BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007621
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 298
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 13/179 (7%)
Query: 122 LSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPR-HLMFLSDDEVLLD 180
LSKI+ + L+R I + F + +G+ ++L L + H +F D E L
Sbjct: 47 LSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKT 106
Query: 181 NFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYE-NLGLSKNTVIKLVSCCPS 239
L ++ + +M +A + L ++L ++ L LS LV P
Sbjct: 107 RVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPR 166
Query: 240 LLIGGVDSRFVKVLEKLK----ELGFKNDWIGRY---LPGKGSYNWDQVSETLDFLYKI 291
LL G ++ V E +K ELGFK++ I +P + N +++ET DF++ +
Sbjct: 167 LLTGSLEP----VKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNV 221
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 478 VQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRI 537
++ G N +++++ R P +L +K L + D++ N + P +V FP + ++
Sbjct: 184 LELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKV 243
Query: 538 NHRCKMYVWL--RERGVAKPT-LSLSTILACSDAKF 570
R +L + AKP +SL +++ D F
Sbjct: 244 KERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIF 279
>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 270
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 13/179 (7%)
Query: 122 LSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPR-HLMFLSDDEVLLD 180
LSKI+ + L+R I + F + +G+ ++L L + H +F D E L
Sbjct: 19 LSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKT 78
Query: 181 NFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYE-NLGLSKNTVIKLVSCCPS 239
L ++ + +M +A + L ++L ++ L LS LV P
Sbjct: 79 RVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPR 138
Query: 240 LLIGGVDSRFVKVLEKLK----ELGFKNDWIGRY---LPGKGSYNWDQVSETLDFLYKI 291
LL G ++ V E +K ELGFK++ I +P + N +++ET DF++ +
Sbjct: 139 LLTGSLEP----VKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNV 193
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 478 VQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRI 537
++ G N +++++ R P +L +K L + D++ N + P +V FP + ++
Sbjct: 156 LELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKV 215
Query: 538 NHRCKMYVWL--RERGVAKPT-LSLSTILACSDAKF 570
R +L + AKP +SL +++ D F
Sbjct: 216 KERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIF 251
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++LQ VG L I GMK ++NM +H +L L VC KV L ++++DDP
Sbjct: 145 SVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVC---KVSDFGLSRVLEDDP 201
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F HD ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 217 VFSHDDYLIAKELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 272
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
N ++ +P + +D++++ LD + K G
Sbjct: 273 NKYVRAIVPDQ---TFDELNQMLDNMRKAG 299
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F HD ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 217 VFSHDDYLIAKELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 272
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
N ++ +P + +D++++ LD + K G
Sbjct: 273 NKYVRAIVPDQ---TFDELNQMLDNMRKAG 299
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F HD ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 223 VFSHDDYLIAKELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 278
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
N ++ +P + +D++++ LD + K G
Sbjct: 279 NKYVRAIVPDQ---TFDELNQMLDNMRKAG 305
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L IG GMK +S+M +H +L L VC KV + ++++DDP
Sbjct: 129 TVIQLVGMLRGIGSGMKYLSDMSAVHRDLAARNILVNSNLVC---KVSDFGMSRVLEDDP 185
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L IG GMK +S+M +H +L L VC KV + ++++DDP
Sbjct: 114 TVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVC---KVSDFGMSRVLEDDP 170
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L IG GMK +S+M +H +L L VC KV + ++++DDP
Sbjct: 108 TVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVC---KVSDFGMSRVLEDDP 164
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L +G GM+ +S++ +H +L L VC KV L ++++DDP
Sbjct: 149 TIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVC---KVSDFGLSRVLEDDP 205
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 145 TVIQLVGMLRGIASGMKYLSDMGFVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 201
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L +G GM+ +S++ +H +L L VC KV L ++++DDP
Sbjct: 149 TIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVC---KVSDFGLSRVLEDDP 205
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 145 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLARVLEDDP 201
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 143 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 199
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 145 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 201
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 145 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 201
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 145 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 201
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 145 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 201
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 145 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 201
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 145 TVIQLVGMLRGIASGMKYLSDMGAVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 201
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 116 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 172
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GM+ +++M +H +L L VC KV L ++I+DDP
Sbjct: 143 TVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVC---KVSDFGLSRVIEDDP 199
Query: 412 LKLF 415
++
Sbjct: 200 EAVY 203
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 116 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 172
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 133 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 189
>pdb|1D5I|H Chain H, Unliganded Germline Precursor Of An Oxy-Cope Catalytic
Antibody
pdb|1D6V|H Chain H, Conformation Effects In Biological Catalysis Introduced By
Oxy-Cope Antibody Maturation
Length = 221
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 264 DWIGRYLPGKGSYNWDQ-----VSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVY 318
+WIG LPG GS N+++ + T D Y +QL +L + A+ + G Y
Sbjct: 46 EWIGEILPGSGSTNYNEKFKGKATFTADTSSNTAY--MQLSSLTSEDSAVYYCARGHSYY 103
Query: 319 VLFGRLLKLGLKMNEVYSLFSQNPQIL----SSKFVKNLLQAVGFLIE 362
G G + V S ++ P + SSK A+G L++
Sbjct: 104 FYDGDYWGQGTSVT-VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 150
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 122 TVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 178
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 145 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLGRVLEDDP 201
>pdb|3GYC|A Chain A, Crystal Structure Of Putative Glycoside Hydrolase
(Yp_001304622.1) From Parabacteroides Distasonis Atcc
8503 At 1.85 A Resolution
pdb|3GYC|B Chain B, Crystal Structure Of Putative Glycoside Hydrolase
(Yp_001304622.1) From Parabacteroides Distasonis Atcc
8503 At 1.85 A Resolution
Length = 393
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 265 WIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQK 316
W+ R PG G +WDQV LD L + GYN +++ P L+ E +K
Sbjct: 26 WLERRWPGAGYEDWDQV---LDELSERGYNAIRI----DAYPHLIAENPXKK 70
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 134 SLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHL--MFLSDDEVLLDNFHVLCDYG 189
S + ++ NP+ +++ +F+ G++++EL L R +F + DE +L + H +C+ G
Sbjct: 370 SPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVL-SMHKVCEAG 426
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 134 SLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHL--MFLSDDEVLLDNFHVLCDYG 189
S + ++ NP+ +++ +F+ G++++EL L R +F + DE +L + H +C+ G
Sbjct: 151 SPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVL-SMHKVCEAG 207
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 134 SLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHL--MFLSDDEVLLDNFHVLCDYG 189
S + ++ NP+ +++ +F+ G++++EL L R +F + DE +L + H +C+ G
Sbjct: 166 SPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVL-SMHKVCEAG 222
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +++M +H +L L VC G + DP
Sbjct: 133 TVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 192
Query: 412 LKLFHLASKTEVK 424
L K ++
Sbjct: 193 TYTSALGGKIPIR 205
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 359 FLIEIGMGMKDISNMVLMHAELMG-SCSLKGPKTVC 393
F+++I +GM+ +SN +H +L +C L+ TVC
Sbjct: 152 FMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVC 187
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 350 VKNLLQAVGFLIE--IGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQII 407
VK +LQ LI+ G G S ++ H G+ GP VC+ + + L + I
Sbjct: 365 VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGN----GPVLVCAPSNIAVDQLTEKI 420
Query: 408 KDDPLKLFHLASKTEVKIDEQV 429
LK+ L +K+ ID V
Sbjct: 421 HQTGLKVVRLCAKSREAIDSPV 442
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 29/73 (39%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GM+ ++ M +H +L L VC G + DP
Sbjct: 116 TVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDP 175
Query: 412 LKLFHLASKTEVK 424
+ L K ++
Sbjct: 176 TETSSLGGKIPIR 188
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 350 VKNLLQAVGFLIE--IGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQII 407
VK +LQ LI+ G G S ++ H G+ GP VC+ + + L + I
Sbjct: 189 VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGN----GPVLVCAPSNIAVDQLTEKI 244
Query: 408 KDDPLKLFHLASKTEVKIDEQV 429
LK+ L +K+ ID V
Sbjct: 245 HQTGLKVVRLCAKSREAIDSPV 266
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 350 VKNLLQAVGFLIE--IGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQII 407
VK +LQ LI+ G G S ++ H G+ GP VC+ + + L + I
Sbjct: 188 VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGN----GPVLVCAPSNIAVDQLTEKI 243
Query: 408 KDDPLKLFHLASKTEVKIDEQV 429
LK+ L +K+ ID V
Sbjct: 244 HQTGLKVVRLCAKSREAIDSPV 265
>pdb|2J7U|A Chain A, Dengue Virus Ns5 Rna Dependent Rna Polymerase Domain
pdb|2J7W|A Chain A, Dengue Virus Ns5 Rna Dependent Rna Polymerase Domain
Complexed With 3'dgtp
Length = 635
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 245 VDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQV 281
+D RF L L ++G I ++ P KG ++W QV
Sbjct: 405 IDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQV 441
>pdb|3VWS|A Chain A, Dengue Serotype 3 Rna-dependent Rna Polymerase Bound To
Nitd-107
pdb|4HHJ|A Chain A, Dengue Serotype 3 Rna-dependent Rna Polymerase
Length = 635
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 245 VDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQV 281
+D RF L L ++G I ++ P KG ++W QV
Sbjct: 405 IDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQV 441
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +++M +H L L VC G + DP
Sbjct: 107 TVIQLVGMLRGIAAGMKYLADMNYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 166
Query: 412 LKLFHLASKTEVK 424
L K ++
Sbjct: 167 TYTSALGGKIPIR 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,359,535
Number of Sequences: 62578
Number of extensions: 663272
Number of successful extensions: 2005
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1985
Number of HSP's gapped (non-prelim): 47
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)