BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007621
(595 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 135/317 (42%), Gaps = 53/317 (16%)
Query: 277 NWDQVSETLDFLYKIGYNE-VQLLNLFKTNPALVFEGSGQKVYV----LFGRLLKLGLKM 331
+WD V + L +I E V+++ +P L + S + YV +L+ LG+ +
Sbjct: 100 DWDDVPPS-SALEEISEEEAVKII----ADPLLPPQSSTLRDYVDHSETLTKLVHLGVDL 154
Query: 332 NEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKT 391
++V +L+ F K++ + + FL ++G+ + + + ++G L+ +T
Sbjct: 155 SQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGE-ELEALET 213
Query: 392 VCSKLK---VGRESLCQIIKDDP-LKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRL 447
+ LK G + Q++ P L LF + E++D RL
Sbjct: 214 RVAYLKSKKFGNAEITQMVSRAPYLLLFSV---------ERLDN--------------RL 250
Query: 448 GYVEN----SEEVTKAL-----KQFRGRGDQLQERFD-CLVQAGLDSNVVRNIVKRAPMV 497
G+ +N S + TK L + G+ + ++E C V+ G + N V+ I + P +
Sbjct: 251 GFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVCQVEFGFERNEVQQIAFKTPKI 310
Query: 498 LNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPT- 556
L SK L + DYL N + P + FP + RI R M++ R PT
Sbjct: 311 LTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKLLRIKER-HMFLIFLGRAQYDPTK 369
Query: 557 ---LSLSTILACSDAKF 570
+SL +++ D F
Sbjct: 370 PSYISLDQLVSLPDEVF 386
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 122 LSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDN 181
LSKI+ DV L+R I + F + LGL ++L P L ++ S+D L+N
Sbjct: 158 LSKIEKHPDVANLLLRLNFEKDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSED---LEN 214
Query: 182 FHVLCDY----GIPRSKMGKMYVEATEIFRHDRGVLASKLWAYE-NLGLSKNTVIKLVSC 236
Y ++ + M A + L ++L ++ L LS LV
Sbjct: 215 LKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLVVR 274
Query: 237 CPSLLIGGVDSRFVKVLEKLK----ELGFKNDWIGRY---LPGKGSYNWDQVSETLDFLY 289
P LL G ++ V E +K ELGFK++ I +P + N +++ET D+++
Sbjct: 275 LPRLLTGSLEP----VKENMKVYRLELGFKHNEIQHMVTKIPKMLTANKRKLTETFDYVH 330
Query: 290 KI 291
+
Sbjct: 331 NV 332
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 478 VQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRI 537
++ G N ++++V + P +L +K L + DY+ N + P +V FP + +I
Sbjct: 295 LELGFKHNEIQHMVTKIPKMLTANKRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVFKI 354
Query: 538 NHRCKMYVWL--RERGVAKPT-LSLSTILACSDAKF 570
R +L + AKP +SL ++ D F
Sbjct: 355 KERHLFLAYLGKAQYDPAKPNYVSLDKFVSFPDEVF 390
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 19/182 (10%)
Query: 122 LSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDN 181
LSKI+ D L+R I + F + LGL ++L P L ++ S+D L+N
Sbjct: 161 LSKIEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSED---LEN 217
Query: 182 FHVLCDY----GIPRSKMGKMYVEATEIFRHDRGVLASKLWAYE-NLGLSKNTVIKLVSC 236
Y ++ + +M A + L ++L ++ L L+ LV
Sbjct: 218 LKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVERLDNRLGFFQKELELNVKKTRDLVVR 277
Query: 237 CPSLLIGGVDSRFVKVLEKLK----ELGFKNDWIGRY---LPGKGSYNWDQVSETLDFLY 289
P LL G ++ V E +K ELGFK++ I +P + N +++E D+++
Sbjct: 278 LPRLLTGSLEP----VKENMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVH 333
Query: 290 KI 291
+
Sbjct: 334 NV 335
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 478 VQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRI 537
++ G N ++++V + P +L +K L + DY+ N + P +V FP + +I
Sbjct: 298 LELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVFKI 357
Query: 538 NHRCKMYVWL--RERGVAKPT-LSLSTILACSDAKF 570
R +L + AKP +SL ++ D F
Sbjct: 358 KERHLFLAYLGRAQYDPAKPNYVSLDKFVSFPDKIF 393
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 13/179 (7%)
Query: 122 LSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPR-HLMFLSDDEVLLD 180
LSKI+ + L+R I + F + +G+ ++L L + H +F D E L
Sbjct: 166 LSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKT 225
Query: 181 NFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYE-NLGLSKNTVIKLVSCCPS 239
L ++ + +M +A + L ++L ++ L LS LV P
Sbjct: 226 RVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPR 285
Query: 240 LLIGGVDSRFVKVLEKLK----ELGFKNDWIGRY---LPGKGSYNWDQVSETLDFLYKI 291
LL G ++ V E +K ELGFK++ I +P + N +++ET DF++ +
Sbjct: 286 LLTGSLEP----VKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNV 340
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 478 VQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRI 537
++ G N +++++ R P +L +K L + D++ N + P +V FP + ++
Sbjct: 303 LELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKV 362
Query: 538 NHRCKMYVWL--RERGVAKPT-LSLSTILACSDAKF 570
R +L + AKP +SL +++ D F
Sbjct: 363 KERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIF 398
>sp|Q1KL86|EPHA2_MACFA Ephrin type-A receptor 2 OS=Macaca fascicularis GN=EPHA2 PE=2 SV=1
Length = 976
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 290 KIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKF 349
K GY E Q ++ F ++ + S + L G + K M + + F +N + KF
Sbjct: 649 KAGYTEKQRVD-FLGEAGIMGQFSHHNIIRLEGVISKYKPMM--IITEFMENGAL--DKF 703
Query: 350 VK------NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESL 403
++ ++LQ VG L I GMK ++NM +H +L L VC KV L
Sbjct: 704 LREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVC---KVSDFGL 760
Query: 404 CQIIKDDP 411
++++DDP
Sbjct: 761 SRVLEDDP 768
>sp|Q03145|EPHA2_MOUSE Ephrin type-A receptor 2 OS=Mus musculus GN=Epha2 PE=1 SV=3
Length = 977
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 290 KIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKF 349
K GY E Q ++ F + +++ + S + L G + K M + + + +N + KF
Sbjct: 650 KAGYTEKQRVD-FLSEASIMGQFSHHNIIRLEGVVSKYKPMM--IITEYMENGAL--DKF 704
Query: 350 VK------NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESL 403
++ ++LQ VG L I GMK ++NM +H +L L VC KV L
Sbjct: 705 LREKDGEFSVLQLVGMLRGIASGMKYLANMNYVHRDLAARNILVNSNLVC---KVSDFGL 761
Query: 404 CQIIKDDP 411
++++DDP
Sbjct: 762 SRVLEDDP 769
>sp|P29317|EPHA2_HUMAN Ephrin type-A receptor 2 OS=Homo sapiens GN=EPHA2 PE=1 SV=2
Length = 976
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 290 KIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKF 349
K GY E Q ++ F ++ + S + L G + K M + + + +N + KF
Sbjct: 649 KAGYTEKQRVD-FLGEAGIMGQFSHHNIIRLEGVISKYKPMM--IITEYMENGAL--DKF 703
Query: 350 VK------NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESL 403
++ ++LQ VG L I GMK ++NM +H +L L VC KV L
Sbjct: 704 LREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVC---KVSDFGL 760
Query: 404 CQIIKDDP 411
++++DDP
Sbjct: 761 SRVLEDDP 768
>sp|A2T3S0|RDRP_ROTSH RNA-directed RNA polymerase OS=Rotavirus A (isolate Monkey/South
Africa/SA11-H96/1958
G3-P5B[2]-I2-R2-C5-M5-A5-N5-T5-E2-H5) PE=1 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F HD ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 217 VFSHDDYLIAKELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 272
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
N ++ +P + +D++++ LD + K G
Sbjct: 273 NKYVRAIVPDQ---TFDELNQMLDNMRKAG 299
>sp|P54764|EPHA4_HUMAN Ephrin type-A receptor 4 OS=Homo sapiens GN=EPHA4 PE=1 SV=1
Length = 986
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 353 LLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L IG GMK +S+M +H +L L VC KV + ++++DDP
Sbjct: 720 VIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVC---KVSDFGMSRVLEDDP 775
>sp|O37061|RDRP_ROTSP RNA-directed RNA polymerase OS=Rotavirus A (strain SA11-Patton
G3-Px[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx) PE=1 SV=2
Length = 1088
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F HD ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 217 VFSHDDYLIAKELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 272
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
N ++ +P + +D++++ LD + K G
Sbjct: 273 NKYVRAIVPDQ---TFDELNQMLDNMRKAG 299
>sp|Q03137|EPHA4_MOUSE Ephrin type-A receptor 4 OS=Mus musculus GN=Epha4 PE=1 SV=2
Length = 986
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 353 LLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L IG GMK +S+M +H +L L VC KV + ++++DDP
Sbjct: 720 VIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVC---KVSDFGMSRVLEDDP 775
>sp|Q3ZK55|RDRP_ROT41 RNA-directed RNA polymerase OS=Rotavirus A (isolate
Human/Belgium/B4106/2000
G3-P11[14]-I2-R2-C2-M3-A9-N2-T6-E5-H3) PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 165 LPRH-LMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKL--WAYE 221
+PRH + D EV+ D + L + +M +F H+ ++A +L +Y
Sbjct: 182 VPRHNAKYRYDYEVMKDKPYYLVTWANSSIEM------LMSVFSHEDYLIARELIVLSYS 235
Query: 222 NLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQV 281
N ++T+ KLVS S+L+ VD + + EL F N ++ +P + +D++
Sbjct: 236 N----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVPDQ---TFDEL 288
Query: 282 SETLDFLYKIGYNEV 296
+ +D + K G ++
Sbjct: 289 KQMIDNMRKAGLTDI 303
>sp|Q91694|EPA4B_XENLA Ephrin type-A receptor 4-B OS=Xenopus laevis GN=epha4-b PE=2 SV=1
Length = 985
Score = 35.8 bits (81), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L IG GMK +S+M +H +L L VC KV + ++++DDP
Sbjct: 718 TVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVC---KVSDFGMSRVLEDDP 774
>sp|Q91845|EPA4A_XENLA Ephrin type-A receptor 4-A OS=Xenopus laevis GN=epha4-a PE=2 SV=1
Length = 986
Score = 35.8 bits (81), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L IG GMK +S+M +H +L L VC KV + ++++DDP
Sbjct: 718 TVIQLVGILRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVC---KVSDFGMSRVLEDDP 774
>sp|Q07496|EPHA4_CHICK Ephrin type-A receptor 4 OS=Gallus gallus GN=EPHA4 PE=1 SV=2
Length = 986
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 353 LLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L IG GMK +S+M +H +L L VC KV + ++++DDP
Sbjct: 720 VIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVC---KVSDFGMSRVLEDDP 775
>sp|P22678|RDRP_ROTS1 RNA-directed RNA polymerase OS=Rotavirus A (strain SA11-Both
G3-P5B[2]-I2-R2-C5-M5-A5-N2-T5-E2-H5) PE=3 SV=1
Length = 1088
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F HD ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 217 VFSHDDYLIAKELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 272
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
N ++ +P + +D++++ LD + K G
Sbjct: 273 NKYLRAIVPDQ---TFDELNQMLDNMRKAG 299
>sp|A4ZCW2|RDRP_ROTH3 RNA-directed RNA polymerase OS=Rotavirus A (strain
Human/Japan/AU-1/1982
G3-P3[9]-I3-R3-C3-M3-A3-N3-T3-E3-H3) PE=3 SV=1
Length = 1088
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 165 LPRH-LMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKL--WAYE 221
+PRH + + EV+ D + L + +M +F H+ ++A +L +Y
Sbjct: 182 VPRHNAKYRYEYEVMKDKPYYLVTWANSSIEM------LMSVFSHEDYLIAKELIILSYS 235
Query: 222 NLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQV 281
N ++T+ KLVS S+L+ VD + + EL F N ++ +P + +D++
Sbjct: 236 N----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVPDQ---TFDEL 288
Query: 282 SETLDFLYKIG 292
E LD + K G
Sbjct: 289 KEILDNMKKAG 299
>sp|P21615|RDRP_ROTBU RNA-directed RNA polymerase OS=Rotavirus A (strain Cow/United
Kingdom/UK/1975 G6-P7[5]-I2-R2-C2-M2-A3-N2-T7-E2-H3)
PE=2 SV=1
Length = 1088
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 165 LPRH-LMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKL--WAYE 221
+PRH + + EV+ D + L + +M +F H+ ++A +L +Y
Sbjct: 182 VPRHNAKYRYEYEVMKDKPYYLVTWANSSIEM------LMSVFSHEDYLIARELIVLSYS 235
Query: 222 NLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQV 281
N ++T+ KLVS S+L+ VD + + EL F N ++ +P + +D++
Sbjct: 236 N----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVPDQ---TFDEL 288
Query: 282 SETLDFLYKIGYNEV 296
+ LD + K G ++
Sbjct: 289 KQMLDNMRKAGLTDI 303
>sp|A7J398|RDRP_ROTBN RNA-directed RNA polymerase OS=Rotavirus A (strain Cow/United
States/NCDV-Lincoln/1969
G6-P6[1]-I2-R2-C2-M2-Ax-N2-T6-E2-Hx) PE=3 SV=1
Length = 1088
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 165 LPRH-LMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKL--WAYE 221
+PRH + + EV+ D + L + +M +F H+ ++A +L +Y
Sbjct: 182 VPRHNAKYRYEYEVMKDKPYYLVTWANSSIEM------LMSVFSHEDYLIARELIVLSYS 235
Query: 222 NLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQV 281
N ++T+ KLVS S+L+ VD + + EL F N ++ +P + +D++
Sbjct: 236 N----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVPDQ---TFDEL 288
Query: 282 SETLDFLYKIGYNEV 296
+ LD + K G ++
Sbjct: 289 KQMLDNMRKAGLTDI 303
>sp|P17468|RDRP_ROTRF RNA-directed RNA polymerase OS=Rotavirus A (strain
Cow/France/RF/1975 G6-P6[1]-I2-R2-C2-M2-A3-N2-T6-E2-H3)
PE=1 SV=1
Length = 1088
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 165 LPRH-LMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKL--WAYE 221
+PRH + + EV+ D + L + +M +F H+ ++A +L +Y
Sbjct: 182 VPRHNAKYRYEYEVMKDKPYYLVTWANSSIEM------LMSVFSHEDYLIARELIVLSYS 235
Query: 222 NLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQV 281
N ++T+ KLVS S+L+ VD + + EL F N ++ +P + +D++
Sbjct: 236 N----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVPDQ---TFDEL 288
Query: 282 SETLDFLYKIGYNEV 296
+ LD + K G ++
Sbjct: 289 KQMLDNMRKAGLTDI 303
>sp|Q91571|EPB1A_XENLA Ephrin type-B receptor 1-A OS=Xenopus laevis GN=ephb1-a PE=1 SV=1
Length = 985
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 16/190 (8%)
Query: 245 VDSRFVKVLEKLKELGFKNDWIGRY-LPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFK 303
+D FVK+ E + F + GR LP K ++S + L K GY+E Q + F
Sbjct: 615 IDVSFVKIEEVIGAGEFGEVYKGRLKLPSK-----REISVAIKTL-KAGYSEKQRRD-FL 667
Query: 304 TNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKN-----LLQAVG 358
+ +++ + + L G + K M + + F +N L S +N ++Q VG
Sbjct: 668 SEASIMGQFDHPNIIRLEGVVTKSRPVM--IITEFMEN-GALDSFLRQNDGQFTVIQLVG 724
Query: 359 FLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLA 418
L I GMK +S M +H +L L VC G Q DP L
Sbjct: 725 MLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLG 784
Query: 419 SKTEVKIDEQ 428
K V+ Q
Sbjct: 785 GKIPVRWTAQ 794
>sp|Q8CBF3|EPHB1_MOUSE Ephrin type-B receptor 1 OS=Mus musculus GN=Ephb1 PE=1 SV=1
Length = 984
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 245 VDSRFVKVLEKLKELGFKNDWIGRY-LPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFK 303
+D FVK+ E + F + GR LPGK ++ + L K GY+E Q + F
Sbjct: 614 IDVSFVKIEEVIGAGEFGEVYKGRLKLPGK-----REIYVAIKTL-KAGYSEKQRRD-FL 666
Query: 304 TNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKN-----LLQAVG 358
+ +++ + + L G + K M + + F +N L S +N ++Q VG
Sbjct: 667 SEASIMGQFDHPNIIRLEGVVTKSRPVM--IITEFMEN-GALDSFLRQNDGQFTVIQLVG 723
Query: 359 FLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLA 418
L I GMK +S M +H +L L VC G Q DP L
Sbjct: 724 MLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLG 783
Query: 419 SKTEVK 424
K V+
Sbjct: 784 GKIPVR 789
>sp|P09759|EPHB1_RAT Ephrin type-B receptor 1 OS=Rattus norvegicus GN=Ephb1 PE=1 SV=2
Length = 984
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 245 VDSRFVKVLEKLKELGFKNDWIGRY-LPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFK 303
+D FVK+ E + F + GR LPGK ++ + L K GY+E Q + F
Sbjct: 614 IDVSFVKIEEVIGAGEFGEVYKGRLKLPGK-----REIYVAIKTL-KAGYSEKQRRD-FL 666
Query: 304 TNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKN-----LLQAVG 358
+ +++ + + L G + K M + + F +N L S +N ++Q VG
Sbjct: 667 SEASIMGQFDHPNIIRLEGVVTKSRPVM--IITEFMEN-GALDSFLRQNDGQFTVIQLVG 723
Query: 359 FLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLA 418
L I GMK +S M +H +L L VC G Q DP L
Sbjct: 724 MLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLG 783
Query: 419 SKTEVK 424
K V+
Sbjct: 784 GKIPVR 789
>sp|P29321|EPHA8_RAT Ephrin type-A receptor 8 (Fragment) OS=Rattus norvegicus GN=Epha8
PE=2 SV=1
Length = 372
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
+LQ VG L +G GM+ +S++ +H +L L + VC KV L + ++DDP
Sbjct: 100 TILQLVGMLKGVGAGMRYLSDLGYIHRDLAARNILVDGRLVC---KVSDFGLSRALEDDP 156
Query: 412 LKLFHLAS 419
+ A
Sbjct: 157 EAAYTTAG 164
>sp|B2BMF7|RDRP_ROTW3 RNA-directed RNA polymerase OS=Rotavirus A (strain Cow/United
States/WC3/1981 G6-P7[5]-I2-R2-C2-M2-A3-N2-T6-E2-H3)
PE=3 SV=1
Length = 1088
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F H+ ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 217 VFSHEDYLIARELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 272
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEV 296
N ++ +P + +D++ + LD + K G ++
Sbjct: 273 NKYVRAIVPDQ---TFDELKQMLDNMRKAGLTDI 303
>sp|P54759|EPHA7_RAT Ephrin type-A receptor 7 OS=Rattus norvegicus GN=Epha7 PE=1 SV=1
Length = 998
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GM+ +++M +H +L L VC KV L ++I+DDP
Sbjct: 731 TVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVC---KVSDFGLSRVIEDDP 787
Query: 412 LKLF 415
++
Sbjct: 788 EAVY 791
>sp|Q15375|EPHA7_HUMAN Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3
Length = 998
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GM+ +++M +H +L L VC KV L ++I+DDP
Sbjct: 731 TVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVC---KVSDFGLSRVIEDDP 787
Query: 412 LKLF 415
++
Sbjct: 788 EAVY 791
>sp|O42422|EPHA7_CHICK Ephrin type-A receptor 7 OS=Gallus gallus GN=EPHA7 PE=2 SV=1
Length = 993
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GM+ +++M +H +L L VC KV L ++I+DDP
Sbjct: 726 TVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVC---KVSDFGLSRVIEDDP 782
Query: 412 LKLF 415
++
Sbjct: 783 EAVY 786
>sp|Q61772|EPHA7_MOUSE Ephrin type-A receptor 7 OS=Mus musculus GN=Epha7 PE=1 SV=2
Length = 998
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GM+ +++M +H +L L VC KV L ++I+DDP
Sbjct: 731 TVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVC---KVSDFGLSRVIEDDP 787
Query: 412 LKLF 415
++
Sbjct: 788 EAVY 791
>sp|Q91736|EPB1B_XENLA Ephrin type-B receptor 1-B (Fragment) OS=Xenopus laevis GN=ephb1-b
PE=1 SV=1
Length = 902
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 245 VDSRFVKVLEKLKELGFKNDWIGRY-LPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFK 303
+D FVK+ E + F + GR LP K ++S + L K GY+E Q + F
Sbjct: 532 IDVSFVKIEEVIGAGEFGEVYKGRLKLPSK-----REISVAIKTL-KAGYSEKQRRD-FL 584
Query: 304 TNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKN-----LLQAVG 358
+ +++ + + L G + K M + + F +N L S +N ++Q VG
Sbjct: 585 SEASIMGQFDHPNIIRLEGVVTKSRPVM--IITEFMEN-GALDSFLRQNDGQFTVIQLVG 641
Query: 359 FLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLA 418
L I GMK +S M +H +L L VC G Q DP L
Sbjct: 642 MLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLG 701
Query: 419 SKTEVK 424
K V+
Sbjct: 702 GKIPVR 707
>sp|P29318|EPHA3_CHICK Ephrin type-A receptor 3 OS=Gallus gallus GN=EPHA3 PE=1 SV=1
Length = 983
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 353 LLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 720 VIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 775
>sp|P29322|EPHA8_HUMAN Ephrin type-A receptor 8 OS=Homo sapiens GN=EPHA8 PE=1 SV=2
Length = 1005
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L +G GM+ +S++ +H +L L VC KV L ++++DDP
Sbjct: 733 TIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVC---KVSDFGLSRVLEDDP 789
>sp|P54758|EPHA6_RAT Ephrin type-A receptor 6 OS=Rattus norvegicus GN=Epha6 PE=2 SV=2
Length = 1035
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 770 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVC---KVSDFGLSRVLEDDP 826
>sp|Q62413|EPHA6_MOUSE Ephrin type-A receptor 6 OS=Mus musculus GN=Epha6 PE=2 SV=2
Length = 1035
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 770 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVC---KVSDFGLSRVLEDDP 826
>sp|P29320|EPHA3_HUMAN Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 PE=1 SV=2
Length = 983
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 353 LLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 720 VIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 775
>sp|Q87L54|CAPP_VIBPA Phosphoenolpyruvate carboxylase OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=ppc PE=3 SV=2
Length = 877
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 488 RNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAF--PAYLCYDMGRINHRCKMYV 545
R I+K+ +LN++KD+L+ KI K + PL+ V P Y CY + H C M V
Sbjct: 312 RAILKQLRALLNETKDILDAKIHGQKLAVKAPLQKVEQLWDPLYACY---QSLHECGMGV 368
>sp|Q9UF33|EPHA6_HUMAN Ephrin type-A receptor 6 OS=Homo sapiens GN=EPHA6 PE=2 SV=2
Length = 1035
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 770 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVC---KVSDFGLSRVLEDDP 826
>sp|O08680|EPHA3_RAT Ephrin type-A receptor 3 OS=Rattus norvegicus GN=Epha3 PE=2 SV=1
Length = 984
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 353 LLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 721 VIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 776
>sp|Q60629|EPHA5_MOUSE Ephrin type-A receptor 5 OS=Mus musculus GN=Epha5 PE=1 SV=2
Length = 876
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 612 TVIQLVGMLRGIAAGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 668
>sp|P29319|EPHA3_MOUSE Ephrin type-A receptor 3 OS=Mus musculus GN=Epha3 PE=1 SV=1
Length = 983
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 353 LLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 720 VIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 775
>sp|O09127|EPHA8_MOUSE Ephrin type-A receptor 8 OS=Mus musculus GN=Epha8 PE=1 SV=2
Length = 1004
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L +G GM+ +S++ +H +L L + VC KV L + ++DDP
Sbjct: 732 TIVQLVGMLRGVGAGMRYLSDLGYIHRDLAARNVLVDGRLVC---KVSDFGLSRALEDDP 788
Query: 412 LKLFHLAS 419
+ A
Sbjct: 789 EAAYTTAG 796
>sp|B3F2X5|RDRP_ROTTU RNA-directed RNA polymerase OS=Rotavirus A (isolate Monkey/United
States/TUCH/2003 G3-Px[24]-I9-R3-C3-M3-A9-Nx-Tx-Ex-Hx)
PE=3 SV=1
Length = 1088
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 165 LPRH-LMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKL--WAYE 221
+PRH + + EV+ D + L + +M +F H+ ++A +L +Y
Sbjct: 182 VPRHNAKYRYEYEVMKDKPYYLVTWANSSIEM------LMSVFSHEDYLIAKELIVLSYS 235
Query: 222 NLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQV 281
N ++T+ KLVS S+L+ VD + + EL F N ++ +P + ++++
Sbjct: 236 N----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVKAIVPDQ---TFEEL 288
Query: 282 SETLDFLYKIG 292
E LD + K G
Sbjct: 289 KEMLDNMKKAG 299
>sp|A7J3A6|RDRP_ROTHD RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
States/DS-1/1976 G2-P1B[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2)
PE=3 SV=1
Length = 1088
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F H+ ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 217 VFSHEDYLIAKELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 272
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
N ++ +P + +D++ + LD + K G
Sbjct: 273 NKYVRAIVPDQ---TFDELKQMLDNMRKAG 299
>sp|A7J390|RDRP_ROTHS RNA-directed RNA polymerase OS=Rotavirus A (strain
Human/Japan/S2/1980
G2-P1B[4]-I2-R2-C2-M2-Ax-Nx-T2-E2-Hx) PE=3 SV=1
Length = 1088
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F H+ ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 217 VFSHEDYLIAKELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 272
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
N ++ +P + +D++ + LD + K G
Sbjct: 273 NKYVRAIVPDQ---TFDELKQMLDNMRKAG 299
>sp|Q07494|EPHB1_CHICK Ephrin type-B receptor 1 (Fragment) OS=Gallus gallus GN=EPHB1 PE=2
SV=2
Length = 984
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 245 VDSRFVKVLEKLKELGFKNDWIGRY-LPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFK 303
+D FVK+ E + F + GR LPGK ++ + L K GY+E Q + F
Sbjct: 614 IDVSFVKIEEVIGAGEFGEVYKGRLKLPGK-----REIYVAIKTL-KAGYSEKQRRD-FL 666
Query: 304 TNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKN-----LLQAVG 358
+ +++ + + L G + K M + + F +N L S +N ++Q VG
Sbjct: 667 SEASIMGQFDHPNIIRLEGVVTKSRPVM--IITEFMEN-GALDSFLRQNDGQFTVIQLVG 723
Query: 359 FLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLA 418
L I GMK ++ M +H +L L VC G Q DP L
Sbjct: 724 MLRGIAAGMKYLAEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLG 783
Query: 419 SKTEVK 424
K V+
Sbjct: 784 GKIPVR 789
>sp|P54762|EPHB1_HUMAN Ephrin type-B receptor 1 OS=Homo sapiens GN=EPHB1 PE=1 SV=1
Length = 984
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 245 VDSRFVKVLEKLKELGFKNDWIGRY-LPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFK 303
+D FVK+ E + F + GR LPGK ++ + L K GY+E Q + F
Sbjct: 614 IDVSFVKIEEVIGAGEFGEVYKGRLKLPGK-----REIYVAIKTL-KAGYSEKQRRD-FL 666
Query: 304 TNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKN-----LLQAVG 358
+ +++ + + L G + K M + + F +N L S +N ++Q VG
Sbjct: 667 SEASIMGQFDHPNIIRLEGVVTKSRPVM--IITEFMEN-GALDSFLRQNDGQFTVIQLVG 723
Query: 359 FLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLA 418
L I GMK ++ M +H +L L VC G Q DP L
Sbjct: 724 MLRGIAAGMKYLAEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLG 783
Query: 419 SKTEVK 424
K V+
Sbjct: 784 GKIPVR 789
>sp|P54757|EPHA5_RAT Ephrin type-A receptor 5 OS=Rattus norvegicus GN=Epha5 PE=1 SV=1
Length = 1005
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 775 TVIQLVGMLRGIAAGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 831
>sp|P54755|EPHA5_CHICK Ephrin type-A receptor 5 OS=Gallus gallus GN=EPHA5 PE=2 SV=1
Length = 1013
Score = 33.5 bits (75), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 352 NLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP 411
++Q VG L I GMK +S+M +H +L L VC KV L ++++DDP
Sbjct: 749 TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC---KVSDFGLSRVLEDDP 805
>sp|B1NKQ9|RDRP_ROTH7 RNA-directed RNA polymerase OS=Rotavirus A (isolate Human/United
Kingdom/A64/1987 G10-P11[14]-I2-R2-C2-M1-A3-N2-T6-E2-H3)
PE=3 SV=1
Length = 1088
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 205 IFRHDRGVLASKL--WAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFK 262
+F H+ ++A +L +Y N ++T+ KLVS S+L+ VD + + EL F
Sbjct: 217 VFSHEDYLIARELIVLSYSN----RSTLAKLVSSPMSILVALVDINGTFITNEELELEFS 272
Query: 263 NDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
N ++ +P + +D++ + LD + K G
Sbjct: 273 NKYVRAIVPDQ---TFDELKQMLDNMRKAG 299
>sp|Q96724|POLS_DXV96 Structural polyprotein OS=Drosophila x virus (isolate Chung/1996)
PE=3 SV=1
Length = 1032
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 89/230 (38%), Gaps = 41/230 (17%)
Query: 306 PALVFEGS--GQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEI 363
P F GS G V +FG LKL L + L +P ++ K + +L + +
Sbjct: 648 PFAAFTGSVVGSSVGEVFGINLKLQLTDSLGIPLLGNSPGLVQVKTLTSLDKKI------ 701
Query: 364 GMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEV 423
KD MG + PK G S+ + +P
Sbjct: 702 ----KD-----------MGDVKRRTPKQTLPHWTAGSASMNPFMNTNPFL---------E 737
Query: 424 KIDEQV--DCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAG 481
++D+ + + P + + FL + +S+E + ++ +L+E L+ G
Sbjct: 738 ELDQPIPSNAAKPISEETRDLFLSDGQTIPSSQEKIATIHEYLLEHKELEEAMFSLISQG 797
Query: 482 LDSNVVRNIVKRAPMVLNQSKDV-------LEKKIDYLKNYLCYPLESVV 524
+++ +VK A + QS++V LE+K+ L+N Y ES +
Sbjct: 798 RGRSLINMVVKSALNIETQSREVTGERRQRLERKLRNLENQGIYVDESKI 847
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,029,205
Number of Sequences: 539616
Number of extensions: 8538559
Number of successful extensions: 21644
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 21625
Number of HSP's gapped (non-prelim): 73
length of query: 595
length of database: 191,569,459
effective HSP length: 123
effective length of query: 472
effective length of database: 125,196,691
effective search space: 59092838152
effective search space used: 59092838152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)