Query 007621
Match_columns 595
No_of_seqs 346 out of 1223
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:21:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 4.2E-46 1.4E-50 392.5 25.9 306 179-576 20-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 7.2E-44 2.5E-48 363.5 16.8 255 282-586 6-267 (270)
3 3mva_O Transcription terminati 100.0 6.1E-35 2.1E-39 307.4 22.5 250 177-542 85-340 (343)
4 4fp9_B Mterf domain-containing 100.0 4.2E-34 1.4E-38 297.4 20.2 218 280-588 45-273 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 1.5E-29 5.2E-34 257.6 18.3 214 214-514 6-224 (270)
6 4fp9_B Mterf domain-containing 99.9 3.5E-23 1.2E-27 215.2 12.4 174 150-366 52-228 (335)
7 4fzv_B Mterf domain-containing 99.3 5.4E-11 1.9E-15 105.8 13.1 184 321-588 37-228 (239)
8 4fzv_B Mterf domain-containing 98.2 1.4E-05 4.8E-10 71.2 11.3 150 177-365 32-182 (239)
9 3ugm_A TAL effector avrbs3/PTH 95.2 0.14 4.9E-06 56.3 12.5 230 92-340 245-503 (1047)
10 3ugm_A TAL effector avrbs3/PTH 93.2 0.21 7.3E-06 55.0 8.6 143 147-304 414-571 (1047)
11 3v6t_A DHAX3; tandem repeats, 86.3 3.6 0.00012 42.6 10.3 296 92-408 125-451 (499)
12 3ff5_A PEX14P, peroxisomal bio 82.1 1.2 4.1E-05 32.9 3.5 34 339-376 20-53 (54)
13 4hpz_A Dtale2; DNA binding pro 80.6 8.1 0.00028 39.6 10.1 238 90-374 164-423 (463)
14 4hpz_A Dtale2; DNA binding pro 80.5 3.6 0.00012 42.2 7.5 206 91-340 199-425 (463)
15 3ff5_A PEX14P, peroxisomal bio 78.0 5 0.00017 29.6 5.6 26 469-494 29-54 (54)
16 1oqy_A HHR23A, UV excision rep 75.6 1.5 5.1E-05 45.6 3.2 115 279-415 166-286 (368)
17 4ae4_A Ubiquitin-associated pr 75.6 18 0.00061 31.1 9.6 98 180-326 10-113 (118)
18 4ae4_A Ubiquitin-associated pr 74.7 39 0.0013 28.9 11.5 90 216-341 11-100 (118)
19 2w84_A Peroxisomal membrane pr 73.0 2.4 8.4E-05 32.9 3.0 35 339-377 25-59 (70)
20 3v6t_A DHAX3; tandem repeats, 72.6 13 0.00045 38.5 9.1 268 86-374 150-450 (499)
21 2w84_A Peroxisomal membrane pr 62.5 15 0.00052 28.4 5.5 39 456-494 18-59 (70)
22 2knz_A Ubiquilin-4; cytoplasm, 58.7 7.3 0.00025 28.4 3.1 13 437-449 11-23 (53)
23 1oqy_A HHR23A, UV excision rep 56.7 4.2 0.00014 42.2 2.0 42 249-295 168-209 (368)
24 4e9m_A Nucleotide-binding olig 56.3 5.1 0.00017 35.5 2.1 77 90-166 44-125 (144)
25 1ify_A HHR23A, UV excision rep 54.5 16 0.00055 26.1 4.3 39 469-514 7-45 (49)
26 2knz_A Ubiquilin-4; cytoplasm, 52.9 29 0.00099 25.2 5.5 39 282-328 12-51 (53)
27 3idw_A Actin cytoskeleton-regu 49.9 18 0.0006 28.2 4.0 51 321-375 6-59 (72)
28 2cos_A Serine/threonine protei 48.0 24 0.00081 25.9 4.1 11 441-451 13-23 (54)
29 1ich_A TNF-1, tumor necrosis f 46.5 26 0.0009 29.8 5.0 46 276-331 26-72 (112)
30 2cos_A Serine/threonine protei 46.4 11 0.00036 27.7 2.1 40 474-520 13-52 (54)
31 2lbc_A Ubiquitin carboxyl-term 45.6 1.1E+02 0.0037 26.1 9.1 41 278-326 75-115 (126)
32 2jy5_A Ubiquilin-1; UBA, alter 45.2 15 0.00052 26.6 2.9 14 436-449 11-24 (52)
33 1ify_A HHR23A, UV excision rep 45.0 28 0.00097 24.7 4.3 37 282-326 9-45 (49)
34 1veg_A NEDD8 ultimate buster-1 43.0 37 0.0013 27.2 5.1 39 472-517 31-69 (83)
35 2oo9_A E3 ubiquitin-protein li 42.1 28 0.00095 24.6 3.6 24 469-492 3-26 (46)
36 2ekk_A UBA domain from E3 ubiq 41.7 27 0.00093 24.5 3.7 20 474-493 13-32 (47)
37 2g3q_A Protein YBL047C; endocy 41.0 40 0.0014 23.0 4.4 35 283-325 6-40 (43)
38 2g3q_A Protein YBL047C; endocy 39.6 19 0.00067 24.7 2.6 22 472-493 6-27 (43)
39 3dfg_A Xcrecx, regulatory prot 39.4 1.1E+02 0.0036 27.4 8.4 22 284-305 87-108 (162)
40 1vg5_A RSGI RUH-014, rhomboid 38.6 39 0.0013 26.4 4.5 38 281-326 29-66 (73)
41 2jy5_A Ubiquilin-1; UBA, alter 38.2 41 0.0014 24.2 4.3 35 283-325 14-49 (52)
42 1z96_A DNA-damage, UBA-domain 36.9 38 0.0013 22.4 3.8 20 473-492 7-26 (40)
43 2ooa_A E3 ubiquitin-protein li 36.4 30 0.001 25.1 3.2 22 471-492 12-33 (52)
44 1wji_A Tudor domain containing 36.4 55 0.0019 24.6 4.9 37 283-327 11-47 (63)
45 1uxc_A FRUR (1-57), fructose r 36.3 33 0.0011 25.9 3.7 49 221-270 8-56 (65)
46 2dak_A Ubiquitin carboxyl-term 36.0 53 0.0018 24.6 4.8 38 472-516 11-48 (63)
47 2ooa_A E3 ubiquitin-protein li 34.9 76 0.0026 23.0 5.1 25 280-304 10-34 (52)
48 2d9s_A CBL E3 ubiquitin protei 34.6 42 0.0015 24.4 3.7 22 471-492 10-31 (53)
49 2cp8_A NEXT to BRCA1 gene 1 pr 33.5 65 0.0022 23.6 4.7 42 434-479 6-47 (54)
50 2juj_A E3 ubiquitin-protein li 33.4 48 0.0016 24.3 3.8 25 468-492 5-29 (56)
51 3idw_A Actin cytoskeleton-regu 32.8 27 0.00093 27.1 2.6 50 181-234 5-58 (72)
52 2dah_A Ubiquilin-3; UBA domain 31.8 41 0.0014 24.5 3.4 16 436-451 8-23 (54)
53 1veg_A NEDD8 ultimate buster-1 30.4 71 0.0024 25.6 4.9 38 282-327 30-67 (83)
54 1wji_A Tudor domain containing 30.1 41 0.0014 25.3 3.3 37 472-515 11-47 (63)
55 1vg5_A RSGI RUH-014, rhomboid 30.0 32 0.0011 26.9 2.7 38 470-514 29-66 (73)
56 1wiv_A UBP14, ubiquitin-specif 28.3 80 0.0027 24.5 4.8 37 283-327 31-67 (73)
57 1wiv_A UBP14, ubiquitin-specif 27.6 56 0.0019 25.4 3.7 38 471-515 30-67 (73)
58 2dag_A Ubiquitin carboxyl-term 27.3 86 0.0029 24.3 4.8 37 474-516 13-49 (74)
59 2cpw_A CBL-interacting protein 26.8 64 0.0022 24.3 3.8 18 475-492 24-41 (64)
60 1wgn_A UBAP1, ubiquitin associ 26.4 59 0.002 24.5 3.4 36 283-326 21-56 (63)
61 2dak_A Ubiquitin carboxyl-term 25.9 74 0.0025 23.8 4.1 36 283-326 11-46 (63)
62 1wj7_A Hypothetical protein (R 25.9 1.2E+02 0.0043 25.2 5.7 43 465-514 34-77 (104)
63 2of5_A Death domain-containing 25.4 1.6E+02 0.0054 24.8 6.6 42 276-327 36-77 (114)
64 3e3v_A Regulatory protein RECX 25.2 1.5E+02 0.0053 26.8 7.0 74 284-376 89-162 (177)
65 2o71_A Death domain-containing 24.8 1.7E+02 0.0059 24.6 6.7 41 277-327 37-77 (115)
66 2bwb_A Ubiquitin-like protein 24.7 54 0.0019 23.0 2.9 14 437-450 7-20 (46)
67 3oq9_A Tumor necrosis factor r 24.2 2.1E+02 0.0071 22.9 6.7 42 285-330 16-58 (86)
68 2l8n_A Transcriptional repress 24.1 57 0.0019 24.7 3.1 44 221-268 17-60 (67)
69 2dai_A Ubadc1, ubiquitin assoc 23.8 1.1E+02 0.0038 24.3 5.0 37 473-516 32-68 (83)
70 1vej_A Riken cDNA 4931431F19; 23.7 73 0.0025 24.9 3.7 16 435-450 27-42 (74)
71 1wgn_A UBAP1, ubiquitin associ 23.7 31 0.0011 26.0 1.5 41 469-516 18-58 (63)
72 2ef8_A C.ECOT38IS, putative tr 23.6 1.4E+02 0.0046 22.5 5.5 56 470-525 11-75 (84)
73 2dai_A Ubadc1, ubiquitin assoc 22.5 62 0.0021 25.8 3.2 38 437-479 29-66 (83)
74 3ezq_A Tumor necrosis factor r 22.4 2.4E+02 0.0082 23.9 7.0 39 286-328 25-64 (115)
75 3d5l_A Regulatory protein RECX 21.9 4.9E+02 0.017 24.2 10.5 108 249-376 95-205 (221)
76 2dna_A Unnamed protein product 21.3 93 0.0032 23.8 3.8 39 437-479 19-57 (67)
77 3e3v_A Regulatory protein RECX 21.3 3.6E+02 0.012 24.2 8.7 56 178-236 52-109 (177)
78 2d9s_A CBL E3 ubiquitin protei 21.1 94 0.0032 22.6 3.5 40 280-327 8-47 (53)
79 1wr1_B Ubiquitin-like protein 20.8 2E+02 0.0067 21.2 5.4 14 437-450 17-30 (58)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=4.2e-46 Score=392.49 Aligned_cols=306 Identities=17% Similarity=0.231 Sum_probs=268.5
Q ss_pred hhHHHHHhhcCCCcchHHHHHHhcccccccCchhhHHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHH
Q 007621 179 LDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKE 258 (595)
Q Consensus 179 ~p~~~~L~~~g~s~~~i~~~~k~~p~ll~~~~~~l~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~ 258 (595)
...+++|.++|++.++ +.+.+|+++..+.+..++.++||+++|++.++|++++.++|.+|..+++ ++.|++++|
T Consensus 20 ~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL-- 93 (343)
T 3mva_O 20 EDLLKNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLW-- 93 (343)
T ss_dssp CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHH--
T ss_pred HHHHHHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHH--
Confidence 3468999999999655 5677899998887788999999999999999999999999999999966 477766544
Q ss_pred cCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCch-hhHHHHHHHHHHcCCChhHHHHH
Q 007621 259 LGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSG-QKVYVLFGRLLKLGLKMNEVYSL 337 (595)
Q Consensus 259 lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e-~~l~~~v~fL~~lGl~~~~i~~~ 337 (595)
+++|+++++|.+++.++|++|..+.+ +++.|+++||+++|++.++++++
T Consensus 94 ------------------------------~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~l 143 (343)
T 3mva_O 94 ------------------------------RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRL 143 (343)
T ss_dssp ------------------------------TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ------------------------------HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHH
Confidence 55999999999999999995444555 49999999999999999999999
Q ss_pred HhhCCceeeccccccHHHHHHHHHHhCCC------hhhHHHHHHhcCcccccc--cccchHHHHHh-cCCChhHHHHHHH
Q 007621 338 FSQNPQILSSKFVKNLLQAVGFLIEIGMG------MKDISNMVLMHAELMGSC--SLKGPKTVCSK-LKVGRESLCQIIK 408 (595)
Q Consensus 338 I~~~P~lL~~sle~~l~p~~~fL~~~Gl~------~~~I~~il~~~P~lL~~s--~lk~~i~~L~~-lGv~~~~l~~lI~ 408 (595)
+.++|++|++++|++ +|++++|+++|++ .+.|.+++.++|++++++ .++++++||++ +|++.+++..++.
T Consensus 144 l~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~ 222 (343)
T 3mva_O 144 LTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLIC 222 (343)
T ss_dssp HHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 999999999999876 9999999988764 778999999999999997 58999999995 9999999999998
Q ss_pred hCCcccccccccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH----HhCCCH
Q 007621 409 DDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV----QAGLDS 484 (595)
Q Consensus 409 ~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~----~~G~s~ 484 (595)
..|..+.. .. .+.|+++++++. ++||+.
T Consensus 223 ~~~~~~l~---------------~s---------------------------------~~~l~~~~~~l~e~~~~lG~s~ 254 (343)
T 3mva_O 223 GPGAEILD---------------LS---------------------------------NDYARRSYANIKEKLFSLGCTE 254 (343)
T ss_dssp TTTGGGGG---------------CC---------------------------------TTHHHHHHHHHHHHHHTTTCCH
T ss_pred cCChHHhh---------------cc---------------------------------HHHHHHHHHHHHHHHHHcCCCH
Confidence 87654420 11 134566665554 799999
Q ss_pred HHHHHHHHhCCcccccChHHHHHHHHHHHHHhCCChHHHhhcCcccccccccccchHHHHHHHHHcCCCCCCCCcc--cc
Q 007621 485 NVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLS--TI 562 (595)
Q Consensus 485 ~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sleri~pR~~~~~~L~~kgl~~~~~~l~--~i 562 (595)
+||..||.++|+||++|+++|++|++||++ ||++.++|+++|++|+||+|||+||| ++|+++|+ +++++ ++
T Consensus 255 ~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sleri~~R~---~~L~~~g~---~~~~~~~~~ 327 (343)
T 3mva_O 255 EEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSISTLKSRI---KELVNAGC---NLSTLNITL 327 (343)
T ss_dssp HHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHHHHHHHH---HHHHTTTC---CSSSSCGGG
T ss_pred HHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHHHHHHHH---HHHHHCCC---CCCCCcchh
Confidence 999999999999999999999999999999 99999999999999999999999999 57999998 55666 99
Q ss_pred cccChHHHHHHHhh
Q 007621 563 LACSDAKFEKYFVD 576 (595)
Q Consensus 563 l~~sek~F~~~~v~ 576 (595)
+++||++|.++|.+
T Consensus 328 l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 328 LSWSKKRYEAKLKK 341 (343)
T ss_dssp GGSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHhc
Confidence 99999999999965
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=7.2e-44 Score=363.47 Aligned_cols=255 Identities=17% Similarity=0.255 Sum_probs=235.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHHH
Q 007621 282 SETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLI 361 (595)
Q Consensus 282 ~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~ 361 (595)
.+++++|.++|++..+|.+....+|.+|.+++++++.++++||.++|++.++++++|.++|.+|++++|+ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 4688899999999999987777777779999999999999999999999999999999999999999998 999999999
Q ss_pred HhCCChhhHHHHHHhcCcccccc--cccchHHHH-HhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchH
Q 007621 362 EIGMGMKDISNMVLMHAELMGSC--SLKGPKTVC-SKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDV 438 (595)
Q Consensus 362 ~~Gl~~~~I~~il~~~P~lL~~s--~lk~~i~~L-~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~ 438 (595)
++|++.++|.+++.++|++|+++ .+++++++| .++|++.+++.+++.++|+++. . +
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~-------------~---s----- 143 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT-------------G---S----- 143 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT-------------S---C-----
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCccee-------------e---c-----
Confidence 99999999999999999999987 589999999 5799999999999999999995 1 1
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH-HhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHhC
Q 007621 439 EKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV-QAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLC 517 (595)
Q Consensus 439 ~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~-~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg 517 (595)
.++++++++++. ++||+.+||..|+.++|++|++|+++|++|++||+++||
T Consensus 144 ----------------------------~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg 195 (270)
T 3m66_A 144 ----------------------------LEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMS 195 (270)
T ss_dssp ----------------------------SHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSC
T ss_pred ----------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhC
Confidence 135678889765 999999999999999999999999999999999999999
Q ss_pred CChHHHhhcCcccccccccccchHHHHHHHHHcCCCCCC---CCcccccccChHHHHHHHhhhCCChHHHHH
Q 007621 518 YPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPT---LSLSTILACSDAKFEKYFVDVHPEGPAMWE 586 (595)
Q Consensus 518 ~~~~~l~~~P~~L~~sleri~pR~~~~~~L~~kgl~~~~---~~l~~il~~sek~F~~~~v~~~~~~~~~~~ 586 (595)
++.++|+++|++|+||+|||+|||+++++|.++|+.+++ ++|++++.+||++|+++|++.+++..+.|.
T Consensus 196 ~~~~~i~~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f~ 267 (270)
T 3m66_A 196 IPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFL 267 (270)
T ss_dssp CCHHHHHHCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHHH
T ss_pred CCHHHHHhCchHhhCCHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999997654 678889999999999999999977666654
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=6.1e-35 Score=307.35 Aligned_cols=250 Identities=18% Similarity=0.264 Sum_probs=138.7
Q ss_pred hhhhHHHHHhhcCCCcchHHHHHHhccc-ccccCc-hhhHHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHH
Q 007621 177 VLLDNFHVLCDYGIPRSKMGKMYVEATE-IFRHDR-GVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLE 254 (595)
Q Consensus 177 ~l~p~~~~L~~~g~s~~~i~~~~k~~p~-ll~~~~-~~l~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~ 254 (595)
++.|.++||.++|++++++++++.++|+ ++.+++ +.++|++++|+++|++.++|++++.++|++++.++++ .++.++
T Consensus 85 ~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~ 163 (343)
T 3mva_O 85 NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVE 163 (343)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHH
Confidence 3444555555555555555555555555 233332 2455555555555555555555555555555555443 244444
Q ss_pred HHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCC--HHHHHHHHHhCCCccccCchhhHHHHHHHHHH-cCCCh
Q 007621 255 KLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYN--EVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK-LGLKM 331 (595)
Q Consensus 255 ~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s--~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~-lGl~~ 331 (595)
+|+++|+ ++|++ ++.|.+++.++|.++..+ +++++++++||++ +|++.
T Consensus 164 ~L~~lgv----------------------------~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~ 214 (343)
T 3mva_O 164 FLQAAGL----------------------------SLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNS 214 (343)
T ss_dssp HHHHHHH----------------------------HTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCH
T ss_pred HHHHhCC----------------------------CcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCH
Confidence 4444222 14443 444555555555555433 4455555555553 45555
Q ss_pred hHHHHHHhhCC-ceeeccccccHHHHHHHHHHhCCChhhHHHHHHhcCcccccccccchHHHHHhcCCChhHHHHHHHhC
Q 007621 332 NEVYSLFSQNP-QILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDD 410 (595)
Q Consensus 332 ~~i~~~I~~~P-~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~~P~lL~~s~lk~~i~~L~~lGv~~~~l~~lI~~~ 410 (595)
+++.+++.+.| .+++++. +.+++++.++.+ +++++|++.++++.++.++
T Consensus 215 ~~~~~~i~~~~~~~l~~s~-~~l~~~~~~l~e-----------------------------~~~~lG~s~~ev~~~v~~~ 264 (343)
T 3mva_O 215 EELLVLICGPGAEILDLSN-DYARRSYANIKE-----------------------------KLFSLGCTEEEVQKFVLSY 264 (343)
T ss_dssp HHHHHHHHTTTGGGGGCCT-THHHHHHHHHHH-----------------------------HHHTTTCCHHHHHHHHHTC
T ss_pred HHHHHHHhcCChHHhhccH-HHHHHHHHHHHH-----------------------------HHHHcCCCHHHHHHHHHhC
Confidence 45444444432 4444443 234444444331 1113555555555555555
Q ss_pred CcccccccccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHHHhCCCHHHHHHH
Q 007621 411 PLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNI 490 (595)
Q Consensus 411 P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~~~G~s~~ev~~m 490 (595)
|.+|. . ..++++++++||.++|++.++|
T Consensus 265 P~il~-------------~------------------------------------s~~~l~~k~~fl~~mg~~~~~i--- 292 (343)
T 3mva_O 265 PDVIF-------------L------------------------------------AEKKFNDKIDCLMEENISISQI--- 292 (343)
T ss_dssp GGGGG-------------S------------------------------------CHHHHHHHHHHHHTTTCCHHHH---
T ss_pred Cchhc-------------c------------------------------------cHHHHHHHHHHHHHcCCCHHHH---
Confidence 55553 0 1246889999999999999886
Q ss_pred HHhCCcccccChHHHHHHHHHHHHHhCCChHHHhhcCcccccccccccchHH
Q 007621 491 VKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCK 542 (595)
Q Consensus 491 i~~~P~iL~~s~e~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sleri~pR~~ 542 (595)
.++|++|.+|.|+|++|++||.+ .|+..+. .+-.+|++|-++...|+.
T Consensus 293 -~~~P~~l~~sleri~~R~~~L~~-~g~~~~~--~~~~~l~~s~~~F~~~~~ 340 (343)
T 3mva_O 293 -IENPRVLDSSISTLKSRIKELVN-AGCNLST--LNITLLSWSKKRYEAKLK 340 (343)
T ss_dssp -HHSGGGGGSCHHHHHHHHHHHHT-TTCCSSS--SCGGGGGSCHHHHHHHHH
T ss_pred -HhCCHHHhcCHHHHHHHHHHHHH-CCCCCCC--CcchhhcCCHHHHHHHHh
Confidence 59999999999999999999987 6986551 222777777666655553
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=297.36 Aligned_cols=218 Identities=19% Similarity=0.341 Sum_probs=190.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHH
Q 007621 280 QVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGF 359 (595)
Q Consensus 280 ~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~f 359 (595)
++..++..|.++||++++|++++.++|.++. .++.+++.||..+|++.++|+++|.++|.+|+++++ +|+|++.|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 3455778888899999999999999999874 478889999999999999999999999999999985 69999999
Q ss_pred HHHhCCChhhHHHHHHhcCcccccccccchHHHHHhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchHH
Q 007621 360 LIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVE 439 (595)
Q Consensus 360 L~~~Gl~~~~I~~il~~~P~lL~~s~lk~~i~~L~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~ 439 (595)
|+++|++.++|.+++.++|++|+++
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s------------------------------------------------------- 144 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMR------------------------------------------------------- 144 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSC-------------------------------------------------------
T ss_pred HHHcCCCHHHHHHHHHhCchhhccC-------------------------------------------------------
Confidence 9999999999999999999888764
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH-HhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHhCC
Q 007621 440 KTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV-QAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCY 518 (595)
Q Consensus 440 k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~-~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~ 518 (595)
.+.+++++.+|. ++||+.+||..||.++|+||++|.++|++|++||+++||+
T Consensus 145 ---------------------------~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 145 ---------------------------QQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGI 197 (335)
T ss_dssp ---------------------------HHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCC
T ss_pred ---------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCC
Confidence 124566777786 8999999999999999999999999999999999999999
Q ss_pred ChHHHhhcCcccccccccccchHHHHHHHHHcCCCC----------CCCCcccccccChHHHHHHHhhhCCChHHHHHHH
Q 007621 519 PLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAK----------PTLSLSTILACSDAKFEKYFVDVHPEGPAMWESL 588 (595)
Q Consensus 519 ~~~~l~~~P~~L~~sleri~pR~~~~~~L~~kgl~~----------~~~~l~~il~~sek~F~~~~v~~~~~~~~~~~~~ 588 (595)
++++|++ |+||+||++||+|||.+ |+..|..+ ++++|.+++.+||++|+.++.+.+.+..+.|+++
T Consensus 198 ~~~eIvk-P~~l~ySLeRIkpRH~f---L~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k~ 273 (335)
T 4fp9_B 198 KHPDIVK-SEYLQYSLTKIKQRHIY---LERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKL 273 (335)
T ss_dssp CHHHHHH-TTGGGSCHHHHHHHHHH---HHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CHHHccc-cchhhccHHHHHHHHHH---HHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999997 99999999999999975 66667642 3567999999999999999999998888877654
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.96 E-value=1.5e-29 Score=257.61 Aligned_cols=214 Identities=18% Similarity=0.234 Sum_probs=177.9
Q ss_pred HHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCC
Q 007621 214 ASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGY 293 (595)
Q Consensus 214 ~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~ 293 (595)
.+.+++|.++|++.++|.+....+|.+|..++++++.|.+++| +++|+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL--------------------------------~~lG~ 53 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFL--------------------------------KDVGI 53 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHH--------------------------------HHHTC
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHH--------------------------------HHcCC
Confidence 4678888888888888877777777778888877676655544 44888
Q ss_pred CHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHH-HHhCCChhhHHH
Q 007621 294 NEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFL-IEIGMGMKDISN 372 (595)
Q Consensus 294 s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL-~~~Gl~~~~I~~ 372 (595)
++++|++++.++|.+|.++.++ +.|+++||+++|++.+++++++.++|++|+++++ +++|+++|| +++|++.+++.+
T Consensus 54 ~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ 131 (270)
T 3m66_A 54 EDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRD 131 (270)
T ss_dssp CGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHH
T ss_pred CHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHH
Confidence 8888888888888888877775 8888888888888888888888888888888887 488888888 578888888888
Q ss_pred HHHhcCcccccc--cccchHHHH-HhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchHHHHHHHHHcCC
Q 007621 373 MVLMHAELMGSC--SLKGPKTVC-SKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGY 449 (595)
Q Consensus 373 il~~~P~lL~~s--~lk~~i~~L-~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf 449 (595)
++.++|.+++.+ .++++++++ .++|++.+++..++.++|++|. .
T Consensus 132 ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~-------------~-------------------- 178 (270)
T 3m66_A 132 LVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLT-------------A-------------------- 178 (270)
T ss_dssp HHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGT-------------S--------------------
T ss_pred HHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhe-------------e--------------------
Confidence 888888888886 467888865 6799999999999999998885 1
Q ss_pred CCChhHHHHHHHHhhcChhHHHHHHHHHH-HhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHH
Q 007621 450 VENSEEVTKALKQFRGRGDQLQERFDCLV-QAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKN 514 (595)
Q Consensus 450 ~~~~~~~~~al~~~~~~~~~l~~r~~~L~-~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~ 514 (595)
+.+++++|++||. ++|++.++| .++|.+|++|.++|+++++|+..
T Consensus 179 ----------------s~~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 179 ----------------NKMKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLFKVKERHLFLTY 224 (270)
T ss_dssp ----------------CHHHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHHHHHHHHHHHHH
Confidence 1247899999998 899999875 59999999999999999999986
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.89 E-value=3.5e-23 Score=215.23 Aligned_cols=174 Identities=16% Similarity=0.260 Sum_probs=152.7
Q ss_pred HHHHCCCCcCCCccccC--ccccccCCcchhhhHHHHHhhcCCCcchHHHHHHhcccccccCchhhHHHHHHHHHCCCCh
Q 007621 150 FFESLGLSQSELSPLLP--RHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSK 227 (595)
Q Consensus 150 fl~slGls~~~l~~ll~--~~~l~~s~d~~l~p~~~~L~~~g~s~~~i~~~~k~~p~ll~~~~~~l~~~l~~L~~lGls~ 227 (595)
+|.++|+++.++++++. |.++ ..++.+.+.+|..+|++.+.|+++++++|++|+++.+.++++++||+++|++.
T Consensus 52 ~L~d~Gfs~~~i~~il~~~P~il----~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~ 127 (335)
T 4fp9_B 52 SLLDMGFSNAHINELLSVRRGAS----LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGE 127 (335)
T ss_dssp HHHHTTCCHHHHHHHHHHCSSCC----HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHCCCCHHHHHHHHHhCcccc----hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCH
Confidence 57778888888888766 5543 45688999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCC
Q 007621 228 NTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPA 307 (595)
Q Consensus 228 ~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~ 307 (595)
.+|.+++.++|++|+.+.++ +...+.+|. .++||+.++|..++.++|+
T Consensus 128 ~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~-------------------------------~~lGfS~~ev~~mv~r~P~ 175 (335)
T 4fp9_B 128 GKLKRVLYCCPEIFTMRQQD-INDTVRLLK-------------------------------EKCLFTVQQVTKILHSCPS 175 (335)
T ss_dssp TTHHHHHHHCGGGGTSCHHH-HHHHHHHHH-------------------------------HTSCCCHHHHHHHHHHCGG
T ss_pred HHHHHHHHhCchhhccChHH-HHHHHHHHH-------------------------------HHcCCCHHHHHHHHHhCCh
Confidence 99999999999999999874 655444433 3699999999999999999
Q ss_pred ccccCchhhHHHHHHHHHH-cCCChhHHHHHHhhCCceeeccccccHHHHHHHHHHhCCC
Q 007621 308 LVFEGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMG 366 (595)
Q Consensus 308 iL~~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl~ 366 (595)
||.++ .++|+++++||.+ +|++.++|. + |.+|+||++ +|+||+.||+.+|.-
T Consensus 176 lL~~S-~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~lG~~ 228 (335)
T 4fp9_B 176 VLRED-LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLT-KIKQRHIYLERLGRY 228 (335)
T ss_dssp GGTSC-HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHH-HHHHHHHHHHHHTSC
T ss_pred hhhCC-HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHH-HHHHHHHHHHHcCCc
Confidence 99975 7799999999997 699998874 3 999999998 899999999999974
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.26 E-value=5.4e-11 Score=105.82 Aligned_cols=184 Identities=21% Similarity=0.328 Sum_probs=144.0
Q ss_pred HHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHHHHhCCChhhHHHHHHhcCcccccccccchHHHHHhcCCCh
Q 007621 321 FGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGR 400 (595)
Q Consensus 321 v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~~P~lL~~s~lk~~i~~L~~lGv~~ 400 (595)
+.-|.-+|+.++-++-++.+.|++|...+ -.++.+-.||+.+|+++..+.+++..+|.++++. .
T Consensus 37 isefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmr---------------q 100 (239)
T 4fzv_B 37 ISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR---------------Q 100 (239)
T ss_dssp HHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC---------------H
T ss_pred HHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHH---------------H
Confidence 44455568888888888888888888877 4677778888888888888888888888877753 0
Q ss_pred hHHHHHHHhCCcccccccccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH-H
Q 007621 401 ESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV-Q 479 (595)
Q Consensus 401 ~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~-~ 479 (595)
. .+.+.+..|+ .
T Consensus 101 q-------------------------------------------------------------------dindtvrllkek 113 (239)
T 4fzv_B 101 Q-------------------------------------------------------------------DINDTVRLLKEK 113 (239)
T ss_dssp H-------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred h-------------------------------------------------------------------hHhHHHHHHHHh
Confidence 0 1223344555 7
Q ss_pred hCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHhCCChHHHhhcCcccccccccccchHHHHHHHHH------cCCC
Q 007621 480 AGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRE------RGVA 553 (595)
Q Consensus 480 ~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sleri~pR~~~~~~L~~------kgl~ 553 (595)
+-|+..++..++..+|.+|.-....++-|+.|-.-.||+...+|++. .||.||+..|+.||-+++.|-. +|-.
T Consensus 114 clftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-eylqysltkikqrhiylerlgryqtpdkkgqt 192 (239)
T 4fzv_B 114 CLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLTKIKQRHIYLERLGRYQTPDKKGQT 192 (239)
T ss_dssp SCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHHHHHHHHHHHHHHTCCCCCCSSSCC
T ss_pred HHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHHHHHHHHhHHHHhcccCCCCccCCc
Confidence 78999999999999999999999999999999999999999999985 8999999999999987666632 2221
Q ss_pred -CCCCCcccccccChHHHHHHHhhhCCChHHHHHHH
Q 007621 554 -KPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESL 588 (595)
Q Consensus 554 -~~~~~l~~il~~sek~F~~~~v~~~~~~~~~~~~~ 588 (595)
.|+.-+.+++..||.+|.++-.+-.-+..++++++
T Consensus 193 qipnpllkdilrvseaeflartactsveefqvfkkl 228 (239)
T 4fzv_B 193 QIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKL 228 (239)
T ss_dssp SSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHHH
T ss_pred cCCChHHHHHHHHhHHHHHHHHhcccHHHHHHHHHH
Confidence 23567889999999999999887766666666554
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.17 E-value=1.4e-05 Score=71.19 Aligned_cols=150 Identities=17% Similarity=0.304 Sum_probs=124.8
Q ss_pred hhhhHHHHHhhcCCCcchHHHHHHhcccccccCchhhHHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHHHH
Q 007621 177 VLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKL 256 (595)
Q Consensus 177 ~l~p~~~~L~~~g~s~~~i~~~~k~~p~ll~~~~~~l~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L 256 (595)
++...+.-+.-+|...+-+.-++++.|.++...--.+..+-.+|+.+|+....+.+++-+||.++++.-. ++...|..|
T Consensus 32 qlldiisefillglnpepvcvvlkkspqllklpimqmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrll 110 (239)
T 4fzv_B 32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL 110 (239)
T ss_dssp TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence 3444555566679999999999999999999887778888999999999999999999999999998854 477777766
Q ss_pred HHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHH-HcCCChhHHH
Q 007621 257 KELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLL-KLGLKMNEVY 335 (595)
Q Consensus 257 ~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~-~lGl~~~~i~ 335 (595)
++ ..-|+-.++.+++..+|.++..+.+ .+.-+++|-- .+|+...+|.
T Consensus 111 ke-------------------------------kclftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdiv 158 (239)
T 4fzv_B 111 KE-------------------------------KCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIV 158 (239)
T ss_dssp HH-------------------------------HSCCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHH
T ss_pred HH-------------------------------hHHhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchh
Confidence 65 4778999999999999999997654 8888888766 6899998874
Q ss_pred HHHhhCCceeeccccccHHHHHHHHHHhCC
Q 007621 336 SLFSQNPQILSSKFVKNLLQAVGFLIEIGM 365 (595)
Q Consensus 336 ~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl 365 (595)
+ ...|.||+ ..++.+.-||+.+|-
T Consensus 159 k-----seylqysl-tkikqrhiylerlgr 182 (239)
T 4fzv_B 159 K-----SEYLQYSL-TKIKQRHIYLERLGR 182 (239)
T ss_dssp H-----TTGGGSCH-HHHHHHHHHHHHHTC
T ss_pred H-----HHHHHHHH-HHHHHHHhHHHHhcc
Confidence 3 35677888 579999999999884
No 9
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=95.18 E-value=0.14 Score=56.34 Aligned_cols=230 Identities=17% Similarity=0.241 Sum_probs=120.0
Q ss_pred HHHHHHhcCCCCHHHHHHHhccC-----chHHHHHHh----cCC-CchhHHhhhcc---ccccCccccchh-HHHHCCCC
Q 007621 92 LFDYLHSTRSLGYMDAEHISKNS-----PDFVLNLLS----KID-SGKDVTRSLMR---FLRYNPINEFEP-FFESLGLS 157 (595)
Q Consensus 92 ~~~YL~~tcgLs~~~A~~~Sk~s-----P~~v~~lL~----~~~-s~~~v~~~~p~---~L~~~p~~~l~p-fl~slGls 157 (595)
+..-|-..+|||++|-..|+.|. -.+|.+++. .+| +..||++--.- --...-...++| ..+..|++
T Consensus 245 ~lp~l~~~~gls~~qvVaIAsn~GGkQALeaV~~llp~L~~~~gls~~qvvaIAsn~GGkQALetV~~llp~L~~~~glt 324 (1047)
T 3ugm_A 245 LLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324 (1047)
T ss_dssp HHHHHHHHSCCCHHHHHHHHSSTTHHHHHHHHHHHSHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhhhhhhccCCCHHHHHHHHhcCcchHHHHHHHHHhhhhhccccCCHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCC
Confidence 33445555788888888887762 334444333 245 66665542210 000011223556 44468999
Q ss_pred cCCCccccCccccccCCcchhhhH----HHHHh-hcCCCcchHHHHHHhcccccccC-chhhHHHHHHHHH-CCCChHHH
Q 007621 158 QSELSPLLPRHLMFLSDDEVLLDN----FHVLC-DYGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYEN-LGLSKNTV 230 (595)
Q Consensus 158 ~~~l~~ll~~~~l~~s~d~~l~p~----~~~L~-~~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~-lGls~~~I 230 (595)
+.++..|-.. +.-++-++. +-.|+ .+|++.+++..|-.... +.. -+.+..-+-.|.+ .|+++++|
T Consensus 325 p~qvVaIAsn-----~GGkQALe~V~~llpvL~~~~gls~~qvVaIAsn~G---GkQALe~V~~llp~L~~~~gls~~~v 396 (1047)
T 3ugm_A 325 PDQVVAIASH-----DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG---GKQALETVQRLLPVLCQAHGLTPDQV 396 (1047)
T ss_dssp HHHHHHHHSS-----SSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHSSTT---HHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHheeeccc-----CccHHHHHHHHHHhhhhhhhccCCHHHhhhhhhcCc---hHHHHHHHHHhhhhhhhhcCCCHHHH
Confidence 9999877552 122233333 34556 58999999988753311 001 1333333445544 79999888
Q ss_pred HHHHHhCCcceecCccchHHHHHHHH-----HHcCCCCcccccccCCC-CCCChhhhHHHHHHHH-hcCCCHHHHHHHHH
Q 007621 231 IKLVSCCPSLLIGGVDSRFVKVLEKL-----KELGFKNDWIGRYLPGK-GSYNWDQVSETLDFLY-KIGYNEVQLLNLFK 303 (595)
Q Consensus 231 ~klv~~~P~lL~~~~~~~l~~~v~~L-----~~lGv~~~~~~~~l~~~-~~~~~~~~~~~l~~l~-~lG~s~~~I~~lv~ 303 (595)
.++... .. +.--+.|..| .+-||.|+++....+.. .....+.+.+.+-.|. ..|++.++|-.|-.
T Consensus 397 vaiA~~------GG--~qALe~V~~L~p~l~~~~glt~~qvv~IAsn~GGkQALe~V~~llp~L~~~~glt~aqvVaIAs 468 (1047)
T 3ugm_A 397 VAIASN------GG--KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468 (1047)
T ss_dssp HHHHHH------TH--HHHHHHHHHHHHHHHTTSSCCHHHHHHHHSSTTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHSS
T ss_pred HHHhcc------cc--hhHHHHHhhccchhhhhcCCCHHHhhhhhccCchHHHHHHHHHHhHHhhcccCCCHHHHHHHHh
Confidence 888642 11 1111122222 23577777766555543 2333445555555565 57888888877665
Q ss_pred hCCCccccCchhhHHHHHHHHHH-cCCChhHHHHHHhh
Q 007621 304 TNPALVFEGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQ 340 (595)
Q Consensus 304 ~~P~iL~~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~ 340 (595)
..-.--. -+.+.....-+.. .|++.++|..|...
T Consensus 469 n~GGkQA---LeaV~~llpvl~~~~gls~~qvvaiA~n 503 (1047)
T 3ugm_A 469 HDGGKQA---LETVQQLLPVLCQAHGLTPDQVVAIASN 503 (1047)
T ss_dssp STTHHHH---HHHHHHHHHHHHHHSCCCSHHHHHHHSS
T ss_pred cCcHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 5311100 0122222222333 58888888777544
No 10
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=93.16 E-value=0.21 Score=55.04 Aligned_cols=143 Identities=15% Similarity=0.247 Sum_probs=74.3
Q ss_pred chh-HHHHCCCCcCCCccccCccccccCCcc----hhhhHHHHHh-hcCCCcchHHHHHHhcccccccC-chhhHHHHHH
Q 007621 147 FEP-FFESLGLSQSELSPLLPRHLMFLSDDE----VLLDNFHVLC-DYGIPRSKMGKMYVEATEIFRHD-RGVLASKLWA 219 (595)
Q Consensus 147 l~p-fl~slGls~~~l~~ll~~~~l~~s~d~----~l~p~~~~L~-~~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~ 219 (595)
|+| ..+..||++.++..|-+. +.-+ .+...+..|+ .+|++.++|.+|-..... .. -+.+..-+..
T Consensus 414 L~p~l~~~~glt~~qvv~IAsn-----~GGkQALe~V~~llp~L~~~~glt~aqvVaIAsn~GG---kQALeaV~~llpv 485 (1047)
T 3ugm_A 414 LLPVLCQAHGLTPDQVVAIASH-----DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG---KQALETVQQLLPV 485 (1047)
T ss_dssp HHHHHHTTSSCCHHHHHHHHSS-----TTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHSSSTTH---HHHHHHHHHHHHH
T ss_pred ccchhhhhcCCCHHHhhhhhcc-----CchHHHHHHHHHHhHHhhcccCCCHHHHHHHHhcCcH---HHHHHHHHHHHHH
Confidence 445 445677777777766441 1111 2233344555 578888888876432110 00 1222222223
Q ss_pred H-HHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHH-----HcCCCCcccccccCCC-CCCChhhhHHHHHHHH-hc
Q 007621 220 Y-ENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLK-----ELGFKNDWIGRYLPGK-GSYNWDQVSETLDFLY-KI 291 (595)
Q Consensus 220 L-~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~-----~lGv~~~~~~~~l~~~-~~~~~~~~~~~l~~l~-~l 291 (595)
| +..|+++++|.++...+= .+.--+.|..+. ..|+.++++....+.. .....+.+.+-+-.|+ ..
T Consensus 486 l~~~~gls~~qvvaiA~n~G-------GkQALeaV~~l~p~l~~~~gls~~qVVaIAsN~GGkQALeaV~~~lp~Lr~a~ 558 (1047)
T 3ugm_A 486 LCQAHGLTPDQVVAIASNIG-------GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 558 (1047)
T ss_dssp HHHHSCCCSHHHHHHHSSTT-------HHHHHHHHHHHSGGGTTTTCCCSHHHHHHHSSTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHhcCCCHHHHHHHHhccc-------hHHHHHHHHHhhhhhccccCCCHHHhhhhhcCCcHHHHHHHHHHHhHHHHHHh
Confidence 3 348888888888865421 111222333332 4667777665555443 2334455555556666 47
Q ss_pred CCCHHHHHHHHHh
Q 007621 292 GYNEVQLLNLFKT 304 (595)
Q Consensus 292 G~s~~~I~~lv~~ 304 (595)
|+|.++|..|-..
T Consensus 559 ~ls~~qVVaIAsN 571 (1047)
T 3ugm_A 559 GLTPDQVVAIASN 571 (1047)
T ss_dssp CCTHHHHHHHTTS
T ss_pred CCCHHHeeeeccC
Confidence 8888877666533
No 11
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=86.29 E-value=3.6 Score=42.59 Aligned_cols=296 Identities=14% Similarity=0.162 Sum_probs=146.5
Q ss_pred HHHHHHhcCCCCHHHHHHHhcc-----CchHHHHHHh----cCC-CchhHHhhhcc-----ccccCccccchhHHHH-CC
Q 007621 92 LFDYLHSTRSLGYMDAEHISKN-----SPDFVLNLLS----KID-SGKDVTRSLMR-----FLRYNPINEFEPFFES-LG 155 (595)
Q Consensus 92 ~~~YL~~tcgLs~~~A~~~Sk~-----sP~~v~~lL~----~~~-s~~~v~~~~p~-----~L~~~p~~~l~pfl~s-lG 155 (595)
+..-|...+|||+++-..|+-| .-..|..++- .+| +.++|++--.- -|-+ ...+.|-|.. .|
T Consensus 125 ~lpvL~~~~~Ls~~qVVaIAsn~GGkQALeaV~~llpvL~~a~gls~~qVvaIAsN~GGkQALea--V~~llpvl~~~~g 202 (499)
T 3v6t_A 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET--VQRLLPVLCQAHG 202 (499)
T ss_dssp HHHHHHHTSCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTHHHHHHH--HHHHHHHHHHHHC
T ss_pred hhHHhhhhcCCCHHHhHHHhhcCCcHHHHHHHHHhhHHHHHhcCCCHHHHHHHhcccchHHHHHH--HHHhhhhHHhhcc
Confidence 3444444567888877777665 2334443332 366 66665542210 0111 1234565554 78
Q ss_pred CCcCCCccccCccccccCCcc----hhhhHHHHHhh-cCCCcchHHHHHHhcccccccC-chhhHHHHHHHHH-CCCChH
Q 007621 156 LSQSELSPLLPRHLMFLSDDE----VLLDNFHVLCD-YGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYEN-LGLSKN 228 (595)
Q Consensus 156 ls~~~l~~ll~~~~l~~s~d~----~l~p~~~~L~~-~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~-lGls~~ 228 (595)
+++.++..+-+.+ .-+ .+..-.-.||. +|++.++|..|-..... .. -+.+..-+-.|++ .|++.+
T Consensus 203 ls~~qVVaiAsn~-----GGkQALeaV~~llp~L~~a~~ls~~qVvaIAsN~GG---kQALeaV~~~lpvl~~~~~lt~a 274 (499)
T 3v6t_A 203 LTPQQVVAIASNG-----GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTPQ 274 (499)
T ss_dssp CCHHHHHHHHSST-----THHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHhhcc-----chHHHHHHHHHhhhHHHhhcCCCHHHhhhhhcccch---HHHHHHHHHhcccccccccCCHH
Confidence 8888887775411 011 22333445665 78888888877543210 00 1233333334544 799999
Q ss_pred HHHHHHHhCCc--ceecCccchHHHHHHHHH-HcCCCCcccccccCCC-CCCChhhhHHHHHHHHh-cCCCHHHHHHHHH
Q 007621 229 TVIKLVSCCPS--LLIGGVDSRFVKVLEKLK-ELGFKNDWIGRYLPGK-GSYNWDQVSETLDFLYK-IGYNEVQLLNLFK 303 (595)
Q Consensus 229 ~I~klv~~~P~--lL~~~~~~~l~~~v~~L~-~lGv~~~~~~~~l~~~-~~~~~~~~~~~l~~l~~-lG~s~~~I~~lv~ 303 (595)
+|.++-...-. .| + .+....-.|+ ..|+.+.++....+.. .....+.+.+-.-.|+. +|++.+++..|-.
T Consensus 275 qVVaIAsn~GGkQAL----e-aV~~llpvL~~~~~L~~~qVvaIAsN~GGkQALeaV~~l~p~L~~a~gls~~qVVaIAs 349 (499)
T 3v6t_A 275 QVVAIASNSGGKQAL----E-TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349 (499)
T ss_dssp HHHHHHSSTTHHHHH----H-HHHHHHHHHHTTTCSCHHHHHHHHTSTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHS
T ss_pred HeeeeccCCccHHHH----H-HHHHhhHHHHHhcCCCHHHHHHHhhCCchHHHHHHHHHHhHHHHHhcCCCHHHHHHHhc
Confidence 99888532200 00 0 0111122223 2466666665555432 23334555555666664 8999999887764
Q ss_pred hCCCccccCchhhHHHHHHHHHH-cCCChhHHHHHHhhCCceeeccccccHHHHHHHH-HHhCCChhhHHHHHHhcCccc
Q 007621 304 TNPALVFEGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFL-IEIGMGMKDISNMVLMHAELM 381 (595)
Q Consensus 304 ~~P~iL~~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL-~~~Gl~~~~I~~il~~~P~lL 381 (595)
..-.== --+.+....--|+. .|++.++|..+-...-.--. +| -+..-.-.| ...|++.++|..+-....-==
T Consensus 350 n~GGkQ---ALeaV~~llpvL~~a~~Ls~~qVVaIAsn~GGkqA--Le-aV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQ 423 (499)
T 3v6t_A 350 HDGGKQ---ALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQA--LE-TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 423 (499)
T ss_dssp STTHHH---HHHHHHHHHHHHHHTTCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHHHHCCCHHHHHHHHSSTTHHH
T ss_pred cCccHH---HHHHHHHhCcchHhhhcCCHHHHHhHHhccccHHH--HH-HHHHHHHHhhhhccCCHHHeeehhccCccHH
Confidence 431100 01233333344454 49999998776443211000 11 111112233 257888888876632110000
Q ss_pred ccccccchHHHHHh-cCCChhHHHHHHH
Q 007621 382 GSCSLKGPKTVCSK-LKVGRESLCQIIK 408 (595)
Q Consensus 382 ~~s~lk~~i~~L~~-lGv~~~~l~~lI~ 408 (595)
....++...-.|+. .|++..++..|-.
T Consensus 424 ALeaV~~~lpvLr~~~glt~aqVVaIAs 451 (499)
T 3v6t_A 424 ALETVQRLLPVLCQAHGLTPQQVVAIAS 451 (499)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHS
T ss_pred HHHHHHHhhhHHHHHhCCCHHHHHhhhh
Confidence 00012333445555 7998877665544
No 12
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=82.15 E-value=1.2 Score=32.90 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=21.1
Q ss_pred hhCCceeeccccccHHHHHHHHHHhCCChhhHHHHHHh
Q 007621 339 SQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLM 376 (595)
Q Consensus 339 ~~~P~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~ 376 (595)
.+.|.+-..++ ..++.||+..|+++++|...+.+
T Consensus 20 L~dp~V~~sp~----~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 20 LQNSRVRQSPL----ATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHCTTGGGSCH----HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hCChhhhcCCH----HHHHHHHHHcCCCHHHHHHHHHc
Confidence 34455544443 34677777777777777776654
No 13
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=80.62 E-value=8.1 Score=39.63 Aligned_cols=238 Identities=16% Similarity=0.166 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhccC-----chHHHHHHh---c-CC-CchhHHhhhc-----cccccCccccchhHH-HH
Q 007621 90 EVLFDYLHSTRSLGYMDAEHISKNS-----PDFVLNLLS---K-ID-SGKDVTRSLM-----RFLRYNPINEFEPFF-ES 153 (595)
Q Consensus 90 ~~~~~YL~~tcgLs~~~A~~~Sk~s-----P~~v~~lL~---~-~~-s~~~v~~~~p-----~~L~~~p~~~l~pfl-~s 153 (595)
..+..-|...+|||+++-..|+.|. -.+|.+++. . ++ +.++|++--. .-|-+ ...++|-| +.
T Consensus 164 ~~llpvL~~a~~Ls~~qVVaIAsn~GGkQALeaV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQALea--V~~llpvl~~~ 241 (463)
T 4hpz_A 164 QRLLPVLCQDHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET--VQRLLPVLCQD 241 (463)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhhccccCCHHHHHHHhhccccHHHHHH--HHhhhhhhhhh
Confidence 3344445445788888888887763 345544433 2 45 6666554221 00111 11255644 34
Q ss_pred CCCCcCCCccccCccccccCCcchhhhHHHHHhh-cCCCcchHHHHHHhcccccccC-chhhHHHHHHHHH-CCCChHHH
Q 007621 154 LGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCD-YGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYEN-LGLSKNTV 230 (595)
Q Consensus 154 lGls~~~l~~ll~~~~l~~s~d~~l~p~~~~L~~-~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~-lGls~~~I 230 (595)
.||++.++..|-...- -..--..+..-.-.|+. +|++.++|..|-..+.. .. -+.+..-.-.|++ .|++.++|
T Consensus 242 ~gls~aqVVaIAsn~G-GkQALeaV~~llP~L~~~~gls~~qVVaIAsN~GG---kQALeaV~~l~p~Lr~~~~ls~~qV 317 (463)
T 4hpz_A 242 HGLTPQQVVAIASNIG-GKQALETVQRLLPVLCQDHGLTPDQVVAIASNDGG---KQALETVQRLLPVLCQDHGLTPEQV 317 (463)
T ss_dssp SCCCHHHHHHHHSSTT-HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccCCHHHHHHHhcccc-hHHHHHHHHhhchhhhhccCCCHHHhhhhhcCccH---HHHHHHHHHHhHHHHhhcCCCHHHh
Confidence 7888888877744100 00000122233345555 78888888876533210 00 1233333334444 68888888
Q ss_pred HHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHH-hcCCCHHHHHHHHHhCCCcc
Q 007621 231 IKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLY-KIGYNEVQLLNLFKTNPALV 309 (595)
Q Consensus 231 ~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~-~lG~s~~~I~~lv~~~P~iL 309 (595)
.++-.+. . =+..++.++. -.-.|+ ..|++.++|..|-...-.-=
T Consensus 318 VaIAsN~---------G-GkQALeaV~~-------------------------llp~Lr~~~~ls~~qVvaIAsn~GGkQ 362 (463)
T 4hpz_A 318 VAIASNG---------G-GKQALETVQR-------------------------LLPVLCQAHGLTPDQVVAIASHDGGKQ 362 (463)
T ss_dssp HHHHSST---------T-HHHHHHHHHH-------------------------HHHHHHHHSCCCHHHHHHHHTSTTHHH
T ss_pred hhhhcCc---------c-hHHHHHHHHH-------------------------hhhhcchhccCCHHHhHhhhhcCccHH
Confidence 8774321 0 1223333322 333445 37778777776664321100
Q ss_pred ccCchhhHHHHHHHHHH-cCCChhHHHHHHhhCCceeeccccccHHHHHHHHH-HhCCChhhHHHHH
Q 007621 310 FEGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLI-EIGMGMKDISNMV 374 (595)
Q Consensus 310 ~~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~-~~Gl~~~~I~~il 374 (595)
--+.+....--|+. .|++.++|..+-...-.=-.. | -+..-.-.|. ..|++..+|..+-
T Consensus 363 ---ALeaV~~llpvL~~a~gls~aqVVaIAsn~GGkQAL--e-aV~~llpvL~~a~gls~~qVVaIA 423 (463)
T 4hpz_A 363 ---ALETVQRLLPVLCQDHGLTPAQAVAIANNNGGKQAL--E-TVQRLLPVLCQDHGLTPDQVVAIA 423 (463)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCHHHHHHHHSSSSCHHHH--H-HHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ---HHHHHHHHhHHHHHHhCCCHHHhhhhhccCccHHHH--H-HHHHhchhhhhhccCCHHHhhhhh
Confidence 11233444444554 578877776664443211111 0 1111222332 3677777777664
No 14
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=80.51 E-value=3.6 Score=42.18 Aligned_cols=206 Identities=17% Similarity=0.179 Sum_probs=116.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHhccC-----chHHHHHHh----cCC-CchhHHhhhc-----cccccCccccchhHHHH-C
Q 007621 91 VLFDYLHSTRSLGYMDAEHISKNS-----PDFVLNLLS----KID-SGKDVTRSLM-----RFLRYNPINEFEPFFES-L 154 (595)
Q Consensus 91 ~~~~YL~~tcgLs~~~A~~~Sk~s-----P~~v~~lL~----~~~-s~~~v~~~~p-----~~L~~~p~~~l~pfl~s-l 154 (595)
.+..-|...+|||+++-..|+-|. -.+|..++- .+| +.++|++--. .-|-+ ...++|-|.. .
T Consensus 199 ~llpvl~~~~~Ls~aqVVaIAsn~GGkQALeaV~~llpvl~~~~gls~aqVVaIAsn~GGkQALea--V~~llP~L~~~~ 276 (463)
T 4hpz_A 199 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPQQVVAIASNIGGKQALET--VQRLLPVLCQDH 276 (463)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHHHHHHH--HHHHHHHHHHTT
T ss_pred HHHHHhhccccCCHHHHHHHhhccccHHHHHHHHhhhhhhhhhccCCHHHHHHHhcccchHHHHHH--HHhhchhhhhcc
Confidence 344555555899999999998873 445544332 367 8887665321 01111 2336676666 8
Q ss_pred CCCcCCCccccCccccccCCcchhhhHHHHHhh-cCCCcchHHHHHHhcccccccC-chhhHHHHHHHH-HCCCChHHHH
Q 007621 155 GLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCD-YGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYE-NLGLSKNTVI 231 (595)
Q Consensus 155 Gls~~~l~~ll~~~~l~~s~d~~l~p~~~~L~~-~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~-~lGls~~~I~ 231 (595)
|+++.++..+-+.+-=-..+ ..+..-.-.||. +|++.++|..|-..... .. -+.+..-.-.|+ ..|++.++|.
T Consensus 277 gls~~qVVaIAsN~GGkQAL-eaV~~l~p~Lr~~~~ls~~qVVaIAsN~GG---kQALeaV~~llp~Lr~~~~ls~~qVv 352 (463)
T 4hpz_A 277 GLTPDQVVAIASNDGGKQAL-ETVQRLLPVLCQDHGLTPEQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTPDQVV 352 (463)
T ss_dssp CCCHHHHHHHHTSTTHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred CCCHHHhhhhhcCccHHHHH-HHHHHHhHHHHhhcCCCHHHhhhhhcCcch---HHHHHHHHHhhhhcchhccCCHHHhH
Confidence 99999998885521000000 123333456665 89999999987533110 00 133333444555 4899999999
Q ss_pred HHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHh-cCCCHHHHHHHHHhCCCccc
Q 007621 232 KLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYK-IGYNEVQLLNLFKTNPALVF 310 (595)
Q Consensus 232 klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~-lG~s~~~I~~lv~~~P~iL~ 310 (595)
++-.+. .=+..++.++. -.-.|+. +|++.++|..|-...-.-=
T Consensus 353 aIAsn~----------GGkQALeaV~~-------------------------llpvL~~a~gls~aqVVaIAsn~GGkQ- 396 (463)
T 4hpz_A 353 AIASHD----------GGKQALETVQR-------------------------LLPVLCQDHGLTPAQAVAIANNNGGKQ- 396 (463)
T ss_dssp HHHTST----------THHHHHHHHHH-------------------------HHHHHHHHSCCCHHHHHHHHSSSSCHH-
T ss_pred hhhhcC----------ccHHHHHHHHH-------------------------HhHHHHHHhCCCHHHhhhhhccCccHH-
Confidence 985321 12344444433 3345553 7888888877766542100
Q ss_pred cCchhhHHHHHHHHHH-cCCChhHHHHHHhh
Q 007621 311 EGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQ 340 (595)
Q Consensus 311 ~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~ 340 (595)
--+.+....--|+. .|++.++|..+-..
T Consensus 397 --ALeaV~~llpvL~~a~gls~~qVVaIAsn 425 (463)
T 4hpz_A 397 --ALETVQRLLPVLCQDHGLTPDQVVAIASN 425 (463)
T ss_dssp --HHHHHHHHHHHHHHHSCCCHHHHHHHHTT
T ss_pred --HHHHHHHhchhhhhhccCCHHHhhhhhhc
Confidence 11233334444444 58888888766543
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=77.98 E-value=5 Score=29.57 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhC
Q 007621 469 QLQERFDCLVQAGLDSNVVRNIVKRA 494 (595)
Q Consensus 469 ~l~~r~~~L~~~G~s~~ev~~mi~~~ 494 (595)
.+..|++||++-|++.+||..++.|.
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 69999999999999999999998874
No 16
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=75.65 E-value=1.5 Score=45.63 Aligned_cols=115 Identities=11% Similarity=0.169 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceee-----ccc-ccc
Q 007621 279 DQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILS-----SKF-VKN 352 (595)
Q Consensus 279 ~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~-----~sl-e~~ 352 (595)
....+.|+-|.++||+++++.++++.. ..+....++||.+ |++...- ...|.--. ..- ...
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~--------~nn~~~A~e~L~~-gip~~~~----~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT-GIPGSPE----PEHGSVQESQVSEQPATEAA 232 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHS--------CSSTTHHHHTTTT-SSTTCSS----CCCCCCCCCCSSCCCCSSCC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh-CCCcccc----cccCCccccccccccCcccc
Confidence 346778999999999999999999863 3488889999964 4543200 00000000 000 000
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCcccccccccchHHHHHhcCCChhHHHHHHHhCCcccc
Q 007621 353 LLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLF 415 (595)
Q Consensus 353 l~p~~~fL~~~Gl~~~~I~~il~~~P~lL~~s~lk~~i~~L~~lGv~~~~l~~lI~~~P~~L~ 415 (595)
-...++||+.- =.-.++..+|+.+|.+|- .+|+.+|-..-++.++|..+|+.|.
T Consensus 233 ~~~~l~~Lr~~-pqf~~lR~~vq~nP~~l~--------~~lq~l~~~nP~l~~~I~~n~~~Fl 286 (368)
T 1oqy_A 233 GENPLEFLRDQ-PQFQNMRQVIQQNPALLP--------ALLQQLGQENPQLLQQISRHQEQFI 286 (368)
T ss_dssp SCCTTHHHHHS-HHHHHHHHSTTTCTTHHH--------HHHTTTTTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHhcC-hHHHHHHHHHHhChHHHH--------HHHHHHHhhCHHHHHHHHHCHHHHH
Confidence 00123555431 011355666666676553 3566788888888888888888875
No 17
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=75.65 E-value=18 Score=31.08 Aligned_cols=98 Identities=8% Similarity=0.072 Sum_probs=64.4
Q ss_pred hHHHHHhhcCCCcchHHHHHHhcccccccCchhhHHHHHHH------HHCCCChHHHHHHHHhCCcceecCccchHHHHH
Q 007621 180 DNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAY------ENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVL 253 (595)
Q Consensus 180 p~~~~L~~~g~s~~~i~~~~k~~p~ll~~~~~~l~~~l~~L------~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v 253 (595)
..+.-|.++|++.+.+.+++..+.. ..+..+++| .+.|++..++...+..+. .+.. ..
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g~-------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~----~~~~----~~- 73 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAGA-------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQ----CSEE----KM- 73 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCS----SCHH----HH-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCc-------CHHHHHHHHHHhchhcccCCChhhhHHHHHhcc----CCcc----cc-
Confidence 4577888999999999999876542 233444444 456777777766655331 1111 01
Q ss_pred HHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH
Q 007621 254 EKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK 326 (595)
Q Consensus 254 ~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~ 326 (595)
|. ..+.+.-|.++||+.+++.+++..+ .+++...+++|..
T Consensus 74 ------------------------~~-~~~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~ 113 (118)
T 4ae4_A 74 ------------------------ME-FLQLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMA 113 (118)
T ss_dssp ------------------------HH-HHHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred ------------------------cc-CHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHH
Confidence 11 1236778888999999999998875 3577788888875
No 18
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=74.68 E-value=39 Score=28.93 Aligned_cols=90 Identities=12% Similarity=0.252 Sum_probs=54.0
Q ss_pred HHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCH
Q 007621 216 KLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNE 295 (595)
Q Consensus 216 ~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~ 295 (595)
-+..|.++|++...+.+.+..+ .+ +...+++||-. . .-|.+.|+++
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~~-----g~---~~e~amewL~~-------------------------h-~~L~d~~~d~ 56 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKAA-----GA---NIEQILDYLFA-------------------------H-GQLCEKGFDP 56 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH-----CS---CHHHHHHHHHH-------------------------H-HHHHHTTCCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH-----Cc---CHHHHHHHHHH-------------------------h-chhcccCCCh
Confidence 4667788888888888876653 11 36667777754 1 2245678888
Q ss_pred HHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhC
Q 007621 296 VQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQN 341 (595)
Q Consensus 296 ~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~ 341 (595)
.++...+..+..--. ....-...+.-|.++|++.+.+.+.+..+
T Consensus 57 ~~~e~~l~~~~~~~~--~~~~~~~~v~~L~eMGF~~~~a~~AL~~~ 100 (118)
T 4ae4_A 57 LLVEEALEMHQCSEE--KMMEFLQLMSKFKEMGFELKDIKEVLLLH 100 (118)
T ss_dssp HHHHHHHHHCSSCHH--HHHHHHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhhHHHHHhccCCcc--ccccCHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 888777765432100 00112245666667777777776666554
No 19
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=73.03 E-value=2.4 Score=32.86 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=24.2
Q ss_pred hhCCceeeccccccHHHHHHHHHHhCCChhhHHHHHHhc
Q 007621 339 SQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMH 377 (595)
Q Consensus 339 ~~~P~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~~ 377 (595)
.++|.+-..++ ..++.||+..|+++++|...+.+.
T Consensus 25 Lqdp~V~~sp~----~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 25 LQNSRVRQSPL----ATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HCSTTGGGSCH----HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCChhhhhCCH----HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 44566655554 347788888888888888877663
No 20
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=72.60 E-value=13 Score=38.47 Aligned_cols=268 Identities=16% Similarity=0.179 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHH---hcCCCCHHHHHHHhccC-----chHHHHHHh----cCC-CchhHHhhhcc-----ccccCccccc
Q 007621 86 TEAQEVLFDYLH---STRSLGYMDAEHISKNS-----PDFVLNLLS----KID-SGKDVTRSLMR-----FLRYNPINEF 147 (595)
Q Consensus 86 ~~a~~~~~~YL~---~tcgLs~~~A~~~Sk~s-----P~~v~~lL~----~~~-s~~~v~~~~p~-----~L~~~p~~~l 147 (595)
++|-.++.++|- ..+||++++-..|..|. -..|..++- .+| +.++|++--.- -|-+ ...+
T Consensus 150 kQALeaV~~llpvL~~a~gls~~qVvaIAsN~GGkQALeaV~~llpvl~~~~gls~~qVVaiAsn~GGkQALea--V~~l 227 (499)
T 3v6t_A 150 KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET--VQRL 227 (499)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHH--HHHH
T ss_pred HHHHHHHHHhhHHHHHhcCCCHHHHHHHhcccchHHHHHHHHHhhhhHHhhccCCHHHHHHHhhccchHHHHHH--HHHh
Confidence 455555555543 45899999999998872 334443332 245 55555432110 0000 1124
Q ss_pred hhHHHH-CCCCcCCCccccCccccccCCcch----hhhHHHHHhh-cCCCcchHHHHHHhcccccccC-chhhHHHHHHH
Q 007621 148 EPFFES-LGLSQSELSPLLPRHLMFLSDDEV----LLDNFHVLCD-YGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAY 220 (595)
Q Consensus 148 ~pfl~s-lGls~~~l~~ll~~~~l~~s~d~~----l~p~~~~L~~-~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L 220 (595)
+|-|.. .|+++.++..|-+.+ .-++ +..-.-.||. +|++.+++..+-..... .. -+.+..-.-.|
T Consensus 228 lp~L~~a~~ls~~qVvaIAsN~-----GGkQALeaV~~~lpvl~~~~~lt~aqVVaIAsn~GG---kQALeaV~~llpvL 299 (499)
T 3v6t_A 228 LPVLCQAHGLTPQQVVAIASNG-----GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG---KQALETVQRLLPVL 299 (499)
T ss_dssp HHHHTTTSCCCHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHH
T ss_pred hhHHHhhcCCCHHHhhhhhccc-----chHHHHHHHHHhcccccccccCCHHHeeeeccCCcc---HHHHHHHHHhhHHH
Confidence 555554 588888887664411 1111 2222345554 78888888777532110 00 12333333344
Q ss_pred H-HCCCChHHHHHHHHhCCc--ceecCccchHHHHHHHHHH-cCCCCcccccccCCC-CCCChhhhHHHHHHHHh-cCCC
Q 007621 221 E-NLGLSKNTVIKLVSCCPS--LLIGGVDSRFVKVLEKLKE-LGFKNDWIGRYLPGK-GSYNWDQVSETLDFLYK-IGYN 294 (595)
Q Consensus 221 ~-~lGls~~~I~klv~~~P~--lL~~~~~~~l~~~v~~L~~-lGv~~~~~~~~l~~~-~~~~~~~~~~~l~~l~~-lG~s 294 (595)
+ ..|++.++|.++-.+.=. .|. .+....-.|+. .|+.+.++....+.. .....+.+.+-+-.|+. +|++
T Consensus 300 ~~~~~L~~~qVvaIAsN~GGkQALe-----aV~~l~p~L~~a~gls~~qVVaIAsn~GGkQALeaV~~llpvL~~a~~Ls 374 (499)
T 3v6t_A 300 CQAHGLTPQQVVAIASNGGGKQALE-----TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 374 (499)
T ss_dssp HTTTCSCHHHHHHHHTSTTHHHHHH-----HHHHHHHHHHHTSCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHhcCCCHHHHHHHhhCCchHHHHH-----HHHHHhHHHHHhcCCCHHHHHHHhccCccHHHHHHHHHhCcchHhhhcCC
Confidence 4 458888888777554311 111 12222223333 677777665555432 22334444455556663 7999
Q ss_pred HHHHHHHHHhCCCccccCchhhHHHHHHHHH-HcCCChhHHHHHHhhCCceeeccccccHHHHHHHHH-HhCCChhhHHH
Q 007621 295 EVQLLNLFKTNPALVFEGSGQKVYVLFGRLL-KLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLI-EIGMGMKDISN 372 (595)
Q Consensus 295 ~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~-~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~-~~Gl~~~~I~~ 372 (595)
.++|..|-...-.-= --+.+....--+. ..|++.++|..+-...-.=-. +| .+..-.-.|+ ..|++..+|..
T Consensus 375 ~~qVVaIAsn~GGkq---ALeaV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQA--Le-aV~~~lpvLr~~~glt~aqVVa 448 (499)
T 3v6t_A 375 PEQVVAIASNGGGKQ---ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA--LE-TVQRLLPVLCQAHGLTPQQVVA 448 (499)
T ss_dssp HHHHHHHHSSTTHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHhHHhccccHH---HHHHHHHHHHHhhhhccCCHHHeeehhccCccHHH--HH-HHHHhhhHHHHHhCCCHHHHHh
Confidence 999988776642100 0122333333344 369999888776554422111 11 1222223443 36888888877
Q ss_pred HH
Q 007621 373 MV 374 (595)
Q Consensus 373 il 374 (595)
+-
T Consensus 449 IA 450 (499)
T 3v6t_A 449 IA 450 (499)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=62.46 E-value=15 Score=28.41 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHHHHhhc--Ch-hHHHHHHHHHHHhCCCHHHHHHHHHhC
Q 007621 456 VTKALKQFRG--RG-DQLQERFDCLVQAGLDSNVVRNIVKRA 494 (595)
Q Consensus 456 ~~~al~~~~~--~~-~~l~~r~~~L~~~G~s~~ev~~mi~~~ 494 (595)
+..|...+.. .. ..+..|+.||++-|++.+||..++++.
T Consensus 18 i~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 18 IATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3355554432 22 369999999999999999999999885
No 22
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=58.71 E-value=7.3 Score=28.43 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=9.5
Q ss_pred hHHHHHHHHHcCC
Q 007621 437 DVEKTEFLLRLGY 449 (595)
Q Consensus 437 ~~~k~~fl~~lGf 449 (595)
+.++++.|.+|||
T Consensus 11 ~~~~l~~L~~MGF 23 (53)
T 2knz_A 11 FQQQLEQLNSMGF 23 (53)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCC
Confidence 4567777777777
No 23
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=56.72 E-value=4.2 Score=42.24 Aligned_cols=42 Identities=12% Similarity=0.350 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCH
Q 007621 249 FVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNE 295 (595)
Q Consensus 249 l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~ 295 (595)
....|..|.+|||+++...+.+..... ++.+.+++|.+ |+.+
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~n----n~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYN----NPHRAVEYLLT-GIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCS----STTHHHHTTTT-SSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCC----CHHHHHHHHHh-CCCc
Confidence 778999999999999987766665332 45556777753 5543
No 24
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=56.34 E-value=5.1 Score=35.50 Aligned_cols=77 Identities=25% Similarity=0.351 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhcc--CchHHHHHHhcCCC-chhHHhhhccccccCcc--ccchhHHHHCCCCcCCCccc
Q 007621 90 EVLFDYLHSTRSLGYMDAEHISKN--SPDFVLNLLSKIDS-GKDVTRSLMRFLRYNPI--NEFEPFFESLGLSQSELSPL 164 (595)
Q Consensus 90 ~~~~~YL~~tcgLs~~~A~~~Sk~--sP~~v~~lL~~~~s-~~~v~~~~p~~L~~~p~--~~l~pfl~slGls~~~l~~l 164 (595)
..+.|-|..+.=|+-++++.+..+ .+|-+..+|.-+.+ .....+-+=..|.-.++ -.|.|||..+|++|++...-
T Consensus 44 ~~LLD~LL~~gvLs~EE~EiV~~~~T~~dKaRrLLDlV~sKGe~a~e~Ll~~Lqql~day~dl~pwl~ei~~~p~~~~~~ 123 (144)
T 4e9m_A 44 QCLVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQLADAYVDLRPWLLEIGFSPSLLTQS 123 (144)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHTSSSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCC-------
T ss_pred HHHHHHHHHcCCCCHHHHHHHhccCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHccccccchhHHHHHhCCCcHHHhcc
Confidence 477899999999999999999776 48888888887652 22222222222222222 24789999999999998754
Q ss_pred cC
Q 007621 165 LP 166 (595)
Q Consensus 165 l~ 166 (595)
.+
T Consensus 124 ~~ 125 (144)
T 4e9m_A 124 KV 125 (144)
T ss_dssp --
T ss_pred cc
Confidence 43
No 25
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.50 E-value=16 Score=26.07 Aligned_cols=39 Identities=10% Similarity=0.267 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHH
Q 007621 469 QLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKN 514 (595)
Q Consensus 469 ~l~~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~ 514 (595)
.-+++++-|.++||+++++..+++.+- .+++.-++||.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTT-------SCSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 455667777788888887777776432 235555666665
No 26
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=52.93 E-value=29 Score=25.15 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcC
Q 007621 282 SETLDFLYKIGY-NEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLG 328 (595)
Q Consensus 282 ~~~l~~l~~lG~-s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lG 328 (595)
.+.++-|.++|| +++....++... ..++...+++|.+.+
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHHcC
Confidence 346677777888 666666666652 236777777776644
No 27
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=49.85 E-value=18 Score=28.22 Aligned_cols=51 Identities=14% Similarity=0.341 Sum_probs=25.5
Q ss_pred HHHHHHcCCChhHHHHHHhhCCcee-eccccccHHHHH--HHHHHhCCChhhHHHHHH
Q 007621 321 FGRLLKLGLKMNEVYSLFSQNPQIL-SSKFVKNLLQAV--GFLIEIGMGMKDISNMVL 375 (595)
Q Consensus 321 v~fL~~lGl~~~~i~~~I~~~P~lL-~~sle~~l~p~~--~fL~~~Gl~~~~I~~il~ 375 (595)
++||.+.|++...-.++ -..+ .-.++..+.|-+ ++|+++|+...||.++++
T Consensus 6 f~FFl~aGv~~~~c~rY----A~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 6 FEFFLNCGVDVSNCQRY----TINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHHHHTTCCHHHHHHH----HHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHH----HHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 55666666664433222 1111 123344444444 466777776666666653
No 28
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.96 E-value=24 Score=25.86 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=6.1
Q ss_pred HHHHHHcCCCC
Q 007621 441 TEFLLRLGYVE 451 (595)
Q Consensus 441 ~~fl~~lGf~~ 451 (595)
++-|.++||++
T Consensus 13 lq~L~eMGFd~ 23 (54)
T 2cos_A 13 LQELVNAGCDQ 23 (54)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHcCCCH
Confidence 45555566654
No 29
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=46.45 E-value=26 Score=29.77 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=35.4
Q ss_pred CChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH-cCCCh
Q 007621 276 YNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK-LGLKM 331 (595)
Q Consensus 276 ~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~-lGl~~ 331 (595)
..|++ |.+.+|+++.+|..+-..+|.-+ .+.....+.-|.. .|-..
T Consensus 26 ~~WK~------~aRkLGLse~~Id~Ie~~~~r~l----~Eq~yqmLr~W~~~~G~~~ 72 (112)
T 1ich_A 26 LRWKE------FVKRLGLSDHEIDRLELQNGRCL----REAQYSMLATWRRRTPRRE 72 (112)
T ss_dssp TTHHH------HHHHHTCCHHHHHHHHHHCCSCH----HHHHHHHHHHHHHHSCCSS
T ss_pred HHHHH------HHHHcCCCHHHHHHHHHHCcCCh----HHHHHHHHHHHHHhcCCCC
Confidence 45765 78899999999999999999843 4577777777775 46443
No 30
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.40 E-value=11 Score=27.68 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=31.8
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHhCCCh
Q 007621 474 FDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPL 520 (595)
Q Consensus 474 ~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~~~ 520 (595)
++-|.++||+.+-+...+++- +...|++.++||.+ |+++.
T Consensus 13 lq~L~eMGFd~erae~Alk~T------g~~Gle~AmewL~k-~~~~~ 52 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQT------GSRSIEAALEYISK-MSGPS 52 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH------TSCCHHHHHHHHHH-HSCSC
T ss_pred HHHHHHcCCCHHHHHHHHHHh------CcccHHHHHHHHHH-hcCCC
Confidence 677889999999888777642 23569999999986 88874
No 31
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=45.55 E-value=1.1e+02 Score=26.13 Aligned_cols=41 Identities=7% Similarity=0.229 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH
Q 007621 278 WDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK 326 (595)
Q Consensus 278 ~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~ 326 (595)
|..-.+.++-|.++||++++..+++... ..++...++||.+
T Consensus 75 ~~~~e~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 75 NQPPEEIVAIITSMGFQRNQAIQALRAT--------NNNLERALDWIFS 115 (126)
T ss_dssp CCCCHHHHHHHHHHTSCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred cCcCHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 4334567888999999999999988863 2367778888876
No 32
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=45.19 E-value=15 Score=26.59 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=10.8
Q ss_pred chHHHHHHHHHcCC
Q 007621 436 KDVEKTEFLLRLGY 449 (595)
Q Consensus 436 ~~~~k~~fl~~lGf 449 (595)
...++++.|.+|||
T Consensus 11 ~~~~~l~~L~~MGF 24 (52)
T 2jy5_A 11 RFQQQLEQLSAMGF 24 (52)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 35678888888888
No 33
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.96 E-value=28 Score=24.73 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH
Q 007621 282 SETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK 326 (595)
Q Consensus 282 ~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~ 326 (595)
.+.++-|.++||++++...++++.- .++...++||.+
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTT--------SCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 3567777888999988888888642 256667777765
No 34
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.97 E-value=37 Score=27.23 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHhC
Q 007621 472 ERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLC 517 (595)
Q Consensus 472 ~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg 517 (595)
++++-|++|||+++++..+++.+- .+++.-++||.+..|
T Consensus 31 e~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 31 ESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 445555666666666665555322 235666666666555
No 35
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=42.05 E-value=28 Score=24.57 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Q 007621 469 QLQERFDCLVQAGLDSNVVRNIVK 492 (595)
Q Consensus 469 ~l~~r~~~L~~~G~s~~ev~~mi~ 492 (595)
.+...+..|.++|++.+++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 466777788888888888876654
No 36
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.69 E-value=27 Score=24.48 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=9.4
Q ss_pred HHHHHHhCCCHHHHHHHHHh
Q 007621 474 FDCLVQAGLDSNVVRNIVKR 493 (595)
Q Consensus 474 ~~~L~~~G~s~~ev~~mi~~ 493 (595)
++-|.++||+.+++...++.
T Consensus 13 v~~L~~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 13 LQQLMDMGFTREHAMEALLN 32 (47)
T ss_dssp HHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 34444455555544444444
No 37
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=40.98 E-value=40 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHH
Q 007621 283 ETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLL 325 (595)
Q Consensus 283 ~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~ 325 (595)
+.++-|.++||++++..+++..+ ..++...++||.
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~L~ 40 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC--------NWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CcCHHHHHHHHH
Confidence 46777888999988888887763 235666667664
No 38
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=39.56 E-value=19 Score=24.66 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=13.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHh
Q 007621 472 ERFDCLVQAGLDSNVVRNIVKR 493 (595)
Q Consensus 472 ~r~~~L~~~G~s~~ev~~mi~~ 493 (595)
+.++-|.++||+++++...++.
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEK 27 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3455566666666666655554
No 39
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=39.40 E-value=1.1e+02 Score=27.45 Aligned_cols=22 Identities=14% Similarity=-0.064 Sum_probs=15.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHhC
Q 007621 284 TLDFLYKIGYNEVQLLNLFKTN 305 (595)
Q Consensus 284 ~l~~l~~lG~s~~~I~~lv~~~ 305 (595)
..+-|+.-|++.+.|..++...
T Consensus 87 I~~eL~~KGI~~~~I~~al~~~ 108 (162)
T 3dfg_A 87 IRAELGTHGLDSDAVSAAMATF 108 (162)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHhC
Confidence 4455667788877777777664
No 40
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=38.56 E-value=39 Score=26.35 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=30.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH
Q 007621 281 VSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK 326 (595)
Q Consensus 281 ~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~ 326 (595)
..+.|+-|.++||+++++..+++++ ..++...++||.+
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 3567888899999999999998873 3478888888875
No 41
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=38.22 E-value=41 Score=24.22 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=21.5
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHhCCCccccCchhhHHHHHHHHH
Q 007621 283 ETLDFLYKIGY-NEVQLLNLFKTNPALVFEGSGQKVYVLFGRLL 325 (595)
Q Consensus 283 ~~l~~l~~lG~-s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~ 325 (595)
+.++-|.++|| +++...+++... ..++...+++|.
T Consensus 14 ~~l~~L~~MGF~~~~~~~~AL~~t--------~gn~e~A~e~L~ 49 (52)
T 2jy5_A 14 QQLEQLSAMGFLNREANLQALIAT--------GGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 46677777788 666666666542 235666666653
No 42
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=36.89 E-value=38 Score=22.45 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=10.5
Q ss_pred HHHHHHHhCCCHHHHHHHHH
Q 007621 473 RFDCLVQAGLDSNVVRNIVK 492 (595)
Q Consensus 473 r~~~L~~~G~s~~ev~~mi~ 492 (595)
.++-|.++||+.+++...++
T Consensus 7 ~i~~L~~mGf~~~~a~~AL~ 26 (40)
T 1z96_A 7 KIAQLVSMGFDPLEAAQALD 26 (40)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 44455555555555554444
No 43
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=36.44 E-value=30 Score=25.10 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=13.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHH
Q 007621 471 QERFDCLVQAGLDSNVVRNIVK 492 (595)
Q Consensus 471 ~~r~~~L~~~G~s~~ev~~mi~ 492 (595)
.+.++-|.++|++++++.+.+.
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 3556666666666666665544
No 44
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.40 E-value=55 Score=24.64 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc
Q 007621 283 ETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL 327 (595)
Q Consensus 283 ~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l 327 (595)
+.|+-|.++||++++..+++..+ ..++...++||..-
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 46778888999999998888774 23677888888753
No 45
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=36.34 E-value=33 Score=25.92 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=29.2
Q ss_pred HHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCccccccc
Q 007621 221 ENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYL 270 (595)
Q Consensus 221 ~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l 270 (595)
+.+|+|...|.+++...+.-...+++ ....+.+.++++|..|+...+.+
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~e-t~~rI~~aa~~lgY~pn~~a~~l 56 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDK-TVEKVMAVVREHNYHPNAVAAGL 56 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTH-HHHHHHHHHHHHTCCCC------
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHHHhCCCccHHHHHH
Confidence 56799999999998877621112333 24556667778888887655433
No 46
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.00 E-value=53 Score=24.59 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHh
Q 007621 472 ERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYL 516 (595)
Q Consensus 472 ~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~m 516 (595)
+.++.|.++||+++++..+++.+-. +++.-++||.+.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 11 DCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 3455556666666666666665421 3555566666543
No 47
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=34.92 E-value=76 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=17.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHh
Q 007621 280 QVSETLDFLYKIGYNEVQLLNLFKT 304 (595)
Q Consensus 280 ~~~~~l~~l~~lG~s~~~I~~lv~~ 304 (595)
.+.+.|+-|-++||+++++.+++..
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4445677777788888887777765
No 48
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.64 E-value=42 Score=24.44 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHH
Q 007621 471 QERFDCLVQAGLDSNVVRNIVK 492 (595)
Q Consensus 471 ~~r~~~L~~~G~s~~ev~~mi~ 492 (595)
..+++-|.++||+++++.+.+.
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~ 31 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALV 31 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 3456666777777777666544
No 49
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.49 E-value=65 Score=23.58 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=23.2
Q ss_pred CCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHHH
Q 007621 434 PSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQ 479 (595)
Q Consensus 434 ~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~~ 479 (595)
++....+++.|.+|||.... ....++...+-+++.-++-|..
T Consensus 6 ee~~a~~L~~L~eMGF~D~~----~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDRQ----LNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCHH----HHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcCCCcHH----HHHHHHHHcCCCHHHHHHHHHh
Confidence 45566788889999995332 2223333333345555555543
No 50
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=33.37 E-value=48 Score=24.29 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHH
Q 007621 468 DQLQERFDCLVQAGLDSNVVRNIVK 492 (595)
Q Consensus 468 ~~l~~r~~~L~~~G~s~~ev~~mi~ 492 (595)
+...+.+..|.++|++.+++.+.+.
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHH
Confidence 3456677777888888887776654
No 51
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=32.76 E-value=27 Score=27.14 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=31.7
Q ss_pred HHHHHhhcCCCcchHHHHHHhcccccccC--chhhHHHH--HHHHHCCCChHHHHHHH
Q 007621 181 NFHVLCDYGIPRSKMGKMYVEATEIFRHD--RGVLASKL--WAYENLGLSKNTVIKLV 234 (595)
Q Consensus 181 ~~~~L~~~g~s~~~i~~~~k~~p~ll~~~--~~~l~~~l--~~L~~lGls~~~I~klv 234 (595)
-++|+.+.|++.+...+ +...|..+ .+.+-|-+ +.|+++|+..-||.++.
T Consensus 5 Wf~FFl~aGv~~~~c~r----YA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQR----YTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHHHHHTTCCHHHHHH----HHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHH----HHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHH
Confidence 46788888887665542 23344433 34444433 58899999888877764
No 52
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.82 E-value=41 Score=24.51 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=12.6
Q ss_pred chHHHHHHHHHcCCCC
Q 007621 436 KDVEKTEFLLRLGYVE 451 (595)
Q Consensus 436 ~~~~k~~fl~~lGf~~ 451 (595)
.+.++++.|.+|||..
T Consensus 8 ~~~~~l~~L~~MGF~d 23 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLN 23 (54)
T ss_dssp SSHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHcCCCc
Confidence 4577888999999964
No 53
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.42 E-value=71 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc
Q 007621 282 SETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL 327 (595)
Q Consensus 282 ~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l 327 (595)
.+.|+-|.++||+++++.++++.. ..++...++||.+.
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~sh 67 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 457888999999999999999874 23688899999874
No 54
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.12 E-value=41 Score=25.35 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHH
Q 007621 472 ERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNY 515 (595)
Q Consensus 472 ~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~ 515 (595)
+.++.|.++||+.+++..+++.+= .+++.-++||.+.
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 456667777888877777666541 2466777887764
No 55
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.99 E-value=32 Score=26.87 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHH
Q 007621 470 LQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKN 514 (595)
Q Consensus 470 l~~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~ 514 (595)
.+++++-|.+|||+++++..+++++ -.+++.-++||.+
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~-------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAA-------DDDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 4556666777777777777766642 1245666677765
No 56
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.31 E-value=80 Score=24.46 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc
Q 007621 283 ETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL 327 (595)
Q Consensus 283 ~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l 327 (595)
+.++-|.++||++++..++++.. ..++...++||.+.
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 31 SSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 46788888999999999988874 23677888888764
No 57
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.62 E-value=56 Score=25.36 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHH
Q 007621 471 QERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNY 515 (595)
Q Consensus 471 ~~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~ 515 (595)
.++++.|.++||+.+++..+++.+= .+++.-++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 3456777888888888887777532 2567777887764
No 58
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.30 E-value=86 Score=24.35 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=18.2
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHh
Q 007621 474 FDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYL 516 (595)
Q Consensus 474 ~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~m 516 (595)
++-|.+|||+.+.+.++++.+-. ..++.-++||.+.+
T Consensus 13 v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 13 IIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCC
Confidence 44455555555555555443210 13555566666543
No 59
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.79 E-value=64 Score=24.31 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=8.6
Q ss_pred HHHHHhCCCHHHHHHHHH
Q 007621 475 DCLVQAGLDSNVVRNIVK 492 (595)
Q Consensus 475 ~~L~~~G~s~~ev~~mi~ 492 (595)
+-|.++||+.+++..+++
T Consensus 24 ~~L~~MGF~~~~a~~AL~ 41 (64)
T 2cpw_A 24 DVLLSMGFPRARAQKALA 41 (64)
T ss_dssp HHHHHHTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 344445555555444444
No 60
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.36 E-value=59 Score=24.49 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH
Q 007621 283 ETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK 326 (595)
Q Consensus 283 ~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~ 326 (595)
+.|+-+.++||++++..+++++. .+++.+.++++-+
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLFS 56 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 36777888999999999999884 3477788887765
No 61
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.92 E-value=74 Score=23.76 Aligned_cols=36 Identities=8% Similarity=0.246 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH
Q 007621 283 ETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK 326 (595)
Q Consensus 283 ~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~ 326 (595)
+.++-|.++||++++..+++++.- .++...++||..
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~A~e~L~~ 46 (63)
T 2dak_A 11 DCVTTIVSMGFSRDQALKALRATN--------NSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT--------SCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 467778889999999999888752 246677777764
No 62
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.85 E-value=1.2e+02 Score=25.19 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=30.5
Q ss_pred cChhHHHHHHHHHHHh-CCCHHHHHHHHHhCCcccccChHHHHHHHHHHHH
Q 007621 465 GRGDQLQERFDCLVQA-GLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKN 514 (595)
Q Consensus 465 ~~~~~l~~r~~~L~~~-G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~ 514 (595)
+....++++|+.|.++ |++.++++.++..+= -.+..-+++|.+
T Consensus 34 ~~d~d~eekVk~L~EmtG~seeeAr~AL~~~n-------gDl~~AI~~Lle 77 (104)
T 1wj7_A 34 HNDADFEEKVKQLIDITGKNQDECVIALHDCN-------GDVNRAINVLLE 77 (104)
T ss_dssp SCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHhhCCCHHHHHHHHHHcC-------CCHHHHHHHHHh
Confidence 3334788999999977 999999987766432 245556777765
No 63
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.41 E-value=1.6e+02 Score=24.81 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=31.6
Q ss_pred CChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc
Q 007621 276 YNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL 327 (595)
Q Consensus 276 ~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l 327 (595)
..|+. +-+.+|+++.+|..+-..+|. +..+.+...+..+...
T Consensus 36 ~~Wk~------LAR~LGlse~dId~I~~~~p~----~l~eq~~qmL~~W~~r 77 (114)
T 2of5_A 36 PEWEP------MVLSLGLSQTDIYRCKANHPH----NVQSQVVEAFIRWRQR 77 (114)
T ss_dssp STHHH------HHHTTTCCHHHHHHHHHHCSS----CHHHHHHHHHHHHHHH
T ss_pred hhHHH------HHHHcCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHH
Confidence 35776 445799999999999999995 4556777777766643
No 64
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.17 E-value=1.5e+02 Score=26.77 Aligned_cols=74 Identities=12% Similarity=-0.011 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHHHHh
Q 007621 284 TLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEI 363 (595)
Q Consensus 284 ~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~ 363 (595)
..+-|+.-|++.+.|..++...+ .++........+.+. +...+.. +..+.-.-.+.||..-
T Consensus 89 I~~eL~~KGI~~~~I~~al~~~~------~~de~e~a~~l~~Kk----------~~~~~~~---~~~~~~~K~~~~L~rr 149 (177)
T 3e3v_A 89 IKLNLSKKGIDDNIAEDALILYT------DKLQVEKGVTLAEKL----------ANRYSHD---SYRNKQNKIKQSLLTK 149 (177)
T ss_dssp HHHHHHTTTCCHHHHHHHHTTSC------HHHHHHHHHHHHHHH----------HHHTTTS---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHhCC------chhHHHHHHHHHHHH----------HhhccCC---ChHHHHHHHHHHHHHC
Confidence 45567778888888888886432 233333333333321 0111110 1111122335688888
Q ss_pred CCChhhHHHHHHh
Q 007621 364 GMGMKDISNMVLM 376 (595)
Q Consensus 364 Gl~~~~I~~il~~ 376 (595)
|++.+.|..++..
T Consensus 150 GF~~~~I~~vl~~ 162 (177)
T 3e3v_A 150 GFSYDIIDTIIQE 162 (177)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8888888887764
No 65
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.84 E-value=1.7e+02 Score=24.60 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=31.0
Q ss_pred ChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc
Q 007621 277 NWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL 327 (595)
Q Consensus 277 ~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l 327 (595)
.|+. +-+.+|+++.+|..+-..+|. +..+.+...+..+...
T Consensus 37 ~Wk~------LAR~LGlse~dId~I~~~~p~----dl~eq~~qmL~~W~~r 77 (115)
T 2o71_A 37 EWEP------MVLSLGLSQTDIYRCKANHPH----NVQSQVVEAFIRWRQR 77 (115)
T ss_dssp THHH------HHHHTTCCHHHHHHHHHHCTT----CHHHHHHHHHHHHHHH
T ss_pred hHHH------HHHHcCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHH
Confidence 4776 445799999999999999995 4556777777766643
No 66
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=24.66 E-value=54 Score=22.96 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=10.4
Q ss_pred hHHHHHHHHHcCCC
Q 007621 437 DVEKTEFLLRLGYV 450 (595)
Q Consensus 437 ~~~k~~fl~~lGf~ 450 (595)
..++++-|.+|||.
T Consensus 7 ~~~~i~~L~~MGF~ 20 (46)
T 2bwb_A 7 YEHQLRQLNDMGFF 20 (46)
T ss_dssp THHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 45677888888884
No 67
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=24.19 E-value=2.1e+02 Score=22.87 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=31.5
Q ss_pred HHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH-cCCC
Q 007621 285 LDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK-LGLK 330 (595)
Q Consensus 285 l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~-lGl~ 330 (595)
-+|-+.+|+|+.+|..+-..+|.=+ .+.....+.-+.. .|-.
T Consensus 16 K~~~R~LGlse~~Id~I~~~~~~d~----~Eq~~qmL~~W~~~~g~~ 58 (86)
T 3oq9_A 16 KKFARENNIKEGKIDEIMHDSIQDT----AEQKVQLLLCWYQSHGKS 58 (86)
T ss_dssp HHHHHTTTSCHHHHHHHHHTCTTCC----TTHHHHHHHHHHHHSCSS
T ss_pred HHHHHHcCCCHhHHHHHHHhCCCCh----HHHHHHHHHHHHHHhCcc
Confidence 3477899999999999999999844 3466666666664 4644
No 68
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=24.10 E-value=57 Score=24.70 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=27.4
Q ss_pred HHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCccccc
Q 007621 221 ENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGR 268 (595)
Q Consensus 221 ~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~ 268 (595)
+..|++...|..++...|.+ +++ .-..+.+.++++|..|+...+
T Consensus 17 ~~aGVS~sTVSr~ln~~~~v---s~~-t~~rV~~~a~~lgY~pn~~a~ 60 (67)
T 2l8n_A 17 LKAKVSTATVSRALMNPDKV---SQA-TRNRVEKAAREVGYLPQPMGR 60 (67)
T ss_dssp HHTTCCHHHHHHTTTCCCCS---CHH-HHHHHHHHHHHHCCCC-----
T ss_pred HHHCCCHHHHHHHHcCCCCC---CHH-HHHHHHHHHHHhCCCccHHHH
Confidence 56899999999988766643 333 245566777778887765443
No 69
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.80 E-value=1.1e+02 Score=24.28 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHh
Q 007621 473 RFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYL 516 (595)
Q Consensus 473 r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~m 516 (595)
.++-|.+|||+.+.+..+++.+ -.+++.-++||.+.+
T Consensus 32 ~i~~L~~MGF~~~~a~~AL~~t-------~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 32 ALRQLTEMGFPENRATKALQLN-------HMSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHHCC
Confidence 3445556666666665555543 123555566666543
No 70
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.71 E-value=73 Score=24.88 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=11.3
Q ss_pred CchHHHHHHHHHcCCC
Q 007621 435 SKDVEKTEFLLRLGYV 450 (595)
Q Consensus 435 ~~~~~k~~fl~~lGf~ 450 (595)
+.+.++++-|.+|||.
T Consensus 27 ~~ye~qi~qL~eMGF~ 42 (74)
T 1vej_A 27 GRYQQELEELKALGFA 42 (74)
T ss_dssp TTSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4456777888888873
No 71
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.66 E-value=31 Score=25.98 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHh
Q 007621 469 QLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYL 516 (595)
Q Consensus 469 ~l~~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~m 516 (595)
.=++.++-+..+||+++++...++... .++++-.|||-..+
T Consensus 18 se~e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 18 SERQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCC
Confidence 334557777788888888877776543 45677777776654
No 72
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=23.57 E-value=1.4e+02 Score=22.52 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=32.3
Q ss_pred HHHHHHHHH-HhCCCHHHHHHHHHhCCccc--------ccChHHHHHHHHHHHHHhCCChHHHhh
Q 007621 470 LQERFDCLV-QAGLDSNVVRNIVKRAPMVL--------NQSKDVLEKKIDYLKNYLCYPLESVVA 525 (595)
Q Consensus 470 l~~r~~~L~-~~G~s~~ev~~mi~~~P~iL--------~~s~e~L~~k~~fL~~~mg~~~~~l~~ 525 (595)
+..++..++ ..|++.+++...+--.+.-+ ..+.+.+..-++.|...+|++++++..
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~l~~ 75 (84)
T 2ef8_A 11 LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLK 75 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHHHHc
Confidence 444555555 55666666655553333222 123455666667777778999988764
No 73
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.51 E-value=62 Score=25.81 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=25.7
Q ss_pred hHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHHH
Q 007621 437 DVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQ 479 (595)
Q Consensus 437 ~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~~ 479 (595)
-.++++-|.+|||.++ .|.++++.....++.-++||.+
T Consensus 29 ~e~~i~~L~~MGF~~~-----~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 29 DEAALRQLTEMGFPEN-----RATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp CHHHHHHHHHHTCCHH-----HHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHH-----HHHHHHHHhCCCHHHHHHHHHH
Confidence 4678899999999873 3333343333467777888874
No 74
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=22.36 E-value=2.4e+02 Score=23.89 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=31.1
Q ss_pred HHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc-C
Q 007621 286 DFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL-G 328 (595)
Q Consensus 286 ~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l-G 328 (595)
+|-+.+|+++.+|..+-..+|. +..+.....+.-|... |
T Consensus 25 ~laR~LGlse~~Id~I~~d~~~----d~~Eq~~qlLr~W~~~~G 64 (115)
T 3ezq_A 25 GFVRKNGVNEAKIDEIKNDNVQ----DTAEQKVQLLRNWHQLHG 64 (115)
T ss_dssp HHHHHTTCCHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCCHhhHHHHHHcCCC----ChHHHHHHHHHHHHHHhC
Confidence 4777999999999999999998 4556777777777654 5
No 75
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.87 E-value=4.9e+02 Score=24.24 Aligned_cols=108 Identities=12% Similarity=-0.024 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCCCcccc-cccCCC-CC-CChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHH
Q 007621 249 FVKVLEKLKELGFKNDWIG-RYLPGK-GS-YNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLL 325 (595)
Q Consensus 249 l~~~v~~L~~lGv~~~~~~-~~l~~~-~~-~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~ 325 (595)
+..++++|.+.|+-.+.-+ ...+.. .. ..|. .....+-|+.-|++.+.|..++...+ .++........+.
T Consensus 95 i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G-~~~I~~eL~~KGI~~~~I~~al~~~~------~~~e~e~a~~l~~ 167 (221)
T 3d5l_A 95 VEPILKKLRGQQLIDDHAYAASYVRTMINTDLKG-PGIIRQHLRQKGIGESDIDDALTQFT------PEVQAELAKKLAL 167 (221)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHTTCCHHHHHHHGGGCC------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccc-HHHHHHHHHHcCCCHHHHHHHHHhCC------HHHHHHHHHHHHH
Confidence 5566666667665444322 111111 11 1232 22345677788999888888877642 2222322222222
Q ss_pred HcCCChhHHHHHHhhCCceeeccccccHHHHHHHHHHhCCChhhHHHHHHh
Q 007621 326 KLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLM 376 (595)
Q Consensus 326 ~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~ 376 (595)
+. +...+. .+..+.-.-.+.||..-|++.+.|..++..
T Consensus 168 Kk----------~~~~~~---~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~ 205 (221)
T 3d5l_A 168 KL----------FRRYRN---QPERRREQKVQQGLTTKGFSSSVYEMIKDE 205 (221)
T ss_dssp HH----------HHHTTT---SCHHHHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HH----------HhhccC---CChHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 21 111111 111122334557888888888888777653
No 76
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.28 E-value=93 Score=23.80 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=19.8
Q ss_pred hHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHHH
Q 007621 437 DVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQ 479 (595)
Q Consensus 437 ~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~~ 479 (595)
+..+++-|.+|||.... .-.+||++ ..-.++.-+++|.+
T Consensus 19 y~~ql~qL~~MGF~d~~-an~~AL~a---t~Gnve~Ave~L~~ 57 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYN-ANLQALIA---TDGDTNAAIYKLKS 57 (67)
T ss_dssp THHHHHHHHHHTCCCHH-HHHHHHHH---TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHH-HHHHHHHH---cCCCHHHHHHHHHh
Confidence 45677777777774322 11233322 22345555566553
No 77
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.25 E-value=3.6e+02 Score=24.23 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=31.0
Q ss_pred hhhHHHHHhhcC-CCcchHHHHHHhccccc-ccCchhhHHHHHHHHHCCCChHHHHHHHHh
Q 007621 178 LLDNFHVLCDYG-IPRSKMGKMYVEATEIF-RHDRGVLASKLWAYENLGLSKNTVIKLVSC 236 (595)
Q Consensus 178 l~p~~~~L~~~g-~s~~~i~~~~k~~p~ll-~~~~~~l~~~l~~L~~lGls~~~I~klv~~ 236 (595)
+...++.|...| +++......+.+.-.-. .+++..| ..-|+.-|++...|...+..
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I---~~eL~~KGI~~~~I~~al~~ 109 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVI---KLNLSKKGIDDNIAEDALIL 109 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHTTTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHH---HHHHHHcCCCHHHHHHHHHh
Confidence 444566777766 46666666655432211 1232222 23567778888877777653
No 78
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.05 E-value=94 Score=22.62 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=26.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc
Q 007621 280 QVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL 327 (595)
Q Consensus 280 ~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l 327 (595)
...+.|+-|-++||+++++.+++... .+++.-.-.+|.++
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a--------~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIA--------HNNIEMAKNILREF 47 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHT--------TTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh--------cCCHHHHHHHHHHh
Confidence 34456788888889888888887653 33555555555543
No 79
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.76 E-value=2e+02 Score=21.18 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=9.5
Q ss_pred hHHHHHHHHHcCCC
Q 007621 437 DVEKTEFLLRLGYV 450 (595)
Q Consensus 437 ~~~k~~fl~~lGf~ 450 (595)
+.++++-|.+|||.
T Consensus 17 ~~~qi~~L~~MGF~ 30 (58)
T 1wr1_B 17 YEHQLRQLNDMGFF 30 (58)
T ss_dssp THHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 45677777777773
Done!