BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007622
         (595 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NRX|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
           Prc1, A Conserved Non-Motor Microtubule Binding Protein
 pdb|3NRX|B Chain B, Insights Into Anti-Parallel Microtubule Crosslinking By
           Prc1, A Conserved Non-Motor Microtubule Binding Protein
          Length = 130

 Score = 33.5 bits (75), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 14/82 (17%)

Query: 385 KVIMEKVERWMLARDEERW-----LEEYSMDENRYSVSRGAHRNLRRAERARVTVKK-IP 438
           K + E V++W     EE W      E  + D NR++ +RG   NL + E+ R  ++K +P
Sbjct: 13  KELFEGVQKW-----EETWRLFLEFERKASDPNRFT-NRGG--NLLKEEKQRAKLQKMLP 64

Query: 439 ALVDSLFAMTKSWEEERKKVFL 460
            L + L A  + WE+E  K F+
Sbjct: 65  KLEEELKARIELWEQEHSKAFM 86


>pdb|3NRY|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
           Prc1, A Conserved Microtubule Binding Protein
          Length = 130

 Score = 32.7 bits (73), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 385 KVIMEKVERWMLARDEERW-----LEEYSMDENRYSVSRGAHRNLRRAERARVTVKK-IP 438
           K + E V++W     EE W      E  + D NR++ +RG   NL + E+ R  ++K +P
Sbjct: 13  KELFEGVQKW-----EETWRLFLEFERKASDPNRFT-NRGG--NLLKEEKQRAKLQKXLP 64

Query: 439 ALVDSLFAMTKSWEEERKKVF 459
            L + L A  + WE+E  K F
Sbjct: 65  KLEEELKARIELWEQEHSKAF 85


>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz
 pdb|2R75|1 Chain 1, Aquifex Aeolicus Ftsz With 8-Morpholino-Gtp
          Length = 338

 Score = 29.3 bits (64), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 528 ANPLNRRISMGIQQLGTYSINSATQGISFIKEGRKVQEQKKFAR 571
           +N +NR    GI+ +  Y+IN+  Q +S +K   K+Q  +K  R
Sbjct: 20  SNAVNRMYEDGIEGVELYAINTDVQHLSTLKVPNKIQIGEKVTR 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,043,627
Number of Sequences: 62578
Number of extensions: 493967
Number of successful extensions: 1238
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1226
Number of HSP's gapped (non-prelim): 27
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)