620 361 TSTGTNVIAKIKK 373 (595)
Q Consensus 361 ~~dg~~l~~~~~~ 373 (595)
+|||+.|++....
T Consensus 379 spdg~~l~~~~~~ 391 (427)
T PRK02889 379 APNGRYILYATQQ 391 (427)
T ss_pred CCCCCEEEEEEec
Confidence 9999999998754
No 18
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=9.2e-17 Score=169.14 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=161.3
Q ss_pred CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCC
Q 007620 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (595)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~ 120 (595)
-.++|||++.....+ +...+||++|.+++..++++.... .+..+.|||||+.|+|+....
T Consensus 161 f~~~ia~v~~~~~~~---~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 161 FSTRILYVTAERFSV---NTRYTLQRSDYDGARAVTLLQSRE-----PILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred ceeeEEEEEeeCCCC---CcceEEEEECCCCCCceEEecCCC-----ceeeeeECCCCCEEEEEEcCC------------
Confidence 456899987643110 235689999999888888876554 456899999999999973210
Q ss_pred CCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCc
Q 007620 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPY 198 (595)
Q Consensus 121 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~ 198 (595)
...+||++++ +|+.++|+... ....+.|||||++|+|+.....
T Consensus 221 ----------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 221 ----------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ----------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 1357999999 56888887533 4447899999999999865332
Q ss_pred cccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceE
Q 007620 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (595)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~ 278 (595)
..+||++|+.++..++++..... ...+.|+|||+. |++.... .....+
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~-i~f~s~~---------~g~~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRT-LYFTSDR---------GGKPQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCE-EEEEECC---------CCCceE
Confidence 34899999999888887654311 235789999985 6554211 112367
Q ss_pred EeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCe
Q 007620 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 358 (595)
Q Consensus 279 ~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (595)
|.+++ .+++.+.++........+.|||||+.+++.... .+..+|+++|+++ ++.+.|+...... .+
T Consensus 314 y~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~t--g~~~~lt~~~~~~--------~p 379 (430)
T PRK00178 314 YKVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQR--GSVRILTDTSLDE--------SP 379 (430)
T ss_pred EEEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEcc-CCceEEEEEECCC--CCEEEccCCCCCC--------Cc
Confidence 88786 556777766433345678999999988876532 2456899999998 4556665432111 17
Q ss_pred eeCCCCCEEEEEeee
Q 007620 359 TRTSTGTNVIAKIKK 373 (595)
Q Consensus 359 ~~~~dg~~l~~~~~~ 373 (595)
.|+|||+.+++....
T Consensus 380 ~~spdg~~i~~~~~~ 394 (430)
T PRK00178 380 SVAPNGTMLIYATRQ 394 (430)
T ss_pred eECCCCCEEEEEEec
Confidence 899999999988754
No 19
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=7.1e-17 Score=169.55 Aligned_cols=231 Identities=17% Similarity=0.190 Sum_probs=159.6
Q ss_pred CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCC
Q 007620 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (595)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (595)
+++|||++..... + ....+||++|.+++.+++||.... .+..+.|||||+.|+|+...
T Consensus 167 ~~~ia~v~~~~~~-~--~~~~~l~i~D~~g~~~~~lt~~~~-----~v~~p~wSpDg~~la~~s~~-------------- 224 (433)
T PRK04922 167 WTRIAYVTVSGAG-G--AMRYALQVADSDGYNPQTILRSAE-----PILSPAWSPDGKKLAYVSFE-------------- 224 (433)
T ss_pred cceEEEEEEeCCC-C--CceEEEEEECCCCCCceEeecCCC-----ccccccCCCCCCEEEEEecC--------------
Confidence 5689998865321 0 235689999998888999986654 46789999999999997321
Q ss_pred CeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCcc
Q 007620 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (595)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~ 199 (595)
+ ...+||++++ .|+.++|+.. .....+.|||||++|+|+.....
T Consensus 225 --------~------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 225 --------R------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred --------C------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 0 1357899999 5677777643 33447899999999998864322
Q ss_pred ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEE
Q 007620 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (595)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (595)
..+||++|+.+++.++++..... ...+.|+|||+. |++.. +. .....+|
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~-l~f~s--d~-------~g~~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKS-IYFTS--DR-------GGRPQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCE-EEEEE--CC-------CCCceEE
Confidence 34899999998888887654211 235799999985 55542 11 1123688
Q ss_pred eccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCee
Q 007620 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (595)
Q Consensus 280 ~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (595)
++++ .+++.+.++........+.|||||+.+++... +.+..+|+++|+++ ++.+.|+..... ..+.
T Consensus 320 ~~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~--g~~~~Lt~~~~~--------~~p~ 385 (433)
T PRK04922 320 RVAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLST--GSVRTLTPGSLD--------ESPS 385 (433)
T ss_pred EEEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCC--CCeEECCCCCCC--------CCce
Confidence 8786 55677766644444557999999998877643 23445899999988 455666532211 1178
Q ss_pred eCCCCCEEEEEeee
Q 007620 360 RTSTGTNVIAKIKK 373 (595)
Q Consensus 360 ~~~dg~~l~~~~~~ 373 (595)
|++||+.+++....
T Consensus 386 ~spdG~~i~~~s~~ 399 (433)
T PRK04922 386 FAPNGSMVLYATRE 399 (433)
T ss_pred ECCCCCEEEEEEec
Confidence 99999999888754
No 20
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.75 E-value=3.5e-16 Score=159.55 Aligned_cols=307 Identities=15% Similarity=0.163 Sum_probs=183.6
Q ss_pred CceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
.+..++||+|+. +++.++|+.. ......+.|||||++|||+.. ++||+.++.+++.++||...
T Consensus 20 s~~~~y~i~d~~----~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg 82 (353)
T PF00930_consen 20 SFKGDYYIYDIE----TGEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDG 82 (353)
T ss_dssp EEEEEEEEEETT----TTEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--
T ss_pred ccceeEEEEecC----CCceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEecccc
Confidence 356789999998 8999999842 346899999999999999973 68999999999999999865
Q ss_pred Ccc-ccc------------cccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccccc--ccCcC
Q 007620 82 DIC-LNA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL--LKDEY 146 (595)
Q Consensus 82 ~~~-~~~------------~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~--~~~~~ 146 (595)
... .++ ....+.|||||+.|+|...+++.... -........+. .+... ++++.
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~-------~~~~~~~~~~~-----~yp~~~~~~YPk 150 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPE-------YPLPDYSPPDS-----QYPEVESIRYPK 150 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-E-------EEEEEESSSTE-----SS-EEEEEE--B
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCce-------EEeeccCCccc-----cCCcccccccCC
Confidence 221 111 12378899999999997654433210 00000000000 00000 12221
Q ss_pred CccceEEeecceEEEEcC-CCCeeecCC------CC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 147 DESLFDYYTTAQLVLGSL-DGTAKDFGT------PA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 147 ~~~~~~~~~~~~l~~~d~-~g~~~~lt~------~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
.+... ....|+++++ +++...+.. .. +...+.|++|++.|++...+|... ...+.++|..+
T Consensus 151 --~G~~n-p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~t 219 (353)
T PF00930_consen 151 --AGDPN-PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDAST 219 (353)
T ss_dssp --TTS----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEEECT
T ss_pred --CCCcC-CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEECCC
Confidence 11111 3578999999 555444321 22 556899999999888888776531 23555666554
Q ss_pred ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC
Q 007620 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (595)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~ 298 (595)
++.+.+.... ...|. +
T Consensus 220 g~~~~~~~e~-----------------~~~Wv-------------------------------~---------------- 235 (353)
T PF00930_consen 220 GETRVVLEET-----------------SDGWV-------------------------------D---------------- 235 (353)
T ss_dssp TTCEEEEEEE-----------------SSSSS-------------------------------S----------------
T ss_pred CceeEEEEec-----------------CCcce-------------------------------e----------------
Confidence 4332221000 00000 0
Q ss_pred ccccceeec-CCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecc--cccccCCCCCCCeeeCCCCCEEEEEeeecC
Q 007620 299 LRFRSVSWC-DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375 (595)
Q Consensus 299 ~~~~~~~ws-pDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 375 (595)
....+.|. +++..++.... +++..|||+++.++ +.++.|+..+ +.+ .+.|+++++.|||.+....
T Consensus 236 -~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~--~~~~~lT~G~~~V~~--------i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 236 -VYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDG--GKPRQLTSGDWEVTS--------ILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp -SSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTS--SEEEESS-SSS-EEE--------EEEEECTSSEEEEEESSGG
T ss_pred -eecccccccCCCCEEEEEEE-cCCCcEEEEEcccc--cceeccccCceeecc--------cceEcCCCCEEEEEecCCC
Confidence 01223333 66665554433 56788999999998 4567776443 322 1788899999999886532
Q ss_pred CcccEEEEecCCCCCCCCcceeEeeecC-CCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcc
Q 007620 376 DEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (595)
Q Consensus 376 ~~~~~l~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~ 452 (595)
..... |++++++ +++.++|++..... . ...||+++++++.+.++++.|+
T Consensus 304 p~~r~----------------lY~v~~~~~~~~~~LT~~~~~~-----~-------~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 304 PGERH----------------LYRVSLDSGGEPKCLTCEDGDH-----Y-------SASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp TTSBE----------------EEEEETTETTEEEESSTTSSTT-----E-------EEEE-TTSSEEEEEEESSSSCE
T ss_pred CCceE----------------EEEEEeCCCCCeEeccCCCCCc-----e-------EEEECCCCCEEEEEEcCCCCCC
Confidence 22223 4577888 88888998765431 0 1468999999999999999885
No 21
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.75 E-value=2.8e-15 Score=145.68 Aligned_cols=379 Identities=16% Similarity=0.198 Sum_probs=206.2
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEec-ccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRV-DEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~-~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.+||.++|+ +|+.++||. .-.-+.+|++||||++|||++-. +. +....+||+++.++|++++||....
T Consensus 59 DdlWe~slk----~g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~~~s----s~~taDly~v~~e~Ge~kRiTyfGr- 127 (668)
T COG4946 59 DDLWEYSLK----DGKPLRITS--GLGVVNNPKFSPDGRKVAFSRVMLGS----SLQTADLYVVPSEDGEAKRITYFGR- 127 (668)
T ss_pred hHHHHhhhc----cCCeeEEec--ccceeccccCCCCCcEEEEEEEEecC----CCccccEEEEeCCCCcEEEEEEecc-
Confidence 579999998 899999995 33368999999999999995433 21 1346789999999999999998743
Q ss_pred ccccccc-ceEEecCCcEEEEEec-CC---CCCC-------CCccccCCCCeeeecC-cccccccccccccccCcCC---
Q 007620 84 CLNAVFG-SFVWVNNSTLLIFTIP-SS---RRDP-------PKKTMVPLGPKIQSNE-QKNIIISRMTDNLLKDEYD--- 147 (595)
Q Consensus 84 ~~~~~~~-~~~Wspdg~~l~~~~~-~~---~~~~-------~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~--- 147 (595)
.++ -..|+|||+.|+.+-. .. ..++ .+...++.||...... +|.....|...+ ++++..
T Consensus 128 ----~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntyd-LP~WK~YkG 202 (668)
T COG4946 128 ----RFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYD-LPHWKGYKG 202 (668)
T ss_pred ----ccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCccc-CcccccccC
Confidence 344 4569999999887611 11 1111 0112344454332211 121111111111 010000
Q ss_pred ------------ccce-------------------EE-----eecceEEEEcCCC-CeeecCCCC-eeeeeEECCCCCeE
Q 007620 148 ------------ESLF-------------------DY-----YTTAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYV 189 (595)
Q Consensus 148 ------------~~~~-------------------~~-----~~~~~l~~~d~~g-~~~~lt~~~-~~~~~~~SpDg~~l 189 (595)
+..| .| ....+||.+|++| ..++-|.-. ++ .-..+.||++|
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY-~R~~nsDGkrI 281 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYY-PRNANSDGKRI 281 (668)
T ss_pred CccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhcc-ccccCCCCcEE
Confidence 0000 00 0235666666666 455544432 22 22457799999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEecc-CCCCcc--CCccccccc--------cCC------C--Cceee
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD-LPPAED--IPVCYNSVR--------EGM------R--SISWR 250 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~-~~~~~~--~~~~~~~~~--------~~~------~--~~~ws 250 (595)
+|... .+||++|.++.+.+.|.= +|+... ++..++-.+ .|. | .+...
T Consensus 282 vFq~~--------------GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~ 347 (668)
T COG4946 282 VFQNA--------------GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR 347 (668)
T ss_pred EEecC--------------CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence 99853 489999998887776632 244311 111110000 000 0 00000
Q ss_pred cCC--------CeeEEEEEeecCCCcc-cccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 251 ADK--------PSTLYWVEAQDRGDAN-VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 251 pdg--------~~~l~~~~~~d~~~~~-~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
+.+ +..+.+...+.....- .-....+.+-+++. .|++.+.+...-+.+..+..|+||+.++...
T Consensus 348 ~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN---- 420 (668)
T COG4946 348 PWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN---- 420 (668)
T ss_pred CCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc----
Confidence 000 0011111111100000 00122345666675 6667777766667778889999999755542
Q ss_pred cceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeee
Q 007620 322 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFD 401 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d 401 (595)
.+..||++|+++ ++++.+ +.+-...+.+ +.|+|+++.+++.... + .|. + .+..+|
T Consensus 421 dr~el~vididn--gnv~~i-dkS~~~lItd-----f~~~~nsr~iAYafP~----g--y~t---------q--~Iklyd 475 (668)
T COG4946 421 DRFELWVIDIDN--GNVRLI-DKSEYGLITD-----FDWHPNSRWIAYAFPE----G--YYT---------Q--SIKLYD 475 (668)
T ss_pred CceEEEEEEecC--CCeeEe-cccccceeEE-----EEEcCCceeEEEecCc----c--eee---------e--eEEEEe
Confidence 345899999999 566655 3332222322 8999999998876521 1 111 0 133457
Q ss_pred cCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCc-ceEEEEe
Q 007620 402 INTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEI-TQYHILS 458 (595)
Q Consensus 402 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p-~~l~~~d 458 (595)
+.+++.-.+++... ++. ..+|.+|+++|+|.+...-.| ++-++++
T Consensus 476 m~~~Kiy~vTT~ta---~Df---------sPaFD~d~ryLYfLs~RsLdPs~Drv~fn 521 (668)
T COG4946 476 MDGGKIYDVTTPTA---YDF---------SPAFDPDGRYLYFLSARSLDPSNDRVIFN 521 (668)
T ss_pred cCCCeEEEecCCcc---ccc---------CcccCCCCcEEEEEeccccCCCCCeeEEE
Confidence 77777776654321 111 246888999998887654444 3344444
No 22
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.72 E-value=2.6e-15 Score=157.84 Aligned_cols=228 Identities=18% Similarity=0.187 Sum_probs=157.8
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...||++|.. ++..++|+.. ......|.|||||++|||+... .+..+||++++++|+.++++....
T Consensus 169 ~~~l~~~d~~----g~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~- 234 (417)
T TIGR02800 169 RYELQVADYD----GANPQTITRS--REPILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPG- 234 (417)
T ss_pred cceEEEEcCC----CCCCEEeecC--CCceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCC-
Confidence 4579999886 7788889842 2247789999999999998754 345789999999998888765443
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|+|||+.|+|.... + ...+||+++
T Consensus 235 ----~~~~~~~spDg~~l~~~~~~---------------------~-------------------------~~~~i~~~d 264 (417)
T TIGR02800 235 ----MNGAPAFSPDGSKLAVSLSK---------------------D-------------------------GNPDIYVMD 264 (417)
T ss_pred ----CccceEECCCCCEEEEEECC---------------------C-------------------------CCccEEEEE
Confidence 34578999999999886311 0 124688899
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ ++..++|+... ....+.|+|||++|+|++.... ..+||++|+.+++.+.+....
T Consensus 265 ~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~------------- 321 (417)
T TIGR02800 265 LDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRG------------- 321 (417)
T ss_pred CCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------
Confidence 8 55777776543 3346799999999999875322 237999999887776665321
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
.....+.|+|||+. |++.. .+. ....++++++ .++..+.+... .....+.|+|||..|++.... .
T Consensus 322 ~~~~~~~~spdg~~-i~~~~-~~~--------~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~-~ 386 (417)
T TIGR02800 322 GYNASPSWSPDGDL-IAFVH-REG--------GGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTR-G 386 (417)
T ss_pred CCccCeEECCCCCE-EEEEE-ccC--------CceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeC-C
Confidence 11235789999984 55542 111 1236777786 44455555533 234568999999987776532 3
Q ss_pred cceEEEEEeCCC
Q 007620 322 SQTRTWLVCPGS 333 (595)
Q Consensus 322 ~~~~L~~~d~~~ 333 (595)
+...|++++.++
T Consensus 387 ~~~~l~~~~~~g 398 (417)
T TIGR02800 387 GRGVLGLVSTDG 398 (417)
T ss_pred CcEEEEEEECCC
Confidence 445788888776
No 23
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.3e-14 Score=150.26 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=156.6
Q ss_pred CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCC
Q 007620 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (595)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (595)
+++|||++.+... ....+||++|.++...++||.... .+..+.|||||+.|+|+....
T Consensus 168 ~~ria~v~~~~~~----~~~~~i~i~d~dg~~~~~lt~~~~-----~v~~p~wSPDG~~la~~s~~~------------- 225 (429)
T PRK01742 168 RTRIAYVVQKNGG----SQPYEVRVADYDGFNQFIVNRSSQ-----PLMSPAWSPDGSKLAYVSFEN------------- 225 (429)
T ss_pred CCEEEEEEEEcCC----CceEEEEEECCCCCCceEeccCCC-----ccccceEcCCCCEEEEEEecC-------------
Confidence 6899999875321 224789999999888888876544 467899999999999973210
Q ss_pred CeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCcc
Q 007620 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (595)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~ 199 (595)
...+||++|+ +|+.+.++.. .....++|||||++|+++.....
T Consensus 226 ---------------------------------~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 226 ---------------------------------KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ---------------------------------CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 1356888998 5666666532 23347899999999999864221
Q ss_pred ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEE
Q 007620 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (595)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (595)
..+||++|++++.
T Consensus 271 --------~~~Iy~~d~~~~~----------------------------------------------------------- 283 (429)
T PRK01742 271 --------VLNIYVMGANGGT----------------------------------------------------------- 283 (429)
T ss_pred --------cEEEEEEECCCCC-----------------------------------------------------------
Confidence 1234444444332
Q ss_pred eccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCee
Q 007620 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (595)
Q Consensus 280 ~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (595)
.+.++........+.|||||+.+++... ..+..+||.++..++ ..+.+ ..... .+.
T Consensus 284 -----------~~~lt~~~~~~~~~~wSpDG~~i~f~s~-~~g~~~I~~~~~~~~--~~~~l-~~~~~---------~~~ 339 (429)
T PRK01742 284 -----------PSQLTSGAGNNTEPSWSPDGQSILFTSD-RSGSPQVYRMSASGG--GASLV-GGRGY---------SAQ 339 (429)
T ss_pred -----------eEeeccCCCCcCCEEECCCCCEEEEEEC-CCCCceEEEEECCCC--CeEEe-cCCCC---------Ccc
Confidence 2233322233456889999987776542 234568999998773 33443 21111 167
Q ss_pred eCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCC
Q 007620 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQL 439 (595)
Q Consensus 360 ~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 439 (595)
|+|||+.|++... ..++ .+|+.+|+.+.++... . . ....|+||++
T Consensus 340 ~SpDG~~ia~~~~------~~i~----------------~~Dl~~g~~~~lt~~~-~--~----------~~~~~sPdG~ 384 (429)
T PRK01742 340 ISADGKTLVMING------DNVV----------------KQDLTSGSTEVLSSTF-L--D----------ESPSISPNGI 384 (429)
T ss_pred CCCCCCEEEEEcC------CCEE----------------EEECCCCCeEEecCCC-C--C----------CCceECCCCC
Confidence 9999999887642 1222 4677778766554221 0 0 0246899999
Q ss_pred EEEEEEecCCCcceEEEEeCCCCceeeEecC
Q 007620 440 KILTSKESKTEITQYHILSWPLKKSSQITNF 470 (595)
Q Consensus 440 ~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~ 470 (595)
.+++... ...-..+++.+..+...++|+..
T Consensus 385 ~i~~~s~-~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 385 MIIYSST-QGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred EEEEEEc-CCCceEEEEEECCCCceEEccCC
Confidence 8888764 44455677888766667778654
No 24
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.65 E-value=1.2e-13 Score=145.30 Aligned_cols=232 Identities=17% Similarity=0.187 Sum_probs=157.9
Q ss_pred ccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCcccc
Q 007620 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (595)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~ 118 (595)
.+.+.+++|++..+. .+..+||++|.+++..++|+.... .+..+.|||||+.|+|....
T Consensus 152 ~~~~~~~~~~~~~~~-----~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~~Spdg~~la~~~~~----------- 210 (417)
T TIGR02800 152 GAFSTRIAYVSKSGK-----SRRYELQVADYDGANPQTITRSRE-----PILSPAWSPDGQKLAYVSFE----------- 210 (417)
T ss_pred CCcCCEEEEEEEeCC-----CCcceEEEEcCCCCCCEEeecCCC-----ceecccCCCCCCEEEEEEcC-----------
Confidence 345788999986531 346789999998888899976543 35688999999999997321
Q ss_pred CCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEccc
Q 007620 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (595)
Q Consensus 119 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~ 196 (595)
+ ...+|+++++ +|+.+.++.. .....++|||||+.|+|+....
T Consensus 211 -----------~------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 211 -----------S------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred -----------C------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC
Confidence 0 1246888888 5666666533 2334689999999999986432
Q ss_pred CccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcc
Q 007620 197 PYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD 276 (595)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~ 276 (595)
. ..+||++|+.++..+.+...... ...+.|+|||+. |++... .. ...
T Consensus 256 ~----------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~-l~~~s~-~~--------g~~ 302 (417)
T TIGR02800 256 G----------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKS-IAFTSD-RG--------GSP 302 (417)
T ss_pred C----------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCE-EEEEEC-CC--------CCc
Confidence 2 24799999998877777543211 235789999985 555421 11 123
Q ss_pred eEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCC
Q 007620 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 356 (595)
Q Consensus 277 ~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 356 (595)
.+|++++ .+++.+.+.........+.|||||+.+++.... .+..+|+++|+++ +..+.+...... .
T Consensus 303 ~iy~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~--~~~~~l~~~~~~--------~ 368 (417)
T TIGR02800 303 QIYMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDG--GGERVLTDTGLD--------E 368 (417)
T ss_pred eEEEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCC--CCeEEccCCCCC--------C
Confidence 6788786 555666666544556788999999988776432 2456899999988 345555432111 1
Q ss_pred CeeeCCCCCEEEEEeee
Q 007620 357 MMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 357 ~~~~~~dg~~l~~~~~~ 373 (595)
.+.|++||+.|++....
T Consensus 369 ~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 369 SPSFAPNGRMILYATTR 385 (417)
T ss_pred CceECCCCCEEEEEEeC
Confidence 16899999999888764
No 25
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.63 E-value=1.2e-12 Score=128.68 Aligned_cols=344 Identities=11% Similarity=0.104 Sum_probs=165.8
Q ss_pred CCCCCCCCceeeecCCCC---CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccc
Q 007620 13 LPDDSLGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVF 89 (595)
Q Consensus 13 ~~~~~~g~~~~lt~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~ 89 (595)
.|.+.+-+..|||..+.. .++.+.+|.+||++|.|.+.+ ++..+||++|+++++++|||..+.. ..
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~----~~ 83 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGD----NT 83 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-----T
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCC----Cc
Confidence 334445577888843331 257789999999999998876 5689999999999999999987642 12
Q ss_pred cceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe
Q 007620 90 GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA 168 (595)
Q Consensus 90 ~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~ 168 (595)
-...++|+++.|+|... ..+|+.+|+ +.+.
T Consensus 84 ~g~~~s~~~~~~~Yv~~-------------------------------------------------~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 84 FGGFLSPDDRALYYVKN-------------------------------------------------GRSLRRVDLDTLEE 114 (386)
T ss_dssp TT-EE-TTSSEEEEEET-------------------------------------------------TTEEEEEETTT--E
T ss_pred cceEEecCCCeEEEEEC-------------------------------------------------CCeEEEEECCcCcE
Confidence 25788899998887521 125677888 4465
Q ss_pred eecC--CCCeeeeeEE--CCCCCeEEEEEcccCcccccc-Cc--------ccceeEEEEcCCCceEEEeccCCCCccCCc
Q 007620 169 KDFG--TPAVYTAVEP--SPDQKYVLITSMHRPYSYKVP-CA--------RFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (595)
Q Consensus 169 ~~lt--~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~~-~~--------~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~ 235 (595)
+.|. +..+.....| ..|++.++.....+......+ +. +-...|+.+|+.+|+.+.|......
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~w----- 189 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDW----- 189 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS------
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCcc-----
Confidence 5553 2233322344 556888776655433211111 11 1256899999999988887543210
Q ss_pred cccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC--ccccceeecCCCcEE
Q 007620 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLAL 313 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~--~~~~~~~wspDg~~l 313 (595)
..-+.+||.-...|.|.. +|.+. ...+.+++++. +|+..+.+.... ...+-.-|+|||..+
T Consensus 190 --------lgH~~fsP~dp~li~fCH---EGpw~---~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 190 --------LGHVQFSPTDPTLIMFCH---EGPWD---LVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp --------EEEEEEETTEEEEEEEEE----S-TT---TSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred --------ccCcccCCCCCCEEEEec---cCCcc---eeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEE
Confidence 012566777666566642 22221 11235777786 665666665432 235667799999998
Q ss_pred EEEEeecc-cceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCC
Q 007620 314 VNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (595)
Q Consensus 314 ~~~~~~~~-~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~ 392 (595)
.|...... ...-|+.+|++++ +.+.+........ +.-++||+.++-.-. +.. ......+.....
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~--~~~~~~~~p~~~H--------~~ss~Dg~L~vGDG~---d~p--~~v~~~~~~~~~ 317 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTG--ERRRLMEMPWCSH--------FMSSPDGKLFVGDGG---DAP--VDVADAGGYKIE 317 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT----EEEEEEE-SEEE--------EEE-TTSSEEEEEE---------------------
T ss_pred EEEeecCCCCceEEEeeCCCCC--CceEEEeCCceee--------eEEcCCCCEEEecCC---CCC--ccccccccceec
Confidence 88764332 2346888999984 4454432221111 556788886542211 101 111111111223
Q ss_pred CcceeEeeecCCCceeeeeecCccccceeeEEeeeC-----CCcccccccCCEEEEEEecCCCcceEEEEeCC
Q 007620 393 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFG-----QGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (595)
Q Consensus 393 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~ 460 (595)
+.++|+.++++.++...|-.-.. .+ .+..+ ..-++||||+++++|++. ...++.||++++.
T Consensus 318 ~~p~i~~~~~~~~~~~~l~~h~~--sw----~v~~~~~q~~hPhp~FSPDgk~VlF~Sd-~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 318 NDPWIYLFDVEAGRFRKLARHDT--SW----KVLDGDRQVTHPHPSFSPDGKWVLFRSD-MEGPPAVYLVEIP 383 (386)
T ss_dssp ---EEEEEETTTTEEEEEEE-------------BTTBSSTT----EE-TTSSEEEEEE--TTSS-EEEEEE--
T ss_pred CCcEEEEeccccCceeeeeeccC--cc----eeecCCCccCCCCCccCCCCCEEEEECC-CCCCccEEEEeCc
Confidence 56788888988777665533210 00 01111 113579999999999864 5677889999875
No 26
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.62 E-value=8.4e-14 Score=142.92 Aligned_cols=230 Identities=19% Similarity=0.223 Sum_probs=154.9
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...|++.|-. +-..+.++ ........|.|||||+.|+|+.-.. ....++|++++++|+..++.....
T Consensus 172 ~~~l~~~D~d----g~~~~~l~--~~~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g- 238 (425)
T COG0823 172 PYELALGDYD----GYNQQKLT--DSGSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNG- 238 (425)
T ss_pred CceEEEEccC----CcceeEec--ccCcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCC-
Confidence 3456666542 33444554 3333577899999999999997642 223789999999998777766443
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....++|||||+.|+|.... + ...+||++|
T Consensus 239 ----~~~~P~fspDG~~l~f~~~r---------------------d-------------------------g~~~iy~~d 268 (425)
T COG0823 239 ----NNGAPAFSPDGSKLAFSSSR---------------------D-------------------------GSPDIYLMD 268 (425)
T ss_pred ----ccCCccCCCCCCEEEEEECC---------------------C-------------------------CCccEEEEc
Confidence 34589999999999997321 0 146899999
Q ss_pred CCC-CeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 LDG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~~g-~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+++ +.++|+... ....++|||||++|+|++.... ..+|++++++++..++++....
T Consensus 269 l~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~------------ 326 (425)
T COG0823 269 LDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGG------------ 326 (425)
T ss_pred CCCCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeeccCC------------
Confidence 965 666787654 4458999999999999986532 2389999999998888765421
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
+...+.|+|||+. |++.... .+. -.+.+.+. ..++..+.++ .......+.|+++|+.+++.+...
T Consensus 327 -~~~~p~~SpdG~~-i~~~~~~-~g~--------~~i~~~~~--~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~- 391 (425)
T COG0823 327 -GNSNPVWSPDGDK-IVFESSS-GGQ--------WDIDKNDL--ASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG- 391 (425)
T ss_pred -CCcCccCCCCCCE-EEEEecc-CCc--------eeeEEecc--CCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC-
Confidence 1225889999995 5555321 121 12344443 2332333333 334456789999999988876332
Q ss_pred cceEEEEEeCCC
Q 007620 322 SQTRTWLVCPGS 333 (595)
Q Consensus 322 ~~~~L~~~d~~~ 333 (595)
+...|+.+++++
T Consensus 392 ~~~~l~~~s~~g 403 (425)
T COG0823 392 GGSVLSLVSLDG 403 (425)
T ss_pred CCceEEEeeccc
Confidence 455788888776
No 27
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.59 E-value=5.4e-14 Score=144.30 Aligned_cols=167 Identities=17% Similarity=0.201 Sum_probs=123.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
+.||+.++. +|...++..+.. ....|+|||||++|||+..+ ++..+||++|+.++..++||....
T Consensus 218 ~~i~~~~l~----~g~~~~i~~~~g--~~~~P~fspDG~~l~f~~~r-------dg~~~iy~~dl~~~~~~~Lt~~~g-- 282 (425)
T COG0823 218 PRIYYLDLN----TGKRPVILNFNG--NNGAPAFSPDGSKLAFSSSR-------DGSPDIYLMDLDGKNLPRLTNGFG-- 282 (425)
T ss_pred ceEEEEecc----CCccceeeccCC--ccCCccCCCCCCEEEEEECC-------CCCccEEEEcCCCCcceecccCCc--
Confidence 679999998 666666664443 58899999999999999987 578999999999999888887654
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
....+.|||||+.|+|++.. .| ..+||++++
T Consensus 283 ---i~~~Ps~spdG~~ivf~Sdr---------------------~G-------------------------~p~I~~~~~ 313 (425)
T COG0823 283 ---INTSPSWSPDGSKIVFTSDR---------------------GG-------------------------RPQIYLYDL 313 (425)
T ss_pred ---cccCccCCCCCCEEEEEeCC---------------------CC-------------------------CcceEEECC
Confidence 33589999999999997421 11 358999999
Q ss_pred CC-CeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccc
Q 007620 165 DG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 165 ~g-~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+| +.+++|... ....+.|||||++|+|...... ..++.+.|+.++. .+.++....
T Consensus 314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g----------~~~i~~~~~~~~~~~~~lt~~~~------------ 371 (425)
T COG0823 314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG----------QWDIDKNDLASGGKIRILTSTYL------------ 371 (425)
T ss_pred CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCC----------ceeeEEeccCCCCcEEEcccccc------------
Confidence 77 678887653 3347899999999999984322 1367778876544 555554322
Q ss_pred cCCCCceeecCCCeeEEEE
Q 007620 242 EGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~ 260 (595)
...+.|.++|+. +.+.
T Consensus 372 --~e~ps~~~ng~~-i~~~ 387 (425)
T COG0823 372 --NESPSWAPNGRM-IMFS 387 (425)
T ss_pred --CCCCCcCCCCce-EEEe
Confidence 235788999985 4443
No 28
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.54 E-value=6.6e-12 Score=128.21 Aligned_cols=297 Identities=19% Similarity=0.220 Sum_probs=162.1
Q ss_pred ccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCcccc
Q 007620 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (595)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~ 118 (595)
||||++++|..+..+. -.......+|++|+++++.++|+.... ....+.|||||+.|+|+..
T Consensus 1 S~d~~~~l~~~~~~~~-~r~s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQ-WRHSFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEE-SSSEEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEe-eeeccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 8999999997764210 001235689999999999999976522 4678999999999999732
Q ss_pred CCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC-------------------eee
Q 007620 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (595)
Q Consensus 119 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~-------------------~~~ 178 (595)
..||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 23555554 33444554321 123
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEE
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~ 258 (595)
.+.|||||++|+|...+... -..+.+.+...... ..| .+.
T Consensus 105 ~~~WSpd~~~la~~~~d~~~---------v~~~~~~~~~~~~~----~yp---------------------------~~~ 144 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDERE---------VPEYPLPDYSPPDS----QYP---------------------------EVE 144 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TT---------S-EEEEEEESSSTE----SS----------------------------EEE
T ss_pred ceEECCCCCEEEEEEECCcC---------CceEEeeccCCccc----cCC---------------------------ccc
Confidence 67899999999999876431 11233333221100 000 011
Q ss_pred EEEeecCCCcccccCCcceEEeccCCCCCCCCceecc------ccCccccceeecCCCcEEEEEE-eecccceEEEEEeC
Q 007620 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH------KLDLRFRSVSWCDDSLALVNET-WYKTSQTRTWLVCP 331 (595)
Q Consensus 259 ~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~------~~~~~~~~~~wspDg~~l~~~~-~~~~~~~~L~~~d~ 331 (595)
.+.....|+. ...-.++++++ ++++...+. ..+..+..+.|++|+..+++.. ........|.++|+
T Consensus 145 ~~~YPk~G~~----np~v~l~v~~~---~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~ 217 (353)
T PF00930_consen 145 SIRYPKAGDP----NPRVSLFVVDL---ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDA 217 (353)
T ss_dssp EEE--BTTS-------EEEEEEEES---SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred ccccCCCCCc----CCceEEEEEEC---CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEEC
Confidence 1111111111 01123445565 444443222 2334467899999998544432 33346678999999
Q ss_pred CCCCCCcEEEeecccccccCCCCCCCeee-CCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeee
Q 007620 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTR-TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (595)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (595)
.++ ..+.+..... ........ .+.+ .+++..+++...+. +-.+|| .++..++..+.|
T Consensus 218 ~tg--~~~~~~~e~~-~~Wv~~~~-~~~~~~~~~~~~l~~s~~~--G~~hly----------------~~~~~~~~~~~l 275 (353)
T PF00930_consen 218 STG--ETRVVLEETS-DGWVDVYD-PPHFLGPDGNEFLWISERD--GYRHLY----------------LYDLDGGKPRQL 275 (353)
T ss_dssp CTT--TCEEEEEEES-SSSSSSSS-EEEE-TTTSSEEEEEEETT--SSEEEE----------------EEETTSSEEEES
T ss_pred CCC--ceeEEEEecC-Ccceeeec-ccccccCCCCEEEEEEEcC--CCcEEE----------------EEcccccceecc
Confidence 874 4455432111 11111111 1344 37777777766532 234444 567767777777
Q ss_pred eecCccccceeeEEeeeCCCcccccccCCEEEEEEecCC-CcceEEEEeCC-CCceeeEecCC
Q 007620 411 WESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT-EITQYHILSWP-LKKSSQITNFP 471 (595)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~-~p~~l~~~d~~-~~~~~~Lt~~~ 471 (595)
+..... +..+ ..++.+++.++|++.... .-..||.++++ ++++++||...
T Consensus 276 T~G~~~-----V~~i------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 276 TSGDWE-----VTSI------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED 327 (353)
T ss_dssp S-SSS------EEEE------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS
T ss_pred ccCcee-----eccc------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC
Confidence 755421 1111 245667788998886422 34679999999 88999999764
No 29
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.5e-11 Score=122.32 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=113.1
Q ss_pred ccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEE
Q 007620 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 457 (595)
Q Consensus 378 ~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~ 457 (595)
...+|++|+..+|..-+.+...+- +.|+..+|+... +..- ..++.+-+.++...++...|+.+.++
T Consensus 515 ~~LVYf~gt~d~PlE~hLyvvsye-~~g~~~rlt~~g----~sh~---------~~l~~~~d~fv~~~~sv~sP~cv~~y 580 (867)
T KOG2281|consen 515 RKLVYFVGTKDTPLEHHLYVVSYE-NPGEIARLTEPG----YSHS---------CELDQQCDHFVSYYSSVGSPPCVSLY 580 (867)
T ss_pred ceEEEEEccCCCCceeeEEEEEEe-cCCceeeccCCC----cccc---------hhhhhhhhhHhhhhhcCCCCceEEEE
Confidence 557788887766666554443332 267777776432 1100 12333445677778899999999888
Q ss_pred eCCCCce----eeEecC---CCCCCCcCCC-ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCccc
Q 007620 458 SWPLKKS----SQITNF---PHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDA 529 (595)
Q Consensus 458 d~~~~~~----~~Lt~~---~~~~~~~~~~-~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~ 529 (595)
.+..++- ++..-. -.....+... .+|.|+|++.-|..++|.+|+|.+|++|||| |+++++|+|| .
T Consensus 581 ~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkkY--ptvl~VYGGP-----~ 653 (867)
T KOG2281|consen 581 SLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKKY--PTVLNVYGGP-----G 653 (867)
T ss_pred eccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCCC--ceEEEEcCCC-----c
Confidence 7765432 111110 0011222234 7799999999999999999999999999998 9999999642 2
Q ss_pred CCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhhHhhhccc
Q 007620 530 AGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYLILSYLNR 586 (595)
Q Consensus 530 ~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (595)
-+.|+ +.|-.--+..+++||++||+|+. |...|+.--+=.|-.-++.+|
T Consensus 654 VQlVn---nsfkgi~ylR~~~LaslGy~Vv~-----IDnRGS~hRGlkFE~~ik~km 702 (867)
T KOG2281|consen 654 VQLVN---NSFKGIQYLRFCRLASLGYVVVF-----IDNRGSAHRGLKFESHIKKKM 702 (867)
T ss_pred eEEee---ccccceehhhhhhhhhcceEEEE-----EcCCCccccchhhHHHHhhcc
Confidence 22222 23443345567999999999998 655554333334444444433
No 30
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.28 E-value=1.3e-09 Score=107.45 Aligned_cols=300 Identities=15% Similarity=0.130 Sum_probs=145.0
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..|||++||. +++++|||..+.. ......+||+++.|+|+.. ..+|+.+|+++++.+.|...++.
T Consensus 59 ~~nly~lDL~----t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~----------~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLA----TGEITQLTDGPGD-NTFGGFLSPDDRALYYVKN----------GRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp S-EEEEEETT----T-EEEE---SS-B--TTT-EE-TTSSEEEEEET----------TTEEEEEETTT--EEEEEE--TT
T ss_pred CcceEEEEcc----cCEEEECccCCCC-CccceEEecCCCeEEEEEC----------CCeEEEEECCcCcEEEEEECCcc
Confidence 4689999999 9999999975543 3447899999999999763 36899999999999999887763
Q ss_pred cccccccceEEe--cCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 84 ~~~~~~~~~~Ws--pdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. ...-.|+ .|++.++.......... .. .+ - .-+.+ .+.-.....|+.
T Consensus 124 ~----~g~gt~v~n~d~t~~~g~e~~~~d~~----------~l--~~-~-----~~f~e---------~~~a~p~~~i~~ 172 (386)
T PF14583_consen 124 W----KGYGTWVANSDCTKLVGIEISREDWK----------PL--TK-W-----KGFRE---------FYEARPHCRIFT 172 (386)
T ss_dssp E----EEEEEEEE-TTSSEEEEEEEEGGG-----------------S-H-----HHHHH---------HHHC---EEEEE
T ss_pred c----ccccceeeCCCccEEEEEEEeehhcc----------Cc--cc-c-----HHHHH---------HHhhCCCceEEE
Confidence 2 2345776 46777666421100000 00 00 0 00000 000013578999
Q ss_pred EcC-CCCeeecCCC-CeeeeeEECCC-CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccc
Q 007620 162 GSL-DGTAKDFGTP-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (595)
Q Consensus 162 ~d~-~g~~~~lt~~-~~~~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~ 238 (595)
+|+ +|+.+.|... ....-+-+||. ...|.|.- ..|. .....+||.++.+|+..+.+......+
T Consensus 173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCH-EGpw------~~Vd~RiW~i~~dg~~~~~v~~~~~~e------- 238 (386)
T PF14583_consen 173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCH-EGPW------DLVDQRIWTINTDGSNVKKVHRRMEGE------- 238 (386)
T ss_dssp EETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE--S-T------TTSS-SEEEEETTS---EESS---TTE-------
T ss_pred EECCCCceeEEEecCccccCcccCCCCCCEEEEec-cCCc------ceeceEEEEEEcCCCcceeeecCCCCc-------
Confidence 999 7788776543 34455677775 56666753 2332 222458999999999888886442110
Q ss_pred ccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEe
Q 007620 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (595)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (595)
...---|.|||.. |+|.....++.. -.++-++. .+ ++.+.+..-+ ...-+.-++||..++-+..
T Consensus 239 ----~~gHEfw~~DG~~-i~y~~~~~~~~~-------~~i~~~d~--~t-~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 239 ----SVGHEFWVPDGST-IWYDSYTPGGQD-------FWIAGYDP--DT-GERRRLMEMP-WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp ----EEEEEEE-TTSS--EEEEEEETTT---------EEEEEE-T--TT---EEEEEEE--SEEEEEE-TTSSEEEEEE-
T ss_pred ----ccccccccCCCCE-EEEEeecCCCCc-------eEEEeeCC--CC-CCceEEEeCC-ceeeeEEcCCCCEEEecCC
Confidence 0112469999985 655533332211 12333453 33 3444443322 2333445688887766532
Q ss_pred ec------------ccceEEEEEeCCCCCCCcEEEeecccc----cccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEE
Q 007620 319 YK------------TSQTRTWLVCPGSKDVAPRVLFDRVFE----NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (595)
Q Consensus 319 ~~------------~~~~~L~~~d~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~ 382 (595)
.. ....-||++++.. +..+.|..+... +....+..+-++++|||+.|+|.+...| ...||
T Consensus 303 d~p~~v~~~~~~~~~~~p~i~~~~~~~--~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G--~~~vY 378 (386)
T PF14583_consen 303 DAPVDVADAGGYKIENDPWIYLFDVEA--GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG--PPAVY 378 (386)
T ss_dssp ------------------EEEEEETTT--TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTS--S-EEE
T ss_pred CCCccccccccceecCCcEEEEecccc--CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCC--CccEE
Confidence 10 1123677788876 344545333211 1011122355899999999999986543 33455
Q ss_pred E
Q 007620 383 L 383 (595)
Q Consensus 383 ~ 383 (595)
+
T Consensus 379 ~ 379 (386)
T PF14583_consen 379 L 379 (386)
T ss_dssp E
T ss_pred E
Confidence 3
No 31
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.20 E-value=6.2e-08 Score=96.56 Aligned_cols=245 Identities=13% Similarity=0.046 Sum_probs=135.3
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..|++.|+. +++..+... .........|+|||+.++.+.. ....|+++++.+++.........
T Consensus 11 ~~v~~~d~~----t~~~~~~~~--~~~~~~~l~~~~dg~~l~~~~~---------~~~~v~~~d~~~~~~~~~~~~~~-- 73 (300)
T TIGR03866 11 NTISVIDTA----TLEVTRTFP--VGQRPRGITLSKDGKLLYVCAS---------DSDTIQVIDLATGEVIGTLPSGP-- 73 (300)
T ss_pred CEEEEEECC----CCceEEEEE--CCCCCCceEECCCCCEEEEEEC---------CCCeEEEEECCCCcEEEeccCCC--
Confidence 357888887 565544432 2234667999999998755542 23678889998887654322111
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
....+.|+|||+.|+..... ...|.++|+
T Consensus 74 ---~~~~~~~~~~g~~l~~~~~~------------------------------------------------~~~l~~~d~ 102 (300)
T TIGR03866 74 ---DPELFALHPNGKILYIANED------------------------------------------------DNLVTVIDI 102 (300)
T ss_pred ---CccEEEECCCCCEEEEEcCC------------------------------------------------CCeEEEEEC
Confidence 23568899999977664210 123555555
Q ss_pred -CCC-eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 165 -DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 165 -~g~-~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+++ ...+........+.|+|||+.+++..... ..++.+|..+++........ .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~ 157 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------Q 157 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------C
Confidence 222 22222122234689999999988875421 24556787765443211100 1
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eecccc-------CccccceeecCCCcEEE
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-------DLRFRSVSWCDDSLALV 314 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~-------~~~~~~~~wspDg~~l~ 314 (595)
....+.|++||+. |+.. . .....++++|. ..++. +.+... ......+.|+||++.++
T Consensus 158 ~~~~~~~s~dg~~-l~~~-~----------~~~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 158 RPRFAEFTADGKE-LWVS-S----------EIGGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred CccEEEECCCCCE-EEEE-c----------CCCCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 1235788999873 4322 1 11235666675 32232 222110 11123577999998643
Q ss_pred EEEeecccceEEEEEeCCCCCCCcE-EEe-ecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 315 NETWYKTSQTRTWLVCPGSKDVAPR-VLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 315 ~~~~~~~~~~~L~~~d~~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.... ...+|.++|+.+. +.. .+. ...+.. +.|+|+|+.|+...
T Consensus 223 ~~~~---~~~~i~v~d~~~~--~~~~~~~~~~~~~~---------~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 223 VALG---PANRVAVVDAKTY--EVLDYLLVGQRVWQ---------LAFTPDEKYLLTTN 267 (300)
T ss_pred EEcC---CCCeEEEEECCCC--cEEEEEEeCCCcce---------EEECCCCCEEEEEc
Confidence 3221 1236888898763 322 221 222222 78999999887654
No 32
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.14 E-value=5.5e-08 Score=95.65 Aligned_cols=284 Identities=9% Similarity=0.050 Sum_probs=165.3
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEE
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l 101 (595)
..+-.++.. ++.|..- |.+|+|++.. ++..+||-.|+++...++=|+..+-. .-.-+.||++|
T Consensus 219 eK~vdl~~~--vS~PmIV--~~RvYFlsD~-------eG~GnlYSvdldGkDlrrHTnFtdYY------~R~~nsDGkrI 281 (668)
T COG4946 219 EKFVDLDGN--VSSPMIV--GERVYFLSDH-------EGVGNLYSVDLDGKDLRRHTNFTDYY------PRNANSDGKRI 281 (668)
T ss_pred eeeeecCCC--cCCceEE--cceEEEEecc-------cCccceEEeccCCchhhhcCCchhcc------ccccCCCCcEE
Confidence 344445554 8888875 8899999975 57899999999998888887765411 11234588888
Q ss_pred EEEecCCC----CCCCCccccCCC-CeeeecCcccccccccc-cccccCcCCccceEEeecceEEEEcC-CCCeeecCCC
Q 007620 102 IFTIPSSR----RDPPKKTMVPLG-PKIQSNEQKNIIISRMT-DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP 174 (595)
Q Consensus 102 ~~~~~~~~----~~~~~~~~~~~g-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~ 174 (595)
+|..-.+- ........+.-+ |.-+..+..+-.....| .+.. ..++.......+.+.|+++. .|-..++..+
T Consensus 282 vFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa--~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~ 359 (668)
T COG4946 282 VFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFA--VVNGDYIALVSRGKAFIMRPWDGYSIQVGKK 359 (668)
T ss_pred EEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhc--cCCCcEEEEEecCcEEEECCCCCeeEEcCCC
Confidence 88521100 000000001111 00000000000000001 0000 02344555567889999998 5667788776
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
..+.--.++-|++.++..... ...|.++|.+|++.+.+...- .....+.-++||+
T Consensus 360 ~~VrY~r~~~~~e~~vigt~d------------gD~l~iyd~~~~e~kr~e~~l-------------g~I~av~vs~dGK 414 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTND------------GDKLGIYDKDGGEVKRIEKDL-------------GNIEAVKVSPDGK 414 (668)
T ss_pred CceEEEEEccCCcceEEeccC------------CceEEEEecCCceEEEeeCCc-------------cceEEEEEcCCCc
Confidence 544445566676655555432 237889999999877763221 1123466789988
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
. ++.. +.+-+++++|+ +.|.++.+.... +-+..+.|+|++++++|.-...--..+|.++|.++
T Consensus 415 ~-~vva------------Ndr~el~vidi---dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 415 K-VVVA------------NDRFELWVIDI---DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred E-EEEE------------cCceEEEEEEe---cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 4 2222 34557888897 666887776554 44789999999999888642111234788888888
Q ss_pred CCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeec
Q 007620 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKE 374 (595)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~ 374 (595)
+ +.-.++.....+ ..+++.|||++|||.+..+
T Consensus 479 ~--Kiy~vTT~ta~D-------fsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 479 G--KIYDVTTPTAYD-------FSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred C--eEEEecCCcccc-------cCcccCCCCcEEEEEeccc
Confidence 3 333332211111 1278899999999998654
No 33
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.6e-07 Score=100.34 Aligned_cols=230 Identities=18% Similarity=0.137 Sum_probs=121.3
Q ss_pred eeecCCCcE-EEEEEeecccceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccE
Q 007620 304 VSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 380 (595)
Q Consensus 304 ~~wspDg~~-l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 380 (595)
+.++.|+.. +........+..++..+....+ ..++.++.. .+.+ .+.++.+.+.++|.+.........
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~-~~~~~lt~g~w~v~~--------i~~~~~~~~~i~f~~~~~~~~~~~ 415 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNG-SEPRMLTSGNWEVTS--------ILGYDKDSNRIYFDAYEEDPSERH 415 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCC-CccccccccceEEEE--------eccccCCCceEEEEecCCCCCceE
Confidence 456666543 2222211222567777777663 244545322 2222 145557778888877543222233
Q ss_pred EEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcc-eEEEEeC
Q 007620 381 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT-QYHILSW 459 (595)
Q Consensus 381 l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~-~l~~~d~ 459 (595)
+| .+++.+.....+++...+. ...... ..++...+.++.....+..|- .+-+.+.
T Consensus 416 ly----------------~i~~~~~~~~~lt~~~~~~-~~~~~~-------~~~~~~~~~~v~~~~gP~~p~~~~~~~~~ 471 (755)
T KOG2100|consen 416 LY----------------SISLGSGTVESLTCSLITG-PCTYLS-------VSFSKSAKYYVLSCSGPKVPDGQLTRHSS 471 (755)
T ss_pred EE----------------EEEccccccccccccCCCC-cceEEE-------EecCCcccEEEEEccCCCCCcceeecccc
Confidence 43 4555555555555543220 011111 234444566666555555442 2323332
Q ss_pred CCCc-eeeEecCCCCCCC---cCCC-ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCccc
Q 007620 460 PLKK-SSQITNFPHPYPT---LASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 534 (595)
Q Consensus 460 ~~~~-~~~Lt~~~~~~~~---~~~~-~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ 534 (595)
...+ ...|... ....+ ...+ ..+..+.+- ||...+.++++|++|+++||| |+||++|+||. .++++
T Consensus 472 ~~~~~~~~Le~n-~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~ky--Pllv~~yGGP~-----sq~v~ 542 (755)
T KOG2100|consen 472 KNSKTIVVLETN-EELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSKKY--PLLVVVYGGPG-----SQSVT 542 (755)
T ss_pred ccceEEEEeccC-hhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCCCC--CEEEEecCCCC-----cceee
Confidence 2211 2334332 12111 1112 444444443 999999999999999999977 99999875432 12222
Q ss_pred CCCCcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhhHhhhcc
Q 007620 535 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYLILSYLN 585 (595)
Q Consensus 535 ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (595)
+ .|. .-|+.+++...|++|++ +.|.|....++.|..++..+
T Consensus 543 ~---~~~--~~~~~~~~s~~g~~v~~-----vd~RGs~~~G~~~~~~~~~~ 583 (755)
T KOG2100|consen 543 S---KFS--VDWNEVVVSSRGFAVLQ-----VDGRGSGGYGWDFRSALPRN 583 (755)
T ss_pred e---eEE--ecHHHHhhccCCeEEEE-----EcCCCcCCcchhHHHHhhhh
Confidence 1 111 12445678888999999 66666667788877766544
No 34
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.08 E-value=1.8e-06 Score=89.86 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=84.2
Q ss_pred cCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCC-CCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcE
Q 007620 437 NQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (595)
Q Consensus 437 d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~-~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (595)
+...+.+.++|.+.|..+|-+|+..++.+.|-...-+. .++.....+.++.++.||.+|+--|++=.+++- +.+-|+
T Consensus 373 ~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~--~g~~p~ 450 (682)
T COG1770 373 DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKL--DGSAPL 450 (682)
T ss_pred CCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccCC--CCCCcE
Confidence 55789999999999999999999999988886654332 333445889999999999999999998877553 446699
Q ss_pred EEEeccCCccCcccCCcccCCC--CcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCc
Q 007620 516 LFWAYPEDYKSKDAAGQVRGSP--NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND 576 (595)
Q Consensus 516 vv~~y~~~~~~~~~~~~~~ggp--~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~ 576 (595)
|+++|+- .|.. -.|.. ..--|+.+|++-. |-++| ||++++-
T Consensus 451 lLygYGa-----------YG~s~~p~Fs~----~~lSLlDRGfiyA----IAHVR-GGgelG~ 493 (682)
T COG1770 451 LLYGYGA-----------YGISMDPSFSI----ARLSLLDRGFVYA----IAHVR-GGGELGR 493 (682)
T ss_pred EEEEecc-----------ccccCCcCccc----ceeeeecCceEEE----EEEee-cccccCh
Confidence 9999952 1211 12321 1235788897644 35777 5666654
No 35
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.95 E-value=4.1e-06 Score=83.34 Aligned_cols=270 Identities=11% Similarity=0.035 Sum_probs=140.9
Q ss_pred ceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccc
Q 007620 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (595)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (595)
...|+++|+++++......... ....+.|+|||+.|+.....
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~-----~~~~l~~~~dg~~l~~~~~~--------------------------------- 51 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQ-----RPRGITLSKDGKLLYVCASD--------------------------------- 51 (300)
T ss_pred CCEEEEEECCCCceEEEEECCC-----CCCceEECCCCCEEEEEECC---------------------------------
Confidence 3578888998887655543322 34578999999987664210
Q ss_pred cccCcCCccceEEeecceEEEEcC-CCCee-ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
...|+++|+ +++.. .+........+.|+|||+.++++... ...+.+||+.+
T Consensus 52 ---------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~l~~~d~~~ 104 (300)
T TIGR03866 52 ---------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED------------DNLVTVIDIET 104 (300)
T ss_pred ---------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC------------CCeEEEEECCC
Confidence 123555666 44433 23322223467899999988766422 23688999886
Q ss_pred ceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc
Q 007620 219 KLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (595)
Q Consensus 219 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~ 297 (595)
++. ..+... .....+.|+|||+. ++.. ..+ ...++.++. ..++.......
T Consensus 105 ~~~~~~~~~~--------------~~~~~~~~~~dg~~-l~~~-~~~----------~~~~~~~d~---~~~~~~~~~~~ 155 (300)
T TIGR03866 105 RKVLAEIPVG--------------VEPEGMAVSPDGKI-VVNT-SET----------TNMAHFIDT---KTYEIVDNVLV 155 (300)
T ss_pred CeEEeEeeCC--------------CCcceEEECCCCCE-EEEE-ecC----------CCeEEEEeC---CCCeEEEEEEc
Confidence 543 222110 01235789999973 3222 111 112333453 22222211112
Q ss_pred CccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCC-CCCCeeeCCCCCEEEEEeeecCC
Q 007620 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP-GSPMMTRTSTGTNVIAKIKKEND 376 (595)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~ 376 (595)
......+.|+|||..++..... . ..++++|+.+++ ..+.+. .......... ....+.++++|+.+++....
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~-~--~~v~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--- 227 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEI-G--GTVSVIDVATRK-VIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--- 227 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCC-C--CEEEEEEcCcce-eeeeee-ecccccccccCCccceEECCCCCEEEEEcCC---
Confidence 2234567899999876554211 1 268888988741 112221 1110000000 00126788999987665421
Q ss_pred cccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEE
Q 007620 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (595)
Q Consensus 377 ~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~ 456 (595)
...+. .+|+++++........ ..+. ...|+++++.|+.... .-++|.+
T Consensus 228 -~~~i~----------------v~d~~~~~~~~~~~~~-----~~~~-------~~~~~~~g~~l~~~~~---~~~~i~v 275 (300)
T TIGR03866 228 -ANRVA----------------VVDAKTYEVLDYLLVG-----QRVW-------QLAFTPDEKYLLTTNG---VSNDVSV 275 (300)
T ss_pred -CCeEE----------------EEECCCCcEEEEEEeC-----CCcc-------eEEECCCCCEEEEEcC---CCCeEEE
Confidence 11222 3566666654322111 0111 2458889988765432 2356999
Q ss_pred EeCCCCce
Q 007620 457 LSWPLKKS 464 (595)
Q Consensus 457 ~d~~~~~~ 464 (595)
+|+.+++.
T Consensus 276 ~d~~~~~~ 283 (300)
T TIGR03866 276 IDVAALKV 283 (300)
T ss_pred EECCCCcE
Confidence 99887664
No 36
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.88 E-value=4.6e-06 Score=84.68 Aligned_cols=86 Identities=17% Similarity=0.095 Sum_probs=51.0
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECC-CCceEecccCCC
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPD 82 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-~g~~~~lt~~~~ 82 (595)
...|.+.++.. +|+.+.+..+..........+||||++|+.... ....|.+++++ .|+...+.....
T Consensus 11 ~~~I~~~~~~~---~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~ 78 (330)
T PRK11028 11 SQQIHVWNLNH---EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPL 78 (330)
T ss_pred CCCEEEEEECC---CCceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecC
Confidence 34578888852 455444443444445778899999998765432 12455555554 455443322111
Q ss_pred ccccccccceEEecCCcEEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
......+.++|||+.|+..
T Consensus 79 ---~~~p~~i~~~~~g~~l~v~ 97 (330)
T PRK11028 79 ---PGSPTHISTDHQGRFLFSA 97 (330)
T ss_pred ---CCCceEEEECCCCCEEEEE
Confidence 1134578899999988775
No 37
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.85 E-value=2.5e-06 Score=86.98 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=55.0
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.+|++.++. ..+|+...+.........+...+||++++|+.+.....+ .+.-..|.++.++|+...+......
T Consensus 13 ~gI~~~~~d--~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~----~g~v~~~~i~~~~g~L~~~~~~~~~- 85 (345)
T PF10282_consen 13 GGIYVFRFD--EETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGD----SGGVSSYRIDPDTGTLTLLNSVPSG- 85 (345)
T ss_dssp TEEEEEEEE--TTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSST----TTEEEEEEEETTTTEEEEEEEEEES-
T ss_pred CcEEEEEEc--CCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccC----CCCEEEEEECCCcceeEEeeeeccC-
Confidence 588999883 236766655544455567888999999877665432100 2344455556555776666433210
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
......+..+||++.|+..
T Consensus 86 -g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 86 -GSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp -SSCEEEEEECTTSSEEEEE
T ss_pred -CCCcEEEEEecCCCEEEEE
Confidence 0122356778999988876
No 38
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.82 E-value=5.3e-06 Score=87.07 Aligned_cols=127 Identities=24% Similarity=0.268 Sum_probs=76.2
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~ 114 (595)
..++||||++|||..+.+. .....|+++|+++|+...-. ... ...+.+.|++||+.|+|+........
T Consensus 128 ~~~~Spdg~~la~~~s~~G-----~e~~~l~v~Dl~tg~~l~d~-i~~----~~~~~~~W~~d~~~~~y~~~~~~~~~-- 195 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGG-----SEWYTLRVFDLETGKFLPDG-IEN----PKFSSVSWSDDGKGFFYTRFDEDQRT-- 195 (414)
T ss_dssp EEEETTTSSEEEEEEEETT-----SSEEEEEEEETTTTEEEEEE-EEE----EESEEEEECTTSSEEEEEECSTTTSS--
T ss_pred eeeECCCCCEEEEEecCCC-----CceEEEEEEECCCCcCcCCc-ccc----cccceEEEeCCCCEEEEEEeCccccc--
Confidence 6789999999999887642 34578999999999643210 011 01234999999999999753221000
Q ss_pred ccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC--CeeecCC---CCe-eeeeEECCCCC
Q 007620 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGT---PAV-YTAVEPSPDQK 187 (595)
Q Consensus 115 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g--~~~~lt~---~~~-~~~~~~SpDg~ 187 (595)
. .. ....+||...+ ++ +.+.|.. +.. ...+..|+||+
T Consensus 196 -------~-------------------------~~----~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~ 239 (414)
T PF02897_consen 196 -------S-------------------------DS----GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR 239 (414)
T ss_dssp ---------------------------------CC----GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS
T ss_pred -------c-------------------------cC----CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc
Confidence 0 00 01346777777 44 2233322 233 56788999999
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
+|++....... ..+++++++..
T Consensus 240 ~l~i~~~~~~~---------~s~v~~~d~~~ 261 (414)
T PF02897_consen 240 YLFISSSSGTS---------ESEVYLLDLDD 261 (414)
T ss_dssp EEEEEEESSSS---------EEEEEEEECCC
T ss_pred EEEEEEEcccc---------CCeEEEEeccc
Confidence 99887654320 14666666654
No 39
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.78 E-value=5.5e-07 Score=96.85 Aligned_cols=115 Identities=16% Similarity=0.240 Sum_probs=78.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
..++|.+||||+++||+.....+++ +...+||+.+. +++.+++|... ....+.|+|||+.|+|......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~--d~~s~Lwv~~~-gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~-- 419 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAP--DPASSLWVGPL-GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNT-- 419 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCC--CcceEEEEEeC-CCcceeeecCC------CCCCceECCCCCceEEEecCcc--
Confidence 5789999999999999986432111 45679999997 56668886543 3578999999999999743100
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCCCCeeeeeEECCCCCeEE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~~~~~~~~~SpDg~~l~ 190 (595)
.. ++. . .+ ...++|++++++ +.++ .....+..+.|||||++|+
T Consensus 420 -----------~~-----------~v~-~-----~~-------~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA 463 (591)
T PRK13616 420 -----------VV-----------RVI-R-----DP-------ATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAA 463 (591)
T ss_pred -----------eE-----------EEe-c-----cC-------CCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEE
Confidence 00 000 0 00 246888888854 6554 2233467899999999999
Q ss_pred EEE
Q 007620 191 ITS 193 (595)
Q Consensus 191 ~~~ 193 (595)
|..
T Consensus 464 ~i~ 466 (591)
T PRK13616 464 MII 466 (591)
T ss_pred EEE
Confidence 986
No 40
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.77 E-value=4.4e-07 Score=83.92 Aligned_cols=147 Identities=13% Similarity=0.277 Sum_probs=89.2
Q ss_pred ccceEEccCCCEEEEEEecc--cccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVD--EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~--~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.....|+|+|+.|++...+. +......+..+||.++..+.....+.-...+ .+..++|+|+|+.+++..-.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g~--- 80 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYGS--- 80 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEcc---
Confidence 55689999999999988742 1111112357899998877665555322221 47799999999998775210
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecCCCCeeeeeEECCCCCeE
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTPAVYTAVEPSPDQKYV 189 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt~~~~~~~~~~SpDg~~l 189 (595)
....+.++|+.++ ...+. ......+.|||+|++|
T Consensus 81 --------------------------------------------~~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 81 --------------------------------------------MPAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFL 115 (194)
T ss_pred --------------------------------------------CCcccEEEcCcccEeEeec-CCCceEEEECCCCCEE
Confidence 0012333344332 22232 2223468999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
++..... ...+|.+||....+.-...+.+ ....+.|+|||+.
T Consensus 116 ~~~g~~n----------~~G~l~~wd~~~~~~i~~~~~~--------------~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 116 VLAGFGN----------LNGDLEFWDVRKKKKISTFEHS--------------DATDVEWSPDGRY 157 (194)
T ss_pred EEEEccC----------CCcEEEEEECCCCEEeeccccC--------------cEEEEEEcCCCCE
Confidence 9986432 1357889998844332211111 1235899999995
No 41
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=4.9e-05 Score=73.41 Aligned_cols=305 Identities=15% Similarity=0.129 Sum_probs=155.6
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..+|+..+|.. ..|+...+..........-..|+|++++|+-+...++ .+.-..|.+|.+.|+...+-.....
T Consensus 15 s~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-----~ggvaay~iD~~~G~Lt~ln~~~~~ 87 (346)
T COG2706 15 SQGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-----EGGVAAYRIDPDDGRLTFLNRQTLP 87 (346)
T ss_pred CCceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEecCC-----cCcEEEEEEcCCCCeEEEeeccccC
Confidence 35778888752 3555444433334445777899999998766554322 3456677777777887766332211
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
......+..+++|+.|+...-.. +. + .++ +...++... ...++. .+
T Consensus 88 --g~~p~yvsvd~~g~~vf~AnY~~-g~------------v-----------~v~----p~~~dG~l~---~~v~~~-~h 133 (346)
T COG2706 88 --GSPPCYVSVDEDGRFVFVANYHS-GS------------V-----------SVY----PLQADGSLQ---PVVQVV-KH 133 (346)
T ss_pred --CCCCeEEEECCCCCEEEEEEccC-ce------------E-----------EEE----EcccCCccc---cceeee-ec
Confidence 00113456778888776642110 00 0 000 000011000 001111 11
Q ss_pred C-CC-CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g-~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
. .| ..+|-+. -.....+.|||++|++..... .++++++++.|.........+. | .
T Consensus 134 ~g~~p~~rQ~~~--h~H~a~~tP~~~~l~v~DLG~------------Dri~~y~~~dg~L~~~~~~~v~---~------G 190 (346)
T COG2706 134 TGSGPHERQESP--HVHSANFTPDGRYLVVPDLGT------------DRIFLYDLDDGKLTPADPAEVK---P------G 190 (346)
T ss_pred CCCCCCccccCC--ccceeeeCCCCCEEEEeecCC------------ceEEEEEcccCccccccccccC---C------C
Confidence 1 11 2222221 134678999999998886532 3788888876655444332211 1 1
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc---c------cCccccceeecCCCcE
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---K------LDLRFRSVSWCDDSLA 312 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~---~------~~~~~~~~~wspDg~~ 312 (595)
.|+|-+.+.|+++. .|.+.-+ .+.+.++..++. .|+.+.|. . .....+.+..|+||+.
T Consensus 191 ~GPRHi~FHpn~k~-aY~v~EL-----------~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF 257 (346)
T COG2706 191 AGPRHIVFHPNGKY-AYLVNEL-----------NSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF 257 (346)
T ss_pred CCcceEEEcCCCcE-EEEEecc-----------CCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence 45678999999983 4444211 223333333122 23444332 1 1123456777999997
Q ss_pred EEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCC
Q 007620 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~ 392 (595)
|+...... ....++.+|.++ +..+.+........ .|. .+..++.|+.|++..++.. ...+|
T Consensus 258 LYasNRg~-dsI~~f~V~~~~--g~L~~~~~~~teg~--~PR--~F~i~~~g~~Liaa~q~sd--~i~vf---------- 318 (346)
T COG2706 258 LYASNRGH-DSIAVFSVDPDG--GKLELVGITPTEGQ--FPR--DFNINPSGRFLIAANQKSD--NITVF---------- 318 (346)
T ss_pred EEEecCCC-CeEEEEEEcCCC--CEEEEEEEeccCCc--CCc--cceeCCCCCEEEEEccCCC--cEEEE----------
Confidence 66543222 234566777776 33333322222111 111 1678899998887765431 23333
Q ss_pred CcceeEeeecCCCceeee
Q 007620 393 NIPFLDLFDINTGSKERI 410 (595)
Q Consensus 393 ~~~~l~~~d~~~g~~~~l 410 (595)
+.|-++|+.+.+
T Consensus 319 ------~~d~~TG~L~~~ 330 (346)
T COG2706 319 ------ERDKETGRLTLL 330 (346)
T ss_pred ------EEcCCCceEEec
Confidence 567778876655
No 42
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.69 E-value=1e-06 Score=81.56 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=52.1
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.+||.++.. +.....+. +.....+...+|||+|+++|.+... ....+-++++++.....+ ...
T Consensus 39 ~~l~~~~~~----~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g~--------~~~~v~lyd~~~~~i~~~---~~~- 101 (194)
T PF08662_consen 39 FELFYLNEK----NIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYGS--------MPAKVTLYDVKGKKIFSF---GTQ- 101 (194)
T ss_pred EEEEEEecC----CCccceee-ccCCCceEEEEECcCCCEEEEEEcc--------CCcccEEEcCcccEeEee---cCC-
Confidence 456666665 45554554 3333358999999999999988642 223667778863333333 221
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+.|||+|+.|+..
T Consensus 102 ---~~n~i~wsP~G~~l~~~ 118 (194)
T PF08662_consen 102 ---PRNTISWSPDGRFLVLA 118 (194)
T ss_pred ---CceEEEECCCCCEEEEE
Confidence 34578999999998885
No 43
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.51 E-value=0.00052 Score=68.76 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=67.7
Q ss_pred CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEec-CCCCCCCCccccC
Q 007620 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDPPKKTMVP 119 (595)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~-~~~~~~~~~~~~~ 119 (595)
|+.+ +|+.+.... ...+.|+++|.++++......... .... ..||||+.|+.... -+|...
T Consensus 11 ~~~~-v~V~d~~~~----~~~~~v~ViD~~~~~v~g~i~~G~-----~P~~-~~spDg~~lyva~~~~~R~~~------- 72 (352)
T TIGR02658 11 DARR-VYVLDPGHF----AATTQVYTIDGEAGRVLGMTDGGF-----LPNP-VVASDGSFFAHASTVYSRIAR------- 72 (352)
T ss_pred CCCE-EEEECCccc----ccCceEEEEECCCCEEEEEEEccC-----CCce-eECCCCCEEEEEecccccccc-------
Confidence 5555 676653100 113789999999887433222221 1123 49999999888632 111100
Q ss_pred CCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCCC---C-----eeeeeEECCCCCeE
Q 007620 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP---A-----VYTAVEPSPDQKYV 189 (595)
Q Consensus 120 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~~---~-----~~~~~~~SpDg~~l 189 (595)
| + ....|-++|+ +.+ ...|..+ . ....+.+||||++|
T Consensus 73 ----------G-----------------~------~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l 119 (352)
T TIGR02658 73 ----------G-----------------K------RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTL 119 (352)
T ss_pred ----------C-----------------C------CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEE
Confidence 1 1 1345667777 554 3334321 1 22378999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
++... .| ...+-++|+.+++.
T Consensus 120 ~V~n~-~p----------~~~V~VvD~~~~kv 140 (352)
T TIGR02658 120 LFYQF-SP----------SPAVGVVDLEGKAF 140 (352)
T ss_pred EEecC-CC----------CCEEEEEECCCCcE
Confidence 87742 22 24788999986654
No 44
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.50 E-value=3.4e-05 Score=74.52 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=37.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccC-CCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES-PDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~-~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+-..+|||||++||--+ +.+-+-+.|+.+..+...-+. .. -+..+.|||||+.|+-.
T Consensus 117 ~Vl~~~fsp~g~~l~tGs----------GD~TvR~WD~~TeTp~~t~KgH~~-----WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGS----------GDTTVRLWDLDTETPLFTCKGHKN-----WVLCVAWSPDGKKIASG 175 (480)
T ss_pred cEEEEEecCCCceEEecC----------CCceEEeeccCCCCcceeecCCcc-----EEEEEEECCCcchhhcc
Confidence 356789999999987643 223444447766554332221 22 35588999999998874
No 45
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=0.0015 Score=63.38 Aligned_cols=174 Identities=12% Similarity=0.020 Sum_probs=91.2
Q ss_pred ceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc----ccCccccceeecCCCcEEEEEEeeccc
Q 007620 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 247 ~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~----~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
....||++. |+. .|- ..|.++++++ +.|...... ........+.|.|+++..+... .-..
T Consensus 150 a~~tP~~~~-l~v---~DL--------G~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-EL~s 213 (346)
T COG2706 150 ANFTPDGRY-LVV---PDL--------GTDRIFLYDL---DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-ELNS 213 (346)
T ss_pred eeeCCCCCE-EEE---eec--------CCceEEEEEc---ccCccccccccccCCCCCcceEEEcCCCcEEEEEe-ccCC
Confidence 456888873 322 222 2356666675 333433221 2222345688999998522221 1123
Q ss_pred ceEEEEEeCCCCCCCcEEEe-----ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCccee
Q 007620 323 QTRTWLVCPGSKDVAPRVLF-----DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFL 397 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l 397 (595)
...+|.++..+ ++.+.|- ..++.. ..+...+..++||+.||+... +.....+
T Consensus 214 tV~v~~y~~~~--g~~~~lQ~i~tlP~dF~g---~~~~aaIhis~dGrFLYasNR--g~dsI~~---------------- 270 (346)
T COG2706 214 TVDVLEYNPAV--GKFEELQTIDTLPEDFTG---TNWAAAIHISPDGRFLYASNR--GHDSIAV---------------- 270 (346)
T ss_pred EEEEEEEcCCC--ceEEEeeeeccCccccCC---CCceeEEEECCCCCEEEEecC--CCCeEEE----------------
Confidence 44677777654 3444441 112211 112234788999999987753 2222223
Q ss_pred EeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEec
Q 007620 398 DLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (595)
Q Consensus 398 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~ 469 (595)
+++|..+|+.+.+........ .+.. -.|+++++.|+...+..++ -.+|.+|..+|+++.+..
T Consensus 271 f~V~~~~g~L~~~~~~~teg~--~PR~-------F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQ--FPRD-------FNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCc--CCcc-------ceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEeccc
Confidence 356766676544322111000 0111 2467777888777766555 558888877777766654
No 46
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.49 E-value=2.8e-05 Score=72.17 Aligned_cols=249 Identities=17% Similarity=0.153 Sum_probs=135.2
Q ss_pred eEEEecCCCCC-CC-CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 7 IGIHRLLPDDS-LG-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 7 ~~~~~~~~~~~-~g-~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
+.+.+|..++. -| ..++++++.. .++....|+||++ |+..+. + ..|.+.|+++|+.++.+-....
T Consensus 40 ii~W~L~~dd~~~G~~~r~~~GHsH--~v~dv~~s~dg~~-alS~sw-------D--~~lrlWDl~~g~~t~~f~GH~~- 106 (315)
T KOG0279|consen 40 IIVWKLTSDDIKYGVPVRRLTGHSH--FVSDVVLSSDGNF-ALSASW-------D--GTLRLWDLATGESTRRFVGHTK- 106 (315)
T ss_pred EEEEEeccCccccCceeeeeeccce--EecceEEccCCce-EEeccc-------c--ceEEEEEecCCcEEEEEEecCC-
Confidence 34445543322 33 4567776333 5889999999975 566544 2 4566669999887666533221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.+-+.++++|.+.|+-.+++. .|-+++.
T Consensus 107 ---dVlsva~s~dn~qivSGSrDk-------------------------------------------------Tiklwnt 134 (315)
T KOG0279|consen 107 ---DVLSVAFSTDNRQIVSGSRDK-------------------------------------------------TIKLWNT 134 (315)
T ss_pred ---ceEEEEecCCCceeecCCCcc-------------------------------------------------eeeeeee
Confidence 466889999999887643211 1222222
Q ss_pred CCC-eeecCC---CCeeeeeEECCCC-CeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccc
Q 007620 165 DGT-AKDFGT---PAVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (595)
Q Consensus 165 ~g~-~~~lt~---~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~ 239 (595)
-|. .-.+.. .+.+.-+.|||+. .-+++.... ...+-+||+.+-+.+...- +
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~------------DktvKvWnl~~~~l~~~~~------------g 190 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW------------DKTVKVWNLRNCQLRTTFI------------G 190 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC------------CceEEEEccCCcchhhccc------------c
Confidence 221 111111 2356678999985 333333321 2467889998766544211 1
Q ss_pred cccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc--CccccceeecCCCcEEEEEE
Q 007620 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~--~~~~~~~~wspDg~~l~~~~ 317 (595)
..........||||. +.. ..+ ...++++||+ . +.+.+... ...+....|||+.-+|+...
T Consensus 191 h~~~v~t~~vSpDGs--lca---sGg--------kdg~~~LwdL---~--~~k~lysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGS--LCA---SGG--------KDGEAMLWDL---N--EGKNLYSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred ccccEEEEEECCCCC--EEe---cCC--------CCceEEEEEc---c--CCceeEeccCCCeEeeEEecCCceeEeecc
Confidence 111123467899997 221 111 2357788887 3 22333332 23466788999887766543
Q ss_pred eecccceEEEEEeCCCCCCCcEEEeecccc-----cccCCCCCCCeeeCCCCCEEEEEe
Q 007620 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFE-----NVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
. ..|-+.|++++ +++.+.... .....|--..+.|++||+.|+...
T Consensus 253 ~-----~sIkIwdl~~~----~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 253 A-----TSIKIWDLESK----AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred C-----CceEEEeccch----hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 1 14666677763 222211111 001111112378999999887654
No 47
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.49 E-value=2e-06 Score=92.54 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=64.7
Q ss_pred CceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEeccccc--ccCCCceEEEEEECCCCceEeccc
Q 007620 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEED--NVSSCKLRVWIADAETGEAKPLFE 79 (595)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~--~~~~~~~~L~v~d~~~g~~~~lt~ 79 (595)
++.+.||+.+. ++..+++|. .. ....|+|||||+.|+|++....-. -......+||++++++++.++ .
T Consensus 376 d~~s~Lwv~~~-----gg~~~~lt~--g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~ 445 (591)
T PRK13616 376 DPASSLWVGPL-----GGVAVQVLE--GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--R 445 (591)
T ss_pred CcceEEEEEeC-----CCcceeeec--CC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--c
Confidence 35678999986 566688873 33 589999999999999986431000 000345799999999888775 3
Q ss_pred CCCccccccccceEEecCCcEEEEEe
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
... .++.++|||||++|+|+.
T Consensus 446 ~~g-----~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 446 VPG-----PISELQLSRDGVRAAMII 466 (591)
T ss_pred cCC-----CcCeEEECCCCCEEEEEE
Confidence 233 578999999999999974
No 48
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.45 E-value=0.00079 Score=68.27 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=72.3
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceE-EEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
..+.++|||++|+.+... ...+.+++++ .+.. +.+...+.. .+.....++|||+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~p~g~~ 139 (330)
T PRK11028 83 THISTDHQGRFLFSASYN------------ANCVSVSPLDKDGIPVAPIQIIEGL-----------EGCHSANIDPDNRT 139 (330)
T ss_pred eEEEECCCCCEEEEEEcC------------CCeEEEEEECCCCCCCCceeeccCC-----------CcccEeEeCCCCCE
Confidence 468899999999887532 1356677764 2211 111111100 11234668899873
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-----cc-ccCccccceeecCCCcEEEEEEeecccceEEEEE
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-----LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-----l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~ 329 (595)
++... ...+.+.+++. .+.+.... .. ........+.|+|||+.++.... ... .|.++
T Consensus 140 -l~v~~-----------~~~~~v~v~d~--~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-~~~--~v~v~ 202 (330)
T PRK11028 140 -LWVPC-----------LKEDRIRLFTL--SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-LNS--SVDVW 202 (330)
T ss_pred -EEEee-----------CCCCEEEEEEE--CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-CCC--EEEEE
Confidence 43321 12245666665 12222211 01 11122346789999987554421 123 55555
Q ss_pred eCCCCCCCcEEEeeccc-ccccCCCCC-CCeeeCCCCCEEEEEe
Q 007620 330 CPGSKDVAPRVLFDRVF-ENVYSDPGS-PMMTRTSTGTNVIAKI 371 (595)
Q Consensus 330 d~~~~~~~~~~l~~~~~-~~~~~~~~~-~~~~~~~dg~~l~~~~ 371 (595)
+++...++.+.+..... ......+.. ..+.++|||+++|+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 203 QLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred EEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 55421122232211100 000000000 0156789999888763
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.43 E-value=0.00035 Score=67.97 Aligned_cols=192 Identities=19% Similarity=0.200 Sum_probs=109.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.+....|+|+|+.|++... ...|.++++.+++. ..+..... .+..+.|+|+++.|+....
T Consensus 11 ~i~~~~~~~~~~~l~~~~~----------~g~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~---- 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG----------DGTIKVWDLETGELLRTLKGHTG-----PVRDVAASADGTYLASGSS---- 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeec----------CcEEEEEEeeCCCcEEEEecCCc-----ceeEEEECCCCCEEEEEcC----
Confidence 5888999999999887653 25666777776653 33322222 3458899999987776521
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC-CeeecCC-CCeeeeeEECCCCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-PAVYTAVEPSPDQK 187 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g-~~~~lt~-~~~~~~~~~SpDg~ 187 (595)
...|+++++ ++ ....+.. ......+.|+|+++
T Consensus 72 ---------------------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (289)
T cd00200 72 ---------------------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106 (289)
T ss_pred ---------------------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence 123445555 22 2333332 22456789999977
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (595)
.|+... . ...+.+||+..++ ...+.... .....+.|+|++. ++...
T Consensus 107 ~~~~~~-~------------~~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~--~l~~~----- 153 (289)
T cd00200 107 ILSSSS-R------------DKTIKVWDVETGKCLTTLRGHT-------------DWVNSVAFSPDGT--FVASS----- 153 (289)
T ss_pred EEEEec-C------------CCeEEEEECCCcEEEEEeccCC-------------CcEEEEEEcCcCC--EEEEE-----
Confidence 665553 1 2378899987443 33332111 1124577888865 22221
Q ss_pred CcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 267 DANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
.....+.+++. ..++.. .+......+..+.|+|++..++.... .+ .|.++|+..
T Consensus 154 ------~~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~--~i~i~d~~~ 208 (289)
T cd00200 154 ------SQDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DG--TIKLWDLST 208 (289)
T ss_pred ------cCCCcEEEEEc---cccccceeEecCccccceEEECCCcCEEEEecC--CC--cEEEEECCC
Confidence 11235666675 322332 23333345778999999976665432 23 577778765
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.40 E-value=0.00024 Score=69.08 Aligned_cols=241 Identities=16% Similarity=0.164 Sum_probs=132.9
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~ 84 (595)
.|.++++.. ......+.. ....+....|+|+++.|+.... ...|.++++.+++ ...+.....
T Consensus 32 ~i~i~~~~~---~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~-- 94 (289)
T cd00200 32 TIKVWDLET---GELLRTLKG--HTGPVRDVAASADGTYLASGSS----------DKTIRLWDLETGECVRTLTGHTS-- 94 (289)
T ss_pred EEEEEEeeC---CCcEEEEec--CCcceeEEEECCCCCEEEEEcC----------CCeEEEEEcCcccceEEEeccCC--
Confidence 577888872 223344442 2224568999999988877653 3578888887754 333322221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.+..+.|+++++.|+.... ...|.++++
T Consensus 95 ---~i~~~~~~~~~~~~~~~~~-------------------------------------------------~~~i~~~~~ 122 (289)
T cd00200 95 ---YVSSVAFSPDGRILSSSSR-------------------------------------------------DKTIKVWDV 122 (289)
T ss_pred ---cEEEEEEcCCCCEEEEecC-------------------------------------------------CCeEEEEEC
Confidence 4668899999776555310 123444454
Q ss_pred -CCCe-eecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCcccccc
Q 007620 165 -DGTA-KDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 165 -~g~~-~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~ 240 (595)
+++. ..+. .......+.|+|+++.|+.... ...+.+||+..++. ..+....
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~~~~------------ 177 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-------------DGTIKLWDLRTGKCVATLTGHT------------ 177 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-------------CCcEEEEEccccccceeEecCc------------
Confidence 2322 2222 2234568899999887766542 13688899875433 3322110
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-ccccCccccceeecCCCcEEEEEEee
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWY 319 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (595)
.....+.|+|+++. ++.. .....+.+++. ..++... +......+..+.|++++..++...
T Consensus 178 -~~i~~~~~~~~~~~-l~~~------------~~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 238 (289)
T cd00200 178 -GEVNSVAFSPDGEK-LLSS------------SSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLASGS-- 238 (289)
T ss_pred -cccceEEECCCcCE-EEEe------------cCCCcEEEEEC---CCCceecchhhcCCceEEEEEcCCCcEEEEEc--
Confidence 11346889999863 4332 11235666675 3223332 223344567789999977665543
Q ss_pred cccceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 320 KTSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 320 ~~~~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.++ .|+++++.++ .....+... .+.. +.|+++++.++...
T Consensus 239 ~~~--~i~i~~~~~~-~~~~~~~~~~~~i~~---------~~~~~~~~~l~~~~ 280 (289)
T cd00200 239 EDG--TIRVWDLRTG-ECVQTLSGHTNSVTS---------LAWSPDGKRLASGS 280 (289)
T ss_pred CCC--cEEEEEcCCc-eeEEEccccCCcEEE---------EEECCCCCEEEEec
Confidence 123 5777777652 111222211 1222 78888888766543
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.40 E-value=1.3e-05 Score=78.00 Aligned_cols=230 Identities=15% Similarity=0.206 Sum_probs=120.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....||||.++|.-.... ..+++.|+.+|+.+.......+ -.+++..|-|||.+++...++ +
T Consensus 271 ~V~yi~wSPDdryLlaCg~~----------e~~~lwDv~tgd~~~~y~~~~~---~S~~sc~W~pDg~~~V~Gs~d-r-- 334 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFD----------EVLSLWDVDTGDLRHLYPSGLG---FSVSSCAWCPDGFRFVTGSPD-R-- 334 (519)
T ss_pred ceEEEEECCCCCeEEecCch----------HheeeccCCcchhhhhcccCcC---CCcceeEEccCCceeEecCCC-C--
Confidence 47888999999998776532 3388889999998877654421 145689999999997775443 1
Q ss_pred CCCccccCCCCeeeecCccccc-------ccccccccccCcCCccceEEeecceEEEEcCCC-Cee-ecCCCCeeeeeEE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNII-------ISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK-DFGTPAVYTAVEP 182 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~-~lt~~~~~~~~~~ 182 (595)
..+....+|+.. .++++ ++.....++.........++..++... .-+ .++....++++..
T Consensus 335 ----------~i~~wdlDgn~~~~W~gvr~~~v~-dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~i 403 (519)
T KOG0293|consen 335 ----------TIIMWDLDGNILGNWEGVRDPKVH-DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSI 403 (519)
T ss_pred ----------cEEEecCCcchhhcccccccceeE-EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEE
Confidence 111111122100 00111 110111111111111234555555532 222 3444456789999
Q ss_pred CCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEe
Q 007620 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 183 SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (595)
|.||+++++.-. ..++++||++.. +.+.... |.+. |...| -..
T Consensus 404 S~d~k~~LvnL~-------------~qei~LWDl~e~--~lv~kY~----------Ghkq----------~~fiI--rSC 446 (519)
T KOG0293|consen 404 SKDGKLALVNLQ-------------DQEIHLWDLEEN--KLVRKYF----------GHKQ----------GHFII--RSC 446 (519)
T ss_pred cCCCcEEEEEcc-------------cCeeEEeecchh--hHHHHhh----------cccc----------cceEE--Eec
Confidence 999998887743 347999998722 2221111 1100 11000 011
Q ss_pred ecCCCccccc--CCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcE-EEEEEeecccceEEEEEe
Q 007620 263 QDRGDANVEV--SPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVC 330 (595)
Q Consensus 263 ~d~~~~~~~~--~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~L~~~d 330 (595)
..+++....+ ...+++|+|+. .. |++- .|......+..++|.|.... ++.. .+++..+||..+
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr--~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASa--sDDgtIRIWg~~ 513 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHR--IS-GKLLAVLSGHSKTVNCVSWNPADPEMFASA--SDDGTIRIWGPS 513 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEc--cC-CceeEeecCCcceeeEEecCCCCHHHhhcc--CCCCeEEEecCC
Confidence 1222211111 23457888875 33 3433 35555556778999997653 5543 344556777543
No 52
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=7e-05 Score=77.08 Aligned_cols=251 Identities=14% Similarity=0.185 Sum_probs=144.0
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCC
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPD 82 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~ 82 (595)
...+||++-. +|+..+|..+. ...+....|+|+|++||.-.. + ..+.++|++..+ .+.+.. ..
T Consensus 196 g~~vylW~~~----s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~--------~--g~v~iwD~~~~k~~~~~~~-~h 259 (484)
T KOG0305|consen 196 GQSVYLWSAS----SGSVTELCSFG-EELVTSVKWSPDGSHLAVGTS--------D--GTVQIWDVKEQKKTRTLRG-SH 259 (484)
T ss_pred cceEEEEecC----CCceEEeEecC-CCceEEEEECCCCCEEEEeec--------C--CeEEEEehhhccccccccC-Cc
Confidence 3578999887 88888998764 447999999999999998764 2 345555876544 233322 11
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
...++.++|. +..+...... + .|...
T Consensus 260 ---~~rvg~laW~--~~~lssGsr~----------------------~---------------------------~I~~~ 285 (484)
T KOG0305|consen 260 ---ASRVGSLAWN--SSVLSSGSRD----------------------G---------------------------KILNH 285 (484)
T ss_pred ---CceeEEEecc--CceEEEecCC----------------------C---------------------------cEEEE
Confidence 1256788998 3322222110 1 11112
Q ss_pred cC-CC-C-eeec-CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEEeccCCCCccCCccc
Q 007620 163 SL-DG-T-AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCY 237 (595)
Q Consensus 163 d~-~g-~-~~~l-t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~~~~~~~~~~ 237 (595)
|+ .. . .+.+ .....+..++|++|+++++-..++ ..+++||.... ....+....
T Consensus 286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD-------------N~~~Iwd~~~~~p~~~~~~H~--------- 343 (484)
T KOG0305|consen 286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND-------------NVVFIWDGLSPEPKFTFTEHT--------- 343 (484)
T ss_pred EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCc-------------cceEeccCCCccccEEEeccc---------
Confidence 22 11 0 1101 112235689999999998866542 36888887432 233333321
Q ss_pred cccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEE
Q 007620 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 238 ~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (595)
..+..++|+|=.+..|+. .+|. ....+..++. .+ |+..........+..+.||+..+-|+..-
T Consensus 344 ----aAVKA~awcP~q~~lLAs----GGGs------~D~~i~fwn~--~~-g~~i~~vdtgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 344 ----AAVKALAWCPWQSGLLAT----GGGS------ADRCIKFWNT--NT-GARIDSVDTGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ----eeeeEeeeCCCccCceEE----cCCC------cccEEEEEEc--CC-CcEecccccCCceeeEEEcCCCCEEEEec
Confidence 224568888877653432 3331 2235666775 33 34444445566788999999988777654
Q ss_pred eecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
.+......||.+.-- .....+..+...-. .+.|+|||..++..+.+
T Consensus 407 G~s~n~i~lw~~ps~---~~~~~l~gH~~RVl-------~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 407 GYSENQITLWKYPSM---KLVAELLGHTSRVL-------YLALSPDGETIVTGAAD 452 (484)
T ss_pred CCCCCcEEEEecccc---ceeeeecCCcceeE-------EEEECCCCCEEEEeccc
Confidence 333344567766432 12333433322211 18999999998877643
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.36 E-value=0.0016 Score=65.81 Aligned_cols=153 Identities=21% Similarity=0.312 Sum_probs=84.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+...++||||+++|-+.. ...++++|-++|+..-...... ...+.+-.+.||||+++|+-...+....
T Consensus 192 FV~~VRysPDG~~Fat~gs----------Dgki~iyDGktge~vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS----------DGKIYIYDGKTGEKVGELEDSD-AHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred ceeeEEECCCCCeEEEecC----------CccEEEEcCCCccEEEEecCCC-CccccEEEEEECCCCceEEEecCCceEE
Confidence 4678899999998776653 3678999999988554443221 1122455899999999988764322111
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceE-EeecceEEEEcCCCCeeecCC------------CCeee
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFD-YYTTAQLVLGSLDGTAKDFGT------------PAVYT 178 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~lt~------------~~~~~ 178 (595)
.|..... +- .+++. ....-+..... .....+|..+++.|.+.-|.. ...++
T Consensus 261 -----------IWdVs~~-sl--v~t~~--~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 261 -----------IWDVSTN-SL--VSTWP--MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred -----------EEEeecc-ce--EEEee--cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 1111110 00 00000 00000011110 013567777777775443321 12356
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
.+..||||++|+-.+.+ ..|.-|+...+..-.+
T Consensus 325 aLtv~~d~~~i~SgsyD-------------G~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 325 ALTVSPDGKTIYSGSYD-------------GHINSWDSGSGTSDRL 357 (603)
T ss_pred EEEEcCCCCEEEeeccC-------------ceEEEEecCCcccccc
Confidence 88999999988765432 3577788776654443
No 54
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.36 E-value=0.00096 Score=66.89 Aligned_cols=90 Identities=16% Similarity=-0.027 Sum_probs=50.0
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEeccc--ccccCCCceEEEEEECCCCceE-ecccCC
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDE--EDNVSSCKLRVWIADAETGEAK-PLFESP 81 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~--~~~~~~~~~~L~v~d~~~g~~~-~lt~~~ 81 (595)
..+++.|.. +++.. ..++.+..... .+||||+.|+.....-+ ..| +....|-++|+++++.. .|- .+
T Consensus 27 ~~v~ViD~~----~~~v~--g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G--~~~d~V~v~D~~t~~~~~~i~-~p 96 (352)
T TIGR02658 27 TQVYTIDGE----AGRVL--GMTDGGFLPNP-VVASDGSFFAHASTVYSRIARG--KRTDYVEVIDPQTHLPIADIE-LP 96 (352)
T ss_pred ceEEEEECC----CCEEE--EEEEccCCCce-eECCCCCEEEEEeccccccccC--CCCCEEEEEECccCcEEeEEc-cC
Confidence 456666665 44332 22234433444 59999998877654100 000 23466888899988743 331 11
Q ss_pred Cc---cccccccceEEecCCcEEEEE
Q 007620 82 DI---CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 82 ~~---~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.. ........+..||||+.|++.
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEe
Confidence 10 001112378999999998875
No 55
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.32 E-value=1.7e-05 Score=75.07 Aligned_cols=132 Identities=24% Similarity=0.310 Sum_probs=86.3
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~ 114 (595)
-.+|||+|++||-++. ..|.+.|..+=+..+|+..-+ .+.-+.|+.|...|+.....
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cld-----ki~yieW~ads~~ilC~~yk------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLD-----KIVYIEWKADSCHILCVAYK------- 69 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHH-----Hhhheeeeccceeeeeeeec-------
Confidence 4689999999998863 578888888777777754433 46688999999988885321
Q ss_pred ccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-Cee-ecCCC-CeeeeeEECCCCCeEEE
Q 007620 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK-DFGTP-AVYTAVEPSPDQKYVLI 191 (595)
Q Consensus 115 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~-~lt~~-~~~~~~~~SpDg~~l~~ 191 (595)
...+.+.++.. +.. .|..+ ......+|||||+.|+.
T Consensus 70 -----------------------------------------~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 70 -----------------------------------------DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred -----------------------------------------cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 01122233311 211 12122 23457899999999998
Q ss_pred EEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
++. |..+|-+|.+.+.+...+..- +.+...+++.|||+.
T Consensus 109 tse------------F~lriTVWSL~t~~~~~~~~p-------------K~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 109 TSE------------FDLRITVWSLNTQKGYLLPHP-------------KTNVKGYAFHPDGQF 147 (447)
T ss_pred eec------------ceeEEEEEEeccceeEEeccc-------------ccCceeEEECCCCce
Confidence 864 345888999887776665321 122346788999983
No 56
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.30 E-value=0.0015 Score=68.76 Aligned_cols=250 Identities=17% Similarity=0.157 Sum_probs=138.2
Q ss_pred ceeeeE-EEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 3 FFTGIG-IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 3 ~~~~~~-~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
|.++++ |+.|. +-....-..... ..+....|+--|.+|||-+. +-.||-|++..+. ...+ +
T Consensus 284 FssG~f~LyelP----~f~lih~LSis~-~~I~t~~~N~tGDWiA~g~~---------klgQLlVweWqsE-sYVl---K 345 (893)
T KOG0291|consen 284 FSSGEFGLYELP----DFNLIHSLSISD-QKILTVSFNSTGDWIAFGCS---------KLGQLLVWEWQSE-SYVL---K 345 (893)
T ss_pred ecCCeeEEEecC----CceEEEEeeccc-ceeeEEEecccCCEEEEcCC---------ccceEEEEEeecc-ceee---e
Confidence 455555 66665 333322221222 25778899999999999764 2467777766432 2222 1
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
.......+..+..||||++|+-... +|+ +-+
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~e----------------------DgK---------------------------VKv 376 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAE----------------------DGK---------------------------VKV 376 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccC----------------------CCc---------------------------EEE
Confidence 1100113568999999998876422 121 112
Q ss_pred EcC-CC-CeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccc
Q 007620 162 GSL-DG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCY 237 (595)
Q Consensus 162 ~d~-~g-~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~ 237 (595)
+|. +| -..-.++.. .+..+.|+..|+.|+..+.+ ..+-.||+.-.+. +..+. |.
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD-------------GtVRAwDlkRYrNfRTft~-P~-------- 434 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD-------------GTVRAWDLKRYRNFRTFTS-PE-------- 434 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecC-------------CeEEeeeecccceeeeecC-CC--------
Confidence 222 22 122233332 45688999999988877653 2566677664332 33221 10
Q ss_pred cccccCCCCc-eeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-ccccCccccceeecCCCcEEEE
Q 007620 238 NSVREGMRSI-SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVN 315 (595)
Q Consensus 238 ~~~~~~~~~~-~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~~~~~~wspDg~~l~~ 315 (595)
+..+ ...-|-.+.|+.+..+|. =.|++|+. ..|+... |...++.+....|+|+|..|+.
T Consensus 435 ------p~QfscvavD~sGelV~AG~~d~----------F~IfvWS~---qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 435 ------PIQFSCVAVDPSGELVCAGAQDS----------FEIFVWSV---QTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ------ceeeeEEEEcCCCCEEEeeccce----------EEEEEEEe---ecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 1111 112221122444422221 15777786 3344444 5556777888899999999988
Q ss_pred EEeecccceEEEEEeCCCCCCCcEEE-eecccccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 316 ETWYKTSQTRTWLVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 316 ~~~~~~~~~~L~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
.+|.+ ..++|-+=-.. ++.+.| ...++.. +.+.|||+.|++...+
T Consensus 496 ~SWDk--TVRiW~if~s~--~~vEtl~i~sdvl~---------vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 496 GSWDK--TVRIWDIFSSS--GTVETLEIRSDVLA---------VSFRPDGKELAVATLD 541 (893)
T ss_pred ccccc--eEEEEEeeccC--ceeeeEeeccceeE---------EEEcCCCCeEEEEEec
Confidence 88754 34777653332 233444 2344444 8899999999887653
No 57
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=0.0001 Score=72.95 Aligned_cols=227 Identities=13% Similarity=0.155 Sum_probs=128.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccC--CCccccccccceEEecCCcEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES--PDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~--~~~~~~~~~~~~~Wspdg~~l~~~~~~~~ 109 (595)
.+...+|.|.-.. +.++.. ++.-+||.+|-+.+. .|+.. ..- .+....++|+|+..+|++
T Consensus 215 ~I~sv~FHp~~pl-llvaG~-------d~~lrifqvDGk~N~--~lqS~~l~~f----Pi~~a~f~p~G~~~i~~s---- 276 (514)
T KOG2055|consen 215 GITSVQFHPTAPL-LLVAGL-------DGTLRIFQVDGKVNP--KLQSIHLEKF----PIQKAEFAPNGHSVIFTS---- 276 (514)
T ss_pred CceEEEecCCCce-EEEecC-------CCcEEEEEecCccCh--hheeeeeccC----ccceeeecCCCceEEEec----
Confidence 5888999998864 455543 456778877755544 33221 211 356788999999555541
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-----CeeeeeEEC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-----AVYTAVEPS 183 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-----~~~~~~~~S 183 (595)
| ++..+|.+|+ +++..+|... .....|..|
T Consensus 277 --------------------~------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS 312 (514)
T KOG2055|consen 277 --------------------G------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS 312 (514)
T ss_pred --------------------c------------------------cceEEEEeeccccccccccCCCCcccchhheeEec
Confidence 1 1245778888 6666655432 244689999
Q ss_pred CCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccC-CCCceeecCCCeeEEEEEe
Q 007620 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 184 pDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~wspdg~~~l~~~~~ 262 (595)
||+++|++.... ..|+++...+++. |..... ++ ...+.|+.||+. |+..
T Consensus 313 hd~~fia~~G~~-------------G~I~lLhakT~el--i~s~Ki------------eG~v~~~~fsSdsk~-l~~~-- 362 (514)
T KOG2055|consen 313 HDSNFIAIAGNN-------------GHIHLLHAKTKEL--ITSFKI------------EGVVSDFTFSSDSKE-LLAS-- 362 (514)
T ss_pred CCCCeEEEcccC-------------ceEEeehhhhhhh--hheeee------------ccEEeeEEEecCCcE-EEEE--
Confidence 999999988643 2466666554431 111110 11 356889989863 4332
Q ss_pred ecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccc--cceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCc
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRF--RSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~--~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~ 338 (595)
.....+|++++ . ....+. ..++.+ ..++-|++|.+|+..+ +.+...||-.+-.-.+..|
T Consensus 363 ----------~~~GeV~v~nl---~--~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS--~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 363 ----------GGTGEVYVWNL---R--QNSCLHRFVDDGSVHGTSLCISLNGSYLATGS--DSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred ----------cCCceEEEEec---C--CcceEEEEeecCccceeeeeecCCCceEEecc--CcceEEEeccchhhccCCC
Confidence 22347788886 2 323222 223332 3566678888777654 3454455543311111456
Q ss_pred EEEeec-ccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 339 RVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 339 ~~l~~~-~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
+.+..- +..-.+. .+++++|++.|++.+.
T Consensus 426 kPik~~dNLtt~It-----sl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 426 KPIKTVDNLTTAIT-----SLQFNHDAQILAIASR 455 (514)
T ss_pred Cchhhhhhhheeee-----eeeeCcchhhhhhhhh
Confidence 665211 1111111 2889999998876653
No 58
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.27 E-value=0.00019 Score=73.33 Aligned_cols=266 Identities=13% Similarity=0.081 Sum_probs=117.3
Q ss_pred eeEEEecCCCCCCCC-ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.+.||. +++ .+++. .+.......+||||++|+.... ...++.++|.++.+..+........
T Consensus 59 ~vsviD~~----~~~~v~~i~---~G~~~~~i~~s~DG~~~~v~n~---------~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 59 TVSVIDLA----TGKVVATIK---VGGNPRGIAVSPDGKYVYVANY---------EPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp EEEEEETT----SSSEEEEEE----SSEEEEEEE--TTTEEEEEEE---------ETTEEEEEETTT--EEEEEE--EE-
T ss_pred eEEEEECC----cccEEEEEe---cCCCcceEEEcCCCCEEEEEec---------CCCceeEeccccccceeeccccccc
Confidence 46667776 343 34454 4446788999999998855442 2478999999888754432211100
Q ss_pred ---ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 85 ---LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 85 ---~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
....+..+.-+|.....++... ...++|+
T Consensus 123 ~~~~~~Rv~aIv~s~~~~~fVv~lk------------------------------------------------d~~~I~v 154 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGRPEFVVNLK------------------------------------------------DTGEIWV 154 (369)
T ss_dssp TTTS---EEEEEE-SSSSEEEEEET------------------------------------------------TTTEEEE
T ss_pred ccccCCCceeEEecCCCCEEEEEEc------------------------------------------------cCCeEEE
Confidence 0001122333344443333210 1357888
Q ss_pred EcC-CCC---eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccC-CCCccCCcc
Q 007620 162 GSL-DGT---AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPVC 236 (595)
Q Consensus 162 ~d~-~g~---~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~-~~~~~~~~~ 236 (595)
+|. +.. .+.+..+.+..+..|+|||++++...... ..+-++|.++++...+.+. ......+.
T Consensus 155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s------------n~i~viD~~~~k~v~~i~~g~~p~~~~~- 221 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS------------NKIAVIDTKTGKLVALIDTGKKPHPGPG- 221 (369)
T ss_dssp EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG------------TEEEEEETTTTEEEEEEE-SSSBEETTE-
T ss_pred EEeccccccceeeecccccccccccCcccceeeeccccc------------ceeEEEeeccceEEEEeecccccccccc-
Confidence 887 332 22333344566889999999998876543 2778889887665443221 11000000
Q ss_pred ccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEE
Q 007620 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (595)
Q Consensus 237 ~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~ 316 (595)
.....-...+.|...+....+ +..... +.+.+++. .+-...+.+. ..+....+.-+||++.+..+
T Consensus 222 -~~~php~~g~vw~~~~~~~~~-~~~ig~----------~~v~v~d~--~~wkvv~~I~-~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 222 -ANFPHPGFGPVWATSGLGYFA-IPLIGT----------DPVSVHDD--YAWKVVKTIP-TQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp -EEEEETTTEEEEEEEBSSSSE-EEEEE------------TTT-STT--TBTSEEEEEE--SSSS--EE--TT-SEEEEE
T ss_pred -ccccCCCcceEEeecccccee-cccccC----------Cccccchh--hcCeEEEEEE-CCCCcceeecCCCCccEEee
Confidence 000000011234322211100 000000 11111221 0110112222 22222556779999987766
Q ss_pred EeecccceEEEEEeCCCCCCCcEEEe-ecc--cccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 317 TWYKTSQTRTWLVCPGSKDVAPRVLF-DRV--FENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 317 ~~~~~~~~~L~~~d~~~~~~~~~~l~-~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
.........|.++|..+.+ ..+.+. ... +.+ +.|++||+.+|++..+
T Consensus 287 ~~~~~~~~~v~viD~~tl~-~~~~i~~~~~~~~~h---------~ef~~dG~~v~vS~~~ 336 (369)
T PF02239_consen 287 TFLNPDADTVQVIDKKTLK-VVKTITPGPGKRVVH---------MEFNPDGKEVWVSVWD 336 (369)
T ss_dssp -TT-SSHT-EEEEECCGTE-EEE-HHHHHT--EEE---------EEE-TTSSEEEEEEE-
T ss_pred ccCCCCCceEEEEECcCcc-eeEEEeccCCCcEec---------cEECCCCCEEEEEEec
Confidence 2222234589999988731 111221 111 323 7999999999998764
No 59
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.21 E-value=6.1e-05 Score=82.08 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=38.1
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC------C--CCceEecccCCC----ccccccccceEEecCCc
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA------E--TGEAKPLFESPD----ICLNAVFGSFVWVNNST 99 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~------~--~g~~~~lt~~~~----~~~~~~~~~~~Wspdg~ 99 (595)
.+...+|||||++||+-+. +....||-... - +|...-+..... .+....+..+.|+||+.
T Consensus 71 sv~CVR~S~dG~~lAsGSD--------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSD--------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred ceeEEEECCCCCeEeeccC--------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 4778899999999998663 34456676652 0 111111110000 00112456899999999
Q ss_pred EEEEE
Q 007620 100 LLIFT 104 (595)
Q Consensus 100 ~l~~~ 104 (595)
+|+-.
T Consensus 143 ~lvS~ 147 (942)
T KOG0973|consen 143 LLVSV 147 (942)
T ss_pred EEEEe
Confidence 88775
No 60
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.18 E-value=0.0042 Score=63.30 Aligned_cols=236 Identities=9% Similarity=0.058 Sum_probs=107.8
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC-ceEEEecc---CCCCccCCccccccccCCCCceeec
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCD---LPPAEDIPVCYNSVREGMRSISWRA 251 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~wsp 251 (595)
....++.+|||++|+++.... ..+.++++.. +....... .......+. .-.....-...++|
T Consensus 88 ~p~~i~~~~~g~~l~vany~~------------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~--rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGG------------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD--RQEGPHPHQVVFSP 153 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTSEEEEEEEEEESEEEESSTT--TTSSTCEEEEEE-T
T ss_pred CcEEEEEecCCCEEEEEEccC------------CeEEEEEccCCcccceeeeecccCCCCCccc--ccccccceeEEECC
Confidence 334688999999999886432 3566776653 44333211 100000000 00001122467899
Q ss_pred CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee---cc-ccCccccceeecCCCcEEEEEEeecccceEEE
Q 007620 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (595)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~---l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~ 327 (595)
||+. |+.. |- ..+.+++++.+. .+++... +. ........+.|+|||+.++... .... .|.
T Consensus 154 dg~~-v~v~---dl--------G~D~v~~~~~~~-~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~s~--~v~ 217 (345)
T PF10282_consen 154 DGRF-VYVP---DL--------GADRVYVYDIDD-DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-ELSN--TVS 217 (345)
T ss_dssp TSSE-EEEE---ET--------TTTEEEEEEE-T-TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TTTT--EEE
T ss_pred CCCE-EEEE---ec--------CCCEEEEEEEeC-CCceEEEeeccccccCCCCcEEEEcCCcCEEEEec-CCCC--cEE
Confidence 9983 4332 22 234555555411 1112222 11 1112245688999998654432 2223 455
Q ss_pred EEeCCCCCCCcEEEeecccc-cccC-CCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCC
Q 007620 328 LVCPGSKDVAPRVLFDRVFE-NVYS-DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (595)
Q Consensus 328 ~~d~~~~~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (595)
.++++...+..+.+...... ..+. ......+..+|||++||+..... ....+| .+|..+|
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf----------------~~d~~~g 279 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVF----------------DLDPATG 279 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEE----------------EECTTTT
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEE----------------EEecCCC
Confidence 55555211333333111000 0000 00011267899999998876431 122222 3444566
Q ss_pred ceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEec
Q 007620 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (595)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~ 469 (595)
+.+.+-..... -..+.. ..+++++++|++.....+. -.+|.+|.++|+++.+..
T Consensus 280 ~l~~~~~~~~~--G~~Pr~-------~~~s~~g~~l~Va~~~s~~-v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 280 TLTLVQTVPTG--GKFPRH-------FAFSPDGRYLYVANQDSNT-VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TEEEEEEEEES--SSSEEE-------EEE-TTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEE
T ss_pred ceEEEEEEeCC--CCCccE-------EEEeCCCCEEEEEecCCCe-EEEEEEeCCCCcEEEecc
Confidence 66554222110 011222 3578899988876654443 446667777888777654
No 61
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=4.3e-05 Score=75.55 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=81.2
Q ss_pred eEEEecCCCCCCCCceeeecCCCCC--cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
+|.+||. +++..+|..+-+.. .......||||+.||+... ...|+++...+++. |+..+
T Consensus 282 ~ysyDle----~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----------~G~I~lLhakT~el--i~s~K--- 342 (514)
T KOG2055|consen 282 LYSYDLE----TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----------NGHIHLLHAKTKEL--ITSFK--- 342 (514)
T ss_pred EEEeecc----ccccccccCCCCcccchhheeEecCCCCeEEEccc----------CceEEeehhhhhhh--hheee---
Confidence 7888998 77776665322222 4567789999998888643 47899998888873 32222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
+++.++.+.|+.||+.|+... ..+++|++|+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~-------------------------------------------------~~GeV~v~nl 373 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASG-------------------------------------------------GTGEVYVWNL 373 (514)
T ss_pred eccEEeeEEEecCCcEEEEEc-------------------------------------------------CCceEEEEec
Confidence 233678999999999877651 1346788888
Q ss_pred CC--CeeecCCCC-ee-eeeEECCCCCeEEEEEc
Q 007620 165 DG--TAKDFGTPA-VY-TAVEPSPDQKYVLITSM 194 (595)
Q Consensus 165 ~g--~~~~lt~~~-~~-~~~~~SpDg~~l~~~~~ 194 (595)
.. -.....+.+ .. ..++.|++|++++..+.
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccC
Confidence 43 233444333 32 47899999998887753
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.0012 Score=69.81 Aligned_cols=192 Identities=20% Similarity=0.263 Sum_probs=109.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc---eEecccCCCccccccccceEEecCCcEEEEEecCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~---~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~ 108 (595)
.+....|||||+.|+.... ++...+|. +.+++ .+.+... ...+..+.|+|||+.|+-...+
T Consensus 161 sv~~~~fs~~g~~l~~~~~--------~~~i~~~~--~~~~~~~~~~~l~~h-----~~~v~~~~fs~d~~~l~s~s~D- 224 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS--------DGLIRIWK--LEGIKSNLLRELSGH-----TRGVSDVAFSPDGSYLLSGSDD- 224 (456)
T ss_pred ceEEEEEcCCCCeEEEccC--------CCcEEEee--cccccchhhcccccc-----ccceeeeEECCCCcEEEEecCC-
Confidence 5667899999999888754 23344444 44444 2222111 1257799999999966554211
Q ss_pred CCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-C-C-Ceeec-CCCCeeeeeEECC
Q 007620 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D-G-TAKDF-GTPAVYTAVEPSP 184 (595)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~-g-~~~~l-t~~~~~~~~~~Sp 184 (595)
.+|.++++ . + ..+.| .....+..++|+|
T Consensus 225 ------------------------------------------------~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 225 ------------------------------------------------KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred ------------------------------------------------ceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 23444444 2 2 23334 2334567899999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEee
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (595)
+|+.|+..+. ...+.+||+.+++. +.+... ..+.....+++|+.. |+..
T Consensus 257 ~g~~i~Sgs~-------------D~tvriWd~~~~~~~~~l~~h-------------s~~is~~~f~~d~~~-l~s~--- 306 (456)
T KOG0266|consen 257 DGNLLVSGSD-------------DGTVRIWDVRTGECVRKLKGH-------------SDGISGLAFSPDGNL-LVSA--- 306 (456)
T ss_pred CCCEEEEecC-------------CCcEEEEeccCCeEEEeeecc-------------CCceEEEEECCCCCE-EEEc---
Confidence 9955554433 23788999987554 444322 122345678888873 2211
Q ss_pred cCCCcccccCCcceEEeccCCCCCCCCc---eeccccCc--cccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDL--RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 264 d~~~~~~~~~~~~~~~~~d~~~~~g~~~---~~l~~~~~--~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
.....+.+||. ..+.. +.+..... ......|+|+++.++... .++ .|-++|+..
T Consensus 307 ---------s~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~--~d~--~~~~w~l~~ 365 (456)
T KOG0266|consen 307 ---------SYDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS--LDR--TLKLWDLRS 365 (456)
T ss_pred ---------CCCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEec--CCC--eEEEEEccC
Confidence 22346777886 43341 23333222 367889999999876653 223 344455554
No 63
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.12 E-value=0.0012 Score=60.62 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=131.1
Q ss_pred CCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecC
Q 007620 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (595)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (595)
+|.-.+--+.+.. .++...+.||++.||... ..+|-++|+.++.+..+...... ...+....|--|
T Consensus 29 tG~C~rTiqh~ds-qVNrLeiTpdk~~LAaa~-----------~qhvRlyD~~S~np~Pv~t~e~h--~kNVtaVgF~~d 94 (311)
T KOG0315|consen 29 TGICSRTIQHPDS-QVNRLEITPDKKDLAAAG-----------NQHVRLYDLNSNNPNPVATFEGH--TKNVTAVGFQCD 94 (311)
T ss_pred cCeEEEEEecCcc-ceeeEEEcCCcchhhhcc-----------CCeeEEEEccCCCCCceeEEecc--CCceEEEEEeec
Confidence 4443332234555 788999999999988753 47788889999887655433221 124667888899
Q ss_pred CcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCCCee
Q 007620 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVY 177 (595)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~~~~ 177 (595)
|++++-... +| ...||-+..-...+.+....-+
T Consensus 95 grWMyTgse----------------------Dg-------------------------t~kIWdlR~~~~qR~~~~~spV 127 (311)
T KOG0315|consen 95 GRWMYTGSE----------------------DG-------------------------TVKIWDLRSLSCQRNYQHNSPV 127 (311)
T ss_pred CeEEEecCC----------------------Cc-------------------------eEEEEeccCcccchhccCCCCc
Confidence 998665321 11 1112211111111222222334
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCCee
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~ 256 (595)
..+...|+...|+.... ...|++||+.... ..++...+. ...+.+..-|||+.
T Consensus 128 n~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liPe~~------------~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 128 NTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIPEDD------------TSIQSLTVMPDGSM- 181 (311)
T ss_pred ceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCCCCC------------cceeeEEEcCCCcE-
Confidence 57788898777765532 2479999987553 333322111 11245666788873
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCce---eccc---cCccccceeecCCCcEEEEEEeecccceEEEEEe
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~---~l~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d 330 (595)
|+-+ +.+..+|+|++ ..+.... .+.+ ..+.+..-.+|||++.|+..+.. . .+++.+
T Consensus 182 l~a~------------nnkG~cyvW~l--~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd--k--tv~iwn 243 (311)
T KOG0315|consen 182 LAAA------------NNKGNCYVWRL--LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD--K--TVKIWN 243 (311)
T ss_pred EEEe------------cCCccEEEEEc--cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC--c--eEEEEe
Confidence 3322 44567888886 2211111 2222 22334567799999998875432 2 344444
Q ss_pred CCCCCCCcEEEe--ecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 331 PGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 331 ~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.++--+-.+.|. ++.+.+ -.+|.||++|+...
T Consensus 244 ~~~~~kle~~l~gh~rWvWd---------c~FS~dg~YlvTas 277 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWD---------CAFSADGEYLVTAS 277 (311)
T ss_pred cCCceeeEEEeecCCceEEe---------eeeccCccEEEecC
Confidence 444201113332 234444 56788999876554
No 64
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.11 E-value=0.00043 Score=68.86 Aligned_cols=274 Identities=13% Similarity=0.091 Sum_probs=138.3
Q ss_pred CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
..+....|+-||..||+-+. + ..+-+++..++.+..+-..+. ++-++.|+.+|.+|+-..-+...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~--------~--G~~riw~~~G~l~~tl~~Hkg-----PI~slKWnk~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSE--------D--GEARIWNKDGNLISTLGQHKG-----PIFSLKWNKKGTYILSGGVDGTT 300 (524)
T ss_pred CCcceEEecCCCCeEEEeec--------C--cEEEEEecCchhhhhhhccCC-----ceEEEEEcCCCCEEEeccCCccE
Confidence 35778999999999998653 2 344555766666666655444 67799999999988775322211
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEe-ecceEEEEcCCC--Ceee-cCCCCeeeeeEECCCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY-TTAQLVLGSLDG--TAKD-FGTPAVYTAVEPSPDQ 186 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~g--~~~~-lt~~~~~~~~~~SpDg 186 (595)
-+.. .-.|...+... -.. .... ++ .+.+..-|... ....|+++-+++ -.+. +.....+..+.|.|-|
T Consensus 301 ilwd---~~~g~~~q~f~-~~s--~~~l-DV--dW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 301 ILWD---AHTGTVKQQFE-FHS--APAL-DV--DWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred EEEe---ccCceEEEeee-ecc--CCcc-ce--EEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC
Confidence 1000 00000000000 000 0000 00 00011111110 223455555533 2222 2333345689999999
Q ss_pred CeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
+-|+-.+.+ ..+-+|+.. +.....+... ......+.|+|+|.. .. ..-.
T Consensus 372 ~LLaS~SdD-------------~TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v--~~--n~~~ 421 (524)
T KOG0273|consen 372 SLLASCSDD-------------GTLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPV--TS--NPNM 421 (524)
T ss_pred ceEEEecCC-------------CeeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCc--cC--CCcC
Confidence 988766543 245566643 2222222111 111234678888762 00 0011
Q ss_pred CCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecc
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~ 345 (595)
+...........+.+||+ ..|-....+++....+..+.|||+|+++++.+. ++ .+.+.+..++ .-.+...+..
T Consensus 422 ~~~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~--dg--~V~iws~~~~-~l~~s~~~~~ 494 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL--DG--CVHIWSTKTG-KLVKSYQGTG 494 (524)
T ss_pred CceEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCC--CC--eeEeccccch-heeEeecCCC
Confidence 111111234456677786 333233446566667888999999999988652 23 4555555552 1112222221
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 346 FENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 346 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
. ...++|+.+|..|.....+
T Consensus 495 ~--------Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 495 G--------IFELCWNAAGDKLGACASD 514 (524)
T ss_pred e--------EEEEEEcCCCCEEEEEecC
Confidence 1 1238999999988877643
No 65
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.11 E-value=0.0001 Score=71.96 Aligned_cols=195 Identities=15% Similarity=0.176 Sum_probs=108.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc--eEecccCCCccccccccceEEecCCcEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~ 109 (595)
.+-..+||++|++||-.+. +...-+|.+..+..- .+.+..... ++..+.||||+++|+-...+
T Consensus 226 EVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg~~-- 290 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACGFD-- 290 (519)
T ss_pred cEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEecCch--
Confidence 5788999999999988764 345667777655430 222222222 57789999999987653111
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCC-C--CeeeeeEECCC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-P--AVYTAVEPSPD 185 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~-~--~~~~~~~~SpD 185 (595)
..+.+.|+ +|+.+.+-. . ......+|-||
T Consensus 291 -----------------------------------------------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD 323 (519)
T KOG0293|consen 291 -----------------------------------------------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD 323 (519)
T ss_pred -----------------------------------------------HheeeccCCcchhhhhcccCcCCCcceeEEccC
Confidence 11344455 454443322 1 23458899999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|.+++..+.+ ..+..||++|..... +...+. .....++.++||+. ++.+ ..
T Consensus 324 g~~~V~Gs~d-------------r~i~~wdlDgn~~~~---W~gvr~---------~~v~dlait~Dgk~-vl~v-~~-- 374 (519)
T KOG0293|consen 324 GFRFVTGSPD-------------RTIIMWDLDGNILGN---WEGVRD---------PKVHDLAITYDGKY-VLLV-TV-- 374 (519)
T ss_pred CceeEecCCC-------------CcEEEecCCcchhhc---cccccc---------ceeEEEEEcCCCcE-EEEE-ec--
Confidence 9997665432 367888888764211 111000 01235677889985 4343 11
Q ss_pred CCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
...+.+++. .....+.+......+..+..|.||+.+...- .. ..+.+.|+..
T Consensus 375 ---------d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL--~~--qei~LWDl~e 426 (519)
T KOG0293|consen 375 ---------DKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNL--QD--QEIHLWDLEE 426 (519)
T ss_pred ---------ccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEc--cc--CeeEEeecch
Confidence 123444443 2112223555555677888999998533321 11 2455567653
No 66
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.07 E-value=0.0037 Score=63.30 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=43.4
Q ss_pred ccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccE
Q 007620 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 380 (595)
Q Consensus 301 ~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 380 (595)
+..+.+||||..++.... ++ .++++|-.+++ ....|-+..... .+...++|+||++.++.... +...+
T Consensus 193 V~~VRysPDG~~Fat~gs--Dg--ki~iyDGktge-~vg~l~~~~aHk----GsIfalsWsPDs~~~~T~Sa---Dkt~K 260 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGS--DG--KIYIYDGKTGE-KVGELEDSDAHK----GSIFALSWSPDSTQFLTVSA---DKTIK 260 (603)
T ss_pred eeeEEECCCCCeEEEecC--Cc--cEEEEcCCCcc-EEEEecCCCCcc----ccEEEEEECCCCceEEEecC---CceEE
Confidence 457889999998776542 23 78999977743 222232211110 11134899999998876653 34567
Q ss_pred EEEe
Q 007620 381 ILLN 384 (595)
Q Consensus 381 l~~~ 384 (595)
+|-+
T Consensus 261 IWdV 264 (603)
T KOG0318|consen 261 IWDV 264 (603)
T ss_pred EEEe
Confidence 7743
No 67
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=98.07 E-value=3.8e-05 Score=79.30 Aligned_cols=121 Identities=19% Similarity=0.157 Sum_probs=87.0
Q ss_pred ccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcE
Q 007620 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (595)
Q Consensus 436 ~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (595)
.+++.+++...+...|+.+|+.++.+.+++.+-... ...+...+..|.+..++.||.+|+.+++. .+.+.. +.|+
T Consensus 349 ~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p-~~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~pT 423 (648)
T COG1505 349 KDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQP-VQFDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---ENPT 423 (648)
T ss_pred CCCcEEEEEeecccCCCceEEEecCCceehhhhhcc-CCcCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CCce
Confidence 366788889999999999999999888888777653 33444556889999999999999999998 775542 4599
Q ss_pred EEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhh
Q 007620 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579 (595)
Q Consensus 516 vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~ 579 (595)
+||.|+|+ +|.-.|. |.. ..-+|..+|.+-++ .++| ||.|++...-
T Consensus 424 ll~aYGGF--------~vsltP~-fs~----~~~~WLerGg~~v~----ANIR-GGGEfGp~WH 469 (648)
T COG1505 424 LLYAYGGF--------NISLTPR-FSG----SRKLWLERGGVFVL----ANIR-GGGEFGPEWH 469 (648)
T ss_pred EEEecccc--------ccccCCc-cch----hhHHHHhcCCeEEE----Eecc-cCCccCHHHH
Confidence 99999763 2444443 221 12577777655555 3555 4667877653
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.03 E-value=0.0029 Score=58.61 Aligned_cols=226 Identities=13% Similarity=0.207 Sum_probs=114.1
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|.-||.+||-.+. ++...+|-++. . +.++..........+..+.|.|...-+++++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~--------dktv~v~n~e~--~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---- 85 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF--------DKTVSVWNLER--D--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---- 85 (313)
T ss_pred cceEEEEcccCceeeeccc--------CCceEEEEecc--h--hhhhhhcccCCCcchhhheeCCCCCcceEEecC----
Confidence 4778999999999988764 34455665544 3 223222221112245688999776655554221
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeee-cCCCCeeeeeEECCCCCeE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYV 189 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-lt~~~~~~~~~~SpDg~~l 189 (595)
+ ..+.++|. .++... +........+.|||+|+++
T Consensus 86 ------------------d--------------------------k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 86 ------------------D--------------------------KTIRIWDIRSGKCTARIETKGENINITWSPDGEYI 121 (313)
T ss_pred ------------------C--------------------------ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence 1 11233444 444332 2222222358999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (595)
++..... .|..+|...-++..-.+.+ ...-...|+-++. ++++. ...|.
T Consensus 122 ~~~~kdD-------------~it~id~r~~~~~~~~~~~-------------~e~ne~~w~~~nd--~Fflt-~GlG~-- 170 (313)
T KOG1407|consen 122 AVGNKDD-------------RITFIDARTYKIVNEEQFK-------------FEVNEISWNNSND--LFFLT-NGLGC-- 170 (313)
T ss_pred EEecCcc-------------cEEEEEecccceeehhccc-------------ceeeeeeecCCCC--EEEEe-cCCce--
Confidence 9885322 4555565433222211110 0112456664433 65552 11110
Q ss_pred cccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe--ecccc
Q 007620 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DRVFE 347 (595)
Q Consensus 270 ~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~--~~~~~ 347 (595)
-.|+.+.. ++ ....|.......-.+.|+|+|+.|+..+. +....|| |++.- .=.|.+. +..+.
T Consensus 171 ------v~ILsyps--Lk--pv~si~AH~snCicI~f~p~GryfA~GsA--DAlvSLW--D~~EL-iC~R~isRldwpVR 235 (313)
T KOG1407|consen 171 ------VEILSYPS--LK--PVQSIKAHPSNCICIEFDPDGRYFATGSA--DALVSLW--DVDEL-ICERCISRLDWPVR 235 (313)
T ss_pred ------EEEEeccc--cc--cccccccCCcceEEEEECCCCceEeeccc--cceeecc--ChhHh-hhheeeccccCceE
Confidence 12222221 11 12223334444567899999999887542 2333555 44331 1124442 44444
Q ss_pred cccCCCCCCCeeeCCCCCEEEEEee
Q 007620 348 NVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
- +++|-||+.|+-.++
T Consensus 236 T---------lSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 236 T---------LSFSHDGRMLASASE 251 (313)
T ss_pred E---------EEeccCcceeeccCc
Confidence 3 789999998876543
No 69
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.02 E-value=0.015 Score=59.47 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=43.6
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~ 83 (595)
.|.+.|.. +.+. ..+.. .+.......+||||+++ |+.++ ...|-++|+.+++.. ++ ....
T Consensus 17 ~v~viD~~----t~~~~~~i~~--~~~~h~~~~~s~Dgr~~-yv~~r---------dg~vsviD~~~~~~v~~i-~~G~- 78 (369)
T PF02239_consen 17 SVAVIDGA----TNKVVARIPT--GGAPHAGLKFSPDGRYL-YVANR---------DGTVSVIDLATGKVVATI-KVGG- 78 (369)
T ss_dssp EEEEEETT----T-SEEEEEE---STTEEEEEE-TT-SSEE-EEEET---------TSEEEEEETTSSSEEEEE-E-SS-
T ss_pred EEEEEECC----CCeEEEEEcC--CCCceeEEEecCCCCEE-EEEcC---------CCeEEEEECCcccEEEEE-ecCC-
Confidence 46677766 4433 34431 12123457899999985 54554 257999999988743 33 1111
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+..|+||++|+..
T Consensus 79 ----~~~~i~~s~DG~~~~v~ 95 (369)
T PF02239_consen 79 ----NPRGIAVSPDGKYVYVA 95 (369)
T ss_dssp ----EEEEEEE--TTTEEEEE
T ss_pred ----CcceEEEcCCCCEEEEE
Confidence 33478999999998775
No 70
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.00 E-value=0.00011 Score=72.05 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=111.6
Q ss_pred ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
..+|+++.. .++..+|.|+|++|+-.+- +..-.|| |+.++....+-... ..++.+++|.+||..
T Consensus 254 l~~l~gH~~--RVs~VafHPsG~~L~Tasf--------D~tWRlW--D~~tk~ElL~QEGH----s~~v~~iaf~~DGSL 317 (459)
T KOG0272|consen 254 LQDLEGHLA--RVSRVAFHPSGKFLGTASF--------DSTWRLW--DLETKSELLLQEGH----SKGVFSIAFQPDGSL 317 (459)
T ss_pred hhhhhcchh--hheeeeecCCCceeeeccc--------ccchhhc--ccccchhhHhhccc----ccccceeEecCCCce
Confidence 345565443 5899999999998877653 4456677 87777644332211 225779999999997
Q ss_pred EEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCC-CCee
Q 007620 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVY 177 (595)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~-~~~~ 177 (595)
++-...+. ..+| +|+ +|. +.-|.. -..+
T Consensus 318 ~~tGGlD~-----------------------------------------------~~Rv--WDlRtgr~im~L~gH~k~I 348 (459)
T KOG0272|consen 318 AATGGLDS-----------------------------------------------LGRV--WDLRTGRCIMFLAGHIKEI 348 (459)
T ss_pred eeccCccc-----------------------------------------------hhhe--eecccCcEEEEecccccce
Confidence 65421110 0111 222 331 111111 1234
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeE
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l 257 (595)
.+++|||+|-.|+-.+.+ ...-+||+..... +...|.. ..-+....++|+....|
T Consensus 349 ~~V~fsPNGy~lATgs~D-------------nt~kVWDLR~r~~--ly~ipAH----------~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 349 LSVAFSPNGYHLATGSSD-------------NTCKVWDLRMRSE--LYTIPAH----------SNLVSQVKYSPQEGYFL 403 (459)
T ss_pred eeEeECCCceEEeecCCC-------------CcEEEeeeccccc--ceecccc----------cchhhheEecccCCeEE
Confidence 578999999998866542 2566788875433 3322221 12244577888544323
Q ss_pred EEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEE
Q 007620 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (595)
Q Consensus 258 ~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~ 327 (595)
+-. ...+.+-+|.. .+....+.|...++.+.....|+|+..++...+. ...+||
T Consensus 404 ~Ta------------syD~t~kiWs~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D--RT~KLW 457 (459)
T KOG0272|consen 404 VTA------------SYDNTVKIWST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD--RTIKLW 457 (459)
T ss_pred EEc------------ccCcceeeecC--CCcccchhhcCCccceEEEEeccCCceEEEeccC--ceeeec
Confidence 222 12223333332 1223445566667778888999999887766532 223555
No 71
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.98 E-value=0.00092 Score=65.73 Aligned_cols=194 Identities=18% Similarity=0.171 Sum_probs=105.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCC--cEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS--TLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg--~~l~~~~~~~~ 109 (595)
.++...||+||+.||-.+= .+..+||-++ +....+...... ..++...|.|.. ..|+-.+.
T Consensus 177 Pis~~~fS~ds~~laT~sw--------sG~~kvW~~~--~~~~~~~l~gH~----~~v~~~~fhP~~~~~~lat~s~--- 239 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSW--------SGLVKVWSVP--QCNLLQTLRGHT----SRVGAAVFHPVDSDLNLATASA--- 239 (459)
T ss_pred cceeeEeecCCCeEEEeec--------CCceeEeecC--CcceeEEEeccc----cceeeEEEccCCCccceeeecc---
Confidence 3556889999999887553 4667888544 444444432211 157789999973 34443311
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCC-CCeeeeeEECCCCCe
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT-PAVYTAVEPSPDQKY 188 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~-~~~~~~~~~SpDg~~ 188 (595)
+| ...||.++-+..+..|+. ...+..++|.|+|++
T Consensus 240 -------------------Dg-------------------------tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 240 -------------------DG-------------------------TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred -------------------CC-------------------------ceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 11 122333322222333332 223557899999999
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCc
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (595)
|+-.+.+. .--+||+.++..-.+. .|+..++..++|.+||. |+.- .+-
T Consensus 276 L~TasfD~-------------tWRlWD~~tk~ElL~Q------------EGHs~~v~~iaf~~DGS--L~~t---GGl-- 323 (459)
T KOG0272|consen 276 LGTASFDS-------------TWRLWDLETKSELLLQ------------EGHSKGVFSIAFQPDGS--LAAT---GGL-- 323 (459)
T ss_pred eeeccccc-------------chhhcccccchhhHhh------------cccccccceeEecCCCc--eeec---cCc--
Confidence 98776432 2336788776543322 12334566789999998 3221 111
Q ss_pred ccccCCcceEEeccCCCCCCCCcee-ccccCccccceeecCCCcEEEEEEeecccceEEEEE
Q 007620 269 NVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 269 ~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~ 329 (595)
...-.+||+ -+| .-.. |......+..+.|||+|-.++..+. +...++|-+
T Consensus 324 ------D~~~RvWDl--Rtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~--Dnt~kVWDL 374 (459)
T KOG0272|consen 324 ------DSLGRVWDL--RTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSS--DNTCKVWDL 374 (459)
T ss_pred ------cchhheeec--ccC-cEEEEecccccceeeEeECCCceEEeecCC--CCcEEEeee
Confidence 112233454 122 2221 2222334667999999988877542 233456643
No 72
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.89 E-value=0.00038 Score=73.52 Aligned_cols=203 Identities=18% Similarity=0.204 Sum_probs=120.9
Q ss_pred EecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccc
Q 007620 10 HRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVF 89 (595)
Q Consensus 10 ~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~ 89 (595)
.||.++.+.+..+.+.++.+ .+...+||||-+.|.=.+. +....||-++. .....+.. .. +.++
T Consensus 433 ~~~~D~~~~~~~~~L~GH~G--PVyg~sFsPd~rfLlScSE--------D~svRLWsl~t--~s~~V~y~-GH---~~PV 496 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSG--PVYGCSFSPDRRFLLSCSE--------DSSVRLWSLDT--WSCLVIYK-GH---LAPV 496 (707)
T ss_pred hhhccccCCceeEEeecCCC--ceeeeeecccccceeeccC--------Ccceeeeeccc--ceeEEEec-CC---Ccce
Confidence 46666677888888886554 4889999999997765542 46778886654 33333322 11 1234
Q ss_pred cceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCee
Q 007620 90 GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK 169 (595)
Q Consensus 90 ~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 169 (595)
-..+|+|-|- +|..-. +| .+.+||..|-..-.|
T Consensus 497 wdV~F~P~Gy--YFatas--------------------------------------~D-------~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 497 WDVQFAPRGY--YFATAS--------------------------------------HD-------QTARLWSTDHNKPLR 529 (707)
T ss_pred eeEEecCCce--EEEecC--------------------------------------CC-------ceeeeeecccCCchh
Confidence 4567778774 443110 11 134555554322222
Q ss_pred ecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEEeccCCCCccCCccccccccCCCCc
Q 007620 170 DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSI 247 (595)
Q Consensus 170 ~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (595)
.+... ..+.-+.|.|+..+++-.+.+ ..+-+||+-+| .+|..... ..-...+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~GH-------------~~~V~al 583 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFTGH-------------KGPVTAL 583 (707)
T ss_pred hhcccccccceEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEecCC-------------CCceEEE
Confidence 22211 123357899999998766432 36788997655 45554332 1223468
Q ss_pred eeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEE
Q 007620 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 248 ~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~ 317 (595)
.+||+|+. |+.. .....+.+||+ .+|... ++....+.+..+.||.||..|+...
T Consensus 584 ~~Sp~Gr~-LaSg------------~ed~~I~iWDl---~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 584 AFSPCGRY-LASG------------DEDGLIKIWDL---ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred EEcCCCce-Eeec------------ccCCcEEEEEc---CCCcchhhhhcccCceeEEEEecCCCEEEecC
Confidence 89999983 3221 22346788897 433433 4445566778899999999888764
No 73
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.024 Score=58.03 Aligned_cols=107 Identities=20% Similarity=0.279 Sum_probs=64.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
...-.+|||-|.+|+-.-.+ +-.|| ||+. .++....+ .++.-..+||..++|+-.++....
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~---------GI~lW-----GG~~f~r~~RF~H----p~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQ---------GIALW-----GGESFDRIQRFYH----PGVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeeeEEecCCceEEEEEecc---------ceeee-----cCccHHHHHhccC----CCceeeecCCccceEEEecCCccc
Confidence 35568999999998776543 46777 5542 23322222 145677899999988765432111
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeee-c--CCCCe--eeeeEECC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-F--GTPAV--YTAVEPSP 184 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-l--t~~~~--~~~~~~Sp 184 (595)
. ..+ .+ ...+|.+.|+ +|..++ . ....+ -.-+.||-
T Consensus 274 ~----------------~~~---------------d~-------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~ 315 (698)
T KOG2314|consen 274 V----------------EED---------------DN-------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH 315 (698)
T ss_pred c----------------Ccc---------------cC-------CCceEEEEEccccchhcceeccCCCccccceEEecc
Confidence 0 000 01 2368899999 885432 2 12222 23689999
Q ss_pred CCCeEEEEEc
Q 007620 185 DQKYVLITSM 194 (595)
Q Consensus 185 Dg~~l~~~~~ 194 (595)
|+|+++....
T Consensus 316 DdKy~Arm~~ 325 (698)
T KOG2314|consen 316 DDKYFARMTG 325 (698)
T ss_pred CCceeEEecc
Confidence 9999987754
No 74
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.00019 Score=69.10 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=51.2
Q ss_pred eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEE
Q 007620 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (595)
Q Consensus 23 ~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~ 102 (595)
+|...++...+...+|.+||..++-.+ -+...|.+.|+++|...+|-.... ++++.+.|||||..|+
T Consensus 188 qvl~~pgh~pVtsmqwn~dgt~l~tAS---------~gsssi~iWdpdtg~~~pL~~~gl----gg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 188 QVLQDPGHNPVTSMQWNEDGTILVTAS---------FGSSSIMIWDPDTGQKIPLIPKGL----GGFSLLKWSPDGDVLF 254 (445)
T ss_pred hheeCCCCceeeEEEEcCCCCEEeecc---------cCcceEEEEcCCCCCcccccccCC----CceeeEEEcCCCCEEE
Confidence 444456666788899999999876654 245778888999998777742221 2577899999999877
Q ss_pred EEe
Q 007620 103 FTI 105 (595)
Q Consensus 103 ~~~ 105 (595)
-..
T Consensus 255 aAt 257 (445)
T KOG2139|consen 255 AAT 257 (445)
T ss_pred Eec
Confidence 753
No 75
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.87 E-value=0.0008 Score=65.30 Aligned_cols=57 Identities=26% Similarity=0.425 Sum_probs=37.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce--EecccCCCccccccccceEEec-----CCcEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVN-----NSTLLIF 103 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Wsp-----dg~~l~~ 103 (595)
.+....|||||++||--+. ...|-++|+++|+. +.|..... .+..++|-| ..++|+-
T Consensus 159 WVlcvawsPDgk~iASG~~----------dg~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSK----------DGSIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred EEEEEEECCCcchhhcccc----------CCeEEEecCCCCCcccccccCccc-----ceeEEeecccccCCCccceec
Confidence 5778899999999987543 35666679888763 45544433 466777754 4554444
No 76
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.83 E-value=0.015 Score=60.94 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=60.7
Q ss_pred cCCCEEEEEEecccccccCCCceEEEEEECC--CCce-EecccCCCccccc---cccceEEecCCcEEEEEecCCCCCCC
Q 007620 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEA-KPLFESPDICLNA---VFGSFVWVNNSTLLIFTIPSSRRDPP 113 (595)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~--~g~~-~~lt~~~~~~~~~---~~~~~~Wspdg~~l~~~~~~~~~~~~ 113 (595)
..|.+..|....+. ....-+|+.... .|.. +.|.+........ ..+.+.+||||++|+|....
T Consensus 76 ~~g~~~y~~~~~~~-----~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~------ 144 (414)
T PF02897_consen 76 RRGGYYYYSRNQGG-----KNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSD------ 144 (414)
T ss_dssp EETTEEEEEEE-SS------SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEE------
T ss_pred EECCeEEEEEEcCC-----CceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecC------
Confidence 35778877765431 233457777766 3443 4554432211111 12367889999999997421
Q ss_pred CccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeee-cCCCCeeeeeEECCCCCeEEE
Q 007620 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYVLI 191 (595)
Q Consensus 114 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-lt~~~~~~~~~~SpDg~~l~~ 191 (595)
.|. ....|+++|+ +|+... .........+.|++||+.++|
T Consensus 145 ---------------~G~-----------------------e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 145 ---------------GGS-----------------------EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFY 186 (414)
T ss_dssp ---------------TTS-----------------------SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEE
T ss_pred ---------------CCC-----------------------ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEE
Confidence 121 1357889999 664321 111112224899999999999
Q ss_pred EEccc
Q 007620 192 TSMHR 196 (595)
Q Consensus 192 ~~~~~ 196 (595)
+....
T Consensus 187 ~~~~~ 191 (414)
T PF02897_consen 187 TRFDE 191 (414)
T ss_dssp EECST
T ss_pred EEeCc
Confidence 98654
No 77
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.016 Score=59.39 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=47.1
Q ss_pred CcccceEEccCCCEEEEEEecc---cccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 31 AKINFVSWSPDGKRIAFSVRVD---EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~---~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+.+....|||.-++|+--+... ++++ ....+|.++|+.+|...+-+...... .....-+.||.|++.++.+
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d--~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD--NEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCccc--CCCceEEEEEccccchhcceeccCCC-ccccceEEeccCCceeEEe
Confidence 3688899999999886655431 1111 34578999999999876665442110 0012367999999988886
No 78
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.80 E-value=4.8e-05 Score=49.88 Aligned_cols=38 Identities=26% Similarity=0.573 Sum_probs=26.7
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEE
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v 66 (595)
+|+|..+. ....|.|||||++|+|++.+.. .+..+||+
T Consensus 2 ~~~t~~~~--~~~~p~~SpDGk~i~f~s~~~~-----~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPG--DDGSPAWSPDGKYIYFTSNRND-----RGSFDIYV 39 (39)
T ss_dssp EEES-SSS--SEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cCcccCCc--cccCEEEecCCCEEEEEecCCC-----CCCcCEEC
Confidence 46774333 5889999999999999998731 25678885
No 79
>PTZ00421 coronin; Provisional
Probab=97.76 E-value=0.031 Score=59.49 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=75.7
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.+..++|+|++..++++... ...|.+||+.++.. ..+.... .....+.|+|||.
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~------------DgtVrIWDl~tg~~~~~l~~h~-------------~~V~sla~spdG~ 181 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGA------------DMVVNVWDVERGKAVEVIKCHS-------------DQITSLEWNLDGS 181 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeC------------CCEEEEEECCCCeEEEEEcCCC-------------CceEEEEEECCCC
Confidence 45678999997655555432 23688999886643 3332111 1134688999987
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
. |+.. .....+.+||. .++.....+.... .......|++++..++...........|.++|+..
T Consensus 182 l-Latg------------s~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 182 L-LCTT------------SKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred E-EEEe------------cCCCEEEEEEC--CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 3 3221 12236777785 2321222232222 22345789988766544321111112466667765
Q ss_pred CCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
. ..+..+.+.+.. .+...+.|+++++.++...
T Consensus 247 ~-~~p~~~~~~d~~-----~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 247 M-ASPYSTVDLDQS-----SALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred C-CCceeEeccCCC-----CceEEEEEcCCCCEEEEEE
Confidence 3 122222221111 1111256788888776654
No 80
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.76 E-value=0.016 Score=55.97 Aligned_cols=196 Identities=16% Similarity=0.150 Sum_probs=102.5
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEe-cCCcEEEEEecCCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNSTLLIFTIPSSRRDPP 113 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws-pdg~~l~~~~~~~~~~~~ 113 (595)
.|.|.|....|+|+-. ...+|+.+++++++...+.. .. ...+... ++|+.++.. .
T Consensus 4 gp~~d~~~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~~-~~------~~G~~~~~~~g~l~v~~-~------- 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDI---------PGGRIYRVDPDTGEVEVIDL-PG------PNGMAFDRPDGRLYVAD-S------- 59 (246)
T ss_dssp EEEEETTTTEEEEEET---------TTTEEEEEETTTTEEEEEES-SS------EEEEEEECTTSEEEEEE-T-------
T ss_pred ceEEECCCCEEEEEEc---------CCCEEEEEECCCCeEEEEec-CC------CceEEEEccCCEEEEEE-c-------
Confidence 5999997778888743 35789999999887655432 21 2345555 665543332 1
Q ss_pred CccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCC----C-C--eeeeeEECCC
Q 007620 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT----P-A--VYTAVEPSPD 185 (595)
Q Consensus 114 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~----~-~--~~~~~~~SpD 185 (595)
..+.++|+ +|+.+.+.. . . ...++++.||
T Consensus 60 -------------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~ 96 (246)
T PF08450_consen 60 -------------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD 96 (246)
T ss_dssp -------------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT
T ss_pred -------------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC
Confidence 11222344 333333211 1 1 3358899999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|+ |+|+.......... ....+++++.+ ++.+.+...- .....+.|+||++. ||+..
T Consensus 97 G~-ly~t~~~~~~~~~~----~~g~v~~~~~~-~~~~~~~~~~-------------~~pNGi~~s~dg~~-lyv~d---- 152 (246)
T PF08450_consen 97 GN-LYVTDSGGGGASGI----DPGSVYRIDPD-GKVTVVADGL-------------GFPNGIAFSPDGKT-LYVAD---- 152 (246)
T ss_dssp S--EEEEEECCBCTTCG----GSEEEEEEETT-SEEEEEEEEE-------------SSEEEEEEETTSSE-EEEEE----
T ss_pred CC-EEEEecCCCccccc----cccceEEECCC-CeEEEEecCc-------------ccccceEECCcchh-eeecc----
Confidence 98 77775432210000 01579999988 5544443210 01235889999983 65542
Q ss_pred CCcccccCCcceEEeccCCCCCCCCc---eeccccCc---cccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDL---RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~---~~l~~~~~---~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
.....++.++.+ ..+++. +.+..... ....+.+..+|..++... ...+|++++.++
T Consensus 153 -------s~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~~~~p~G 214 (246)
T PF08450_consen 153 -------SFNGRIWRFDLD-ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIVVFDPDG 214 (246)
T ss_dssp -------TTTTEEEEEEEE-TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEEEEETTS
T ss_pred -------cccceeEEEecc-ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEEEECCCc
Confidence 223456655540 122211 12222221 244566777787655432 233899999886
No 81
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.0041 Score=59.16 Aligned_cols=55 Identities=7% Similarity=-0.008 Sum_probs=32.4
Q ss_pred ccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEE---eecccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL---FDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 301 ~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
......||.|..|+.... ..|..+...+++ ...++ ....... ++|+++|++++..
T Consensus 334 p~RL~lsP~g~~lA~s~g-----s~l~~~~se~g~-~~~~~e~~h~~~Is~---------is~~~~g~~~atc 391 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSFG-----SDLKVFASEDGK-DYPELEDIHSTTISS---------ISYSSDGKYIATC 391 (420)
T ss_pred ceEEEeCCCCcEEEeecC-----CceEEEEcccCc-cchhHHHhhcCceee---------EEecCCCcEEeee
Confidence 346778999987766431 256666665532 11112 1222333 8999999987654
No 82
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.017 Score=59.23 Aligned_cols=235 Identities=15% Similarity=0.184 Sum_probs=130.7
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCC--EEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK--RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~--~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
..+++.++.. ..+....|. ...++...+||-++ .||+-.-. ..| .....+||-+... +. .+......
T Consensus 146 nev~f~~~~~--f~~~~~kl~----~~~i~~f~lSpgp~~~~vAvyvPe--~kG-aPa~vri~~~~~~-~~-~~~~a~ks 214 (566)
T KOG2315|consen 146 NEVQFYDLGS--FKTIQHKLS----VSGITMLSLSPGPEPPFVAVYVPE--KKG-APASVRIYKYPEE-GQ-HQPVANKS 214 (566)
T ss_pred ceEEEEecCC--ccceeeeee----ccceeeEEecCCCCCceEEEEccC--CCC-CCcEEEEeccccc-cc-cchhhhcc
Confidence 4566776652 233444443 22578889999866 44443321 111 0233556665522 22 22211111
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
.. -+.-..+.|.+-|..|++++..+ .|+..-.||....||.+
T Consensus 215 FF-kadkvqm~WN~~gt~LLvLastd-------------------------------------VDktn~SYYGEq~Lyll 256 (566)
T KOG2315|consen 215 FF-KADKVQMKWNKLGTALLVLASTD-------------------------------------VDKTNASYYGEQTLYLL 256 (566)
T ss_pred cc-ccceeEEEeccCCceEEEEEEEe-------------------------------------ecCCCccccccceEEEE
Confidence 10 01123789999999877753210 12222345667889999
Q ss_pred cCCCC--eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccc
Q 007620 163 SLDGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 163 d~~g~--~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~ 240 (595)
+.+|+ ..+|...+-+.++.|||+|+..+++-.. .+..+-++|+.+..+..+-+.|
T Consensus 257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf-----------MPAkvtifnlr~~~v~df~egp------------ 313 (566)
T KOG2315|consen 257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF-----------MPAKVTIFNLRGKPVFDFPEGP------------ 313 (566)
T ss_pred EecCceEEEecCCCCCceEEEECCCCCEEEEEEec-----------ccceEEEEcCCCCEeEeCCCCC------------
Confidence 99874 4467666667799999999988777432 2568889999988776665443
Q ss_pred ccCCC-CceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEe
Q 007620 241 REGMR-SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETW 318 (595)
Q Consensus 241 ~~~~~-~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~ 318 (595)
+ .+.|+|-|.. |++. .-+ +....+-+||+ . ..+.+.... ..-+-..|+|||..|+....
T Consensus 314 ----RN~~~fnp~g~i-i~lA-GFG--------NL~G~mEvwDv---~--n~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 314 ----RNTAFFNPHGNI-ILLA-GFG--------NLPGDMEVWDV---P--NRKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ----ccceEECCCCCE-EEEe-ecC--------CCCCceEEEec---c--chhhccccccCCceEEEEcCCCcEEEEEec
Confidence 3 4778999873 3333 211 11233445565 2 223333322 22345889999998765431
Q ss_pred ----ecccceEEEEEe
Q 007620 319 ----YKTSQTRTWLVC 330 (595)
Q Consensus 319 ----~~~~~~~L~~~d 330 (595)
..+....||.++
T Consensus 375 aPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYT 390 (566)
T ss_pred cccEEecCCeEEEEec
Confidence 112334677664
No 83
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.69 E-value=0.0067 Score=55.85 Aligned_cols=218 Identities=12% Similarity=0.145 Sum_probs=121.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCC-CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
+.+-|+|+. +++..++..+... ..+....|--||++++ +... ++...|| |+..-...++.....
T Consensus 61 qhvRlyD~~----S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-Tgse-------Dgt~kIW--dlR~~~~qR~~~~~s- 125 (311)
T KOG0315|consen 61 QHVRLYDLN----SNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSE-------DGTVKIW--DLRSLSCQRNYQHNS- 125 (311)
T ss_pred CeeEEEEcc----CCCCCceeEEeccCCceEEEEEeecCeEEE-ecCC-------CceEEEE--eccCcccchhccCCC-
Confidence 467788887 6666555544443 3677888999998864 4332 5667777 554444445543332
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
.+..+.-.|+...|+.. ....+|++.|
T Consensus 126 ----pVn~vvlhpnQteLis~-------------------------------------------------dqsg~irvWD 152 (311)
T KOG0315|consen 126 ----PVNTVVLHPNQTELISG-------------------------------------------------DQSGNIRVWD 152 (311)
T ss_pred ----CcceEEecCCcceEEee-------------------------------------------------cCCCcEEEEE
Confidence 45555666655444432 0235677788
Q ss_pred C-CC-CeeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eE---EEeccCCCCccCCc
Q 007620 164 L-DG-TAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LV---RELCDLPPAEDIPV 235 (595)
Q Consensus 164 ~-~g-~~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~---~~l~~~~~~~~~~~ 235 (595)
+ +. -..+|.++. ....+...|||+.|+...+ + ...|+|++-++ .. ..+..++..+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn-k------------G~cyvW~l~~~~~~s~l~P~~k~~ah~---- 215 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN-K------------GNCYVWRLLNHQTASELEPVHKFQAHN---- 215 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEecC-C------------ccEEEEEccCCCccccceEhhheeccc----
Confidence 8 33 344554432 5568999999999887753 2 36889987642 21 2222221110
Q ss_pred cccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEE
Q 007620 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~ 315 (595)
.....-.+|||++. |+-. .....+++++.+.+- .....|.........-.||.||..|+.
T Consensus 216 ------~~il~C~lSPd~k~-lat~------------ssdktv~iwn~~~~~-kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 216 ------GHILRCLLSPDVKY-LATC------------SSDKTVKIWNTDDFF-KLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred ------ceEEEEEECCCCcE-EEee------------cCCceEEEEecCCce-eeEEEeecCCceEEeeeeccCccEEEe
Confidence 01123567999983 3322 122345555541110 112234444445667889999998887
Q ss_pred EEeecccceEEEEE
Q 007620 316 ETWYKTSQTRTWLV 329 (595)
Q Consensus 316 ~~~~~~~~~~L~~~ 329 (595)
.+. +...+||-+
T Consensus 276 ass--d~~~rlW~~ 287 (311)
T KOG0315|consen 276 ASS--DHTARLWDL 287 (311)
T ss_pred cCC--CCceeeccc
Confidence 642 244567644
No 84
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.66 E-value=0.053 Score=50.96 Aligned_cols=200 Identities=15% Similarity=0.135 Sum_probs=113.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC---CCCc-eEecccCCCccccccccceEEecCCcEEEEEecC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~ 107 (595)
.+...+..+.+..+.+.+.++ ...-+|-+.- +.|. .++++.... .++...-++||...+-...
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD-------k~ii~W~L~~dd~~~G~~~r~~~GHsH-----~v~dv~~s~dg~~alS~sw- 83 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD-------KTIIVWKLTSDDIKYGVPVRRLTGHSH-----FVSDVVLSSDGNFALSASW- 83 (315)
T ss_pred eEEEEEeecCCCceEEEcccc-------eEEEEEEeccCccccCceeeeeeccce-----EecceEEccCCceEEeccc-
Confidence 355667777777777777662 2333333322 2344 345544333 4678888999985333211
Q ss_pred CCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeee-c-CCCCeeeeeEECC
Q 007620 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-F-GTPAVYTAVEPSP 184 (595)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-l-t~~~~~~~~~~Sp 184 (595)
| ..+.+.|+ .|+.++ + .....+..+++||
T Consensus 84 ---------------------------------------D---------~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~ 115 (315)
T KOG0279|consen 84 ---------------------------------------D---------GTLRLWDLATGESTRRFVGHTKDVLSVAFST 115 (315)
T ss_pred ---------------------------------------c---------ceEEEEEecCCcEEEEEEecCCceEEEEecC
Confidence 1 23455677 555443 3 2334566899999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeec
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (595)
|.++|+-.+.+ ..|-+||+.|+....+.+.... .=+.-+.|+|.... .+++.+
T Consensus 116 dn~qivSGSrD-------------kTiklwnt~g~ck~t~~~~~~~-----------~WVscvrfsP~~~~-p~Ivs~-- 168 (315)
T KOG0279|consen 116 DNRQIVSGSRD-------------KTIKLWNTLGVCKYTIHEDSHR-----------EWVSCVRFSPNESN-PIIVSA-- 168 (315)
T ss_pred CCceeecCCCc-------------ceeeeeeecccEEEEEecCCCc-----------CcEEEEEEcCCCCC-cEEEEc--
Confidence 99998755432 3688899988877776543100 00124678887532 333322
Q ss_pred CCCcccccCCcceEEeccCCCCCCCCcee-ccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.....+.+||+ .+-+.+. +....+......+||||...++. .+++ .+++.|++.+
T Consensus 169 --------s~DktvKvWnl---~~~~l~~~~~gh~~~v~t~~vSpDGslcasG--gkdg--~~~LwdL~~~ 224 (315)
T KOG0279|consen 169 --------SWDKTVKVWNL---RNCQLRTTFIGHSGYVNTVTVSPDGSLCASG--GKDG--EAMLWDLNEG 224 (315)
T ss_pred --------cCCceEEEEcc---CCcchhhccccccccEEEEEECCCCCEEecC--CCCc--eEEEEEccCC
Confidence 12235666776 3222222 33445556788999999977663 3344 5666777763
No 85
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.60 E-value=0.0032 Score=69.01 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=52.6
Q ss_pred eeEEEecCCCCCCCCceee-ecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc--eEecccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEV-HGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l-t~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~lt~~~~ 82 (595)
+|.|.|-. ++..+.| + .....+..|.|||||++|||+..... -.+...||+.++.+.. +..|- -+
T Consensus 330 ~L~~~D~d----G~n~~~ve~--~~~~~i~sP~~SPDG~~vAY~ts~e~----~~g~s~vYv~~L~t~~~~~vkl~--ve 397 (912)
T TIGR02171 330 NLAYIDYT----KGASRAVEI--EDTISVYHPDISPDGKKVAFCTGIEG----LPGKSSVYVRNLNASGSGLVKLP--VE 397 (912)
T ss_pred eEEEEecC----CCCceEEEe--cCCCceecCcCCCCCCEEEEEEeecC----CCCCceEEEEehhccCCCceEee--cc
Confidence 78888886 6677777 4 33446889999999999999444310 0147889999998643 33331 11
Q ss_pred ccccccccceEEe--cCCc-EEEEE
Q 007620 83 ICLNAVFGSFVWV--NNST-LLIFT 104 (595)
Q Consensus 83 ~~~~~~~~~~~Ws--pdg~-~l~~~ 104 (595)
...=++|- .+|. .|+|+
T Consensus 398 -----~aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 398 -----NAAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred -----cccccceEecCCCCeEEEEE
Confidence 12345665 6665 55665
No 86
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.57 E-value=0.00013 Score=67.98 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=43.7
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
+.=.++|++.+|.+|.|||++|..- +.++|+||+.|+ | +|-.+ .++.+-.||+.||+||.
T Consensus 55 e~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhG--Y----------~g~~g----~~~~~l~wa~~Gyavf~ 114 (321)
T COG3458 55 EVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHG--Y----------GGRGG----EWHDMLHWAVAGYAVFV 114 (321)
T ss_pred EEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEee--c----------cCCCC----CccccccccccceeEEE
Confidence 5666899999999999999999863 246799998763 1 11001 12334588999999997
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.55 E-value=0.029 Score=52.19 Aligned_cols=59 Identities=12% Similarity=0.271 Sum_probs=41.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.+..|+|-..-+.+++.. ...+-++|...++..+.+.... +--...|+|+|+.+++.
T Consensus 66 svdql~w~~~~~d~~atas~---------dk~ir~wd~r~~k~~~~i~~~~-----eni~i~wsp~g~~~~~~ 124 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASG---------DKTIRIWDIRSGKCTARIETKG-----ENINITWSPDGEYIAVG 124 (313)
T ss_pred chhhheeCCCCCcceEEecC---------CceEEEEEeccCcEEEEeeccC-----cceEEEEcCCCCEEEEe
Confidence 56788999976666666542 3456666888888766655443 23468999999999886
No 88
>PTZ00420 coronin; Provisional
Probab=97.52 E-value=0.11 Score=56.02 Aligned_cols=33 Identities=3% Similarity=-0.011 Sum_probs=23.4
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 220 (595)
..+..++|+|||+.|+.+... ..+.+||+.+++
T Consensus 168 ~~V~SlswspdG~lLat~s~D-------------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVG-------------KHMHIIDPRKQE 200 (568)
T ss_pred CcEEEEEECCCCCEEEEEecC-------------CEEEEEECCCCc
Confidence 345689999999988766422 368888887553
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.47 E-value=0.0038 Score=68.57 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=57.0
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEEeccCCCCccCCccccccccCCCCceeecCC
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (595)
..+.++.||||+.+++-.+.+ ..+.+||..+- ..+.+.... .-+....|-|-|
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~D-------------nsViiwn~~tF~~~~vl~~H~-------------s~VKGvs~DP~G 183 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLD-------------NSVIIWNAKTFELLKVLRGHQ-------------SLVKGVSWDPIG 183 (942)
T ss_pred CccceeccCCCccEEEEeccc-------------ceEEEEccccceeeeeeeccc-------------ccccceEECCcc
Confidence 345689999999998877653 36889997654 333332221 113468898988
Q ss_pred CeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc------CccccceeecCCCcEEEEE
Q 007620 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL------DLRFRSVSWCDDSLALVNE 316 (595)
Q Consensus 254 ~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~------~~~~~~~~wspDg~~l~~~ 316 (595)
+ |+..+. . ...+.+|+. .+=+-.+.++.. ...+..+.|||||..|+..
T Consensus 184 k----y~ASqs-d--------Drtikvwrt--~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 184 K----YFASQS-D--------DRTLKVWRT--SDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred C----eeeeec-C--------CceEEEEEc--ccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 8 332221 1 123334442 111122333321 1235689999999987643
No 90
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.46 E-value=0.071 Score=51.91 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=119.9
Q ss_pred ccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 33 ~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
...+..+| ++..+||.+ | ....++++|..+|+..+....+.+. .-++--.||+||++|+-+-.+ .
T Consensus 7 gH~~a~~p~~~~avafaR-R--------PG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd-~-- 72 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFAR-R--------PGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND-Y-- 72 (305)
T ss_pred ccceeeCCCCCeEEEEEe-C--------CCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc-c--
Confidence 67889999 555555554 3 3578999999999866544333211 012356899999988775211 0
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeec---CCCC-eeeeeEECCCCC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF---GTPA-VYTAVEPSPDQK 187 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~l---t~~~-~~~~~~~SpDg~ 187 (595)
+. ....|-++|.....+++ ...+ --..+.+.|||+
T Consensus 73 ----------------~~-------------------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~ 111 (305)
T PF07433_consen 73 ----------------ET-------------------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE 111 (305)
T ss_pred ----------------CC-------------------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC
Confidence 00 13456666665333333 2222 224788999999
Q ss_pred eEEEEEccc---Ccc--ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEe
Q 007620 188 YVLITSMHR---PYS--YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 188 ~l~~~~~~~---~~~--~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (595)
.|++..-.. |.. ..++.......|..+|..+|+...-..+|-.. .+...|-+.+.+||. +++. .
T Consensus 112 tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~--------~~lSiRHLa~~~~G~--V~~a-~ 180 (305)
T PF07433_consen 112 TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL--------HQLSIRHLAVDGDGT--VAFA-M 180 (305)
T ss_pred EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc--------cccceeeEEecCCCc--EEEE-E
Confidence 998874321 211 12222233446777887766543322222100 012245688888876 4332 3
Q ss_pred ecCCCcccccCCcceEEeccCCCCCCCCceecc-------ccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~-------~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
+..++... ..-.+.+++ .++..+.+. ...+...+++++++|..++..+- .-..+.++|.+++
T Consensus 181 Q~qg~~~~---~~PLva~~~----~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP---rGg~~~~~d~~tg 249 (305)
T PF07433_consen 181 QYQGDPGD---APPLVALHR----RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP---RGGRVAVWDAATG 249 (305)
T ss_pred ecCCCCCc---cCCeEEEEc----CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC---CCCEEEEEECCCC
Confidence 43333221 111233333 222222222 22345678899999887655532 1225666787773
No 91
>PTZ00421 coronin; Provisional
Probab=97.44 E-value=0.1 Score=55.62 Aligned_cols=136 Identities=12% Similarity=0.022 Sum_probs=67.3
Q ss_pred EEEEcC-CCCe-eecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCC
Q 007620 159 LVLGSL-DGTA-KDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIP 234 (595)
Q Consensus 159 l~~~d~-~g~~-~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~ 234 (595)
|.++|+ +++. ..+. ....+..++|+|||+.|+....+ ..|.+||+.+++ ...+.....
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D-------------g~IrIwD~rsg~~v~tl~~H~~----- 211 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD-------------KKLNIIDPRDGTIVSSVEAHAS----- 211 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC-------------CEEEEEECCCCcEEEEEecCCC-----
Confidence 444555 3432 2332 23346689999999988766532 368899987554 333322110
Q ss_pred ccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc--cCccccceeecCCCcE
Q 007620 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLA 312 (595)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~--~~~~~~~~~wspDg~~ 312 (595)
.......|.+++.. ++...+.. .....+.+||+ -....+..+.. .......+.|++|+..
T Consensus 212 -------~~~~~~~w~~~~~~-ivt~G~s~--------s~Dr~VklWDl--r~~~~p~~~~~~d~~~~~~~~~~d~d~~~ 273 (493)
T PTZ00421 212 -------AKSQRCLWAKRKDL-IITLGCSK--------SQQRQIMLWDT--RKMASPYSTVDLDQSSALFIPFFDEDTNL 273 (493)
T ss_pred -------CcceEEEEcCCCCe-EEEEecCC--------CCCCeEEEEeC--CCCCCceeEeccCCCCceEEEEEcCCCCE
Confidence 00113567777653 32221100 11235667775 11112222221 1122345678999887
Q ss_pred EEEEEeecccceEEEEEeCCC
Q 007620 313 LVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~ 333 (595)
++.... .++ .|.++|+..
T Consensus 274 L~lggk-gDg--~Iriwdl~~ 291 (493)
T PTZ00421 274 LYIGSK-GEG--NIRCFELMN 291 (493)
T ss_pred EEEEEe-CCC--eEEEEEeeC
Confidence 655421 123 466667665
No 92
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.38 E-value=0.28 Score=52.45 Aligned_cols=193 Identities=10% Similarity=0.134 Sum_probs=99.2
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
...+++||||+.|+....+ .++-+||...+-. -..++.. .++..+.|+..|+.
T Consensus 353 i~~l~YSpDgq~iaTG~eD-------------gKVKvWn~~SgfC~vTFteHt-------------s~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAED-------------GKVKVWNTQSGFCFVTFTEHT-------------SGVTAVQFTARGNV 406 (893)
T ss_pred eeeEEECCCCcEEEeccCC-------------CcEEEEeccCceEEEEeccCC-------------CceEEEEEEecCCE
Confidence 4578999999998866532 3788899876643 2233221 22345777777763
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc-cCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.+-...|+ .+..||+ .....-+.++. .+-++..++.-|-|..++... .....|+++++.++
T Consensus 407 --llssSLDG-----------tVRAwDl--kRYrNfRTft~P~p~QfscvavD~sGelV~AG~---~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 407 --LLSSSLDG-----------TVRAWDL--KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA---QDSFEIFVWSVQTG 468 (893)
T ss_pred --EEEeecCC-----------eEEeeee--cccceeeeecCCCceeeeEEEEcCCCCEEEeec---cceEEEEEEEeecC
Confidence 22222332 2333343 01101111221 122344455555576544432 23458999999885
Q ss_pred CCCcEEEe---ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeee
Q 007620 335 DVAPRVLF---DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (595)
Q Consensus 335 ~~~~~~l~---~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (595)
+...++ +..+.. ++++++|..|+-.+-+ ...++|-+ ++ ..++.+.|-
T Consensus 469 --qllDiLsGHEgPVs~---------l~f~~~~~~LaS~SWD---kTVRiW~i---------------f~-s~~~vEtl~ 518 (893)
T KOG0291|consen 469 --QLLDILSGHEGPVSG---------LSFSPDGSLLASGSWD---KTVRIWDI---------------FS-SSGTVETLE 518 (893)
T ss_pred --eeeehhcCCCCccee---------eEEccccCeEEecccc---ceEEEEEe---------------ec-cCceeeeEe
Confidence 322222 222322 6789999977655433 24445411 12 133444331
Q ss_pred ecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCC
Q 007620 412 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (595)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~ 460 (595)
.. ..++ ..+|.|||+.+++...+ ++|-.+|..
T Consensus 519 i~---------sdvl----~vsfrPdG~elaVaTld----gqItf~d~~ 550 (893)
T KOG0291|consen 519 IR---------SDVL----AVSFRPDGKELAVATLD----GQITFFDIK 550 (893)
T ss_pred ec---------ccee----EEEEcCCCCeEEEEEec----ceEEEEEhh
Confidence 11 1111 25789999988876543 456666644
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.08 Score=50.64 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=62.8
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
...+.||||||+|++++.. ..++++|.- |.....+...+..... .....++||++.
T Consensus 190 w~~l~FS~dGK~iLlsT~~-------------s~~~~lDAf~G~~~~tfs~~~~~~~~----------~~~a~ftPds~F 246 (311)
T KOG1446|consen 190 WTDLEFSPDGKSILLSTNA-------------SFIYLLDAFDGTVKSTFSGYPNAGNL----------PLSATFTPDSKF 246 (311)
T ss_pred eeeeEEcCCCCEEEEEeCC-------------CcEEEEEccCCcEeeeEeeccCCCCc----------ceeEEECCCCcE
Confidence 4589999999999999753 357888855 4433444444322211 124678899984
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc--CccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
| +.. .....+.+|++ .+ |........ .+....+.|.|.-..++... .+..+|..+.
T Consensus 247 -v--l~g----------s~dg~i~vw~~--~t-g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~~ 304 (311)
T KOG1446|consen 247 -V--LSG----------SDDGTIHVWNL--ET-GKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS----SNLVFWLPDE 304 (311)
T ss_pred -E--EEe----------cCCCcEEEEEc--CC-CcEeeEecCCCCCCccccccCCceeeeeecC----ceEEEEeccc
Confidence 1 111 12235677776 23 344333322 34456677888665555432 3345666554
No 94
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.36 E-value=0.09 Score=49.81 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=45.3
Q ss_pred ceEEeccCCCCCCCCceeccccCccccceeecC-CCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCC
Q 007620 276 DIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG 354 (595)
Q Consensus 276 ~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 354 (595)
....+||+ .+|.....+....+.+..+..+| +++.++...- +....|| |+..+ .-+..+.....++
T Consensus 166 ~TCalWDi--e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c--D~~aklW--D~R~~--~c~qtF~ghesDI----- 232 (343)
T KOG0286|consen 166 MTCALWDI--ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC--DKSAKLW--DVRSG--QCVQTFEGHESDI----- 232 (343)
T ss_pred ceEEEEEc--ccceEEEEecCCcccEEEEecCCCCCCeEEeccc--ccceeee--eccCc--ceeEeeccccccc-----
Confidence 45677787 23323334555667788889999 8888776532 2333555 55542 2243442222211
Q ss_pred CCCeeeCCCCCEEEEEe
Q 007620 355 SPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 355 ~~~~~~~~dg~~l~~~~ 371 (595)
..+.+-|+|..++..+
T Consensus 233 -Nsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 233 -NSVRFFPSGDAFATGS 248 (343)
T ss_pred -ceEEEccCCCeeeecC
Confidence 1277888887655443
No 95
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.35 E-value=0.033 Score=52.68 Aligned_cols=214 Identities=15% Similarity=0.209 Sum_probs=120.1
Q ss_pred EEEecCCCCCCC---CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 8 GIHRLLPDDSLG---PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 8 ~~~~~~~~~~~g---~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
-|++|+..+..| ..+.|.++. .+.+.-+|-+|+..| -.+. +....|| |+++|+..+.+....+
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHt--gylScC~f~dD~~il-T~SG--------D~TCalW--Die~g~~~~~f~GH~g- 187 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHT--GYLSCCRFLDDNHIL-TGSG--------DMTCALW--DIETGQQTQVFHGHTG- 187 (343)
T ss_pred EEEecccccccccceeeeeecCcc--ceeEEEEEcCCCceE-ecCC--------CceEEEE--EcccceEEEEecCCcc-
Confidence 467777544454 334555332 368888999888643 2221 3445555 9999987777654332
Q ss_pred ccccccceEEec-CCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 85 LNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 85 ~~~~~~~~~Wsp-dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
.+-++..+| +++.++-..-+ ..-+++|
T Consensus 188 ---DV~slsl~p~~~ntFvSg~cD-------------------------------------------------~~aklWD 215 (343)
T KOG0286|consen 188 ---DVMSLSLSPSDGNTFVSGGCD-------------------------------------------------KSAKLWD 215 (343)
T ss_pred ---cEEEEecCCCCCCeEEecccc-------------------------------------------------cceeeee
Confidence 456788888 67654332100 0112234
Q ss_pred C-CCCeee-cC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccc
Q 007620 164 L-DGTAKD-FG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 164 ~-~g~~~~-lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~ 240 (595)
+ +|..+| .. ....+..+.|-|+|..++-.+.+ ...-+||+.....-.+.+.+..
T Consensus 216 ~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD-------------~tcRlyDlRaD~~~a~ys~~~~---------- 272 (343)
T KOG0286|consen 216 VRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD-------------ATCRLYDLRADQELAVYSHDSI---------- 272 (343)
T ss_pred ccCcceeEeecccccccceEEEccCCCeeeecCCC-------------ceeEEEeecCCcEEeeeccCcc----------
Confidence 4 443333 21 22345688999999877655432 2344667665443333332211
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeec
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (595)
..+..+..+|..|+ |.+.-+.| -.+.+||. .++...-.|...+.+++.+..+|||.+++..+|..
T Consensus 273 ~~gitSv~FS~SGR--lLfagy~d-----------~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 273 ICGITSVAFSKSGR--LLFAGYDD-----------FTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred cCCceeEEEccccc--EEEeeecC-----------CceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 01234567777776 44442211 24566675 45423335667788999999999999999887742
Q ss_pred ccceEEE
Q 007620 321 TSQTRTW 327 (595)
Q Consensus 321 ~~~~~L~ 327 (595)
..+||
T Consensus 338 --~lriW 342 (343)
T KOG0286|consen 338 --TLRIW 342 (343)
T ss_pred --heeec
Confidence 23554
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.34 E-value=0.017 Score=58.60 Aligned_cols=255 Identities=14% Similarity=0.143 Sum_probs=124.7
Q ss_pred CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-----EecccCCCccccccccceEE
Q 007620 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVW 94 (595)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-----~~lt~~~~~~~~~~~~~~~W 94 (595)
-+.++.+ +...++...+.|.|.+++--+ ....+..+|+.+... ++|-... +..+.+++|
T Consensus 159 hEi~l~h--gtk~Vsal~~Dp~GaR~~sGs----------~Dy~v~~wDf~gMdas~~~fr~l~P~E----~h~i~sl~y 222 (641)
T KOG0772|consen 159 HEIQLKH--GTKIVSALAVDPSGARFVSGS----------LDYTVKFWDFQGMDASMRSFRQLQPCE----THQINSLQY 222 (641)
T ss_pred ceEeccC--CceEEEEeeecCCCceeeecc----------ccceEEEEecccccccchhhhccCccc----ccccceeee
Confidence 3445543 222578889999998864322 235566668876432 3332111 123568999
Q ss_pred ecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC---CCeeec
Q 007620 95 VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD---GTAKDF 171 (595)
Q Consensus 95 spdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---g~~~~l 171 (595)
|+.|..|+++.-.. +.+++. .|+-.+........|+.|+. |-.-.
T Consensus 223 s~Tg~~iLvvsg~a-------------------------qakl~D------RdG~~~~e~~KGDQYI~Dm~nTKGHia~- 270 (641)
T KOG0772|consen 223 SVTGDQILVVSGSA-------------------------QAKLLD------RDGFEIVEFSKGDQYIRDMYNTKGHIAE- 270 (641)
T ss_pred cCCCCeEEEEecCc-------------------------ceeEEc------cCCceeeeeeccchhhhhhhccCCceee-
Confidence 99999887763211 001110 11111111134556666662 22333
Q ss_pred CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEe-ccCCCCccCCccccccccCCCCcee
Q 007620 172 GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVREL-CDLPPAEDIPVCYNSVREGMRSISW 249 (595)
Q Consensus 172 t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~w 249 (595)
.+..+|.|+.+..+.+.... ..+-+||++ .++.+++ ...+ -.+.+..+..-.|
T Consensus 271 -----lt~g~whP~~k~~FlT~s~D------------gtlRiWdv~~~k~q~qVik~k~--------~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 271 -----LTCGCWHPDNKEEFLTCSYD------------GTLRIWDVNNTKSQLQVIKTKP--------AGGKRVPVTSCAW 325 (641)
T ss_pred -----eeccccccCcccceEEecCC------------CcEEEEecCCchhheeEEeecc--------CCCcccCceeeec
Confidence 34568999999888776543 256677765 3333332 2111 0111111234679
Q ss_pred ecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc----ccCccccceeecCCCcEEEEEEeecccceE
Q 007620 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (595)
Q Consensus 250 spdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~----~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 325 (595)
++||+. |+ ....|+. |-.|+. +--.-.+.... .....++++.||+||+.|+.... +. .
T Consensus 326 nrdg~~-iA-agc~DGS-----------IQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~--D~--t 387 (641)
T KOG0772|consen 326 NRDGKL-IA-AGCLDGS-----------IQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF--DD--T 387 (641)
T ss_pred CCCcch-hh-hcccCCc-----------eeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccC--CC--c
Confidence 999983 22 1223332 222231 00000111111 11235789999999998876532 23 4
Q ss_pred EEEEeCCCCCCCcEEEee-cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 326 TWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 326 L~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
|-++||.-. + +.|.. ...-..+ |+. ...+|||.+.|+...
T Consensus 388 LKvWDLrq~--k-kpL~~~tgL~t~~--~~t-dc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 388 LKVWDLRQF--K-KPLNVRTGLPTPF--PGT-DCCFSPDDKLILTGT 428 (641)
T ss_pred eeeeecccc--c-cchhhhcCCCccC--CCC-ccccCCCceEEEecc
Confidence 555566542 1 33321 1111111 111 167899988776544
No 97
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.021 Score=60.57 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=50.5
Q ss_pred eEEEecCCCCCCCC-ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 7 IGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 7 ~~~~~~~~~~~~g~-~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
|.|.|+.. .+. .+.+.++. ..+....|+|+|+.|+-.+. ++ .+.++++.+|+..+.......
T Consensus 227 iriwd~~~---~~~~~~~l~gH~--~~v~~~~f~p~g~~i~Sgs~--------D~--tvriWd~~~~~~~~~l~~hs~-- 289 (456)
T KOG0266|consen 227 LRIWDLKD---DGRNLKTLKGHS--TYVTSVAFSPDGNLLVSGSD--------DG--TVRIWDVRTGECVRKLKGHSD-- 289 (456)
T ss_pred EEEeeccC---CCeEEEEecCCC--CceEEEEecCCCCEEEEecC--------CC--cEEEEeccCCeEEEeeeccCC--
Confidence 67778842 433 34555433 35889999999965555432 33 455558888876555433221
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
.++.+.+++||..|+-.
T Consensus 290 --~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 290 --GISGLAFSPDGNLLVSA 306 (456)
T ss_pred --ceEEEEECCCCCEEEEc
Confidence 57788999999987764
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.011 Score=63.84 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=50.4
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCC---
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPD--- 82 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~--- 82 (595)
|-+.++.| .+.++-+.. ....+....++|.|+.||.++- ..+|.++++..+. ...++....
T Consensus 120 vK~~~~~D---~s~~~~lrg--h~apVl~l~~~p~~~fLAvss~----------dG~v~iw~~~~~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 120 VKLLNLDD---SSQEKVLRG--HDAPVLQLSYDPKGNFLAVSSC----------DGKVQIWDLQDGILSKTLTGVDKDNE 184 (933)
T ss_pred EEEEeccc---cchheeecc--cCCceeeeeEcCCCCEEEEEec----------CceEEEEEcccchhhhhcccCCcccc
Confidence 33456663 444444443 3336889999999999988763 3566677887775 334433221
Q ss_pred ccccccccceEEecCCcEEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.........++|+|+|..+++.
T Consensus 185 ~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred ccccceeeeeeecCCCCeEEee
Confidence 1112234578999997766664
No 99
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.16 E-value=0.3 Score=48.25 Aligned_cols=215 Identities=15% Similarity=0.157 Sum_probs=99.3
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCC-ceeecCCCeeE
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS-ISWRADKPSTL 257 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~wspdg~~~l 257 (595)
.+.+|.|||++++.. -.| ...+-++|++.++.-.-.+.| -|......+.+. .....||+ +
T Consensus 99 ~~~ls~dgk~~~V~N-~TP----------a~SVtVVDl~~~kvv~ei~~P------GC~~iyP~~~~~F~~lC~DGs--l 159 (342)
T PF06433_consen 99 MFALSADGKFLYVQN-FTP----------ATSVTVVDLAAKKVVGEIDTP------GCWLIYPSGNRGFSMLCGDGS--L 159 (342)
T ss_dssp GEEE-TTSSEEEEEE-ESS----------SEEEEEEETTTTEEEEEEEGT------SEEEEEEEETTEEEEEETTSC--E
T ss_pred ceEEccCCcEEEEEc-cCC----------CCeEEEEECCCCceeeeecCC------CEEEEEecCCCceEEEecCCc--e
Confidence 678999999998774 344 458999999977654432222 111000011111 22344443 2
Q ss_pred EEEEeecCCCcccccCCcceEEeccCCCCCCCCcee----ccc--cCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI----LHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 258 ~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~----l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
..+ .+|. +| +... ++. .+.-+..+.++.++..+++-+. ...+|.+|+
T Consensus 160 ~~v-------------------~Ld~---~G-k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dl 212 (342)
T PF06433_consen 160 LTV-------------------TLDA---DG-KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADL 212 (342)
T ss_dssp EEE-------------------EETS---TS-SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEE
T ss_pred EEE-------------------EECC---CC-CEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEec
Confidence 222 2232 32 3321 111 1122345566666655665431 237999999
Q ss_pred CCCCCCcEEEeeccc-----ccccCCCCC-CCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCC
Q 007620 332 GSKDVAPRVLFDRVF-----ENVYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (595)
Q Consensus 332 ~~~~~~~~~l~~~~~-----~~~~~~~~~-~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (595)
.+. .++..-..+. ...-..||+ ..+.+.+..+.||+..+... . | +-+..-..+..+|++++
T Consensus 213 sg~--~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~-~---------g-sHKdpgteVWv~D~~t~ 279 (342)
T PF06433_consen 213 SGD--SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG-E---------G-SHKDPGTEVWVYDLKTH 279 (342)
T ss_dssp TTS--SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE---T---------T--TTS-EEEEEEEETTTT
T ss_pred cCC--cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC-C---------C-CccCCceEEEEEECCCC
Confidence 873 4444321111 000112444 34666666666776553211 1 1 12222334557899888
Q ss_pred ceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceee
Q 007620 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (595)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~ 466 (595)
+...-+... .... ...+|-|.+-+++..+. .-..|+++|..+|+..+
T Consensus 280 krv~Ri~l~------~~~~------Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 280 KRVARIPLE------HPID------SIAVSQDDKPLLYALSA--GDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEEEE------EEES------EEEEESSSS-EEEEEET--TTTEEEEEETTT--EEE
T ss_pred eEEEEEeCC------Cccc------eEEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEEe
Confidence 754433221 1110 02344466656665433 23679999998887644
No 100
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.16 E-value=0.078 Score=53.38 Aligned_cols=112 Identities=10% Similarity=0.227 Sum_probs=64.4
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
-+..+.|+.+|.+|+-...+ ..+.+||..+|..++...+-.. ..-+..|..+..
T Consensus 278 PI~slKWnk~G~yilS~~vD-------------~ttilwd~~~g~~~q~f~~~s~------------~~lDVdW~~~~~- 331 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGVD-------------GTTILWDAHTGTVKQQFEFHSA------------PALDVDWQSNDE- 331 (524)
T ss_pred ceEEEEEcCCCCEEEeccCC-------------ccEEEEeccCceEEEeeeeccC------------CccceEEecCce-
Confidence 45689999999999877643 3678999888877665433211 012355643322
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCC-CceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
|+.. ....-+++..+ .+. ....+....+.+..+.|.|.|..|+..+ +++..+||.+.-
T Consensus 332 ---F~ts----------~td~~i~V~kv---~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S--dD~TlkiWs~~~ 390 (524)
T KOG0273|consen 332 ---FATS----------STDGCIHVCKV---GEDRPVKTFIGHHGEVNALKWNPTGSLLASCS--DDGTLKIWSMGQ 390 (524)
T ss_pred ---Eeec----------CCCceEEEEEe---cCCCcceeeecccCceEEEEECCCCceEEEec--CCCeeEeeecCC
Confidence 2210 01112333232 111 3334555667788899999998777654 235557777543
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.14 E-value=0.041 Score=55.91 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=44.5
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc---c-----ccccceE
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL---N-----AVFGSFV 93 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~---~-----~~~~~~~ 93 (595)
++|. -.+...+...+|||.|..|+.++. ..|.-++|.+|-+.........-.. + +.+..-.
T Consensus 207 r~l~-P~E~h~i~sl~ys~Tg~~iLvvsg----------~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~ 275 (641)
T KOG0772|consen 207 RQLQ-PCETHQINSLQYSVTGDQILVVSG----------SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC 275 (641)
T ss_pred hccC-cccccccceeeecCCCCeEEEEec----------CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc
Confidence 4554 223336889999999999998863 4677788887665444432211000 0 1233557
Q ss_pred EecCCcEEEEE
Q 007620 94 WVNNSTLLIFT 104 (595)
Q Consensus 94 Wspdg~~l~~~ 104 (595)
|.|+.+..+.+
T Consensus 276 whP~~k~~FlT 286 (641)
T KOG0772|consen 276 WHPDNKEEFLT 286 (641)
T ss_pred cccCcccceEE
Confidence 99988877665
No 102
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.14 E-value=0.32 Score=55.66 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=35.2
Q ss_pred cccceEEccC-CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEec-CCcEEEEE
Q 007620 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-dg~~l~~~ 104 (595)
.+....|+|. +++||-.. . ...|.++|+.+++......... ..+..+.|+| ++..|+..
T Consensus 534 ~v~~l~~~~~~~~~las~~-~---------Dg~v~lWd~~~~~~~~~~~~H~----~~V~~l~~~p~~~~~L~Sg 594 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSN-F---------EGVVQVWDVARSQLVTEMKEHE----KRVWSIDYSSADPTLLASG 594 (793)
T ss_pred ceeeEEeccCCCCEEEEEe-C---------CCeEEEEECCCCeEEEEecCCC----CCEEEEEEcCCCCCEEEEE
Confidence 4677899885 55555433 1 3456677888776433322111 1466899996 67766554
No 103
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.26 Score=47.21 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=117.4
Q ss_pred CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
..+....||+||+.|+-.+. ...|.++|...|+.......+. .++....+......++......
T Consensus 15 ~~i~sl~fs~~G~~litss~----------dDsl~LYd~~~g~~~~ti~skk----yG~~~~~Fth~~~~~i~sStk~-- 78 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSE----------DDSLRLYDSLSGKQVKTINSKK----YGVDLACFTHHSNTVIHSSTKE-- 78 (311)
T ss_pred CceeEEEecCCCCEEEEecC----------CCeEEEEEcCCCceeeEeeccc----ccccEEEEecCCceEEEccCCC--
Confidence 36889999999999877543 2356666888777554444332 1455667776655555532110
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecC-CCCeeeeeEECCCCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVYTAVEPSPDQK 187 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt-~~~~~~~~~~SpDg~ 187 (595)
| ..|-.+++ +.+ +|-.. ....+..++.||-+.
T Consensus 79 ------------------------------------d---------~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d 113 (311)
T KOG1446|consen 79 ------------------------------------D---------DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD 113 (311)
T ss_pred ------------------------------------C---------CceEEEEeecCceEEEcCCCCceEEEEEecCCCC
Confidence 0 11222233 222 22111 123456889999886
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~ 267 (595)
..+-.+.+ ..|.+||+...+..-+-... +..-.++.|+|- +++...+
T Consensus 114 ~FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~--------------~~pi~AfDp~GL---ifA~~~~--- 160 (311)
T KOG1446|consen 114 TFLSSSLD-------------KTVRLWDLRVKKCQGLLNLS--------------GRPIAAFDPEGL---IFALANG--- 160 (311)
T ss_pred eEEecccC-------------CeEEeeEecCCCCceEEecC--------------CCcceeECCCCc---EEEEecC---
Confidence 55444432 36888998865544432221 011246677763 3432221
Q ss_pred cccccCCcceEEeccCCCCCCCCcee---cccc-CccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee
Q 007620 268 ANVEVSPRDIIYTQPAEPAEGEKPEI---LHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (595)
Q Consensus 268 ~~~~~~~~~~~~~~d~~~~~g~~~~~---l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~ 343 (595)
...|.++|+--++. .+.. +... ..+...+.|||||+.++... ...-++++|.=.| ....-+.
T Consensus 161 -------~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G--~~~~tfs 226 (311)
T KOG1446|consen 161 -------SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDG--TVKSTFS 226 (311)
T ss_pred -------CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCC--cEeeeEe
Confidence 11333333301222 3322 2211 23466789999999755543 2236778886553 3222221
Q ss_pred cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 344 RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
..... -..|+ ...++|||+.++..+
T Consensus 227 ~~~~~-~~~~~--~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 227 GYPNA-GNLPL--SATFTPDSKFVLSGS 251 (311)
T ss_pred eccCC-CCcce--eEEECCCCcEEEEec
Confidence 11100 00111 267889999887665
No 104
>PRK10115 protease 2; Provisional
Probab=97.13 E-value=0.14 Score=57.18 Aligned_cols=119 Identities=11% Similarity=0.089 Sum_probs=64.6
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce--EEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
..+.|||||++|+|....... -..+|++.|+.++. ...+... ...+.|++|++.
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~--------E~~~l~v~d~~tg~~l~~~i~~~----------------~~~~~w~~D~~~ 185 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSR--------RQYGIRFRNLETGNWYPELLDNV----------------EPSFVWANDSWT 185 (686)
T ss_pred eEEEECCCCCEEEEEecCCCc--------EEEEEEEEECCCCCCCCccccCc----------------ceEEEEeeCCCE
Confidence 478999999999999754321 13579999998774 1222110 124899999984
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCC--Cceecccc-Cccccceee-cCCCcEEEEEEeecccceEEEEEeC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPEILHKL-DLRFRSVSW-CDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~--~~~~l~~~-~~~~~~~~w-spDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
+++... +.... ....+|++++ ..+ +.+.+... +.......| +.|++.++...... ....+++++.
T Consensus 186 -~~y~~~-~~~~~-----~~~~v~~h~l---gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-~~~~~~l~~~ 254 (686)
T PRK10115 186 -FYYVRK-HPVTL-----LPYQVWRHTI---GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-TTSEVLLLDA 254 (686)
T ss_pred -EEEEEe-cCCCC-----CCCEEEEEEC---CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-ccccEEEEEC
Confidence 666533 21101 1246777776 222 22334432 222222334 44787655443222 2235666664
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.11 E-value=0.031 Score=60.62 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+++-+|+++|+-+. ...|-++++........+...+ +.+..+.+.|.+..|+..
T Consensus 99 ~r~~~v~g~g~~iaagsd----------D~~vK~~~~~D~s~~~~lrgh~----apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSD----------DTAVKLLNLDDSSQEKVLRGHD----APVLQLSYDPKGNFLAVS 156 (933)
T ss_pred ceEEEEecCCcEEEeecC----------ceeEEEEeccccchheeecccC----CceeeeeEcCCCCEEEEE
Confidence 667899999999999763 3667778877665444433222 257789999999998886
No 106
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0034 Score=65.63 Aligned_cols=119 Identities=21% Similarity=0.227 Sum_probs=79.7
Q ss_pred CCEEEEEEecCCCcceEEEEeCCCCcee-----eEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCC
Q 007620 438 QLKILTSKESKTEITQYHILSWPLKKSS-----QITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (595)
Q Consensus 438 ~~~l~~~~~s~~~p~~l~~~d~~~~~~~-----~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~ 512 (595)
...+.|..+|.-.|+.+|.+|+..+++. .++. +.++.+......+.+.+++.||.+|+-.+++=...+. ..+
T Consensus 393 ~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~-~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~--dg~ 469 (712)
T KOG2237|consen 393 SSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITV-VLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIKL--DGS 469 (712)
T ss_pred CceEEEEEeccCCCCeEEEeeccCCCCCCcceeeecc-ccCcccccceEEEEEEEecCCCCccceEEEEechhhh--cCC
Confidence 3678899999999999999999887432 2333 2355555545899999999999999999998443332 235
Q ss_pred CcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCch
Q 007620 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR 577 (595)
Q Consensus 513 lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~ 577 (595)
.|+++|+|++ | + +.=.|. |. .+--.|..+|++... +++| ||.+++-.
T Consensus 470 ~P~LLygYGa-y------~-isl~p~-f~----~srl~lld~G~Vla~----a~VR-GGGe~G~~ 516 (712)
T KOG2237|consen 470 KPLLLYGYGA-Y------G-ISLDPS-FR----ASRLSLLDRGWVLAY----ANVR-GGGEYGEQ 516 (712)
T ss_pred CceEEEEecc-c------c-eeeccc-cc----cceeEEEecceEEEE----Eeec-cCcccccc
Confidence 5999999854 1 1 111121 21 122467779988776 5666 45556543
No 107
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=97.08 E-value=0.0044 Score=60.89 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=77.8
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.++.++|||+....+-.+. + ..|-+||.. ..+.++|... . -.++...|.|...
T Consensus 182 aIRdlafSpnDskF~t~Sd-D------------g~ikiWdf~~~kee~vL~GH-g------------wdVksvdWHP~kg 235 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSD-D------------GTIKIWDFRMPKEERVLRGH-G------------WDVKSVDWHPTKG 235 (464)
T ss_pred hhheeccCCCCceeEEecC-C------------CeEEEEeccCCchhheeccC-C------------CCcceeccCCccc
Confidence 4567899996544333322 1 367788854 5555555321 1 1245788998865
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
|... + + ....+-+|| |.+|...-.|......+..+.|++++..|+..+. + ..+-++|+.+.
T Consensus 236 --Lias-g--s--------kDnlVKlWD--prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk--D--~~~kv~DiR~m 296 (464)
T KOG0284|consen 236 --LIAS-G--S--------KDNLVKLWD--PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK--D--QSCKVFDIRTM 296 (464)
T ss_pred --eeEE-c--c--------CCceeEeec--CCCcchhhhhhhccceEEEEEEcCCCCeeEEccC--C--ceEEEEehhHh
Confidence 3222 1 1 112455667 4554344445555666788999999988776542 1 25667787642
Q ss_pred CCCcEEE--eecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 335 DVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 335 ~~~~~~l--~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
++.... ...++.. +.|.|--..|+.+.
T Consensus 297 -kEl~~~r~Hkkdv~~---------~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 297 -KELFTYRGHKKDVTS---------LTWHPLNESLFTSG 325 (464)
T ss_pred -HHHHHhhcchhhhee---------eccccccccceeec
Confidence 222211 1223333 67887666665543
No 108
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.019 Score=58.81 Aligned_cols=146 Identities=10% Similarity=0.197 Sum_probs=92.4
Q ss_pred cceEEccCCCEEEEEEecc--cccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 34 NFVSWSPDGKRIAFSVRVD--EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~--~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
....|.+-|+-|..++..+ +....+-+.+.||++++. |+...+--..++ .+.++.|+|+|+-+++..
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~G----PVhdv~W~~s~~EF~Vvy------ 289 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEG----PVHDVTWSPSGREFAVVY------ 289 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCC----CceEEEECCCCCEEEEEE------
Confidence 3567999999988887763 111123456889999997 554444222232 577999999999776641
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCCCeeeeeEECCCCCeEEE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLI 191 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~~~~~~~~~SpDg~~l~~ 191 (595)
| ++.+.+-++|+.|.+.--..++-...+-|||-|+.|++
T Consensus 290 ------------------G-----------------------fMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 290 ------------------G-----------------------FMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILL 328 (566)
T ss_pred ------------------e-----------------------cccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEE
Confidence 1 02345556777776553333332345779999999998
Q ss_pred EEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
..-.. ...++-+||+.. .+.|..... .+..-+.|+|||..
T Consensus 329 AGFGN----------L~G~mEvwDv~n--~K~i~~~~a------------~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 329 AGFGN----------LPGDMEVWDVPN--RKLIAKFKA------------ANTTVFEWSPDGEY 368 (566)
T ss_pred eecCC----------CCCceEEEeccc--hhhcccccc------------CCceEEEEcCCCcE
Confidence 86322 256899999876 334433221 11234899999985
No 109
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.04 E-value=0.063 Score=51.74 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=68.9
Q ss_pred ccceEEc-cCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc-ccccccceEEecCCcEEEEEecCCCC
Q 007620 33 INFVSWS-PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 33 ~~~~~~S-PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~-~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.....+. +|| .|++... ..+.++|+++++.+.+....... .......+...|+|+ |+|+......
T Consensus 42 ~~G~~~~~~~g-~l~v~~~-----------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~ 108 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADS-----------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGG 108 (246)
T ss_dssp EEEEEEECTTS-EEEEEET-----------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBC
T ss_pred CceEEEEccCC-EEEEEEc-----------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCc
Confidence 4445556 665 4544431 33455599999877776542110 111345788999999 6775321100
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCC-CeeeeeEECCCCCeE
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYV 189 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~-~~~~~~~~SpDg~~l 189 (595)
. ... ....||+++.+++.+.+... .....++|||||+.|
T Consensus 109 ~----------------------------------~~~------~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 109 A----------------------------------SGI------DPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp T----------------------------------TCG------GSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEE
T ss_pred c----------------------------------ccc------cccceEEECCCCeEEEEecCcccccceEECCcchhe
Confidence 0 000 01578888888766555332 233589999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCC
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
+++... ...|+.++++
T Consensus 149 yv~ds~------------~~~i~~~~~~ 164 (246)
T PF08450_consen 149 YVADSF------------NGRIWRFDLD 164 (246)
T ss_dssp EEEETT------------TTEEEEEEEE
T ss_pred eecccc------------cceeEEEecc
Confidence 887543 2368888874
No 110
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.04 E-value=0.99 Score=52.99 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=24.6
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
..++++|++..|+++... ...|+++|..++....+
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVF 720 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEE
Confidence 367899987777776432 24788999887766554
No 111
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.00 E-value=0.025 Score=60.30 Aligned_cols=81 Identities=6% Similarity=-0.008 Sum_probs=49.3
Q ss_pred eEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCC
Q 007620 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 356 (595)
Q Consensus 277 ~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 356 (595)
.+.+||+ -+|...+.+......+..+.+||+|+.|+..+ +.+ .|.++|+.++. -...+.++ .+...+
T Consensus 558 tVRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--ed~--~I~iWDl~~~~-~v~~l~~H--t~ti~S---- 624 (707)
T KOG0263|consen 558 TVRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGD--EDG--LIKIWDLANGS-LVKQLKGH--TGTIYS---- 624 (707)
T ss_pred eEEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecc--cCC--cEEEEEcCCCc-chhhhhcc--cCceeE----
Confidence 4556676 35444444545566788999999999988764 234 56667887741 11222233 122222
Q ss_pred CeeeCCCCCEEEEEe
Q 007620 357 MMTRTSTGTNVIAKI 371 (595)
Q Consensus 357 ~~~~~~dg~~l~~~~ 371 (595)
++++.||..|+...
T Consensus 625 -lsFS~dg~vLasgg 638 (707)
T KOG0263|consen 625 -LSFSRDGNVLASGG 638 (707)
T ss_pred -EEEecCCCEEEecC
Confidence 78899998776554
No 112
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=96.96 E-value=0.0011 Score=66.02 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=48.2
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCC----C---cccCCCCchhHHHh
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP----N---EFSGMTPTSSLIFL 552 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp----~---~~~~~~~~~~q~la 552 (595)
...|.+.|...++..+.++|+.|.+. +.|.|+||..|++ |.+...+.|-+ . .+..........||
T Consensus 86 Y~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgH----g~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LA 157 (390)
T PF12715_consen 86 YTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGH----GGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLA 157 (390)
T ss_dssp EEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--T----T--HHHHCT---SSGCG--STTSTTT-HHHHHH
T ss_pred eEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCC----CCCcccccCCcccccccchhhccccccHHHHHH
Confidence 37888999999999999999999885 3477999998864 22222233221 1 11111112245899
Q ss_pred ccCeEEEeCCCCceeecCC
Q 007620 553 ARRFAVLAGPSIPIIGEGD 571 (595)
Q Consensus 553 ~~GY~Vl~~~~~~~~~~~~ 571 (595)
.+||+||. +|.+-+|+++
T Consensus 158 k~GYVvla-~D~~g~GER~ 175 (390)
T PF12715_consen 158 KRGYVVLA-PDALGFGERG 175 (390)
T ss_dssp TTTSEEEE-E--TTSGGG-
T ss_pred hCCCEEEE-Eccccccccc
Confidence 99999999 9988888844
No 113
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.95 E-value=0.034 Score=53.82 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=49.7
Q ss_pred CCCceeeecCCCC--CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEe
Q 007620 18 LGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (595)
Q Consensus 18 ~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws 95 (595)
++...++...... .....+.+||||+.+||+... ++...|++.... +....+.... .+..+.|+
T Consensus 9 ~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~-------~~~~~L~~~~~~-~~~~~~~~g~------~l~~PS~d 74 (253)
T PF10647_consen 9 GGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEG-------DGGRSLYVGPAG-GPVRPVLTGG------SLTRPSWD 74 (253)
T ss_pred CCceeECCCCcCcCCccccceEECCCCCeEEEEEEc-------CCCCEEEEEcCC-CcceeeccCC------cccccccc
Confidence 5566666654332 157899999999999999832 456899998865 4444442111 46789999
Q ss_pred cCCcEEEEE
Q 007620 96 NNSTLLIFT 104 (595)
Q Consensus 96 pdg~~l~~~ 104 (595)
++|...++.
T Consensus 75 ~~g~~W~v~ 83 (253)
T PF10647_consen 75 PDGWVWTVD 83 (253)
T ss_pred CCCCEEEEE
Confidence 998765553
No 114
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.94 E-value=0.018 Score=57.85 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=47.0
Q ss_pred eEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 7 IGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
|+|+++-+ .++- |...+ ....+...+||++|..+.-.+- + ..|-+.|+++|....-.....
T Consensus 239 vklW~vy~---~~~~lrtf~g--H~k~Vrd~~~s~~g~~fLS~sf--------D--~~lKlwDtETG~~~~~f~~~~--- 300 (503)
T KOG0282|consen 239 VKLWNVYD---DRRCLRTFKG--HRKPVRDASFNNCGTSFLSASF--------D--RFLKLWDTETGQVLSRFHLDK--- 300 (503)
T ss_pred EEEEEEec---Ccceehhhhc--chhhhhhhhccccCCeeeeeec--------c--eeeeeeccccceEEEEEecCC---
Confidence 67777763 2322 22322 2235889999999998544432 2 345555999998554433322
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
......+.||+..+++.
T Consensus 301 --~~~cvkf~pd~~n~fl~ 317 (503)
T KOG0282|consen 301 --VPTCVKFHPDNQNIFLV 317 (503)
T ss_pred --CceeeecCCCCCcEEEE
Confidence 34567788998666664
No 115
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.18 Score=52.50 Aligned_cols=57 Identities=19% Similarity=0.391 Sum_probs=42.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+.+-..||..+ .||... ...+|+.+..+|+...|....+ ..+.++.|+++|+.|+..
T Consensus 179 Y~nlldWss~n-~laVal-----------g~~vylW~~~s~~v~~l~~~~~----~~vtSv~ws~~G~~LavG 235 (484)
T KOG0305|consen 179 YLNLLDWSSAN-VLAVAL-----------GQSVYLWSASSGSVTELCSFGE----ELVTSVKWSPDGSHLAVG 235 (484)
T ss_pred hhhHhhcccCC-eEEEEe-----------cceEEEEecCCCceEEeEecCC----CceEEEEECCCCCEEEEe
Confidence 45566899444 555543 3678999999999888876632 157899999999999885
No 116
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.87 E-value=0.16 Score=51.83 Aligned_cols=157 Identities=15% Similarity=0.080 Sum_probs=85.1
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCC--CEEEEEEecccccccCCCceEEEEEECCCCceEecccC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDG--KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG--~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (595)
....|+|+++.+ .-...+...+- ...+....|||-| .-|||...... ..-..+-++.+..+.....-+.
T Consensus 150 v~~sl~i~e~t~---n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~-----~kpa~~~i~sIp~~s~l~tk~l 220 (561)
T COG5354 150 VGSSLYIHEITD---NIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKL-----NKPAMVRILSIPKNSVLVTKNL 220 (561)
T ss_pred ccCeEEEEecCC---ccccCchhhcc-ccceeeEEecCCCCCceEEEEccccC-----CCCcEEEEEEccCCCeeeeeee
Confidence 346778887642 11222222222 1247889999964 45677654321 1223444444443332221111
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEE
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (595)
... .--.+.|.+.|+.|.+..... + +.++ .|+..+.||
T Consensus 221 fk~----~~~qLkW~~~g~~ll~l~~t~-----------------------------~------ksnK---syfgesnLy 258 (561)
T COG5354 221 FKV----SGVQLKWQVLGKYLLVLVMTH-----------------------------T------KSNK---SYFGESNLY 258 (561)
T ss_pred Eee----cccEEEEecCCceEEEEEEEe-----------------------------e------eccc---ceeccceEE
Confidence 110 123789999999988863210 0 0011 233568899
Q ss_pred EEcCCCC-eeec-CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 161 LGSLDGT-AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 161 ~~d~~g~-~~~l-t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
++++++. .+.. .-.+.+.++.|+|++++.++....- +..+.++|+.+...
T Consensus 259 l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~-----------pa~~s~~~lr~Nl~ 310 (561)
T COG5354 259 LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM-----------PASVSVFDLRGNLR 310 (561)
T ss_pred EEeecccccceeccccccceeeeecccCCceeEEeccc-----------ccceeecccccceE
Confidence 9999763 2222 2234567899999999988886332 33566777777643
No 117
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=96.84 E-value=0.00096 Score=66.63 Aligned_cols=61 Identities=26% Similarity=0.337 Sum_probs=40.8
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
.....|+|++.+|..|.|||++|.+-+ .++|+||.+|+. |+- ...+.....||++||+||
T Consensus 54 ~~vy~v~f~s~~g~~V~g~l~~P~~~~----~~~Pavv~~hGy------------g~~----~~~~~~~~~~a~~G~~vl 113 (320)
T PF05448_consen 54 VEVYDVSFESFDGSRVYGWLYRPKNAK----GKLPAVVQFHGY------------GGR----SGDPFDLLPWAAAGYAVL 113 (320)
T ss_dssp EEEEEEEEEEGGGEEEEEEEEEES-SS----SSEEEEEEE--T------------T------GGGHHHHHHHHHTT-EEE
T ss_pred EEEEEEEEEccCCCEEEEEEEecCCCC----CCcCEEEEecCC------------CCC----CCCcccccccccCCeEEE
Confidence 367789999999999999999998522 356999987642 111 011122346899999999
Q ss_pred e
Q 007620 560 A 560 (595)
Q Consensus 560 ~ 560 (595)
.
T Consensus 114 ~ 114 (320)
T PF05448_consen 114 A 114 (320)
T ss_dssp E
T ss_pred E
Confidence 7
No 118
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.38 Score=45.28 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=61.7
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC-ceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
+..++||++|.+|+..+.. ..+|+|.++. ++...+.-+. .+...+....|.|-..
T Consensus 108 VK~Vaws~sG~~LATCSRD-------------KSVWiWe~deddEfec~aVL~----------~HtqDVK~V~WHPt~d- 163 (312)
T KOG0645|consen 108 VKCVAWSASGNYLATCSRD-------------KSVWIWEIDEDDEFECIAVLQ----------EHTQDVKHVIWHPTED- 163 (312)
T ss_pred eeEEEEcCCCCEEEEeeCC-------------CeEEEEEecCCCcEEEEeeec----------cccccccEEEEcCCcc-
Confidence 4578999999999988643 3688888763 3332222111 0111123467777543
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce---eccccCccccceeecCCCcEEEEEEeecccceEEEE--Ee
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL--VC 330 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~---~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~--~d 330 (595)
|.+-. ...+.+.+++. +.++... .|......+....|.+.|..++.-+ +++...||+ .+
T Consensus 164 -lL~S~-----------SYDnTIk~~~~--~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s--dD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 164 -LLFSC-----------SYDNTIKVYRD--EDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS--DDGTVSIWRLYTD 227 (312)
T ss_pred -eeEEe-----------ccCCeEEEEee--cCCCCeeEEEEecCccceEEEEEecCCCceEEEec--CCcceEeeeeccC
Confidence 22211 22334444442 1222322 2322233455677888887777654 345567887 45
Q ss_pred CCC
Q 007620 331 PGS 333 (595)
Q Consensus 331 ~~~ 333 (595)
+..
T Consensus 228 ~~~ 230 (312)
T KOG0645|consen 228 LSG 230 (312)
T ss_pred cch
Confidence 443
No 119
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.82 E-value=0.58 Score=45.88 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=48.7
Q ss_pred EEEecCCCCCCC-CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEeccc-CCCccc
Q 007620 8 GIHRLLPDDSLG-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDICL 85 (595)
Q Consensus 8 ~~~~~~~~~~~g-~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~-~~~~~~ 85 (595)
||.+.. +| .+-++|++. ..+....||-||..||-- +-..+|.+....+|..+.... .-.
T Consensus 89 flW~~~----~ge~~~eltgHK--DSVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~--- 149 (399)
T KOG0296|consen 89 FLWDIS----TGEFAGELTGHK--DSVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE--- 149 (399)
T ss_pred EEEEcc----CCcceeEecCCC--CceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC---
Confidence 566776 44 445666433 368899999999877642 234566666777776544432 222
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
.+..+.|.|-+..|++.
T Consensus 150 --dieWl~WHp~a~illAG 166 (399)
T KOG0296|consen 150 --DIEWLKWHPRAHILLAG 166 (399)
T ss_pred --ceEEEEecccccEEEee
Confidence 46788999988776664
No 120
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=96.80 E-value=0.0024 Score=66.58 Aligned_cols=69 Identities=22% Similarity=0.360 Sum_probs=48.6
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCccc-CCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS-GMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~-~~~~~~~q~la~~GY~Vl 559 (595)
..|.|+++..||.+|+|+|++|.. + + |.|+||..| |..+.. ..+....+.|+++||+||
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~-~--~--~~P~Vli~g---------------G~~~~~~~~~~~~~~~La~~Gy~vl 226 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKG-D--G--PFPTVLVCG---------------GLDSLQTDYYRLFRDYLAPRGIAML 226 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCC-C--C--CccEEEEeC---------------CcccchhhhHHHHHHHHHhCCCEEE
Confidence 688999998899999999999973 2 2 448888643 222111 111123478999999999
Q ss_pred eCCCCceeecC
Q 007620 560 AGPSIPIIGEG 570 (595)
Q Consensus 560 ~~~~~~~~~~~ 570 (595)
. +|.|..|..
T Consensus 227 ~-~D~pG~G~s 236 (414)
T PRK05077 227 T-IDMPSVGFS 236 (414)
T ss_pred E-ECCCCCCCC
Confidence 9 999977653
No 121
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.79 E-value=0.079 Score=53.93 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=80.1
Q ss_pred cccceEEccCCCEEEEEEeccccc-ccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEED-NVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~-~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.-....|.+.|+.|.++..+.-.. ..+-+.++||++++.....+..-...+ .+..+.|.|++++++...
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~-----pVhdf~W~p~S~~F~vi~----- 293 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKD-----PVHDFTWEPLSSRFAVIS----- 293 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccc-----cceeeeecccCCceeEEe-----
Confidence 456789999999999988763211 111345889999997544333222233 577999999999877752
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCCCeeeeeEECCCCCeEE
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~~~~~~~~~SpDg~~l~ 190 (595)
| + ....+-++++.|.++-...+..-..+.|||.+++|+
T Consensus 294 -------------------g-------~----------------~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il 331 (561)
T COG5354 294 -------------------G-------Y----------------MPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYIL 331 (561)
T ss_pred -------------------c-------c----------------cccceeecccccceEEecCCcccccccccCcccEEE
Confidence 1 0 112333455555555444333233577999999999
Q ss_pred EEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
+..-... ...+.++|..+.-.
T Consensus 332 ~agF~nl----------~gni~i~~~~~rf~ 352 (561)
T COG5354 332 FAGFDNL----------QGNIEIFDPAGRFK 352 (561)
T ss_pred EecCCcc----------ccceEEeccCCceE
Confidence 8864322 34677888776543
No 122
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.78 E-value=0.24 Score=57.99 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=65.5
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCC-CC-ccC-Ccc-ccc-----cccCCCCce
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP-PA-EDI-PVC-YNS-----VREGMRSIS 248 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~-~~~-~~~-~~~-----~~~~~~~~~ 248 (595)
..++++|||++|+++... ...|.++|++++..+.+.... .. ..+ ..+ .++ .-..+..+.
T Consensus 743 ~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 743 SGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred cEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 468999999998877542 247889998866554433210 00 000 000 000 001233567
Q ss_pred eecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC--------------ccccceeecCCCcEEE
Q 007620 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--------------LRFRSVSWCDDSLALV 314 (595)
Q Consensus 249 wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~--------------~~~~~~~wspDg~~l~ 314 (595)
+.++|. ||... . ..+.+.++|. +++....+.... .....+.+++||..++
T Consensus 811 vd~dG~--LYVAD---s--------~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 811 CAKDGQ--IYVAD---S--------YNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred EeCCCc--EEEEE---C--------CCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 788875 54442 1 1234555564 333333222110 1234567888887655
Q ss_pred EEEeecccceEEEEEeCCCC
Q 007620 315 NETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 315 ~~~~~~~~~~~L~~~d~~~~ 334 (595)
.+. .+..|.++|+.++
T Consensus 875 aDt----~Nn~Irvid~~~~ 890 (1057)
T PLN02919 875 ADT----NNSLIRYLDLNKG 890 (1057)
T ss_pred EEC----CCCEEEEEECCCC
Confidence 543 3447888998874
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.74 E-value=0.3 Score=46.87 Aligned_cols=58 Identities=22% Similarity=0.219 Sum_probs=41.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.....+||+-|.+||.-.. ...|.++|..+-. .+.++..-. .+.++.||+||+.|+-.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~----------nG~vvI~D~~T~~iar~lsaH~~-----pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCA----------NGRVVIYDFDTFRIARMLSAHVR-----PITSLCWSRDGRKLLTS 83 (405)
T ss_pred ccceEEeccCcceeeeecc----------CCcEEEEEccccchhhhhhcccc-----ceeEEEecCCCCEeeee
Confidence 4667899999999998664 2456667877744 344443333 57899999999988765
No 124
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=96.57 E-value=0.026 Score=57.57 Aligned_cols=57 Identities=21% Similarity=0.519 Sum_probs=36.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|||||.-|.-... ++.-.+| .. +|..+ .|....+ .+-..+|.|++..|+|.
T Consensus 106 A~~~gRW~~dGtgLlt~GE--------DG~iKiW--Sr-sGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAGE--------DGVIKIW--SR-SGMLRSTVVQNEE-----SIRCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhcccCCCCceeeeecC--------CceEEEE--ec-cchHHHHHhhcCc-----eeEEEEECCCCCceEEe
Confidence 4778899999987654421 4455566 43 44433 2322222 45588999999988886
No 125
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.55 E-value=0.043 Score=53.52 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=51.1
Q ss_pred eeeEEEecCCCCCCCCceeeecCC-CCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..|||+|+++ =.-...|...+ ........+.++.+.+|||-..+ ...+|.++|+.+=++.-......
T Consensus 106 e~IyIydI~~---MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--------t~GdV~l~d~~nl~~v~~I~aH~- 173 (391)
T KOG2110|consen 106 ESIYIYDIKD---MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--------TSGDVVLFDTINLQPVNTINAHK- 173 (391)
T ss_pred ccEEEEeccc---ceeehhhhccCCCccceEeeccCCCCceEEecCCC--------CCceEEEEEcccceeeeEEEecC-
Confidence 4589998873 12222333222 22224455566667799998654 35788888986544332222111
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+.+..+++++||.+|+-.
T Consensus 174 ---~~lAalafs~~G~llATA 191 (391)
T KOG2110|consen 174 ---GPLAALAFSPDGTLLATA 191 (391)
T ss_pred ---CceeEEEECCCCCEEEEe
Confidence 256789999999998875
No 126
>PTZ00420 coronin; Provisional
Probab=96.53 E-value=0.59 Score=50.50 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=40.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+....|+|++..++.++.. + ..|.++|+.+++......... .+.++.|+|||+.|+..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~-------D--gtIrIWDl~tg~~~~~i~~~~-----~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGF-------D--SFVNIWDIENEKRAFQINMPK-----KLSSLKWNIKGNLLSGT 185 (568)
T ss_pred cEEEEEECCCCCeEEEEEeC-------C--CeEEEEECCCCcEEEEEecCC-----cEEEEEECCCCCEEEEE
Confidence 58889999999987666543 2 456666988776432222222 46789999999988664
No 127
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.12 Score=54.26 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=76.0
Q ss_pred CCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEEEec
Q 007620 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
.+...++..+.||||++||+.+- ....||.+..+..- .+.+-..+. .....+.+.++-|+..|++...
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~---------~~~~iy~L~~~~~vk~~~v~~~~~--~~~~a~~i~ftid~~k~~~~s~ 448 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTV---------SRTKIYRLQPDPNVKVINVDDVPL--ALLDASAISFTIDKNKLFLVSK 448 (691)
T ss_pred CCccceeeeccCCCCCEEEEeec---------cceEEEEeccCcceeEEEeccchh--hhccceeeEEEecCceEEEEec
Confidence 44556888999999999999763 35778888776521 222211111 1112346677777776665421
Q ss_pred CCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC----CeeecCC---CCeeee
Q 007620 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG----TAKDFGT---PAVYTA 179 (595)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~lt~---~~~~~~ 179 (595)
. ..+|..+.+++ +...+.. -.....
T Consensus 449 ~------------------------------------------------~~~le~~el~~ps~kel~~~~~~~~~~~I~~ 480 (691)
T KOG2048|consen 449 N------------------------------------------------IFSLEEFELETPSFKELKSIQSQAKCPSISR 480 (691)
T ss_pred c------------------------------------------------cceeEEEEecCcchhhhhccccccCCCccee
Confidence 0 11223333311 1112211 124567
Q ss_pred eEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEec
Q 007620 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (595)
Q Consensus 180 ~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~ 225 (595)
+..||||++|++.... ..|++|++++++.+.+.
T Consensus 481 l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 481 LVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLK 513 (691)
T ss_pred EEEcCCCCEEEEEecc-------------ceEEEEEcccceeecch
Confidence 8899999999999742 38999999999887765
No 128
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.44 E-value=0.72 Score=45.69 Aligned_cols=135 Identities=14% Similarity=0.059 Sum_probs=63.7
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCC-CceeecCCCee
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR-SISWRADKPST 256 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~wspdg~~~ 256 (595)
....++.++.+++|.+. ...++..|+.+...+.....+...+... -.+++.+.. .+++.+... .
T Consensus 187 ~~~~~~~~~~~~~F~Sy-------------~G~v~~~dlsg~~~~~~~~~~~~t~~e~-~~~WrPGG~Q~~A~~~~~~-r 251 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSY-------------EGNVYSADLSGDSAKFGKPWSLLTDAEK-ADGWRPGGWQLIAYHAASG-R 251 (342)
T ss_dssp S--EEETTTTEEEEEBT-------------TSEEEEEEETTSSEEEEEEEESS-HHHH-HTTEEE-SSS-EEEETTTT-E
T ss_pred cccceECCCCeEEEEec-------------CCEEEEEeccCCcccccCcccccCcccc-ccCcCCcceeeeeeccccC-e
Confidence 35566777777777764 3478888888776655543322110000 011222222 244444333 3
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
||.+-. .+....--.....+|++|+ +.++...-...+....++..|.|.+-++|.-.. ....|+++|+.++
T Consensus 252 lyvLMh--~g~~gsHKdpgteVWv~D~---~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tG 322 (342)
T PF06433_consen 252 LYVLMH--QGGEGSHKDPGTEVWVYDL---KTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEE--E--TT-TTS-EEEEEEEET---TTTEEEEEEEEEEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT-
T ss_pred EEEEec--CCCCCCccCCceEEEEEEC---CCCeEEEEEeCCCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCC
Confidence 554422 2211111133347888886 322222222333345578888888865543222 2237999999884
No 129
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.35 E-value=0.4 Score=46.23 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=26.3
Q ss_pred Ccee-ccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 290 KPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 290 ~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
.+-. |....+.+....|.+||..|...+.. . ..|...|+.-
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk-~--dkIl~WDiR~ 282 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARK-D--DKILCWDIRY 282 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccC-C--CeEEEEeehh
Confidence 4433 44556778899999999987665321 1 2566667653
No 130
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.25 E-value=2.2 Score=49.26 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=60.9
Q ss_pred CceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc-cCccccceeecCCCcEEEEEEeecccce
Q 007620 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQT 324 (595)
Q Consensus 246 ~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (595)
.++|..||+. +.+...+... ..+..+.+++- + |+.....+ .++--..++|.|.|..++.... .....
T Consensus 214 ~ISWRGDG~y--FAVss~~~~~-----~~~R~iRVy~R---e-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~ 281 (928)
T PF04762_consen 214 RISWRGDGEY--FAVSSVEPET-----GSRRVIRVYSR---E-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRH 281 (928)
T ss_pred EEEECCCCcE--EEEEEEEcCC-----CceeEEEEECC---C-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCc
Confidence 5889999983 2222222111 01335566663 3 34433322 2333567899999998776543 23345
Q ss_pred EEEEEeCCCCCCCcEE--E-e---ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEe
Q 007620 325 RTWLVCPGSKDVAPRV--L-F---DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (595)
Q Consensus 325 ~L~~~d~~~~~~~~~~--l-~---~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~ 384 (595)
.|..+...|- .... | + +..+.. +.|+.|+..|++...+ ..++|.+
T Consensus 282 ~VvFfErNGL--rhgeF~l~~~~~~~~v~~---------l~Wn~ds~iLAv~~~~----~vqLWt~ 332 (928)
T PF04762_consen 282 DVVFFERNGL--RHGEFTLRFDPEEEKVIE---------LAWNSDSEILAVWLED----RVQLWTR 332 (928)
T ss_pred EEEEEecCCc--EeeeEecCCCCCCceeeE---------EEECCCCCEEEEEecC----CceEEEe
Confidence 6767766652 1111 1 1 111222 8999999998886632 4566644
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.20 E-value=0.095 Score=50.21 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=48.2
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEEC-CCC---ceEecccC
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA-ETG---EAKPLFES 80 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~-~~g---~~~~lt~~ 80 (595)
++|-|++|+ +.-..-|-+ .--.....+.||||+.||...-. ....+|-.=. +.| +..+++..
T Consensus 209 t~i~lw~lk----Gq~L~~idt--nq~~n~~aavSP~GRFia~~gFT--------pDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 209 TKICLWDLK----GQLLQSIDT--NQSSNYDAAVSPDGRFIAVSGFT--------PDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred CcEEEEecC----Cceeeeecc--ccccccceeeCCCCcEEEEecCC--------CCceEEEEEeccCcchhhhhhhhee
Confidence 467778776 433333321 11135578999999998876543 1233443211 233 34555444
Q ss_pred CCccccccccceEEecCCcEEEEEe
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
++. ...+.++.|||++++++-.+
T Consensus 275 kGH--~saV~~~aFsn~S~r~vtvS 297 (420)
T KOG2096|consen 275 KGH--QSAVLAAAFSNSSTRAVTVS 297 (420)
T ss_pred ccc--hhheeeeeeCCCcceeEEEe
Confidence 431 11345889999999987764
No 132
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.19 E-value=1.3 Score=50.67 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=44.8
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.|.|+|+. +++. ..+.. ....+....|+| ||..|+-.+. ...|.++|+.++..........
T Consensus 556 ~v~lWd~~----~~~~~~~~~~--H~~~V~~l~~~p~~~~~L~Sgs~----------Dg~v~iWd~~~~~~~~~~~~~~- 618 (793)
T PLN00181 556 VVQVWDVA----RSQLVTEMKE--HEKRVWSIDYSSADPTLLASGSD----------DGSVKLWSINQGVSIGTIKTKA- 618 (793)
T ss_pred eEEEEECC----CCeEEEEecC--CCCCEEEEEEcCCCCCEEEEEcC----------CCEEEEEECCCCcEEEEEecCC-
Confidence 46677876 4433 33332 223578899997 6776554432 2456677887776433222221
Q ss_pred cccccccceEEe-cCCcEEEEE
Q 007620 84 CLNAVFGSFVWV-NNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Ws-pdg~~l~~~ 104 (595)
.+..+.|+ ++|..|+..
T Consensus 619 ----~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 619 ----NICCVQFPSESGRSLAFG 636 (793)
T ss_pred ----CeEEEEEeCCCCCEEEEE
Confidence 34567785 567777764
No 133
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.19 E-value=0.07 Score=51.98 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=51.4
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEE-EECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI-ADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v-~d~~~g~~~~lt~~~~~ 83 (595)
+.|-|.|.. +|.-.+|.- ...+.++..+|||||.+|.. +.. +..-.||- -...+.+ +.++...
T Consensus 218 ssi~iWdpd----tg~~~pL~~-~glgg~slLkwSPdgd~lfa-At~-------davfrlw~e~q~wt~e-rw~lgsg-- 281 (445)
T KOG2139|consen 218 SSIMIWDPD----TGQKIPLIP-KGLGGFSLLKWSPDGDVLFA-ATC-------DAVFRLWQENQSWTKE-RWILGSG-- 281 (445)
T ss_pred ceEEEEcCC----CCCcccccc-cCCCceeeEEEcCCCCEEEE-ecc-------cceeeeehhcccceec-ceeccCC--
Confidence 456777776 777667752 23336889999999997644 433 44566772 2222333 3332211
Q ss_pred cccccccceEEecCCcEEEEEec
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
.+....|+|+|+.|+|+..
T Consensus 282 ----rvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 282 ----RVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ----ceeeeeecCCCCEEEEEEc
Confidence 4567899999999999743
No 134
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.11 E-value=0.93 Score=45.11 Aligned_cols=42 Identities=10% Similarity=0.294 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCCCCCcEEEee-cccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 323 QTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
...+|++|.++ -+|-...+ -.+. .+.+ .+|++||..+++++.
T Consensus 320 ~~svyvydtq~--~~P~~~v~nihy~-~iTD-----iaws~dg~~l~vSS~ 362 (434)
T KOG1009|consen 320 KNSVYVYDTQT--LEPLAVVDNIHYS-AITD-----IAWSDDGSVLLVSST 362 (434)
T ss_pred cceEEEecccc--ccceEEEeeeeee-eecc-----eeecCCCcEEEEecc
Confidence 44789998776 33433322 1111 1222 899999999888764
No 135
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=96.11 E-value=1.4 Score=42.26 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=38.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc--eEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|+|||..+|-.. ...+|+++++.+-. .-.+...+. -+..+.|..|+..|+..
T Consensus 49 eI~~~~F~P~gs~~aSgG----------~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGG----------SDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSC 108 (338)
T ss_pred eEEEEEECCCCCeEeecC----------CcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEe
Confidence 577889999999765432 34678888875432 222222222 35689999999988775
No 136
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.00 E-value=0.097 Score=54.57 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=39.2
Q ss_pred eEEEecCCCCC--CCCceeeecCCCCCcccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceE
Q 007620 7 IGIHRLLPDDS--LGPEKEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (595)
Q Consensus 7 ~~~~~~~~~~~--~g~~~~lt~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (595)
|.|++|..+++ +|. +-++..+..+....|.| |-++||.... ++.-+||.+...++...
T Consensus 605 iai~el~~PGrLPDgv---~p~l~Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPDGV---MPGLFNGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPEN 665 (1012)
T ss_pred EEEEEcCCCCCCCccc---ccccccCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcc
Confidence 66777764333 222 22234555788999999 8999998764 56789999987665533
No 137
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.84 E-value=0.48 Score=54.49 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=45.6
Q ss_pred eEEEEcCCCCeeecCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCc
Q 007620 158 QLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (595)
Q Consensus 158 ~l~~~d~~g~~~~lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~ 235 (595)
.+-+++.+|+..-..++ +....++|.|.|..|+.+.. .+. ..+|..+..+|-+..+..-....++
T Consensus 238 ~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~---------~~~VvFfErNGLrhgeF~l~~~~~~--- 304 (928)
T PF04762_consen 238 VIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPD---------RHDVVFFERNGLRHGEFTLRFDPEE--- 304 (928)
T ss_pred EEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEE-cCC---------CcEEEEEecCCcEeeeEecCCCCCC---
Confidence 45556666665544433 24457899999999988864 221 2366667777765544321100000
Q ss_pred cccccccCCCCceeecCCCe
Q 007620 236 CYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~ 255 (595)
.....+.|++|+.-
T Consensus 305 ------~~v~~l~Wn~ds~i 318 (928)
T PF04762_consen 305 ------EKVIELAWNSDSEI 318 (928)
T ss_pred ------ceeeEEEECCCCCE
Confidence 11346899999873
No 138
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.83 E-value=0.29 Score=49.63 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=70.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCC-CceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.++..+|.|-.-+|...... ...|+++++-+ +...+.+..- +..+..+.|+++|+.++-...+
T Consensus 216 gvsai~~fp~~~hLlLS~gm---------D~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGM---------DGLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred ccchhhhccceeeEEEecCC---------CceEEEEEEecCcceehhhhcc----hhhhhhhhccccCCeeeeeecc---
Confidence 48899999954466554432 35666667654 4433332111 2357799999999987664221
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCCCCeeeeeEECCCCCe
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKY 188 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~~~~~~~~~~SpDg~~ 188 (595)
..|-.+|+ +|+ ...+..+.....+.+.||+..
T Consensus 280 ----------------------------------------------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n 313 (503)
T KOG0282|consen 280 ----------------------------------------------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQN 313 (503)
T ss_pred ----------------------------------------------eeeeeeccccceEEEEEecCCCceeeecCCCCCc
Confidence 11233455 553 333444444457889999987
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
++++... ...|..||+.++++
T Consensus 314 ~fl~G~s------------d~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 314 IFLVGGS------------DKKIRQWDIRSGKV 334 (503)
T ss_pred EEEEecC------------CCcEEEEeccchHH
Confidence 8777643 34788999887664
No 139
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=95.69 E-value=0.91 Score=42.73 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=50.9
Q ss_pred EEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECC-------CCce-Eeccc
Q 007620 8 GIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-------TGEA-KPLFE 79 (595)
Q Consensus 8 ~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-------~g~~-~~lt~ 79 (595)
-|+|++ +|+..-.. ..+..+....||++|++++++..... ....-|.+.++. +.++ ..|..
T Consensus 77 kLWDv~----tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~m-----g~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 77 KLWDVE----TGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQM-----GYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred EEEEcC----CCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhc-----CcceEEEEEEccCChhhhcccCceEEecC
Confidence 466776 66554333 34445888899999999999875421 234567777776 3332 22221
Q ss_pred CCCccccccccceEEecCCcEEEEE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
... .+....|+|-++.|+..
T Consensus 146 ~~s-----kit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 146 PDS-----KITSALWGPLGETIIAG 165 (327)
T ss_pred Ccc-----ceeeeeecccCCEEEEe
Confidence 111 45678899999987774
No 140
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.49 Score=45.44 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=59.3
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
++....|++||.+|+-.+.+ ..+-+|+..+.+.-.-. .|..++.|+ ......|-...
T Consensus 350 yvn~a~ft~dG~~iisaSsD-------------gtvkvW~~KtteC~~Tf-k~~~~d~~v---------nsv~~~PKnpe 406 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSD-------------GTVKVWHGKTTECLSTF-KPLGTDYPV---------NSVILLPKNPE 406 (508)
T ss_pred cccceEEcCCCCeEEEecCC-------------ccEEEecCcchhhhhhc-cCCCCcccc---------eeEEEcCCCCc
Confidence 55678999999999877643 25677887654332111 011111111 01111122211
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc---cCccccceeecCCCcEEEEEEeecccceEEEEEeCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~ 332 (595)
.+... +..+.+|+.+. .|.-.+.+.. ..+.+-+...||.|.+++... +++ .||-+...
T Consensus 407 h~iVC------------Nrsntv~imn~---qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--ED~--vlYCF~~~ 467 (508)
T KOG0275|consen 407 HFIVC------------NRSNTVYIMNM---QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--EDG--VLYCFSVL 467 (508)
T ss_pred eEEEE------------cCCCeEEEEec---cceEEeeeccCCccCCceEEEEecCCCcEEEEEc--cCc--EEEEEEee
Confidence 11111 11235666564 4422333332 235566778899999766542 223 68888776
Q ss_pred CC
Q 007620 333 SK 334 (595)
Q Consensus 333 ~~ 334 (595)
++
T Consensus 468 sG 469 (508)
T KOG0275|consen 468 SG 469 (508)
T ss_pred cC
Confidence 64
No 141
>PRK13604 luxD acyl transferase; Provisional
Probab=95.63 E-value=0.026 Score=55.44 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=39.8
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCC
Q 007620 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (595)
Q Consensus 486 ~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~ 563 (595)
..+.+||.+|.||+..|.+-+. + |.|+||.+|+- ++...+ +...+.+|+++||+|+. +|
T Consensus 13 ~~~~~dG~~L~Gwl~~P~~~~~-~--~~~~vIi~HGf------------~~~~~~---~~~~A~~La~~G~~vLr-fD 71 (307)
T PRK13604 13 VICLENGQSIRVWETLPKENSP-K--KNNTILIASGF------------ARRMDH---FAGLAEYLSSNGFHVIR-YD 71 (307)
T ss_pred eEEcCCCCEEEEEEEcCcccCC-C--CCCEEEEeCCC------------CCChHH---HHHHHHHHHHCCCEEEE-ec
Confidence 4567899999999999975332 2 33888887641 222111 11235799999999998 55
No 142
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=95.57 E-value=0.068 Score=59.04 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=37.3
Q ss_pred CEEEEEEecccccccCCCceEEEEEECCCCceEec-ccCCCccccccccceEEecCCcEEEE
Q 007620 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l-t~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+|||+... ..+|.++|.++..++.| +.... .+-.+.|||||+.|+|
T Consensus 319 tkiAfv~~~---------~~~L~~~D~dG~n~~~ve~~~~~-----~i~sP~~SPDG~~vAY 366 (912)
T TIGR02171 319 AKLAFRNDV---------TGNLAYIDYTKGASRAVEIEDTI-----SVYHPDISPDGKKVAF 366 (912)
T ss_pred eeEEEEEcC---------CCeEEEEecCCCCceEEEecCCC-----ceecCcCCCCCCEEEE
Confidence 478888742 23999999999888887 65544 4568999999999999
No 143
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.47 E-value=0.18 Score=52.67 Aligned_cols=85 Identities=21% Similarity=0.397 Sum_probs=56.9
Q ss_pred ceeeeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 3 FFTGIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
|..-|-|+||+ +++. -.+.++.. ++....|||||+++|-+.. ...|.++....++ .+|....
T Consensus 698 yd~Ti~lWDl~----~~~~~~~l~gHtd--qIf~~AWSpdGr~~AtVcK----------Dg~~rVy~Prs~e-~pv~Eg~ 760 (1012)
T KOG1445|consen 698 YDSTIELWDLA----NAKLYSRLVGHTD--QIFGIAWSPDGRRIATVCK----------DGTLRVYEPRSRE-QPVYEGK 760 (1012)
T ss_pred ccceeeeeehh----hhhhhheeccCcC--ceeEEEECCCCcceeeeec----------CceEEEeCCCCCC-CccccCC
Confidence 45567788998 4544 35554443 5889999999999999875 2568888887665 3343222
Q ss_pred CccccccccceEEecCCcEEEEEe
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
. ..++.-..+.|.=||+.|+++.
T Consensus 761 g-pvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 761 G-PVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred C-CccCcceeEEEEecCcEEEEec
Confidence 1 1122223788999999988863
No 144
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.46 E-value=2.9 Score=41.02 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=52.1
Q ss_pred eEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 7 IGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
+++.|.. +|+.. .++.-+..-...+.+|||||++| |++..+-+ .+..-|-|+|+. ...+++-..+...+
T Consensus 30 ~~v~D~~----~g~~~~~~~a~~gRHFyGHg~fs~dG~~L-ytTEnd~~----~g~G~IgVyd~~-~~~~ri~E~~s~GI 99 (305)
T PF07433_consen 30 ALVFDCR----TGQLLQRLWAPPGRHFYGHGVFSPDGRLL-YTTENDYE----TGRGVIGVYDAA-RGYRRIGEFPSHGI 99 (305)
T ss_pred EEEEEcC----CCceeeEEcCCCCCEEecCEEEcCCCCEE-EEeccccC----CCcEEEEEEECc-CCcEEEeEecCCCc
Confidence 3445665 66555 44432222256689999999876 55543322 456778899987 33445533333211
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
+...+.|.|||+.|++.
T Consensus 100 --GPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 100 --GPHELLLMPDGETLVVA 116 (305)
T ss_pred --ChhhEEEcCCCCEEEEE
Confidence 23388999999888875
No 145
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.36 E-value=1.9 Score=46.81 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=45.1
Q ss_pred cceEEEEcCCCCeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCc
Q 007620 156 TAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (595)
Q Consensus 156 ~~~l~~~d~~g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~ 235 (595)
+.+||.+..+.-++.....++++.++|.|-...-+++..- ..++-+|++-..++-.-++..
T Consensus 391 TVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL------------D~KvRiWsI~d~~Vv~W~Dl~------- 451 (712)
T KOG0283|consen 391 TVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL------------DGKVRLWSISDKKVVDWNDLR------- 451 (712)
T ss_pred cEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc------------ccceEEeecCcCeeEeehhhh-------
Confidence 3455544433345555667788899999965544444321 346778887766554433331
Q ss_pred cccccccCCCCceeecCCCeeE
Q 007620 236 CYNSVREGMRSISWRADKPSTL 257 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l 257 (595)
.-...+.++|||++.|
T Consensus 452 ------~lITAvcy~PdGk~av 467 (712)
T KOG0283|consen 452 ------DLITAVCYSPDGKGAV 467 (712)
T ss_pred ------hhheeEEeccCCceEE
Confidence 1134578899998644
No 146
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.26 E-value=1.1 Score=43.12 Aligned_cols=119 Identities=11% Similarity=0.223 Sum_probs=61.5
Q ss_pred CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeec
Q 007620 172 GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (595)
Q Consensus 172 t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp 251 (595)
.+-..+..++|.|.|.+|++.+.+ | .+.+||+++-....-+. |.. .+........+++
T Consensus 214 qd~~~vrsiSfHPsGefllvgTdH-p------------~~rlYdv~T~Qcfvsan-Pd~--------qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 214 QDTEPVRSISFHPSGEFLLVGTDH-P------------TLRLYDVNTYQCFVSAN-PDD--------QHTGAITQVRYSS 271 (430)
T ss_pred hccceeeeEeecCCCceEEEecCC-C------------ceeEEeccceeEeeecC-ccc--------ccccceeEEEecC
Confidence 333456789999999999988643 3 46677877654433221 210 0111223567787
Q ss_pred CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc--cCccccceeecCCCcEEEEEEeecccceEEEEE
Q 007620 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~ 329 (595)
.|+ ||.....| ..+.+||- ..+.=.+.+.+ ....+..+.|+.+|+.+.... .+....||.+
T Consensus 272 t~~--lYvTaSkD-----------G~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG--~DS~vkLWEi 334 (430)
T KOG0640|consen 272 TGS--LYVTASKD-----------GAIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG--KDSTVKLWEI 334 (430)
T ss_pred Ccc--EEEEeccC-----------CcEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC--Ccceeeeeee
Confidence 776 55442222 23444441 11100111111 122456788999999876542 2233356655
No 147
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=95.25 E-value=0.041 Score=35.71 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=23.6
Q ss_pred eccccCccccceeecCCCcEEEEEEeec-ccceEEEE
Q 007620 293 ILHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWL 328 (595)
Q Consensus 293 ~l~~~~~~~~~~~wspDg~~l~~~~~~~-~~~~~L~~ 328 (595)
+++...+....+.|||||+.|+|.+... .+..+||+
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 4455555677899999999988876433 25567764
No 148
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=95.12 E-value=0.051 Score=54.99 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=48.4
Q ss_pred CCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCC-chhHHHhccCeE
Q 007620 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFA 557 (595)
Q Consensus 479 ~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~-~~~q~la~~GY~ 557 (595)
.++.+...|++.||.+|+++.+.|.+-.+ +.|+||++|+ ..... .+.+ ...+.|+++||.
T Consensus 29 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~----~~~~VvllHG--------------~~~~~-~~~~~~~~~~L~~~Gy~ 89 (330)
T PLN02298 29 GIKGSKSFFTSPRGLSLFTRSWLPSSSSP----PRALIFMVHG--------------YGNDI-SWTFQSTAIFLAQMGFA 89 (330)
T ss_pred CCccccceEEcCCCCEEEEEEEecCCCCC----CceEEEEEcC--------------CCCCc-ceehhHHHHHHHhCCCE
Confidence 34667778899999999999998865211 3388998764 21111 1111 124578899999
Q ss_pred EEeCCCCceeec
Q 007620 558 VLAGPSIPIIGE 569 (595)
Q Consensus 558 Vl~~~~~~~~~~ 569 (595)
|+. +|.|..|.
T Consensus 90 V~~-~D~rGhG~ 100 (330)
T PLN02298 90 CFA-LDLEGHGR 100 (330)
T ss_pred EEE-ecCCCCCC
Confidence 999 88888775
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.11 E-value=0.62 Score=47.53 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=51.9
Q ss_pred ceeeeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccC
Q 007620 3 FFTGIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFES 80 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~ 80 (595)
+.+.|-|+||.- .+-.. -++| ...........|||.+ |+|..-. ..+|-++|+.... .+++-..
T Consensus 485 eastlsiWDLAa--pTprikaelt--ssapaCyALa~spDak-vcFsccs---------dGnI~vwDLhnq~~VrqfqGh 550 (705)
T KOG0639|consen 485 EASTLSIWDLAA--PTPRIKAELT--SSAPACYALAISPDAK-VCFSCCS---------DGNIAVWDLHNQTLVRQFQGH 550 (705)
T ss_pred ccceeeeeeccC--CCcchhhhcC--CcchhhhhhhcCCccc-eeeeecc---------CCcEEEEEcccceeeecccCC
Confidence 567888999972 11111 1333 2333566789999996 6786643 2567777887654 4555444
Q ss_pred CCccccccccceEEecCCcEEEE
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+ +.+.+..|+||..|.-
T Consensus 551 tD-----GascIdis~dGtklWT 568 (705)
T KOG0639|consen 551 TD-----GASCIDISKDGTKLWT 568 (705)
T ss_pred CC-----CceeEEecCCCceeec
Confidence 44 5678889999987643
No 150
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.10 E-value=0.27 Score=48.80 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=72.7
Q ss_pred CCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecC
Q 007620 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (595)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~ 107 (595)
+.+..+.....|+||..|.-.+ + ...|-++|+.+.+.++.+...........+...||||+++++-..
T Consensus 339 ~~gg~vtSl~ls~~g~~lLsss-R---------Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-- 406 (459)
T KOG0288|consen 339 PLGGRVTSLDLSMDGLELLSSS-R---------DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-- 406 (459)
T ss_pred ecCcceeeEeeccCCeEEeeec-C---------CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc--
Confidence 4555799999999999887664 3 245777899988888776544332233456788999999765531
Q ss_pred CCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee-ecCC---CCeeeeeEE
Q 007620 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGT---PAVYTAVEP 182 (595)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt~---~~~~~~~~~ 182 (595)
....||++++ +|+.. .|.. ...+..++|
T Consensus 407 -----------------------------------------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 407 -----------------------------------------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred -----------------------------------------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence 1245777888 55544 3322 224678999
Q ss_pred CCCCCeEEEEE
Q 007620 183 SPDQKYVLITS 193 (595)
Q Consensus 183 SpDg~~l~~~~ 193 (595)
+|-|+.++-..
T Consensus 440 ~~sG~~Llsad 450 (459)
T KOG0288|consen 440 NPSGSGLLSAD 450 (459)
T ss_pred cCCCchhhccc
Confidence 99999987664
No 151
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.08 E-value=1.2 Score=44.20 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=34.0
Q ss_pred cceEEEEcCCCCeeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC
Q 007620 156 TAQLVLGSLDGTAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 156 ~~~l~~~d~~g~~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
...||+++..|..+.+.... .-..++|||||+.++++-.. ...|+.++.+
T Consensus 142 ~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d 193 (307)
T COG3386 142 TGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLD 193 (307)
T ss_pred cceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecC
Confidence 35799999866555444332 33489999999988888543 2367777654
No 152
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=94.88 E-value=0.023 Score=58.01 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=41.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.+..|||||++||-++. + .-|-+.+..+.+..-+.+.-- ++.-.+.||||||+|+.-
T Consensus 292 ~in~f~FS~DG~~LA~VSq--------D--GfLRvF~fdt~eLlg~mkSYF----GGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ--------D--GFLRIFDFDTQELLGVMKSYF----GGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccceeEcCCCceEEEEec--------C--ceEEEeeccHHHHHHHHHhhc----cceEEEEEcCCccEEEec
Confidence 5788899999999999985 2 345556776666555533211 134477999999998774
No 153
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=94.88 E-value=0.27 Score=48.82 Aligned_cols=142 Identities=12% Similarity=0.176 Sum_probs=76.5
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
.++..+||++|.+++-.. .. ..|-+|+..-..++.+... ..+..+.+++||....
T Consensus 140 ~Vr~m~ws~~g~wmiSgD-~g------------G~iKyWqpnmnnVk~~~ah------------h~eaIRdlafSpnDsk 194 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGD-KG------------GMIKYWQPNMNNVKIIQAH------------HAEAIRDLAFSPNDSK 194 (464)
T ss_pred cceeEEEccCCCEEEEcC-CC------------ceEEecccchhhhHHhhHh------------hhhhhheeccCCCCce
Confidence 456889999999876442 21 2455565554433332211 1123466777775432
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~ 335 (595)
|+.+.|. ..+.+||. ....+.+.|....+.+..+.|.|.-..++... ++. -+-+.|..+++
T Consensus 195 ---F~t~SdD----------g~ikiWdf--~~~kee~vL~GHgwdVksvdWHP~kgLiasgs--kDn--lVKlWDprSg~ 255 (464)
T KOG0284|consen 195 ---FLTCSDD----------GTIKIWDF--RMPKEERVLRGHGWDVKSVDWHPTKGLIASGS--KDN--LVKLWDPRSGS 255 (464)
T ss_pred ---eEEecCC----------CeEEEEec--cCCchhheeccCCCCcceeccCCccceeEEcc--CCc--eeEeecCCCcc
Confidence 4444332 34555553 22334556666667788999999754444432 122 34456877741
Q ss_pred CCcEEE--eecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 336 VAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 336 ~~~~~l--~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
..-.| ....+-. +.|+++|.+|+...
T Consensus 256 -cl~tlh~HKntVl~---------~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 256 -CLATLHGHKNTVLA---------VKFNPNGNWLLTGS 283 (464)
T ss_pred -hhhhhhhccceEEE---------EEEcCCCCeeEEcc
Confidence 11111 1222333 78899998776654
No 154
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=94.87 E-value=0.052 Score=59.11 Aligned_cols=64 Identities=27% Similarity=0.450 Sum_probs=41.8
Q ss_pred ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCc-ccCCCCchhHHHhccCeEEEeCCCCce
Q 007620 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 488 ~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
+.+||.+|.+.+++|.+ . + +.|+||++||- +.... .........++|+++||+|+. ++...
T Consensus 2 ~~~DG~~L~~~~~~P~~-~--~--~~P~Il~~~gy------------g~~~~~~~~~~~~~~~~l~~~Gy~vv~-~D~RG 63 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-G--G--PVPVILSRTPY------------GKDAGLRWGLDKTEPAWFVAQGYAVVI-QDTRG 63 (550)
T ss_pred cCCCCCEEEEEEEecCC-C--C--CCCEEEEecCC------------CCchhhccccccccHHHHHhCCcEEEE-Eeccc
Confidence 46899999999999975 1 2 45999997742 11100 000111234789999999999 66665
Q ss_pred eec
Q 007620 567 IGE 569 (595)
Q Consensus 567 ~~~ 569 (595)
.|.
T Consensus 64 ~g~ 66 (550)
T TIGR00976 64 RGA 66 (550)
T ss_pred ccc
Confidence 554
No 155
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.83 E-value=1.3 Score=47.70 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=36.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC---CCCceEecccCCC---ccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGEAKPLFESPD---ICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~~~~lt~~~~---~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+.+||++..+-.+. +..-.+|-..+ ..|..+.+....+ ..+...+.....||||+.|++.
T Consensus 456 aIWsi~~~pD~~g~vT~sa--------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSA--------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred ceeeeeecCCCCceEEecC--------CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 4777899999998766543 34445553221 2233222111111 0111145688999999999885
No 156
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.58 E-value=3.8 Score=44.20 Aligned_cols=146 Identities=15% Similarity=0.095 Sum_probs=73.8
Q ss_pred eEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCC-CC-C
Q 007620 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR-RD-P 112 (595)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~-~~-~ 112 (595)
.-++|||+.|. ..+ +..+-+-++|.++.+. .+|.- .. ......+++||++++++..... +. +
T Consensus 198 ~PlpnDGk~l~-~~~--------ey~~~vSvID~etmeV~~qV~V-dg-----npd~v~~spdGk~afvTsyNsE~G~tl 262 (635)
T PRK02888 198 IPLPNDGKDLD-DPK--------KYRSLFTAVDAETMEVAWQVMV-DG-----NLDNVDTDYDGKYAFSTCYNSEEGVTL 262 (635)
T ss_pred cccCCCCCEee-ccc--------ceeEEEEEEECccceEEEEEEe-CC-----CcccceECCCCCEEEEeccCcccCcce
Confidence 34677887552 221 3456778889887653 23211 11 3356789999999888753211 11 0
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-C----C-C-eeecCCCCeeeeeEECCC
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D----G-T-AKDFGTPAVYTAVEPSPD 185 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~----g-~-~~~lt~~~~~~~~~~SpD 185 (595)
... ...+......-. ........ .++. +.+....++-++|. + + + ...|..+.....+.+|||
T Consensus 263 ~em-~a~e~d~~vvfn------i~~iea~v---kdGK-~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD 331 (635)
T PRK02888 263 AEM-MAAERDWVVVFN------IARIEEAV---KAGK-FKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD 331 (635)
T ss_pred eee-ccccCceEEEEc------hHHHHHhh---hCCC-EEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCC
Confidence 000 000000000000 00000000 1111 22223456888887 4 2 2 233445555678999999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCc
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 219 (595)
|++++++.... ..+.++|++..
T Consensus 332 GkylyVanklS------------~tVSVIDv~k~ 353 (635)
T PRK02888 332 GKYFIANGKLS------------PTVTVIDVRKL 353 (635)
T ss_pred CCEEEEeCCCC------------CcEEEEEChhh
Confidence 99998885433 36778887653
No 157
>PLN02442 S-formylglutathione hydrolase
Probab=94.22 E-value=0.11 Score=51.37 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=44.7
Q ss_pred ceEEEEEEC-CCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~-~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
..+.+++.+ .=|.++...+|+|+. .+++++ |+|++.|+.. +.+..|.... .-.++++.+||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~~~--Pvv~~lHG~~-----------~~~~~~~~~~-~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA-SDSGKV--PVLYWLSGLT-----------CTDENFIQKS-GAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc-ccCCCC--CEEEEecCCC-----------cChHHHHHhh-hHHHHHhhcCeEEE
Confidence 566666766 467899999999994 444545 9999987421 1122221111 11357778899999
Q ss_pred eCCCCce
Q 007620 560 AGPSIPI 566 (595)
Q Consensus 560 ~~~~~~~ 566 (595)
. |+.+.
T Consensus 82 ~-pd~~~ 87 (283)
T PLN02442 82 A-PDTSP 87 (283)
T ss_pred e-cCCCC
Confidence 9 77654
No 158
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.11 E-value=0.44 Score=46.01 Aligned_cols=110 Identities=11% Similarity=0.177 Sum_probs=73.0
Q ss_pred eeeecCCCCC-cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 22 KEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 22 ~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
++.|+++... .+...+||+|..++|-... +.-+.||+.|+..-+...+.-..+ .+..+.|.|.-.+
T Consensus 309 kp~tD~pnPk~g~g~lafs~Ds~y~aTrnd--------~~PnalW~Wdlq~l~l~avLiQk~-----piraf~WdP~~pr 375 (447)
T KOG4497|consen 309 KPPTDFPNPKCGAGKLAFSCDSTYAATRND--------KYPNALWLWDLQNLKLHAVLIQKH-----PIRAFEWDPGRPR 375 (447)
T ss_pred cCCCCCCCcccccceeeecCCceEEeeecC--------CCCceEEEEechhhhhhhhhhhcc-----ceeEEEeCCCCce
Confidence 4455544432 4678899999987654322 456889999997666555443333 5678999998887
Q ss_pred EEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCCCC-eee
Q 007620 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA-VYT 178 (595)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~~-~~~ 178 (595)
|+... | .++||...++| ....+..++ .+.
T Consensus 376 L~vct------------------------g-------------------------~srLY~W~psg~~~V~vP~~GF~i~ 406 (447)
T KOG4497|consen 376 LVVCT------------------------G-------------------------KSRLYFWAPSGPRVVGVPKKGFNIQ 406 (447)
T ss_pred EEEEc------------------------C-------------------------CceEEEEcCCCceEEecCCCCceee
Confidence 77741 1 24677777777 233444444 345
Q ss_pred eeEECCCCCeEEEEE
Q 007620 179 AVEPSPDQKYVLITS 193 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~ 193 (595)
.+.|.-+|..|+...
T Consensus 407 ~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 407 KLQWLQPGEFIVLCG 421 (447)
T ss_pred eEEecCCCcEEEEEc
Confidence 889999999987764
No 159
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.91 E-value=7.4 Score=38.66 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=30.1
Q ss_pred eEEeccCCCCCCCCceecccc-CccccceeecCCCcEEEEEEeecccceEEEEEeCC
Q 007620 277 IIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (595)
Q Consensus 277 ~~~~~d~~~~~g~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~ 332 (595)
.+|.++. .| ....+... -.....++||||++.+++.. +...+||.++++
T Consensus 144 ~lyr~~p---~g-~~~~l~~~~~~~~NGla~SpDg~tly~aD---T~~~~i~r~~~d 193 (307)
T COG3386 144 SLYRVDP---DG-GVVRLLDDDLTIPNGLAFSPDGKTLYVAD---TPANRIHRYDLD 193 (307)
T ss_pred eEEEEcC---CC-CEEEeecCcEEecCceEECCCCCEEEEEe---CCCCeEEEEecC
Confidence 5676673 33 44443333 33345689999998766543 233478888876
No 160
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.90 E-value=6.9 Score=40.12 Aligned_cols=222 Identities=12% Similarity=0.111 Sum_probs=114.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|=-||+.+|.- +....+-++|.++..+.+.....+. .+....|+|++..++....+
T Consensus 70 ~v~s~~fR~DG~LlaaG----------D~sG~V~vfD~k~r~iLR~~~ah~a----pv~~~~f~~~d~t~l~s~sD---- 131 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAG----------DESGHVKVFDMKSRVILRQLYAHQA----PVHVTKFSPQDNTMLVSGSD---- 131 (487)
T ss_pred ceeEEEeecCCeEEEcc----------CCcCcEEEeccccHHHHHHHhhccC----ceeEEEecccCCeEEEecCC----
Confidence 47788888999876553 2334555667655333333222221 45577889888766665221
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeee--c-CCCCeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKD--F-GTPAVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--l-t~~~~~~~~~~SpDg~~ 188 (595)
++ ..++ +|+++...+ | +..+++...+|+|-..+
T Consensus 132 ------------------d~------------------------v~k~--~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 132 ------------------DK------------------------VVKY--WDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred ------------------Cc------------------------eEEE--EEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 10 1112 223221112 2 23457788999999999
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCC--ceEEEecc-CCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCD-LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|+++..- ...+-+||+.. .....+.. .|. ...-.-|.|.. |+.
T Consensus 168 ivvtGsY------------Dg~vrl~DtR~~~~~v~elnhg~pV---------------e~vl~lpsgs~-ias------ 213 (487)
T KOG0310|consen 168 IVVTGSY------------DGKVRLWDTRSLTSRVVELNHGCPV---------------ESVLALPSGSL-IAS------ 213 (487)
T ss_pred EEEecCC------------CceEEEEEeccCCceeEEecCCCce---------------eeEEEcCCCCE-EEE------
Confidence 9988643 34677788653 33444422 211 12333344441 211
Q ss_pred CCcccccCCcceEEeccCCCCCCCCceec-cccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeec
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~l-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~ 344 (595)
.....+.+||+ .+|++.... ....-.+++..+..|+..|+...- ++ ++-++|.+. -+.+...
T Consensus 214 -------AgGn~vkVWDl--~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL--D~--~VKVfd~t~----~Kvv~s~ 276 (487)
T KOG0310|consen 214 -------AGGNSVKVWDL--TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL--DR--HVKVFDTTN----YKVVHSW 276 (487)
T ss_pred -------cCCCeEEEEEe--cCCceehhhhhcccceEEEEEeecCCceEeeccc--cc--ceEEEEccc----eEEEEee
Confidence 22345677786 234332221 112234567777777777666532 23 444455433 3444333
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 345 VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.+...+ .....+||++.+++.-
T Consensus 277 ~~~~pv-----Lsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 277 KYPGPV-----LSIAVSPDDQTVVIGM 298 (487)
T ss_pred ecccce-----eeEEecCCCceEEEec
Confidence 222211 1167788888887654
No 161
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=93.82 E-value=0.39 Score=49.39 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=13.4
Q ss_pred eeeEECCCCCeEEEEE
Q 007620 178 TAVEPSPDQKYVLITS 193 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~ 193 (595)
.-++||||||+|+.-.
T Consensus 336 LCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGG 351 (636)
T ss_pred EEEEEcCCccEEEecC
Confidence 3679999999998764
No 162
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=93.78 E-value=0.057 Score=54.96 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=42.8
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCC-chhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~-~~~q~la~~GY~Vl 559 (595)
..|.+.++= +|.+|.|+|.+|.+ ++ |.|+||.+ ||...+..-.+ ....+|+.+|+++|
T Consensus 164 ~i~~v~iP~-eg~~I~g~LhlP~~---~~--p~P~VIv~---------------gGlDs~qeD~~~l~~~~l~~rGiA~L 222 (411)
T PF06500_consen 164 PIEEVEIPF-EGKTIPGYLHLPSG---EK--PYPTVIVC---------------GGLDSLQEDLYRLFRDYLAPRGIAML 222 (411)
T ss_dssp EEEEEEEEE-TTCEEEEEEEESSS---SS---EEEEEEE-----------------TTS-GGGGHHHHHCCCHHCT-EEE
T ss_pred CcEEEEEee-CCcEEEEEEEcCCC---CC--CCCEEEEe---------------CCcchhHHHHHHHHHHHHHhCCCEEE
Confidence 577778874 56999999999983 23 56999975 34343322211 22357899999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. -+||..|+
T Consensus 223 t-vDmPG~G~ 231 (411)
T PF06500_consen 223 T-VDMPGQGE 231 (411)
T ss_dssp E-E--TTSGG
T ss_pred E-EccCCCcc
Confidence 9 88898886
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=93.70 E-value=1.2 Score=45.59 Aligned_cols=137 Identities=11% Similarity=0.109 Sum_probs=84.6
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
+|-|+.++. +.+...++ .+.+..+...++||-.+.+.-++.. ...+.++|+.+..+.--....+
T Consensus 144 diiih~~~t---~~~tt~f~-~~sgqsvRll~ys~skr~lL~~asd---------~G~VtlwDv~g~sp~~~~~~~H--- 207 (673)
T KOG4378|consen 144 DIIIHGTKT---KQKTTTFT-IDSGQSVRLLRYSPSKRFLLSIASD---------KGAVTLWDVQGMSPIFHASEAH--- 207 (673)
T ss_pred cEEEEeccc---Ccccccee-cCCCCeEEEeecccccceeeEeecc---------CCeEEEEeccCCCcccchhhhc---
Confidence 567777772 44556666 4555566689999999988877642 3455666886655432211111
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
.+.-..+.++|....|+... | . ...|+++|..
T Consensus 208 sAP~~gicfspsne~l~vsV------------------------G---------------~---------Dkki~~yD~~ 239 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSV------------------------G---------------Y---------DKKINIYDIR 239 (673)
T ss_pred cCCcCcceecCCccceEEEe------------------------c---------------c---------cceEEEeecc
Confidence 12345788999988877752 1 1 1245666652
Q ss_pred -C-CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc
Q 007620 166 -G-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (595)
Q Consensus 166 -g-~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 219 (595)
. ....|+-..-...++|+++|.+|+....+ .+|+.||+.+.
T Consensus 240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~-------------G~~i~YD~R~~ 282 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNSK-------------GELIAYDMRST 282 (673)
T ss_pred cccccceeeecCCcceeeecCCceEEEeecCC-------------ceEEEEecccC
Confidence 2 23345444445688999999988766532 37888998743
No 164
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.65 E-value=0.13 Score=49.02 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=41.0
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeC
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~ 561 (595)
.+.+++.+.| .++.|++.+|.+-. +.|+||.+|+ +. |-+. ....-...||.+||+|+.
T Consensus 2 ~~~v~~~~~~-~~~~~~~a~P~~~~-----~~P~VIv~he-----------i~-Gl~~---~i~~~a~rlA~~Gy~v~~- 59 (236)
T COG0412 2 GTDVTIPAPD-GELPAYLARPAGAG-----GFPGVIVLHE-----------IF-GLNP---HIRDVARRLAKAGYVVLA- 59 (236)
T ss_pred CcceEeeCCC-ceEeEEEecCCcCC-----CCCEEEEEec-----------cc-CCch---HHHHHHHHHHhCCcEEEe-
Confidence 3567887766 89999999998732 2299998764 21 1111 111224799999999999
Q ss_pred CCC
Q 007620 562 PSI 564 (595)
Q Consensus 562 ~~~ 564 (595)
|++
T Consensus 60 Pdl 62 (236)
T COG0412 60 PDL 62 (236)
T ss_pred chh
Confidence 554
No 165
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.62 E-value=9.7 Score=39.07 Aligned_cols=195 Identities=11% Similarity=0.097 Sum_probs=104.1
Q ss_pred CcccceEEccCCC-EEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCccccccccceEEecCCcEEEEEecCC
Q 007620 31 AKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (595)
Q Consensus 31 ~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~ 108 (595)
..++..+|||.-- .+|.+++ .+.+|| +..+-..+ .+..... .+.+..+-.||++|+..-
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S---------~rvqly--~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD--- 87 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS---------VRVQLY--SSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGD--- 87 (487)
T ss_pred CcceeEecCCCCCCceEEecc---------cEEEEE--ecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccC---
Confidence 3588899999433 3455543 346666 44443332 2444444 456778889999876630
Q ss_pred CCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC--CeeecCC-CCeeeeeEECCC
Q 007620 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGT-PAVYTAVEPSPD 185 (595)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~lt~-~~~~~~~~~SpD 185 (595)
..+++-++|... ..+++-. ........|+|+
T Consensus 88 ----------------------------------------------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~ 121 (487)
T KOG0310|consen 88 ----------------------------------------------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ 121 (487)
T ss_pred ----------------------------------------------CcCcEEEeccccHHHHHHHhhccCceeEEEeccc
Confidence 023344455422 2233321 123456789999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
+..++.+..+. ..+-.||+.+..+ + .+....+ ..+|..+|+|-... +.+- +
T Consensus 122 d~t~l~s~sDd------------~v~k~~d~s~a~v-~-~~l~~ht----------DYVR~g~~~~~~~h-ivvt----G 172 (487)
T KOG0310|consen 122 DNTMLVSGSDD------------KVVKYWDLSTAYV-Q-AELSGHT----------DYVRCGDISPANDH-IVVT----G 172 (487)
T ss_pred CCeEEEecCCC------------ceEEEEEcCCcEE-E-EEecCCc----------ceeEeeccccCCCe-EEEe----c
Confidence 98888776543 2466778877765 2 1211111 12456677776553 3222 1
Q ss_pred CCcccccCCcceEEeccCCCCCCC-CceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
...+.+.+||. ... ....-.+.+..+..+.+.|.|..++... + +.+-++|+.++
T Consensus 173 -------sYDg~vrl~Dt---R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg----G-n~vkVWDl~~G 227 (487)
T KOG0310|consen 173 -------SYDGKVRLWDT---RSLTSRVVELNHGCPVESVLALPSGSLIASAG----G-NSVKVWDLTTG 227 (487)
T ss_pred -------CCCceEEEEEe---ccCCceeEEecCCCceeeEEEcCCCCEEEEcC----C-CeEEEEEecCC
Confidence 23345666665 211 1111123344566778888887776642 1 25666788754
No 166
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.61 E-value=2.3 Score=39.71 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=65.4
Q ss_pred CC-CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccC
Q 007620 165 DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (595)
Q Consensus 165 ~g-~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (595)
+| +++.|-.+..+.+...|+||+.|..+- . ..+--||...=..-.-.+ +|- .
T Consensus 174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia~-g-------------ssV~Fwdaksf~~lKs~k------~P~-------n 226 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPVTSLEVSQDGRILTIAY-G-------------SSVKFWDAKSFGLLKSYK------MPC-------N 226 (334)
T ss_pred cCcEEEEEecCCCCcceeeccCCCEEEEec-C-------------ceeEEeccccccceeecc------Ccc-------c
Confidence 55 344454444456889999999775542 1 234455554322211111 221 1
Q ss_pred CCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcEEEEEEeecc
Q 007620 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
+.+.+.+|+.. ++.. ++ ....+|.+|. ..|+..... ...+.+..+.|||||..++.. .++
T Consensus 227 V~SASL~P~k~--~fVa----Gg-------ed~~~~kfDy---~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG--SED 288 (334)
T KOG0278|consen 227 VESASLHPKKE--FFVA----GG-------EDFKVYKFDY---NTGEEIGSYNKGHFGPVHCVRFSPDGELYASG--SED 288 (334)
T ss_pred cccccccCCCc--eEEe----cC-------cceEEEEEec---cCCceeeecccCCCCceEEEEECCCCceeecc--CCC
Confidence 22345566653 3222 11 1124555664 334544443 234567889999999865554 345
Q ss_pred cceEEEEEeCC
Q 007620 322 SQTRTWLVCPG 332 (595)
Q Consensus 322 ~~~~L~~~d~~ 332 (595)
+..+||...+.
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 77789988654
No 167
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.41 E-value=0.31 Score=47.12 Aligned_cols=66 Identities=27% Similarity=0.434 Sum_probs=43.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECC---CCceEecccCCCcc--ccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPDIC--LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~---~g~~~~lt~~~~~~--~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...++||||.+||++... .+..+||+.-+. .|.++.++...... ....+..+.|++++++++..
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~-------~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVED-------GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred ceEEEEECCCCcEEEEEEec-------CCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 58899999999999999975 345778877543 34244443322111 11235589999999977665
No 168
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=1.3 Score=44.35 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=35.5
Q ss_pred CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCC
Q 007620 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNS 98 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg 98 (595)
..+....|||||+.||++.. . ...|+++.+|. ..+.|.... +.-+..++|+.|+
T Consensus 187 ~eV~DL~FS~dgk~lasig~---------d--~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASIGA---------D--SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDN 241 (398)
T ss_pred CccccceeCCCCcEEEEecC---------C--ceEEEEeccCchhhhcCCccc---chhhhhceecccC
Confidence 36889999999999999874 2 44455777774 333432221 1245688999776
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.19 E-value=4.2 Score=43.31 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=42.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.+.+|-|||..|...+ .+.|+++|+..|.. ..|-..++ -+-..+||.||++++..
T Consensus 14 ci~d~afkPDGsqL~lAA-----------g~rlliyD~ndG~llqtLKgHKD-----tVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----------GSRLLVYDTSDGTLLQPLKGHKD-----TVYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec-----------CCEEEEEeCCCcccccccccccc-----eEEEEEEccCCceeccC
Confidence 588999999999987754 37899999987764 33422232 35578999999987653
No 170
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.16 E-value=6.5 Score=42.90 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=34.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
.+-.+.||.++= | ..+.. +....|| ++...+...++...+ .+...+|.|-+..
T Consensus 371 DILDlSWSKn~f-L-LSSSM-------DKTVRLW--h~~~~~CL~~F~Hnd-----fVTcVaFnPvDDr 423 (712)
T KOG0283|consen 371 DILDLSWSKNNF-L-LSSSM-------DKTVRLW--HPGRKECLKVFSHND-----FVTCVAFNPVDDR 423 (712)
T ss_pred hheecccccCCe-e-Eeccc-------cccEEee--cCCCcceeeEEecCC-----eeEEEEecccCCC
Confidence 366789998872 2 33333 4567787 555666666665554 5778999986554
No 171
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=92.82 E-value=0.19 Score=53.28 Aligned_cols=64 Identities=30% Similarity=0.488 Sum_probs=39.0
Q ss_pred EEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchh--HHHhccCeEEEe
Q 007620 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS--LIFLARRFAVLA 560 (595)
Q Consensus 483 e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~--q~la~~GY~Vl~ 560 (595)
..+.++-+||.+|..-||+|.+- .|+|||+.-.-.||. .- .+ .+..+...-. ++||++||+|+.
T Consensus 20 ~~v~V~MRDGvrL~~dIy~Pa~~-----g~~Pvll~~~~~Py~------k~-~~--~~~~~~~~~p~~~~~aa~GYavV~ 85 (563)
T COG2936 20 RDVMVPMRDGVRLAADIYRPAGA-----GPLPVLLSRTRLPYR------KR-NG--TFGPQLSALPQPAWFAAQGYAVVN 85 (563)
T ss_pred eeeeEEecCCeEEEEEEEccCCC-----CCCceeEEeeccccc------cc-cc--cCcchhhcccccceeecCceEEEE
Confidence 34566779999999999999863 255888874311111 10 01 1111111112 499999999997
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=92.81 E-value=2.7 Score=40.64 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=45.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~ 84 (595)
.+.|+||.. -+-++-++.+.. .+...+||+||+.|.-.+ + ...+-++|+..|.+ +++- ...
T Consensus 46 ~vvI~D~~T---~~iar~lsaH~~--pi~sl~WS~dgr~LltsS-~---------D~si~lwDl~~gs~l~rir-f~s-- 107 (405)
T KOG1273|consen 46 RVVIYDFDT---FRIARMLSAHVR--PITSLCWSRDGRKLLTSS-R---------DWSIKLWDLLKGSPLKRIR-FDS-- 107 (405)
T ss_pred cEEEEEccc---cchhhhhhcccc--ceeEEEecCCCCEeeeec-C---------CceeEEEeccCCCceeEEE-ccC--
Confidence 477888873 444555554333 488999999999876554 3 24455568877763 3331 121
Q ss_pred ccccccceEEecCCcEE
Q 007620 85 LNAVFGSFVWVNNSTLL 101 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l 101 (595)
.+-...|.|-.+..
T Consensus 108 ---pv~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 108 ---PVWGAQWHPRKRNK 121 (405)
T ss_pred ---ccceeeeccccCCe
Confidence 34466777755433
No 173
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=92.78 E-value=0.31 Score=47.82 Aligned_cols=67 Identities=21% Similarity=0.420 Sum_probs=42.0
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC-CchhHHH-hccCeE
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIF-LARRFA 557 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~-~~~~q~l-a~~GY~ 557 (595)
+.+.+++++. -|.++...||+|++++. + +.|+||+.|+. +.....+. ....+.| +..||+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~-~--~~P~vvllHG~--------------~~~~~~~~~~~~~~~la~~~g~~ 74 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAAA-G--PVPVLWYLSGL--------------TCTHENFMIKAGAQRFAAEHGLA 74 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCccC-C--CCCEEEEccCC--------------CCCccHHHhhhHHHHHHhhcCcE
Confidence 5566667655 56889999999998654 3 34999997642 21111111 1123444 456999
Q ss_pred EEeCCCCc
Q 007620 558 VLAGPSIP 565 (595)
Q Consensus 558 Vl~~~~~~ 565 (595)
|++ |+.+
T Consensus 75 Vv~-Pd~~ 81 (275)
T TIGR02821 75 LVA-PDTS 81 (275)
T ss_pred EEE-eCCC
Confidence 999 7764
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=92.75 E-value=3 Score=42.82 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=70.5
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
..+-+.+||-.++++.+.... ..+.+||+.|.....-.... ...| .+.+.++|....
T Consensus 166 svRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~~~~~~--HsAP---------~~gicfspsne~ 222 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIFHASEA--HSAP---------CRGICFSPSNEA 222 (673)
T ss_pred eEEEeecccccceeeEeeccC------------CeEEEEeccCCCcccchhhh--ccCC---------cCcceecCCccc
Confidence 445788999989888876543 37889999987654322110 0111 245777777664
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.++-+ .....|+++|. ...........+..++.++|+++|..|+... .+.+|+.+|+.+.
T Consensus 223 l~vsV------------G~Dkki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~----s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 223 LLVSV------------GYDKKINIYDI---RSQASTDRLTYSHPLSTVAFSECGTYLCAGN----SKGELIAYDMRST 282 (673)
T ss_pred eEEEe------------cccceEEEeec---ccccccceeeecCCcceeeecCCceEEEeec----CCceEEEEecccC
Confidence 33322 33456777775 1111111112234467899999999887753 2348999999885
No 175
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=92.71 E-value=6.7 Score=37.26 Aligned_cols=140 Identities=13% Similarity=0.172 Sum_probs=71.8
Q ss_pred eeeeEECCC-CCeEEEEEcccCccccccCcccceeEEEEcCCC-ceEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 177 YTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 177 ~~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
...++|+|- |. |+.+... ...|-+|+..+ ......+-+. .+.+...|..+|+|.|+
T Consensus 17 ~W~~awhp~~g~-ilAscg~------------Dk~vriw~~~~~~s~~ck~vld---------~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 17 VWSVAWHPGKGV-ILASCGT------------DKAVRIWSTSSGDSWTCKTVLD---------DGHKRSVRSVAWSPHGR 74 (312)
T ss_pred EEEEEeccCCce-EEEeecC------------CceEEEEecCCCCcEEEEEecc---------ccchheeeeeeecCCCc
Confidence 457889997 65 3333322 23577777763 2221111110 12234467899999998
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceec---cccCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL---HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l---~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
. |+-..+ .....++.- .+++...+ -..+..+..++||++|..|+.-+.. + .+|+...
T Consensus 75 ~-La~aSF------------D~t~~Iw~k---~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD--K--SVWiWe~ 134 (312)
T KOG0645|consen 75 Y-LASASF------------DATVVIWKK---EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD--K--SVWIWEI 134 (312)
T ss_pred E-EEEeec------------cceEEEeec---CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC--C--eEEEEEe
Confidence 3 443321 122222221 12233332 2334457789999999988775422 2 5666665
Q ss_pred CCCCCCcEEE--eec---ccccccCCCCCCCeeeCCCCCEEE
Q 007620 332 GSKDVAPRVL--FDR---VFENVYSDPGSPMMTRTSTGTNVI 368 (595)
Q Consensus 332 ~~~~~~~~~l--~~~---~~~~~~~~~~~~~~~~~~dg~~l~ 368 (595)
+.. .+..++ +.. ++.. +.|.|.-..|+
T Consensus 135 ded-dEfec~aVL~~HtqDVK~---------V~WHPt~dlL~ 166 (312)
T KOG0645|consen 135 DED-DEFECIAVLQEHTQDVKH---------VIWHPTEDLLF 166 (312)
T ss_pred cCC-CcEEEEeeeccccccccE---------EEEcCCcceeE
Confidence 543 243443 222 3333 77887654443
No 176
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=92.61 E-value=6.7 Score=38.12 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=39.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+..-+|++|++.||...+ ..+|.++...+.. ...+-...+. +..+..+.|+|.+.+|+-.
T Consensus 12 pitchAwn~drt~iAv~~~----------~~evhiy~~~~~~~w~~~htls~H--d~~vtgvdWap~snrIvtc 73 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPN----------NHEVHIYSMLGADLWEPAHTLSEH--DKIVTGVDWAPKSNRIVTC 73 (361)
T ss_pred ceeeeeecCCCceEEeccC----------CceEEEEEecCCCCceeceehhhh--CcceeEEeecCCCCceeEc
Confidence 3667799999999999764 3566666665655 3333222221 2256679999999877654
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.41 E-value=2.6 Score=42.25 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=35.1
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..-.++++||..||-... ++.-.+| +..... +.+.... ..+.+.++.|||||+.|+..
T Consensus 147 ~k~vaf~~~gs~latgg~--------dg~lRv~--~~Ps~~-t~l~e~~---~~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGT--------DGTLRVW--EWPSML-TILEEIA---HHAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred ceEEEEcCCCCEeeeccc--------cceEEEE--ecCcch-hhhhhHh---hcCccccceeCCCCcEEEEe
Confidence 456788888888877543 3444455 422221 1221111 12367899999999999886
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.37 E-value=0.9 Score=44.70 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=54.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCC-CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
++.|.|+.+ .++++.+.. ........|||||..||-.+. .++-|-|..+..|+ +++....+.
T Consensus 154 dV~l~d~~n------l~~v~~I~aH~~~lAalafs~~G~llATASe---------KGTVIRVf~v~~G~--kl~eFRRG~ 216 (391)
T KOG2110|consen 154 DVVLFDTIN------LQPVNTINAHKGPLAALAFSPDGTLLATASE---------KGTVIRVFSVPEGQ--KLYEFRRGT 216 (391)
T ss_pred eEEEEEccc------ceeeeEEEecCCceeEEEECCCCCEEEEecc---------CceEEEEEEcCCcc--EeeeeeCCc
Confidence 566776652 223322222 225778899999999988763 45888888988776 343334433
Q ss_pred ccccccceEEecCCcEEEEEe
Q 007620 85 LNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~ 105 (595)
....+-++.|+||++.|..+.
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred eeeEEEEEEECCCCCeEEEec
Confidence 222345899999999888763
No 179
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=92.35 E-value=0.4 Score=47.03 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=40.9
Q ss_pred EEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC---CchhHHHhccCeEEE
Q 007620 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT---PTSSLIFLARRFAVL 559 (595)
Q Consensus 483 e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~---~~~~q~la~~GY~Vl 559 (595)
|.+.|. .+|.+|.|+|+.|.+-+ + |.||++| ||+..+...+ ......|+++||.|+
T Consensus 3 ~~~~~~-~~~~~l~g~~~~p~~~~--~----~~vv~i~--------------gg~~~~~g~~~~~~~la~~l~~~G~~v~ 61 (274)
T TIGR03100 3 RALTFS-CEGETLVGVLHIPGASH--T----TGVLIVV--------------GGPQYRVGSHRQFVLLARRLAEAGFPVL 61 (274)
T ss_pred eeEEEE-cCCcEEEEEEEcCCCCC--C----CeEEEEe--------------CCccccCCchhHHHHHHHHHHHCCCEEE
Confidence 457776 47899999999997521 1 3444433 2222111111 112468899999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. +|.+..|+
T Consensus 62 ~-~Dl~G~G~ 70 (274)
T TIGR03100 62 R-FDYRGMGD 70 (274)
T ss_pred E-eCCCCCCC
Confidence 9 99888775
No 180
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=92.34 E-value=0.24 Score=48.16 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=42.1
Q ss_pred EEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCC-CCcccCCCCchhHHHhccCeEEEeCC
Q 007620 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGS-PNEFSGMTPTSSLIFLARRFAVLAGP 562 (595)
Q Consensus 484 ~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~gg-p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (595)
.|.+++..|. +.++++.|.+-. +.|+||++||- ++ ...+..........|+++||.|+. +
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~~-----~~~~VlllHG~------------g~~~~~~~~~~~~la~~La~~Gy~Vl~-~ 62 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAVG-----PRGVVIYLPPF------------AEEMNKSRRMVALQARAFAAGGFGVLQ-I 62 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCCC-----CceEEEEECCC------------cccccchhHHHHHHHHHHHHCCCEEEE-E
Confidence 4667776765 678888887521 33889988741 11 001111101123588899999999 9
Q ss_pred CCceeecC
Q 007620 563 SIPIIGEG 570 (595)
Q Consensus 563 ~~~~~~~~ 570 (595)
|.|..|+-
T Consensus 63 Dl~G~G~S 70 (266)
T TIGR03101 63 DLYGCGDS 70 (266)
T ss_pred CCCCCCCC
Confidence 99988753
No 181
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=92.31 E-value=11 Score=36.15 Aligned_cols=67 Identities=9% Similarity=0.171 Sum_probs=38.4
Q ss_pred ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
++.|.++.. ..+...|.||.+.|+.+.. ....|+.+++++.-.+++.- ... +....+++..+++.
T Consensus 14 ~~~l~g~~~--e~SGLTy~pd~~tLfaV~d---------~~~~i~els~~G~vlr~i~l-~g~---~D~EgI~y~g~~~~ 78 (248)
T PF06977_consen 14 AKPLPGILD--ELSGLTYNPDTGTLFAVQD---------EPGEIYELSLDGKVLRRIPL-DGF---GDYEGITYLGNGRY 78 (248)
T ss_dssp EEE-TT--S---EEEEEEETTTTEEEEEET---------TTTEEEEEETT--EEEEEE--SS----SSEEEEEE-STTEE
T ss_pred eeECCCccC--CccccEEcCCCCeEEEEEC---------CCCEEEEEcCCCCEEEEEeC-CCC---CCceeEEEECCCEE
Confidence 345544333 3899999999999877763 45789999986444455432 210 13456777777754
Q ss_pred EE
Q 007620 101 LI 102 (595)
Q Consensus 101 l~ 102 (595)
++
T Consensus 79 vl 80 (248)
T PF06977_consen 79 VL 80 (248)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 182
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=92.25 E-value=0.23 Score=46.63 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=32.5
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceee
Q 007620 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (595)
Q Consensus 497 g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~ 568 (595)
++||+|.+++ +++ |+||+.|+... .+..+... +.+.+++...||+|+. |+.+..+
T Consensus 1 ~~ly~P~~~~--~~~--P~vv~lHG~~~-----------~~~~~~~~-~~~~~~a~~~g~~Vv~-Pd~~g~~ 55 (212)
T TIGR01840 1 MYVYVPAGLT--GPR--ALVLALHGCGQ-----------TASAYVID-WGWKAAADRYGFVLVA-PEQTSYN 55 (212)
T ss_pred CEEEcCCCCC--CCC--CEEEEeCCCCC-----------CHHHHhhh-cChHHHHHhCCeEEEe-cCCcCcc
Confidence 4799999864 334 99999875311 11112110 1133566667999999 7766543
No 183
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=92.19 E-value=0.21 Score=48.99 Aligned_cols=28 Identities=43% Similarity=0.795 Sum_probs=20.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
||.+|.+.||+| +.+.++ |+|+||..+|
T Consensus 1 DGv~L~adv~~P-~~~~~~--~~P~il~~tp 28 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGG--PFPVILTRTP 28 (272)
T ss_dssp TS-EEEEEEEEE---TTSS--SEEEEEEEES
T ss_pred CCCEEEEEEEec-CCCCCC--cccEEEEccC
Confidence 899999999999 555444 5699998654
No 184
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=92.06 E-value=0.55 Score=47.91 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=78.9
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
||.|+||.+ .-..|++.+++.+ .+...+|+||.+|. +.. -.+.|-.+|+..|...+-.++..
T Consensus 532 nI~vwDLhn---q~~VrqfqGhtDG--ascIdis~dGtklW-TGG---------lDntvRcWDlregrqlqqhdF~S--- 593 (705)
T KOG0639|consen 532 NIAVWDLHN---QTLVRQFQGHTDG--ASCIDISKDGTKLW-TGG---------LDNTVRCWDLREGRQLQQHDFSS--- 593 (705)
T ss_pred cEEEEEccc---ceeeecccCCCCC--ceeEEecCCCceee-cCC---------Cccceeehhhhhhhhhhhhhhhh---
Confidence 789999995 5577889887776 88999999999874 332 13456666887664322222222
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
.+-++...|.+.+|++.+. .++++++..+
T Consensus 594 --QIfSLg~cP~~dWlavGMe-------------------------------------------------ns~vevlh~s 622 (705)
T KOG0639|consen 594 --QIFSLGYCPTGDWLAVGME-------------------------------------------------NSNVEVLHTS 622 (705)
T ss_pred --hheecccCCCccceeeecc-------------------------------------------------cCcEEEEecC
Confidence 2446778899999888421 2455666665
Q ss_pred C-CeeecCCCC-eeeeeEECCCCCeEEEEE
Q 007620 166 G-TAKDFGTPA-VYTAVEPSPDQKYVLITS 193 (595)
Q Consensus 166 g-~~~~lt~~~-~~~~~~~SpDg~~l~~~~ 193 (595)
+ +.-+|...+ -+.++.|++=|++.+-+.
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecC
Confidence 5 444565433 345889999999876553
No 185
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.06 E-value=7.2 Score=42.14 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=38.2
Q ss_pred eEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+||++|+.|+-.. .+.|-.+|++++... +..... .....+..+.-+||++.|+..
T Consensus 25 ~~~s~nG~~L~t~~-----------~d~Vi~idv~t~~~~-l~s~~~-ed~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-----------GDRVIIIDVATGSIA-LPSGSN-EDEDEITALALTPDEEVLVTA 80 (775)
T ss_pred eeECCCCCEEEEec-----------CceEEEEEccCCcee-cccCCc-cchhhhheeeecCCccEEEEe
Confidence 89999999876553 356888899998864 322211 111235688899998887775
No 186
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=91.95 E-value=0.83 Score=49.62 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=52.6
Q ss_pred ceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccc
Q 007620 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (595)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (595)
...|.++|.-+.+..+.+.... ..+.++.+||||++|+....+
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~----nritd~~FS~DgrWlisasmD--------------------------------- 597 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHG----NRITDMTFSPDGRWLISASMD--------------------------------- 597 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccc----cceeeeEeCCCCcEEEEeecC---------------------------------
Confidence 4678888887766555443221 157799999999999886321
Q ss_pred cccCcCCccceEEeecceEEEEcC-CCCeee-cCCCCeeeeeEECCCCCeEEEEEcc
Q 007620 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYVLITSMH 195 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-lt~~~~~~~~~~SpDg~~l~~~~~~ 195 (595)
+.|.++|+ +|.... +.-+.....+++||+|.+|+.+...
T Consensus 598 ----------------~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 598 ----------------STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ----------------CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 23455565 553321 2222223578999999999988653
No 187
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=91.73 E-value=13 Score=35.86 Aligned_cols=134 Identities=12% Similarity=0.040 Sum_probs=64.9
Q ss_pred eEEEEcC-CCCeeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCc
Q 007620 158 QLVLGSL-DGTAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (595)
Q Consensus 158 ~l~~~d~-~g~~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~ 235 (595)
++-++|+ ..+..++. ..-..+.+.|..++..+.....+ .+|.+||+..+...-+...
T Consensus 156 t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId-------------n~ikvWd~r~~d~~~~lsG-------- 214 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID-------------NDIKVWDLRKNDGLYTLSG-------- 214 (338)
T ss_pred eEEEEeecccchhhccccceeEEEEEecccccceeecccc-------------CceeeeccccCcceEEeec--------
Confidence 4445555 22322222 22234688898888887655432 3677888754333222111
Q ss_pred cccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eecccc-----CccccceeecCC
Q 007620 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-----DLRFRSVSWCDD 309 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~-----~~~~~~~~wspD 309 (595)
++.-...+..+++|...+- ..+...+.+||.-|+..++. ..+... +-....-+|||+
T Consensus 215 ----h~DtIt~lsls~~gs~lls-------------nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 215 ----HADTITGLSLSRYGSFLLS-------------NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred ----ccCceeeEEeccCCCcccc-------------ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 0011223555666653110 12334555556545543333 112211 112345689999
Q ss_pred CcEEEEEEeecccceEEEEEeCCC
Q 007620 310 SLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 310 g~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+..+.+.... + .+|+.|..+
T Consensus 278 ~~~i~ags~d--r--~vyvwd~~~ 297 (338)
T KOG0265|consen 278 GTKITAGSAD--R--FVYVWDTTS 297 (338)
T ss_pred CCcccccccc--c--eEEEeeccc
Confidence 8765443321 1 577777655
No 188
>PRK10566 esterase; Provisional
Probab=91.71 E-value=0.2 Score=48.20 Aligned_cols=64 Identities=17% Similarity=0.337 Sum_probs=39.6
Q ss_pred EECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCce
Q 007620 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 487 ~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
.++.....+..+++.|.+ ..++ +.|+||++|+. +..-. .+....+.|+++||.|+. ++.+.
T Consensus 4 ~~~~~~~~~~~~~~~p~~-~~~~--~~p~vv~~HG~--------------~~~~~-~~~~~~~~l~~~G~~v~~-~d~~g 64 (249)
T PRK10566 4 IETRELAGIEVLHAFPAG-QRDT--PLPTVFFYHGF--------------TSSKL-VYSYFAVALAQAGFRVIM-PDAPM 64 (249)
T ss_pred EEEEEecCcceEEEcCCC-CCCC--CCCEEEEeCCC--------------Ccccc-hHHHHHHHHHhCCCEEEE-ecCCc
Confidence 444444566678888975 2223 34999997742 11100 111235799999999999 88877
Q ss_pred eec
Q 007620 567 IGE 569 (595)
Q Consensus 567 ~~~ 569 (595)
.|.
T Consensus 65 ~G~ 67 (249)
T PRK10566 65 HGA 67 (249)
T ss_pred ccc
Confidence 654
No 189
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=91.55 E-value=6.5 Score=38.27 Aligned_cols=59 Identities=7% Similarity=0.039 Sum_probs=32.1
Q ss_pred ccccceeecCCC-cEEEEEEeecccceEEEEEeCCCCCCCcEEE-e--ecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 299 LRFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVL-F--DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 299 ~~~~~~~wspDg-~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l-~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
+-++.++++|-. +.++..... ....||.- ++ ..+-.+ . ...+.. ++|.+||..++..+.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~--q~~giy~~--~~--~~pl~llggh~gGvTh---------L~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYG--QRVGIYND--DG--RRPLQLLGGHGGGVTH---------LQWCEDGNKLFSGAR 270 (406)
T ss_pred ceeeeeeccCCCCcceeeeccc--ceeeeEec--CC--CCceeeecccCCCeee---------EEeccCcCeeccccc
Confidence 346778889854 345443321 22345443 33 223333 2 223444 899999998876654
No 190
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=91.42 E-value=0.92 Score=48.22 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=45.2
Q ss_pred CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEe-cccCCCccccccccceEEecCCcEEEEEec
Q 007620 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
+..+.....||+|+.||-...... .....|++++...-...+ |-...- .+..+.|||||++|+-...
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~-----~ehAvI~lw~t~~W~~~~~L~~HsL-----TVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSL-----KEHAVIRLWNTANWLQVQELEGHSL-----TVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCC-----ccceEEEEEeccchhhhheecccce-----EEEEEEECCCCcEEEEeec
Confidence 335778899999998877654322 345678888876543333 322221 4679999999999887643
No 191
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.41 E-value=2 Score=42.30 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=47.5
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~ 84 (595)
+|-|+|.. ++...++++ .+...+...+|+|--+.|.-+... ...|.++|+..+.+. .|+- .-
T Consensus 168 ~i~IWD~~---R~~Pv~sms--wG~Dti~svkfNpvETsILas~~s---------DrsIvLyD~R~~~Pl~KVi~-~m-- 230 (433)
T KOG0268|consen 168 QIDIWDEQ---RDNPVSSMS--WGADSISSVKFNPVETSILASCAS---------DRSIVLYDLRQASPLKKVIL-TM-- 230 (433)
T ss_pred eeeecccc---cCCccceee--cCCCceeEEecCCCcchheeeecc---------CCceEEEecccCCccceeee-ec--
Confidence 45666666 355555555 333357888999988877766532 356888899877642 2211 11
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
.-..+.|+| +...|+
T Consensus 231 ---RTN~IswnP--eafnF~ 245 (433)
T KOG0268|consen 231 ---RTNTICWNP--EAFNFV 245 (433)
T ss_pred ---cccceecCc--ccccee
Confidence 235789999 445554
No 192
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=91.30 E-value=0.41 Score=48.87 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=44.1
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCC-chhHHHhccCeEEEe
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLA 560 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~-~~~q~la~~GY~Vl~ 560 (595)
.+...+...||.+|.+....|.+- + +.|+||++|+- ... ...++ ...+.|+++||.|+.
T Consensus 61 ~~~~~~~~~~g~~l~~~~~~p~~~---~--~~~~iv~lHG~--------------~~~-~~~~~~~~~~~l~~~g~~v~~ 120 (349)
T PLN02385 61 TEESYEVNSRGVEIFSKSWLPENS---R--PKAAVCFCHGY--------------GDT-CTFFFEGIARKIASSGYGVFA 120 (349)
T ss_pred eeeeeEEcCCCCEEEEEEEecCCC---C--CCeEEEEECCC--------------CCc-cchHHHHHHHHHHhCCCEEEE
Confidence 344456678999999999998742 1 33888887631 110 01111 124678889999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
+|.|..|.
T Consensus 121 -~D~~G~G~ 128 (349)
T PLN02385 121 -MDYPGFGL 128 (349)
T ss_pred -ecCCCCCC
Confidence 99888774
No 193
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.16 E-value=0.29 Score=47.05 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=38.1
Q ss_pred EEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 485 v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
.++. .+|...++|||.|++.+.++ |+||+.|+... .++++-| .. .+..+....||+|+.
T Consensus 38 ~s~~-~~g~~r~y~l~vP~g~~~~a----pLvv~LHG~~~---sgag~~~--------~s-g~d~lAd~~gFlV~y 96 (312)
T COG3509 38 ASFD-VNGLKRSYRLYVPPGLPSGA----PLVVVLHGSGG---SGAGQLH--------GT-GWDALADREGFLVAY 96 (312)
T ss_pred cccc-cCCCccceEEEcCCCCCCCC----CEEEEEecCCC---ChHHhhc--------cc-chhhhhcccCcEEEC
Confidence 4554 58899999999999987643 88888886411 1111211 11 112466666999999
No 194
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=91.01 E-value=18 Score=35.96 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=38.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+...+.+|+.+ ++.+... + .--|++++.+|+ +-.+|..++ .+....||-||.+|+-
T Consensus 66 svFavsl~P~~~-l~aTGGg-------D--D~AflW~~~~ge~~~eltgHKD-----SVt~~~FshdgtlLAT 123 (399)
T KOG0296|consen 66 SVFAVSLHPNNN-LVATGGG-------D--DLAFLWDISTGEFAGELTGHKD-----SVTCCSFSHDGTLLAT 123 (399)
T ss_pred ceEEEEeCCCCc-eEEecCC-------C--ceEEEEEccCCcceeEecCCCC-----ceEEEEEccCceEEEe
Confidence 577788999555 4444321 2 334555777776 667776665 6789999999998765
No 195
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=90.80 E-value=1.2 Score=45.76 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=52.0
Q ss_pred eeeeEEE-ecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 4 FTGIGIH-RLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 4 ~~~~~~~-~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
.++.|+. |-. +....++. ..+...+..++||||..||.-+. ++.--||+++..+.+-.++-....
T Consensus 426 ~~G~w~V~d~e----~~~lv~~~--~d~~~ls~v~ysp~G~~lAvgs~--------d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 426 ATGRWFVLDTE----TQDLVTIH--TDNEQLSVVRYSPDGAFLAVGSH--------DNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred ccceEEEEecc----cceeEEEE--ecCCceEEEEEcCCCCEEEEecC--------CCeEEEEEECCCCcEEEEeeeecC
Confidence 3455554 554 44444554 34567888999999999998764 344556666655555555532222
Q ss_pred ccccccccceEEecCCcEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~ 103 (595)
..+..+.||+|++.|.-
T Consensus 492 ----s~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 492 ----SPITHLDWSSDSQFLVS 508 (626)
T ss_pred ----ceeEEeeecCCCceEEe
Confidence 25668899999997654
No 196
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.15 E-value=41 Score=38.98 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=27.7
Q ss_pred eEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..|.++|+++.....+..... ++....||||++.+++.
T Consensus 90 G~iilvd~et~~~eivg~vd~-----GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 90 GDIILVDPETLELEIVGNVDN-----GISAASWSPDEELLALI 127 (1265)
T ss_pred CcEEEEcccccceeeeeeccC-----ceEEEeecCCCcEEEEE
Confidence 456666777666666644443 68899999999998886
No 197
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=90.03 E-value=1.4 Score=48.74 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=45.4
Q ss_pred cccceEEccCCCEEEEEEec-ccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEe
Q 007620 32 KINFVSWSPDGKRIAFSVRV-DEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~-~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
.++.+..+|+|..++|+... +... ....+.+|+.+.+. .+.++... ....+.|+|||+.++|..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~d~~~--~~~~~~~~------~~~~~~~spdg~~~~~~~ 78 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLK--PLYKSSLWVSDGKT--VRLLTFGG------GVSELRWSPDGSVLAFVS 78 (620)
T ss_pred cccCcccCCCCceeEEeeccccccc--cccccceEEEeccc--ccccccCC------cccccccCCCCCEEEEEe
Confidence 57889999999999998874 1111 13467899977654 33333222 467899999999999973
No 198
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=89.95 E-value=13 Score=39.77 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=85.6
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCC-cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
+.+.|+.|++++ .-+.+.+...+... ..+...|+-|++.+.+++. ...+|.++++++..-+.+-.....
T Consensus 403 ~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~---------~~~~le~~el~~ps~kel~~~~~~ 472 (691)
T KOG2048|consen 403 SRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK---------NIFSLEEFELETPSFKELKSIQSQ 472 (691)
T ss_pred cceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEec---------ccceeEEEEecCcchhhhhccccc
Confidence 466778888644 33444444333322 4677899999998888762 246777777776543333222111
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
.....++.+.-|+||.+|+... ..++|++++
T Consensus 473 ~~~~~I~~l~~SsdG~yiaa~~-------------------------------------------------t~g~I~v~n 503 (691)
T KOG2048|consen 473 AKCPSISRLVVSSDGNYIAAIS-------------------------------------------------TRGQIFVYN 503 (691)
T ss_pred cCCCcceeEEEcCCCCEEEEEe-------------------------------------------------ccceEEEEE
Confidence 1112466888999999988852 135788889
Q ss_pred CCC-CeeecCC--CCeeeeeEECCC-CCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 164 LDG-TAKDFGT--PAVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 164 ~~g-~~~~lt~--~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
+.+ +-+.|.. +...+...++|. -..|++...+ .+++-+|++.
T Consensus 504 l~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~-------------nQv~efdi~~ 549 (691)
T KOG2048|consen 504 LETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN-------------NQVFEFDIEA 549 (691)
T ss_pred cccceeecchhccCcceeeeeccccccCcEEEEecC-------------CeEEEEecch
Confidence 844 5555442 234567788865 4566666432 3677777743
No 199
>PRK10162 acetyl esterase; Provisional
Probab=89.67 E-value=1.4 Score=44.30 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=39.3
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhc-cCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~-~GY~Vl 559 (595)
..+.++++..+| +|...+|+|.. + +.|+|||+|+|-| +.|++..+ ......||. .||.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~----~--~~p~vv~~HGGg~--------~~g~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP----D--SQATLFYLHGGGF--------ILGNLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC----C--CCCEEEEEeCCcc--------cCCCchhh----hHHHHHHHHHcCCEEE
Confidence 467788888888 59999999952 1 2399999875411 12222111 112456776 599999
Q ss_pred e
Q 007620 560 A 560 (595)
Q Consensus 560 ~ 560 (595)
.
T Consensus 117 ~ 117 (318)
T PRK10162 117 G 117 (318)
T ss_pred E
Confidence 8
No 200
>PRK13614 lipoprotein LpqB; Provisional
Probab=89.55 E-value=35 Score=37.10 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=40.6
Q ss_pred CCCceeeecCCCC--CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEe
Q 007620 18 LGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (595)
Q Consensus 18 ~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws 95 (595)
++...++.+.... .....+..|+||+.+|++.. ....||+... ++..+.+.... ....+.|.
T Consensus 328 ~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~---------~~~~l~~~~~-g~~~~~~~~g~------~Lt~PS~d 391 (573)
T PRK13614 328 NGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNG---------SRTTLYTVSP-GQPARALTSGS------TLTRPSFS 391 (573)
T ss_pred CCCcccCCCccCcCcccccceeecCCCceEEEecC---------CCcEEEEecC-CCcceeeecCC------CccCCccc
Confidence 4444555443321 14567899999999999842 2368888776 44555554322 35677888
Q ss_pred cCC
Q 007620 96 NNS 98 (595)
Q Consensus 96 pdg 98 (595)
++|
T Consensus 392 ~~g 394 (573)
T PRK13614 392 PQD 394 (573)
T ss_pred CCC
Confidence 777
No 201
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=89.40 E-value=1.1 Score=48.73 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=52.1
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcccc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (595)
|.+.|+.. -.-.|++.+ .+..+....|||||++|+-.+. ...|.++|+.+|...-......
T Consensus 558 I~vvD~~t---~kvvR~f~g--h~nritd~~FS~DgrWlisasm----------D~tIr~wDlpt~~lID~~~vd~---- 618 (910)
T KOG1539|consen 558 IRVVDVVT---RKVVREFWG--HGNRITDMTFSPDGRWLISASM----------DSTIRTWDLPTGTLIDGLLVDS---- 618 (910)
T ss_pred EEEEEchh---hhhhHHhhc--cccceeeeEeCCCCcEEEEeec----------CCcEEEEeccCcceeeeEecCC----
Confidence 44556651 223344443 3336899999999999987764 2567777998887443322222
Q ss_pred ccccceEEecCCcEEEEEe
Q 007620 87 AVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 87 ~~~~~~~Wspdg~~l~~~~ 105 (595)
...++.+||+|..|+-+.
T Consensus 619 -~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 619 -PCTSLSFSPNGDFLATVH 636 (910)
T ss_pred -cceeeEECCCCCEEEEEE
Confidence 345889999999998863
No 202
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.31 E-value=37 Score=37.13 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=73.0
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE-eccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
....+++||||++|++.-.+.. -.+|-+| +=+... |+.. .+| +..+..|||++
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnT-----------VkVyflD--tlKFflsLYGH----kLP---------V~smDIS~DSk 563 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNT-----------VKVYFLD--TLKFFLSLYGH----KLP---------VLSMDISPDSK 563 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCe-----------EEEEEec--ceeeeeeeccc----ccc---------eeEEeccCCcC
Confidence 3457899999999999875431 2333333 222111 2211 122 24577789987
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+... .+.+ ..-++|-+| - |+- +.++..+-++..+.|.|+... .+... +++ .+-.+|.+.
T Consensus 564 --livT---gSAD------KnVKiWGLd----F-GDCHKS~fAHdDSvm~V~F~P~~~~-FFt~g-KD~--kvKqWDg~k 623 (888)
T KOG0306|consen 564 --LIVT---GSAD------KNVKIWGLD----F-GDCHKSFFAHDDSVMSVQFLPKTHL-FFTCG-KDG--KVKQWDGEK 623 (888)
T ss_pred --eEEe---ccCC------CceEEeccc----c-chhhhhhhcccCceeEEEEccccee-EEEec-Ccc--eEEeechhh
Confidence 2221 1111 111344444 2 343 346666667778889996543 33221 122 455555443
Q ss_pred CCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEE
Q 007620 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (595)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~ 382 (595)
- +..+.++....+.. .+..+|+|.+++-..++ ...++|
T Consensus 624 F--e~iq~L~~H~~ev~------cLav~~~G~~vvs~shD---~sIRlw 661 (888)
T KOG0306|consen 624 F--EEIQKLDGHHSEVW------CLAVSPNGSFVVSSSHD---KSIRLW 661 (888)
T ss_pred h--hhheeeccchheee------eeEEcCCCCeEEeccCC---ceeEee
Confidence 1 11111232222211 15678889877655543 245555
No 203
>COG4099 Predicted peptidase [General function prediction only]
Probab=88.96 E-value=1.3 Score=42.57 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
.-|.+|...||.|.+++++||| .|+|||.|+
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky-~PLvlfLHg 199 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKY-YPLVLFLHG 199 (387)
T ss_pred ccCceeeEEEecccccCCCCcc-ccEEEEEec
Confidence 3678999999999999999987 588888775
No 204
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=88.93 E-value=8.7 Score=38.62 Aligned_cols=120 Identities=17% Similarity=0.091 Sum_probs=68.7
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
.-..+|...|.-|. ++ +...-||.++.++|.+..++...++..-.-..++..++ ...|+|+-...+-..
T Consensus 117 PLGl~f~~~ggdL~-Va---------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 117 PLGIRFDKKGGDLY-VA---------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDR 185 (376)
T ss_pred cceEEeccCCCeEE-EE---------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccch
Confidence 44557777775443 33 34677899999999988887665432111123566666 334677621110000
Q ss_pred CCccccCCCCeeeecCcccccccccc-cccccCcCCccceEEeecceEEEEcCCC-CeeecCCCC-eeeeeEECCCCCeE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMT-DNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYV 189 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~~-~~~~~~~SpDg~~l 189 (595)
+.+ -.+ ++.....+|+.+|... +.+.|.+.- +...++.|||++++
T Consensus 186 -----------------------rd~~~a~---------l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfv 233 (376)
T KOG1520|consen 186 -----------------------RDFVFAA---------LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFV 233 (376)
T ss_pred -----------------------hheEEee---------ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEE
Confidence 000 000 0111356788899844 566665553 33588999999999
Q ss_pred EEEEcc
Q 007620 190 LITSMH 195 (595)
Q Consensus 190 ~~~~~~ 195 (595)
+|+...
T Consensus 234 l~~Et~ 239 (376)
T KOG1520|consen 234 LVAETT 239 (376)
T ss_pred EEEeec
Confidence 999753
No 205
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.65 E-value=1.3 Score=44.25 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=42.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..+..+|||||+++|--+. ...||++++.+|+...+..... .+..+.++.|+|-|+.|+-.
T Consensus 389 DwtrvvfSpd~~YvaAGS~----------dgsv~iW~v~tgKlE~~l~~s~--s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSA----------DGSVYIWSVFTGKLEKVLSLST--SNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred ccceeEECCCCceeeeccC----------CCcEEEEEccCceEEEEeccCC--CCcceEEEEEcCCCchhhcc
Confidence 3567899999999887543 3568888999998644433221 12246789999999976654
No 206
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.39 E-value=25 Score=38.26 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=31.7
Q ss_pred CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEE--ecCCcEEEEE
Q 007620 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW--VNNSTLLIFT 104 (595)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~W--spdg~~l~~~ 104 (595)
||++| |+-. +....|-+++++.-+..+|+..+... ++...++ .|+-.+++..
T Consensus 140 dGr~~-find--------k~n~Rvari~l~~~~~~~i~~iPn~~---~~Hg~~~~~~p~t~yv~~~ 193 (635)
T PRK02888 140 DGRYL-FIND--------KANTRVARIRLDVMKCDKITELPNVQ---GIHGLRPQKIPRTGYVFCN 193 (635)
T ss_pred ceeEE-EEec--------CCCcceEEEECccEeeceeEeCCCcc---CccccCccccCCccEEEeC
Confidence 67665 5432 35678999999887777777665422 2233333 3676666553
No 207
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=88.39 E-value=0.89 Score=34.93 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=34.9
Q ss_pred CcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceee
Q 007620 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (595)
Q Consensus 492 G~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~ 568 (595)
|.+|....+.|++- +..+|+.+|+- .-|.+ .| -..++.|+++||+|+. .|...-|
T Consensus 1 G~~L~~~~w~p~~~------~k~~v~i~HG~---------~eh~~--ry----~~~a~~L~~~G~~V~~-~D~rGhG 55 (79)
T PF12146_consen 1 GTKLFYRRWKPENP------PKAVVVIVHGF---------GEHSG--RY----AHLAEFLAEQGYAVFA-YDHRGHG 55 (79)
T ss_pred CcEEEEEEecCCCC------CCEEEEEeCCc---------HHHHH--HH----HHHHHHHHhCCCEEEE-ECCCcCC
Confidence 67899999999852 22777776531 00100 11 1236899999999998 5555544
No 208
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=87.44 E-value=20 Score=36.43 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=36.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC--ceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g--~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|+|--+.|.-.+. ....|.+.|+.++ ++....... .+.+..++|.|-+..|+-+
T Consensus 229 ~VeDV~~h~~h~~lF~sv~---------dd~~L~iwD~R~~~~~~~~~~~ah----~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVG---------DDGKLMIWDTRSNTSKPSHSVKAH----SAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred ceehhhccccchhhheeec---------CCCeEEEEEcCCCCCCCccccccc----CCceeEEEeCCCCCceEEe
Confidence 5778889996665543332 2467888898853 322222111 2256788999887765554
No 209
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=87.43 E-value=39 Score=35.15 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=34.9
Q ss_pred CccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe---ecccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF---DRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
...++.+.+||||..|+..+. +...-||+++.++ .....+- ...... +-||.|++++.-.
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~--d~~iyiy~Vs~~g--~~y~r~~k~~gs~ith---------LDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSH--DNHIYIYRVSANG--RKYSRVGKCSGSPITH---------LDWSSDSQFLVSN 509 (626)
T ss_pred CCceEEEEEcCCCCEEEEecC--CCeEEEEEECCCC--cEEEEeeeecCceeEE---------eeecCCCceEEec
Confidence 455778999999998887652 2333455555544 2222221 111122 7899999976543
No 210
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.25 E-value=9.3 Score=37.81 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=24.4
Q ss_pred ccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 294 l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
|...+..+....|+|.|+.|+.-. +++ .|.++|+..
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~Sca--DDk--tlrvwdl~~ 365 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCA--DDK--TLRVWDLKN 365 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEe--cCC--cEEEEEecc
Confidence 335566788899999999877653 233 455667665
No 211
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.12 E-value=16 Score=35.50 Aligned_cols=68 Identities=9% Similarity=0.147 Sum_probs=41.5
Q ss_pred CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007620 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (595)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~ 99 (595)
.++++++... ..+...|+||.+.|.-+.+ ...+|.-++..|.-.+++.- ... .....+.|.-+|+
T Consensus 77 ~akpi~g~~~--nvS~LTynp~~rtLFav~n---------~p~~iVElt~~GdlirtiPL-~g~---~DpE~Ieyig~n~ 141 (316)
T COG3204 77 DAKPILGETA--NVSSLTYNPDTRTLFAVTN---------KPAAIVELTKEGDLIRTIPL-TGF---SDPETIEYIGGNQ 141 (316)
T ss_pred eccccccccc--cccceeeCCCcceEEEecC---------CCceEEEEecCCceEEEecc-ccc---CChhHeEEecCCE
Confidence 3455665444 4999999999998766553 34777778876655555521 110 0234677777776
Q ss_pred EEE
Q 007620 100 LLI 102 (595)
Q Consensus 100 ~l~ 102 (595)
.++
T Consensus 142 fvi 144 (316)
T COG3204 142 FVI 144 (316)
T ss_pred EEE
Confidence 433
No 212
>PHA02857 monoglyceride lipase; Provisional
Probab=86.85 E-value=1.2 Score=43.64 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=41.3
Q ss_pred EECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCce
Q 007620 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 487 ~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
|.+.||..|.+.++.|.+ . +.|+|+++|+- ... ...+....+.|+.+||.|+. +|.|.
T Consensus 5 ~~~~~g~~l~~~~~~~~~----~--~~~~v~llHG~--------------~~~-~~~~~~~~~~l~~~g~~via-~D~~G 62 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT----Y--PKALVFISHGA--------------GEH-SGRYEELAENISSLGILVFS-HDHIG 62 (276)
T ss_pred eecCCCCEEEEEeccCCC----C--CCEEEEEeCCC--------------ccc-cchHHHHHHHHHhCCCEEEE-ccCCC
Confidence 456799999999998852 1 22788876631 110 11111235789999999999 99998
Q ss_pred eec
Q 007620 567 IGE 569 (595)
Q Consensus 567 ~~~ 569 (595)
.|.
T Consensus 63 ~G~ 65 (276)
T PHA02857 63 HGR 65 (276)
T ss_pred CCC
Confidence 875
No 213
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=86.60 E-value=38 Score=34.13 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=52.1
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE-eccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
+..+.|.|--.-+++++.- ...+.+||+.+|+... |. .|. -..+++|+.||..
T Consensus 134 Vg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~-hpd-------------~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 134 VGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLD-HPD-------------MVYSMSFNRDGSL 187 (472)
T ss_pred EEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecC-CCC-------------eEEEEEeccCCce
Confidence 4567899987777766542 2378899998776433 32 221 1235788888873
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcE
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLA 312 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~ 312 (595)
++-. . ....+.++|. -+| +...-. ........+.|..+|..
T Consensus 188 -l~Tt-c-----------kDKkvRv~dp--r~~-~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 188 -LCTT-C-----------KDKKVRVIDP--RRG-TVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred -eeee-c-----------ccceeEEEcC--CCC-cEeeecccccCCCcceeEEeccCce
Confidence 2221 1 1224566663 332 332211 12234556788888873
No 214
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=86.54 E-value=0.42 Score=44.97 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
|+++|..|.+- + |.|+||.+|. +. ++..........||++||.|+.
T Consensus 1 ~~ay~~~P~~~--~---~~~~Vvv~~d-----------~~----G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 1 IDAYVARPEGG--G---PRPAVVVIHD-----------IF----GLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEEEETTS--S---SEEEEEEE-B-----------TT----BS-HHHHHHHHHHHHTT-EEEE
T ss_pred CeEEEEeCCCC--C---CCCEEEEEcC-----------CC----CCchHHHHHHHHHHhcCCCEEe
Confidence 68999999863 1 3499998763 11 1111111235789999999999
No 215
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.44 E-value=5.9 Score=44.89 Aligned_cols=143 Identities=16% Similarity=0.260 Sum_probs=77.2
Q ss_pred cceEEEEcCCCCeeecCC-----CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCC
Q 007620 156 TAQLVLGSLDGTAKDFGT-----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPP 229 (595)
Q Consensus 156 ~~~l~~~d~~g~~~~lt~-----~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~ 229 (595)
.+.|+++|+..-..+.+. .+.+..++|.-.-.+|+.+.... ....+||+..++ +-.+.+.+.
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s------------g~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS------------GRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC------------CCceeccccCCCcccccccCCC
Confidence 457888888542222222 12345677877777777665432 367789987552 233333221
Q ss_pred CccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCC
Q 007620 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDD 309 (595)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspD 309 (595)
. .....+.|.||....|+.. ..|.. .-.+-+||+ -+.....+.+....-.+..+.|++.
T Consensus 206 ~-----------~~~S~l~WhP~~aTql~~A-s~dd~--------~PviqlWDl-R~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 206 R-----------MHCSVLAWHPDHATQLLVA-SGDDS--------APVIQLWDL-RFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred c-----------cceeeeeeCCCCceeeeee-cCCCC--------CceeEeecc-cccCCchhhhcccccceeeeccCCC
Confidence 0 0123589999998766543 21111 123445564 2332233344444555778899987
Q ss_pred CcEEEEEEeecccceEEEEEeCCCC
Q 007620 310 SLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 310 g~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
+..++..... ..+++..+..++
T Consensus 265 D~~lllSsgk---D~~ii~wN~~tg 286 (1049)
T KOG0307|consen 265 DPRLLLSSGK---DNRIICWNPNTG 286 (1049)
T ss_pred CchhhhcccC---CCCeeEecCCCc
Confidence 6544333321 236888888874
No 216
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=86.05 E-value=1.2 Score=46.32 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccC-eEEEe
Q 007620 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLA 560 (595)
Q Consensus 489 ~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~G-Y~Vl~ 560 (595)
+.|.+-|. ++.|. .+.+ ++||+||+|+|-|..|. .. ......+.||++| .+|+.
T Consensus 76 sEDCL~LN--IwaP~--~~a~--~~PVmV~IHGG~y~~Gs--------~s----~~~ydgs~La~~g~vVvVS 130 (491)
T COG2272 76 SEDCLYLN--IWAPE--VPAE--KLPVMVYIHGGGYIMGS--------GS----EPLYDGSALAARGDVVVVS 130 (491)
T ss_pred cccceeEE--eeccC--CCCC--CCcEEEEEeccccccCC--------Cc----ccccChHHHHhcCCEEEEE
Confidence 34655554 45677 2222 57999999987664321 11 1112347999999 88876
No 217
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=85.99 E-value=31 Score=32.54 Aligned_cols=148 Identities=14% Similarity=0.061 Sum_probs=76.5
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.+..+-|.-..+.|+-++.. ..+-+||..++.. +.|.. + ..+.++..++||+
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd-------------~tVRLWD~rTgt~v~sL~~-~-------------s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADD-------------KTVRLWDHRTGTEVQSLEF-N-------------SPVTSLEVSQDGR 197 (334)
T ss_pred cceeEEEeccCceEEeeccC-------------CceEEEEeccCcEEEEEec-C-------------CCCcceeeccCCC
Confidence 44566676666776655332 3677899775543 44421 1 1134567788887
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcEEEEEEeecccceEEEEEeCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~ 332 (595)
. |... + ...+..||+ . ....|- +.+..+..+..+|+...++... ....+|.+|..
T Consensus 198 i-lTia---~----------gssV~Fwda---k--sf~~lKs~k~P~nV~SASL~P~k~~fVaGg----ed~~~~kfDy~ 254 (334)
T KOG0278|consen 198 I-LTIA---Y----------GSSVKFWDA---K--SFGLLKSYKMPCNVESASLHPKKEFFVAGG----EDFKVYKFDYN 254 (334)
T ss_pred E-EEEe---c----------CceeEEecc---c--cccceeeccCccccccccccCCCceEEecC----cceEEEEEecc
Confidence 3 2221 1 122333454 1 111121 2345567788889876565542 12378899998
Q ss_pred CCCCCcEEEe-ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEe
Q 007620 333 SKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (595)
Q Consensus 333 ~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~ 384 (595)
++ +....+ .....- ...++++|||.. |..-+. |...+||.+
T Consensus 255 Tg--eEi~~~nkgh~gp------VhcVrFSPdGE~-yAsGSE--DGTirlWQt 296 (334)
T KOG0278|consen 255 TG--EEIGSYNKGHFGP------VHCVRFSPDGEL-YASGSE--DGTIRLWQT 296 (334)
T ss_pred CC--ceeeecccCCCCc------eEEEEECCCCce-eeccCC--CceEEEEEe
Confidence 85 333332 211110 023789999974 433322 234566644
No 218
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=84.66 E-value=52 Score=33.94 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=74.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
......++|||+.++..-.. .....+.++|..+++..+...... .......+|+|+.++....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~-------~~~~~vsvid~~t~~~~~~~~vG~-----~P~~~a~~p~g~~vyv~~~----- 179 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAG-------NGNNTVSVIDAATNKVTATIPVGN-----TPTGVAVDPDGNKVYVTNS----- 179 (381)
T ss_pred CCceEEECCCCCEEEEEecc-------cCCceEEEEeCCCCeEEEEEecCC-----CcceEEECCCCCeEEEEec-----
Confidence 56778999999987554331 135789999988877544421111 1146788899988777520
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-Ceee------cCCCCeeeeeEECC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKD------FGTPAVYTAVEPSP 184 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~------lt~~~~~~~~~~Sp 184 (595)
....|.++|.++ ...+ +........+.++|
T Consensus 180 -------------------------------------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 180 -------------------------------------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP 216 (381)
T ss_pred -------------------------------------------CCCeEEEEeCCCcceeccccccccccCCCCceEEECC
Confidence 023445555533 2222 11122234689999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
||+++++...... ...+.++|..++.....
T Consensus 217 ~g~~~yV~~~~~~----------~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 217 DGNRVYVANDGSG----------SNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCEEEEEeccCC----------CceEEEEeCCCceEEEe
Confidence 9999887754321 13677888877665543
No 219
>PRK13614 lipoprotein LpqB; Provisional
Probab=84.64 E-value=11 Score=40.81 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=45.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC---CCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+.|+||.++|++... +++.+|++.-+ ..|+++.|+..-.........++.|..++++++..
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~-------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~ 503 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQ-------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTK 503 (573)
T ss_pred eeEEEEECCCccEEEEEEEe-------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEe
Confidence 58899999999999999865 34566776432 45777888654221111235589999999966654
No 220
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=84.31 E-value=26 Score=37.18 Aligned_cols=93 Identities=9% Similarity=-0.037 Sum_probs=47.0
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecc-cccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVD-EEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~-~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
+||-|+.+. +++...|...-.....-...||-.-.+..++.... ..++ +..-+-.+++...++.+++.- ...
T Consensus 184 aNl~L~~~~----~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g--~~~~d~ciYE~~r~klqrvsv-tsi 256 (545)
T PF11768_consen 184 ANLHLLSCS----GGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKG--EPSADSCIYECSRNKLQRVSV-TSI 256 (545)
T ss_pred ccEEEEEec----CCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCC--CceeEEEEEEeecCceeEEEE-EEE
Confidence 477777776 55555554332222345567776444444544331 1111 122334445555555555421 112
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.+.+...+++|+.+.|+..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlG 277 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLG 277 (545)
T ss_pred ecCCcceEEecCcccceEEEE
Confidence 223355678888888887775
No 221
>PLN00021 chlorophyllase
Probab=84.19 E-value=1.5 Score=43.77 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=34.4
Q ss_pred cEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCce
Q 007620 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
..+++.+++|.. . .++ |+||++|+. ++. ...+......||++||+|+. |+.+.
T Consensus 37 ~~~p~~v~~P~~--~-g~~--PvVv~lHG~------------~~~---~~~y~~l~~~Las~G~~Vva-pD~~g 89 (313)
T PLN00021 37 PPKPLLVATPSE--A-GTY--PVLLFLHGY------------LLY---NSFYSQLLQHIASHGFIVVA-PQLYT 89 (313)
T ss_pred CCceEEEEeCCC--C-CCC--CEEEEECCC------------CCC---cccHHHHHHHHHhCCCEEEE-ecCCC
Confidence 478999999974 2 245 999997742 111 11111224678999999999 77654
No 222
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.04 E-value=19 Score=34.73 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCCceeeecCCCCCcccceEEccCCC-EEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEe
Q 007620 18 LGPEKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWV 95 (595)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Ws 95 (595)
.|+..--+.+|.. .....++|--. .+||.+ + ..+-.+++|..++. +..+...+... -++-=.||
T Consensus 57 aGk~v~~~~lpaR--~Hgi~~~p~~~ravafAR-r--------PGtf~~vfD~~~~~~pv~~~s~~~RH---fyGHGvfs 122 (366)
T COG3490 57 AGKIVFATALPAR--GHGIAFHPALPRAVAFAR-R--------PGTFAMVFDPNGAQEPVTLVSQEGRH---FYGHGVFS 122 (366)
T ss_pred CCceeeeeecccc--cCCeecCCCCcceEEEEe-c--------CCceEEEECCCCCcCcEEEecccCce---eecccccC
Confidence 4666655556664 77888999755 455544 3 34777888988765 44444333321 13344799
Q ss_pred cCCcEEEEE
Q 007620 96 NNSTLLIFT 104 (595)
Q Consensus 96 pdg~~l~~~ 104 (595)
|||++|+-+
T Consensus 123 ~dG~~LYAT 131 (366)
T COG3490 123 PDGRLLYAT 131 (366)
T ss_pred CCCcEEEee
Confidence 999988776
No 223
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=84.04 E-value=3.8 Score=39.27 Aligned_cols=88 Identities=15% Similarity=0.270 Sum_probs=55.4
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccC----
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES---- 80 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~---- 80 (595)
.-+-|+||+ ++.=.+.|.++-. .+-...|||..++|.++... ++...||=+..++|--+.+-..
T Consensus 168 ~~VrLCDi~---SGs~sH~LsGHr~--~vlaV~Wsp~~e~vLatgsa-------Dg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 168 VQVRLCDIA---SGSFSHTLSGHRD--GVLAVEWSPSSEWVLATGSA-------DGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred CcEEEEecc---CCcceeeeccccC--ceEEEEeccCceeEEEecCC-------CceEEEEEeecccceeEEeecccCcc
Confidence 346788998 3555567765444 48899999999999998765 4556666444333322222111
Q ss_pred -----CCccccccccceEEecCCcEEEEE
Q 007620 81 -----PDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 81 -----~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.....++.+..++|+.||+.++..
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred Cccccccccccceeeeeeecccchhhhhc
Confidence 111223456789999999987764
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.86 E-value=69 Score=34.70 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=22.2
Q ss_pred ceEEEEcC-CCC-eeecC-CCCeeeeeEECCCCCeEEEE
Q 007620 157 AQLVLGSL-DGT-AKDFG-TPAVYTAVEPSPDQKYVLIT 192 (595)
Q Consensus 157 ~~l~~~d~-~g~-~~~lt-~~~~~~~~~~SpDg~~l~~~ 192 (595)
++|+++|. +|. ...|- ..+.+..++||.||++.+-.
T Consensus 33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASG 71 (1081)
T ss_pred CEEEEEeCCCcccccccccccceEEEEEEccCCceeccC
Confidence 35677777 663 44443 23344578899999876544
No 225
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=83.78 E-value=2.3 Score=42.53 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=44.0
Q ss_pred ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCcee
Q 007620 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (595)
Q Consensus 488 ~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~ 567 (595)
...+|..+...+|.|.. ++ ..+.|+|||+|+|-| ++|+.... ...-..++++.||.|+. +.|
T Consensus 57 ~~~~~~~~~~~~y~p~~-~~--~~~~p~vly~HGGg~--------~~g~~~~~---~~~~~~~~~~~g~~vv~----vdY 118 (312)
T COG0657 57 AGPSGDGVPVRVYRPDR-KA--AATAPVVLYLHGGGW--------VLGSLRTH---DALVARLAAAAGAVVVS----VDY 118 (312)
T ss_pred cCCCCCceeEEEECCCC-CC--CCCCcEEEEEeCCee--------eecChhhh---HHHHHHHHHHcCCEEEe----cCC
Confidence 45566778899999921 22 224599999886522 33333211 11224688889999999 555
Q ss_pred ecCCCCCCchhhHh
Q 007620 568 GEGDKLPNDRYLIL 581 (595)
Q Consensus 568 ~~~~~~~~~~~~~~ 581 (595)
+-.-..+.+....+
T Consensus 119 rlaPe~~~p~~~~d 132 (312)
T COG0657 119 RLAPEHPFPAALED 132 (312)
T ss_pred CCCCCCCCCchHHH
Confidence 54322233333333
No 226
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=83.59 E-value=1.2 Score=41.75 Aligned_cols=51 Identities=25% Similarity=0.436 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhc-cCeEEEeCCC
Q 007620 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPS 563 (595)
Q Consensus 496 ~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~-~GY~Vl~~~~ 563 (595)
...||.|++... .++|+||..|+.. +.+..|..... ..-+|. +||+|+. |+
T Consensus 2 ~Y~lYvP~~~~~---~~~PLVv~LHG~~-----------~~a~~~~~~s~--~~~lAd~~Gfivvy-P~ 53 (220)
T PF10503_consen 2 SYRLYVPPGAPR---GPVPLVVVLHGCG-----------QSAEDFAAGSG--WNALADREGFIVVY-PE 53 (220)
T ss_pred cEEEecCCCCCC---CCCCEEEEeCCCC-----------CCHHHHHhhcC--HHHHhhcCCeEEEc-cc
Confidence 467999998653 2569999988531 12222322111 234454 5999998 54
No 227
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=83.42 E-value=35 Score=34.83 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=23.0
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
-+..++||.+|-||+....+ ..+.+||+..
T Consensus 391 ~vk~i~FsENGY~Lat~add-------------~~V~lwDLRK 420 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADD-------------GSVKLWDLRK 420 (506)
T ss_pred ceeEEEeccCceEEEEEecC-------------CeEEEEEehh
Confidence 45689999999999888753 2488888753
No 228
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=83.25 E-value=75 Score=34.67 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=24.8
Q ss_pred eEEEEcC-CCCeeecCCCCeeeeeEECCCCCeEEEEEccc
Q 007620 158 QLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHR 196 (595)
Q Consensus 158 ~l~~~d~-~g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~ 196 (595)
.|.+.|+ +|+.-.-........+.|.+|++.++|++.+.
T Consensus 156 ~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~ 195 (682)
T COG1770 156 TLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDE 195 (682)
T ss_pred EEEEEecccccccchhhcccccceEEecCCCeEEEEEEcC
Confidence 4566677 66432211112234789999999999998653
No 229
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.22 E-value=9.3 Score=36.72 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=39.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+..-+|||||++|+-+- .+- ..+..-|=++|...+ -.++-..+.- +-+...+.|.+||+.|+..
T Consensus 115 fyGHGvfs~dG~~LYATE-ndf----d~~rGViGvYd~r~~-fqrvgE~~t~--GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 115 FYGHGVFSPDGRLLYATE-NDF----DPNRGVIGVYDAREG-FQRVGEFSTH--GIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred eecccccCCCCcEEEeec-CCC----CCCCceEEEEecccc-cceecccccC--CcCcceeEEecCCcEEEEe
Confidence 566889999998765543 221 134456777887633 2333222221 1123488999999998885
No 230
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=82.01 E-value=9.8 Score=39.64 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=40.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC-ceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|.|+.+.|.|+. ..++++-+++-. ++.+.-... +.+-.+.|++.+..|+-.
T Consensus 147 ~v~c~~W~p~S~~vl~c~-----------g~h~~IKpL~~n~k~i~WkAHD-----GiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-----------GGHISIKPLAANSKIIRWRAHD-----GLVLSLSWSTQSNIIASG 204 (737)
T ss_pred eeEEEEECCCCCceEEec-----------CCeEEEeecccccceeEEeccC-----cEEEEeecCccccceeec
Confidence 578899999999999985 368888888654 334432222 134588999988877653
No 231
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=81.91 E-value=38 Score=33.06 Aligned_cols=40 Identities=10% Similarity=0.286 Sum_probs=29.6
Q ss_pred ecceEEEEcCCCCe-eecCCC----CeeeeeEECCCCCeEEEEEc
Q 007620 155 TTAQLVLGSLDGTA-KDFGTP----AVYTAVEPSPDQKYVLITSM 194 (595)
Q Consensus 155 ~~~~l~~~d~~g~~-~~lt~~----~~~~~~~~SpDg~~l~~~~~ 194 (595)
+.+.+|++++.|++ +..+.+ +.+.....||.|.+|++...
T Consensus 413 rsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE 457 (508)
T ss_pred CCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence 45679999998864 455543 24557889999999998864
No 232
>PRK10749 lysophospholipase L2; Provisional
Probab=81.29 E-value=3.1 Score=42.01 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=43.5
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..|...|...||.+|+.....|. .+ + |+||.+|+ -... ...+......|+++||.|+.
T Consensus 29 ~~~~~~~~~~~g~~l~~~~~~~~--~~-~----~~vll~HG--------------~~~~-~~~y~~~~~~l~~~g~~v~~ 86 (330)
T PRK10749 29 QREEAEFTGVDDIPIRFVRFRAP--HH-D----RVVVICPG--------------RIES-YVKYAELAYDLFHLGYDVLI 86 (330)
T ss_pred hccceEEEcCCCCEEEEEEccCC--CC-C----cEEEEECC--------------ccch-HHHHHHHHHHHHHCCCeEEE
Confidence 56778888899999999998774 21 1 56676553 1110 00111123578899999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
+|.+..|.
T Consensus 87 -~D~~G~G~ 94 (330)
T PRK10749 87 -IDHRGQGR 94 (330)
T ss_pred -EcCCCCCC
Confidence 88887774
No 233
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=81.26 E-value=52 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=22.4
Q ss_pred EcC-CCC-eeecCCCCeeeeeEECCCCCeEEEEEcc
Q 007620 162 GSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMH 195 (595)
Q Consensus 162 ~d~-~g~-~~~lt~~~~~~~~~~SpDg~~l~~~~~~ 195 (595)
+|+ +|+ .-.+..+..+..+.||++|..++++...
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehh
Confidence 444 553 3333344456688999999999998754
No 234
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.12 E-value=55 Score=31.07 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=50.0
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|+|+++.+ .+..+....+.-.......+||+.-+.++++... ++.-+||-.... ..+.+..++..
T Consensus 39 ~L~ile~~~---~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G-------DGSLrl~d~~~~-s~Pi~~~kEH~--- 104 (311)
T KOG0277|consen 39 RLFILEVTD---PKGIQECQSYDTEDGLFDVAWSENHENQVIAASG-------DGSLRLFDLTMP-SKPIHKFKEHK--- 104 (311)
T ss_pred eEEEEecCC---CCCeEEEEeeecccceeEeeecCCCcceEEEEec-------CceEEEeccCCC-CcchhHHHhhh---
Confidence 589999863 3333333333333357789999999988887763 566777742211 22333333221
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
.++-++.|.+-.+.++.+
T Consensus 105 -~EV~Svdwn~~~r~~~lt 122 (311)
T KOG0277|consen 105 -REVYSVDWNTVRRRIFLT 122 (311)
T ss_pred -hheEEeccccccceeEEe
Confidence 145578898877766665
No 235
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=79.97 E-value=70 Score=32.15 Aligned_cols=83 Identities=13% Similarity=0.039 Sum_probs=48.0
Q ss_pred cceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEE--Eee--ccccccc
Q 007620 275 RDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV--LFD--RVFENVY 350 (595)
Q Consensus 275 ~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~--l~~--~~~~~~~ 350 (595)
.+.|.+||+ .+|+....++ ....+..+..+|....|+..... . +|.++|+.++++.... +.. ..+..
T Consensus 280 DHTIk~WDl--etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssd--r--~irl~DPR~~~gs~v~~s~~gH~nwVss-- 350 (423)
T KOG0313|consen 280 DHTIKVWDL--ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSD--R--HIRLWDPRTGDGSVVSQSLIGHKNWVSS-- 350 (423)
T ss_pred cceEEEEEe--ecccceeeee-cCcceeEeecccccceeeecCCC--C--ceeecCCCCCCCceeEEeeecchhhhhh--
Confidence 456788887 3443333333 23345667788877766665421 2 6778898886433221 122 22333
Q ss_pred CCCCCCCeeeCCCCCEEEEEeee
Q 007620 351 SDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 351 ~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
+.|+|...+.++....
T Consensus 351 -------vkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 351 -------VKWSPTNEFQLVSGSY 366 (423)
T ss_pred -------eecCCCCceEEEEEec
Confidence 7899988877776543
No 236
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=79.92 E-value=4.1 Score=42.24 Aligned_cols=67 Identities=10% Similarity=-0.093 Sum_probs=44.8
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeC
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~ 561 (595)
.....+...+|..+..+++.|..-. +.|+||++|+ ...... .+......|+++||.|+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~~-----~~~~Vl~lHG--------------~~~~~~-~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAGE-----MRGILIIIHG--------------LNEHSG-RYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCCC-----CceEEEEECC--------------chHHHH-HHHHHHHHHHHCCCEEEE-
Confidence 4556677889999999999996411 2378888763 211100 011234688899999999
Q ss_pred CCCceeec
Q 007620 562 PSIPIIGE 569 (595)
Q Consensus 562 ~~~~~~~~ 569 (595)
+|.+..|.
T Consensus 169 ~D~rGhG~ 176 (395)
T PLN02652 169 MDWIGHGG 176 (395)
T ss_pred eCCCCCCC
Confidence 88887764
No 237
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=78.24 E-value=55 Score=32.11 Aligned_cols=101 Identities=13% Similarity=0.212 Sum_probs=54.5
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCee
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~ 256 (595)
..-+|++|+..|++..++ .+++++...+... +.+..+... ++ ....+.|+|....
T Consensus 14 tchAwn~drt~iAv~~~~-------------~evhiy~~~~~~~w~~~htls~H-d~---------~vtgvdWap~snr- 69 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNN-------------HEVHIYSMLGADLWEPAHTLSEH-DK---------IVTGVDWAPKSNR- 69 (361)
T ss_pred eeeeecCCCceEEeccCC-------------ceEEEEEecCCCCceeceehhhh-Cc---------ceeEEeecCCCCc-
Confidence 456899999999988653 3677887665542 222111100 00 1234778877653
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee---ccccCccccceeecCCCcEEEEE
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LHKLDLRFRSVSWCDDSLALVNE 316 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~---l~~~~~~~~~~~wspDg~~l~~~ 316 (595)
|.-.. .| ...|++.. -+|++.+. |.+.......+.|||.+..|+..
T Consensus 70 Ivtcs-~d-----------rnayVw~~--~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 70 IVTCS-HD-----------RNAYVWTQ--PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred eeEcc-CC-----------CCcccccc--CCCCeeccceeEEEeccceeeEeecCcCceEEec
Confidence 33321 11 12233332 13445443 33455667889999997765543
No 238
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=78.09 E-value=46 Score=38.63 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.1
Q ss_pred cccceEEccCCCEEEEEEe
Q 007620 32 KINFVSWSPDGKRIAFSVR 50 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~ 50 (595)
.+...+||||++.+|++..
T Consensus 111 GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 111 GISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEeecCCCcEEEEEeC
Confidence 4899999999999999874
No 239
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=78.02 E-value=7.4 Score=30.58 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=29.6
Q ss_pred ecceEEEEcC-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcc
Q 007620 155 TTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMH 195 (595)
Q Consensus 155 ~~~~l~~~d~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~ 195 (595)
..++|+.+|+ +++.+.|..+- +...++.|||+++|+++...
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 3678999999 56666665543 44589999999999999764
No 240
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.68 E-value=43 Score=33.41 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=34.8
Q ss_pred eEEEEcC-CCC-e-eecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE
Q 007620 158 QLVLGSL-DGT-A-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (595)
Q Consensus 158 ~l~~~d~-~g~-~-~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 222 (595)
.|-.+|+ .|. + +.+.....+.+++|||-|++|+-.+.+ ..|.+||+..+...
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD-------------ktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD-------------KTLRVWDLKNLQCM 369 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecC-------------CcEEEEEeccceee
Confidence 3445566 452 2 233445577899999999999877653 36889998866543
No 241
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=77.48 E-value=71 Score=31.36 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=16.3
Q ss_pred eeeeeEECCCCCeEEEEEcc
Q 007620 176 VYTAVEPSPDQKYVLITSMH 195 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~ 195 (595)
.+-.++||||+.+|++++..
T Consensus 228 ~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred eEEEEEeCCCccEEEEEcCC
Confidence 34478999999999999753
No 242
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=77.39 E-value=38 Score=33.92 Aligned_cols=82 Identities=20% Similarity=0.361 Sum_probs=50.7
Q ss_pred eeeEEEecCCCCCCC---CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC--ceEeccc
Q 007620 5 TGIGIHRLLPDDSLG---PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAKPLFE 79 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g---~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g--~~~~lt~ 79 (595)
.+|++.-.+. ++ ..+++++ ....+...+|||.-+-+.++.+. ++.-.|| |+..+ ++...++
T Consensus 234 ~~I~lw~~~~---g~W~vd~~Pf~g--H~~SVEDLqWSptE~~vfaScS~-------DgsIrIW--DiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 234 KGIHLWEPST---GSWKVDQRPFTG--HTKSVEDLQWSPTEDGVFASCSC-------DGSIRIW--DIRSGPKKAAVSTK 299 (440)
T ss_pred cceEeeeecc---CceeecCccccc--cccchhhhccCCccCceEEeeec-------CceEEEE--EecCCCccceeEee
Confidence 4567776662 22 3456664 33468899999999888887765 4455566 66554 3333332
Q ss_pred CCCccccccccceEEecCCcEEEEE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.. +..+.-+.|+-+-..|++.
T Consensus 300 Ah----~sDVNVISWnr~~~lLasG 320 (440)
T KOG0302|consen 300 AH----NSDVNVISWNRREPLLASG 320 (440)
T ss_pred cc----CCceeeEEccCCcceeeec
Confidence 21 2356788999776666663
No 243
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=77.33 E-value=22 Score=36.71 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=35.2
Q ss_pred cccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeeccccccc------------CCCCCCCeeeCCCCCEE
Q 007620 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVY------------SDPGSPMMTRTSTGTNV 367 (595)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~dg~~l 367 (595)
-++.+..|-|.+.|++..|.. + .+..+|++.. ..|+++-.-.+...+ ...|-.+++.|-||++|
T Consensus 313 LitDI~iSlDDrfLYvs~W~~-G--dvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRl 388 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLH-G--DVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRL 388 (461)
T ss_dssp ----EEE-TTS-EEEEEETTT-T--EEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEE
T ss_pred ceEeEEEccCCCEEEEEcccC-C--cEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEE
Confidence 356778899999888877643 3 7888898775 467766321111111 01122578999999999
Q ss_pred EEEe
Q 007620 368 IAKI 371 (595)
Q Consensus 368 ~~~~ 371 (595)
|++.
T Consensus 389 YvTn 392 (461)
T PF05694_consen 389 YVTN 392 (461)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 9985
No 244
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=77.00 E-value=2.3 Score=40.78 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=28.5
Q ss_pred EEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCC
Q 007620 498 TLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (595)
Q Consensus 498 ~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (595)
.++.|.. +| .| |+||+.|+ -. -.+.++..-.+-+|+.||+|++ +++
T Consensus 7 ~v~~P~~--~g-~y--PVv~f~~G--------------~~-~~~s~Ys~ll~hvAShGyIVV~-~d~ 52 (259)
T PF12740_consen 7 LVYYPSS--AG-TY--PVVLFLHG--------------FL-LINSWYSQLLEHVASHGYIVVA-PDL 52 (259)
T ss_pred EEEecCC--CC-Cc--CEEEEeCC--------------cC-CCHHHHHHHHHHHHhCceEEEE-ecc
Confidence 4677875 33 47 99998653 11 1111111235789999999999 663
No 245
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=76.77 E-value=4.7 Score=43.33 Aligned_cols=28 Identities=21% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCCCCCCcEEEEeccCCc
Q 007620 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDY 524 (595)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~ 524 (595)
+.--++.|.+..+++ ++|||||+|+|.|
T Consensus 79 l~l~i~~p~~~~~~~--~~pv~v~ihGG~~ 106 (493)
T cd00312 79 LYLNVYTPKNTKPGN--SLPVMVWIHGGGF 106 (493)
T ss_pred CeEEEEeCCCCCCCC--CCCEEEEEcCCcc
Confidence 455677787654444 4599999886543
No 246
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=75.94 E-value=2 Score=40.74 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=31.3
Q ss_pred EEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCc
Q 007620 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (595)
Q Consensus 494 ~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (595)
+.+..++.|.. +| .| |+|++.|+- .-++.++-.-.+..|+.||+|+. |++-
T Consensus 32 PkpLlI~tP~~--~G-~y--PVilF~HG~---------------~l~ns~Ys~lL~HIASHGfIVVA-PQl~ 82 (307)
T PF07224_consen 32 PKPLLIVTPSE--AG-TY--PVILFLHGF---------------NLYNSFYSQLLAHIASHGFIVVA-PQLY 82 (307)
T ss_pred CCCeEEecCCc--CC-Cc--cEEEEeech---------------hhhhHHHHHHHHHHhhcCeEEEe-chhh
Confidence 34556667763 33 57 999997631 11222222235789999999999 7543
No 247
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=74.89 E-value=1.1e+02 Score=32.88 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=35.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
.+...+..|.|++||--+. ++...|| .+.+|...+.+...+ .+.++.|+|.+..
T Consensus 402 ~Vr~iSvdp~G~wlasGsd--------DGtvriW--Ei~TgRcvr~~~~d~-----~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSD--------DGTVRIW--EIATGRCVRTVQFDS-----EIRSVAWNPLSDL 455 (733)
T ss_pred eEEEEEecCCcceeeecCC--------CCcEEEE--EeecceEEEEEeecc-----eeEEEEecCCCCc
Confidence 4667788898988765432 4556666 556776444433333 5779999998874
No 248
>PRK13613 lipoprotein LpqB; Provisional
Probab=74.62 E-value=1.4e+02 Score=32.85 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=35.1
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-----EecccCCCccccccccceEEecCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNS 98 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-----~~lt~~~~~~~~~~~~~~~Wspdg 98 (595)
....+..|+||+.+|++.. ....|++-++.++.. +.+.... ....+.|..+|
T Consensus 364 ~~~s~avS~~g~~~A~v~~---------~~~~l~vg~~~~~~~~~~~~~~~~~~~------~Lt~PS~d~~g 420 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA---------DGDSVYVGSLTPGASIGVHSWGVTADG------RLTSPSWDGRG 420 (599)
T ss_pred CccceEEcCCCceEEEEcC---------CCcEEEEeccCCCCccccccceeeccC------cccCCcCcCCC
Confidence 4668899999999999853 246888877644432 2232211 35688898888
No 249
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=74.43 E-value=4.6 Score=39.78 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=36.9
Q ss_pred cEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCC-chhhHhhhc
Q 007620 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRYLILSYL 584 (595)
Q Consensus 514 P~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~-~~~~~~~~~ 584 (595)
|+|+..| |-|..|..+. +..-.||++||.|++ ||+..+|+-+.-.+ +.|+.....
T Consensus 45 P~illlH--------------GfPe~wyswr-~q~~~la~~~~rviA-~DlrGyG~Sd~P~~~~~Yt~~~l~ 100 (322)
T KOG4178|consen 45 PIVLLLH--------------GFPESWYSWR-HQIPGLASRGYRVIA-PDLRGYGFSDAPPHISEYTIDELV 100 (322)
T ss_pred CEEEEEc--------------cCCccchhhh-hhhhhhhhcceEEEe-cCCCCCCCCCCCCCcceeeHHHHH
Confidence 8888854 6676443221 222489999999999 99999997554444 566655443
No 250
>PRK13615 lipoprotein LpqB; Provisional
Probab=74.33 E-value=80 Score=34.29 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=32.5
Q ss_pred cceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCC
Q 007620 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (595)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg 98 (595)
..+..|+||+.+|++.. ...|++-... +..+.+.... ....+.|.++|
T Consensus 337 ~s~avS~dg~~~A~v~~----------~~~l~vg~~~-~~~~~~~~~~------~Lt~PS~d~~g 384 (557)
T PRK13615 337 DAATLSADGRQAAVRNA----------SGVWSVGDGD-RDAVLLDTRP------GLVAPSLDAQG 384 (557)
T ss_pred ccceEcCCCceEEEEcC----------CceEEEecCC-CcceeeccCC------ccccCcCcCCC
Confidence 67899999999999842 2356665443 4555553322 35688898888
No 251
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=72.05 E-value=30 Score=33.31 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=33.0
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC-----ceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-----EAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-----~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
....++||+.||.+.. +.|-+...+.. ..-++-+++.. ....++||||+..|++.
T Consensus 2 ~~~~~~~Gk~lAi~qd-----------~~iEiRsa~Ddf~si~~kcqVpkD~~P----QWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAILQD-----------QCIEIRSAKDDFSSIIGKCQVPKDPNP----QWRKLAWSPDCTLLAYA 61 (282)
T ss_pred ceeecCCCcEEEEEec-----------cEEEEEeccCCchheeEEEecCCCCCc----hheEEEECCCCcEEEEE
Confidence 3567899999999864 23333332221 11234322221 24578999999999996
No 252
>PRK13615 lipoprotein LpqB; Provisional
Probab=71.69 E-value=51 Score=35.73 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=43.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEE--ECCCCceEec-ccCCCccc-cccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIA--DAETGEAKPL-FESPDICL-NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~--d~~~g~~~~l-t~~~~~~~-~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+.|+||.++|++... .+..+|++. -..++.++.| +....... ...+.++.|..+++.++..
T Consensus 418 ~I~~lrvSrDG~R~Avi~~~-------~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 418 RVVSLEVARDGARVLVQLET-------GAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred eeEEEEeCCCccEEEEEEec-------CCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 58899999999999999864 234566653 3345666777 54322110 1134588999999955553
No 253
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=71.41 E-value=9.9 Score=40.83 Aligned_cols=85 Identities=11% Similarity=0.155 Sum_probs=44.2
Q ss_pred eeeeEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 4 FTGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
.+-|+|.+-. .=... .|..+. -.+....|||||++|+-+++ +..-.||-.--......+....+.
T Consensus 551 hAvI~lw~t~----~W~~~~~L~~Hs--LTVT~l~FSpdg~~LLsvsR--------DRt~sl~~~~~~~~~e~~fa~~k~ 616 (764)
T KOG1063|consen 551 HAVIRLWNTA----NWLQVQELEGHS--LTVTRLAFSPDGRYLLSVSR--------DRTVSLYEVQEDIKDEFRFACLKA 616 (764)
T ss_pred ceEEEEEecc----chhhhheecccc--eEEEEEEECCCCcEEEEeec--------CceEEeeeeecccchhhhhccccc
Confidence 3556777654 22222 233222 24889999999999988764 445667754211111122111111
Q ss_pred ccccccccceEEecCCcEEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
. ...+=+..|+||++.++-.
T Consensus 617 H--tRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 617 H--TRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred c--ceEEEEcccCcccceeEEe
Confidence 0 0012267899999984433
No 254
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=71.40 E-value=53 Score=33.49 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=46.3
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEcc-CCCE--------EEEEEecccccccCCCceEEEEEECCCCceE
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSP-DGKR--------IAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SP-DG~~--------laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (595)
+|||+.+|+ +.+-.||. +.+++ || .|-+ |.|-.-.+. ....-..++||+.|+++=+..
T Consensus 154 kD~W~fd~~----trkweql~-~~g~P-------S~RSGHRMvawK~~lilFGGFhd~-nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 154 KDLWLFDLK----TRKWEQLE-FGGGP-------SPRSGHRMVAWKRQLILFGGFHDS-NRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred hheeeeeec----cchheeec-cCCCC-------CCCccceeEEeeeeEEEEcceecC-CCceEEeeeeEEEeccceeee
Confidence 689999998 67767776 33332 22 2333 222211111 111234578999999987666
Q ss_pred ecccCCCccccccccc--eEEecCCcEEEEE
Q 007620 76 PLFESPDICLNAVFGS--FVWVNNSTLLIFT 104 (595)
Q Consensus 76 ~lt~~~~~~~~~~~~~--~~Wspdg~~l~~~ 104 (595)
.|.....+ ...-+. +.-+|+|.++++.
T Consensus 221 Klepsga~--PtpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 221 KLEPSGAG--PTPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred eccCCCCC--CCCCCcceEEecCCCcEEEEc
Confidence 66432111 112233 4455889987774
No 255
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=71.28 E-value=1e+02 Score=29.87 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=35.6
Q ss_pred cccceEEccCCCEEEEEEecc-cccccCCCceEEEEEECCCCc-----eEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVD-EEDNVSSCKLRVWIADAETGE-----AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~-~~~~~~~~~~~L~v~d~~~g~-----~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+....=||-.++|.-+.... ...+. -....||.++-.-+. ...+.......+ +.+..+.|-|++..|+.+
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~v-l~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav-g~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGV-LTGAAIWQIPEPLGQSNSSTLECVASLDTEAV-GKINCVEWEPNSDKLASM 141 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcc-eeeEEEEecccccCccccchhhHhhcCCHHHh-CceeeEEEcCCCCeeEEe
Confidence 466677788666555444321 10000 012457776544333 122221121111 135678999999988886
No 256
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=71.12 E-value=32 Score=33.63 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=54.1
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcccc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (595)
|.|.||.-. +-+...-|..+. ..+....++-+|..||-.+. .++=|-+.|..+|+..+=. ..+.-.
T Consensus 161 vQi~dL~~~-~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaSt---------kGTLIRIFdt~~g~~l~E~--RRG~d~ 226 (346)
T KOG2111|consen 161 VQIVDLAST-KPNAPSIINAHD--SDIACVALNLQGTLVATAST---------KGTLIRIFDTEDGTLLQEL--RRGVDR 226 (346)
T ss_pred EEEEEhhhc-CcCCceEEEccc--CceeEEEEcCCccEEEEecc---------CcEEEEEEEcCCCcEeeee--ecCCch
Confidence 567777621 111234444323 24788899999999988764 3577888899888743321 222111
Q ss_pred ccccceEEecCCcEEEEEec
Q 007620 87 AVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 87 ~~~~~~~Wspdg~~l~~~~~ 106 (595)
+.+-.+.+|||+.+|+..+.
T Consensus 227 A~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred heEEEEEeCCCccEEEEEcC
Confidence 23447899999999999743
No 257
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=70.67 E-value=1.3e+02 Score=30.91 Aligned_cols=205 Identities=12% Similarity=0.015 Sum_probs=106.3
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
......+|+|++++... . ....+.++|.++.....-..... ....+.++++++.++..-...
T Consensus 76 p~~i~v~~~~~~vyv~~-~--------~~~~v~vid~~~~~~~~~~~vG~-----~P~~~~~~~~~~~vYV~n~~~---- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTT-G--------DSNTVSVIDTATNTVLGSIPVGL-----GPVGLAVDPDGKYVYVANAGN---- 137 (381)
T ss_pred ccceeeCCCCCeEEEec-C--------CCCeEEEEcCcccceeeEeeecc-----CCceEEECCCCCEEEEEeccc----
Confidence 45668888888765443 2 24678888865544322211111 234788999999888862100
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee-ecCCCCeeeeeEECCCCCeEE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVL 190 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt~~~~~~~~~~SpDg~~l~ 190 (595)
....+.++|. ++... .+..+.....++++|+|++++
T Consensus 138 ------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vy 175 (381)
T COG3391 138 ------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVY 175 (381)
T ss_pred ------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEE
Confidence 0234555655 33222 122222225789999999998
Q ss_pred EEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCccc
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~ 270 (595)
+.... ...+.++|..+....+ ...... ...-.++....+++||.. +|..... .
T Consensus 176 v~~~~------------~~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~-~yV~~~~-~----- 228 (381)
T COG3391 176 VTNSD------------DNTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNR-VYVANDG-S----- 228 (381)
T ss_pred EEecC------------CCeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCE-EEEEecc-C-----
Confidence 88622 2368888877665553 211000 000122346788999984 4433111 0
Q ss_pred ccCCcceEEeccCCCCCCCCceec--cccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 271 EVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 271 ~~~~~~~~~~~d~~~~~g~~~~~l--~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
....+..++. ..+..... ............+|+|..++..... ...+..+|..+
T Consensus 229 ---~~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~ 284 (381)
T COG3391 229 ---GSNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGAT 284 (381)
T ss_pred ---CCceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCC
Confidence 0123444454 21222221 1111133456778999865544211 23678888766
No 258
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=70.36 E-value=90 Score=31.97 Aligned_cols=36 Identities=8% Similarity=-0.112 Sum_probs=23.8
Q ss_pred cceEEEEcCCC-CeeecCCCC-eeeeeEECCCCCeEEEE
Q 007620 156 TAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYVLIT 192 (595)
Q Consensus 156 ~~~l~~~d~~g-~~~~lt~~~-~~~~~~~SpDg~~l~~~ 192 (595)
...+++++.+| +.+.+..+- ....++|+|+|+. +++
T Consensus 163 ~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l-~~t 200 (367)
T TIGR02604 163 GGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDV-FFC 200 (367)
T ss_pred CceEEEEecCCCeEEEEecCcCCCccceECCCCCE-EEE
Confidence 35789999966 555555442 2347899999865 444
No 259
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=70.32 E-value=88 Score=32.04 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=47.2
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
-|.|+|+... .....+.+.. ....+...+|+|=+..|..+.+. + ..|.++|+..-.....+....
T Consensus 251 ~L~iwD~R~~-~~~~~~~~~a--h~~~vn~~~fnp~~~~ilAT~S~-------D--~tV~LwDlRnL~~~lh~~e~H--- 315 (422)
T KOG0264|consen 251 KLMIWDTRSN-TSKPSHSVKA--HSAEVNCVAFNPFNEFILATGSA-------D--KTVALWDLRNLNKPLHTFEGH--- 315 (422)
T ss_pred eEEEEEcCCC-CCCCcccccc--cCCceeEEEeCCCCCceEEeccC-------C--CcEEEeechhcccCceeccCC---
Confidence 4678888731 1222233332 23358889999987777666543 3 345555776533322222211
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
...+..+.|||+-+.|+-.
T Consensus 316 ~dev~~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 316 EDEVFQVEWSPHNETVLAS 334 (422)
T ss_pred CcceEEEEeCCCCCceeEe
Confidence 1256689999998866554
No 260
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=69.32 E-value=13 Score=38.71 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=28.7
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
..+.++|.+. =|.+...+||+|++|+ .++| |+|++.++
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~~~--PvlyllDG 217 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-PEER--PLAILLDG 217 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-CCCC--CEEEEEEC
Confidence 4566777664 5778999999999987 3445 99998653
No 261
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=67.43 E-value=58 Score=31.53 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=36.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCC-ccccccccceEEec--CCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPD-ICLNAVFGSFVWVN--NSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~-~~~~~~~~~~~Wsp--dg~~l~~~ 104 (595)
.+....|-|++.+||-+.. ++|.+++++.+.. .+....+. ......+.+-.||| ||..++.+
T Consensus 125 ~i~cvew~Pns~klasm~d-----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD-----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred ceeeEEEcCCCCeeEEecc-----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 4677899999999998762 5566667765543 11111111 00011234668997 67776665
No 262
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=67.19 E-value=5 Score=43.49 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
|.==++.|.+...+. ++||+||+|+|-|. .|+.. ...+....+++.++.+|+.
T Consensus 109 L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~--------~G~~~---~~~~~~~~~~~~~~vivVt 161 (535)
T PF00135_consen 109 LYLNIYTPSNASSNS--KLPVMVWIHGGGFM--------FGSGS---FPPYDGASLAASKDVIVVT 161 (535)
T ss_dssp -EEEEEEETSSSSTT--SEEEEEEE--STTT--------SSCTT---SGGGHTHHHHHHHTSEEEE
T ss_pred HHHhhhhcccccccc--ccceEEEeeccccc--------CCCcc---cccccccccccCCCEEEEE
Confidence 455577798865433 56999999876443 23221 0111224678889999998
No 263
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.94 E-value=44 Score=36.67 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=50.8
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCC-cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..|-++||. +.+..++++.+.+.. .+....|++---.|.....+ ++.-.+| |+...+.+..+.....
T Consensus 110 G~i~vWdln---k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ-------Dg~vK~~--DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 110 GVISVWDLN---KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ-------DGTVKCW--DLRSKKSKSTFRSNSE 177 (839)
T ss_pred CcEEEEecC---ccccchhhhHhhhhccceeeeeeccCCccEEEecCC-------CceEEEE--eeecccccccccccch
Confidence 456778886 345556655444433 47788999988888777654 4555555 6665555555433211
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+....|+|.-...++.
T Consensus 178 ----SiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 178 ----SIRDVKFSPGYGNKFAS 194 (839)
T ss_pred ----hhhceeeccCCCceEEE
Confidence 35578899865444443
No 264
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=66.72 E-value=1.6e+02 Score=30.30 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=36.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+....|.||| |.|.... ...+|-++|++.+. .++.++. ..+.+..+.|+.+|=+|+..
T Consensus 349 ~~ts~~fHpDg--Lifgtgt--------~d~~vkiwdlks~~--~~a~Fpg--ht~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 349 EYTSAAFHPDG--LIFGTGT--------PDGVVKIWDLKSQT--NVAKFPG--HTGPVKAISFSENGYWLATA 407 (506)
T ss_pred eeEEeeEcCCc--eEEeccC--------CCceEEEEEcCCcc--ccccCCC--CCCceeEEEeccCceEEEEE
Confidence 46778899999 4454332 23566667887665 3333332 12256788888888777765
No 265
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=66.29 E-value=1.4e+02 Score=29.34 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=39.9
Q ss_pred CCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+...+...+|.|.|+.|+.-. ...-+.++|+.+-+.-.-.. ++....+.+....+|+.|++ +.+
T Consensus 215 d~~~vrsiSfHPsGefllvgT----------dHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~l-YvT 278 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGT----------DHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSL-YVT 278 (430)
T ss_pred ccceeeeEeecCCCceEEEec----------CCCceeEEeccceeEeeecC-cccccccceeEEEecCCccE-EEE
Confidence 334577889999999887754 24667777887655433222 22222224567888888884 443
No 266
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=65.51 E-value=14 Score=37.21 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=37.0
Q ss_pred CcEEEEEEEcCCCCCCC-CCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCce
Q 007620 492 GVPLTATLYLPPGYDQS-KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 492 G~~i~g~l~~P~~~~~~-k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
+.++.=++++|...... -.|++|+||+.||- ||. +..+ -|-.+.||+.||+|.. +.=|.
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~-------------Gs~-~~~f-~~~A~~lAs~Gf~Va~-~~hpg 108 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGS-------------GSY-VTGF-AWLAEHLASYGFVVAA-PDHPG 108 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCC-------------CCC-ccch-hhhHHHHhhCceEEEe-ccCCC
Confidence 45677778888664320 12678999996641 222 2222 1346899999999998 44443
No 267
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=64.86 E-value=64 Score=26.42 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=41.6
Q ss_pred ccceEEccCCC-EEEEEEecccccccC----CCceEEEEEECCCCceEec-----ccC-CCccccccccceEEecCCcEE
Q 007620 33 INFVSWSPDGK-RIAFSVRVDEEDNVS----SCKLRVWIADAETGEAKPL-----FES-PDICLNAVFGSFVWVNNSTLL 101 (595)
Q Consensus 33 ~~~~~~SPDG~-~laf~~~~~~~~~~~----~~~~~L~v~d~~~g~~~~l-----t~~-~~~~~~~~~~~~~Wspdg~~l 101 (595)
+.-..+||... +++|+-.-...+... -.+.-+++.+-..+...-| |.. ..+.+-++-..-.|||||++|
T Consensus 3 VGvvT~sP~~~~ryvFIHGpe~pd~~w~YdfhhRrGViv~~~~~~~a~~lDA~dit~Pyt~GALRGGtHvHvfSpDG~~l 82 (122)
T PF12566_consen 3 VGVVTVSPVEPPRYVFIHGPENPDAEWQYDFHHRRGVIVSDEQPGVAINLDAMDITPPYTPGALRGGTHVHVFSPDGSWL 82 (122)
T ss_pred eeEEEeCCCCCceEEEEeCCCCCCCCCccccccceeEEEecCCCCceeecchhcccCCCCCccccCCccceEECCCCCEE
Confidence 34567899888 999987543221110 1123466655555554444 211 111222222355899999999
Q ss_pred EEEecC
Q 007620 102 IFTIPS 107 (595)
Q Consensus 102 ~~~~~~ 107 (595)
-|+..+
T Consensus 83 SFTYND 88 (122)
T PF12566_consen 83 SFTYND 88 (122)
T ss_pred EEEecc
Confidence 998654
No 268
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=64.24 E-value=1.3e+02 Score=28.17 Aligned_cols=56 Identities=20% Similarity=0.080 Sum_probs=33.1
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceE--EccCCCEEEEEEecccccccCCCceEEEEEECCCCceEec
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVS--WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~--~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (595)
-|...|+. +|+...-..+.. ....+. ..+++.+|++.. ...+|+.+|.++|+..--
T Consensus 4 ~l~~~d~~----tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~----------~~~~l~~~d~~tG~~~W~ 61 (238)
T PF13360_consen 4 TLSALDPR----TGKELWSYDLGP--GIGGPVATAVPDGGRVYVAS----------GDGNLYALDAKTGKVLWR 61 (238)
T ss_dssp EEEEEETT----TTEEEEEEECSS--SCSSEEETEEEETTEEEEEE----------TTSEEEEEETTTSEEEEE
T ss_pred EEEEEECC----CCCEEEEEECCC--CCCCccceEEEeCCEEEEEc----------CCCEEEEEECCCCCEEEE
Confidence 35667776 565544333322 244444 455677765542 247899999988875433
No 269
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=63.71 E-value=2.1e+02 Score=30.64 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=24.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG 72 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g 72 (595)
.......||||++|..+. ....+|-++|++.-
T Consensus 53 ast~ik~s~DGqY~lAtG---------~YKP~ikvydlanL 84 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATG---------TYKPQIKVYDLANL 84 (703)
T ss_pred ccceeEecCCCcEEEEec---------ccCCceEEEEcccc
Confidence 356789999999887664 36788999998743
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=63.46 E-value=1.9e+02 Score=31.90 Aligned_cols=203 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred ccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCe
Q 007620 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA 168 (595)
Q Consensus 89 ~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 168 (595)
+.++.|..||+.|..+.. +|..+.-+.+| .+||--++.|..
T Consensus 118 V~SmsWn~dG~kIcIvYe-------------DGavIVGsvdG--------------------------NRIwgKeLkg~~ 158 (1189)
T KOG2041|consen 118 VVSMSWNLDGTKICIVYE-------------DGAVIVGSVDG--------------------------NRIWGKELKGQL 158 (1189)
T ss_pred EEEEEEcCCCcEEEEEEc-------------cCCEEEEeecc--------------------------ceecchhcchhe
Q ss_pred eecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc------eEEEeccCCCCccCCcccccccc
Q 007620 169 KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK------LVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 169 ~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~------~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
...+-||+|.+.++|...+. +++++|-.|. ....+......+..|.-+.+.--
T Consensus 159 --------l~hv~ws~D~~~~Lf~~ang-------------e~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 159 --------LAHVLWSEDLEQALFKKANG-------------ETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred --------ccceeecccHHHHHhhhcCC-------------cEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEE-----EEE
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV-----NET 317 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~-----~~~ 317 (595)
........|-.+-.++.. -.+...-+... .....-.+.+....+..+.|+++|..|+ .+.
T Consensus 218 ~~g~~~~v~pdrP~lavc------------y~nGr~QiMR~---eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da 282 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVC------------YANGRMQIMRS---ENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDA 282 (1189)
T ss_pred ccCccccCCCCCCEEEEE------------EcCceehhhhh---cCCCCCeEEecccEeecceecCCCcEEEEccCcccc
Q ss_pred eecccceEEEEEeCCCCCCCcEEE--eecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEE
Q 007620 318 WYKTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 383 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~ 383 (595)
......+.+.-+.+=| .....+ .+..... ++|...|=.++..+ ...+|+
T Consensus 283 ~~~~d~n~v~Fysp~G--~i~gtlkvpg~~It~---------lsWEg~gLriA~Av------dsfiyf 333 (1189)
T KOG2041|consen 283 DEPTDSNKVHFYSPYG--HIVGTLKVPGSCITG---------LSWEGTGLRIAIAV------DSFIYF 333 (1189)
T ss_pred cCccccceEEEeccch--hheEEEecCCceeee---------eEEcCCceEEEEEe------cceEEE
No 271
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=63.42 E-value=6 Score=32.10 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=13.4
Q ss_pred eEEccCCCEEEEEEe
Q 007620 36 VSWSPDGKRIAFSVR 50 (595)
Q Consensus 36 ~~~SPDG~~laf~~~ 50 (595)
=.|||||++|.|+.+
T Consensus 73 HvfSpDG~~lSFTYN 87 (122)
T PF12566_consen 73 HVFSPDGSWLSFTYN 87 (122)
T ss_pred eEECCCCCEEEEEec
Confidence 479999999999975
No 272
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=63.04 E-value=32 Score=27.04 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=37.9
Q ss_pred ceEEccCCCEEEEEEeccccc--------ccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 35 FVSWSPDGKRIAFSVRVDEED--------NVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~--------~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
...+++|+..|+|+-+...-. -+.+....|+.+|+++++.+.|...-. -...++-|+|++.|++.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~-----fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY-----FPNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES-----SEEEEEE-TTSSEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC-----ccCeEEEcCCCCEEEEE
Confidence 356778856788876532100 012556899999999999877743211 23578999999988886
No 273
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=61.84 E-value=1.5e+02 Score=28.31 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=25.3
Q ss_pred EEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEE
Q 007620 8 GIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAF 47 (595)
Q Consensus 8 ~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf 47 (595)
.++|+. +++.++++ .......+...+-|||+.|..
T Consensus 49 ~~yD~~----tn~~rpl~-v~td~FCSgg~~L~dG~ll~t 83 (243)
T PF07250_consen 49 VEYDPN----TNTFRPLT-VQTDTFCSGGAFLPDGRLLQT 83 (243)
T ss_pred EEEecC----CCcEEecc-CCCCCcccCcCCCCCCCEEEe
Confidence 356776 78888887 344446777889999987633
No 274
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=61.31 E-value=6.4 Score=37.72 Aligned_cols=28 Identities=43% Similarity=0.678 Sum_probs=23.4
Q ss_pred CcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 492 G~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
|.++.-++++|++|+++++| |||++.|+
T Consensus 5 g~~~~~~VylP~~y~~~~~~--PvlylldG 32 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPY--PVLYLLDG 32 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTE--EEEEEESH
T ss_pred CCeEEEEEEECCCCCCCCCC--EEEEEccC
Confidence 67899999999999777756 99998653
No 275
>PRK13613 lipoprotein LpqB; Provisional
Probab=61.24 E-value=26 Score=38.34 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=42.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC---CCCceEecccCCCccc-cccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGEAKPLFESPDICL-NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~~~~lt~~~~~~~-~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+.|+||.++|++... .+..+|++.-+ ..|. +.|+....... ...+.++.|..++++++..
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~-------~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg 524 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEK-------DGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDSQLVVLG 524 (599)
T ss_pred EeEEEEECCCccEEEEEEec-------CCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCCEEEEEe
Confidence 68899999999999999865 24456665433 2344 56654321110 1135689999999965543
No 276
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=61.11 E-value=1.7e+02 Score=28.57 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=44.6
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEE--EEEecccccccCCCceEEEEEECCCCceEe---ccc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIA--FSVRVDEEDNVSSCKLRVWIADAETGEAKP---LFE 79 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~la--f~~~~~~~~~~~~~~~~L~v~d~~~g~~~~---lt~ 79 (595)
--|.|.-|. +.+++...-.++..........|.||.+-+. .++.. ...-.||.+..+.+.... |..
T Consensus 73 Nkvqiv~ld--~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-------~D~LRlWri~~ee~~~~~~~~L~~ 143 (364)
T KOG0290|consen 73 NKVQIVQLD--EDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-------SDFLRLWRIGDEESRVELQSVLNN 143 (364)
T ss_pred CeeEEEEEc--cCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-------cCeEEEEeccCcCCceehhhhhcc
Confidence 345555444 2355554443344444577889999985211 11111 245778888765443221 111
Q ss_pred CCCccccccccceEEecCCcEEEE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+.....+...+|.|..-.-.++.
T Consensus 144 ~kns~~~aPlTSFDWne~dp~~ig 167 (364)
T KOG0290|consen 144 NKNSEFCAPLTSFDWNEVDPNLIG 167 (364)
T ss_pred CcccccCCcccccccccCCcceeE
Confidence 122222345568888854433333
No 277
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.75 E-value=48 Score=36.43 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=44.4
Q ss_pred EEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCC--CceEecccCCCcccc
Q 007620 9 IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPDICLN 86 (595)
Q Consensus 9 ~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~--g~~~~lt~~~~~~~~ 86 (595)
+.||. ..+.++.+ ......+...+|||--... |.+..+ .+.-|+| |+.. .-.++++...+
T Consensus 160 ~~DlR----~~~S~~t~-~~nSESiRDV~fsp~~~~~-F~s~~d------sG~lqlW--DlRqp~r~~~k~~AH~G---- 221 (839)
T KOG0269|consen 160 CWDLR----SKKSKSTF-RSNSESIRDVKFSPGYGNK-FASIHD------SGYLQLW--DLRQPDRCEKKLTAHNG---- 221 (839)
T ss_pred EEeee----cccccccc-cccchhhhceeeccCCCce-EEEecC------CceEEEe--eccCchhHHHHhhcccC----
Confidence 44665 34444443 3344578899999954333 333221 3556666 6543 22455554443
Q ss_pred ccccceEEecCCcEEEEE
Q 007620 87 AVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 87 ~~~~~~~Wspdg~~l~~~ 104 (595)
.+..+.|+|++.+|+-.
T Consensus 222 -pV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 222 -PVLCLNWHPNREWLATG 238 (839)
T ss_pred -ceEEEeecCCCceeeec
Confidence 56689999988887764
No 278
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=60.61 E-value=6.3 Score=40.57 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=10.8
Q ss_pred hHHHhccCeEEEe
Q 007620 548 SLIFLARRFAVLA 560 (595)
Q Consensus 548 ~q~la~~GY~Vl~ 560 (595)
..-||++||+|+.
T Consensus 120 ~~eLAS~GyVV~a 132 (379)
T PF03403_consen 120 CGELASHGYVVAA 132 (379)
T ss_dssp HHHHHHTT-EEEE
T ss_pred HHHHHhCCeEEEE
Confidence 4689999999998
No 279
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=60.50 E-value=2.1e+02 Score=29.60 Aligned_cols=58 Identities=24% Similarity=0.191 Sum_probs=36.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+-..+.||||++||+-- ....|.+++..+.+..+.+....+ .+.++.+--.-..|+.
T Consensus 204 eil~~avS~Dgkylatgg----------~d~~v~Iw~~~t~ehv~~~~ghr~----~V~~L~fr~gt~~lys 261 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG----------RDRHVQIWDCDTLEHVKVFKGHRG----AVSSLAFRKGTSELYS 261 (479)
T ss_pred eeEEEEEcCCCcEEEecC----------CCceEEEecCcccchhhccccccc----ceeeeeeecCccceee
Confidence 355678999999998853 235556779889988777443221 3555555544334444
No 280
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=59.04 E-value=9.9 Score=37.63 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=54.1
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|||+.||.. -..+..+.. .....+....|||-|+-++--+ ....|-++++..|..+-+.......
T Consensus 251 ~nlY~~DmR~---l~~p~~v~~-dhvsAV~dVdfsptG~Efvsgs----------yDksIRIf~~~~~~SRdiYhtkRMq 316 (433)
T KOG0268|consen 251 HNLYTYDMRN---LSRPLNVHK-DHVSAVMDVDFSPTGQEFVSGS----------YDKSIRIFPVNHGHSRDIYHTKRMQ 316 (433)
T ss_pred ccceehhhhh---hcccchhhc-ccceeEEEeccCCCcchhcccc----------ccceEEEeecCCCcchhhhhHhhhh
Confidence 4789998873 333334431 2222466789999999754432 2345666688788877775544322
Q ss_pred ccccccceEEecCCcEEEEEe
Q 007620 85 LNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~ 105 (595)
.+-...||.|.+.|+..+
T Consensus 317 ---~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 317 ---HVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ---eeeEEEEeccccEEEecC
Confidence 355789999999887754
No 281
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=58.99 E-value=91 Score=33.38 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=24.8
Q ss_pred eEEEEcC-CCC-eeecCCC-CeeeeeEECCCCCeEEEEEcc
Q 007620 158 QLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (595)
Q Consensus 158 ~l~~~d~-~g~-~~~lt~~-~~~~~~~~SpDg~~l~~~~~~ 195 (595)
.|-++|+ .++ ++.|..+ ..+..++.+|.|..|++.+..
T Consensus 588 ~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 588 SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 3445666 343 3334333 466789999999999988754
No 282
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=58.86 E-value=2.2e+02 Score=30.86 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=23.9
Q ss_pred EEEEcC-CCCeeecCC-C--CeeeeeEECCCCCeEEEEE
Q 007620 159 LVLGSL-DGTAKDFGT-P--AVYTAVEPSPDQKYVLITS 193 (595)
Q Consensus 159 l~~~d~-~g~~~~lt~-~--~~~~~~~~SpDg~~l~~~~ 193 (595)
++..+. .|+++++.. + .-...+.|+|||+.|++..
T Consensus 482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eeeccccccceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 455555 567777643 2 2456899999999987764
No 283
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=58.65 E-value=1.9e+02 Score=28.30 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=75.4
Q ss_pred cccceEEccCCC-E-EEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCC
Q 007620 32 KINFVSWSPDGK-R-IAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (595)
Q Consensus 32 ~~~~~~~SPDG~-~-laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~ 108 (595)
.+..-.|||=.. + |..+. ....++-+-|+++|.- ..|....+ ++-...|||..++|+.+...
T Consensus 145 ~VYshamSp~a~sHcLiA~g---------tr~~~VrLCDi~SGs~sH~LsGHr~-----~vlaV~Wsp~~e~vLatgsa- 209 (397)
T KOG4283|consen 145 KVYSHAMSPMAMSHCLIAAG---------TRDVQVRLCDIASGSFSHTLSGHRD-----GVLAVEWSPSSEWVLATGSA- 209 (397)
T ss_pred eeehhhcChhhhcceEEEEe---------cCCCcEEEEeccCCcceeeeccccC-----ceEEEEeccCceeEEEecCC-
Confidence 477778999554 2 22222 2347888899999974 44444343 56789999999998886321
Q ss_pred CCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEe-ecceEEEEcC-CCCeeec--CCC---CeeeeeE
Q 007620 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY-TTAQLVLGSL-DGTAKDF--GTP---AVYTAVE 181 (595)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~-~g~~~~l--t~~---~~~~~~~ 181 (595)
+|. .+ .|+.. ..+.+.++|. +++.-++ +.. +.+..++
T Consensus 210 --------------------Dg~---ir-------------lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 210 --------------------DGA---IR-------------LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred --------------------Cce---EE-------------EEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 111 01 11111 2345556777 4422122 122 2345889
Q ss_pred ECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE
Q 007620 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (595)
Q Consensus 182 ~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 223 (595)
|+-||.+++..... .++-+|+...|+...
T Consensus 254 ~tSd~~~l~~~gtd-------------~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 254 WTSDARYLASCGTD-------------DRIRVWNMESGRNTL 282 (397)
T ss_pred ecccchhhhhccCc-------------cceEEeecccCcccc
Confidence 99999999877543 256677776655443
No 284
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=58.39 E-value=36 Score=23.01 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=22.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE 70 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~ 70 (595)
.+...+|||....||.... ..+|++..+.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~----------~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTE----------DGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEEC----------CCeEEEEECC
Confidence 3778999999999999864 3567777773
No 285
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=57.95 E-value=1.8e+02 Score=27.93 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=21.9
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
...+++.|....|++.+... ..|..+|.+|.....+
T Consensus 173 ~S~l~~~p~t~~lliLS~es------------~~l~~~d~~G~~~~~~ 208 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDES------------RLLLELDRQGRVVSSL 208 (248)
T ss_dssp --EEEEETTTTEEEEEETTT------------TEEEEE-TT--EEEEE
T ss_pred ccceEEcCCCCeEEEEECCC------------CeEEEECCCCCEEEEE
Confidence 35778889888888776542 3788889777755443
No 286
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=57.73 E-value=1.8e+02 Score=29.63 Aligned_cols=139 Identities=13% Similarity=0.077 Sum_probs=71.0
Q ss_pred cccceeecCCC-cEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecC-Cc
Q 007620 300 RFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN-DE 377 (595)
Q Consensus 300 ~~~~~~wspDg-~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~-~~ 377 (595)
+...+++...| ..++.+. ...|+.++++++ ..+.+.+......+... ..+...++| .+||+.+... +.
T Consensus 116 RPLGl~f~~~ggdL~VaDA-----YlGL~~V~p~g~--~a~~l~~~~~G~~~kf~--N~ldI~~~g-~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADA-----YLGLLKVGPEGG--LAELLADEAEGKPFKFL--NDLDIDPEG-VVYFTDSSSKYDR 185 (376)
T ss_pred CcceEEeccCCCeEEEEec-----ceeeEEECCCCC--cceeccccccCeeeeec--CceeEcCCC-eEEEeccccccch
Confidence 44456676665 4455543 347999999884 33444321110000000 014445533 4666653321 11
Q ss_pred ccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEE
Q 007620 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 457 (595)
Q Consensus 378 ~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~ 457 (595)
...++..-.| ....| +.++|..+..+++|.... .. .++..+|+|++.+++...+..+-..+|+-
T Consensus 186 rd~~~a~l~g--~~~GR--l~~YD~~tK~~~VLld~L-----~F-------~NGlaLS~d~sfvl~~Et~~~ri~rywi~ 249 (376)
T KOG1520|consen 186 RDFVFAALEG--DPTGR--LFRYDPSTKVTKVLLDGL-----YF-------PNGLALSPDGSFVLVAETTTARIKRYWIK 249 (376)
T ss_pred hheEEeeecC--CCccc--eEEecCcccchhhhhhcc-----cc-------cccccCCCCCCEEEEEeeccceeeeeEec
Confidence 2233322222 11222 557788776666664332 11 12357899999998888777777777776
Q ss_pred eCCCCce
Q 007620 458 SWPLKKS 464 (595)
Q Consensus 458 d~~~~~~ 464 (595)
....|+.
T Consensus 250 g~k~gt~ 256 (376)
T KOG1520|consen 250 GPKAGTS 256 (376)
T ss_pred CCccCch
Confidence 5444443
No 287
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=57.67 E-value=44 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=18.1
Q ss_pred cCCCEEEEEEecccccccCCCceEEEEEECCCCce
Q 007620 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (595)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~ 74 (595)
|||++|+ ++.+ ....|.++|+.+++.
T Consensus 1 pd~~~ly-v~~~--------~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 1 PDGTKLY-VTNS--------GSNTVSVIDTATNKV 26 (42)
T ss_pred CCCCEEE-EEeC--------CCCEEEEEECCCCeE
Confidence 7888865 4443 357888899877654
No 288
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=57.16 E-value=37 Score=32.99 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=37.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~ 99 (595)
.+-..+||-||.. +|+... + .++-++|+.+|+..++..... .+..+.|.+..-
T Consensus 74 PvL~v~Wsddgsk-Vf~g~~-------D--k~~k~wDL~S~Q~~~v~~Hd~-----pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 74 PVLDVCWSDDGSK-VFSGGC-------D--KQAKLWDLASGQVSQVAAHDA-----PVKTCHWVPGMN 126 (347)
T ss_pred CeEEEEEccCCce-EEeecc-------C--CceEEEEccCCCeeeeeeccc-----ceeEEEEecCCC
Confidence 4778899999976 466543 2 445555999999888855443 677889986654
No 289
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=57.15 E-value=15 Score=36.84 Aligned_cols=63 Identities=24% Similarity=0.361 Sum_probs=41.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhcc---------CeEEEeC
Q 007620 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR---------RFAVLAG 561 (595)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~---------GY~Vl~~ 561 (595)
.|++||=.=.+|+.-+.+ |...|+++. ||.|-.+..+ +-...+|..- =|-|++
T Consensus 132 eGL~iHFlhvk~p~~k~~-k~v~PlLl~---------------HGwPGsv~EF-ykfIPlLT~p~~hg~~~d~~FEVI~- 193 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKK-KKVKPLLLL---------------HGWPGSVREF-YKFIPLLTDPKRHGNESDYAFEVIA- 193 (469)
T ss_pred cceeEEEEEecCCccccC-CcccceEEe---------------cCCCchHHHH-HhhhhhhcCccccCCccceeEEEec-
Confidence 799999999999875543 446688883 5666544332 1223445443 366888
Q ss_pred CCCceeecCC
Q 007620 562 PSIPIIGEGD 571 (595)
Q Consensus 562 ~~~~~~~~~~ 571 (595)
|++|.+|--.
T Consensus 194 PSlPGygwSd 203 (469)
T KOG2565|consen 194 PSLPGYGWSD 203 (469)
T ss_pred cCCCCcccCc
Confidence 9999988643
No 290
>PRK00870 haloalkane dehalogenase; Provisional
Probab=57.03 E-value=21 Score=35.25 Aligned_cols=67 Identities=27% Similarity=0.431 Sum_probs=37.3
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
....+.....||.+++=. |...+ ++ .. |.||++| |.+. +...+......|+++||.|+.
T Consensus 20 ~~~~~~~~~~~~~~~~i~-y~~~G-~~--~~--~~lvliH--------------G~~~-~~~~w~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMH-YVDEG-PA--DG--PPVLLLH--------------GEPS-WSYLYRKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEE-EEecC-CC--CC--CEEEEEC--------------CCCC-chhhHHHHHHHHHhCCCEEEE
Confidence 566677766677654422 22222 22 12 6677755 3321 111111123467778999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
+|.|..|.
T Consensus 79 -~Dl~G~G~ 86 (302)
T PRK00870 79 -PDLIGFGR 86 (302)
T ss_pred -ECCCCCCC
Confidence 99998885
No 291
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=56.91 E-value=86 Score=34.94 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=33.8
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECC-CC---ceEecccCCCccccccccceEEecCCcEEEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TG---EAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-~g---~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
....++||.++.+|-.-. +++--+|. |.. .+ ..+.+-.... .+..+.||+||..|+-
T Consensus 208 ~t~~~~spn~~~~Aa~d~--------dGrI~vw~-d~~~~~~~~t~t~lHWH~~-----~V~~L~fS~~G~~LlS 268 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDS--------DGRILVWR-DFGSSDDSETCTLLHWHHD-----EVNSLSFSSDGAYLLS 268 (792)
T ss_pred ceeEEeccccceEEEecc--------CCcEEEEe-ccccccccccceEEEeccc-----ccceeEEecCCceEee
Confidence 455789999998876532 33433333 332 12 2333322222 5778999999998765
No 292
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=56.84 E-value=70 Score=28.89 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=43.0
Q ss_pred eeeEEEecCCCCCCCCceeeecCCC--CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPD--GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~--~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
-.|||+|+. +++-.+|.--+. ........|--|- .|+.+..... |.-..+.+||++++.+|+...|+...
T Consensus 88 GkIYIkn~~----~~~~~~L~i~~~~~k~sPK~i~WiDD~-~L~vIIG~a~--GTvS~GGnLy~~nl~tg~~~~ly~~~ 159 (200)
T PF15525_consen 88 GKIYIKNLN----NNNWWSLQIDQNEEKYSPKYIEWIDDN-NLAVIIGYAH--GTVSKGGNLYKYNLNTGNLTELYEWK 159 (200)
T ss_pred eeEEEEecC----CCceEEEEecCcccccCCceeEEecCC-cEEEEEcccc--ceEccCCeEEEEEccCCceeEeeecc
Confidence 479999998 777666631111 1123355677554 5555554311 00023579999999999999997643
No 293
>PRK10985 putative hydrolase; Provisional
Probab=56.66 E-value=21 Score=35.91 Aligned_cols=62 Identities=11% Similarity=-0.041 Sum_probs=32.8
Q ss_pred EEEECCCCcEEEEEEE-cCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC-CchhHHHhccCeEEEeCC
Q 007620 485 IKYQRKDGVPLTATLY-LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLAGP 562 (595)
Q Consensus 485 v~~~~~DG~~i~g~l~-~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~-~~~~q~la~~GY~Vl~~~ 562 (595)
-.++..||..+.-... .|.. .+ +.|+||++|+ .+......+ ....+.|+++||.|+. +
T Consensus 34 ~~~~~~dg~~~~l~w~~~~~~-~~----~~p~vll~HG--------------~~g~~~~~~~~~~~~~l~~~G~~v~~-~ 93 (324)
T PRK10985 34 QRLELPDGDFVDLAWSEDPAQ-AR----HKPRLVLFHG--------------LEGSFNSPYAHGLLEAAQKRGWLGVV-M 93 (324)
T ss_pred eEEECCCCCEEEEecCCCCcc-CC----CCCEEEEeCC--------------CCCCCcCHHHHHHHHHHHHCCCEEEE-E
Confidence 3456779977653332 3322 11 2388888763 111111111 1124688999999998 4
Q ss_pred CCce
Q 007620 563 SIPI 566 (595)
Q Consensus 563 ~~~~ 566 (595)
+.+.
T Consensus 94 d~rG 97 (324)
T PRK10985 94 HFRG 97 (324)
T ss_pred eCCC
Confidence 4443
No 294
>PLN02872 triacylglycerol lipase
Probab=56.46 E-value=26 Score=36.33 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=38.4
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCC-c-hhHHHhccCeE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-T-SSLIFLARRFA 557 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~-~-~~q~la~~GY~ 557 (595)
...|...+++.||..|.-.-+.+.+-..++. +-|.||++|+-. .+...|..... . -.-.||++||.
T Consensus 42 y~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~-~~~~Vll~HGl~-----------~ss~~w~~~~~~~sla~~La~~Gyd 109 (395)
T PLN02872 42 YSCTEHTIQTKDGYLLALQRVSSRNPRLGSQ-RGPPVLLQHGLF-----------MAGDAWFLNSPEQSLGFILADHGFD 109 (395)
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCCCCCCC-CCCeEEEeCccc-----------ccccceeecCcccchHHHHHhCCCC
Confidence 4788899999999888776664332111111 126677766421 11122221111 1 12368899999
Q ss_pred EEe
Q 007620 558 VLA 560 (595)
Q Consensus 558 Vl~ 560 (595)
|+.
T Consensus 110 V~l 112 (395)
T PLN02872 110 VWV 112 (395)
T ss_pred ccc
Confidence 998
No 295
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=56.30 E-value=16 Score=36.98 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=39.1
Q ss_pred EECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCC--cccC-------------CCCcccCCCCchhHHH
Q 007620 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAG--QVRG-------------SPNEFSGMTPTSSLIF 551 (595)
Q Consensus 487 ~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~--~~~g-------------gp~~~~~~~~~~~q~l 551 (595)
|++.||..|..+.+.|.+ + .-+||.+|+- +.|.. .+.. .+..|....-...+.|
T Consensus 2 ~~~~~g~~l~~~~~~~~~--~-----kg~v~i~HG~----~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l 70 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN--A-----IGIIVLIHGL----KSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENF 70 (332)
T ss_pred ccCCCCCeEEEeeeeccC--C-----eEEEEEECCC----chhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHH
Confidence 578899999999988852 2 2566666541 00000 0000 0001100001246899
Q ss_pred hccCeEEEeCCCCceee
Q 007620 552 LARRFAVLAGPSIPIIG 568 (595)
Q Consensus 552 a~~GY~Vl~~~~~~~~~ 568 (595)
+++||.|+. .|.+.-|
T Consensus 71 ~~~G~~V~~-~D~rGHG 86 (332)
T TIGR01607 71 NKNGYSVYG-LDLQGHG 86 (332)
T ss_pred HHCCCcEEE-ecccccC
Confidence 999999999 7776655
No 296
>KOG3101 consensus Esterase D [General function prediction only]
Probab=55.40 E-value=18 Score=33.26 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=34.3
Q ss_pred cEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhcc-CeEEEeCCCCc
Q 007620 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVLAGPSIP 565 (595)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~-GY~Vl~~~~~~ 565 (595)
-++.=-+|+|+.+..+| +.|+|.|.-+ ..-.+..|-.. ...|..|++ |.+|+. ||..
T Consensus 26 c~Mtf~vylPp~a~~~k--~~P~lf~LSG-----------LTCT~~Nfi~K--sg~qq~As~hgl~vV~-PDTS 83 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGK--RCPVLFYLSG-----------LTCTHENFIEK--SGFQQQASKHGLAVVA-PDTS 83 (283)
T ss_pred cceEEEEecCCCcccCC--cCceEEEecC-----------CcccchhhHhh--hhHHHhHhhcCeEEEC-CCCC
Confidence 35666788999988777 5699998521 11122223221 123555555 999998 6543
No 297
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=55.01 E-value=2.2e+02 Score=27.97 Aligned_cols=69 Identities=16% Similarity=0.333 Sum_probs=39.4
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc--eEecccCCCccccccccceEEecCCc
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNST 99 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~lt~~~~~~~~~~~~~~~Wspdg~ 99 (595)
..|+.-|+ ..++...|||.-..++...+- ++.-.+|-+.-. |. ++..-.. ++.+-...|+.||.
T Consensus 20 ~ev~~pP~-DsIS~l~FSP~~~~~~~A~SW-------D~tVR~wevq~~-g~~~~ka~~~~-----~~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 20 YEVPNPPE-DSISALAFSPQADNLLAAGSW-------DGTVRIWEVQNS-GQLVPKAQQSH-----DGPVLDVCWSDDGS 85 (347)
T ss_pred eecCCCcc-cchheeEeccccCceEEeccc-------CCceEEEEEecC-Ccccchhhhcc-----CCCeEEEEEccCCc
Confidence 34554333 379999999944433323322 566778876654 32 2222221 22456889999997
Q ss_pred EEEEE
Q 007620 100 LLIFT 104 (595)
Q Consensus 100 ~l~~~ 104 (595)
.++..
T Consensus 86 kVf~g 90 (347)
T KOG0647|consen 86 KVFSG 90 (347)
T ss_pred eEEee
Confidence 65553
No 298
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=54.81 E-value=2.7e+02 Score=28.97 Aligned_cols=59 Identities=7% Similarity=0.088 Sum_probs=40.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.+..-+|+|.+|+-.. -..+||++.+++|+.--+.. .. ...+..+.++.||+.|+-.
T Consensus 83 ~v~al~s~n~G~~l~ag~----------i~g~lYlWelssG~LL~v~~-aH---YQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGT----------ISGNLYLWELSSGILLNVLS-AH---YQSITCLKFSDDGSHIITG 141 (476)
T ss_pred ceeeeecCCCceEEEeec----------ccCcEEEEEeccccHHHHHH-hh---ccceeEEEEeCCCcEEEec
Confidence 377888899997665432 24678888999998543321 11 2256789999999987654
No 299
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=54.74 E-value=1.8e+02 Score=32.03 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=45.7
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
-+-+.|++ +|+. .+...-.......+...+||+++|....+ ...|-++.+.+|+..+.-..-+
T Consensus 41 ~Vi~idv~----t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r----------s~llrv~~L~tgk~irswKa~H-- 104 (775)
T KOG0319|consen 41 RVIIIDVA----TGSIALPSGSNEDEDEITALALTPDEEVLVTASR----------SQLLRVWSLPTGKLIRSWKAIH-- 104 (775)
T ss_pred eEEEEEcc----CCceecccCCccchhhhheeeecCCccEEEEeec----------cceEEEEEcccchHhHhHhhcc--
Confidence 35556777 5555 22222122224668899999988776653 3566677888886444322211
Q ss_pred ccccccceEEecCCcEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~ 103 (595)
.+++-.++++|.|..|+-
T Consensus 105 -e~Pvi~ma~~~~g~LlAt 122 (775)
T KOG0319|consen 105 -EAPVITMAFDPTGTLLAT 122 (775)
T ss_pred -CCCeEEEEEcCCCceEEe
Confidence 113446778888854433
No 300
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=52.75 E-value=1.9e+02 Score=30.87 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=24.9
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 223 (595)
.+..+..||||+.++..+ ++|-+||++++++-.
T Consensus 146 ~~~sl~is~D~~~l~~as---------------~~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS---------------RQIKVLDIETKEVVI 178 (541)
T ss_pred ccceEEEcCCCCEEEecc---------------ceEEEEEccCceEEE
Confidence 456889999999887664 368899998776533
No 301
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.32 E-value=61 Score=37.24 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=45.3
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcccc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (595)
..|+||. +......+.........+...|.||+..-+.++..+.. ...-++|=+...+.-.+.++.+..
T Consensus 186 ~~iWDlr---~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~----~PviqlWDlR~assP~k~~~~H~~---- 254 (1049)
T KOG0307|consen 186 AVIWDLR---KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS----APVIQLWDLRFASSPLKILEGHQR---- 254 (1049)
T ss_pred ceecccc---CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC----CceeEeecccccCCchhhhccccc----
Confidence 4577886 13233444433333347789999997754454443210 223345533222222333333333
Q ss_pred ccccceEEecCCcEEEEE
Q 007620 87 AVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 87 ~~~~~~~Wspdg~~l~~~ 104 (595)
++-++.|.+.+..++++
T Consensus 255 -GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 255 -GILSLSWCPQDPRLLLS 271 (1049)
T ss_pred -ceeeeccCCCCchhhhc
Confidence 56689999887655554
No 302
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=51.19 E-value=2.2e+02 Score=26.92 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=35.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.....|-|..++|-. .+..++.++|+++|+..+-..... +.+...+|..+...|+-.
T Consensus 61 EVlD~~~s~Dnskf~s~----------GgDk~v~vwDV~TGkv~Rr~rgH~----aqVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFASC----------GGDKAVQVWDVNTGKVDRRFRGHL----AQVNTVRFNEESSVVASG 119 (307)
T ss_pred eeeeccccccccccccC----------CCCceEEEEEcccCeeeeeccccc----ceeeEEEecCcceEEEec
Confidence 45566667777665543 234677888999998533322211 246677787777655543
No 303
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=51.04 E-value=3.6e+02 Score=29.30 Aligned_cols=21 Identities=5% Similarity=0.025 Sum_probs=16.7
Q ss_pred CCeeeeeEECCCCCeEEEEEc
Q 007620 174 PAVYTAVEPSPDQKYVLITSM 194 (595)
Q Consensus 174 ~~~~~~~~~SpDg~~l~~~~~ 194 (595)
.+.+.-..|.+||.+|++...
T Consensus 155 ~G~IhCACWT~DG~RLVVAvG 175 (671)
T PF15390_consen 155 SGLIHCACWTKDGQRLVVAVG 175 (671)
T ss_pred CceEEEEEecCcCCEEEEEeC
Confidence 345677899999999988853
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=50.53 E-value=24 Score=33.94 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=27.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEec
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (595)
+-...+||||+..|||... ...|.++|+-+.+...|
T Consensus 45 QWRkl~WSpD~tlLa~a~S----------~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAES----------TGTIRVFDLMGSELFVI 80 (282)
T ss_pred hheEEEECCCCcEEEEEcC----------CCeEEEEecccceeEEc
Confidence 4556789999999999864 35677779877666655
No 305
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=50.46 E-value=38 Score=35.68 Aligned_cols=72 Identities=21% Similarity=0.395 Sum_probs=38.2
Q ss_pred eEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC------------c
Q 007620 7 IGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG------------E 73 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g------------~ 73 (595)
|.++|.+ +++. +++. .+ .+....||+||++||+++. ..+++++-+-. .
T Consensus 128 i~~yDw~----~~~~i~~i~-v~---~vk~V~Ws~~g~~val~t~-----------~~i~il~~~~~~~~~~~~~g~e~~ 188 (443)
T PF04053_consen 128 ICFYDWE----TGKLIRRID-VS---AVKYVIWSDDGELVALVTK-----------DSIYILKYNLEAVAAIPEEGVEDA 188 (443)
T ss_dssp EEEE-TT----T--EEEEES-S----E-EEEEE-TTSSEEEEE-S------------SEEEEEE-HHHHHHBTTTB-GGG
T ss_pred EEEEEhh----HcceeeEEe-cC---CCcEEEEECCCCEEEEEeC-----------CeEEEEEecchhcccccccCchhc
Confidence 8888888 4544 4443 12 2678999999999999863 34555543322 2
Q ss_pred eEecccCCCccccccccceEEecCCcEEEEE
Q 007620 74 AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 74 ~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
...++.... .+.+..|..| .++|+
T Consensus 189 f~~~~E~~~-----~IkSg~W~~d--~fiYt 212 (443)
T PF04053_consen 189 FELIHEISE-----RIKSGCWVED--CFIYT 212 (443)
T ss_dssp EEEEEEE-S-------SEEEEETT--EEEEE
T ss_pred eEEEEEecc-----eeEEEEEEcC--EEEEE
Confidence 223322122 4668899977 66665
No 306
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=50.08 E-value=39 Score=32.02 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=28.7
Q ss_pred ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCch---hHHHhccCeEEEeCCCC
Q 007620 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS---SLIFLARRFAVLAGPSI 564 (595)
Q Consensus 488 ~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~---~q~la~~GY~Vl~~~~~ 564 (595)
.-.||.+|.-|=.+|.+-.+ ++. |.||.. | +|.....+. +.||+++||.|+.--++
T Consensus 8 ~~~~~~~I~vwet~P~~~~~-~~~--~tiliA-~-----------------Gf~rrmdh~agLA~YL~~NGFhViRyDsl 66 (294)
T PF02273_consen 8 RLEDGRQIRVWETRPKNNEP-KRN--NTILIA-P-----------------GFARRMDHFAGLAEYLSANGFHVIRYDSL 66 (294)
T ss_dssp EETTTEEEEEEEE---TTS----S---EEEEE-------------------TT-GGGGGGHHHHHHHHTTT--EEEE---
T ss_pred EcCCCCEEEEeccCCCCCCc-ccC--CeEEEe-c-----------------chhHHHHHHHHHHHHHhhCCeEEEecccc
Confidence 34699999999999988444 444 777753 1 122111122 46999999999973456
Q ss_pred ceeecCCCCCCc
Q 007620 565 PIIGEGDKLPND 576 (595)
Q Consensus 565 ~~~~~~~~~~~~ 576 (595)
.+.|--+...++
T Consensus 67 ~HvGlSsG~I~e 78 (294)
T PF02273_consen 67 NHVGLSSGDINE 78 (294)
T ss_dssp B-----------
T ss_pred ccccCCCCChhh
Confidence 667764444443
No 307
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=49.53 E-value=2.8e+02 Score=27.62 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=40.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~ 107 (595)
....|+|- || +|.|+- .+...|..+|.++|+...+...++ ....+.|. |+++++....
T Consensus 204 mPhSPRWh-dg-rLwvld---------sgtGev~~vD~~~G~~e~Va~vpG-----~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 204 MPHSPRWY-QG-KLWLLN---------SGRGELGYVDPQAGKFQPVAFLPG-----FTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred CCcCCcEe-CC-eEEEEE---------CCCCEEEEEcCCCCcEEEEEECCC-----CCccccee--CCEEEEEecc
Confidence 35678887 45 465543 356788999988888888876665 45688888 8877775443
No 308
>PLN02511 hydrolase
Probab=49.39 E-value=42 Score=34.72 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=36.6
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+...++..||-.+.-..+.+........ -|+||.+|+- .|+... .+.......+.++||.|+.
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~~~~--~p~vvllHG~-----------~g~s~~--~y~~~~~~~~~~~g~~vv~ 134 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRALPAD--APVLILLPGL-----------TGGSDD--SYVRHMLLRARSKGWRVVV 134 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccCCCC--CCEEEEECCC-----------CCCCCC--HHHHHHHHHHHHCCCEEEE
Confidence 344446667899888743333221111112 2888887641 122111 0001123456789999998
Q ss_pred CCCCceee
Q 007620 561 GPSIPIIG 568 (595)
Q Consensus 561 ~~~~~~~~ 568 (595)
++.+..|
T Consensus 135 -~d~rG~G 141 (388)
T PLN02511 135 -FNSRGCA 141 (388)
T ss_pred -EecCCCC
Confidence 6665554
No 309
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=48.05 E-value=2.5e+02 Score=29.63 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=23.4
Q ss_pred ecceEEEEcC-CCC-eeecCCCCeeeeeEECCCCCeEEEEEc
Q 007620 155 TTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSM 194 (595)
Q Consensus 155 ~~~~l~~~d~-~g~-~~~lt~~~~~~~~~~SpDg~~l~~~~~ 194 (595)
....|..+|. +++ ++++.-.. ...+.||+||++|++.+.
T Consensus 124 ~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 124 SSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp ETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S
T ss_pred CCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC
Confidence 3445888998 554 55665433 457899999999999963
No 310
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=47.91 E-value=1.1e+02 Score=34.84 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=25.5
Q ss_pred ceEEEEEECC-----CCc--EEEEEEEcCCCCCCCCCCCCcEEEE
Q 007620 481 QKEMIKYQRK-----DGV--PLTATLYLPPGYDQSKDGPLPCLFW 518 (595)
Q Consensus 481 ~~e~v~~~~~-----DG~--~i~g~l~~P~~~~~~k~y~lP~vv~ 518 (595)
-.|.|.+.+. ||+ .|+.-+++|..-..| +++|+|+-
T Consensus 169 ire~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~~~g--~k~p~i~~ 211 (767)
T PRK05371 169 IREVVYVETPVDTDQDGKLDLVKVTIVRPKETASG--LKVPVIMT 211 (767)
T ss_pred eEEEEEEeCCCCCCCCCCcceEEEEEECCCccCCC--CccceEEe
Confidence 4555666443 775 699999999875543 57899986
No 311
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=47.64 E-value=3.4e+02 Score=28.03 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=38.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCC---cccceEEccCCCEEEEEEeccccccc-CCCceEEEEEECCCCceEecc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA---KINFVSWSPDGKRIAFSVRVDEEDNV-SSCKLRVWIADAETGEAKPLF 78 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~---~~~~~~~SPDG~~laf~~~~~~~~~~-~~~~~~L~v~d~~~g~~~~lt 78 (595)
-|||.++.+ ..+-+++.. +..+ ...+.+.-|.|....|-.......++ --...++|++++++.+..+|-
T Consensus 98 ndLy~Yn~k----~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTK----KNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeeEEecc----ccceeEecc-CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 478888887 566666652 3332 33455666777433332221111010 012357999999999888884
No 312
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=47.17 E-value=1.3e+02 Score=30.57 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=37.0
Q ss_pred ceEEEEcC-CC-CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 157 ~~l~~~d~-~g-~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
..+.++|+ +| ....|..++.+.+.+|+-||..|+-+.-+ ..|-+||...+++
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-------------KkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-------------KKVRVIDPRRGTV 207 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-------------ceeEEEcCCCCcE
Confidence 35666777 66 45567777777899999999988766432 3688888876654
No 313
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=47.01 E-value=1.4e+02 Score=32.89 Aligned_cols=58 Identities=7% Similarity=0.074 Sum_probs=35.3
Q ss_pred CceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEE
Q 007620 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (595)
Q Consensus 246 ~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~ 316 (595)
.+++|++|+ |+.+-+-|.- -.+.+|++ .+- +...++.+..+.....+|||.++.++..
T Consensus 83 ~vAfS~~Gr----yvatGEcG~~-------pa~kVw~l-a~h-~vVAEfvdHKY~vtcvaFsp~~kyvvSV 140 (1080)
T KOG1408|consen 83 CVAFSQNGR----YVATGECGRT-------PASKVWSL-AFH-GVVAEFVDHKYNVTCVAFSPGNKYVVSV 140 (1080)
T ss_pred EEEEcCCCc----EEEecccCCC-------ccceeeee-ccc-cchhhhhhccccceeeeecCCCcEEEee
Confidence 578899998 4422221210 12334454 122 3444566677788999999999987765
No 314
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=46.83 E-value=86 Score=29.15 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=44.0
Q ss_pred CCCCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchh-HHH
Q 007620 473 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIF 551 (595)
Q Consensus 473 ~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~-q~l 551 (595)
+-++...+.-|.++.+.+|-.++++|+++-.+ ..|++++.|+- ++.+ ++. .... -+|
T Consensus 45 ptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~N-------AGNm-----Ghr---~~i~~~fy 102 (300)
T KOG4391|consen 45 PTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHAN-------AGNM-----GHR---LPIARVFY 102 (300)
T ss_pred CCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccC-------CCcc-----cch---hhHHHHHH
Confidence 44444556889999999999999999998221 33999998852 1111 111 1111 378
Q ss_pred hccCeEEEe
Q 007620 552 LARRFAVLA 560 (595)
Q Consensus 552 a~~GY~Vl~ 560 (595)
.+.+.-||.
T Consensus 103 ~~l~mnv~i 111 (300)
T KOG4391|consen 103 VNLKMNVLI 111 (300)
T ss_pred HHcCceEEE
Confidence 888999987
No 315
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=46.49 E-value=56 Score=32.91 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=34.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCch--hHHHhccCeEEEe
Q 007620 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS--SLIFLARRFAVLA 560 (595)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~--~q~la~~GY~Vl~ 560 (595)
....|..+||+|..-.+.+ ++|+|||+|+| +-+.|++. ...++. .++-++.+-+|+.
T Consensus 70 ~~~~l~vRly~P~~~~~~~--~~p~lvyfHGG--------Gf~~~S~~---~~~y~~~~~~~a~~~~~vvvS 128 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSSSET--KLPVLVYFHGG--------GFCLGSAN---SPAYDSFCTRLAAELNCVVVS 128 (336)
T ss_pred CCCCeEEEEEcCCCCCccc--CceEEEEEeCC--------ccEeCCCC---CchhHHHHHHHHHHcCeEEEe
Confidence 4456899999998755422 56999998864 12334322 111222 2444556999987
No 316
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=45.54 E-value=1.2e+02 Score=31.16 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=37.6
Q ss_pred ccceEEccCCCEEEEEEecccc---------c-ccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEE---------D-NVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~---------~-~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l 101 (595)
...++|.|||. |+|....... + ........|+.+++++++...+...-. ....+.|+|+|+++
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-----np~Gl~~d~~G~l~ 198 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-----NPYGHSVDSWGDVF 198 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC-----CCccceECCCCCEE
Confidence 55799999995 6664431100 0 000112469999998887766642211 23478999999863
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=45.33 E-value=56 Score=20.23 Aligned_cols=18 Identities=44% Similarity=0.815 Sum_probs=15.3
Q ss_pred cccceEEccCCCEEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSV 49 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~ 49 (595)
.+....|+|+++.|+-.+
T Consensus 13 ~i~~i~~~~~~~~~~s~~ 30 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGS 30 (39)
T ss_dssp SEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEecccccceeeC
Confidence 588999999999887765
No 318
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=43.67 E-value=41 Score=36.29 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=29.1
Q ss_pred EEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 64 VWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 64 L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
++..+...++.+++...+.+ .++..+.|+||++.|++.
T Consensus 482 ~~~~~~~~g~~~rf~~~P~g---aE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNG---AEITGPCFSPDGRTLFVN 519 (524)
T ss_pred eeeccccccceeeeccCCCC---cccccceECCCCCEEEEE
Confidence 66667778888888655543 367799999999998775
No 319
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=43.19 E-value=3.2e+02 Score=26.45 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=33.5
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC-c-eEecccCCCccccccccceEEecCCcEEEEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-E-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
......|||+++++-+.. ..+++++.++.. + ...++..+.- +.++ .-.||.....++..
T Consensus 161 ~ns~~~snd~~~~~~Vgd----------s~~Vf~y~id~~sey~~~~~~a~t~--D~gF-~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGD----------SRRVFRYAIDDESEYIENIYEAPTS--DHGF-YNSFSENDLQFAVV 221 (344)
T ss_pred eeeeEEcCCCceEEEecC----------CCcceEEEeCCccceeeeeEecccC--CCce-eeeeccCcceEEEE
Confidence 667899999999888743 467777766542 2 2332211110 0011 34677666665554
No 320
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.11 E-value=3.1e+02 Score=26.30 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=31.7
Q ss_pred cceEEEEcCC-C-Cee---ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC
Q 007620 156 TAQLVLGSLD-G-TAK---DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 156 ~~~l~~~d~~-g-~~~---~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
...|++++++ + .++ .+...+...+++||+.-..++++...+ ..|.+||+.
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD------------GSLrl~d~~ 91 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD------------GSLRLFDLT 91 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecC------------ceEEEeccC
Confidence 5789999884 3 222 222233345899999988777776543 256777743
No 321
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.91 E-value=95 Score=33.50 Aligned_cols=50 Identities=30% Similarity=0.561 Sum_probs=33.9
Q ss_pred eEEEecCCCCCCCCceeeecCC-CCCccc-ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYP-DGAKIN-FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE 73 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~-~~~~~~-~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~ 73 (595)
|-|+++. -++|-++| .+..+. +.+|-|||+.||+--. ...|-+.|+..|.
T Consensus 44 lli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k----------dG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 44 LLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK----------DGTIRLHDVEKGG 95 (665)
T ss_pred EEEEEec-------cceeEeccCCCCccceeeeecCCCCEEEEEec----------CCeEEEEEccCCC
Confidence 6666663 23343355 444455 8999999999999764 2567788988765
No 322
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=40.64 E-value=27 Score=34.21 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=10.7
Q ss_pred HHHhccCeEEEe
Q 007620 549 LIFLARRFAVLA 560 (595)
Q Consensus 549 q~la~~GY~Vl~ 560 (595)
--+|+.||+|..
T Consensus 139 ~~LAShG~VVaa 150 (399)
T KOG3847|consen 139 TSLASHGFVVAA 150 (399)
T ss_pred hhHhhCceEEEE
Confidence 478999999998
No 323
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=39.10 E-value=1e+02 Score=20.44 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=23.2
Q ss_pred ccceEEccCC---CEEEEEEecccccccCCCceEEEEEECCCC-ceEec
Q 007620 33 INFVSWSPDG---KRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPL 77 (595)
Q Consensus 33 ~~~~~~SPDG---~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-~~~~l 77 (595)
+...+|||+. +.|||+ +....+.++|+.++ ..+|+
T Consensus 3 vR~~kFsP~~~~~DLL~~~----------E~~g~vhi~D~R~~f~~~QV 41 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWA----------EHQGRVHIVDTRSNFMRRQV 41 (43)
T ss_pred eEEEEeCCCCCcccEEEEE----------ccCCeEEEEEcccCccceEe
Confidence 5677899854 467665 34578999999843 33443
No 324
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=38.79 E-value=32 Score=34.69 Aligned_cols=60 Identities=15% Similarity=0.265 Sum_probs=43.8
Q ss_pred CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..+...+||||+..+.+-+- .+-++++|+..|....+...... .+....|.|-++.|+-.
T Consensus 124 ~diydL~Ws~d~~~l~s~s~----------dns~~l~Dv~~G~l~~~~~dh~~----yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSV----------DNSVRLWDVHAGQLLAILDDHEH----YVQGVAWDPLNQYVASK 183 (434)
T ss_pred cchhhhhccCCCceeeeeec----------cceEEEEEeccceeEeecccccc----ccceeecchhhhhhhhh
Confidence 35778999999998887653 35677778888887666443321 35578999999987765
No 325
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=38.24 E-value=91 Score=30.62 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=37.1
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCc-hhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT-SSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~-~~q~la~~GY~Vl 559 (595)
....--+++.+|.++.-...+|.+-.+ |.-+|+++|+- |-+ ..+.+. .+-.||+.||+|+
T Consensus 26 ~~~~~~~~n~rG~~lft~~W~p~~~~~----pr~lv~~~HG~-------------g~~--~s~~~~~~a~~l~~~g~~v~ 86 (313)
T KOG1455|consen 26 TYSESFFTNPRGAKLFTQSWLPLSGTE----PRGLVFLCHGY-------------GEH--SSWRYQSTAKRLAKSGFAVY 86 (313)
T ss_pred ceeeeeEEcCCCCEeEEEecccCCCCC----CceEEEEEcCC-------------ccc--chhhHHHHHHHHHhCCCeEE
Confidence 344455678999999999999975322 33455554420 101 111112 3458999999999
Q ss_pred e
Q 007620 560 A 560 (595)
Q Consensus 560 ~ 560 (595)
.
T Consensus 87 a 87 (313)
T KOG1455|consen 87 A 87 (313)
T ss_pred E
Confidence 8
No 326
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=38.01 E-value=85 Score=19.80 Aligned_cols=32 Identities=9% Similarity=-0.119 Sum_probs=24.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG 72 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g 72 (595)
....+.|+|++++|+|+-. ....|++.++++.
T Consensus 10 ~~~~la~d~~~~~lYw~D~---------~~~~I~~~~~~g~ 41 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDW---------GLDVIEVANLDGT 41 (43)
T ss_pred CcCEEEEeecCCEEEEEeC---------CCCEEEEEeCCCC
Confidence 3556999999999988753 3477888888764
No 327
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=37.17 E-value=4.4e+02 Score=26.38 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=27.6
Q ss_pred eEEEEEECCCCceEecc--c-C-------CCccccccccceEEecCCcEEEEE
Q 007620 62 LRVWIADAETGEAKPLF--E-S-------PDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt--~-~-------~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..|+.++.++.-.+.+. . . .....|.++.+++++|||+.|+..
T Consensus 112 p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 112 PRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred CEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 88999998743333331 1 0 112235667799999999976665
No 328
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.85 E-value=3.8e+02 Score=25.56 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=38.1
Q ss_pred ccccCccccceeecCC-CcE---EEEEEeecccceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEE
Q 007620 294 LHKLDLRFRSVSWCDD-SLA---LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNV 367 (595)
Q Consensus 294 l~~~~~~~~~~~wspD-g~~---l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l 367 (595)
|......+..++|.|. |.. ++.- ..++..-||..+.+..+-+.++|.+. -+.. ++||..|..|
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~--SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~---------vSWS~sGn~L 271 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASC--SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWR---------VSWSLSGNIL 271 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEe--cCCCcEEEEEecCccCcccccccccCCcceEE---------EEEeccccEE
Confidence 3333445678899997 432 3332 34566678888755432233444221 1222 7899999988
Q ss_pred EEEe
Q 007620 368 IAKI 371 (595)
Q Consensus 368 ~~~~ 371 (595)
.+.-
T Consensus 272 aVs~ 275 (299)
T KOG1332|consen 272 AVSG 275 (299)
T ss_pred EEec
Confidence 7664
No 329
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=36.75 E-value=3.9e+02 Score=29.64 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=26.3
Q ss_pred ceEEEEcC-CCCe-eec-CCCCeeeeeEECCCCCeEEEEEc
Q 007620 157 AQLVLGSL-DGTA-KDF-GTPAVYTAVEPSPDQKYVLITSM 194 (595)
Q Consensus 157 ~~l~~~d~-~g~~-~~l-t~~~~~~~~~~SpDg~~l~~~~~ 194 (595)
..|.++|. +|+- -+. ...+.++.+.|++|=|+|+-++.
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG 703 (1080)
T ss_pred CceEEEEeccchhhhhhcCcchheeeeeecccchhheeecC
Confidence 35677777 7753 233 33456789999999999887754
No 330
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.72 E-value=6.3e+02 Score=27.73 Aligned_cols=56 Identities=21% Similarity=0.177 Sum_probs=30.0
Q ss_pred eEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe
Q 007620 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 277 ~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.|.+|| |.++.+.-.|......+..+..++||..++..+. ++..+|| |+. ..++++
T Consensus 194 ~lr~wD--prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS--DgtIrlW--dLg----qQrCl~ 249 (735)
T KOG0308|consen 194 DLRLWD--PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS--DGTIRLW--DLG----QQRCLA 249 (735)
T ss_pred ceEEec--cccccceeeeeccccceEEEEEcCCCCeEeecCC--CceEEee--ecc----ccceee
Confidence 455666 3444333344433334556777889988766532 2433454 552 457663
No 331
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=35.27 E-value=66 Score=31.30 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=17.4
Q ss_pred hHHHhccCeEEEeCCCCceeec
Q 007620 548 SLIFLARRFAVLAGPSIPIIGE 569 (595)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~~~ 569 (595)
.+.|+++||.|+. ++.|..|.
T Consensus 38 ~~~L~~~g~~vi~-~dl~g~G~ 58 (273)
T PLN02211 38 RCLMENSGYKVTC-IDLKSAGI 58 (273)
T ss_pred HHHHHhCCCEEEE-ecccCCCC
Confidence 3578888999999 99998774
No 332
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=35.24 E-value=64 Score=31.39 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=45.9
Q ss_pred eEEEEEECCCCc--EEEEEEE--cCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeE
Q 007620 482 KEMIKYQRKDGV--PLTATLY--LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (595)
Q Consensus 482 ~e~v~~~~~DG~--~i~g~l~--~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~ 557 (595)
...+.|++.+|. ++++.+. .|.+ -++.+||=+| |.|-+...+-|. .+.|...|..
T Consensus 6 ~~~~k~~~~~~~~~~~~a~y~D~~~~g------s~~gTVv~~h--------------GsPGSH~DFkYi-~~~l~~~~iR 64 (297)
T PF06342_consen 6 RKLVKFQAENGKIVTVQAVYEDSLPSG------SPLGTVVAFH--------------GSPGSHNDFKYI-RPPLDEAGIR 64 (297)
T ss_pred EEEEEcccccCceEEEEEEEEecCCCC------CCceeEEEec--------------CCCCCccchhhh-hhHHHHcCeE
Confidence 345677777775 6777776 3432 2446788644 555432222221 3789999999
Q ss_pred EEeCCCCceeecCCCCCCchhhHhhhcccce
Q 007620 558 VLAGPSIPIIGEGDKLPNDRYLILSYLNRVR 588 (595)
Q Consensus 558 Vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (595)
|+. |++.|++ +-+.+..|++.|.-|
T Consensus 65 ~I~---iN~PGf~---~t~~~~~~~~~n~er 89 (297)
T PF06342_consen 65 FIG---INYPGFG---FTPGYPDQQYTNEER 89 (297)
T ss_pred EEE---eCCCCCC---CCCCCcccccChHHH
Confidence 998 5556654 333344455555444
No 333
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=35.04 E-value=40 Score=31.06 Aligned_cols=33 Identities=18% Similarity=0.010 Sum_probs=19.6
Q ss_pred hHHHhc-cCeEEEeCCCCceeecCCCCCCchhhHhhhc
Q 007620 548 SLIFLA-RRFAVLAGPSIPIIGEGDKLPNDRYLILSYL 584 (595)
Q Consensus 548 ~q~la~-~GY~Vl~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (595)
...+|+ .||+|+. +.|+-.-....+..+++...
T Consensus 21 ~~~la~~~g~~v~~----~~Yrl~p~~~~p~~~~D~~~ 54 (211)
T PF07859_consen 21 AARLAAERGFVVVS----IDYRLAPEAPFPAALEDVKA 54 (211)
T ss_dssp HHHHHHHHTSEEEE----EE---TTTSSTTHHHHHHHH
T ss_pred HHHHHhhccEEEEE----eecccccccccccccccccc
Confidence 345565 8999998 77887555555666665543
No 334
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.93 E-value=4.6e+02 Score=25.97 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=13.0
Q ss_pred eeeEECCCCCeEEEEEc
Q 007620 178 TAVEPSPDQKYVLITSM 194 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~ 194 (595)
..+.|+|.|.+.++...
T Consensus 172 t~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGR 188 (362)
T ss_pred eeeEEcCCCCEEEEEec
Confidence 34899999998777653
No 335
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=34.76 E-value=52 Score=32.60 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=40.7
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
....-.|.+.||..+..+...+..-. .-+||.+|+. -. +...+....+.|+++||.|+.
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~~~------~g~Vvl~HG~--------------~E-h~~ry~~la~~l~~~G~~V~~ 66 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPEPP------KGVVVLVHGL--------------GE-HSGRYEELADDLAARGFDVYA 66 (298)
T ss_pred ccccceeecCCCceEEEEeecCCCCC------CcEEEEecCc--------------hH-HHHHHHHHHHHHHhCCCEEEE
Confidence 44556778899999999999887421 1566665531 11 111112236899999999998
Q ss_pred CCCCce
Q 007620 561 GPSIPI 566 (595)
Q Consensus 561 ~~~~~~ 566 (595)
-|.+.
T Consensus 67 -~D~RG 71 (298)
T COG2267 67 -LDLRG 71 (298)
T ss_pred -ecCCC
Confidence 55544
No 336
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=34.30 E-value=26 Score=29.80 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=17.0
Q ss_pred hhHHHhccCeEEEeCCCCceeec
Q 007620 547 SSLIFLARRFAVLAGPSIPIIGE 569 (595)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~~~~~~ 569 (595)
..+.|+++||.|+. ++.|..+.
T Consensus 18 ~~~~l~~~G~~v~~-~~~~~~~~ 39 (145)
T PF12695_consen 18 LAEALAEQGYAVVA-FDYPGHGD 39 (145)
T ss_dssp HHHHHHHTTEEEEE-ESCTTSTT
T ss_pred HHHHHHHCCCEEEE-EecCCCCc
Confidence 35799999999999 66665554
No 337
>KOG4328 consensus WD40 protein [Function unknown]
Probab=33.81 E-value=5.7e+02 Score=26.69 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=51.4
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.-++.++|+....++-. .-+...+....++...|||...--.|+++- ..-|-..|++++....+......
T Consensus 209 ~G~VG~Wn~~~~~~d~d-~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy---------DGtiR~~D~~~~i~e~v~s~~~d 278 (498)
T KOG4328|consen 209 GGQVGLWNFGTQEKDKD-GVYLFTPHSGPVSGLKFSPANTSQIYSSSY---------DGTIRLQDFEGNISEEVLSLDTD 278 (498)
T ss_pred CCcEEEEecCCCCCccC-ceEEeccCCccccceEecCCChhheeeecc---------CceeeeeeecchhhHHHhhcCcc
Confidence 44677888831001222 222224666679999999976655555542 35577788887765555433211
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+..++++.++.+...++|.
T Consensus 279 --~~~fs~~d~~~e~~~vl~~ 297 (498)
T KOG4328|consen 279 --NIWFSSLDFSAESRSVLFG 297 (498)
T ss_pred --ceeeeeccccCCCccEEEe
Confidence 1245677777777776664
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=33.74 E-value=52 Score=35.85 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=48.9
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce--EecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~ 83 (595)
-|||.+.. +|..+.++.--..........|++...+|+.... +.--++.++. .+.+ ..+|....
T Consensus 56 ~lyl~~R~----~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~--------g~V~v~ql~~-~~p~~~~~~t~~d~- 121 (726)
T KOG3621|consen 56 SVYLYNRH----TGEMRKLKNEGATGITCVRSVSSVEYLVAAGTAS--------GRVSVFQLNK-ELPRDLDYVTPCDK- 121 (726)
T ss_pred eEEEEecC----chhhhcccccCccceEEEEEecchhHhhhhhcCC--------ceEEeehhhc-cCCCcceeeccccc-
Confidence 36777765 6666666521122245567889999888886642 3344444443 2222 33332211
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.....+..+.||+|++.+++.
T Consensus 122 ~~~~rVTal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 122 SHKCRVTALEWSKNGMKLYSG 142 (726)
T ss_pred cCCceEEEEEecccccEEeec
Confidence 001146789999999998874
No 339
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=33.29 E-value=48 Score=31.57 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=12.3
Q ss_pred hhHHHhccCeEEEe
Q 007620 547 SSLIFLARRFAVLA 560 (595)
Q Consensus 547 ~~q~la~~GY~Vl~ 560 (595)
..+.||.+||+|+.
T Consensus 39 lLe~La~~Gy~ViA 52 (250)
T PF07082_consen 39 LLERLADRGYAVIA 52 (250)
T ss_pred HHHHHHhCCcEEEE
Confidence 45789999999998
No 340
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.25 E-value=1.6e+02 Score=28.79 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=40.7
Q ss_pred cceEEEEEeCCCCCCCcEEEeecccccccCCCCC-CCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEee
Q 007620 322 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 400 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~ 400 (595)
+.+|++.+|.+. .+.++||.....+...=-|. .-+-+.|-...|++...+ ++.. .-++.+
T Consensus 76 KYSHVH~yd~e~--~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D-Gh~n----------------LGvy~l 136 (339)
T PF09910_consen 76 KYSHVHEYDTEN--DSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD-GHAN----------------LGVYSL 136 (339)
T ss_pred ccceEEEEEcCC--CeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC-Ccce----------------eeeEEE
Confidence 567999999887 56788875544321000000 013344544444444322 1111 125678
Q ss_pred ecCCCceeeeeecC
Q 007620 401 DINTGSKERIWESN 414 (595)
Q Consensus 401 d~~~g~~~~l~~~~ 414 (595)
|.++|+.++|....
T Consensus 137 dr~~g~~~~L~~~p 150 (339)
T PF09910_consen 137 DRRTGKAEKLSSNP 150 (339)
T ss_pred cccCCceeeccCCC
Confidence 99999999887654
No 341
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=33.18 E-value=59 Score=31.11 Aligned_cols=20 Identities=10% Similarity=-0.112 Sum_probs=15.1
Q ss_pred HHHhccCeEEEeCCCCceeec
Q 007620 549 LIFLARRFAVLAGPSIPIIGE 569 (595)
Q Consensus 549 q~la~~GY~Vl~~~~~~~~~~ 569 (595)
.++..+||.|+. ++.|..|.
T Consensus 47 ~~l~~~g~~vi~-~d~~G~G~ 66 (288)
T TIGR01250 47 ELLKEEGREVIM-YDQLGCGY 66 (288)
T ss_pred HHHHhcCCEEEE-EcCCCCCC
Confidence 355556999999 88887664
No 342
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=32.75 E-value=45 Score=37.72 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=18.5
Q ss_pred hHHHhccCeEEEeCCCCceeecC
Q 007620 548 SLIFLARRFAVLAGPSIPIIGEG 570 (595)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~~~~ 570 (595)
.+.|+.+||.|+. +|.|..|..
T Consensus 469 A~~La~~Gy~VIa-iDlpGHG~S 490 (792)
T TIGR03502 469 AGTLAAAGVATIA-IDHPLHGAR 490 (792)
T ss_pred HHHHHhCCcEEEE-eCCCCCCcc
Confidence 4688899999999 999887764
No 343
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=32.73 E-value=1.8e+02 Score=21.08 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=15.3
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCC
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPG 504 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~ 504 (595)
...|...+++.||.-|.-+=+.+..
T Consensus 10 Y~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 10 YPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp ---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred CCcEEEEEEeCCCcEEEEEEccCCC
Confidence 3788999999999877766654443
No 344
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=32.44 E-value=84 Score=33.51 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=39.8
Q ss_pred EEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCch---hHHHh---ccCe
Q 007620 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS---SLIFL---ARRF 556 (595)
Q Consensus 483 e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~---~q~la---~~GY 556 (595)
....|.+..|.+|+...-.|++. +.+ |.||++|+ .+... ..|. ...|+ .+||
T Consensus 176 ~~~~~~~~~~~~l~~~~~gp~~~-~~k----~~VVLlHG--------------~~~s~---~~W~~~~~~~L~~~~~~~y 233 (481)
T PLN03087 176 FCTSWLSSSNESLFVHVQQPKDN-KAK----EDVLFIHG--------------FISSS---AFWTETLFPNFSDAAKSTY 233 (481)
T ss_pred eeeeeEeeCCeEEEEEEecCCCC-CCC----CeEEEECC--------------CCccH---HHHHHHHHHHHHHHhhCCC
Confidence 33466666778999999988863 212 56676553 22111 1121 12344 4799
Q ss_pred EEEeCCCCceeecC
Q 007620 557 AVLAGPSIPIIGEG 570 (595)
Q Consensus 557 ~Vl~~~~~~~~~~~ 570 (595)
.|+. +|.|..|.-
T Consensus 234 rVia-~Dl~G~G~S 246 (481)
T PLN03087 234 RLFA-VDLLGFGRS 246 (481)
T ss_pred EEEE-ECCCCCCCC
Confidence 9999 999988853
No 345
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.38 E-value=1.4e+02 Score=29.36 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=35.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEe
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
++......|.|+ ||..... + .-|-++|+-.|+.--++.... ....+.|+|.|.+++...
T Consensus 129 ~Vt~lsiHPS~K-LALsVg~-------D--~~lr~WNLV~Gr~a~v~~L~~-----~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 129 QVTDLSIHPSGK-LALSVGG-------D--QVLRTWNLVRGRVAFVLNLKN-----KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred ccceeEecCCCc-eEEEEcC-------C--ceeeeehhhcCccceeeccCC-----cceeeEEcCCCCEEEEEe
Confidence 466677777774 5665543 2 334444666665444444443 345689999999877753
No 346
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=31.85 E-value=1.1e+02 Score=31.59 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=36.2
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCc-h-hHHHhccCeE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT-S-SLIFLARRFA 557 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~-~-~q~la~~GY~ 557 (595)
.+.|...+++.||. |-.+==.|... + +.|+|+..|+=. .+-..|-...+. . +=+||.+||=
T Consensus 46 y~~E~h~V~T~DgY-iL~lhRIp~~~--~---~rp~Vll~HGLl-----------~sS~~Wv~n~p~~sLaf~LadaGYD 108 (403)
T KOG2624|consen 46 YPVEEHEVTTEDGY-ILTLHRIPRGK--K---KRPVVLLQHGLL-----------ASSSSWVLNGPEQSLAFLLADAGYD 108 (403)
T ss_pred CceEEEEEEccCCe-EEEEeeecCCC--C---CCCcEEEeeccc-----------cccccceecCccccHHHHHHHcCCc
Confidence 37899999999997 22222234432 2 238888766311 111122222211 1 2388999999
Q ss_pred EEe
Q 007620 558 VLA 560 (595)
Q Consensus 558 Vl~ 560 (595)
|.+
T Consensus 109 VWL 111 (403)
T KOG2624|consen 109 VWL 111 (403)
T ss_pred eee
Confidence 999
No 347
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=31.79 E-value=3e+02 Score=27.96 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=18.2
Q ss_pred CCeeecC-CCCeeeeeEECCCCCeEEEE
Q 007620 166 GTAKDFG-TPAVYTAVEPSPDQKYVLIT 192 (595)
Q Consensus 166 g~~~~lt-~~~~~~~~~~SpDg~~l~~~ 192 (595)
|..+.+. .-.+..++.||||+++|+..
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~Iita 169 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITA 169 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEe
Confidence 4444432 33456789999999888766
No 348
>PLN00193 expansin-A; Provisional
Probab=31.10 E-value=1.5e+02 Score=28.51 Aligned_cols=63 Identities=13% Similarity=-0.021 Sum_probs=40.0
Q ss_pred CCcceEEEEeCCC--CceeeEecCC-CCCCCcCCC--ceEEEEEECCCCcEEEEEEEcCCCCCCCCCC
Q 007620 449 TEITQYHILSWPL--KKSSQITNFP-HPYPTLASL--QKEMIKYQRKDGVPLTATLYLPPGYDQSKDG 511 (595)
Q Consensus 449 ~~p~~l~~~d~~~--~~~~~Lt~~~-~~~~~~~~~--~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y 511 (595)
....+|..++++. .++.++++.- .-|.....+ .+-.|++++.||.++-.+=+.|.++++|+.|
T Consensus 183 ~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty 250 (256)
T PLN00193 183 GGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTF 250 (256)
T ss_pred CCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeE
Confidence 3345555555543 2455555441 112222223 5777888999999999988899999998866
No 349
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=30.70 E-value=35 Score=33.39 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=27.7
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
..+.+.|.+.=..+..-++++|++|.+..|| |+++..++
T Consensus 68 ~~~~~~~~~~l~~~~~~vv~lppgy~~~~k~--pvl~~~DG 106 (299)
T COG2382 68 PVEEILYSSELLSERRRVVYLPPGYNPLEKY--PVLYLQDG 106 (299)
T ss_pred chhhhhhhhhhccceeEEEEeCCCCCccccc--cEEEEecc
Confidence 3444555444346788899999999986655 99998754
No 350
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=30.30 E-value=7.1e+02 Score=26.73 Aligned_cols=81 Identities=10% Similarity=0.057 Sum_probs=41.5
Q ss_pred eeEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.++++++. +|+.. .+++--....+....|+-+-. ..|... ...++-.++...+...++......
T Consensus 81 ~v~~ys~~----~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~---------ad~~v~~~~~~~~~~~~~~~~~~~- 145 (541)
T KOG4547|consen 81 SVLLYSVA----GGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVG---------ADLKVVYILEKEKVIIRIWKEQKP- 145 (541)
T ss_pred cEEEEEec----CCeEEEEEecCCCCCcceeeecccccC-ceEecC---------CceeEEEEecccceeeeeeccCCC-
Confidence 46677776 44443 333111111244444444433 334432 235566667766666666443221
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
.++++..+|||+.|+..
T Consensus 146 ---~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 146 ---LVSSLCISPDGKILLTA 162 (541)
T ss_pred ---ccceEEEcCCCCEEEec
Confidence 35678888888876653
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.11 E-value=1.7e+02 Score=31.27 Aligned_cols=66 Identities=12% Similarity=0.246 Sum_probs=44.4
Q ss_pred eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEE
Q 007620 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (595)
Q Consensus 23 ~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~ 102 (595)
.+|.++-...+...++||+.++++.-.. + ..|.++|...+.. ..+...- ....++|.|+|..++
T Consensus 252 svtsipL~s~v~~ca~sp~E~kLvlGC~--------D--gSiiLyD~~~~~t-~~~ka~~-----~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSEDKLVLGCE--------D--GSIILYDTTRGVT-LLAKAEF-----IPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEecCCcceEEecCcccceEEEEec--------C--CeEEEEEcCCCee-eeeeecc-----cceEEEEcCCCcEEE
Confidence 4455555556888899999999988764 2 4577778765533 3332221 245789999999877
Q ss_pred EE
Q 007620 103 FT 104 (595)
Q Consensus 103 ~~ 104 (595)
+.
T Consensus 316 V~ 317 (545)
T PF11768_consen 316 VG 317 (545)
T ss_pred EE
Confidence 75
No 352
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=29.14 E-value=2.1e+02 Score=29.81 Aligned_cols=63 Identities=16% Similarity=-0.092 Sum_probs=31.9
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCC-CceEecccC--------------CCccccccccceEEecC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFES--------------PDICLNAVFGSFVWVNN 97 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~--------------~~~~~~~~~~~~~Wspd 97 (595)
+....+|.|.++|++.. -...+|..+|+.. ..++.+-.. .+..+.++...++-|-|
T Consensus 314 itDI~iSlDDrfLYvs~---------W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~D 384 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSN---------WLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLD 384 (461)
T ss_dssp ---EEE-TTS-EEEEEE---------TTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TT
T ss_pred eEeEEEccCCCEEEEEc---------ccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccC
Confidence 57788999999887754 2457788888865 344444211 01112223457789999
Q ss_pred CcEEEEE
Q 007620 98 STLLIFT 104 (595)
Q Consensus 98 g~~l~~~ 104 (595)
||+|+++
T Consensus 385 GkRlYvT 391 (461)
T PF05694_consen 385 GKRLYVT 391 (461)
T ss_dssp SSEEEEE
T ss_pred CeEEEEE
Confidence 9999997
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=28.91 E-value=1.9e+02 Score=32.56 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=36.7
Q ss_pred eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCccccccccceEEecCCcEE
Q 007620 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLL 101 (595)
Q Consensus 23 ~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspdg~~l 101 (595)
+|..+......+-.+|.|.--.+|..+-..+. .+...||. ++|++. .+|..- .+.++.|.|..-.|
T Consensus 8 kIE~~Dsdavsti~SWHPsePlfAVA~fS~er----~GSVtIfa---dtGEPqr~Vt~P~------hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 8 KIEFLDSDAVSTISSWHPSEPLFAVASFSPER----GGSVTIFA---DTGEPQRDVTYPV------HATSLCWHPEEFVL 74 (1416)
T ss_pred eeecccccccccccccCCCCceeEEEEecCCC----CceEEEEe---cCCCCCcccccce------ehhhhccChHHHHH
Confidence 44433444345566899998877765543221 23445553 577753 333221 24578899876544
Q ss_pred E
Q 007620 102 I 102 (595)
Q Consensus 102 ~ 102 (595)
+
T Consensus 75 a 75 (1416)
T KOG3617|consen 75 A 75 (1416)
T ss_pred h
Confidence 3
No 354
>PLN00050 expansin A; Provisional
Probab=28.80 E-value=1.9e+02 Score=27.62 Aligned_cols=64 Identities=11% Similarity=0.006 Sum_probs=40.1
Q ss_pred CCCcceEEEEeCCCC--ceeeEecCCC-CCCCcCCC--ceEEEEEECCCCcEEEEEEEcCCCCCCCCCC
Q 007620 448 KTEITQYHILSWPLK--KSSQITNFPH-PYPTLASL--QKEMIKYQRKDGVPLTATLYLPPGYDQSKDG 511 (595)
Q Consensus 448 ~~~p~~l~~~d~~~~--~~~~Lt~~~~-~~~~~~~~--~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y 511 (595)
.....++..+++++. +++.+++.-. -|.....+ .+-.|++++.||.++-..=+.|.++++|+.|
T Consensus 174 v~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty 242 (247)
T PLN00050 174 VGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTY 242 (247)
T ss_pred cCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeE
Confidence 344555555554432 3555554311 12211223 5677888899999999988899999988766
No 355
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.01 E-value=6e+02 Score=25.08 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=28.7
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEec
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~ 225 (595)
..++.|+||.+.|+.+.+.. ..+.-++.+|.-.+.+.
T Consensus 88 vS~LTynp~~rtLFav~n~p------------~~iVElt~~GdlirtiP 124 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKP------------AAIVELTKEGDLIRTIP 124 (316)
T ss_pred ccceeeCCCcceEEEecCCC------------ceEEEEecCCceEEEec
Confidence 56899999999998886543 36777788888877763
No 356
>PRK05855 short chain dehydrogenase; Validated
Probab=27.96 E-value=88 Score=34.10 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=35.0
Q ss_pred ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCcee
Q 007620 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (595)
Q Consensus 488 ~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~ 567 (595)
...||.+|+.+.+-+ + +. |.||++| |.+.....+ ....+.| ++||-|+. +|.|..
T Consensus 8 ~~~~g~~l~~~~~g~----~--~~--~~ivllH--------------G~~~~~~~w-~~~~~~L-~~~~~Vi~-~D~~G~ 62 (582)
T PRK05855 8 VSSDGVRLAVYEWGD----P--DR--PTVVLVH--------------GYPDNHEVW-DGVAPLL-ADRFRVVA-YDVRGA 62 (582)
T ss_pred EeeCCEEEEEEEcCC----C--CC--CeEEEEc--------------CCCchHHHH-HHHHHHh-hcceEEEE-ecCCCC
Confidence 456999999876522 1 12 7788765 332211111 1123455 68999999 999988
Q ss_pred ecC
Q 007620 568 GEG 570 (595)
Q Consensus 568 ~~~ 570 (595)
|.-
T Consensus 63 G~S 65 (582)
T PRK05855 63 GRS 65 (582)
T ss_pred CCC
Confidence 753
No 357
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=27.49 E-value=1.8e+02 Score=25.71 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred EEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 485 v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
++.+..||..|-=.=| .++| |+|+|+||.-... |-.. ..-.++.+.|-|-..||.||-
T Consensus 72 ~tL~dedg~sisLkki-----t~nk----~vV~f~YP~asTP--------GCTk-QaCgFRDnY~k~kka~aeV~G 129 (211)
T KOG0855|consen 72 FTLKDEDGKSISLKKI-----TGNK----PVVLFFYPAASTP--------GCTK-QACGFRDNYEKFKKAGAEVIG 129 (211)
T ss_pred cccccCCCCeeeeeee-----cCCC----cEEEEEeccCCCC--------Cccc-ccccccccHHHHhhcCceEEe
Confidence 4667778877653322 3322 9999999863211 1111 111123445788888999995
No 358
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=27.44 E-value=24 Score=19.86 Aligned_cols=9 Identities=44% Similarity=0.988 Sum_probs=6.8
Q ss_pred eEEccCCCE
Q 007620 36 VSWSPDGKR 44 (595)
Q Consensus 36 ~~~SPDG~~ 44 (595)
-.|||||+.
T Consensus 6 t~FSp~Grl 14 (23)
T PF10584_consen 6 TTFSPDGRL 14 (23)
T ss_dssp TSBBTTSSB
T ss_pred eeECCCCeE
Confidence 468999973
No 359
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.30 E-value=3.1e+02 Score=28.67 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=36.1
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEe
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
.+...+||||.+.||..+.. ..-++ .+.-+.++.+....+-..-+..+-.|.|+.. +-|++..
T Consensus 68 ~I~SIkFSlDnkilAVQR~~--------~~v~f--~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTS--------KTVDF--CNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred ceeEEEeccCcceEEEEecC--------ceEEE--EecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe
Confidence 57788999999999998752 23444 4543333333322111111123458999977 5577753
No 360
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=26.34 E-value=61 Score=33.06 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=16.9
Q ss_pred EEEEc-CCCCCCCCCCCCcEEEEeccC
Q 007620 497 ATLYL-PPGYDQSKDGPLPCLFWAYPE 522 (595)
Q Consensus 497 g~l~~-P~~~~~~k~y~lP~vv~~y~~ 522 (595)
-||++ |..+++.. - |+|||.|+|
T Consensus 108 ~Wlvk~P~~~~pk~-D--pVlIYlHGG 131 (374)
T PF10340_consen 108 YWLVKAPNRFKPKS-D--PVLIYLHGG 131 (374)
T ss_pred EEEEeCCcccCCCC-C--cEEEEEcCC
Confidence 48887 88877742 2 999998754
No 361
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.88 E-value=4e+02 Score=25.73 Aligned_cols=83 Identities=13% Similarity=-0.043 Sum_probs=51.1
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
|...||.++.+ +|+..+-....+ .--..++..+||..|+-.+ ...++|.+|..+..-.--.+..+
T Consensus 71 y~g~lYfl~~~----tGs~~w~f~~~~-~vk~~a~~d~~~glIycgs----------hd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 71 YSGGLYFLCVK----TGSQIWNFVILE-TVKVRAQCDFDGGLIYCGS----------HDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ccCcEEEEEec----chhheeeeeehh-hhccceEEcCCCceEEEec----------CCCcEEEecccccceEEecccCC
Confidence 67789999998 775544332222 2456899999998665543 23678999987654222122222
Q ss_pred ccccccccceEEecCCcEEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+.+.++...|-...|++.
T Consensus 136 ----~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 136 ----GTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred ----ceeccceecCCCceEEEE
Confidence 134577788755556665
No 362
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.65 E-value=2.2e+02 Score=31.32 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=34.0
Q ss_pred cceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007620 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.--.++-.+++|++-++ ..-||+++..+|+.+.+.+... ........-|++..++++
T Consensus 37 ~lTc~dst~~~l~~GsS----------~G~lyl~~R~~~~~~~~~~~~~---~~~~~~~~vs~~e~lvAa 93 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSS----------AGSVYLYNRHTGEMRKLKNEGA---TGITCVRSVSSVEYLVAA 93 (726)
T ss_pred EEEEeecCCceEEEecc----------cceEEEEecCchhhhcccccCc---cceEEEEEecchhHhhhh
Confidence 33466777888888664 3679999998888777754221 001223445555554444
No 363
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=25.08 E-value=1.6e+02 Score=32.94 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=39.7
Q ss_pred CCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+....||+||..|+ ... ...-|.++.+++++.+-| +. +++.+-.+.||||+......
T Consensus 250 H~~~V~~L~fS~~G~~Ll-SGG---------~E~VLv~Wq~~T~~kqfL---PR--Lgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLL-SGG---------REGVLVLWQLETGKKQFL---PR--LGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred cccccceeEEecCCceEe-ecc---------cceEEEEEeecCCCcccc---cc--cCCeeEEEEEcCCCCeEEEE
Confidence 334688899999998653 221 235566667778874444 22 22356689999999865544
No 364
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=24.95 E-value=1.1e+02 Score=28.06 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=31.9
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
++.|.+.+.-| .|++....+. . + ..|+.|-+||+|-. ||-. .+--.+.-+..|..+||+++.
T Consensus 4 ~~~v~i~Gp~G-~le~~~~~~~--~--~--~~~iAli~HPHPl~---------gGtm-~nkvv~~la~~l~~~G~atlR 65 (210)
T COG2945 4 MPTVIINGPAG-RLEGRYEPAK--T--P--AAPIALICHPHPLF---------GGTM-NNKVVQTLARALVKRGFATLR 65 (210)
T ss_pred CCcEEecCCcc-cceeccCCCC--C--C--CCceEEecCCCccc---------cCcc-CCHHHHHHHHHHHhCCceEEe
Confidence 34455555544 4566554333 1 1 33777777776432 3321 000001123478888999998
No 365
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=24.88 E-value=5.3e+02 Score=23.49 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=39.4
Q ss_pred ccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
|-+|++=|.+-..+++ ++.++-..||+.++.+++..+|--..... ....-...|..|..+++..
T Consensus 66 s~~~~~saciegkg~~-a~eEgiGkIYIkn~~~~~~~~L~i~~~~~-k~sPK~i~WiDD~~L~vII 129 (200)
T PF15525_consen 66 SENGKYSACIEGKGPE-AEEEGIGKIYIKNLNNNNWWSLQIDQNEE-KYSPKYIEWIDDNNLAVII 129 (200)
T ss_pred ccCCceeEEEEcCCCc-cccccceeEEEEecCCCceEEEEecCccc-ccCCceeEEecCCcEEEEE
Confidence 5568877777655432 22356789999999999876662211100 0011267899998877665
No 366
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=24.84 E-value=6.9e+02 Score=24.95 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=40.4
Q ss_pred cccceEEccCCCEEEEEEeccc-ccccC-----CCceEEEEEECCC-Cc-eEecccCCCc----cccccccceEEecCCc
Q 007620 32 KINFVSWSPDGKRIAFSVRVDE-EDNVS-----SCKLRVWIADAET-GE-AKPLFESPDI----CLNAVFGSFVWVNNST 99 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~-~~~~~-----~~~~~L~v~d~~~-g~-~~~lt~~~~~----~~~~~~~~~~Wspdg~ 99 (595)
......++|||+.|+.+....- .++.. .....|+.++.++ ++ ..+....-+. .....++.+.+.+|++
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 5677899999997777665431 11100 0125677888775 32 2222111110 0112567899999999
Q ss_pred EEEEE
Q 007620 100 LLIFT 104 (595)
Q Consensus 100 ~l~~~ 104 (595)
.|+.-
T Consensus 228 lLvLE 232 (326)
T PF13449_consen 228 LLVLE 232 (326)
T ss_pred EEEEE
Confidence 65553
No 367
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=24.68 E-value=2.5e+02 Score=27.90 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=44.9
Q ss_pred CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+..++..++-|+--.|....+. + ..|-+.++.+.....++..-++. ...+-+..|+.||.+|+-.
T Consensus 135 G~sINeik~~p~~~qlvls~Sk-------D--~svRlwnI~~~~Cv~VfGG~egH-rdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASK-------D--HSVRLWNIQTDVCVAVFGGVEGH-RDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred CccchhhhcCCCCCcEEEEecC-------C--ceEEEEeccCCeEEEEecccccc-cCcEEEEEEcCCCCeeecc
Confidence 3468899999999888777654 2 34555588888888876544321 1134488999999987664
No 368
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.43 E-value=3.2e+02 Score=31.15 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=37.1
Q ss_pred EEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEec
Q 007620 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
..|||.+.+++.....+. -........++.++.++. .......+ +..++.+.|+|.+..|+|+..
T Consensus 103 ~~s~d~~~~~~~~~~~~~-~rhs~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKR-FRHSYTAKYHLYDLNTGE-KLHPPEYE---GSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred ccChhhhhheeccCcccc-cceeeEEEEEEEEcCCCC-cccCcccC---CCeeEEEEEcCCCCEEEEEEe
Confidence 678899988887653110 000123445566666665 11111111 113567899999999998744
No 369
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=24.31 E-value=7e+02 Score=24.63 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=39.1
Q ss_pred ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007620 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (595)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~ 99 (595)
..+|...|.. .++..+|||.++.|+..+ - + ..|-++++...+.++...... .+-.+.|.++.+
T Consensus 5 ~~~l~npP~d-~IS~v~f~~~~~~LLvss-W-------D--gslrlYdv~~~~l~~~~~~~~-----plL~c~F~d~~~ 67 (323)
T KOG1036|consen 5 EFELENPPED-GISSVKFSPSSSDLLVSS-W-------D--GSLRLYDVPANSLKLKFKHGA-----PLLDCAFADEST 67 (323)
T ss_pred ccccCCCChh-ceeeEEEcCcCCcEEEEe-c-------c--CcEEEEeccchhhhhheecCC-----ceeeeeccCCce
Confidence 4455543443 699999999999887765 2 3 345566776666666654443 344556665444
No 370
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=23.81 E-value=3e+02 Score=21.44 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCeeecCCC-CeeeeeEECCCCCeEEEEEcc
Q 007620 157 AQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (595)
Q Consensus 157 ~~l~~~d~~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~ 195 (595)
+.+.-+|. ++.+.+..+ ....++..|||+++|++++..
T Consensus 36 ~~Vvyyd~-~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~ 74 (86)
T PF01731_consen 36 GNVVYYDG-KEVKVVASGFSFANGIAISPDKKYLYVASSL 74 (86)
T ss_pred ceEEEEeC-CEeEEeeccCCCCceEEEcCCCCEEEEEecc
Confidence 34444442 234444443 233588999999999988754
No 371
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=23.33 E-value=54 Score=25.67 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=15.9
Q ss_pred ccceEEccCCCEEEEEEec
Q 007620 33 INFVSWSPDGKRIAFSVRV 51 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~ 51 (595)
...-.|||||+.++|-...
T Consensus 15 ~AAGefs~DGkLv~Ykgdm 33 (109)
T COG4831 15 MAAGEFSPDGKLVEYKGDM 33 (109)
T ss_pred eEeceeCCCCceEEeeCCC
Confidence 6677899999999997754
No 372
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.81 E-value=4.3e+02 Score=25.95 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=39.6
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCC-----cccceEEccC----CCEEEEEEecccccccCCCceEEEEEECCCCceE
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA-----KINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~-----~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (595)
+-|.+.||+ +++..+...++..- ....+++... ++..||++.. ....|.|+|+++|+.+
T Consensus 34 pKLv~~Dl~----t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~--------~~~glIV~dl~~~~s~ 101 (287)
T PF03022_consen 34 PKLVAFDLK----TNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS--------GGPGLIVYDLATGKSW 101 (287)
T ss_dssp -EEEEEETT----TTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET--------TTCEEEEEETTTTEEE
T ss_pred cEEEEEECC----CCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC--------CcCcEEEEEccCCcEE
Confidence 568888888 55554333355331 3445566552 2378999864 3468999999999988
Q ss_pred eccc
Q 007620 76 PLFE 79 (595)
Q Consensus 76 ~lt~ 79 (595)
++..
T Consensus 102 Rv~~ 105 (287)
T PF03022_consen 102 RVLH 105 (287)
T ss_dssp EEET
T ss_pred EEec
Confidence 8853
No 373
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=22.53 E-value=2.9e+02 Score=28.82 Aligned_cols=59 Identities=20% Similarity=0.379 Sum_probs=35.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+...+.||+|+.||+... ...||++..+-.+...-.+... ......+.|--++..++.
T Consensus 218 ~i~~iavSpng~~iAl~t~----------~g~l~v~ssDf~~~~~e~~~~~---~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTD----------SGNLWVVSSDFSEKLCEFDTDS---KSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred CeEEEEECCCCCEEEEEEC----------CCCEEEEECcccceeEEeecCc---CCCCcEEEEECCCcEEEE
Confidence 5778899999999999874 2567887755433211111110 013457889977654433
No 374
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=21.58 E-value=65 Score=31.13 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHHhccCeEEEeCCCCceeecC
Q 007620 549 LIFLARRFAVLAGPSIPIIGEG 570 (595)
Q Consensus 549 q~la~~GY~Vl~~~~~~~~~~~ 570 (595)
..+++.||.|+. +|.|..|.-
T Consensus 54 ~~l~~~~~~vi~-~D~~G~G~S 74 (282)
T TIGR03343 54 GPFVDAGYRVIL-KDSPGFNKS 74 (282)
T ss_pred HHHHhCCCEEEE-ECCCCCCCC
Confidence 457778999999 999887753
No 375
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.36 E-value=3.9e+02 Score=26.35 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=42.6
Q ss_pred eeecCCCceeeeeecCcc---ccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCC
Q 007620 399 LFDINTGSKERIWESNRE---KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFP 471 (595)
Q Consensus 399 ~~d~~~g~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~ 471 (595)
.+|+.+++++-||+.+.. .+...+..+ -+.|-.+.|++.+..--.---+|..+..+++.++|.+..
T Consensus 82 ~yd~e~~~VrLLWkesih~~~~WaGEVSdI-------lYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~p 150 (339)
T PF09910_consen 82 EYDTENDSVRLLWKESIHDKTKWAGEVSDI-------LYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNP 150 (339)
T ss_pred EEEcCCCeEEEEEecccCCccccccchhhe-------eeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCC
Confidence 357778888888876532 122233322 245656788887754433333888998899999998763
No 376
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=21.29 E-value=1.1e+02 Score=28.86 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=33.8
Q ss_pred EEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 485 v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
+.....||..+.|..+--.+-. +. =++|.+- +--...++...++..+.+||.|+.
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~~~---~g--~~~va~a----------------~Gv~~~fYRrfA~~a~~~Gf~Vlt 62 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADGKA---SG--RLVVAGA----------------TGVGQYFYRRFAAAAAKAGFEVLT 62 (281)
T ss_pred cccccCCCccCccccccCCCCC---CC--cEEeccc----------------CCcchhHhHHHHHHhhccCceEEE
Confidence 5677889999999887333311 11 3555431 111122333457899999999997
No 377
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=20.89 E-value=9e+02 Score=24.68 Aligned_cols=120 Identities=13% Similarity=0.228 Sum_probs=60.1
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.+.++.|||.-+.++++..-. ..|-+||+..+ +...+.... ....+-.++|+.+-.
T Consensus 259 SVEDLqWSptE~~vfaScS~D------------gsIrIWDiRs~~~~~~~~~kA-----------h~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSCD------------GSIRIWDIRSGPKKAAVSTKA-----------HNSDVNVISWNRREP 315 (440)
T ss_pred chhhhccCCccCceEEeeecC------------ceEEEEEecCCCccceeEeec-----------cCCceeeEEccCCcc
Confidence 455889999988887775432 36778898754 222221110 001122367875533
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc-cCccccceeecCCCcEEEEEEeecccceEEEEEeCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~ 332 (595)
.|+. ..|. ..+.++|+--++.+++...+. ....++.+.|+|....++.... .+.+..||-+.++
T Consensus 316 -lLas--G~Dd----------Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiWDlsvE 380 (440)
T KOG0302|consen 316 -LLAS--GGDD----------GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIWDLSVE 380 (440)
T ss_pred -eeee--cCCC----------ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEEEeecc
Confidence 1211 1122 234444441244455554333 4556889999997543322221 2344466655443
Done!