Query 007621
Match_columns 595
No_of_seqs 346 out of 1223
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 06:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007621.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007621hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 71.0 1.5 0.00011 28.8 2.9 26 469-494 3-28 (41)
2 d1rw1a_ c.47.1.12 (A:) Hypothe 47.2 9.7 0.0007 30.2 4.6 79 249-349 13-93 (114)
3 d1oqya1 a.5.2.1 (A:160-200) DN 45.6 8.8 0.00064 24.9 3.2 25 281-305 4-28 (41)
4 d1f5ta2 a.76.1.1 (A:1065-1121) 40.3 18 0.0013 24.9 4.5 39 85-123 11-54 (57)
5 d2isya2 a.76.1.1 (A:65-140) Ir 39.8 19 0.0014 26.3 4.9 42 85-126 11-57 (76)
6 d2hsga1 a.35.1.5 (A:2-58) Gluc 38.4 14 0.001 25.7 3.6 43 221-267 9-51 (57)
7 d1uxda_ a.35.1.5 (A:) Fructose 38.2 15 0.0011 25.7 3.7 49 221-270 8-56 (59)
8 d1wiva_ a.5.2.1 (A:) Ubiquitin 37.2 22 0.0016 25.9 4.7 36 472-514 31-66 (73)
9 d1vg5a_ a.5.2.1 (A:) Rhomboid 33.5 11 0.00078 27.7 2.4 14 438-451 30-43 (73)
10 d1wjia_ a.5.2.1 (A:) Tudor dom 32.7 16 0.0011 25.8 3.2 35 474-515 13-47 (63)
11 d1vg5a_ a.5.2.1 (A:) Rhomboid 32.4 26 0.0019 25.4 4.5 38 282-327 30-67 (73)
12 d2daha1 a.5.2.1 (A:8-48) Ubiqu 30.5 20 0.0014 23.1 3.0 37 438-478 3-39 (41)
13 d1wiva_ a.5.2.1 (A:) Ubiquitin 29.8 34 0.0025 24.7 4.8 37 283-327 31-67 (73)
14 d1qpza1 a.35.1.5 (A:2-58) Puri 29.0 19 0.0014 25.0 2.9 43 221-267 8-50 (57)
15 d1icha_ a.77.1.2 (A:) Tumor ne 28.7 36 0.0026 25.0 5.0 45 276-330 14-59 (87)
16 d1jmxa1 a.3.1.7 (A:2-85) Quino 28.5 11 0.00078 28.5 1.6 22 86-107 53-74 (84)
17 d1wgna_ a.5.2.1 (A:) Ubiquitin 28.4 13 0.00092 26.4 1.9 36 472-514 21-56 (63)
18 d2g3qa1 a.5.2.1 (A:1339-1381) 28.3 20 0.0015 23.2 2.7 24 284-307 7-30 (43)
19 d1efaa1 a.35.1.5 (A:2-60) Lac 28.3 26 0.0019 24.4 3.6 43 221-267 10-52 (59)
20 d1pbya1 a.3.1.7 (A:1-85) Quino 27.5 13 0.00094 28.0 2.0 24 85-108 52-75 (85)
21 d1wjia_ a.5.2.1 (A:) Tudor dom 25.5 51 0.0037 23.0 4.9 37 283-327 11-47 (63)
22 d2crna1 a.5.2.1 (A:8-58) Suppr 25.3 19 0.0014 24.3 2.3 33 441-478 6-39 (51)
23 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 24.2 38 0.0028 22.7 3.8 35 284-325 15-49 (51)
24 d1wgna_ a.5.2.1 (A:) Ubiquitin 24.0 21 0.0015 25.2 2.5 37 438-493 20-56 (63)
25 d1uxda_ a.35.1.5 (A:) Fructose 23.6 66 0.0048 22.0 5.2 44 393-453 7-51 (59)
26 d2pfxa1 a.152.1.3 (A:1-190) Un 22.7 1.2E+02 0.0086 25.4 8.0 139 315-491 20-161 (190)
27 d2csba4 a.60.2.4 (A:465-519) T 21.8 51 0.0037 21.3 3.8 48 182-233 3-51 (55)
28 d1j9ba_ c.47.1.12 (A:) Arsenat 21.2 30 0.0022 28.2 3.3 37 249-305 13-49 (138)
29 d1a9xa1 a.92.1.1 (A:403-555) C 20.3 49 0.0035 27.5 4.5 61 222-303 42-105 (153)
30 d1ddfa_ a.77.1.2 (A:) Fas {Hum 20.1 1.8E+02 0.013 22.7 8.1 64 287-374 32-98 (127)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.03 E-value=1.5 Score=28.81 Aligned_cols=26 Identities=8% Similarity=0.230 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhC
Q 007621 469 QLQERFDCLVQAGLDSNVVRNIVKRA 494 (595)
Q Consensus 469 ~l~~r~~~L~~~G~s~~ev~~mi~~~ 494 (595)
+.++.++-|.++||+++++...++.+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555666666666666666666543
No 2
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=47.18 E-value=9.7 Score=30.16 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCC--ccccCchhhHHHHHHHHHH
Q 007621 249 FVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPA--LVFEGSGQKVYVLFGRLLK 326 (595)
Q Consensus 249 l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~--iL~~~~e~~l~~~v~fL~~ 326 (595)
-+.++++|++-|++...+ + +.+-+++.+++..++.+.+. ++. ..++....+.-...
T Consensus 13 srka~~~L~~~~i~~~~i-------------------d-y~k~pls~~eL~~ll~~~g~~~l~~--~r~~~~k~l~~~~~ 70 (114)
T d1rw1a_ 13 MKKARTWLDEHKVAYDFH-------------------D-YKAVGIDREHLRRWCAEHGWQTVLN--RAGTTFRKLDEAQK 70 (114)
T ss_dssp HHHHHHHHHHTTCCEEEE-------------------E-HHHHCCCHHHHHHHHHHHCHHHHBC--TTSHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCeEEE-------------------E-ccccCCCHHHHHHHHHhcchHHHhh--hhhHHHHHhhhhhh
Confidence 566778888877766531 1 22357788888877776542 221 11122222222222
Q ss_pred cCCChhHHHHHHhhCCceeeccc
Q 007621 327 LGLKMNEVYSLFSQNPQILSSKF 349 (595)
Q Consensus 327 lGl~~~~i~~~I~~~P~lL~~sl 349 (595)
..++.+++..++..+|.++.+.+
T Consensus 71 ~~ls~~e~i~~i~~~P~LikRPI 93 (114)
T d1rw1a_ 71 ADLDEAKAIELMLAQPSMIKRPV 93 (114)
T ss_dssp TTCCHHHHHHHHHHCGGGBCSCE
T ss_pred ccccHHHHHHHHHhCcceEeCCE
Confidence 35677777777777777666554
No 3
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.57 E-value=8.8 Score=24.86 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=18.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHhC
Q 007621 281 VSETLDFLYKIGYNEVQLLNLFKTN 305 (595)
Q Consensus 281 ~~~~l~~l~~lG~s~~~I~~lv~~~ 305 (595)
..+.|+-|.++||++++..+++++.
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 4 YETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3456777777888888888888775
No 4
>d1f5ta2 a.76.1.1 (A:1065-1121) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=40.34 E-value=18 Score=24.87 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHhcc-----CchHHHHHHh
Q 007621 85 RTEAQEVLFDYLHSTRSLGYMDAEHISKN-----SPDFVLNLLS 123 (595)
Q Consensus 85 ~~~a~~~~~~YL~~tcgLs~~~A~~~Sk~-----sP~~v~~lL~ 123 (595)
....+..++.||+.-.|++.++|...+-+ ||+.+..+-+
T Consensus 11 i~rrHrlle~fL~~~lgv~~~~a~~~A~~iEH~ls~~~~~~l~~ 54 (57)
T d1f5ta2 11 VMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVK 54 (57)
T ss_dssp HHHHHHHHHHHHHTTSCCCGGGHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 55678899999999999999999887765 7887776544
No 5
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=39.76 E-value=19 Score=26.31 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHhcc-----CchHHHHHHhcCC
Q 007621 85 RTEAQEVLFDYLHSTRSLGYMDAEHISKN-----SPDFVLNLLSKID 126 (595)
Q Consensus 85 ~~~a~~~~~~YL~~tcgLs~~~A~~~Sk~-----sP~~v~~lL~~~~ 126 (595)
....+..++.||+...|++.++|..-+-+ ||+.+..+-.-+|
T Consensus 11 i~rrHrlle~fL~~~lgv~~~~a~~~A~~iEH~is~e~~~~L~~~l~ 57 (76)
T d2isya2 11 VMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLN 57 (76)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCHHHHHHHHHHhC
Confidence 55678899999999999999999887765 8988888777666
No 6
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=38.36 E-value=14 Score=25.67 Aligned_cols=43 Identities=26% Similarity=0.413 Sum_probs=30.5
Q ss_pred HHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccc
Q 007621 221 ENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIG 267 (595)
Q Consensus 221 ~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~ 267 (595)
+..|+|...+.+.+...|.+ +.+ .-+.+.+.++++|..|+...
T Consensus 9 ~~agvS~~TVSr~Ln~~~~V---s~~-tr~rV~~aa~~lgY~pn~~A 51 (57)
T d2hsga1 9 REASVSMATVSRVVNGNPNV---KPS-TRKKVLETIERLGYRPNAVA 51 (57)
T ss_dssp HHTTSCHHHHHHHHTTCTTS---CHH-HHHHHHHHHHHHTCCSCHHH
T ss_pred HHHCcCHHHHHHHhCCCCcC---CHH-HHHHHHHHHHHHCcCCCHHH
Confidence 56899999999999888764 333 24455566777777776544
No 7
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.21 E-value=15 Score=25.70 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=35.3
Q ss_pred HHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCccccccc
Q 007621 221 ENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYL 270 (595)
Q Consensus 221 ~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l 270 (595)
+.+|+|...|.+++...|.-...+++ .-+.+.+.++++|..|+...+.+
T Consensus 8 ~~agvS~sTVSrvLn~~~~~~~vs~~-tr~rV~~~a~~lgY~pn~~Ar~L 56 (59)
T d1uxda_ 8 RLAGVSRTTASYVINGKAKQYRVSDK-TVEKVMAVVREHNYHPNAVAAGL 56 (59)
T ss_dssp HHHTSCTTHHHHHHHTCGGGTTCTTT-THHHHHHHHHHHTCCCCSCCSCS
T ss_pred HHHCcCHHHHHHHHcCCCCcCcCCHH-HHHHHHHHHHHHCCCcCHHHHHh
Confidence 56799999999999887763333433 35667788888999888765443
No 8
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=37.20 E-value=22 Score=25.89 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHH
Q 007621 472 ERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKN 514 (595)
Q Consensus 472 ~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~ 514 (595)
+.+.-|.++||+++++...++.+ -.+++.-++||.+
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~~-------~~n~e~Av~~Lls 66 (73)
T d1wiva_ 31 SSVDTLLSFGFAEDVARKALKAS-------GGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHc-------CCCHHHHHHHHHc
Confidence 34555556666666666666554 1245556666654
No 9
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.46 E-value=11 Score=27.67 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=9.2
Q ss_pred HHHHHHHHHcCCCC
Q 007621 438 VEKTEFLLRLGYVE 451 (595)
Q Consensus 438 ~~k~~fl~~lGf~~ 451 (595)
.+.++-|.+|||++
T Consensus 30 ee~i~~L~~MGF~~ 43 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDR 43 (73)
T ss_dssp HHHHHHHHTTTCCH
T ss_pred HHHHHHHHHhCCCH
Confidence 55666777777754
No 10
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.70 E-value=16 Score=25.84 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=17.3
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHH
Q 007621 474 FDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNY 515 (595)
Q Consensus 474 ~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~ 515 (595)
++-|.++||+++.+...++.+- ..++.-++||.+.
T Consensus 13 v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 13 LKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 3444455555555555544431 2355555555554
No 11
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.44 E-value=26 Score=25.41 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc
Q 007621 282 SETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL 327 (595)
Q Consensus 282 ~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l 327 (595)
.+.|+-|.++||++++..+++.++ ..++...++||.+.
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 457888999999999999988873 34788899998864
No 12
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.53 E-value=20 Score=23.13 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH
Q 007621 438 VEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV 478 (595)
Q Consensus 438 ~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~ 478 (595)
...++.|++|||.... .-..|+..-.| .+..-++.|.
T Consensus 3 ~~QL~~L~~MGF~d~~-~Ni~AL~~t~G---dv~~Aie~Ll 39 (41)
T d2daha1 3 QVQLEQLRSMGFLNRE-ANLQALIATGG---DVDAAVEKLR 39 (41)
T ss_dssp HHHHHHHHHHTCCCHH-HHHHHHHHHTS---CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHcCC---CHHHHHHHHH
Confidence 4567889999997443 23345444333 3444444443
No 13
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.76 E-value=34 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc
Q 007621 283 ETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL 327 (595)
Q Consensus 283 ~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l 327 (595)
+.|+-|.++||++++..++++.. ..++...++||.+.
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 31 SSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHHcC
Confidence 46788889999999999999885 24788888888764
No 14
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.03 E-value=19 Score=24.95 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=28.9
Q ss_pred HHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccc
Q 007621 221 ENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIG 267 (595)
Q Consensus 221 ~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~ 267 (595)
+..|+|...|.+.+...|.+ +++ +-+.+.+..+++|..|+...
T Consensus 8 ~~agVS~sTVSr~ln~~~~v---s~~-tr~rV~~~a~~lgY~pn~~A 50 (57)
T d1qpza1 8 KRANVSTTTVSHVINKTRFV---AEE-TRNAVWAAIKELHYSPSAVA 50 (57)
T ss_dssp HHHTSCHHHHHHHHHTCSCC---CHH-HHHHHHHHHHHHTCCCCHHH
T ss_pred HHHCcCHHHHHHHHCCCCcc---CHH-HHHHHHHHHHHHCCCCCHHH
Confidence 56799999999999887754 332 24455566667777666433
No 15
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.75 E-value=36 Score=25.03 Aligned_cols=45 Identities=13% Similarity=0.309 Sum_probs=33.6
Q ss_pred CChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH-cCCC
Q 007621 276 YNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK-LGLK 330 (595)
Q Consensus 276 ~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~-lGl~ 330 (595)
..|.. +=+.+|++..+|..+-..+|. +..+.....+.-+.. .|-.
T Consensus 14 ~~Wk~------lar~LGls~~~i~~I~~~~~~----~~~eq~~~mL~~W~~~~g~~ 59 (87)
T d1icha_ 14 LRWKE------FVKRLGLSDHEIDRLELQNGR----CLREAQYSMLATWRRRTPRR 59 (87)
T ss_dssp TTHHH------HHHHHTCCHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHH------HHHHhCcCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHhhCCC
Confidence 45776 335799999999999999986 455677788887764 4643
No 16
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=28.45 E-value=11 Score=28.47 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHH
Q 007621 86 TEAQEVLFDYLHSTRSLGYMDA 107 (595)
Q Consensus 86 ~~a~~~~~~YL~~tcgLs~~~A 107 (595)
.+-...+++||..+.|+.|+.+
T Consensus 53 ~~e~~~Iv~YLa~~yG~~p~e~ 74 (84)
T d1jmxa1 53 DDDRRTLVKYLADKQGLAPSET 74 (84)
T ss_dssp HHHHHHHHHHHHHHTCCCGGGS
T ss_pred HHHHHHHHHHHHHHcCCCcccc
Confidence 4556788999999999998655
No 17
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.37 E-value=13 Score=26.45 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHH
Q 007621 472 ERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKN 514 (595)
Q Consensus 472 ~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~ 514 (595)
+.++-|.++||+++++.+.++.+ -.+++.-++||..
T Consensus 21 ~~v~~L~~MGF~~~~a~~AL~~~-------~~n~e~A~~~Lls 56 (63)
T d1wgna_ 21 QCVETVVNMGYSYECVLRAMKKK-------GENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH-------CSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHh
Confidence 44555555666655555555432 1135555555554
No 18
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=28.35 E-value=20 Score=23.16 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHhCCC
Q 007621 284 TLDFLYKIGYNEVQLLNLFKTNPA 307 (595)
Q Consensus 284 ~l~~l~~lG~s~~~I~~lv~~~P~ 307 (595)
.|+-|.++||++++..+++.++-+
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~~w 30 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKCNW 30 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCHHHHHHHHHHcCC
Confidence 466677899999999999988754
No 19
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.26 E-value=26 Score=24.39 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=29.3
Q ss_pred HHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccc
Q 007621 221 ENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIG 267 (595)
Q Consensus 221 ~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~ 267 (595)
+..|+|...|...+...|.+ +++ +-..+.+.++++|..|+...
T Consensus 10 ~~agvS~sTVSr~l~~~~~v---s~~-tr~rI~~~a~~lgY~pn~~A 52 (59)
T d1efaa1 10 EYAGVSYQTVSRVVNQASHV---SAK-TREKVEAAMAELNYIPNRVA 52 (59)
T ss_dssp HTTTSCHHHHHHHHTTCSSC---CTH-HHHHHHHHHHHHTCCCCHHH
T ss_pred HHHCCCHHHHHHHHCCCCcC---CHH-HHHHHHHHHHHHCCCcCHHH
Confidence 56899999999998777654 333 34555566677777666544
No 20
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=27.51 E-value=13 Score=28.05 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHH
Q 007621 85 RTEAQEVLFDYLHSTRSLGYMDAE 108 (595)
Q Consensus 85 ~~~a~~~~~~YL~~tcgLs~~~A~ 108 (595)
..+-...+++||..+.|+.++.+.
T Consensus 52 ~~~e~~~Iv~YLa~~yG~~p~e~~ 75 (85)
T d1pbya1 52 EPEERAAIVRHLSDTRGLSLAETE 75 (85)
T ss_dssp CHHHHHHHHHHHHHHSCCCSGGGT
T ss_pred CHHHHHHHHHHHHHHcCCCccccc
Confidence 344566788999999999988764
No 21
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.55 E-value=51 Score=22.95 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHc
Q 007621 283 ETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKL 327 (595)
Q Consensus 283 ~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~l 327 (595)
+.|+-|.++||++.+..+++..+ .+++...++||.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 11 KALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 46777888999999999998875 23678888888763
No 22
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.25 E-value=19 Score=24.30 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=15.8
Q ss_pred HHHHHHcCCCCChhHHHHHHHHhhcCh-hHHHHHHHHHH
Q 007621 441 TEFLLRLGYVENSEEVTKALKQFRGRG-DQLQERFDCLV 478 (595)
Q Consensus 441 ~~fl~~lGf~~~~~~~~~al~~~~~~~-~~l~~r~~~L~ 478 (595)
++-|.+|||+++ .|.+++..++ ..++.-++|+.
T Consensus 6 v~~L~~MGF~~~-----~a~~Al~~t~n~~ve~A~~Wl~ 39 (51)
T d2crna1 6 LEPLLAMGFPVH-----TALKALAATGRKTAEEALAWLH 39 (51)
T ss_dssp HHHHHHTSCCHH-----HHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHcCCCHH-----HHHHHHHHHCCCCHHHHHHHHH
Confidence 344566777654 2333332222 24555566655
No 23
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.23 E-value=38 Score=22.74 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHH
Q 007621 284 TLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLL 325 (595)
Q Consensus 284 ~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~ 325 (595)
.++-|.++||++++..+++... ...+++..+++|.
T Consensus 15 ~l~~L~~MGF~~~~a~~AL~~t-------~n~~ve~A~~WLl 49 (51)
T d2cpwa1 15 ALDVLLSMGFPRARAQKALAST-------GGRSVQTACDWLF 49 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHT-------TTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH-------CCCCHHHHHHHHH
Confidence 5777888999999999888753 2236777777765
No 24
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.02 E-value=21 Score=25.22 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHHHhCCCHHHHHHHHHh
Q 007621 438 VEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKR 493 (595)
Q Consensus 438 ~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~~~G~s~~ev~~mi~~ 493 (595)
.+.++-|.+|||+++. - .+-|+..|.+.+.....+..
T Consensus 20 e~~v~~L~~MGF~~~~--a-----------------~~AL~~~~~n~e~A~~~Lls 56 (63)
T d1wgna_ 20 RQCVETVVNMGYSYEC--V-----------------LRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCCHHH--H-----------------HHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHH--H-----------------HHHHHHcCCCHHHHHHHHHh
Confidence 6788999999997542 1 22345667787776666544
No 25
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.64 E-value=66 Score=22.03 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=30.1
Q ss_pred HHhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchHHHH-HHHHHcCCCCCh
Q 007621 393 CSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKT-EFLLRLGYVENS 453 (595)
Q Consensus 393 L~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~-~fl~~lGf~~~~ 453 (595)
-+..|++...+.++|...|.-.. . . +...+++ +...++||.+|.
T Consensus 7 A~~agvS~sTVSrvLn~~~~~~~-------------v---s-~~tr~rV~~~a~~lgY~pn~ 51 (59)
T d1uxda_ 7 ARLAGVSRTTASYVINGKAKQYR-------------V---S-DKTVEKVMAVVREHNYHPNA 51 (59)
T ss_dssp HHHHTSCTTHHHHHHHTCGGGTT-------------C---T-TTTHHHHHHHHHHHTCCCCS
T ss_pred HHHHCcCHHHHHHHHcCCCCcCc-------------C---C-HHHHHHHHHHHHHHCCCcCH
Confidence 35589999999999998876321 0 1 1234555 566889999874
No 26
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=22.65 E-value=1.2e+02 Score=25.43 Aligned_cols=139 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHc-CCChhHHHHHHhhCCceeeccccccHHHHHHHHHHhC-CChhhHHHHHHhcCcccccc-cccchHH
Q 007621 315 QKVYVLFGRLLKL-GLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIG-MGMKDISNMVLMHAELMGSC-SLKGPKT 391 (595)
Q Consensus 315 ~~l~~~v~fL~~l-Gl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~G-l~~~~I~~il~~~P~lL~~s-~lk~~i~ 391 (595)
+.+++.++-+.+. |.-+ ++.+++..+|.++. ..+.=.-.++..-| ++.....-+..+-..+-++. .......
T Consensus 20 ~~~~~~~~~~~~~~G~vp-N~~~~la~~P~~l~----a~~~~~~~~~~~~~~L~~~~rEli~l~vS~~n~C~YC~~~H~~ 94 (190)
T d2pfxa1 20 DETQKYFEICQEKLGMVP-NVLKAYAFNVEKLN----AFTAMYNDLMLGESQLSKLEREMIAVVVSSINKCFYCLVAHGA 94 (190)
T ss_dssp HHHHHHHHHHHHHHSSCC-HHHHHHTTSHHHHH----HHHHHHHHHHHSSCSSCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc-HHHHHHHcCHHHHH----HHHHHHHHHHhccccccHHHHHHHHHHHHHHhCCcHHHHHHHH
Q ss_pred HHHhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHH
Q 007621 392 VCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQ 471 (595)
Q Consensus 392 ~L~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~ 471 (595)
.++.+|.+.+.+..+......... .++.+.+.+ .|-.+....+.-=.
T Consensus 95 ~~~~~g~~~~~~~~i~~~~~~~~~----------------------~~~e~all~-----------~a~~l~~~~~~v~d 141 (190)
T d2pfxa1 95 AVRQLSGDPQLGEMLVMNYRVAPL----------------------DARQRVMLD-----------FAAKMTRASAEIEE 141 (190)
T ss_dssp HHHHHHTCHHHHHHHHHCGGGSCC----------------------CHHHHHHHH-----------HHHHHHHHGGGCCH
T ss_pred HHHHhcCChhhhhhHHhhcccchh----------------------hHHHHHHHH-----------HHHHHHhCcCCCCH
Q ss_pred HHHHHHHHhCCCHHHHHHHH
Q 007621 472 ERFDCLVQAGLDSNVVRNIV 491 (595)
Q Consensus 472 ~r~~~L~~~G~s~~ev~~mi 491 (595)
+-++-|++.||+++||..++
T Consensus 142 ~~~~~L~~~G~sd~eI~el~ 161 (190)
T d2pfxa1 142 ADREVLRSHGFNDRDIWDIA 161 (190)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
No 27
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=21.84 E-value=51 Score=21.26 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=33.5
Q ss_pred HHHHhhc-CCCcchHHHHHHhcccccccCchhhHHHHHHHHHCCCChHHHHHH
Q 007621 182 FHVLCDY-GIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKL 233 (595)
Q Consensus 182 ~~~L~~~-g~s~~~i~~~~k~~p~ll~~~~~~l~~~l~~L~~lGls~~~I~kl 233 (595)
|.-|.++ |+++++..++++++...- ++-+.-++-|++-|++.++|..+
T Consensus 3 yaslisirgidreraerllkkyggys----kvreagveelredgltdaqirel 51 (55)
T d2csba4 3 YASLISIRGIDRERAERLLKKYGGYS----KVREAGVEELREDGLTDAQIREL 51 (55)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHH----HHHTSCHHHHHHTTCCHHHHHHH
T ss_pred ccceeeeecccHHHHHHHHHHhcChh----HHHHhhHHHHHHccccHHHHHHh
Confidence 4455554 788888888888765332 22233467899999999998765
No 28
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=21.21 E-value=30 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhC
Q 007621 249 FVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTN 305 (595)
Q Consensus 249 l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~ 305 (595)
-+.++++|++-|++...+- +.+-+++.+++..++...
T Consensus 13 srkal~~L~~~~i~~~~id--------------------y~k~pls~~eL~~ll~~l 49 (138)
T d1j9ba_ 13 SRNTLEMIRNSGTEPTIIL--------------------YLENPPSRDELVKLIADM 49 (138)
T ss_dssp HHHHHHHHHHTTCCCEEEC--------------------TTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEe--------------------eccCCCCHHHHHHHHHHc
Confidence 5677888888887755321 112567777777776653
No 29
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=20.26 E-value=49 Score=27.45 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=42.3
Q ss_pred HCCCChHHHHHHHHhCCcceecCccchHHHHH---HHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHH
Q 007621 222 NLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVL---EKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQL 298 (595)
Q Consensus 222 ~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v---~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I 298 (595)
..|++.++|..+..-.|+.|.. +..+| +.++..|...- -.+.+.-.+.+|||+.+|
T Consensus 42 r~G~sveeI~elTkID~WFL~q-----i~~Iv~~E~~l~~~~~~~l----------------~~~~l~~aK~~GFSD~~i 100 (153)
T d1a9xa1 42 RAGLSVDGVFNLTNIDRWFLVQ-----IEELVRLEEKVAEVGITGL----------------NADFLRQLKRKGFADARL 100 (153)
T ss_dssp HTTBCHHHHHHHHCCCHHHHHH-----HHHHHHHHHHHHHHTGGGC----------------CHHHHHHHHHTTCCHHHH
T ss_pred HcCCCHHHHHHhhCeeeHHHHH-----HHHHHHHHhhhhhcCcccC----------------CHHHHHHHHHcCCCHHHH
Confidence 4699999999999889999763 44444 33444332110 123566778999999999
Q ss_pred HHHHH
Q 007621 299 LNLFK 303 (595)
Q Consensus 299 ~~lv~ 303 (595)
+.+..
T Consensus 101 a~l~~ 105 (153)
T d1a9xa1 101 AKLAG 105 (153)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 98754
No 30
>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.09 E-value=1.8e+02 Score=22.74 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHH-cCCChhHHHHHHhhCCceeeccccccHHHHHHHHHHhCC
Q 007621 287 FLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGM 365 (595)
Q Consensus 287 ~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl 365 (595)
+=+.+|+++.+|..+-..+|. +..+.....+..|.. .|-.. .+..-+..|+++|+
T Consensus 32 lar~LGls~~~I~~I~~~~~~----d~~eq~~qmL~~W~~~~G~~a--------------------t~~~L~~aL~~~~~ 87 (127)
T d1ddfa_ 32 FVRKNGVNEAKIDEIKNDNVQ----DTAEQKVQLLRNWHQLHGKKE--------------------AYDTLIKDLKKANL 87 (127)
T ss_dssp HHHTTTSCHHHHHHHHHTTTT----CCSSHHHHHHHHHHHHSCSSS--------------------HHHHHHHHHHHTTC
T ss_pred HHHHcCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHhCchh--------------------HHHHHHHHHHHcCc
Confidence 345799999999999999996 344577788877775 46542 23334467777777
Q ss_pred Ch--hhHHHHH
Q 007621 366 GM--KDISNMV 374 (595)
Q Consensus 366 ~~--~~I~~il 374 (595)
.+ +.|..++
T Consensus 88 ~dlAeki~~~~ 98 (127)
T d1ddfa_ 88 CTLAEKIQTII 98 (127)
T ss_dssp SSHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 64 4555444
Done!