Query 007622
Match_columns 595
No_of_seqs 252 out of 505
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 13:07:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4302 Microtubule-associated 100.0 5E-109 1E-113 908.9 60.6 560 13-588 9-575 (660)
2 PF03999 MAP65_ASE1: Microtubu 100.0 3E-81 6.4E-86 708.6 14.2 447 41-512 2-468 (619)
3 PF03999 MAP65_ASE1: Microtubu 99.9 2.1E-25 4.6E-30 253.3 10.1 413 19-513 34-473 (619)
4 KOG4302 Microtubule-associated 99.9 7.3E-20 1.6E-24 203.4 45.1 270 24-312 74-361 (660)
5 PRK04778 septation ring format 95.3 7.4 0.00016 44.7 34.0 215 22-273 64-303 (569)
6 KOG0996 Structural maintenance 93.4 21 0.00046 43.6 24.0 101 227-337 931-1033(1293)
7 TIGR03185 DNA_S_dndD DNA sulfu 93.0 23 0.00049 41.4 37.0 243 103-394 206-457 (650)
8 TIGR00606 rad50 rad50. This fa 92.4 40 0.00087 42.8 30.1 65 334-398 678-742 (1311)
9 PHA02562 46 endonuclease subun 91.8 27 0.00059 39.6 27.6 96 38-144 149-244 (562)
10 KOG1029 Endocytic adaptor prot 89.8 16 0.00035 42.7 17.1 68 63-143 435-502 (1118)
11 KOG4643 Uncharacterized coiled 89.0 61 0.0013 39.2 31.9 83 55-141 261-343 (1195)
12 KOG0161 Myosin class II heavy 88.7 92 0.002 40.9 29.7 47 43-90 1041-1087(1930)
13 KOG4674 Uncharacterized conser 84.4 1.4E+02 0.0031 38.8 30.0 213 23-265 544-772 (1822)
14 KOG2129 Uncharacterized conser 84.2 70 0.0015 35.0 18.5 17 302-318 254-270 (552)
15 TIGR00634 recN DNA repair prot 83.7 48 0.001 38.0 17.4 124 56-207 264-395 (563)
16 PF06160 EzrA: Septation ring 82.8 97 0.0021 35.6 36.4 91 18-124 56-147 (560)
17 KOG0994 Extracellular matrix g 82.5 1.4E+02 0.0029 37.1 20.5 40 230-269 1590-1629(1758)
18 PHA02562 46 endonuclease subun 81.8 36 0.00078 38.6 15.4 18 232-249 387-404 (562)
19 PF10174 Cast: RIM-binding pro 81.3 1.3E+02 0.0028 36.0 37.7 223 20-277 26-270 (775)
20 TIGR03185 DNA_S_dndD DNA sulfu 81.2 1.2E+02 0.0026 35.5 38.9 186 59-270 217-416 (650)
21 PRK11637 AmiB activator; Provi 80.8 95 0.0021 34.2 23.4 74 57-143 60-133 (428)
22 KOG0995 Centromere-associated 80.1 1.2E+02 0.0025 34.8 29.0 112 230-379 452-567 (581)
23 PF12128 DUF3584: Protein of u 79.0 1.9E+02 0.0041 36.6 29.8 41 163-203 768-811 (1201)
24 PF15070 GOLGA2L5: Putative go 78.6 1.4E+02 0.003 34.8 27.9 129 40-191 12-147 (617)
25 KOG0250 DNA repair protein RAD 78.3 1.8E+02 0.0038 35.8 25.7 37 163-199 334-370 (1074)
26 TIGR02169 SMC_prok_A chromosom 77.4 1.9E+02 0.0041 35.7 36.2 33 167-199 799-831 (1164)
27 PRK11637 AmiB activator; Provi 77.3 1.2E+02 0.0026 33.4 23.3 40 104-143 45-84 (428)
28 PF08317 Spc7: Spc7 kinetochor 76.5 1.1E+02 0.0024 32.5 25.1 85 52-143 69-161 (325)
29 TIGR02168 SMC_prok_B chromosom 74.8 2.2E+02 0.0047 35.1 31.6 12 368-379 968-979 (1179)
30 KOG0250 DNA repair protein RAD 74.4 2.2E+02 0.0048 35.0 21.8 77 112-199 336-413 (1074)
31 PF10498 IFT57: Intra-flagella 74.4 64 0.0014 35.0 13.7 78 55-141 217-294 (359)
32 PF08317 Spc7: Spc7 kinetochor 74.0 1.3E+02 0.0028 32.1 19.1 75 104-199 168-242 (325)
33 PRK02224 chromosome segregatio 73.2 2.2E+02 0.0047 34.4 37.6 25 366-390 483-507 (880)
34 PF10146 zf-C4H2: Zinc finger- 73.0 1.1E+02 0.0024 31.0 16.5 108 55-211 5-113 (230)
35 KOG0963 Transcription factor/C 72.3 1.9E+02 0.0042 33.4 20.8 135 71-205 79-215 (629)
36 PF05557 MAD: Mitotic checkpoi 72.2 19 0.00041 42.6 9.9 44 300-344 605-649 (722)
37 PF11995 DUF3490: Domain of un 72.2 22 0.00048 33.8 8.2 106 255-366 3-130 (161)
38 PF10168 Nup88: Nuclear pore c 69.7 2.4E+02 0.0053 33.5 23.9 116 123-260 599-714 (717)
39 PF12252 SidE: Dot/Icm substra 69.5 2.8E+02 0.0061 34.2 22.4 41 301-341 1298-1344(1439)
40 cd09234 V_HD-PTP_like Protein- 67.4 1.8E+02 0.0039 31.1 32.6 194 51-262 6-219 (337)
41 PF15070 GOLGA2L5: Putative go 67.3 2.5E+02 0.0055 32.8 24.1 106 70-193 2-107 (617)
42 PF14643 DUF4455: Domain of un 67.1 2.2E+02 0.0047 32.0 32.3 40 230-269 322-361 (473)
43 KOG4643 Uncharacterized coiled 66.7 3.1E+02 0.0068 33.6 36.5 153 14-199 173-334 (1195)
44 KOG4674 Uncharacterized conser 66.6 4.1E+02 0.0088 34.9 35.8 83 50-145 695-777 (1822)
45 KOG0964 Structural maintenance 65.4 3.3E+02 0.0071 33.4 29.5 77 305-394 906-982 (1200)
46 COG4026 Uncharacterized protei 64.7 79 0.0017 31.8 10.7 45 230-274 169-213 (290)
47 PRK02224 chromosome segregatio 64.2 3.3E+02 0.007 32.9 35.7 31 364-394 411-441 (880)
48 PF13514 AAA_27: AAA domain 63.1 3.9E+02 0.0084 33.5 36.8 103 166-273 736-843 (1111)
49 TIGR03007 pepcterm_ChnLen poly 62.9 2.6E+02 0.0056 31.3 23.4 140 113-264 204-343 (498)
50 PF04108 APG17: Autophagy prot 62.3 2.5E+02 0.0054 31.0 33.4 278 66-367 74-403 (412)
51 PLN03188 kinesin-12 family pro 61.3 4.3E+02 0.0093 33.4 20.4 32 233-264 969-1005(1320)
52 PF12325 TMF_TATA_bd: TATA ele 61.2 1.2E+02 0.0026 27.7 10.6 39 45-84 25-63 (120)
53 KOG0018 Structural maintenance 61.0 4E+02 0.0087 32.9 24.4 67 321-397 882-961 (1141)
54 PF07106 TBPIP: Tat binding pr 60.7 89 0.0019 29.8 10.4 41 161-201 67-107 (169)
55 KOG0933 Structural maintenance 60.7 4E+02 0.0086 32.8 23.3 279 20-339 710-996 (1174)
56 TIGR00606 rad50 rad50. This fa 59.7 4.8E+02 0.01 33.4 37.7 108 54-193 182-289 (1311)
57 COG1196 Smc Chromosome segrega 59.3 4.6E+02 0.0099 33.0 36.6 23 423-445 985-1008(1163)
58 PF13514 AAA_27: AAA domain 59.1 4.5E+02 0.0098 32.9 41.4 197 55-271 561-776 (1111)
59 TIGR02169 SMC_prok_A chromosom 59.1 4.3E+02 0.0093 32.7 32.5 18 368-385 954-971 (1164)
60 PF13543 KSR1-SAM: SAM like do 58.5 1.1E+02 0.0025 28.2 10.0 111 163-282 10-125 (129)
61 PRK03918 chromosome segregatio 58.2 4E+02 0.0087 32.1 30.1 41 228-268 656-696 (880)
62 PRK10869 recombination and rep 57.8 2.6E+02 0.0057 32.1 15.2 123 56-206 259-389 (553)
63 PF04912 Dynamitin: Dynamitin 57.3 2.9E+02 0.0063 30.1 20.9 56 183-245 205-260 (388)
64 cd09238 V_Alix_like_1 Protein- 57.2 2.7E+02 0.0059 29.8 35.2 197 52-262 7-223 (339)
65 PF13949 ALIX_LYPXL_bnd: ALIX 57.0 2.4E+02 0.0052 29.1 27.3 117 71-194 49-169 (296)
66 PF03915 AIP3: Actin interacti 56.5 3.2E+02 0.007 30.4 18.9 171 165-394 150-321 (424)
67 PF12128 DUF3584: Protein of u 55.7 5.3E+02 0.011 32.7 38.1 50 225-274 765-817 (1201)
68 PRK09039 hypothetical protein; 55.2 3E+02 0.0065 29.6 17.9 182 41-243 51-250 (343)
69 PF07106 TBPIP: Tat binding pr 54.5 2E+02 0.0043 27.4 12.0 26 163-188 142-167 (169)
70 PF04849 HAP1_N: HAP1 N-termin 54.2 2.9E+02 0.0064 29.3 20.7 145 165-336 159-303 (306)
71 COG1340 Uncharacterized archae 54.0 2.9E+02 0.0063 29.1 22.3 38 166-203 158-195 (294)
72 PRK03918 chromosome segregatio 53.6 4.7E+02 0.01 31.5 37.0 24 363-386 450-473 (880)
73 cd09234 V_HD-PTP_like Protein- 53.3 3.1E+02 0.0067 29.3 28.9 113 80-198 108-220 (337)
74 PF05667 DUF812: Protein of un 53.3 4.2E+02 0.0092 30.8 20.6 203 232-461 329-534 (594)
75 KOG4603 TBP-1 interacting prot 53.1 2.2E+02 0.0049 27.6 16.9 102 53-196 81-182 (201)
76 PF11995 DUF3490: Domain of un 53.0 13 0.00028 35.3 3.0 24 326-349 3-26 (161)
77 COG1340 Uncharacterized archae 52.9 3E+02 0.0066 29.0 25.4 79 60-144 22-100 (294)
78 cd08915 V_Alix_like Protein-in 52.7 3.1E+02 0.0068 29.1 28.8 116 78-198 104-222 (342)
79 COG4026 Uncharacterized protei 52.4 2.5E+02 0.0055 28.4 11.9 41 103-143 132-172 (290)
80 PF09738 DUF2051: Double stran 52.2 2.7E+02 0.0058 29.5 13.0 41 224-264 197-245 (302)
81 PF10473 CENP-F_leu_zip: Leuci 52.2 2.1E+02 0.0045 26.9 11.5 72 57-141 30-101 (140)
82 KOG0972 Huntingtin interacting 52.0 1.7E+02 0.0037 30.7 11.0 34 56-89 225-258 (384)
83 PF09726 Macoilin: Transmembra 51.0 1.9E+02 0.0042 34.2 12.9 122 51-203 538-659 (697)
84 PF00038 Filament: Intermediat 50.9 3.1E+02 0.0067 28.5 25.6 77 55-137 58-134 (312)
85 TIGR03007 pepcterm_ChnLen poly 50.9 4E+02 0.0086 29.8 22.5 141 59-203 205-347 (498)
86 COG4913 Uncharacterized protei 50.6 3.2E+02 0.007 32.4 13.8 112 57-192 767-882 (1104)
87 PF10498 IFT57: Intra-flagella 50.0 46 0.001 36.1 7.1 95 109-204 216-311 (359)
88 KOG0978 E3 ubiquitin ligase in 49.5 5.1E+02 0.011 30.7 19.6 23 126-148 460-482 (698)
89 COG0497 RecN ATPase involved i 48.8 3.9E+02 0.0084 30.8 14.3 89 106-209 297-393 (557)
90 PF11629 Mst1_SARAH: C termina 48.6 22 0.00049 27.1 3.1 25 368-392 22-47 (49)
91 cd09237 V_ScBro1_like Protein- 48.6 3.7E+02 0.0081 28.8 32.3 195 52-262 7-229 (356)
92 PRK09039 hypothetical protein; 48.5 3.8E+02 0.0082 28.8 17.9 105 67-202 48-152 (343)
93 PF02183 HALZ: Homeobox associ 48.3 91 0.002 23.4 6.3 42 47-89 2-43 (45)
94 KOG0964 Structural maintenance 47.8 6.2E+02 0.014 31.2 22.4 24 469-492 975-998 (1200)
95 PF09349 OHCU_decarbox: OHCU d 47.8 1.3E+02 0.0028 28.6 9.0 100 386-485 38-143 (159)
96 PF08606 Prp19: Prp19/Pso4-lik 47.7 1.6E+02 0.0035 24.3 8.2 65 17-83 3-68 (70)
97 TIGR03180 UraD_2 OHCU decarbox 47.2 2.6E+02 0.0057 26.6 11.1 54 433-486 84-141 (158)
98 cd07610 FCH_F-BAR The Extended 46.6 2.7E+02 0.0057 26.5 13.2 159 164-340 15-183 (191)
99 PF00038 Filament: Intermediat 44.9 3.8E+02 0.0082 27.8 30.0 36 106-141 54-89 (312)
100 PF06705 SF-assemblin: SF-asse 44.4 3.5E+02 0.0077 27.4 18.4 146 19-203 93-238 (247)
101 KOG0161 Myosin class II heavy 42.8 9.8E+02 0.021 32.0 34.1 149 53-207 1191-1342(1930)
102 cd00632 Prefoldin_beta Prefold 41.7 2.4E+02 0.0052 24.6 9.9 33 232-264 71-103 (105)
103 PRK13799 unknown domain/N-carb 40.6 2.2E+02 0.0048 32.9 11.2 101 384-485 43-155 (591)
104 TIGR02168 SMC_prok_B chromosom 40.6 7.8E+02 0.017 30.3 32.9 18 436-453 969-986 (1179)
105 PF06818 Fez1: Fez1; InterPro 40.1 2.2E+02 0.0048 28.4 9.4 41 166-206 10-50 (202)
106 TIGR03164 UHCUDC OHCU decarbox 40.0 3.4E+02 0.0073 25.8 10.9 62 424-485 75-140 (157)
107 PF15254 CCDC14: Coiled-coil d 39.8 5.7E+02 0.012 30.6 13.9 163 17-196 336-517 (861)
108 smart00787 Spc7 Spc7 kinetocho 39.7 4.9E+02 0.011 27.7 20.7 144 46-246 139-286 (312)
109 KOG0612 Rho-associated, coiled 39.6 8.9E+02 0.019 30.6 29.2 38 229-266 635-673 (1317)
110 PRK13798 putative OHCU decarbo 39.1 1.3E+02 0.0028 29.0 7.6 53 433-485 89-145 (166)
111 KOG0982 Centrosomal protein Nu 38.8 5.9E+02 0.013 28.3 14.9 193 53-264 224-436 (502)
112 PF11365 DUF3166: Protein of u 38.0 2.8E+02 0.0061 24.4 8.8 36 44-80 9-44 (96)
113 PF09789 DUF2353: Uncharacteri 37.9 5.4E+02 0.012 27.6 20.4 193 55-262 27-227 (319)
114 PF04065 Not3: Not1 N-terminal 37.2 4.7E+02 0.01 26.7 14.9 32 423-454 112-144 (233)
115 cd07627 BAR_Vps5p The Bin/Amph 37.1 4.3E+02 0.0093 26.2 16.9 87 230-340 121-214 (216)
116 PF10243 MIP-T3: Microtubule-b 36.1 12 0.00026 42.7 0.0 99 66-198 429-527 (539)
117 PF10211 Ax_dynein_light: Axon 35.8 4.3E+02 0.0093 25.9 15.2 23 67-89 122-144 (189)
118 PRK04778 septation ring format 35.5 7.4E+02 0.016 28.5 29.6 270 43-325 198-496 (569)
119 PF15035 Rootletin: Ciliary ro 35.4 4.3E+02 0.0094 25.8 11.1 84 52-138 82-177 (182)
120 cd09236 V_AnPalA_UmRIM20_like 34.7 6.1E+02 0.013 27.3 35.1 198 52-262 7-223 (353)
121 COG4942 Membrane-bound metallo 34.2 6.9E+02 0.015 27.8 23.4 138 41-199 36-176 (420)
122 KOG4460 Nuclear pore complex, 32.7 8.2E+02 0.018 28.2 21.8 35 225-259 703-737 (741)
123 COG3883 Uncharacterized protei 32.6 5.9E+02 0.013 26.5 12.8 147 103-265 28-182 (265)
124 PRK13590 putative bifunctional 32.5 3.6E+02 0.0078 31.2 11.3 62 424-485 85-155 (591)
125 cd07664 BAR_SNX2 The Bin/Amphi 32.2 5.6E+02 0.012 26.0 20.3 137 165-340 82-230 (234)
126 PF04111 APG6: Autophagy prote 32.0 6.1E+02 0.013 26.9 12.0 18 192-209 178-195 (314)
127 TIGR00634 recN DNA repair prot 31.7 8.4E+02 0.018 28.0 24.5 43 226-268 296-338 (563)
128 TIGR02231 conserved hypothetic 31.6 4.1E+02 0.0089 30.1 11.4 85 60-145 80-170 (525)
129 COG4942 Membrane-bound metallo 31.1 7.7E+02 0.017 27.4 17.6 94 106-207 38-131 (420)
130 PRK05771 V-type ATP synthase s 31.1 3.1E+02 0.0067 32.0 10.5 142 230-392 92-242 (646)
131 PF10239 DUF2465: Protein of u 31.0 6.8E+02 0.015 26.7 15.9 134 22-188 62-210 (318)
132 PRK04863 mukB cell division pr 30.4 1.3E+03 0.029 30.0 37.2 31 174-204 457-487 (1486)
133 PRK14127 cell division protein 30.0 4E+02 0.0086 23.9 8.6 49 34-90 21-69 (109)
134 KOG4398 Predicted coiled-coil 29.9 2.6E+02 0.0055 29.2 8.2 82 234-325 8-89 (359)
135 KOG4603 TBP-1 interacting prot 28.8 5.6E+02 0.012 25.0 10.9 43 162-204 75-117 (201)
136 PF10212 TTKRSYEDQ: Predicted 28.4 4.9E+02 0.011 29.6 10.8 76 48-133 439-514 (518)
137 COG0497 RecN ATPase involved i 27.6 1E+03 0.022 27.6 22.2 36 106-141 164-199 (557)
138 PF10146 zf-C4H2: Zinc finger- 27.5 6.7E+02 0.014 25.5 15.0 34 166-199 32-65 (230)
139 KOG0994 Extracellular matrix g 27.3 1.4E+03 0.03 29.1 15.7 19 73-91 1202-1220(1758)
140 PF15254 CCDC14: Coiled-coil d 26.8 1.2E+03 0.025 28.1 23.8 74 301-394 529-602 (861)
141 PF14662 CCDC155: Coiled-coil 26.6 6.4E+02 0.014 25.0 17.1 78 57-144 28-105 (193)
142 PF15290 Syntaphilin: Golgi-lo 26.1 7.3E+02 0.016 26.1 10.7 32 232-263 69-100 (305)
143 PF11802 CENP-K: Centromere-as 25.9 7.7E+02 0.017 25.7 16.9 25 164-188 50-74 (268)
144 PF10239 DUF2465: Protein of u 25.7 8.4E+02 0.018 26.0 12.2 148 73-272 59-219 (318)
145 PF11932 DUF3450: Protein of u 25.5 7.2E+02 0.016 25.2 13.2 75 56-143 40-114 (251)
146 KOG2398 Predicted proline-seri 25.2 1.1E+03 0.025 27.5 15.1 46 229-274 7-58 (611)
147 PRK09737 EcoKI restriction-mod 24.7 94 0.002 34.0 4.6 83 271-380 371-454 (461)
148 PF05597 Phasin: Poly(hydroxya 24.5 3.3E+02 0.0071 25.3 7.3 16 196-211 96-111 (132)
149 COG1196 Smc Chromosome segrega 24.3 1.5E+03 0.033 28.5 37.9 27 448-475 1080-1106(1163)
150 KOG1029 Endocytic adaptor prot 24.1 1.3E+03 0.029 27.8 26.0 28 117-144 434-461 (1118)
151 KOG3091 Nuclear pore complex, 24.0 1.1E+03 0.024 26.8 17.0 37 50-86 354-390 (508)
152 PF05557 MAD: Mitotic checkpoi 23.5 6.5E+02 0.014 29.9 11.5 139 54-207 506-648 (722)
153 PF02994 Transposase_22: L1 tr 22.7 2.1E+02 0.0045 31.2 6.6 36 232-267 152-187 (370)
154 PF06637 PV-1: PV-1 protein (P 22.3 1.1E+03 0.023 26.0 16.6 141 16-176 279-426 (442)
155 PF06160 EzrA: Septation ring 22.1 1.2E+03 0.027 26.7 24.0 39 364-402 443-481 (560)
156 PF10267 Tmemb_cc2: Predicted 22.0 1.1E+03 0.024 26.0 12.0 65 22-86 8-83 (395)
157 KOG0289 mRNA splicing factor [ 22.0 1E+03 0.022 26.7 11.3 75 15-90 64-138 (506)
158 PF04949 Transcrip_act: Transc 21.5 4.3E+02 0.0094 25.1 7.4 22 114-135 120-141 (159)
159 PF14643 DUF4455: Domain of un 21.4 1.2E+03 0.025 26.2 35.2 114 295-415 236-350 (473)
160 PF01496 V_ATPase_I: V-type AT 20.9 1.4E+02 0.003 35.6 5.3 210 184-416 31-279 (759)
161 cd00632 Prefoldin_beta Prefold 20.1 5.8E+02 0.013 22.2 8.6 31 107-137 71-101 (105)
No 1
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=5.5e-109 Score=908.88 Aligned_cols=560 Identities=45% Similarity=0.679 Sum_probs=506.1
Q ss_pred cccccchHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 007622 13 SALLETSCGYLLQELQMIWDEVGEDQFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERS 92 (595)
Q Consensus 13 ~~~~~~~c~~ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~ 92 (595)
++...+||++++.+|+.|||+||+++++|++++..|+++|+++|+++|+++...+++|+++|+.+++|++.||++||+++
T Consensus 9 ~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~ 88 (660)
T KOG4302|consen 9 SLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPS 88 (660)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHH
Q 007622 93 LPGR-PEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEY 171 (595)
Q Consensus 93 ~~~~-~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l 171 (595)
+.+. +++..+||++++..|.+.++.|+++|++|+++|.++..||+.||.+|+|. +. .+..+.+|+.|||+++|++|
T Consensus 89 ~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~--~~-~~~~~~~D~~dlsl~kLeel 165 (660)
T KOG4302|consen 89 IIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP--ED-LPSFLIADESDLSLEKLEEL 165 (660)
T ss_pred cccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc-CCcccccCcccccHHHHHHH
Confidence 7643 66788999999999999999999999999999999999999999999987 11 12234578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccc-cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007622 172 QIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFG-ISKNISDNILAKLNSTVESLEEEKKKR 250 (595)
Q Consensus 172 ~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~-~~~~lS~~~L~~L~~~~~~L~e~K~~R 250 (595)
+.+|.+|++||..|+++|.+++.+|+.||++||++|..++.+|||++.+..+ ++++||+++|++|..++..|+++|.+|
T Consensus 166 r~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr 245 (660)
T KOG4302|consen 166 REHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQR 245 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988766 689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007622 251 LEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELFLKKQK 330 (595)
Q Consensus 251 ~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~ 330 (595)
++++++|+.+|.+|||+|++|++||..|.+++ ++|+|.+++||.++|.+++.||.||++||+++||+||+++|.
T Consensus 246 ~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~ 319 (660)
T KOG4302|consen 246 LQKLQDLRTKLLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRS 319 (660)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999986 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhHHHHHHHHcCC
Q 007622 331 ELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSRKVIMEKVERWMLARDEERWLEEYSMD 410 (595)
Q Consensus 331 eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~k~Ile~vekw~~~~~Ee~wLE~~~~D 410 (595)
||++||+.+||+.+......++..++++|..|+.++|+.++.+|.++|+++.+||+|+++|++|+++|+++.||++|++|
T Consensus 320 Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~D 399 (660)
T KOG4302|consen 320 ELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNRD 399 (660)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccch
Confidence 99999999999995445555577788999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCchhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHcCCeeEEcCccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007622 411 ENRYSVSRGAHRNLRRAERARVTVKKIPALVDSLFAMTKSWEEERKKVFLYDEVPLLAMLEEYNMARQEREEEKQRQREK 490 (595)
Q Consensus 411 ~nR~~~~RG~h~~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~l~e~~~~r~eKE~ek~r~r~~ 490 (595)
.|||++|||||++|+||||+|++|+|||+|++.|+.++.+||.++|+||+|||+||++|+++|..||++||++|+|+|++
T Consensus 400 ~nR~~~~Rg~h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~~~FL~~g~~ll~m~~e~~~~r~~ke~~k~r~rd~ 479 (660)
T KOG4302|consen 400 SNRYNAGRGAHLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKGRPFLVDGVPLLEMLEEYEEHRQEKEQEKARQRDQ 479 (660)
T ss_pred hhhHhccccchhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCceeecCccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhcccCCCCCCCC----CCCCCCCCC-CCCCCCCCCCCcccccccccCcCCCCccccCccccccchhhhh
Q 007622 491 KKVQSQVVVEQENVFGSRPGSSN----RRIPNRSLN-GSFSNANPLNRRISMGIQQLGTYSINSATQGISFIKEGRKVQE 565 (595)
Q Consensus 491 kk~q~~~~~e~e~~~gs~p~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (595)
|+.|+|+.++++..|||+|+|++ +++.+.+.+ +..++++|..|+++.|.....+.+ .....| +++..+
T Consensus 480 kk~s~q~~~~~~~~~~sk~sp~~p~s~rk~~~~~t~~~~~~~~~ps~~~~s~~~~~~s~~~---~~~~~s----~r~~~~ 552 (660)
T KOG4302|consen 480 KKTSGQLKPEQEGRYGSKPSPSKPNSPRKNRGRSTPPNGSLSKTPSKRPLSGGNSAASTQN---RTTPLS----PRRLRA 552 (660)
T ss_pred cccccccCccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCccCcCCCCCCCCCccc---CCCCCC----cccccC
Confidence 99999999999999999999844 222333332 122346777777776654433322 111111 255555
Q ss_pred ccccCCCccccccCccccccccc
Q 007622 566 QKKFARFGHASHFRDETASVVST 588 (595)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~ 588 (595)
.+..|.||++..+.+..++-.++
T Consensus 553 ~st~p~n~~~~~~~~~l~s~~~~ 575 (660)
T KOG4302|consen 553 SSTTPANKVARQKIESLNSNNSS 575 (660)
T ss_pred CCCCCchhhhcccccccccCCCC
Confidence 66779999999999988764433
No 2
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=100.00 E-value=3e-81 Score=708.56 Aligned_cols=447 Identities=36% Similarity=0.526 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------CCC------CCCCCCCCC
Q 007622 41 REKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGER-----------SLP------GRPEKMTGT 103 (595)
Q Consensus 41 R~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~-----------~~~------~~~~~~~~t 103 (595)
++.|+.+++++|+++|.++|++++..++.|++.|+.+++|++.||+++|.. ++. ......++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 81 (619)
T PF03999_consen 2 CDLMVVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMP 81 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhccccc
Confidence 367899999999999999999999999999999999999999995444432 211 112234579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCC-HHHHHHHHHHHHHHHHHH
Q 007622 104 LKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLS-LKKLEEYQIELQGLHNEK 182 (595)
Q Consensus 104 L~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS-~~~L~~l~~~L~~Lq~EK 182 (595)
|++++..|+++|+.|++++.+|+++|.+++.+++.||.+||..+... ....++..|++ .++|+.|+.+|+.|++|+
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~---~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~ 158 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCL---NPFDIDESDLPSLEELEELRQHLQRLQEEK 158 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCC---ccccCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997655322 11235666666 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCch-hhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 183 NDRLQRVEKYIDAVRSLSATLGMESS-MIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKAL 261 (595)
Q Consensus 183 ~~Rl~kv~~l~~~I~~L~~~Lg~d~~-~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L 261 (595)
+.|+++|.+++..|+.||.+||++|. +.++.....+. .++..++||+++|++|...++.|+++|.+|..++++|+.+|
T Consensus 159 ~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~-~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i 237 (619)
T PF03999_consen 159 ERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYS-EDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKI 237 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccc-cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 66654322221 11268999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC
Q 007622 262 TNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELFLKKQKELEDICNNSHM 341 (595)
Q Consensus 262 ~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~eL~elw~~~~~ 341 (595)
..||++|++|.+||+.|...+ +.||.++|+++++||+||++||+++|++||+++|.||++|||+|||
T Consensus 238 ~~LW~~L~~~~ee~~~F~~~~-------------~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~ 304 (619)
T PF03999_consen 238 EELWNRLDVPEEEREAFLEEN-------------SGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHY 304 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHhhcc-------------CcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999996554 4579999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhHHHHHHHHcCCccccccccCch
Q 007622 342 EIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSRKVIMEKVERWMLARDEERWLEEYSMDENRYSVSRGAH 421 (595)
Q Consensus 342 ~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~k~Ile~vekw~~~~~Ee~wLE~~~~D~nR~~~~RG~h 421 (595)
++++|.+|. +++++.+ +|+||+.||.||++|+++|+++|+||++|++|.++|++..|||+|++|||||++ ||||
T Consensus 305 s~eer~~F~----~~~~d~~-~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~-RGg~ 378 (619)
T PF03999_consen 305 SEEERQAFT----PFYIDSY-TEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLNN-RGGH 378 (619)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG-------
T ss_pred CHHHHHHHH----HHhcccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhcc-cccH
Confidence 999988863 3343344 799999999999999999999999999999999999999999999999999996 9995
Q ss_pred hhhHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHcCCeeEEcCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhh
Q 007622 422 RNLRRAERARVTVKK-IPALVDSLFAMTKSWEEERKKVFLYDEVPLLAMLEEYNMARQEREEEKQRQREKKKVQSQVVVE 500 (595)
Q Consensus 422 ~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~l~e~~~~r~eKE~ek~r~r~~kk~q~~~~~e 500 (595)
||+|||.|++|+| ||+|++.|+.+|.+||.++|+||+|||++|+++|++|...+..++++|.+.+.+|+.+.+..++
T Consensus 379 --LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e~~~~~~~~~~~k~~~~~~k~~~~~~~~~ 456 (619)
T PF03999_consen 379 --LLKEEKERKRIQKKLPKLEEELKKKLEEWEEEHGKPFLVDGERYLEYLEEYEEQWERKREEKERSKQQKKLQNQKQTE 456 (619)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--EETTEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEcCccHHHHHHHHHHHHHhhhhhhccccccCCCCCCCccc
Confidence 8999999999997 9999999999999999999999999999999999966666666666777777888888888899
Q ss_pred hhcccCCCCCCC
Q 007622 501 QENVFGSRPGSS 512 (595)
Q Consensus 501 ~e~~~gs~p~~~ 512 (595)
+++.|||+|++.
T Consensus 457 ~~~~~~s~~s~~ 468 (619)
T PF03999_consen 457 QEMPYGSKPSPA 468 (619)
T ss_dssp HHHHC-------
T ss_pred cCCCCCCccccC
Confidence 999999977653
No 3
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=99.92 E-value=2.1e-25 Score=253.34 Aligned_cols=413 Identities=22% Similarity=0.295 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHhHhCCCHHHHHH-------------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 19 SCGYLLQELQMIWDEVGEDQFEREK-------------VLLDLE-----QECLDVYRRKVDRANISRARLHQELAESEAE 80 (595)
Q Consensus 19 ~c~~ll~eLq~IWdEIG~~e~eR~~-------------~l~~le-----qe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~E 80 (595)
....+-.++..|+.++|+....--. .+.+.+ .+++..++..+++..+.+....+.|..+..+
T Consensus 34 ~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~ 113 (619)
T PF03999_consen 34 SIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKELQEQ 113 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788887777765443111 122222 2345557888999999999999999999999
Q ss_pred HHHHHHHhCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCcc
Q 007622 81 FTHLLLSLGERSLPG---RPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSE-YDDSSTNV 156 (595)
Q Consensus 81 l~~L~~eLge~~~~~---~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~-~~~~~~~~ 156 (595)
+..||..||..+... ..+..++|-.+++..|+.+|+.|+.++..|+.+|..+..+|..+|.+|+..+. ........
T Consensus 114 ~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~ 193 (619)
T PF03999_consen 114 LEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLL 193 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhcc
Confidence 999999999865432 13444556458999999999999999999999999999999999999987764 22111111
Q ss_pred c----ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHH
Q 007622 157 I----VNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNI 232 (595)
Q Consensus 157 ~----vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~ 232 (595)
+ .+..+||.+.|+.|...+..|+.+|..|..++..+...|..||+.|+++....- .|.. .+.++|.++
T Consensus 194 ~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~-----~F~~---~~~~ls~~~ 265 (619)
T PF03999_consen 194 SYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEERE-----AFLE---ENSGLSLDT 265 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHhh---ccCcchHHH
Confidence 1 235688999999999999999999999999999999999999999998765532 1211 356789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHH
Q 007622 233 LAKLNSTVESLEEEKKKRLEK-LHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVK 311 (595)
Q Consensus 233 L~~L~~~~~~L~e~K~~R~~k-l~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~ 311 (595)
|+.|..++++|++.|.++++. |.+.+.+|.+||+.|.+++++|..|..++. .+++.++++.++.||.
T Consensus 266 i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~------------d~~~E~lL~~hE~Ei~ 333 (619)
T PF03999_consen 266 IEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYI------------DSYTEELLELHEEEIE 333 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhc------------ccchHHHHHHHHHHHH
Confidence 999999999999999999998 589999999999999999999999998873 3457899999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 007622 312 RLDQLKASKMQELFLKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSRKVIMEKV 391 (595)
Q Consensus 312 RLe~lK~~~mkelI~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~k~Ile~v 391 (595)
||++...++ +. |++.-.+...+|.....=.+......++. .-| ..||..-...-.-.+..=.--+.|..+|
T Consensus 334 ~Lk~~~~~~-k~-Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~---~RG----g~LLkEEk~rk~i~k~lPkle~~L~~~l 404 (619)
T PF03999_consen 334 RLKEEYESR-KP-ILELVEKWESLWEEMEELEESSKDPSRLN---NRG----GHLLKEEKERKRIQKKLPKLEEELKKKL 404 (619)
T ss_dssp -HHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHH-CCGG-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHhcChhhhc---ccc----cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999873 33 34566777777775532111000000110 112 1132221111111133333334555566
Q ss_pred HHHHHHhhHHHHHHHHcCCccccccccCchhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHcCCeeEEcCccHHHHHH
Q 007622 392 ERWMLARDEERWLEEYSMDENRYSVSRGAHRNLRRAERARVTVKKIPALVDSLFAMTKSWEEERKKVFLYDEVPLLAMLE 471 (595)
Q Consensus 392 ekw~~~~~Ee~wLE~~~~D~nR~~~~RG~h~~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~l~ 471 (595)
..| | ++. ..| |.- -|- + +.+.|. ++.+
T Consensus 405 ~~w-----E----~e~-g~p--Flv-~G~---------------~---~le~l~----------------------e~~~ 431 (619)
T PF03999_consen 405 EEW-----E----EEH-GKP--FLV-DGE---------------R---YLEYLE----------------------EYEE 431 (619)
T ss_dssp HHH-----H----HHH-TS----EE-TTE---------------E---HHHHHH-------------------------H
T ss_pred HHH-----H----HHc-CCe--EEE-cCc---------------c---HHHHHH----------------------HHHH
Confidence 666 1 122 233 443 333 1 111111 5667
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCC
Q 007622 472 EYNMARQEREEEKQRQREKKKVQSQVVVEQENVFGSRPGSSN 513 (595)
Q Consensus 472 e~~~~r~eKE~ek~r~r~~kk~q~~~~~e~e~~~gs~p~~~~ 513 (595)
+|..++++|+..+..++.+++.+.+..+---....+.|+||+
T Consensus 432 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~~~~s~~s~~~~~~~ 473 (619)
T PF03999_consen 432 QWERKREEKERSKQQKKLQNQKQTEQEMPYGSKPSPAPSTPS 473 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHhhhhhhccccccCCCCCCCccccCCCCCCccccCCCCCC
Confidence 799999999999988888777776554444444455566654
No 4
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.90 E-value=7.3e-20 Score=203.44 Aligned_cols=270 Identities=19% Similarity=0.250 Sum_probs=214.6
Q ss_pred HHHHHHHHhHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCC
Q 007622 24 LQELQMIWDEVGEDQFE------REKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGER---SLP 94 (595)
Q Consensus 24 l~eLq~IWdEIG~~e~e------R~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~---~~~ 94 (595)
=.+|..|..+||.+..- ....| .+++.-+...+++....++..+.++.++..+++.||.+||.+ +.+
T Consensus 74 eael~~l~s~l~~~~~~~~~~~k~e~tL----ke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~ 149 (660)
T KOG4302|consen 74 EAELNDLCSALGEPSIIGEISDKIEGTL----KEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSF 149 (660)
T ss_pred HHHHHHHHHHhCCcccccccccccCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcc
Confidence 34556666667665532 11222 334555677899999999999999999999999999999998 322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccc---c---CCCCCHHHH
Q 007622 95 GRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIV---N---ENDLSLKKL 168 (595)
Q Consensus 95 ~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~v---d---~~dlS~~~L 168 (595)
...|..+.|+ +.|+.|+.+|.+|+++|..|++++..++.+|..+|+.|+..+.......++.+ + ..++|.+.|
T Consensus 150 ~~~D~~dlsl-~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl 228 (660)
T KOG4302|consen 150 LIADESDLSL-EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETL 228 (660)
T ss_pred cccCcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHH
Confidence 3356666777 78999999999999999999999999999999999988765531111111211 2 368999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 007622 169 EEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKK 248 (595)
Q Consensus 169 ~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~ 248 (595)
+.|...+..|+.+|.+|.+++.++..+|..||+.|.++....-.-+|-+-++.+ ++.+||.++|..+..+|.+|++.|.
T Consensus 229 ~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t-~~~~ls~d~I~~ve~Ev~Rl~qlK~ 307 (660)
T KOG4302|consen 229 DRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEAT-EPNSLSLDIIEQVEKEVDRLEQLKA 307 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhh-ccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988764322232222222 5889999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHcCCCh--hHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHH
Q 007622 249 KRLEK-LHQLGKALTNLWNLMGTPY--NDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKR 312 (595)
Q Consensus 249 ~R~~k-l~~L~~~L~~LW~~L~~p~--eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~R 312 (595)
+++++ |.+.+.+|.+||+.+.+.. +.+..|..+.+.. .+.+.++.++. ++.
T Consensus 308 s~mKeli~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds------------~~~d~~ell~~-~d~ 361 (660)
T KOG4302|consen 308 SNMKELIEKKRSELEELWRLLHYSEENESRRRFITYLIDS------------GTEDVLELLEN-IDN 361 (660)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh------------ccCCHHHHHHH-HHH
Confidence 99998 5899999999999999999 9999999888542 36677777777 444
No 5
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.29 E-value=7.4 Score=44.72 Aligned_cols=215 Identities=16% Similarity=0.230 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 007622 22 YLLQELQMIWDEVGEDQ-FEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKM 100 (595)
Q Consensus 22 ~ll~eLq~IWdEIG~~e-~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~ 100 (595)
..+.+++.=|++|--.. .+=+..|.+.|..+- +-.+-.+...-..+.+.|...+.++..|..+|.+
T Consensus 64 ~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~---~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~---------- 130 (569)
T PRK04778 64 EKFEEWRQKWDEIVTNSLPDIEEQLFEAEELND---KFRFRKAKHEINEIESLLDLIEEDIEQILEELQE---------- 130 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 67889999999964322 233577778876643 3367777777888888888888888888888763
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHH-
Q 007622 101 TGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLH- 179 (595)
Q Consensus 101 ~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq- 179 (595)
|++....-+..+++++....+-.+.+. ...-.||.. .+ .=..+|+.+...+....
T Consensus 131 ---l~~~e~~nr~~v~~l~~~y~~~rk~ll-------------~~~~~~G~a--~~------~le~~l~~~e~~f~~f~~ 186 (569)
T PRK04778 131 ---LLESEEKNREEVEQLKDLYRELRKSLL-------------ANRFSFGPA--LD------ELEKQLENLEEEFSQFVE 186 (569)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCccccch--HH------HHHHHHHHHHHHHHHHHH
Confidence 445555555555555544433333221 111112100 00 00122222222222111
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCC----HHHHHHHHHHHH
Q 007622 180 --------------NEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNIS----DNILAKLNSTVE 241 (595)
Q Consensus 180 --------------~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS----~~~L~~L~~~~~ 241 (595)
......+..+..++..|=.|+..+.-.+...+.++-..+.....+.+.+. +..|..|+..+.
T Consensus 187 l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~ 266 (569)
T PRK04778 187 LTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQID 266 (569)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence 12223344445555556556665555444444442111111100122222 455677777666
Q ss_pred H----HHHHHHHHH-HHHHHHHHHHHHHHHHcCCChh
Q 007622 242 S----LEEEKKKRL-EKLHQLGKALTNLWNLMGTPYN 273 (595)
Q Consensus 242 ~----L~e~K~~R~-~kl~~L~~~L~~LW~~L~~p~e 273 (595)
. |....-... .+++.+...|..|.+.|..-..
T Consensus 267 ~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~ 303 (569)
T PRK04778 267 ENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVK 303 (569)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 554444443 3477899999999999865443
No 6
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.37 E-value=21 Score=43.55 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHH
Q 007622 227 NISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQA 306 (595)
Q Consensus 227 ~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~ 306 (595)
..++.++.+++..+..|..+...-..++..|...+..+=.++..-..+-..+......| ..-+.++...+
T Consensus 931 ~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~----------k~~~~~~k~~~ 1000 (1293)
T KOG0996|consen 931 KTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEI----------KKELRDLKSEL 1000 (1293)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 35777888888888888888888777788887777777666554333333443333222 11133444455
Q ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHH
Q 007622 307 EAEVKRLDQLKASK--MQELFLKKQKELEDICN 337 (595)
Q Consensus 307 e~Ev~RLe~lK~~~--mkelI~k~r~eL~elw~ 337 (595)
+..-+...+||+.+ |+..+++.+.+|.++=.
T Consensus 1001 e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~ 1033 (1293)
T KOG0996|consen 1001 ENIKKSENELKAERIDIENKLEAINGELNEIES 1033 (1293)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 55555555565544 44556666666666543
No 7
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.96 E-value=23 Score=41.40 Aligned_cols=243 Identities=9% Similarity=0.192 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHH
Q 007622 103 TLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSE-YDDSSTNVIVNENDLSLKKLEEYQIELQGLHNE 181 (595)
Q Consensus 103 tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~-~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~E 181 (595)
.+..++..+...+..+..+.+.-.+++..++.++..+-..+..... +.... --..++.+.+..++..++.+
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~G--------G~~~~~r~~Le~ei~~le~e 277 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEG--------GDLFEEREQLERQLKEIEAA 277 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888777777777777777776666655532110 00000 01345566777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 007622 182 KNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKL-HQLGKA 260 (595)
Q Consensus 182 K~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl-~~L~~~ 260 (595)
+.++.+.+..+.+.. -++.|....|..+...+.....-+ +.+.+ +.+...
T Consensus 278 ~~e~~~~l~~l~~~~---------------------------~p~~l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~~~ 328 (650)
T TIGR03185 278 RKANRAQLRELAADP---------------------------LPLLLIPNLLDSTKAQLQKEEQSQ--QNQLTQEELEER 328 (650)
T ss_pred HHHHHHHHHHHhccc---------------------------CCHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 776665533332211 144456667777777776655332 22323 334466
Q ss_pred HHHHHHHc---CCChhHHhhHHHHhh-hcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHH
Q 007622 261 LTNLWNLM---GTPYNDRRKFSHVTS-LLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQEL---FLKKQKELE 333 (595)
Q Consensus 261 L~~LW~~L---~~p~eer~~F~~~~~-~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkel---I~k~r~eL~ 333 (595)
...||..+ ..+.+..+....... ...+...+..-+-+++...+..+..-++.+..-....+..+ +.+...+|.
T Consensus 329 ~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~ 408 (650)
T TIGR03185 329 DKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELA 408 (650)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66677666 455444433333221 11111222222334566666666665555552222334444 346667777
Q ss_pred HHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007622 334 DICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSRKVIMEKVERW 394 (595)
Q Consensus 334 elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~k~Ile~vekw 394 (595)
++=.++.-.++.. .... -.+-++.++.+|.+++..+.....-++...+-
T Consensus 409 ~l~~~l~~~~~~e-~i~~-----------l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 409 EVDKKISTIPSEE-QIAQ-----------LLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHhcCCChH-HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776654421 1111 23455566666666666666555555444433
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.36 E-value=40 Score=42.78 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=36.5
Q ss_pred HHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 007622 334 DICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSRKVIMEKVERWMLAR 398 (595)
Q Consensus 334 elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~k~Ile~vekw~~~~ 398 (595)
..|..|+-+-+.......|..-+.+..-..-+.++..+..+..++..+..-..+-..|..|..+.
T Consensus 678 ~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~ 742 (1311)
T TIGR00606 678 SCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742 (1311)
T ss_pred CcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 36777766554444433344333321111123466666777777777777777766667776665
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.77 E-value=27 Score=39.58 Aligned_cols=96 Identities=16% Similarity=0.235 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 007622 38 QFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALRE 117 (595)
Q Consensus 38 e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~ 117 (595)
+.+|.+++..+-. +++|..+-.........+.+.++.+.+++..+-..+..-. ..+.+.-......++.
T Consensus 149 ~~er~~il~~l~~--~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~---------~~i~~~~~~~~~~i~~ 217 (562)
T PHA02562 149 APARRKLVEDLLD--ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYN---------KNIEEQRKKNGENIAR 217 (562)
T ss_pred hHhHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHH
Confidence 3456566665532 3456665555555555666666666777766666654211 0122222333455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007622 118 MRLRKEERVNQFRAVQAQIQKISAEIA 144 (595)
Q Consensus 118 Lrk~K~eR~~ef~~l~~qi~~lc~eL~ 144 (595)
++.+.+.-..+...+..++..+-.+|.
T Consensus 218 l~~e~~~l~~~~~~l~~~l~~l~~~i~ 244 (562)
T PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDELL 244 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666667777777777766663
No 10
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=16 Score=42.67 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 63 ANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAE 142 (595)
Q Consensus 63 ~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~e 142 (595)
.+..+.+|.+++..+...+..|..-|++-.+ + -++-+ +.++.+++..+-++-++..++.+|+.+-..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~----~--~tt~k-------t~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRV----D--ITTQK-------TEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhee----c--cchHH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888888888877775321 1 13444 445555555555555555555555555443
Q ss_pred h
Q 007622 143 I 143 (595)
Q Consensus 143 L 143 (595)
|
T Consensus 502 l 502 (1118)
T KOG1029|consen 502 L 502 (1118)
T ss_pred H
Confidence 3
No 11
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.04 E-value=61 Score=39.23 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 55 VYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQA 134 (595)
Q Consensus 55 vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~ 134 (595)
+|...|++++.--+-|+.+-.-++++|+.+-..=..- ..+..-++++++++.++.+.+..+.+-++-+.+...++.
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lrarse~~----tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGA----TLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccC----ChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4666677766666666666677777777766433111 123334567777888888888888887777777777776
Q ss_pred HHHHHHH
Q 007622 135 QIQKISA 141 (595)
Q Consensus 135 qi~~lc~ 141 (595)
+-..|-.
T Consensus 337 q~eqL~~ 343 (1195)
T KOG4643|consen 337 QKEQLDG 343 (1195)
T ss_pred HHHHhhh
Confidence 6655543
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.70 E-value=92 Score=40.85 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007622 43 KVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGE 90 (595)
Q Consensus 43 ~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge 90 (595)
+....++-++ ...+.-+++.+..++.+-..++....|+..+-..+++
T Consensus 1041 k~~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~ 1087 (1930)
T KOG0161|consen 1041 KAKRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLED 1087 (1930)
T ss_pred HHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4444556665 4556677778888888888888888888888877765
No 13
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=84.35 E-value=1.4e+02 Score=38.76 Aligned_cols=213 Identities=19% Similarity=0.256 Sum_probs=125.7
Q ss_pred HHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---C-CC-C--C
Q 007622 23 LLQELQMIWDEVGEDQFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGE---R-SL-P--G 95 (595)
Q Consensus 23 ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge---~-~~-~--~ 95 (595)
||.-+..+=+.+-..+..-+.++...+++-++-....|++..+.....-+.|..+..+...+-.-+-+ . +. | .
T Consensus 544 LL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss 623 (1822)
T KOG4674|consen 544 LLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSS 623 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCch
Confidence 34444444444444443346677777777666677777777777777777777777776665322211 1 00 0 0
Q ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHH
Q 007622 96 RPE--KMTGTLKEQLDSITPALREMRLRKEERVN----QFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLE 169 (595)
Q Consensus 96 ~~~--~~~~tL~eql~~l~~~LE~Lrk~K~eR~~----ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~ 169 (595)
..+ +.++++...+..+...++.++.++.++++ +|..++.++..|...++-.. ...+++.++++
T Consensus 624 ~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~-----------~~~~fA~ekle 692 (1822)
T KOG4674|consen 624 ALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLK-----------NELNLAKEKLE 692 (1822)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHH
Confidence 111 12233466777778888877777777664 56667777777776664322 12247889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHH
Q 007622 170 EYQIELQGLHNEKNDRLQRVEKYIDAVRS---LSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEE 246 (595)
Q Consensus 170 ~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~---L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~ 246 (595)
.|..-+..++.+...-.+....+-+.|+. ....+. . ....++..++.|...+..|+.+
T Consensus 693 ~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s-------~------------eL~~a~~k~~~le~ev~~LKqE 753 (1822)
T KOG4674|consen 693 NLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLS-------Q------------ELLSANEKLEKLEAELSNLKQE 753 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H------------HHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999998888333333334444433 221111 0 1123567788888889888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007622 247 KKKRLEKLHQLGKALTNLW 265 (595)
Q Consensus 247 K~~R~~kl~~L~~~L~~LW 265 (595)
+.-+..--..|......|.
T Consensus 754 ~~ll~~t~~rL~~e~~~l~ 772 (1822)
T KOG4674|consen 754 KLLLKETEERLSQELEKLS 772 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8777655444444444443
No 14
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=84.15 E-value=70 Score=35.02 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007622 302 IIEQAEAEVKRLDQLKA 318 (595)
Q Consensus 302 ~I~~~e~Ev~RLe~lK~ 318 (595)
-|+.+.+||+||...-.
T Consensus 254 hi~~l~~EveRlrt~l~ 270 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLS 270 (552)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777777665443
No 15
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.70 E-value=48 Score=38.03 Aligned_cols=124 Identities=22% Similarity=0.232 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 56 YRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQ 135 (595)
Q Consensus 56 y~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~q 135 (595)
|...+.+....-....-.+.++..++....+.+...| +.+..+...+..++..+..--..+.++...
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp-------------~~L~ele~RL~~l~~LkrKyg~s~e~l~~~ 330 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDP-------------ERLNEIEERLAQIKRLKRKYGASVEEVLEY 330 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4444444444444455555555555555555553111 456777777777777666666677777777
Q ss_pred HHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHcCCCc
Q 007622 136 IQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKN--------DRLQRVEKYIDAVRSLSATLGMES 207 (595)
Q Consensus 136 i~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~--------~Rl~kv~~l~~~I~~L~~~Lg~d~ 207 (595)
.+.+-.+|..... +...++.++.++..++++.. .|.+....+...|...+..|||+.
T Consensus 331 ~~~l~~eL~~l~~---------------~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~~ 395 (563)
T TIGR00634 331 AEKIKEELDQLDD---------------SDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAMEK 395 (563)
T ss_pred HHHHHHHHHHHhC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7777777754321 23344555555555444443 456666778889999999999973
No 16
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.81 E-value=97 Score=35.63 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHhHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 007622 18 TSCGYLLQELQMIWDEVGEDQ-FEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGR 96 (595)
Q Consensus 18 ~~c~~ll~eLq~IWdEIG~~e-~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~ 96 (595)
..+...+.+++.=|++|--.. .+-+..|.++|..+ .+-.+-.+...-..+.+.|..++.++..|..+|.+
T Consensus 56 Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~---~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~------ 126 (560)
T PF06160_consen 56 GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYA---DKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDE------ 126 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 344678999999999986322 33467888887763 44577778888888888999999999999888863
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007622 97 PEKMTGTLKEQLDSITPALREMRLRKEE 124 (595)
Q Consensus 97 ~~~~~~tL~eql~~l~~~LE~Lrk~K~e 124 (595)
|.+....-+..+++++....+
T Consensus 127 -------L~~~e~~nr~~i~~l~~~y~~ 147 (560)
T PF06160_consen 127 -------LLESEEKNREEIEELKEKYRE 147 (560)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544333
No 17
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.52 E-value=1.4e+02 Score=37.10 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007622 230 DNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMG 269 (595)
Q Consensus 230 ~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~ 269 (595)
+..+.-.+..+.+.+++-..-...+.....++.+||.+|.
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666677778888888888774
No 18
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.78 E-value=36 Score=38.63 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007622 232 ILAKLNSTVESLEEEKKK 249 (595)
Q Consensus 232 ~L~~L~~~~~~L~e~K~~ 249 (595)
.++.+...+..+..++..
T Consensus 387 ~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 387 ELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666666555443
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.28 E-value=1.3e+02 Score=36.04 Aligned_cols=223 Identities=15% Similarity=0.240 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCC
Q 007622 20 CGYLLQELQMIWDEVGEDQFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLG-------ERS 92 (595)
Q Consensus 20 c~~ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLg-------e~~ 92 (595)
.++++..+..+|. |+-.|++.+..-+.-=+.++..-.......-..+.-.|..++.+| ....+++ ...
T Consensus 26 l~~~~~~i~~fws----pElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~ 100 (775)
T PF10174_consen 26 LGSSMNSIKTFWS----PELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQ 100 (775)
T ss_pred HHHHHHhHhcccc----hhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcc
Confidence 3445555555564 455566555555444444444444444444446666677777777 5554443 111
Q ss_pred CCC----CCCCCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccc
Q 007622 93 LPG----RPEKMTGTL----------KEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIV 158 (595)
Q Consensus 93 ~~~----~~~~~~~tL----------~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~v 158 (595)
+.. ..+..-+.+ .-.+..++..++.+...-+.-.+.+....+.|.+|...|.+.... ..+ .
T Consensus 101 ~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~---~~~--~ 175 (775)
T PF10174_consen 101 YEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLS---AEA--E 175 (775)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---ccc--h
Confidence 110 000000000 011233444444444444444444555555666666666432211 000 0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHH
Q 007622 159 NENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNS 238 (595)
Q Consensus 159 d~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~ 238 (595)
.....-..++.++..++..|+..+..+-.....++..+|.-+ .+.+.+.. -..|+.
T Consensus 176 ~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~---~~~~~~a~---------------------t~alq~ 231 (775)
T PF10174_consen 176 EEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL---QMERDDAE---------------------TEALQT 231 (775)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hcCCCchh---------------------HHHHHH
Confidence 111223457788888888888777777666655666555443 22222211 112233
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCChhHHhh
Q 007622 239 TVESLEEEKKKRL-EKLHQLGKALTNLWNLMGTPYNDRRK 277 (595)
Q Consensus 239 ~~~~L~e~K~~R~-~kl~~L~~~L~~LW~~L~~p~eer~~ 277 (595)
.|+. ++-|...+ ..+.++-..|..|=..++++...|+.
T Consensus 232 ~ie~-Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~ 270 (775)
T PF10174_consen 232 VIEE-KDTKIASLERMLRDLEDEIYRLRSRGELSEADRDR 270 (775)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 3321 12222222 33566788888888888888776543
No 20
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.18 E-value=1.2e+02 Score=35.52 Aligned_cols=186 Identities=17% Similarity=0.234 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 59 KVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQK 138 (595)
Q Consensus 59 kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~ 138 (595)
.+.+.....+.+.+.++.++.++..+-..+..-.- .....++.+.+..+.+..+++.++.++.++.+++ ..
T Consensus 217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~--~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l-------~~ 287 (650)
T TIGR03185 217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK--KFRSEGGDLFEEREQLERQLKEIEAARKANRAQL-------RE 287 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 33444444444444444444444444443332100 0011245666666677777777666655554443 33
Q ss_pred HHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHc-CCCc-hhhhhhcc
Q 007622 139 ISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYI-DAVRSLSATL-GMES-SMIITKVH 215 (595)
Q Consensus 139 lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~-~~I~~L~~~L-g~d~-~~~~~evh 215 (595)
+++ +..++ . +...-|+.++.++...+.-+ +.+.+.+++ .....||..+ ++.. ......+-
T Consensus 288 l~~---~~~p~--------~----l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~ 350 (650)
T TIGR03185 288 LAA---DPLPL--------L----LIPNLLDSTKAQLQKEEQSQ--QNQLTQEELEERDKELLESLPKLALPAEHVKEIA 350 (650)
T ss_pred Hhc---ccCCH--------h----hhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 443 22221 1 46677888888888876433 445455555 6667777766 2221 11111110
Q ss_pred Ccc----c-cccc--cCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCC
Q 007622 216 PSL----S-ELFG--ISKNISDNILAKLNSTVESLEE----EKKKRLEKLHQLGKALTNLWNLMGT 270 (595)
Q Consensus 216 ~sl----~-~~~~--~~~~lS~~~L~~L~~~~~~L~e----~K~~R~~kl~~L~~~L~~LW~~L~~ 270 (595)
.-+ . +... -..+++...+..+...+..+.. ...+-..++..+..+|..+=..|..
T Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 351 AELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 0 0111 2456777777777666665442 2222233345555566655555544
No 21
>PRK11637 AmiB activator; Provisional
Probab=80.84 E-value=95 Score=34.24 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 57 RRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQI 136 (595)
Q Consensus 57 ~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi 136 (595)
...+.+.......+.+.|..+..++..+-..|. .+..+++.+...++.+..+-.+-..++...+..+
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~-------------~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLR-------------ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555544443 2334455555555555555444444444444444
Q ss_pred HHHHHHh
Q 007622 137 QKISAEI 143 (595)
Q Consensus 137 ~~lc~eL 143 (595)
......+
T Consensus 127 ~~rlra~ 133 (428)
T PRK11637 127 AAQLDAA 133 (428)
T ss_pred HHHHHHH
Confidence 4444433
No 22
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.09 E-value=1.2e+02 Score=34.76 Aligned_cols=112 Identities=18% Similarity=0.269 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHH
Q 007622 230 DNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAE 309 (595)
Q Consensus 230 ~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~E 309 (595)
.++|+.+...+..++.+-.....+++..+..=.++|..++.- |+.++.+
T Consensus 452 ~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E-------------------------------~e~le~~ 500 (581)
T KOG0995|consen 452 ASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKE-------------------------------IEKLEEE 500 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHH
Confidence 345666666666666666666677777777778888877653 3344444
Q ss_pred HHHHHHHHHHhHH---HHHHHHHHHHHHHHHhcCCCcchhhHH-HHHhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007622 310 VKRLDQLKASKMQ---ELFLKKQKELEDICNNSHMEIPSQSKM-DKITSLLNSGEIDHADLLTSMDEQISRAKE 379 (595)
Q Consensus 310 v~RLe~lK~~~mk---elI~k~r~eL~elw~~~~~~~~~~~~~-~~~~~~~~s~~~d~eelL~~~E~eI~~lk~ 379 (595)
|.-|.-.=...|+ +++...+-+++++-..|. +++... ..+|+.|+. ..++-..++.+|..++.
T Consensus 501 l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~---eer~ki~~ql~~~i~~----i~~~k~~iqs~le~~k~ 567 (581)
T KOG0995|consen 501 LLNLKLVLNTSMKEAEELVKSIELELDRMVATGE---EERQKIAKQLFAVIDQ----ISDFKVSIQSSLENLKA 567 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4444443333333 444455555555443332 233333 345555542 34555566666666655
No 23
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.00 E-value=1.9e+02 Score=36.56 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Q 007622 163 LSLKKLEEYQIELQGLHNEK---NDRLQRVEKYIDAVRSLSATL 203 (595)
Q Consensus 163 lS~~~L~~l~~~L~~Lq~EK---~~Rl~kv~~l~~~I~~L~~~L 203 (595)
+....|..++..+..|.++. ..+...|.+|..-+...|..+
T Consensus 768 vD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~ 811 (1201)
T PF12128_consen 768 VDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKV 811 (1201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 46677888888888888765 567788888888888888764
No 24
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.59 E-value=1.4e+02 Score=34.83 Aligned_cols=129 Identities=20% Similarity=0.283 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHH
Q 007622 40 EREKVLLDLEQECLDVYRR-------KVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSIT 112 (595)
Q Consensus 40 eR~~~l~~leqe~l~vy~~-------kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~ 112 (595)
+||....+|-.+. ..|.. .|....+.|......|..++..|+.|-..+..++.| +...+|. +....+.
T Consensus 12 Erd~ya~~lk~e~-a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~---~~pa~ps-e~E~~Lq 86 (617)
T PF15070_consen 12 ERDQYAQQLKEES-AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP---EPPAGPS-EVEQQLQ 86 (617)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc---cccccch-HHHHHHH
Confidence 5665555553332 23333 344555667777777888888888888888775522 2233454 4456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 113 PALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEK 191 (595)
Q Consensus 113 ~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~ 191 (595)
..++.|+++++.-..++......-+.|.. +.- --..+|.++...+..++....+|...+..
T Consensus 87 ~E~~~L~kElE~L~~qlqaqv~~ne~Ls~-L~~-----------------EqEerL~ELE~~le~~~e~~~D~~kLLe~ 147 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQAQVENNEQLSR-LNQ-----------------EQEERLAELEEELERLQEQQEDRQKLLEQ 147 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888766655555543333333322 100 12456777777777777766665554433
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=78.28 E-value=1.8e+02 Score=35.84 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 163 LSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSL 199 (595)
Q Consensus 163 lS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L 199 (595)
-..++++.++.-+..+..+++.=..++....+.|..+
T Consensus 334 ~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~ 370 (1074)
T KOG0250|consen 334 AQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKL 370 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665555444444444444444
No 26
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=77.40 E-value=1.9e+02 Score=35.74 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 167 KLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSL 199 (595)
Q Consensus 167 ~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L 199 (595)
.+..++..+..++.+...-...+..+...+..+
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l 831 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444444444444444
No 27
>PRK11637 AmiB activator; Provisional
Probab=77.31 E-value=1.2e+02 Score=33.43 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007622 104 LKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEI 143 (595)
Q Consensus 104 L~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL 143 (595)
+.++++.+..+++.+.+...+-..+..++..++..+-..|
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444444444444444444433
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.46 E-value=1.1e+02 Score=32.53 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC------CCCCCCCCHHHHHHHHHHH--HHHHHHHHH
Q 007622 52 CLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPG------RPEKMTGTLKEQLDSITPA--LREMRLRKE 123 (595)
Q Consensus 52 ~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~------~~~~~~~tL~eql~~l~~~--LE~Lrk~K~ 123 (595)
.|++|.-...+ |...|.+.+.-+..+-.++...+-|. .+++.-..+..++..++.. ++.-..-++
T Consensus 69 ~Lely~~~c~E-------L~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYe 141 (325)
T PF08317_consen 69 MLELYQFSCRE-------LKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYE 141 (325)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544444 55555566666666665554422111 1233334566677777665 555666678
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007622 124 ERVNQFRAVQAQIQKISAEI 143 (595)
Q Consensus 124 eR~~ef~~l~~qi~~lc~eL 143 (595)
=|++-+..++..+..-...|
T Consensus 142 WR~~ll~gl~~~L~~~~~~L 161 (325)
T PF08317_consen 142 WRMQLLEGLKEGLEENLELL 161 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777766644
No 29
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=74.77 E-value=2.2e+02 Score=35.12 Aligned_cols=12 Identities=8% Similarity=0.266 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 007622 368 TSMDEQISRAKE 379 (595)
Q Consensus 368 ~~~E~eI~~lk~ 379 (595)
..+..+|..|..
T Consensus 968 ~~l~~~i~~lg~ 979 (1179)
T TIGR02168 968 EEARRRLKRLEN 979 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 30
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.45 E-value=2.2e+02 Score=35.05 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 007622 112 TPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIEL-QGLHNEKNDRLQRVE 190 (595)
Q Consensus 112 ~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L-~~Lq~EK~~Rl~kv~ 190 (595)
.+.++.+++.-..+..++.++..++..+|..|-..-. .+ |.=.+.+..++.++ ..++.++.++..++.
T Consensus 336 d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~--------~~---d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~ 404 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK--------EV---DRLEKQIADLEKQTNNELGSELEERENKLE 404 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH---HHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3445556666666666677777777777776532110 01 23345666666666 666777777777666
Q ss_pred HHHHHHHHH
Q 007622 191 KYIDAVRSL 199 (595)
Q Consensus 191 ~l~~~I~~L 199 (595)
.+...+..+
T Consensus 405 ~L~~evek~ 413 (1074)
T KOG0250|consen 405 QLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHH
Confidence 666666555
No 31
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.36 E-value=64 Score=34.99 Aligned_cols=78 Identities=13% Similarity=0.259 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 55 VYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQA 134 (595)
Q Consensus 55 vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~ 134 (595)
=||..++++...+..+-..+.+.+..|..|-.+++..- + -+.-+.+.|..+++.+..+......++.+++.
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~l-----e----kI~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTL-----E----KIESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999888887421 1 13334556666666666666666666666666
Q ss_pred HHHHHHH
Q 007622 135 QIQKISA 141 (595)
Q Consensus 135 qi~~lc~ 141 (595)
+......
T Consensus 288 ~y~~~s~ 294 (359)
T PF10498_consen 288 KYKQASE 294 (359)
T ss_pred HHHHHhh
Confidence 6555554
No 32
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.00 E-value=1.3e+02 Score=32.07 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 007622 104 LKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKN 183 (595)
Q Consensus 104 L~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~ 183 (595)
|...+..+...+..++..+..-..++..++..... ++. ....+|..++..|..+..+..
T Consensus 168 L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e----~~~-----------------~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 168 LDKQLEQLDELLPKLRERKAELEEELENLKQLVEE----IES-----------------CDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhh-----------------cCHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544444444433222 110 234556666666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 007622 184 DRLQRVEKYIDAVRSL 199 (595)
Q Consensus 184 ~Rl~kv~~l~~~I~~L 199 (595)
.+...+.++..++..+
T Consensus 227 ~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 227 AKKKELAELQEELEEL 242 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555555
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=73.16 E-value=2.2e+02 Score=34.40 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHH
Q 007622 366 LLTSMDEQISRAKEEASSRKVIMEK 390 (595)
Q Consensus 366 lL~~~E~eI~~lk~~~~~~k~Ile~ 390 (595)
-++.++.++..++..+..-+.+.+.
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~ 507 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEA 507 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444433
No 34
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.01 E-value=1.1e+02 Score=31.02 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 55 VYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQA 134 (595)
Q Consensus 55 vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~ 134 (595)
-++.++.+..+.+++|+++++.++.|-. .|..|....+.|..+|...+.++..+..
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~------------------------~L~e~~kE~~~L~~Er~~h~eeLrqI~~ 60 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEK------------------------CLEEYRKEMEELLQERMAHVEELRQINQ 60 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477788888888888877766555432 3456777777788888888877777777
Q ss_pred HHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCchhhh
Q 007622 135 QIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSAT-LGMESSMII 211 (595)
Q Consensus 135 qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~-Lg~d~~~~~ 211 (595)
.|..+=+.|-. +....+..+..+..+..|+ .-+.+.|..+-.. ||+++...+
T Consensus 61 DIn~lE~iIkq------------------a~~er~~~~~~i~r~~eey-------~~Lk~~in~~R~e~lgl~~Lp~l 113 (230)
T PF10146_consen 61 DINTLENIIKQ------------------AESERNKRQEKIQRLYEEY-------KPLKDEINELRKEYLGLEPLPSL 113 (230)
T ss_pred HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCCCCcc
Confidence 77665443310 2233444445555555444 4455555566666 888876544
No 35
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=72.31 E-value=1.9e+02 Score=33.39 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007622 71 HQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYD 150 (595)
Q Consensus 71 ~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~ 150 (595)
.+-=..+++.+-.+|.-|++-|.|........+++..........++|+.+..++-.++.+++.+...+.........+.
T Consensus 79 tkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~ 158 (629)
T KOG0963|consen 79 TKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLE 158 (629)
T ss_pred HHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHH
Confidence 33334455666677788888665421111112222222233345666777777777777777776655554221111010
Q ss_pred CCCCcccccCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCC
Q 007622 151 DSSTNVIVNENDLSLKKL-EEYQIELQGLHNEKNDRLQRVEKYIDAVRSL-SATLGM 205 (595)
Q Consensus 151 ~~~~~~~vd~~dlS~~~L-~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L-~~~Lg~ 205 (595)
.......-..-..+.+.+ .+.......|+.+...+..++..+-..|..+ ...++.
T Consensus 159 ~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t 215 (629)
T KOG0963|consen 159 QLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDT 215 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000000001233333 2355566677777777777777777777777 344443
No 36
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.23 E-value=19 Score=42.64 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hcCCCcc
Q 007622 300 HNIIEQAEAEVKRLDQLKASKMQELFLKKQKELEDICN-NSHMEIP 344 (595)
Q Consensus 300 ~~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~eL~elw~-~~~~~~~ 344 (595)
..-+..++.+|..++ .|..+||+++.++-.+.-+.|- .++|-.+
T Consensus 605 ~~e~~~l~~~~~~~e-kr~~RLkevf~~ks~eFr~av~~llGyki~ 649 (722)
T PF05557_consen 605 EKEIAELKAELASAE-KRNQRLKEVFKAKSQEFREAVYSLLGYKID 649 (722)
T ss_dssp -HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSEEEE
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcceee
Confidence 345788888888874 7888899888887777766554 4466544
No 37
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=72.20 E-value=22 Score=33.77 Aligned_cols=106 Identities=13% Similarity=0.175 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCChhHHhhHHHHhhhc---------------------ccCccccCCCCCCc-HHHHHHHHHHHHH
Q 007622 255 HQLGKALTNLWNLMGTPYNDRRKFSHVTSLL---------------------SVSSAEVSEPGSLT-HNIIEQAEAEVKR 312 (595)
Q Consensus 255 ~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i---------------------~~s~~e~~~~~~LS-~~~I~~~e~Ev~R 312 (595)
+..+.+|.+||+.|++|.-.|..|.-...|= ++...-+.+...+| ..++.++..|-+-
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER~~ 82 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRREREM 82 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHHHH
Confidence 4567899999999999999888885444321 00000000111122 2355555555544
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHH
Q 007622 313 LDQLKASKMQELFLKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADL 366 (595)
Q Consensus 313 Le~lK~~~mkelI~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eel 366 (595)
|-..-..++ ...|-+.++-+-+++.+......++...+=++-.|.+.+
T Consensus 83 L~k~m~~rl------s~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv 130 (161)
T PF11995_consen 83 LAKQMQKRL------SREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHV 130 (161)
T ss_pred HHHHHHHhC------CHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHH
Confidence 422211111 246888999999999998877767666655443333333
No 38
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.70 E-value=2.4e+02 Score=33.52 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 123 EERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSAT 202 (595)
Q Consensus 123 ~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~ 202 (595)
.+|++++.+.++.+.+=|+.+....... .| .+|..+ .++..+|+.++.+...=...+.++...+......
T Consensus 599 aeR~e~a~d~Qe~L~~R~~~vl~~l~~~----~P-----~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~ 668 (717)
T PF10168_consen 599 AERYEEAKDKQEKLMKRVDRVLQLLNSQ----LP-----VLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQ 668 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----CC-----CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555554433211 11 157655 4555556655554322112222222222222111
Q ss_pred cCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 203 LGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKA 260 (595)
Q Consensus 203 Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~ 260 (595)
+. ... .+.. .+..|+..-...++..+.+.-++-.+-+++++.+...
T Consensus 669 i~----~~~---~~~~-----~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 669 IE----SQK---SPKK-----KSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred Hh----ccc---cccC-----CCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 000 0000 2456888888888888877766655555666555543
No 39
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=69.47 E-value=2.8e+02 Score=34.17 Aligned_cols=41 Identities=10% Similarity=0.227 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcCC
Q 007622 301 NIIEQAEAEVKRLDQLKAS------KMQELFLKKQKELEDICNNSHM 341 (595)
Q Consensus 301 ~~I~~~e~Ev~RLe~lK~~------~mkelI~k~r~eL~elw~~~~~ 341 (595)
++-+...+++..|..+=.. .|-.|.++.-.=|..|-+.|..
T Consensus 1298 ~~a~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~ 1344 (1439)
T PF12252_consen 1298 DTAQKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEA 1344 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555566666665554322 2334444444444444444433
No 40
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=67.35 E-value=1.8e+02 Score=31.08 Aligned_cols=194 Identities=16% Similarity=0.186 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCC-CCCCCCHHHHHHHHHHH----------HH
Q 007622 51 ECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLP---GRP-EKMTGTLKEQLDSITPA----------LR 116 (595)
Q Consensus 51 e~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~---~~~-~~~~~tL~eql~~l~~~----------LE 116 (595)
+...+|....++.-.. ....+..+..++....+.|+.|..- ..+ ..-+.+|.+.-+.++.+ +.
T Consensus 6 ~a~S~Y~E~ka~lvr~---~~~~~e~~~~~l~~~L~slnLP~~~~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~~~ 82 (337)
T cd09234 6 EASSLYSEEKAKLLRE---VVSEIEDKDEELDQFLSSLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTIKNLVEAMG 82 (337)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCChhhhhccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHH
Confidence 3466788777766333 3666788888999999999987531 111 11223455544444432 33
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 117 EMRLRK---EERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLS---LKKLEEYQIELQGLHNEKNDRLQRVE 190 (595)
Q Consensus 117 ~Lrk~K---~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS---~~~L~~l~~~L~~Lq~EK~~Rl~kv~ 190 (595)
+|...+ .+-+.+...+......=|..+- ..|+..+.+. .++ ..++..|+.+|..-..-= ..|.
T Consensus 83 ~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R--~k~G~~~~S~-----~~~~~l~~~~~k~~~~L~~A~~sD----~~l~ 151 (337)
T cd09234 83 ELSDVYQDVEAMLNEIESLLEEEELQEKEFQ--EAVGKRGSSI-----AHVTELKRELKKYKEAHEKASQSN----TELH 151 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHcCCCCCch-----hhHHHHHHHHHHHHHHHHHHHHhH----HHHH
Confidence 333222 2333333333333333233221 1122110000 011 234455555554444322 2344
Q ss_pred HHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 191 KYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALT 262 (595)
Q Consensus 191 ~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~ 262 (595)
...........+|+.+... +....|+.... ..+-....+..|+..+.+|+..+.+|...+.+|+..++
T Consensus 152 ~~~~~~~~~l~lL~~~~~~-l~~~iPs~~~~---~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 152 KAMNLHIANLKLLAGPLDE-LQKKLPSPSLL---DRPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHHHHcCcHHH-HHhhCCCcccc---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555556667655333 33334543211 11234567999999999999999999999998877654
No 41
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=67.28 E-value=2.5e+02 Score=32.77 Aligned_cols=106 Identities=14% Similarity=0.253 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007622 70 LHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEY 149 (595)
Q Consensus 70 L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~ 149 (595)
+..+|..+++|-+..+.-|... ...+.+....+...+..|+.+|..-+..+.++..+|..|-..+...+..
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~e---------~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~ 72 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKEE---------SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP 72 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 4455666666666665555421 1246778889999999999999999999999999999988877655422
Q ss_pred CCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 150 DDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYI 193 (595)
Q Consensus 150 ~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~ 193 (595)
. .|. .+|... ..++..+..|+++++.=..++...+
T Consensus 73 ~----~pa----~pse~E-~~Lq~E~~~L~kElE~L~~qlqaqv 107 (617)
T PF15070_consen 73 E----PPA----GPSEVE-QQLQAEAEHLRKELESLEEQLQAQV 107 (617)
T ss_pred c----ccc----cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 145443 4556666666666655444444433
No 42
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=67.13 E-value=2.2e+02 Score=32.00 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007622 230 DNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMG 269 (595)
Q Consensus 230 ~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~ 269 (595)
..-|+.+...++.+...-......+-.....+..+|+..+
T Consensus 322 e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~ 361 (473)
T PF14643_consen 322 EEELEKLDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHR 361 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666655555556666677777777887654
No 43
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=66.67 E-value=3.1e+02 Score=33.61 Aligned_cols=153 Identities=22% Similarity=0.306 Sum_probs=80.6
Q ss_pred ccccchHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Q 007622 14 ALLETSCGYLLQELQMIWDEVGEDQFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLL------S 87 (595)
Q Consensus 14 ~~~~~~c~~ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~------e 87 (595)
.+++++|+.+=..+..+--|+- |+...++++.++ ++..+..-..+.|++.+...+-...-. +
T Consensus 173 ~hL~velAdle~kir~LrqElE----EK~enll~lr~e--------Lddleae~~klrqe~~e~l~ea~ra~~yrdelda 240 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELE----EKFENLLRLRNE--------LDDLEAEISKLRQEIEEFLDEAHRADRYRDELDA 240 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3457777777666665555542 222334444333 333344445555555544444332221 2
Q ss_pred hCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCC
Q 007622 88 LGERSLPGRPEKMTGTLKEQ---LDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLS 164 (595)
Q Consensus 88 Lge~~~~~~~~~~~~tL~eq---l~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS 164 (595)
|.+... .++ .+-++. ...|..++++|+.--.--+.++.=+.+|++.+-+.=.+.. |
T Consensus 241 lre~ae--r~d---~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~t---------------l- 299 (1195)
T KOG4643|consen 241 LREQAE--RPD---TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGAT---------------L- 299 (1195)
T ss_pred HHHhhh--cCC---CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCC---------------h-
Confidence 221110 111 122233 3458899999998888888889999999999988433311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 165 LKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSL 199 (595)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L 199 (595)
...+=.|+..++.|+.+.+-=..+..++..++..|
T Consensus 300 eseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 300 ESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 12344455555555555555555555555544444
No 44
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=66.57 E-value=4.1e+02 Score=34.92 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 50 QECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQF 129 (595)
Q Consensus 50 qe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef 129 (595)
.+.++.|++.++........+...|...+..+..+..+|-. -...++.+...|+.|+.++.-+..-+
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~-------------a~~k~~~le~ev~~LKqE~~ll~~t~ 761 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLS-------------ANEKLEKLEAELSNLKQEKLLLKETE 761 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999998863 22578899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 007622 130 RAVQAQIQKISAEIAG 145 (595)
Q Consensus 130 ~~l~~qi~~lc~eL~~ 145 (595)
..+..+...||.+..+
T Consensus 762 ~rL~~e~~~l~~e~~~ 777 (1822)
T KOG4674|consen 762 ERLSQELEKLSAEQES 777 (1822)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997643
No 45
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.35 E-value=3.3e+02 Score=33.38 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 007622 305 QAEAEVKRLDQLKASKMQELFLKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSR 384 (595)
Q Consensus 305 ~~e~Ev~RLe~lK~~~mkelI~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~ 384 (595)
++..|++++...|.. ..++|.|+.+.-+.++..|. .+|.+ |- +..+.+|+..+..=-..|+.+-..+
T Consensus 906 ~~dKe~Ek~~~rk~~-----Ll~KreE~~ekIr~lG~Lp~--daf~k----y~--~~~~~el~kkL~~~neelk~ys~VN 972 (1200)
T KOG0964|consen 906 NFDKELEKLVRRKHM-----LLKKREECCEKIRELGVLPE--DAFEK----YQ--DKKSKELMKKLHRCNEELKGYSNVN 972 (1200)
T ss_pred hhhHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCch--HHHHH----hc--cCCHHHHHHHHHHHHHHHhhcchhh
Confidence 344677776655554 33478887777777788875 34543 22 3447888888888788888888888
Q ss_pred hHHHHHHHHH
Q 007622 385 KVIMEKVERW 394 (595)
Q Consensus 385 k~Ile~vekw 394 (595)
|--|+-+..+
T Consensus 973 KkAldQf~nf 982 (1200)
T KOG0964|consen 973 KKALDQFVNF 982 (1200)
T ss_pred HHHHHHHHHH
Confidence 8776655444
No 46
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.72 E-value=79 Score=31.83 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH
Q 007622 230 DNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMGTPYND 274 (595)
Q Consensus 230 ~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~ee 274 (595)
++.|..|.....+|++....+..++.+|.....+|-..+..|.++
T Consensus 169 ~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~ 213 (290)
T COG4026 169 QERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEE 213 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHH
Confidence 445778888888888888888878888888888888888887764
No 47
>PRK02224 chromosome segregation protein; Provisional
Probab=64.17 E-value=3.3e+02 Score=32.93 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007622 364 ADLLTSMDEQISRAKEEASSRKVIMEKVERW 394 (595)
Q Consensus 364 eelL~~~E~eI~~lk~~~~~~k~Ile~vekw 394 (595)
++.|..++.++..+++.....+.......+.
T Consensus 411 e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 441 (880)
T PRK02224 411 EDFLEELREERDELREREAELEATLRTARER 441 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776666666555554444
No 48
>PF13514 AAA_27: AAA domain
Probab=63.08 E-value=3.9e+02 Score=33.46 Aligned_cols=103 Identities=21% Similarity=0.289 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhh-----hhhccCccccccccCCCCCHHHHHHHHHHH
Q 007622 166 KKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMI-----ITKVHPSLSELFGISKNISDNILAKLNSTV 240 (595)
Q Consensus 166 ~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~-----~~evh~sl~~~~~~~~~lS~~~L~~L~~~~ 240 (595)
+.+......+..++.....-...+..+...+..|+..++.+.... +..+..-+... .-....+..+...+
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a-----~~~~~~~~~l~~~~ 810 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEA-----REAQEERERLQEQL 810 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 455555566777777777777888889999999999998754332 11111111100 01133456667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Q 007622 241 ESLEEEKKKRLEKLHQLGKALTNLWNLMGTPYN 273 (595)
Q Consensus 241 ~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~e 273 (595)
..++....+-...+..+...+..|+...++...
T Consensus 811 ~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~ 843 (1111)
T PF13514_consen 811 EELEEELEQAEEELEELEAELAELLEQAGVEDE 843 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 777777777777788888889999988888654
No 49
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=62.92 E-value=2.6e+02 Score=31.31 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 113 PALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKY 192 (595)
Q Consensus 113 ~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l 192 (595)
..+..+..+...-..++..++.++..+-..+.+.++.......+. ...-..+|.+++.++..+...+....-+|..+
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~---~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l 280 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVA---NSELDGRIEALEKQLDALRLRYTDKHPDVIAT 280 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccC---CCchHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 344444444444444556666666677666665443211101111 11225779999999999999888888888888
Q ss_pred HHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 193 IDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNL 264 (595)
Q Consensus 193 ~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~L 264 (595)
...|..+-..+.-........ + ......+..+..|...+..++.....-..++..+...+..+
T Consensus 281 ~~qi~~l~~~l~~~~~~~~~~--~-------~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 281 KREIAQLEEQKEEEGSAKNGG--P-------ERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERL 343 (498)
T ss_pred HHHHHHHHHHHHhhccccccC--c-------ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888866653211111000 0 01122334455566666555555555555566666666555
No 50
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=62.31 E-value=2.5e+02 Score=30.98 Aligned_cols=278 Identities=15% Similarity=0.194 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---CCCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 66 SRARLHQELAESEAEFTHLLLSLGERSLPGR---PEKMTGTLKEQ---------LDSITPALREMRLRKEERVNQFRAVQ 133 (595)
Q Consensus 66 ~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~---~~~~~~tL~eq---------l~~l~~~LE~Lrk~K~eR~~ef~~l~ 133 (595)
.-..+...+....++|......|...+++++ +.....+|.+= ...+...+.++..-+..--..+..+.
T Consensus 74 ~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~~~~~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~ 153 (412)
T PF04108_consen 74 DFKDLVKELDPADARLEQTLDMLRNTKVPPFFRPPGEEPKTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFD 153 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCCccccCCCCCCCcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455666777778888888888887665532 12333455432 22333334444333333333333233
Q ss_pred HHHHHHHHHhcCCCC--CCC----CCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---
Q 007622 134 AQIQKISAEIAGLSE--YDD----SSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLG--- 204 (595)
Q Consensus 134 ~qi~~lc~eL~~~~~--~~~----~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg--- 204 (595)
..+..+...+..... +.. ...........+|..-+..+-..+..|..+...=++-+..+-..+........
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~ 233 (412)
T PF04108_consen 154 NDLRKLKKQLINKRLKDYELLAPFQSSLGSSPSSSSSNPLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEP 233 (412)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccccccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 333333333311000 000 00000000011134456666666777777777776666666666666655441
Q ss_pred CCchhh-------------hhhc----cCccccccc----------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 205 MESSMI-------------ITKV----HPSLSELFG----------ISKNISDNILAKLNSTVESLEEEKKKRLEKLHQL 257 (595)
Q Consensus 205 ~d~~~~-------------~~ev----h~sl~~~~~----------~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L 257 (595)
+++.+. ++.| +..+..+.. ............+...+..|..-+. ++...-..
T Consensus 234 ~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~yl~~ 312 (412)
T PF04108_consen 234 MSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGE-RLPSYLAA 312 (412)
T ss_pred CChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 111110 1111 100000000 0112223333444445555555555 55555555
Q ss_pred HHHHHHHHHHcCCCh----hHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007622 258 GKALTNLWNLMGTPY----NDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELFLKKQKELE 333 (595)
Q Consensus 258 ~~~L~~LW~~L~~p~----eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~eL~ 333 (595)
...+...|..+..+. ++-..+..++.++ ......+=.||.|=... ..+|+.++.....+|.
T Consensus 313 ~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F--------------~~aY~~LL~Ev~RRr~~-~~k~~~i~~~~~eeL~ 377 (412)
T PF04108_consen 313 FHDFEERWEEEKESIQAYIDELEQLCEFYEGF--------------LSAYDSLLLEVERRRAV-RDKMKKIIREANEELD 377 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 666777777554432 3334444444433 13666677888887766 6679999999999999
Q ss_pred HHHHhcCCCcchhhHHHHHhhhccCCCCChHHHH
Q 007622 334 DICNNSHMEIPSQSKMDKITSLLNSGEIDHADLL 367 (595)
Q Consensus 334 elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL 367 (595)
.+.+ +++..+..|..- -|+|=|+|++
T Consensus 378 ~l~e------eE~~~Re~F~~e--~GdyLP~diw 403 (412)
T PF04108_consen 378 KLRE------EEQRRREAFLKE--YGDYLPEDIW 403 (412)
T ss_pred HHHH------HHHHHHHHHHHH--ccCcCChhhC
Confidence 8877 444555555443 3667677764
No 51
>PLN03188 kinesin-12 family protein; Provisional
Probab=61.32 E-value=4.3e+02 Score=33.38 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 007622 233 LAKLNSTVESLE-----EEKKKRLEKLHQLGKALTNL 264 (595)
Q Consensus 233 L~~L~~~~~~L~-----e~K~~R~~kl~~L~~~L~~L 264 (595)
|.+++..+..++ .+|.-.++.|++|+.+|+.+
T Consensus 969 ~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~ 1005 (1320)
T PLN03188 969 LKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYY 1005 (1320)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhh
Confidence 445555555433 45566667888888877765
No 52
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.19 E-value=1.2e+02 Score=27.67 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 45 LLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHL 84 (595)
Q Consensus 45 l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L 84 (595)
|.++|-|+. .++..+......|+.+.++|-.+-.+...+
T Consensus 25 lr~~E~E~~-~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 25 LRRLEGELA-SLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 345555555555555555555544444444
No 53
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.03 E-value=4e+02 Score=32.93 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCC---------CC----hHHHHHHHHHHHHHHHHHHhhchHH
Q 007622 321 MQELFLKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGE---------ID----HADLLTSMDEQISRAKEEASSRKVI 387 (595)
Q Consensus 321 mkelI~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~---------~d----~eelL~~~E~eI~~lk~~~~~~k~I 387 (595)
+...|+++..|...+-..|-++.= .-|+-+|. +| +.++. +...|....+......|-
T Consensus 882 ~es~ie~~~~er~~lL~~ckl~~I--------~vPl~~gs~~d~~~~ieidy~~L~~~y~--L~~kl~e~~~~l~~~~Pn 951 (1141)
T KOG0018|consen 882 IESKIERKESERHNLLSKCKLEDI--------EVPLSSGSMDDIVIGIEIDYSGLPREYK--LQQKLEEKQSVLNRIAPN 951 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHhhhccc--------cccccCCCccccceecccccccccHHHH--HHHHHHHHHHHHHHhCcc
Confidence 567778888888888887766521 11222111 11 33333 666677777777777777
Q ss_pred HHHHHHHHHH
Q 007622 388 MEKVERWMLA 397 (595)
Q Consensus 388 le~vekw~~~ 397 (595)
+..+++...+
T Consensus 952 ~kA~~~~d~v 961 (1141)
T KOG0018|consen 952 LKALERLDEV 961 (1141)
T ss_pred hHHHhhhhhH
Confidence 7777777333
No 54
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.70 E-value=89 Score=29.78 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 161 NDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSA 201 (595)
Q Consensus 161 ~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~ 201 (595)
.++|.+.+..+...+..|+.+...-...+..+..++..|.+
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999988888887777777777733
No 55
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.69 E-value=4e+02 Score=32.79 Aligned_cols=279 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 007622 20 CGYLLQELQMIWDEVGEDQFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEK 99 (595)
Q Consensus 20 c~~ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~ 99 (595)
|..+=++|..--.++-.-..-.+..=+..-..-+..|.+-|.+....-......+..|..++..|-.-+.+.. ..
T Consensus 710 f~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~-----~~ 784 (1174)
T KOG0933|consen 710 FRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK-----AN 784 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----hh
Q ss_pred CCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHH
Q 007622 100 MTGTLKEQ---LDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQ 176 (595)
Q Consensus 100 ~~~tL~eq---l~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~ 176 (595)
...-|.++ ++.+...+++-.+.-+.|..+|..++.+++.+-.++.. ....|..+...+.
T Consensus 785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~------------------~k~~l~~~~~~~~ 846 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISS------------------LKQQLEQLEKQIS 846 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhh--ccCccccccc---cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007622 177 GLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITK--VHPSLSELFG---ISKNISDNILAKLNSTVESLEEEKKKRL 251 (595)
Q Consensus 177 ~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~e--vh~sl~~~~~---~~~~lS~~~L~~L~~~~~~L~e~K~~R~ 251 (595)
.|..+...-..++...-......-..|...-.....- ....+...+. ...+.....+.+|...+.+++.++....
T Consensus 847 ~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~ 926 (1174)
T KOG0933|consen 847 SLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANAR 926 (1174)
T ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007622 252 EKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELFLKKQKE 331 (595)
Q Consensus 252 ~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~e 331 (595)
++++.+..+..-|= ++.+.|......+ ++...+...+..++.+|+.-+...=+.+--+...-
T Consensus 927 k~v~~l~~k~~wi~-------~ek~~fgk~gt~y-----------Df~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~m 988 (1174)
T KOG0933|consen 927 KEVEKLLKKHEWIG-------DEKRLFGKKGTDY-----------DFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDM 988 (1174)
T ss_pred HHHHHHHHhccchh-------HHHHhhcCCCCcc-----------ccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHH
Q ss_pred HHHHHHhc
Q 007622 332 LEDICNNS 339 (595)
Q Consensus 332 L~elw~~~ 339 (595)
|+..=+++
T Consensus 989 le~~E~~~ 996 (1174)
T KOG0933|consen 989 LERAEEKE 996 (1174)
T ss_pred HHHHHHHH
No 56
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.74 E-value=4.8e+02 Score=33.38 Aligned_cols=108 Identities=14% Similarity=0.200 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 54 DVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQ 133 (595)
Q Consensus 54 ~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~ 133 (595)
+.|....+.....+....+.|..++.++..+-. .+++...++..+..++.+.+.-..+..++.
T Consensus 182 ~~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ir~~l~~~q~kie~~~~~~~~le 244 (1311)
T TIGR00606 182 TRYIKALETLRQVRQTQGQKVQEHQMELKYLKQ-----------------YKEKACEIRDQITSKEAQLESSREIVKSYE 244 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777777778777777776654 446666677777777666555555555555
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 134 AQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYI 193 (595)
Q Consensus 134 ~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~ 193 (595)
.++..+...+...- -....+..+...+..+...+..+...+..+.
T Consensus 245 ~ei~~l~~~~~~l~---------------~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~ 289 (1311)
T TIGR00606 245 NELDPLKNRLKEIE---------------HNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289 (1311)
T ss_pred HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665555432110 1334456666666666555554444433333
No 57
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=59.26 E-value=4.6e+02 Score=33.05 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=10.3
Q ss_pred hhHHHHHHHHhhhh-hhHHHHHHH
Q 007622 423 NLRRAERARVTVKK-IPALVDSLF 445 (595)
Q Consensus 423 ~LlreEK~Rk~i~K-lPkl~~~L~ 445 (595)
.+-.-+++++.|.. +-.+....+
T Consensus 985 ~~~dl~~a~~~l~~~i~~~d~~~~ 1008 (1163)
T COG1196 985 QREDLEEAKEKLLEVIEELDKEKR 1008 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 444444433
No 58
>PF13514 AAA_27: AAA domain
Probab=59.11 E-value=4.5e+02 Score=32.91 Aligned_cols=197 Identities=19% Similarity=0.254 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 55 VYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQA 134 (595)
Q Consensus 55 vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~ 134 (595)
..+..++++....+.+...++.+.+....+|..+|. |.+ | ..+..++......++........| .++..+..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~-p~~--p----~~~~~Wl~~~~~~~~~~~~~~~~~-~~~~~~~~ 632 (1111)
T PF13514_consen 561 EARARLARAQARLAAAEAALAALEAAWAALWAAAGL-PLS--P----AEMRDWLARREAALEAAEELRAAR-AELEALRA 632 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC--h----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345556666666666667777777777778888883 221 2 356666655554444443333222 34444444
Q ss_pred HHHHHHHHhcCCCCC-CCCCC-cccccC-------CCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 007622 135 QIQKISAEIAGLSEY-DDSST-NVIVNE-------NDLSLKKLEEYQIELQGLHN-------EKNDRLQRVEKYIDAVRS 198 (595)
Q Consensus 135 qi~~lc~eL~~~~~~-~~~~~-~~~vd~-------~dlS~~~L~~l~~~L~~Lq~-------EK~~Rl~kv~~l~~~I~~ 198 (595)
....++..|...... +...+ .+.+.. ..=...++..+...+..++. +...-...+.........
T Consensus 633 ~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 712 (1111)
T PF13514_consen 633 RRAAARAALAAALAALGPAEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQE 712 (1111)
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443321100 00000 011100 00011222333333333333 333334444555555556
Q ss_pred HHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 007622 199 LSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLN---STVESLEEEKKKRLEKLHQLGKALTNLWNLMGTP 271 (595)
Q Consensus 199 L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~---~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p 271 (595)
.+..+|+++.-....+.. .-+.+..+. ..+..++.....-...+..+...+..||..++.+
T Consensus 713 ~l~~~gL~~~~~~~~~~~------------~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~ 776 (1111)
T PF13514_consen 713 ALAELGLPADASPEEALE------------ALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPD 776 (1111)
T ss_pred HHHhCCCCCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 666777765532222111 112233333 3333444433334455778899999999999874
No 59
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=59.10 E-value=4.3e+02 Score=32.66 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhch
Q 007622 368 TSMDEQISRAKEEASSRK 385 (595)
Q Consensus 368 ~~~E~eI~~lk~~~~~~k 385 (595)
+.+..+|..++.......
T Consensus 954 ~~l~~~l~~l~~~i~~l~ 971 (1164)
T TIGR02169 954 EDVQAELQRVEEEIRALE 971 (1164)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 345555665555544443
No 60
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=58.55 E-value=1.1e+02 Score=28.19 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-chhhhhhccCccccccccCCCCCHHHHHHHH
Q 007622 163 LSLKKLEEYQIEL----QGLHNEKNDRLQRVEKYIDAVRSLSATLGME-SSMIITKVHPSLSELFGISKNISDNILAKLN 237 (595)
Q Consensus 163 lS~~~L~~l~~~L----~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d-~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~ 237 (595)
+|.++|+.++.+- .-.|.|.-....|+..|.+.....-..+..+ +...+.. +|+|.+-- .-.+|+++++..+-
T Consensus 10 isa~~L~glRtqc~~s~eltqqeIr~lE~KLvK~fSkQL~~K~k~~~~~~~~~l~~-yP~l~~WL-~vVgl~~~~i~~i~ 87 (129)
T PF13543_consen 10 ISAEQLEGLRTQCATSSELTQQEIRTLEGKLVKYFSKQLQCKAKVAERERAAELNS-YPSLRQWL-RVVGLRPESIQAIL 87 (129)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCchhccc-CCcHHHHh-hhcCCCHHHHHHHH
Confidence 4556666666554 3345555566666666666655544343322 2222322 45553311 35679999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHh
Q 007622 238 STVESLEEEKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVT 282 (595)
Q Consensus 238 ~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~ 282 (595)
..+..|.....-..+++.+ +-+.++...||+..|....
T Consensus 88 ~~~~tLe~Llemsd~el~~-------~l~~~g~~~EE~rRL~~Al 125 (129)
T PF13543_consen 88 SKVLTLEALLEMSDEELKE-------ILNRCGAREEECRRLCRAL 125 (129)
T ss_pred HhhcCHHHHHhCCHHHHHH-------HHHHhCCCHHHHHHHHHHH
Confidence 6677777666555554443 4445788888888887664
No 61
>PRK03918 chromosome segregation protein; Provisional
Probab=58.25 E-value=4e+02 Score=32.06 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007622 228 ISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLM 268 (595)
Q Consensus 228 lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L 268 (595)
++...++.+...+..++.....-...+..+...|..|...+
T Consensus 656 ~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i 696 (880)
T PRK03918 656 YSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696 (880)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666655556666666666666554
No 62
>PRK10869 recombination and repair protein; Provisional
Probab=57.76 E-value=2.6e+02 Score=32.08 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 56 YRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQ 135 (595)
Q Consensus 56 y~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~q 135 (595)
|+..+.+....-..+.-.+.++..++....+.+...| +.|..+...+..++.-|..=-..+.++..-
T Consensus 259 ~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp-------------~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~ 325 (553)
T PRK10869 259 MDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDP-------------NRLAELEQRLSKQISLARKHHVSPEELPQH 325 (553)
T ss_pred hCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH-------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q ss_pred HHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHcCCC
Q 007622 136 IQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEK--------NDRLQRVEKYIDAVRSLSATLGME 206 (595)
Q Consensus 136 i~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK--------~~Rl~kv~~l~~~I~~L~~~Lg~d 206 (595)
.+.+-.+|..... +.+.++.|+.++..+.++. ..|.+....+...|......|||+
T Consensus 326 ~~~l~~eL~~L~~---------------~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 326 HQQLLEEQQQLDD---------------QEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHhhC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
No 63
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=57.28 E-value=2.9e+02 Score=30.11 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHH
Q 007622 183 NDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEE 245 (595)
Q Consensus 183 ~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e 245 (595)
..-+.++.++=..|+.|=..||+++.. .+.++... .+.+| ..+|+.|...+.-|..
T Consensus 205 ~~~la~~a~LE~RL~~LE~~lG~~~~~-----~~~l~~~~-~~~~l-~~~l~~L~~~lslL~~ 260 (388)
T PF04912_consen 205 SQQLARAADLEKRLARLESALGIDSDK-----MSSLDSDT-SSSPL-LPALNELERQLSLLDP 260 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCccc-----cccccccC-CcchH-HHHHHHHHHHHHhcCH
Confidence 344667888888888888899984432 12332211 13333 2346666666666643
No 64
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=57.20 E-value=2.7e+02 Score=29.78 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCCCCCCCCHH--HHH---------HHHHHHHHH
Q 007622 52 CLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLP---GRPEKMTGTLK--EQL---------DSITPALRE 117 (595)
Q Consensus 52 ~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~---~~~~~~~~tL~--eql---------~~l~~~LE~ 117 (595)
.+.+|+...++.-... ...+..+..++.....+|+.|..- ..+...+.+|. +.. +.|...+..
T Consensus 7 a~s~Y~erk~~lv~~e---~~~l~~at~~~~~~L~~lnLP~sl~al~~~~~lp~sl~~~~~~~~v~~~gG~~~l~~~l~~ 83 (339)
T cd09238 7 ALSKYTEMVDELIRTE---ADRLAAASDEARVALREMELPETLIALDGGASLPGDLGLDEEVEAVQISGGLAALEGELPR 83 (339)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCcHHHHHhcCCCCCCCccchHHHHHHHHHcccHHHHHHHHHH
Confidence 5678988888875433 377888899999999999876311 01122233454 432 244455555
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCCCCCCCcccccCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 118 MRLRKEERVNQFRA---VQAQIQKISAEIAGLSEYDDSSTNVIVNENDLS---LKKLEEYQIELQGLHNEKNDRLQRVEK 191 (595)
Q Consensus 118 Lrk~K~eR~~ef~~---l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS---~~~L~~l~~~L~~Lq~EK~~Rl~kv~~ 191 (595)
|.+.+..-...+.+ +......=|..+- ..|+..-..+ ....++ -.++..|+..|+.-..-= ..|..
T Consensus 84 L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R--~kyg~rWtr~--pS~~~~~~l~~~i~~~r~~L~~A~~sD----~~v~~ 155 (339)
T cd09238 84 LRELRRVCTELLAAAQESLEAEATEDSAAR--TQYGTAWTRP--PSATLTKNLWERLNRFRVNLEQAGDSD----ESLRR 155 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHH
Confidence 55555444444433 3333333344321 1132111111 001122 234444444444332222 22344
Q ss_pred HHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 192 YIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALT 262 (595)
Q Consensus 192 l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~ 262 (595)
....+.....+|+-+ .+....|+...+.....+=....+..|+..+..|+..|.+|...++.|.....
T Consensus 156 k~~~~~~~l~~L~~~---~~~~~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~ 223 (339)
T cd09238 156 RIEDAMDGMLILDDE---PAAAAAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKR 223 (339)
T ss_pred HHHHHHHHHHhcCcH---hhHhhCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555566422 22233444211000000011456899999999999999999876666655433
No 65
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=57.02 E-value=2.4e+02 Score=29.06 Aligned_cols=117 Identities=16% Similarity=0.253 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCC
Q 007622 71 HQELAESEAEFTHLLLSLGERSLPGRP-EKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISA---EIAGL 146 (595)
Q Consensus 71 ~q~Ia~~~~El~~L~~eLge~~~~~~~-~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~---eL~~~ 146 (595)
...+..-..+...+....|.. ....| .....++...+..|+..|+....--..=...|.....-|.-||. +|...
T Consensus 49 ~~~L~~E~~ed~~~r~~~g~~-W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~ 127 (296)
T PF13949_consen 49 EEMLDEEEREDEQLRAKYGER-WTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEAS 127 (296)
T ss_dssp HHHHHHHHHHHHHHHHHSTTT-CGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhh
Confidence 333444445555666666652 11100 11123666777777777777776666666666666555554443 11100
Q ss_pred CCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 147 SEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYID 194 (595)
Q Consensus 147 ~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~ 194 (595)
.+.. .+ . ..+-....+..++..+..+..-+.+|...+..+..
T Consensus 128 lp~~----~~-~-~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 128 LPSS----SP-S-DSPQVSEVIRQLRELLNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp S--B---------SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----Cc-c-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0 11123566677777777777777777666555554
No 66
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=56.52 E-value=3.2e+02 Score=30.40 Aligned_cols=171 Identities=19% Similarity=0.259 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCC-CHHHHHHHHHHHHHH
Q 007622 165 LKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNI-SDNILAKLNSTVESL 243 (595)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~l-S~~~L~~L~~~~~~L 243 (595)
...+..++..|..|+.-+..-...+...+..|..-... +.. . ++.. ....-..+..-...|
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~--------~k~-------~---s~~~~~~~~R~~~~~~k~~L 211 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKK--------VKS-------A---STNASGDSNRAYMESGKKKL 211 (424)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-------h---hccccccchhHHHHHHHHHH
Confidence 45677777777777666665555444333333222111 100 0 1111 233344555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHH
Q 007622 244 EEEKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQE 323 (595)
Q Consensus 244 ~e~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mke 323 (595)
...-..-..++.+|...+..|-. ...+ +++ ..+..-++.+..++.++..-=. .|+.
T Consensus 212 ~~~sd~Ll~kVdDLQD~VE~LRk----------DV~~--Rgv-----------Rp~~~qle~v~kdi~~a~~~L~-~m~~ 267 (424)
T PF03915_consen 212 SEESDRLLTKVDDLQDLVEDLRK----------DVVQ--RGV-----------RPSPKQLETVAKDISRASKELK-KMKE 267 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHH--H----------------HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHH--cCC-----------cCCHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 66655556667777766665533 2222 222 1255778888888887765433 4899
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007622 324 LFLKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSRKVIMEKVERW 394 (595)
Q Consensus 324 lI~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~k~Ile~vekw 394 (595)
+|...+--...+|.. +.+.+.. -.+.|...|.-+..|++-+..-..+|.+|+++
T Consensus 268 ~i~~~kp~WkKiWE~---------EL~~V~e--------EQqfL~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 268 YIKTEKPIWKKIWES---------ELQKVCE--------EQQFLKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHH---------HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888999964 3332211 45778888888999999999999999999986
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.67 E-value=5.3e+02 Score=32.66 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCChhH
Q 007622 225 SKNISDNILAKLNSTVESLEEEKKK---RLEKLHQLGKALTNLWNLMGTPYND 274 (595)
Q Consensus 225 ~~~lS~~~L~~L~~~~~~L~e~K~~---R~~kl~~L~~~L~~LW~~L~~p~ee 274 (595)
..++.+..|..|+..+..|+.+-.. +...+.++..-+.++|..++--.+.
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~ 817 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREE 817 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 6678888999999999988765443 3456889999999999986643333
No 68
>PRK09039 hypothetical protein; Validated
Probab=55.19 E-value=3e+02 Score=29.62 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhCCCCCCCCCCCCCCCHHHHHHHHHH
Q 007622 41 REKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFT-------HLLLSLGERSLPGRPEKMTGTLKEQLDSITP 113 (595)
Q Consensus 41 R~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~-------~L~~eLge~~~~~~~~~~~~tL~eql~~l~~ 113 (595)
++..|.+++.++.+ +-..+.-......++...|+.+++++. .|-..+... .....++..++..+..
T Consensus 51 ~~~eL~~L~~qIa~-L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~------~~~~~~~~~~~~~l~~ 123 (343)
T PRK09039 51 KDSALDRLNSQIAE-LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL------AGAGAAAEGRAGELAQ 123 (343)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhcchHHHHHHHHHH
Confidence 45555555555433 233334444444444444444444443 333322211 1112467778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 007622 114 ALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRL----QRV 189 (595)
Q Consensus 114 ~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl----~kv 189 (595)
.|..++....+-..++..+..||..|-..|+.... . + +-+..+..+.+.+++.|+.+...-+ ..+
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~------~--L---~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEA------A--L---DASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------H--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888888888888888888776643221 0 0 1244455666666666655554443 344
Q ss_pred HHHHHHHHH-HHHHcCCCchhhhhh---cc---CccccccccCCCCCHHHHHHHHHHHHHH
Q 007622 190 EKYIDAVRS-LSATLGMESSMIITK---VH---PSLSELFGISKNISDNILAKLNSTVESL 243 (595)
Q Consensus 190 ~~l~~~I~~-L~~~Lg~d~~~~~~e---vh---~sl~~~~~~~~~lS~~~L~~L~~~~~~L 243 (595)
..+.+.+.. |-..||-.+.-.+.. +. ..|. . .+..|++.....|......|
T Consensus 193 ~~~~~~~~~~l~~~~~~~~~iri~g~~~~~~~~vlF~-~--gsa~L~~~~~~~L~~ia~~l 250 (343)
T PRK09039 193 NRYRSEFFGRLREILGDREGIRIVGDRFVFQSEVLFP-T--GSAELNPEGQAEIAKLAAAL 250 (343)
T ss_pred HHhHHHHHHHHHHHhCCCCCcEEECCEEEecCCceeC-C--CCcccCHHHHHHHHHHHHHH
Confidence 555555532 234555432211110 00 1121 1 35567777666555555444
No 69
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.53 E-value=2e+02 Score=27.38 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 163 LSLKKLEEYQIELQGLHNEKNDRLQR 188 (595)
Q Consensus 163 lS~~~L~~l~~~L~~Lq~EK~~Rl~k 188 (595)
.|.+.+..+......+.++...|..-
T Consensus 142 vs~ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999888654
No 70
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=54.24 E-value=2.9e+02 Score=29.28 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHH
Q 007622 165 LKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLE 244 (595)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~ 244 (595)
.-.++.|+..+..|+.|-..-..++..+......+ ...-. -|...|...+.-.+..|+.|...+.+-.
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~--------EekEq----qLv~dcv~QL~~An~qia~LseELa~k~ 226 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTY--------EEKEQ----QLVLDCVKQLSEANQQIASLSEELARKT 226 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc--------cHHHH----HHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 46788899999999887665555555544333222 11000 0111111244445667888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007622 245 EEKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQEL 324 (595)
Q Consensus 245 e~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkel 324 (595)
++-..-...|..|.++|..|=.++.--.-|-+....... .+.+.=..+.+|+.-|+.-++..+.-|
T Consensus 227 Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~--------------~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ--------------ASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666677888888888887766544433333332221 245677778899999888888877666
Q ss_pred HHHHHHHHHHHH
Q 007622 325 FLKKQKELEDIC 336 (595)
Q Consensus 325 I~k~r~eL~elw 336 (595)
. ..+.+|..+-
T Consensus 293 ~-EaQEElk~lR 303 (306)
T PF04849_consen 293 H-EAQEELKTLR 303 (306)
T ss_pred H-HHHHHHHHhh
Confidence 5 6677776654
No 71
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=54.03 E-value=2.9e+02 Score=29.14 Aligned_cols=38 Identities=13% Similarity=0.365 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007622 166 KKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATL 203 (595)
Q Consensus 166 ~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~L 203 (595)
..+.++...+..+..+-+.=..++..+.+.+..+.+.|
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777666666777777776665554
No 72
>PRK03918 chromosome segregation protein; Provisional
Probab=53.58 E-value=4.7e+02 Score=31.46 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchH
Q 007622 363 HADLLTSMDEQISRAKEEASSRKV 386 (595)
Q Consensus 363 ~eelL~~~E~eI~~lk~~~~~~k~ 386 (595)
..+++..++.+|..+...+..-+.
T Consensus 450 ~~el~~~~~~ei~~l~~~~~~l~~ 473 (880)
T PRK03918 450 RKELLEEYTAELKRIEKELKEIEE 473 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777766665443
No 73
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=53.29 E-value=3.1e+02 Score=29.27 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=68.5
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccc
Q 007622 80 EFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVN 159 (595)
Q Consensus 80 El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd 159 (595)
+-..+-...|..+. ......+|...+..|+..++....-=..-...|.....-+.-||........+. +. ....+
T Consensus 108 ed~~~R~k~G~~~~---S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~i-Ps-~~~~~ 182 (337)
T cd09234 108 QEKEFQEAVGKRGS---SIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKL-PS-PSLLD 182 (337)
T ss_pred HHHHHHHHcCCCCC---chhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhC-CC-ccccC
Confidence 33445556675421 111245788999999999999988777767777766666666654211000000 00 00111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 160 ENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRS 198 (595)
Q Consensus 160 ~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~ 198 (595)
.+-....+..|+..+..+..-+.+|...+.+++..++.
T Consensus 183 -~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~ 220 (337)
T cd09234 183 -RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIHE 220 (337)
T ss_pred -CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11234568888888888888888888888888776654
No 74
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.27 E-value=4.2e+02 Score=30.82 Aligned_cols=203 Identities=15% Similarity=0.186 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHH
Q 007622 232 ILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVK 311 (595)
Q Consensus 232 ~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~ 311 (595)
-+..|+..++.+......-...+..+...+..++.....-..+...-....... . =+.+.+...+.=|.
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~----------~-k~~~lL~d~e~ni~ 397 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK----------K-KTVELLPDAEENIA 397 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHhcCcHHHHH
Confidence 355566666666555555555566666666555554443322222211111000 0 01122222233333
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 007622 312 RLDQLKASKMQELFLKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSRKVIMEKV 391 (595)
Q Consensus 312 RLe~lK~~~mkelI~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~k~Ile~v 391 (595)
.|+.+-.... ....+|..-|...-.+..+.-. ..-....+ --...-..+..++.....-+.|..-+
T Consensus 398 kL~~~v~~s~-----~rl~~L~~qWe~~R~pL~~e~r--~lk~~~~~-------~~~e~~~~~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 398 KLQALVEASE-----QRLVELAQQWEKHRAPLIEEYR--RLKEKASN-------RESESKQKLQEIKELREEIKEIEEEI 463 (594)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHH--HHHHHHhh-------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322 2345677778766555332111 11111110 00112223455666666677777777
Q ss_pred HHHHHHhhHH-HHHHHHcCCccc--cccccCchhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHcCCeeEE
Q 007622 392 ERWMLARDEE-RWLEEYSMDENR--YSVSRGAHRNLRRAERARVTVKKIPALVDSLFAMTKSWEEERKKVFLY 461 (595)
Q Consensus 392 ekw~~~~~Ee-~wLE~~~~D~nR--~~~~RG~h~~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~e~g~~Fl~ 461 (595)
..|......- .-++...+|.|| |.. .=+-+-..=.|.+.-|+|+=.=+..|...|..-...-.+.|.|
T Consensus 464 ~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~--RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v 534 (594)
T PF05667_consen 464 RQKEELYKQLVKELEKLPKDVNRSAYTR--RILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTV 534 (594)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7774444321 337888899998 553 2222445556677677775555556666666655555667765
No 75
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=53.12 E-value=2.2e+02 Score=27.58 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 53 LDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAV 132 (595)
Q Consensus 53 l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l 132 (595)
+.+++.++.........+.+++....+||..|-+.|-.+. +-+..+.|+.. +...
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ee-----------mQe~i~~L~ke--------------v~~~ 135 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEE-----------MQEEIQELKKE--------------VAGY 135 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-----------HHHHHHHHHHH--------------HHHH
Confidence 3455566666677788899999999999999998885211 22222333333 3333
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 133 QAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAV 196 (595)
Q Consensus 133 ~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I 196 (595)
...|..|-+ |..+ .+++..+......+..-++-..|..-|.++..++
T Consensus 136 ~erl~~~k~---g~~~--------------vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 136 RERLKNIKA---GTNH--------------VTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred HHHHHHHHH---hccc--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 3221 3666666666666666666666666666655544
No 76
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=53.03 E-value=13 Score=35.26 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCcchhhHH
Q 007622 326 LKKQKELEDICNNSHMEIPSQSKM 349 (595)
Q Consensus 326 ~k~r~eL~elw~~~~~~~~~~~~~ 349 (595)
++.|.+|-+||+.|++|.-.|+.|
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyF 26 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYF 26 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhh
Confidence 567899999999999999888765
No 77
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.87 E-value=3e+02 Score=29.01 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 60 VDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKI 139 (595)
Q Consensus 60 V~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~l 139 (595)
+++.+..|+.+.+.+....++-..|-....+-. ....++.++.+.+...+.+++..+.+--..+..+...+..+
T Consensus 22 ~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~------e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 22 IEELKEKRDELRKEASELAEKRDELNAKVRELR------EKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555444444444433332211 01124556666666666666666666555555566666655
Q ss_pred HHHhc
Q 007622 140 SAEIA 144 (595)
Q Consensus 140 c~eL~ 144 (595)
-..+.
T Consensus 96 ~e~~~ 100 (294)
T COG1340 96 KEKRN 100 (294)
T ss_pred HHHhh
Confidence 55443
No 78
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=52.68 E-value=3.1e+02 Score=29.14 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc
Q 007622 78 EAEFTHLLLSLGERSLP-GRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNV 156 (595)
Q Consensus 78 ~~El~~L~~eLge~~~~-~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~ 156 (595)
..+...+....|..-.. +.......++.+.+..|+..|+....--..=...|.....-+.-||. ... ......|
T Consensus 104 ~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~----~~~-~l~~~~P 178 (342)
T cd08915 104 AAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCG----GYK-ELKAFIP 178 (342)
T ss_pred HHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcC----ChH-HHHHhCC
Confidence 34444556667762211 10122334788889999999998888877777777777666665553 111 0000011
Q ss_pred ccc-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 157 IVN-ENDLS-LKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRS 198 (595)
Q Consensus 157 ~vd-~~dlS-~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~ 198 (595)
... ..+++ ...+..++..+..|..-+.+|...+.++...++.
T Consensus 179 s~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ 222 (342)
T cd08915 179 SPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRN 222 (342)
T ss_pred CccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 010 11122 3678889999999999999998888888776554
No 79
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.36 E-value=2.5e+02 Score=28.36 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007622 103 TLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEI 143 (595)
Q Consensus 103 tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL 143 (595)
-+++.+..++.+++++.++|.+-++++.+++.+......+|
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999988888777666554
No 80
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.18 E-value=2.7e+02 Score=29.54 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=30.5
Q ss_pred cCCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 224 ISKNISDNILAKLNST--------VESLEEEKKKRLEKLHQLGKALTNL 264 (595)
Q Consensus 224 ~~~~lS~~~L~~L~~~--------~~~L~e~K~~R~~kl~~L~~~L~~L 264 (595)
.+..+|.++...|... +.+|-.+|..-+.+|..|..+|.+.
T Consensus 197 ~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 197 KRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred cccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555777777766665 7888888888888888888877643
No 81
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=52.16 E-value=2.1e+02 Score=26.89 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 57 RRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQI 136 (595)
Q Consensus 57 ~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi 136 (595)
.+-++.....+..+...-...++++..|-..|. .+-..+..+...|..++.+|..-.+++...+.+|
T Consensus 30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~-------------~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 30 ERELEMSQENKECLILDAENSKAEIETLEEELE-------------ELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555566666667777777777776665 2445677788888888888888888888888888
Q ss_pred HHHHH
Q 007622 137 QKISA 141 (595)
Q Consensus 137 ~~lc~ 141 (595)
..|-.
T Consensus 97 ~eLE~ 101 (140)
T PF10473_consen 97 SELES 101 (140)
T ss_pred HHHHH
Confidence 76655
No 82
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=52.01 E-value=1.7e+02 Score=30.73 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007622 56 YRRKVDRANISRARLHQELAESEAEFTHLLLSLG 89 (595)
Q Consensus 56 y~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLg 89 (595)
||..|++.+..+..+.+.+......+..|.+++-
T Consensus 225 WR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit 258 (384)
T KOG0972|consen 225 WRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT 258 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 7888999999999999998888888888877664
No 83
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=50.97 E-value=1.9e+02 Score=34.20 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 51 ECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFR 130 (595)
Q Consensus 51 e~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~ 130 (595)
||-+.++....+.+.+-.+|..++...++++..+-.++ ..++....+-.+.-+.-+-.+.
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------------------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL--------------------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhhhhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007622 131 AVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATL 203 (595)
Q Consensus 131 ~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~L 203 (595)
.++++=..|-.-|......-.+.-+. |.+-+.+|+.++.....+-.+|.++...|.+++.+|
T Consensus 598 amqdk~~~LE~sLsaEtriKldLfsa-----------Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 598 AMQDKNQHLENSLSAETRIKLDLFSA-----------LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=50.91 E-value=3.1e+02 Score=28.54 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 55 VYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQA 134 (595)
Q Consensus 55 vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~ 134 (595)
-++..|+.+...++++.-.+..+..++..+-..+-... .....+...+..++..++.....+.+--.++..++.
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~------~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL------AERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 34778888888888888888888877777765443210 000123334445555555444444444444444444
Q ss_pred HHH
Q 007622 135 QIQ 137 (595)
Q Consensus 135 qi~ 137 (595)
++.
T Consensus 132 El~ 134 (312)
T PF00038_consen 132 ELE 134 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=50.85 E-value=4e+02 Score=29.79 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 59 KVDRANISRARLHQELAESEAEFTHLLLSLGERS-LP-GRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQI 136 (595)
Q Consensus 59 kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~-~~-~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi 136 (595)
.+.+.+.........++..++.+..|-..++..+ .. .......-++..++..++.++..+....-+..-.+.+++.+|
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi 284 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREI 284 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 3444455555555566667777777777776422 11 111122347889999999999999999999899999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007622 137 QKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATL 203 (595)
Q Consensus 137 ~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~L 203 (595)
..+-..+....... ...+ ........-+..+...+..++.+...-..++..+...+..+-..+
T Consensus 285 ~~l~~~l~~~~~~~--~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 347 (498)
T TIGR03007 285 AQLEEQKEEEGSAK--NGGP--ERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLL 347 (498)
T ss_pred HHHHHHHHhhcccc--ccCc--ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888764322100 0000 000011222466666677777666666666666666665554433
No 86
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.64 E-value=3.2e+02 Score=32.43 Aligned_cols=112 Identities=19% Similarity=0.230 Sum_probs=69.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 57 RRKVDRAN-ISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQ---LDSITPALREMRLRKEERVNQFRAV 132 (595)
Q Consensus 57 ~~kV~e~~-~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eq---l~~l~~~LE~Lrk~K~eR~~ef~~l 132 (595)
...||... ..+.+|.+.|....++|..|-.+|=.. ...+.+..+..+.+. ++.+-..+..|....++++-+|.
T Consensus 767 ~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~-m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~-- 843 (1104)
T COG4913 767 DDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGR-MSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFL-- 843 (1104)
T ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHH--
Confidence 34555555 678888888888888888777654210 001112222233332 66777777777777788888874
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 133 QAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKY 192 (595)
Q Consensus 133 ~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l 192 (595)
...+.+.. . -|...+..|..+|..-..+.++|.+-+..-
T Consensus 844 -arF~~llN---~-----------------~S~~~v~q~~~~L~~er~~IeERIe~IN~S 882 (1104)
T COG4913 844 -ARFQELLN---R-----------------SSDDGVTQLLSHLDHERALIEERIEAINDS 882 (1104)
T ss_pred -HHHHHHhh---h-----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 1 255668888899999999999997765543
No 87
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.02 E-value=46 Score=36.06 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 109 DSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNE-NDLSLKKLEEYQIELQGLHNEKNDRLQ 187 (595)
Q Consensus 109 ~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~-~dlS~~~L~~l~~~L~~Lq~EK~~Rl~ 187 (595)
..-|.+|++|+..+..=-..+.++..++.+|..+|.....-....+. .++. -......+...+..|.+.+.++...-.
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk-~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK-YINNQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999999999999998888654320000000 0111 112345566667777777777777777
Q ss_pred HHHHHHHHHHHHHHHcC
Q 007622 188 RVEKYIDAVRSLSATLG 204 (595)
Q Consensus 188 kv~~l~~~I~~L~~~Lg 204 (595)
-|.++...+..|...|.
T Consensus 295 ~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 295 GVSERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777766664
No 88
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.50 E-value=5.1e+02 Score=30.67 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 007622 126 VNQFRAVQAQIQKISAEIAGLSE 148 (595)
Q Consensus 126 ~~ef~~l~~qi~~lc~eL~~~~~ 148 (595)
-..|.+.+.++.++..++.....
T Consensus 460 gsA~ed~Qeqn~kL~~el~ekdd 482 (698)
T KOG0978|consen 460 GSAFEDMQEQNQKLLQELREKDD 482 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888888888888866553
No 89
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.85 E-value=3.9e+02 Score=30.81 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHH---
Q 007622 106 EQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEK--- 182 (595)
Q Consensus 106 eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK--- 182 (595)
+.|..+...+..|+.-+..=-..+.++.....++-.+|..-. -+...++.|+..+..++.+.
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~---------------~~~~~~~~Le~~~~~l~~~~~~~ 361 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD---------------NSEESLEALEKEVKKLKAELLEA 361 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh---------------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665554444445555555555555553211 13444555666666655554
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHcCCCchh
Q 007622 183 -----NDRLQRVEKYIDAVRSLSATLGMESSM 209 (595)
Q Consensus 183 -----~~Rl~kv~~l~~~I~~L~~~Lg~d~~~ 209 (595)
..|.+....+-..|..-+..|+|.-..
T Consensus 362 A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~a~ 393 (557)
T COG0497 362 AEALSAIRKKAAKELEKEVTAELKALAMEKAR 393 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 457777888899999999999997544
No 90
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=48.60 E-value=22 Score=27.10 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHH-hhchHHHHHHH
Q 007622 368 TSMDEQISRAKEEA-SSRKVIMEKVE 392 (595)
Q Consensus 368 ~~~E~eI~~lk~~~-~~~k~Ile~ve 392 (595)
..||.||..++..| ..|+||++.|+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 46899999997665 57899999885
No 91
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=48.60 E-value=3.7e+02 Score=28.84 Aligned_cols=195 Identities=16% Similarity=0.159 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCCC----------CCCCCHHHHHHHHHHHHH
Q 007622 52 CLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLP-----GRPE----------KMTGTLKEQLDSITPALR 116 (595)
Q Consensus 52 ~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~-----~~~~----------~~~~tL~eql~~l~~~LE 116 (595)
...+|....++.-. +. ...+..+-.++..+...|+.|-.- +.+. .+..++...+..+.+...
T Consensus 7 a~S~YsE~ka~lvr--~e-~~~~e~a~~~~~~~L~~lnLP~sL~~l~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~l~~ 83 (356)
T cd09237 7 KESLYSEEKAKLLR--AE-VERVEVANEEYASFLEYLNLPKLLVDLKERFEGENELMEIVSGLKSSSVDSQLELLRPQSA 83 (356)
T ss_pred HHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHcCCcHHHHHHhhhcCCchhHHHHHHhccCCCcchhHHHhHHHHH
Confidence 45677776666532 22 366788888888888888875310 1110 001122222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 117 EMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLS---LKKLEEYQIELQGLHNEKNDRLQRVEKYI 193 (595)
Q Consensus 117 ~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS---~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~ 193 (595)
.....-.+-...+..=..++..+...++. .. ...+.. .++ ..++..|+..|..-..-= .++....
T Consensus 84 ~~~~~l~~~~~~L~~E~~ed~~~R~k~g~-~W-tr~~S~------~~~~~l~~~~~k~~~~L~~A~~SD----~~l~~~~ 151 (356)
T cd09237 84 SWVNEIDSSYNDLDEEMKEIEKMRKKILA-KW-TQSPSS------SLTASLREDLVKLKKSLVEASASD----EKLFSLV 151 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-ccccch------hhhHHHHHHHHHHHHHHHHHHhhH----HHHHHHH
Confidence 33333333333333334444444454433 21 111111 122 244455555444433222 2355555
Q ss_pred HHHHHHHHHcCCCchhhhhhcc--Cccccccc--cCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 194 DAVRSLSATLGMESSMIITKVH--PSLSELFG--ISKNIS------DNILAKLNSTVESLEEEKKKRLEKLHQLGKALT 262 (595)
Q Consensus 194 ~~I~~L~~~Lg~d~~~~~~evh--~sl~~~~~--~~~~lS------~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~ 262 (595)
..+......|+.+... +.... |+.....+ -..+++ ...+..|+..+.+|+..|.+|...+++|+..++
T Consensus 152 ~~~~~~l~lL~~~~~~-l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~ 229 (356)
T cd09237 152 DPVKEDIALLLNGGSL-WEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIH 229 (356)
T ss_pred HHHHHHHHHHcCChHH-HHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666677655433 22211 22100000 001111 345899999999999999999999999988754
No 92
>PRK09039 hypothetical protein; Validated
Probab=48.51 E-value=3.8e+02 Score=28.85 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007622 67 RARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGL 146 (595)
Q Consensus 67 k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~ 146 (595)
-..+-++|+.++++|+.|-..|+..- .....|-+.+..++.+++.++..+.. ++..... ....
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~------~~~~~l~~~l~~l~~~l~~a~~~r~~-------Le~~~~~----~~~~ 110 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLER------QGNQDLQDSVANLRASLSAAEAERSR-------LQALLAE----LAGA 110 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhh----hhhh
Confidence 45566677778888888777777421 22345666677777777766665542 2222221 1000
Q ss_pred CCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 147 SEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSAT 202 (595)
Q Consensus 147 ~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~ 202 (595)
...-..++..+...|..++.+.++-...|.-+..+|-.|=..
T Consensus 111 --------------~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 111 --------------GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 012356777788888888888888877877777777777333
No 93
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.26 E-value=91 Score=23.38 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007622 47 DLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLG 89 (595)
Q Consensus 47 ~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLg 89 (595)
|+|.+| +++++-.+.....-+.|.++.+.+++++..|-..|+
T Consensus 2 QlE~Dy-~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDY-DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577776 467888888888889999999999999998887765
No 94
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.77 E-value=6.2e+02 Score=31.16 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Q 007622 469 MLEEYNMARQEREEEKQRQREKKK 492 (595)
Q Consensus 469 ~l~e~~~~r~eKE~ek~r~r~~kk 492 (595)
-+++|...-.+||.-+.|+-+.++
T Consensus 975 AldQf~nfseQre~L~~R~eELd~ 998 (1200)
T KOG0964|consen 975 ALDQFVNFSEQRESLKKRQEELDR 998 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567788888888888877776433
No 95
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=47.76 E-value=1.3e+02 Score=28.62 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHcCCcccccc--ccCchhhhHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHcCCeeEE-
Q 007622 386 VIMEKVERWMLARDEERWLEEYSMDENRYSV--SRGAHRNLRRAERARVTVKKI-PALVDSLFAMTKSWEEERKKVFLY- 461 (595)
Q Consensus 386 ~Ile~vekw~~~~~Ee~wLE~~~~D~nR~~~--~RG~h~~LlreEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~- 461 (595)
.++..+..-..-+.++.|++--.--|.==.. ..|.-......|....-+..+ |...+.|...=.+|+..+|-||++
T Consensus 38 ~L~~a~~~~~~~~~~~~~~~~l~aHP~lg~~~~~~~~~s~~S~~EQ~~agl~~~~~~~~~~L~~lN~~Y~~kFGf~Fvi~ 117 (159)
T PF09349_consen 38 ALIAAADEAVRSLSEEDKLEALRAHPRLGERAARAGNLSAASASEQASAGLDSLDEEELAELAALNQAYEEKFGFPFVIC 117 (159)
T ss_dssp HHHHHHHHHHHCS-HHHHHHHHHTS--TTSHHHHHCCCHHHHHHHTHHCCTTSTHHHHHHHHHHHHHHHHHHHSS-----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHhCcccccccccccccchhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHcCCceEee
Confidence 3333333333344466776666655532110 001111355566666666674 788899999999999999999998
Q ss_pred -cCccHHHHHHH-HHHHHHhHHHHHH
Q 007622 462 -DEVPLLAMLEE-YNMARQEREEEKQ 485 (595)
Q Consensus 462 -dG~~ll~~l~e-~~~~r~eKE~ek~ 485 (595)
.|..--++|.+ ...+....+.|..
T Consensus 118 ~~g~s~~~Il~~l~~Rl~n~~~~E~~ 143 (159)
T PF09349_consen 118 ARGRSAAEILAALERRLNNDPEEELR 143 (159)
T ss_dssp GTT--HHHHHHHHHHHTTS-HHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCHHHHHH
Confidence 89988889988 6776777777763
No 96
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=47.73 E-value=1.6e+02 Score=24.33 Aligned_cols=65 Identities=32% Similarity=0.338 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 17 ETSCGYLLQELQMIWDEVGEDQFEREKVLLDLEQECLD-VYRRKVDRANISRARLHQELAESEAEFTH 83 (595)
Q Consensus 17 ~~~c~~ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~-vy~~kV~e~~~~k~~L~q~Ia~~~~El~~ 83 (595)
-++-.++|.-||.=||-|-...+.-.+.+.+..+|.-. +|+ -|-+...-+++.++-.+++..++.
T Consensus 3 ~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq--~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 3 ATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQ--HDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhHHHHHHHHHh
Confidence 35566899999999999998888766666666666433 332 355555566666666666655554
No 97
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=47.18 E-value=2.6e+02 Score=26.62 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=45.5
Q ss_pred hhhhh-hHHHHHHHHHHHHHHHHcCCeeEE--cCccHHHHHHH-HHHHHHhHHHHHHH
Q 007622 433 TVKKI-PALVDSLFAMTKSWEEERKKVFLY--DEVPLLAMLEE-YNMARQEREEEKQR 486 (595)
Q Consensus 433 ~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~r 486 (595)
-++.+ |...+.|...=.+|++.+|-||++ .|..--++|.. ...+....|+|...
T Consensus 84 gl~~~~~~~~~~L~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~ 141 (158)
T TIGR03180 84 GVDGADEETRAALLEGNAAYEEKFGRIFLIRAAGRSAEEMLDALQARLPNDPEQELTI 141 (158)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHCCCeEEEeeCCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 56664 788889999999999999999998 79989999998 77777777877643
No 98
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=46.62 E-value=2.7e+02 Score=26.54 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHH
Q 007622 164 SLKKLEEYQIELQGLHNEKNDRLQRVEKYID--------AVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAK 235 (595)
Q Consensus 164 S~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~--------~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~ 235 (595)
+.+.+..|-..-..++.+++..+.++..-.. ++...|..+.-. .+.+..+|..+ +..|.....+-
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e-~~~~a~~h~~~------a~~l~~~i~~~ 87 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREE-TESAATVHEEL------SEKLSQLIREP 87 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH-HHHHHHHHHHH------HHHHHHHHHHH
Confidence 4556666767777788888888777554332 122222222110 01111122222 11233333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--hhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHH
Q 007622 236 LNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMGTP--YNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRL 313 (595)
Q Consensus 236 L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p--~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RL 313 (595)
+.......+..+..-...+..+...+..+|..+.-. .+++..-...+.. ...+-...+..+.. .+.+
T Consensus 88 ~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~kk~~~~y~~~~~~~~~~----------~~~~~~~~~~~~~~-~q~~ 156 (191)
T cd07610 88 LEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAKKADEEYREQVEKLNPA----------QSEYEEEKLNKIQA-EQER 156 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHhHHHHH-HHHH
Confidence 444444444434444556778888888888877542 2222222211110 00011122222222 4455
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcC
Q 007622 314 DQLKASKMQELFLKKQKELEDICNNSH 340 (595)
Q Consensus 314 e~lK~~~mkelI~k~r~eL~elw~~~~ 340 (595)
++.+...|++++...-.-+.+++..+.
T Consensus 157 ~e~r~~~~~~~l~~~~~~~~~~~~~~~ 183 (191)
T cd07610 157 EEERLEILKDNLKNYINAIKEIPQKIQ 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 566666666666665555555555443
No 99
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=44.85 E-value=3.8e+02 Score=27.85 Aligned_cols=36 Identities=8% Similarity=0.255 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 106 EQLDSITPALREMRLRKEERVNQFRAVQAQIQKISA 141 (595)
Q Consensus 106 eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~ 141 (595)
..+..++..|+.+...+..-.-++..+...+..+-.
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~ 89 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRR 89 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHH
Confidence 344555555555555555555555555554444433
No 100
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=44.44 E-value=3.5e+02 Score=27.38 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 007622 19 SCGYLLQELQMIWDEVGEDQFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPE 98 (595)
Q Consensus 19 ~c~~ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~ 98 (595)
.|.+|...+..|=+.|+....+|...+-.+-.. .+.+.......+-.+...-...-..|+.-||
T Consensus 93 ~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~-------l~~~l~~l~~~~~~Er~~R~erE~~i~krl~--------- 156 (247)
T PF06705_consen 93 RLDSLNDRIEALEEEIQEEKEERPQDIEELNQE-------LVRELNELQEAFENERNEREEREENILKRLE--------- 156 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHH
Q 007622 99 KMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGL 178 (595)
Q Consensus 99 ~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~L 178 (595)
+....+...++ .++..|-..+.++...+..++........- +-.--+++|...-..|
T Consensus 157 -------e~~~~l~~~i~---~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~-------------f~~~v~~Ei~~lk~~l 213 (247)
T PF06705_consen 157 -------EEENRLQEKIE---KEKNTRESKLSELRSELEEVKRRREKGDEQ-------------FQNFVLEEIAALKNAL 213 (247)
T ss_pred -------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 007622 179 HNEKNDRLQRVEKYIDAVRSLSATL 203 (595)
Q Consensus 179 q~EK~~Rl~kv~~l~~~I~~L~~~L 203 (595)
..|...|...=.+++..|+.+...|
T Consensus 214 ~~e~~~R~~~Dd~Iv~aln~yt~~l 238 (247)
T PF06705_consen 214 ALESQEREQSDDDIVQALNHYTKAL 238 (247)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
No 101
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=42.82 E-value=9.8e+02 Score=32.01 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 53 LDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPG-RPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRA 131 (595)
Q Consensus 53 l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~-~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~ 131 (595)
+.-+...+++..+.++.+...=..++.++..++.+++...... -.+...-.+-.++..+...++++.....+-..+...
T Consensus 1191 ~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~ 1270 (1930)
T KOG0161|consen 1191 LAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSR 1270 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888888999999998887432110 011111122334555555555555443333333333
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcccccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 007622 132 VQAQIQKISAEIAGLSEYDDSSTNVIVNENDLS--LKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMES 207 (595)
Q Consensus 132 l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS--~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~ 207 (595)
+..+...+...+..... . .... ..+.+ ..+|+.++.++..-..++......+..+...+..|-+.|..+.
T Consensus 1271 l~~E~~~l~~~lee~e~-~----~~~~-~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~ 1342 (1930)
T KOG0161|consen 1271 LQNENEELSRQLEEAEA-K----LSAL-SRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQ 1342 (1930)
T ss_pred hhhhHHHHhhHhHHHHH-H----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333222211100 0 0000 00111 3466777777777777777777777777777777766665443
No 102
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.72 E-value=2.4e+02 Score=24.63 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 232 ILAKLNSTVESLEEEKKKRLEKLHQLGKALTNL 264 (595)
Q Consensus 232 ~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~L 264 (595)
.++.+...+..|......-.+++.++...|.++
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555443
No 103
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=40.65 E-value=2.2e+02 Score=32.92 Aligned_cols=101 Identities=10% Similarity=0.114 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHcCCcc---ccccccCchhhhHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHcCCee
Q 007622 384 RKVIMEKVERWMLARDEERWLEEYSMDEN---RYSVSRGAHRNLRRAERARVTVKKI-PALVDSLFAMTKSWEEERKKVF 459 (595)
Q Consensus 384 ~k~Ile~vekw~~~~~Ee~wLE~~~~D~n---R~~~~RG~h~~LlreEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~F 459 (595)
...++..+.....-+.++.|++--.--|. |-. .+|..-...+.|....-++.+ |...+.|...=.+|++.+|-||
T Consensus 43 ~~~l~~a~~~~~~~~~~~~~~~~l~~HP~lg~~~~-~~~~~~~~S~~EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~f 121 (591)
T PRK13799 43 IAAIKQALAGVLDAADRAAKLDLIRAHPELAGKAA-EAGELTAESTGEQAKAGLNLCTPEEFAAIQKLNADYGKKFGFPF 121 (591)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCcccccCcc-cccccchhhHhHHHhhhcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 33344444444444556666655554442 111 122222355678888888884 8899999999999999999999
Q ss_pred EE--cCc-----cHHHHHHH-HHHHHHhHHHHHH
Q 007622 460 LY--DEV-----PLLAMLEE-YNMARQEREEEKQ 485 (595)
Q Consensus 460 l~--dG~-----~ll~~l~e-~~~~r~eKE~ek~ 485 (595)
++ .|. .--++|+. ...+....|+|.+
T Consensus 122 ii~~~g~~~~~~~~~~il~~l~~Rl~n~~e~E~~ 155 (591)
T PRK13799 122 ILAVKGARGAGLAKAEIIATFERRLHNHPDDELG 155 (591)
T ss_pred EEEEcCcccCCCCHHHHHHHHHHHhCCCHHHHHH
Confidence 98 564 46778877 7777777777763
No 104
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=40.62 E-value=7.8e+02 Score=30.28 Aligned_cols=18 Identities=11% Similarity=-0.034 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 007622 436 KIPALVDSLFAMTKSWEE 453 (595)
Q Consensus 436 KlPkl~~~L~~~l~~wE~ 453 (595)
.+-.-++.|...+.+|+.
T Consensus 969 ~l~~~i~~lg~aiee~~~ 986 (1179)
T TIGR02168 969 EARRRLKRLENKIKELGP 986 (1179)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 344445555556666643
No 105
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.06 E-value=2.2e+02 Score=28.37 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 007622 166 KKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGME 206 (595)
Q Consensus 166 ~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d 206 (595)
..|.-|+.+|.+.+.|.+.+...+..++..+...-..|...
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~ 50 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNK 50 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 45778999999999999999999999999999887777543
No 106
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=40.01 E-value=3.4e+02 Score=25.83 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=49.1
Q ss_pred hHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHcCCeeEE--cCccHHHHHHH-HHHHHHhHHHHHH
Q 007622 424 LRRAERARVTVKKI-PALVDSLFAMTKSWEEERKKVFLY--DEVPLLAMLEE-YNMARQEREEEKQ 485 (595)
Q Consensus 424 LlreEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~ 485 (595)
..+.|....-+..+ |...+.|...=.+|++.+|-||++ +|..--++|.+ ...+....++|..
T Consensus 75 ~S~~EQ~~agl~~~~~~~~~~L~~lN~~Y~~kFGfpFvi~v~g~~~~~Il~~l~~Rl~n~~~~E~~ 140 (157)
T TIGR03164 75 ESTSEQASAGLDQLSQEEFARFTRLNNAYRARFGFPFIMAVKGKTKQSILAAFEARLNNDRETEFA 140 (157)
T ss_pred hhHHHHHhccccCCCHHHHHHHHHHHHHHHHHCCCeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHH
Confidence 33445555556675 788899999999999999999998 79988999988 7777777777763
No 107
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=39.81 E-value=5.7e+02 Score=30.57 Aligned_cols=163 Identities=17% Similarity=0.256 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhCC
Q 007622 17 ETSCGYLLQELQMIWDEVGEDQFEREKVLLDLEQECLDVYRRKVDRANIS------RARLHQELAESEAEFTHLLLSLGE 90 (595)
Q Consensus 17 ~~~c~~ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~------k~~L~q~Ia~~~~El~~L~~eLge 90 (595)
-.|..+||.+|+.+-.+.|.++.+| .+.++ ++|..++=..+-..+.. -.-|.-+.+.++..|..|-..|-+
T Consensus 336 Vrt~KYLLgELkaLVaeq~DsE~qR--LitEv-E~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 336 VRTLKYLLGELKALVAEQEDSEVQR--LITEV-EACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHH--HHHHH-HHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3577889999999999998888876 34444 33655544333222111 222334445555555555444433
Q ss_pred CCCC----C-----C----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccc
Q 007622 91 RSLP----G-----R----PEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVI 157 (595)
Q Consensus 91 ~~~~----~-----~----~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~ 157 (595)
..-. + + --....+|--||......+|.|+.+-++-++.+...+.+=.++...+.....
T Consensus 413 qe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~--------- 483 (861)
T PF15254_consen 413 QEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQ--------- 483 (861)
T ss_pred HHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 2100 0 0 0001235556677777777777777777777777777777777765533221
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 158 VNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAV 196 (595)
Q Consensus 158 vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I 196 (595)
-..+.-..|..+...++.|.++-+..|..+...+
T Consensus 484 -----~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kL 517 (861)
T PF15254_consen 484 -----ELLENKQQFDIETTRIKIEVEEALVNVKSLQFKL 517 (861)
T ss_pred -----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 0223334455566666666666666655554433
No 108
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.66 E-value=4.9e+02 Score=27.66 Aligned_cols=144 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007622 46 LDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEER 125 (595)
Q Consensus 46 ~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR 125 (595)
.++-+.+.+.+.+.++..+...+.|.+.++.+..-+..|. +..+.|...+..|+....+=
T Consensus 139 ~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~--------------------~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLR--------------------DRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhHHHH
Q ss_pred HH----HHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 126 VN----QFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSA 201 (595)
Q Consensus 126 ~~----ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~ 201 (595)
-. ++..++++|.....+|.. ....+++++.+++.+......-..+..++...|..+=.
T Consensus 199 ~~~d~~eL~~lk~~l~~~~~ei~~------------------~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 199 EDCDPTELDRAKEKLKKLLQEIMI------------------KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHH
Q 007622 202 TLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEE 246 (595)
Q Consensus 202 ~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~ 246 (595)
.+. ++...|..-+..|...++.|+..
T Consensus 261 ~~~-------------------~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 261 KLE-------------------QCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHH-------------------hcCCCCHHHHHHHHHHHHHHHHH
No 109
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=39.58 E-value=8.9e+02 Score=30.60 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 007622 229 SDNILAKLNSTVESLEEEKKKRLEKLHQLGK-ALTNLWN 266 (595)
Q Consensus 229 S~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~-~L~~LW~ 266 (595)
+.+++..+...+..+++++..+.+.+.+... .+.--|+
T Consensus 635 L~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e 673 (1317)
T KOG0612|consen 635 LEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLE 673 (1317)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888877665 3444443
No 110
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=39.10 E-value=1.3e+02 Score=28.99 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=44.4
Q ss_pred hhhhh-hHHHHHHHHHHHHHHHHcCCeeEE--cCccHHHHHHH-HHHHHHhHHHHHH
Q 007622 433 TVKKI-PALVDSLFAMTKSWEEERKKVFLY--DEVPLLAMLEE-YNMARQEREEEKQ 485 (595)
Q Consensus 433 ~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~ 485 (595)
-++.+ |...+.|...=.+|++.+|-||++ .|..--++|.. ...+....|+|..
T Consensus 89 gl~~l~~~~~~~l~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~ 145 (166)
T PRK13798 89 GVADADEAVMAALAAGNRAYEEKFGFVFLICATGRSADEMLAALQQRLHNDPETERK 145 (166)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHHhcCCHHHHHH
Confidence 45564 778889999999999999999998 79989999988 7777777787763
No 111
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.83 E-value=5.9e+02 Score=28.32 Aligned_cols=193 Identities=21% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHH
Q 007622 53 LDVYRRKVDRANI-------SRARLHQELAESEAEFTHLLLSLGERSLP--------GRPEKMTGTLKEQLDSITPALRE 117 (595)
Q Consensus 53 l~vy~~kV~e~~~-------~k~~L~q~Ia~~~~El~~L~~eLge~~~~--------~~~~~~~~tL~eql~~l~~~LE~ 117 (595)
..++.++|.+... ...++.++...++.-...|-.-+-+...+ ......-.-.+++.+.+.....+
T Consensus 224 v~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlq 303 (502)
T KOG0982|consen 224 VRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQ 303 (502)
T ss_pred HHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 007622 118 MRLRK-EERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEK---NDRLQRVEKYI 193 (595)
Q Consensus 118 Lrk~K-~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK---~~Rl~kv~~l~ 193 (595)
|+-+. ++=..++......+..+|+.+++..+ =+.+.|+.++.++...|+.+ ..++..|..-.
T Consensus 304 mr~qqleeentelRs~~arlksl~dklaee~q--------------r~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 304 MRDQQLEEENTELRSLIARLKSLADKLAEEDQ--------------RSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHcCCCchhhhhhccCccccccc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 194 DAVRSLSATLGMESSMIITKVHPSLSELFG-ISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNL 264 (595)
Q Consensus 194 ~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~-~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~L 264 (595)
..+..|..+|+-.....-.. .-.+. ...+.+-.....|...+.+|+..-..-..+=.+|..+|..|
T Consensus 370 eatqELieelrkelehlr~~-----kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTl 436 (502)
T KOG0982|consen 370 EATQELIEELRKELEHLRRR-----KLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTL 436 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhH
No 112
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=38.01 E-value=2.8e+02 Score=24.35 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 44 VLLDLEQECLDVYRRKVDRANISRARLHQELAESEAE 80 (595)
Q Consensus 44 ~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~E 80 (595)
.|.-.|+| .++.|+++.+......++..+++..+..
T Consensus 9 qLqFvEEE-a~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 9 QLQFVEEE-AELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333555 5688999999888888887766555543
No 113
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=37.86 E-value=5.4e+02 Score=27.56 Aligned_cols=193 Identities=19% Similarity=0.260 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 55 VYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQA 134 (595)
Q Consensus 55 vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~ 134 (595)
-|..|+++.......+.... .++..-+..-|.+.+++ .....+|-+.+...+.+...|..+-.+-.+.+.+++.
T Consensus 27 qyKlMAEqLqer~q~LKkk~----~el~~~~~~~~d~~~~~--~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 27 QYKLMAEQLQERYQALKKKY----RELIQEAAGFGDPSIPP--EKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhhhcccCCccCCc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555444333333333 22222233344444432 3344677677776666666666666666666666666
Q ss_pred HHHHHHHHhcCCCCCCCCCC-cccccCC-CC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 007622 135 QIQKISAEIAGLSEYDDSST-NVIVNEN-DL------SLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGME 206 (595)
Q Consensus 135 qi~~lc~eL~~~~~~~~~~~-~~~vd~~-dl------S~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d 206 (595)
.|.-+...+..........+ .....+. ++ ...+...|+.-++.+-.||.+=...-..|...++.|-.+|..
T Consensus 101 D~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~- 179 (319)
T PF09789_consen 101 DIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNY- 179 (319)
T ss_pred hHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66555554432211000000 0000000 00 112333344444444455666666666666777766555521
Q ss_pred chhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 207 SSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALT 262 (595)
Q Consensus 207 ~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~ 262 (595)
.+..-.+.+.|+++ |-.+ -..|+..+..+++++.--...+..|...+.
T Consensus 180 ---~L~g~~~rivDIDa----Li~E-NRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 180 ---ILNGDENRIVDIDA----LIME-NRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred ---HhCCCCCCcccHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110001111100 0000 134666666666666665555666555544
No 114
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.17 E-value=4.7e+02 Score=26.68 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=27.8
Q ss_pred hhHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHH
Q 007622 423 NLRRAERARVTVKK-IPALVDSLFAMTKSWEEE 454 (595)
Q Consensus 423 ~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e 454 (595)
.+-..+++|.-+.. |-..++.|...+..||.+
T Consensus 112 k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E 144 (233)
T PF04065_consen 112 KLDPKEKEKEEARDWLKDSIDELNRQIEQLEAE 144 (233)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888887 999999999999999998
No 115
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=37.14 E-value=4.3e+02 Score=26.22 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHH
Q 007622 230 DNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAE 309 (595)
Q Consensus 230 ~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~E 309 (595)
..+|.+++..+.+|..--..+.+++..+..+|.++=..... -+..|..+ =+.+..|
T Consensus 121 ~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~---a~~~~e~i---------------------s~~~k~E 176 (216)
T cd07627 121 ESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASE---LKKEFEEV---------------------SELIKSE 176 (216)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---------------------HHHHHHH
Confidence 44566666666655421111344555566666544333321 12234333 2346778
Q ss_pred HHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhcC
Q 007622 310 VKRLDQLKASKMQELFLK-------KQKELEDICNNSH 340 (595)
Q Consensus 310 v~RLe~lK~~~mkelI~k-------~r~eL~elw~~~~ 340 (595)
|.|.+.-|..=|+..+.. ...++.++|..++
T Consensus 177 l~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~ 214 (216)
T cd07627 177 LERFERERVEDFRNSVEIYLESAIESQKELIELWETFY 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888887777766655433 5678889998653
No 116
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=36.09 E-value=12 Score=42.71 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007622 66 SRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAG 145 (595)
Q Consensus 66 ~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~ 145 (595)
.++...++|..++.-|+.||.... ||=..++.|..-|+.|+++......+.......++
T Consensus 429 ~~~~~~~ei~~lr~~iQ~l~~s~~-------------PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~~l~-------- 487 (539)
T PF10243_consen 429 ERESVEKEIEKLRESIQTLCRSAN-------------PLGKLMDYIQEDIDSMQKELEMWRSEYRQHAEALQ-------- 487 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHhcc-------------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 345555566666666666665432 55566777778888888776555555433222211
Q ss_pred CCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 146 LSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRS 198 (595)
Q Consensus 146 ~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~ 198 (595)
.+...|..-++-|+.+|.+|+....+-..++..+...|..
T Consensus 488 -------------~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~Il~ 527 (539)
T PF10243_consen 488 -------------EEQSITDEALEPLKAQLAELEQQIKDQQDKICAVKANILK 527 (539)
T ss_dssp -----------------------------------------------------
T ss_pred -------------HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1223566778888899999999888888888877777653
No 117
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.78 E-value=4.3e+02 Score=25.86 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 007622 67 RARLHQELAESEAEFTHLLLSLG 89 (595)
Q Consensus 67 k~~L~q~Ia~~~~El~~L~~eLg 89 (595)
+..+...|+.++.+...|-..+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~ 144 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQ 144 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544443
No 118
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=35.47 E-value=7.4e+02 Score=28.49 Aligned_cols=270 Identities=17% Similarity=0.193 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----H
Q 007622 43 KVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALRE----M 118 (595)
Q Consensus 43 ~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~----L 118 (595)
.++..+..+. ..+..++++.=..-..+...+=+--.+|..=+..|-..-|. +++ ..+...+..++.++.. +
T Consensus 198 e~l~~l~~~~-~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~-~~~---~~i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 198 EILDQLEEEL-AALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYH-LDH---LDIEKEIQDLKEQIDENLALL 272 (569)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC-CCC---CChHHHHHHHHHHHHHHHHHH
Confidence 4566665553 34455555543333333333333334444555555443332 222 2455666666666665 2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 007622 119 RLRK-EERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDL-SLKKLEEYQIELQGLHNEKNDRLQR-------- 188 (595)
Q Consensus 119 rk~K-~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dl-S~~~L~~l~~~L~~Lq~EK~~Rl~k-------- 188 (595)
..-. ..=-..+..+..+|..+.+.|..--. . ...|..... ..+.|..++.....|..|...=-+.
T Consensus 273 ~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~-A----~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~ 347 (569)
T PRK04778 273 EELDLDEAEEKNEEIQERIDQLYDILEREVK-A----RKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESEL 347 (569)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhH
Confidence 2221 12223455566666666664422110 0 001111111 2344555555555555444332222
Q ss_pred --HHHHHHHHHHHHHHcCCCchhhhhhccCccccccc------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 189 --VEKYIDAVRSLSATLGMESSMIITKVHPSLSELFG------ISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKA 260 (595)
Q Consensus 189 --v~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~------~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~ 260 (595)
+..+...|..+...+.-. ...+......+..+.. +...--......+...+..|...-..-..++..+...
T Consensus 348 ~~~~~lekeL~~Le~~~~~~-~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 348 ESVRQLEKQLESLEKQYDEI-TERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444311 1111111111111000 0000011123333344444444333333445555555
Q ss_pred HHHHH------HHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHH-HHHHHHHHHHHHHHHhHHHHH
Q 007622 261 LTNLW------NLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIE-QAEAEVKRLDQLKASKMQELF 325 (595)
Q Consensus 261 L~~LW------~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~-~~e~Ev~RLe~lK~~~mkelI 325 (595)
+..+= ++=++|..+...|..+..-|..-...+.. |.+..+.|+ .++....|++.|..+ ...|+
T Consensus 427 L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q-~~dL~ 496 (569)
T PRK04778 427 LHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEE-TEELV 496 (569)
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 54433 24578889999998887666555556666 889999999 999999999999887 34444
No 119
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.44 E-value=4.3e+02 Score=25.79 Aligned_cols=84 Identities=13% Similarity=0.258 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CC---CCCCCCCCCHHHHHHHHHHHHHHHH
Q 007622 52 CLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERS---------LP---GRPEKMTGTLKEQLDSITPALREMR 119 (595)
Q Consensus 52 ~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~---------~~---~~~~~~~~tL~eql~~l~~~LE~Lr 119 (595)
+-.+||..++++...-+.|..+|..+..++..+..+|.... +. ......-..|-.++..++.++.+|+
T Consensus 82 vN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 82 VNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999988885321 11 1112222345566777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007622 120 LRKEERVNQFRAVQAQIQK 138 (595)
Q Consensus 120 k~K~eR~~ef~~l~~qi~~ 138 (595)
..-+ ..+.+++.++..
T Consensus 162 ~~Te---rdL~~~r~e~~r 177 (182)
T PF15035_consen 162 TATE---RDLSDMRAEFAR 177 (182)
T ss_pred HHHH---hhHHHHHHHHHH
Confidence 6654 344444444443
No 120
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=34.75 E-value=6.1e+02 Score=27.26 Aligned_cols=198 Identities=14% Similarity=0.171 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCCCCCCCCHHHHHH---------HHHHHHHHHH
Q 007622 52 CLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLP---GRPEKMTGTLKEQLD---------SITPALREMR 119 (595)
Q Consensus 52 ~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~---~~~~~~~~tL~eql~---------~l~~~LE~Lr 119 (595)
...+|+...++. .++.+...|..+..++......|+.|..- ..+..-+.+|.+.-. .|...+.+|.
T Consensus 7 a~s~Y~erk~~l--Vr~~~~~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l~ 84 (353)
T cd09236 7 AISIYDDRKDRL--VNESIIDELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQEDGLERIRASLDDVA 84 (353)
T ss_pred HHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456777776665 34445677788888899999999875311 011222234555322 3334444444
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCcccccCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 120 LRK---EERVNQFRAVQAQIQKISAEIAGLSEYDD-SSTNVIVNENDLS---LKKLEEYQIELQGLHNEKNDRLQRVEKY 192 (595)
Q Consensus 120 k~K---~eR~~ef~~l~~qi~~lc~eL~~~~~~~~-~~~~~~vd~~dlS---~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l 192 (595)
+.+ .+.+.+...+......=|..+-. .|+. .-..+ ....++ ..++..|+.+|+.-..-= ..|...
T Consensus 85 ~l~~~~~~~L~e~~~~L~~E~~ed~~~R~--k~g~~~Wtr~--~S~~~~~~l~~~~~~~~~~L~~A~~sD----~~v~~k 156 (353)
T cd09236 85 RLAASDRAILEEAMDILDDEASEDESLRR--KFGTDRWTRP--DSHEANPKLYTQAAEYEGYLKQAGASD----ELVRRK 156 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHH
Confidence 444 44444444444444443332211 1221 11111 000112 245555555555332222 234455
Q ss_pred HHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 193 IDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALT 262 (595)
Q Consensus 193 ~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~ 262 (595)
...+.....+|..+... +....|+...... +.. ....+..|+..+.+|...+.+|...+.+|+..+.
T Consensus 157 ~~~~~~~l~lL~~~~~~-l~~~~Ps~~~~~~-~~~-~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 157 LDEWEDLIQILTGDERD-LENFVPSSRRPSI-PPE-LERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred HHHHHHHHHHHcCCHHH-HHHhCCCCCCCCC-Cch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777655544 3333455322110 111 2456999999999999999999999998877654
No 121
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.20 E-value=6.9e+02 Score=27.77 Aligned_cols=138 Identities=16% Similarity=0.255 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 007622 41 REKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRL 120 (595)
Q Consensus 41 R~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk 120 (595)
.++-+.++.+++ .-....+.+.....+.|.+.|++.+.++..|-.+|-+.... ---+...++.+...++.|..
T Consensus 36 ~~~~l~q~q~ei-~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~------l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 36 DDKQLKQIQKEI-AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD------LKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHhhHHHHHHHHHHHHH
Confidence 344555665553 34478889999999999999999999999999988653311 01245567788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 121 RKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKK---LEEYQIELQGLHNEKNDRLQRVEKYIDAVR 197 (595)
Q Consensus 121 ~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~---L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~ 197 (595)
++.+|...+..+.. .+.- .+..|+.. .. +|.+. =..+..++..+..+..++...+......|.
T Consensus 109 q~r~qr~~La~~L~---A~~r-~g~~p~~~-----ll-----~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 109 QEREQRRRLAEQLA---ALQR-SGRNPPPA-----LL-----VSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLA 174 (420)
T ss_pred HHHHHHHHHHHHHH---HHHh-ccCCCCch-----hh-----cChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88555555444333 2222 33333211 11 23332 244556666666666666555444444444
Q ss_pred HH
Q 007622 198 SL 199 (595)
Q Consensus 198 ~L 199 (595)
..
T Consensus 175 ~~ 176 (420)
T COG4942 175 AV 176 (420)
T ss_pred HH
Confidence 44
No 122
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.67 E-value=8.2e+02 Score=28.17 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 225 SKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGK 259 (595)
Q Consensus 225 ~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~ 259 (595)
...+++.-...++..+.+|-.+-....+++..+..
T Consensus 703 ~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 703 TYILSAYQRKCIQSILKELGEHIREMVKQVKDIRN 737 (741)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777888888887777777777666554
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.65 E-value=5.9e+02 Score=26.50 Aligned_cols=147 Identities=22% Similarity=0.296 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHH
Q 007622 103 TLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEK 182 (595)
Q Consensus 103 tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK 182 (595)
++-..+..=...+.++.+.+..-..++..+..+|..+...+..... +.|=+...|..|+..|..+....
T Consensus 28 ~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~-----------~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 28 LLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQK-----------EIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444477777788888888888888899999999888887643221 11347788999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------HHHHc-CC-CchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 183 NDRLQRVEKYIDAVRS------LSATL-GM-ESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKL 254 (595)
Q Consensus 183 ~~Rl~kv~~l~~~I~~------L~~~L-g~-d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl 254 (595)
.+|...|..-...+.. +.++| +- +|.+.+..| +.+. .-.+.....|..+......|++.+.....++
T Consensus 97 ~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRv----tAi~-~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~ 171 (265)
T COG3883 97 VERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRV----TAIS-VIVDADKKILEQQKEDKKSLEEKQAALEDKL 171 (265)
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHH----HHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887666655542 12221 11 111111111 0000 1112244557777777777777777666665
Q ss_pred HHHHHHHHHHH
Q 007622 255 HQLGKALTNLW 265 (595)
Q Consensus 255 ~~L~~~L~~LW 265 (595)
+.|..-..+|=
T Consensus 172 e~l~al~~e~e 182 (265)
T COG3883 172 ETLVALQNELE 182 (265)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 124
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=32.50 E-value=3.6e+02 Score=31.17 Aligned_cols=62 Identities=6% Similarity=0.088 Sum_probs=48.8
Q ss_pred hHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHcCCeeEE--cC-----ccHHHHHHH-HHHHHHhHHHHHH
Q 007622 424 LRRAERARVTVKKI-PALVDSLFAMTKSWEEERKKVFLY--DE-----VPLLAMLEE-YNMARQEREEEKQ 485 (595)
Q Consensus 424 LlreEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~--dG-----~~ll~~l~e-~~~~r~eKE~ek~ 485 (595)
..+.|....-++.+ +...+.|...=.+|++.+|-||++ +| ..--++|.+ ...+....|+|..
T Consensus 85 ~S~~EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~fvi~v~~~~a~g~~~~~il~~~~~Rl~n~~~~E~~ 155 (591)
T PRK13590 85 ESTHEQGKAGLTHCTPEEFARIQQLNADYNARFGFPFILAVRGPRGLGLSRQEIIATFARRLDNHPDFELA 155 (591)
T ss_pred HhHHHHHhhhcccCCHHHHHHHHHHHHHHHHhCCCeEEEEEcCccccCCCHHHHHHHHHHHhCCCHHHHHH
Confidence 45667666677774 888899999999999999999999 55 677888887 6666667777753
No 125
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.17 E-value=5.6e+02 Score=26.05 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHH
Q 007622 165 LKKLEEYQIELQGLHNEKNDRLQ-----RVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNST 239 (595)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~Rl~-----kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~ 239 (595)
+..|.+....+..+...-+.... .+.+|+..|..+-..+. .=...+ ....-...+|.+-+..
T Consensus 82 l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~--------~R~k~~-----~~~~~a~~~L~kkr~~ 148 (234)
T cd07664 82 LSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFD--------QRMKCW-----QKWQDAQVTLQKKREA 148 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH--------HHHHHH-----HHHHHHHHHHHHHHHH
Confidence 45677777777777655555433 33333333333322221 100000 0111234445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007622 240 VESLEEEKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKAS 319 (595)
Q Consensus 240 ~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~ 319 (595)
+.+|.. ..+-.+++.+..++.++=.+.. .-+..|..+ -+....||.|.+.-|..
T Consensus 149 ~~Kl~~--~~k~dK~~~~~~ev~~~e~~~~---~a~~~fe~I---------------------s~~~k~El~rFe~er~~ 202 (234)
T cd07664 149 EAKLQY--ANKPDKLQQAKDEIKEWEAKVQ---QGERDFEQI---------------------SKTIRKEVGRFEKERVK 202 (234)
T ss_pred HHHHhh--cCchhHHHHHHHHHHHHHHHHH---HHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 444421 1233455566666655433332 223445443 34577888888888877
Q ss_pred hHHHHHHH-------HHHHHHHHHHhcC
Q 007622 320 KMQELFLK-------KQKELEDICNNSH 340 (595)
Q Consensus 320 ~mkelI~k-------~r~eL~elw~~~~ 340 (595)
=|+..+.. ...++.++|...+
T Consensus 203 dfk~~l~~fles~ie~qke~ie~We~f~ 230 (234)
T cd07664 203 DFKTVIIKYLESLVQTQQQLIKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66655544 6678899998764
No 126
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.96 E-value=6.1e+02 Score=26.90 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHcCCCchh
Q 007622 192 YIDAVRSLSATLGMESSM 209 (595)
Q Consensus 192 l~~~I~~L~~~Lg~d~~~ 209 (595)
.+--++.|...|++.+..
T Consensus 178 ~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 178 TALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHhCCCccc
Confidence 455566777788887644
No 127
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.71 E-value=8.4e+02 Score=27.96 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007622 226 KNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLM 268 (595)
Q Consensus 226 ~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L 268 (595)
..+.+..++.+...+..++..+...-..+.++...+..+=..|
T Consensus 296 l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL 338 (563)
T TIGR00634 296 LEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEEL 338 (563)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3456777888888888777766655544555555554443333
No 128
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.59 E-value=4.1e+02 Score=30.12 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 60 VDRANISRARLHQELAESEAEFTHLLLSLGERSL-PGRP-----EKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQ 133 (595)
Q Consensus 60 V~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~-~~~~-----~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~ 133 (595)
+++++...+.+...++.+++++. ++..++.... +... ......+.+.+..+..++.+++....+--.++.++.
T Consensus 80 l~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
T TIGR02231 80 IRELEAELRDLEDRGDALKALAK-FLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELE 158 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555666666553 3344443210 0000 111123666788888999999988888888888888
Q ss_pred HHHHHHHHHhcC
Q 007622 134 AQIQKISAEIAG 145 (595)
Q Consensus 134 ~qi~~lc~eL~~ 145 (595)
.+|..+-.+|..
T Consensus 159 ~~l~~l~~~l~~ 170 (525)
T TIGR02231 159 KQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHh
Confidence 888888777643
No 129
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.14 E-value=7.7e+02 Score=27.40 Aligned_cols=94 Identities=17% Similarity=0.272 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007622 106 EQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDR 185 (595)
Q Consensus 106 eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~R 185 (595)
++++.++..++.+.+.-.+=.+++..+..+|..+-.+|.....-... ..++-+=...+|..+...|..|+.++..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~----s~~~l~~~~~~I~~~~~~l~~l~~q~r~q 113 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE----TADDLKKLRKQIADLNARLNALEVQEREQ 113 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56666777777776666666666666666666665555322210000 00111124678888889999999988666
Q ss_pred HHHHHHHHHHHHHHHHHcCCCc
Q 007622 186 LQRVEKYIDAVRSLSATLGMES 207 (595)
Q Consensus 186 l~kv~~l~~~I~~L~~~Lg~d~ 207 (595)
...+..++..+ ..+|.+|
T Consensus 114 r~~La~~L~A~----~r~g~~p 131 (420)
T COG4942 114 RRRLAEQLAAL----QRSGRNP 131 (420)
T ss_pred HHHHHHHHHHH----HhccCCC
Confidence 66555555444 4555554
No 130
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=31.08 E-value=3.1e+02 Score=32.05 Aligned_cols=142 Identities=16% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHH
Q 007622 230 DNILAKLNSTVESLEEEKKKRLEKLHQLGKALTN--LWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAE 307 (595)
Q Consensus 230 ~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~--LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e 307 (595)
...++.+...+..|.+++.+-.++++.+...+.. -|..+++|.+.-.....+... .|.++.+..+...
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~ld~~l~~~~~~~~~~~~----------~G~i~~~~~~~~~ 161 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVF----------VGTVPEDKLEELK 161 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHhCCCCcEEEE----------EEEecchhhhhHH
Confidence 3456777777777777777777777777766654 499999988643322222111 2223333333210
Q ss_pred HHHHH-----HHHHHHHh-HHHHH-HHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHH
Q 007622 308 AEVKR-----LDQLKASK-MQELF-LKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEE 380 (595)
Q Consensus 308 ~Ev~R-----Le~lK~~~-mkelI-~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~ 380 (595)
.+..- +..-+... +=-+. .+...++.++++.++++.-. +.. .-.+.+.++.++.++..++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~----------~p~-~~~p~~~l~~l~~~l~~l~~~ 230 (646)
T PRK05771 162 LESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLE----------LEE-EGTPSELIREIKEELEEIEKE 230 (646)
T ss_pred hhccCceEEEEEecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEec----------CCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 00000 00000000 00000 13345666777766666211 111 223789999999999998887
Q ss_pred HhhchHHHHHHH
Q 007622 381 ASSRKVIMEKVE 392 (595)
Q Consensus 381 ~~~~k~Ile~ve 392 (595)
.+.-+.-+..+.
T Consensus 231 ~~~~~~~l~~~~ 242 (646)
T PRK05771 231 RESLLEELKELA 242 (646)
T ss_pred HHHHHHHHHHHH
Confidence 776655555443
No 131
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=30.99 E-value=6.8e+02 Score=26.71 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhHhCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 007622 22 YLLQELQMIWDEVGEDQFER-----EKVLLDLEQECLDVYRRKVDRANISRARLHQE----------LAESEAEFTHLLL 86 (595)
Q Consensus 22 ~ll~eLq~IWdEIG~~e~eR-----~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~----------Ia~~~~El~~L~~ 86 (595)
+++.+|..+=.|+|.|...= ..-+ .-...|+-++.=.+.|....|--..+. =.....++..+|.
T Consensus 62 ~f~~Els~~L~El~CPy~~L~~G~~~~rl-~~~~~~l~LL~fL~sELqaarl~~~k~~~~~~~~~~~~s~~~~~l~~i~~ 140 (318)
T PF10239_consen 62 SFLLELSGFLKELGCPYSALTSGDISDRL-QSKEDRLLLLEFLCSELQAARLLAKKKPEEPEQEEEKESEVAQELKAICQ 140 (318)
T ss_pred HHHHHHHHHHHhcCCCcHHHcCCcchhhh-cCHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccHHHHHHHHHHH
Confidence 47888888888888886521 0000 001122223333333332222111111 1345568899999
Q ss_pred HhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHH
Q 007622 87 SLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLK 166 (595)
Q Consensus 87 eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~ 166 (595)
.||.+.. ..+.+..+.+..|..+++++ ...+. +.+ ...|.+ ...||.+
T Consensus 141 ~L~l~~p-----~~~i~~~~lf~~i~~ki~~~---------------------L~~lp--~~~---~~~PLl-~~~L~~~ 188 (318)
T PF10239_consen 141 ALGLPKP-----PPNITASQLFSKIEAKIEEL---------------------LSKLP--PGH---MGKPLL-KKSLTDE 188 (318)
T ss_pred HhCCCCC-----CCCCCHHHHHHHHHHHHHHH---------------------HHhcC--ccc---cCCCCc-CCCCCHH
Confidence 9997542 22356666666666555433 22221 111 112333 4569999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007622 167 KLEEYQIELQGLHNEKNDRLQR 188 (595)
Q Consensus 167 ~L~~l~~~L~~Lq~EK~~Rl~k 188 (595)
+.+.+...-+.|..|+.-|.+.
T Consensus 189 Qw~~Le~i~~~L~~EY~~RR~m 210 (318)
T PF10239_consen 189 QWEKLEKINQALSKEYECRRQM 210 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 132
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.41 E-value=1.3e+03 Score=29.98 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007622 174 ELQGLHNEKNDRLQRVEKYIDAVRSLSATLG 204 (595)
Q Consensus 174 ~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg 204 (595)
.+..++.+.+.-......+......++.+.|
T Consensus 457 qL~elE~kL~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 457 ELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333344444444444444444
No 133
>PRK14127 cell division protein GpsB; Provisional
Probab=29.97 E-value=4e+02 Score=23.95 Aligned_cols=49 Identities=27% Similarity=0.249 Sum_probs=28.2
Q ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007622 34 VGEDQFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGE 90 (595)
Q Consensus 34 IG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge 90 (595)
-|++.+|=+..|.++-++.-.+ ... ...|...++.+++++..+-..+..
T Consensus 21 RGYd~~EVD~FLd~V~~dye~l-~~e-------~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYEAF-QKE-------IEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3899988777777665553222 222 445555555555555555555443
No 134
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.86 E-value=2.6e+02 Score=29.24 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHH
Q 007622 234 AKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRL 313 (595)
Q Consensus 234 ~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RL 313 (595)
++|+.++-+=.++...+.+-+-.-....+.|..++..-.|-++.....+..+ +++-...-..+..-++||
T Consensus 8 ~~~~~~i~k~nee~~~~~~~~~k~~e~~qkl~sr~~~~~ekke~i~r~n~k~----------~d~v~~~~~~~~~~~erl 77 (359)
T KOG4398|consen 8 EQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKL----------GDLVEKKTIDLRSHYERL 77 (359)
T ss_pred HHHHHHHhcCcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----------chHHHHHHHHHHHHHHHH
Confidence 3444444333333333333333333444455555555555555555555332 222222222345668899
Q ss_pred HHHHHHhHHHHH
Q 007622 314 DQLKASKMQELF 325 (595)
Q Consensus 314 e~lK~~~mkelI 325 (595)
..|+.++|.+|+
T Consensus 78 ~~lr~shi~el~ 89 (359)
T KOG4398|consen 78 ANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHH
Confidence 999999988876
No 135
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.76 E-value=5.6e+02 Score=24.98 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007622 162 DLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLG 204 (595)
Q Consensus 162 dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg 204 (595)
.+|.+.|.-|...+..|+..+..-.+.+..+-.+|..|.+.|-
T Consensus 75 ~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 75 MVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT 117 (201)
T ss_pred CCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999999999999888888888888888888765553
No 136
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.39 E-value=4.9e+02 Score=29.64 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 48 LEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVN 127 (595)
Q Consensus 48 leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ 127 (595)
...||..++. .++.+.+.|..+..++..+...+..|-++|-... ..=.+|+..+..+|-.|..+-.....
T Consensus 439 f~~Ec~aL~~-rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr---------~NYE~QLs~MSEHLasmNeqL~~Q~e 508 (518)
T PF10212_consen 439 FYAECRALQK-RLESAEKEKESLEEELKEANQNISRLQDELETTR---------RNYEEQLSMMSEHLASMNEQLAKQRE 508 (518)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566765544 4788888888899999999999999998886422 24557888888888888877666666
Q ss_pred HHHHHH
Q 007622 128 QFRAVQ 133 (595)
Q Consensus 128 ef~~l~ 133 (595)
+|..++
T Consensus 509 eI~~LK 514 (518)
T PF10212_consen 509 EIQTLK 514 (518)
T ss_pred HHHHHh
Confidence 665554
No 137
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.63 E-value=1e+03 Score=27.58 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 106 EQLDSITPALREMRLRKEERVNQFRAVQAQIQKISA 141 (595)
Q Consensus 106 eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~ 141 (595)
+....++..|+.++....++.++..-++-|++.|-.
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~ 199 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQFQLEELEE 199 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788888888888888888888888887766
No 138
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.52 E-value=6.7e+02 Score=25.49 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 166 KKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSL 199 (595)
Q Consensus 166 ~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L 199 (595)
..|.+|......|..|+...++.+..+-..|..|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l 65 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTL 65 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777888888888877777665555555543
No 139
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=27.27 E-value=1.4e+03 Score=29.07 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 007622 73 ELAESEAEFTHLLLSLGER 91 (595)
Q Consensus 73 ~Ia~~~~El~~L~~eLge~ 91 (595)
.+..+++.|..+-..|+.+
T Consensus 1202 ~f~~me~kl~~ir~il~~~ 1220 (1758)
T KOG0994|consen 1202 RFLDMEEKLEEIRAILSAP 1220 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3455566666666666654
No 140
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.84 E-value=1.2e+03 Score=28.12 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHH
Q 007622 301 NIIEQAEAEVKRLDQLKASKMQELFLKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEE 380 (595)
Q Consensus 301 ~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~ 380 (595)
-||.+-.+||.||.+|-+. .+.-...+--- ++.|. +-...|..-+--||+.||.++-. +-
T Consensus 529 itlrQrDaEi~RL~eLtR~--------LQ~Sma~lL~d--ls~D~--------ar~Kp~~nLTKSLLniyEkqlQ~--dp 588 (861)
T PF15254_consen 529 ITLRQRDAEIERLRELTRT--------LQNSMAKLLSD--LSVDS--------ARCKPGNNLTKSLLNIYEKQLQH--DP 588 (861)
T ss_pred hHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhh--ccccc--------cccCCcchhHHHHHHHHHHhhcC--CC
Confidence 3889999999999988764 22222222221 22221 12234433378899999988642 22
Q ss_pred HhhchHHHHHHHHH
Q 007622 381 ASSRKVIMEKVERW 394 (595)
Q Consensus 381 ~~~~k~Ile~vekw 394 (595)
+--+-.||.-..|.
T Consensus 589 ~p~~tSIMsYLkkL 602 (861)
T PF15254_consen 589 APAHTSIMSYLKKL 602 (861)
T ss_pred CCccchHHHHHHhh
Confidence 23334456555555
No 141
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.55 E-value=6.4e+02 Score=24.97 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 57 RRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQI 136 (595)
Q Consensus 57 ~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi 136 (595)
.+.|+-+...-++|...|.+++.++..+-.++.. .-++.+.+..++.-+-.+...+..-+.+-..+..+.
T Consensus 28 ~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~----------aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 28 QRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK----------AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566677777777777777777666652 126778888888888888888888888888888888
Q ss_pred HHHHHHhc
Q 007622 137 QKISAEIA 144 (595)
Q Consensus 137 ~~lc~eL~ 144 (595)
+.|.++|+
T Consensus 98 q~L~~~i~ 105 (193)
T PF14662_consen 98 QSLVAEIE 105 (193)
T ss_pred HHHHHHHH
Confidence 88888774
No 142
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.14 E-value=7.3e+02 Score=26.06 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 232 ILAKLNSTVESLEEEKKKRLEKLHQLGKALTN 263 (595)
Q Consensus 232 ~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~ 263 (595)
+|-.|+..+..-+..-..|..+|.+|+.+|..
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~R 100 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLAR 100 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45555655555555556688888888888764
No 143
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=25.93 E-value=7.7e+02 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 164 SLKKLEEYQIELQGLHNEKNDRLQR 188 (595)
Q Consensus 164 S~~~L~~l~~~L~~Lq~EK~~Rl~k 188 (595)
|..+|.-+..++..|+.|.+.-...
T Consensus 50 s~~ql~ll~~~~k~L~aE~~qwqk~ 74 (268)
T PF11802_consen 50 SDAQLSLLMMRVKCLTAELEQWQKR 74 (268)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777788887766554
No 144
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=25.67 E-value=8.4e+02 Score=26.03 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCC---CCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 007622 73 ELAESEAEFTHLLLSLGERSLPGRP---EKM---TGTLKEQLDSITPALREMRLRKEERVNQ-------FRAVQAQIQKI 139 (595)
Q Consensus 73 ~Ia~~~~El~~L~~eLge~~~~~~~---~~~---~~tL~eql~~l~~~LE~Lrk~K~eR~~e-------f~~l~~qi~~l 139 (595)
+.....-|+..+..+||=|.-.... ... ...-+..+..|-.+|...|--...+... -.++...++.+
T Consensus 59 d~~~f~~Els~~L~El~CPy~~L~~G~~~~rl~~~~~~l~LL~fL~sELqaarl~~~k~~~~~~~~~~~~s~~~~~l~~i 138 (318)
T PF10239_consen 59 DAESFLLELSGFLKELGCPYSALTSGDISDRLQSKEDRLLLLEFLCSELQAARLLAKKKPEEPEQEEEKESEVAQELKAI 138 (318)
T ss_pred hHHHHHHHHHHHHHhcCCCcHHHcCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccHHHHHHHHH
Confidence 3455788999999999854210000 000 0112334666777777666555443332 24466678888
Q ss_pred HHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccc
Q 007622 140 SAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLS 219 (595)
Q Consensus 140 c~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~ 219 (595)
|..|+-..+.. +++.. .. |..+...|..+...+ |...+.+ |.|
T Consensus 139 ~~~L~l~~p~~-----------~i~~~------~l--------------f~~i~~ki~~~L~~l---p~~~~~~--PLl- 181 (318)
T PF10239_consen 139 CQALGLPKPPP-----------NITAS------QL--------------FSKIEAKIEELLSKL---PPGHMGK--PLL- 181 (318)
T ss_pred HHHhCCCCCCC-----------CCCHH------HH--------------HHHHHHHHHHHHHhc---CccccCC--CCc-
Confidence 88775433210 11211 11 222222333333333 2322322 444
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q 007622 220 ELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNLMGTPY 272 (595)
Q Consensus 220 ~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~L~~p~ 272 (595)
..+|++.-..+|...-+.|..+..-|.+.+- .+|++..
T Consensus 182 -----~~~L~~~Qw~~Le~i~~~L~~EY~~RR~mLl----------kRLDVTv 219 (318)
T PF10239_consen 182 -----KKSLTDEQWEKLEKINQALSKEYECRRQMLL----------KRLDVTV 219 (318)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hhhhhee
Confidence 4678999999999999999888888877543 4677754
No 145
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.48 E-value=7.2e+02 Score=25.17 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 56 YRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQ 135 (595)
Q Consensus 56 y~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~q 135 (595)
....+++...++..+.+++..+.+|+..|-.... .+..+++.....++.|..+.++...--.++..-
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~-------------~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNE-------------QLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777788888888888888887765332 233444555555555554444444444444444
Q ss_pred HHHHHHHh
Q 007622 136 IQKISAEI 143 (595)
Q Consensus 136 i~~lc~eL 143 (595)
+....+.|
T Consensus 107 m~~m~~~L 114 (251)
T PF11932_consen 107 MEQMIDEL 114 (251)
T ss_pred HHHHHHHH
Confidence 44444444
No 146
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.24 E-value=1.1e+03 Score=27.46 Aligned_cols=46 Identities=30% Similarity=0.401 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCChhH
Q 007622 229 SDNILAKLNSTVESLEEEKKKRLEKLHQLGK------ALTNLWNLMGTPYND 274 (595)
Q Consensus 229 S~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~------~L~~LW~~L~~p~ee 274 (595)
+.+-|..+-.+...+++.+.+++.++..... .+..+|+.+....+.
T Consensus 7 ~~~~l~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~ 58 (611)
T KOG2398|consen 7 STKELADFVRERASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEA 58 (611)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHH
Confidence 4455777778888888888888888754333 688999998887664
No 147
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=24.68 E-value=94 Score=33.99 Aligned_cols=83 Identities=20% Similarity=0.301 Sum_probs=48.7
Q ss_pred ChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhhHH
Q 007622 271 PYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQ-AEAEVKRLDQLKASKMQELFLKKQKELEDICNNSHMEIPSQSKM 349 (595)
Q Consensus 271 p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~-~e~Ev~RLe~lK~~~mkelI~k~r~eL~elw~~~~~~~~~~~~~ 349 (595)
|.+||+.|......+.+ ..+.|+. ++..++.|+++|++.|.+++. -+|..=|...+-+
T Consensus 371 pl~EQ~kI~~~l~~l~~-----------~~d~i~~~~~~~l~~L~~lKqslLqk~ft---G~l~~~~~~~~~~------- 429 (461)
T PRK09737 371 PLEEQAEIVRRVEQLFA-----------YADTIEKQVNNALARVNNLTQSILAKAFR---GELTAQWRAENPS------- 429 (461)
T ss_pred CHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CccccccchhCcc-------
Confidence 35889999876533200 1244444 477889999999999998873 3443334222111
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHHHHHHH
Q 007622 350 DKITSLLNSGEIDHADLLTSMDEQISRAKEE 380 (595)
Q Consensus 350 ~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~ 380 (595)
.+ +++--.+.||+.+-+|-+..-..
T Consensus 430 -----~~-~~~~~~~~~~~~~~~~~~~~~~~ 454 (461)
T PRK09737 430 -----LI-SGENSAAALLEKIKAERAASGGK 454 (461)
T ss_pred -----cc-CCcChHHHHHHHHHHHHhhccCC
Confidence 12 22333788998887766554333
No 148
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=24.50 E-value=3.3e+02 Score=25.26 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=9.3
Q ss_pred HHHHHHHcCCCchhhh
Q 007622 196 VRSLSATLGMESSMII 211 (595)
Q Consensus 196 I~~L~~~Lg~d~~~~~ 211 (595)
+....+.||+|....+
T Consensus 96 V~~aL~rLgvPs~~dv 111 (132)
T PF05597_consen 96 VARALNRLGVPSRKDV 111 (132)
T ss_pred HHHHHHhcCCCCHHHH
Confidence 5556667776655444
No 149
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.28 E-value=1.5e+03 Score=28.53 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=13.2
Q ss_pred HHHHHHHcCCeeEEcCccHHHHHHHHHH
Q 007622 448 TKSWEEERKKVFLYDEVPLLAMLEEYNM 475 (595)
Q Consensus 448 l~~wE~e~g~~Fl~dG~~ll~~l~e~~~ 475 (595)
|.+--.-...||.|=.+ +-..|++++.
T Consensus 1080 lFAi~~~~PaPf~vLDE-VDAaLD~~Nv 1106 (1163)
T COG1196 1080 LFAIQKYRPAPFYVLDE-VDAALDDANV 1106 (1163)
T ss_pred HHHHHhhCCCCeeeecc-chhhccHHHH
Confidence 34444456678877322 2234444444
No 150
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.07 E-value=1.3e+03 Score=27.79 Aligned_cols=28 Identities=11% Similarity=0.331 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007622 117 EMRLRKEERVNQFRAVQAQIQKISAEIA 144 (595)
Q Consensus 117 ~Lrk~K~eR~~ef~~l~~qi~~lc~eL~ 144 (595)
.++.++..+..++..|..+++.|...|.
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3777888888899999999998888774
No 151
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.01 E-value=1.1e+03 Score=26.78 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 50 QECLDVYRRKVDRANISRARLHQELAESEAEFTHLLL 86 (595)
Q Consensus 50 qe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~ 86 (595)
+..++..-..|.++++.-+.-.-.|+.++..+..|..
T Consensus 354 r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~ 390 (508)
T KOG3091|consen 354 RIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSH 390 (508)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 4455556667777777767777777777777776654
No 152
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=23.54 E-value=6.5e+02 Score=29.85 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 54 DVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPG---RPEKMTGTLKEQLDSITPALREMRLRKEERVNQFR 130 (595)
Q Consensus 54 ~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~---~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~ 130 (595)
+.++..+...+...+.|.+.++.++.+|..++-. |... +. ...-..-|..+-...-...|+.|+.+-+.
T Consensus 506 ~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~-g~~~-~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~------ 577 (722)
T PF05557_consen 506 NELQKEIEELERENERLRQELEELESELEKLTLQ-GEFN-PSKTRVLHLRDNPTSKAEQIKKSTLEALQAENED------ 577 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-T--B-TTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccC-CCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHH------
Confidence 3456677777777777777777777777654310 2110 10 00011234544444445556666655332
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCc
Q 007622 131 AVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRS-LSATLGMES 207 (595)
Q Consensus 131 ~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~-L~~~Lg~d~ 207 (595)
+..++..+-. ++..+. +.+...........+..++..+..+++...+-.+.|..-...... ++..||+..
T Consensus 578 -L~~~l~~le~--~~~~~~----~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGyki 648 (722)
T PF05557_consen 578 -LLARLRSLEE--GNSQPV----DAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGYKI 648 (722)
T ss_dssp -HHHHHHHHTT--TT--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEE
T ss_pred -HHHHHHhccc--CCCCCc----ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccee
Confidence 3333322211 111111 111111223445678899999998875544443333333333333 334567643
No 153
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.73 E-value=2.1e+02 Score=31.17 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 232 ILAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWNL 267 (595)
Q Consensus 232 ~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~~ 267 (595)
.|..|...+..+...-....+.+..+...|..||++
T Consensus 152 ris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 152 RISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 355566666666555555566677888899999997
No 154
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=22.32 E-value=1.1e+03 Score=26.02 Aligned_cols=141 Identities=13% Similarity=0.151 Sum_probs=72.8
Q ss_pred ccchHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 007622 16 LETSCGYLLQELQMIWDEVGEDQFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPG 95 (595)
Q Consensus 16 ~~~~c~~ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~ 95 (595)
+.|..+.+.+.|..=-+.|.-...+-.+.-+++|+.+. -....++.-.++-+.-.++++..|.-=..
T Consensus 279 m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~--------a~qeakek~~KEAqareaklqaec~rQ~q----- 345 (442)
T PF06637_consen 279 MTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQ--------ASQEAKEKAGKEAQAREAKLQAECARQTQ----- 345 (442)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 34555555555554334443333332233344444421 11222444445555555666777754321
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCC-CCCCCcccccCCCCCHHHH
Q 007622 96 RPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIA------GLSEY-DDSSTNVIVNENDLSLKKL 168 (595)
Q Consensus 96 ~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~------~~~~~-~~~~~~~~vd~~dlS~~~L 168 (595)
..++.-++++..=+.|.++-+++.+++..++.++.-=.+.|. ..|.. ...+..|..+-.-+.+.-|
T Consensus 346 -------laLEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCikaKsq~~~p~~r~~~p~pnp~pidp~~l 418 (442)
T PF06637_consen 346 -------LALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIKAKSQPMTPGPRPVGPVPNPPPIDPASL 418 (442)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCCCCCCCCCCCCCCCCChHHH
Confidence 233444788888888888888888888888887764433332 11110 1011112222233567888
Q ss_pred HHHHHHHH
Q 007622 169 EEYQIELQ 176 (595)
Q Consensus 169 ~~l~~~L~ 176 (595)
++|+..+-
T Consensus 419 eefkrril 426 (442)
T PF06637_consen 419 EEFKRRIL 426 (442)
T ss_pred HHHHHHHH
Confidence 98887653
No 155
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.05 E-value=1.2e+03 Score=26.69 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhHHH
Q 007622 364 ADLLTSMDEQISRAKEEASSRKVIMEKVERWMLARDEER 402 (595)
Q Consensus 364 eelL~~~E~eI~~lk~~~~~~k~Ile~vekw~~~~~Ee~ 402 (595)
.+.+.....+|.++........==++.|.+....+.+..
T Consensus 443 ~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v 481 (560)
T PF06160_consen 443 LDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDV 481 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHH
Confidence 346667778888888877766555677766655555443
No 156
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.97 E-value=1.1e+03 Score=26.04 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhHhCCCHHHHHHHHHH---H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 22 YLLQELQMIWDEVGEDQFEREKVLLD---L--------EQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLL 86 (595)
Q Consensus 22 ~ll~eLq~IWdEIG~~e~eR~~~l~~---l--------eqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~ 86 (595)
++-+++-.|=+.|-+....||.-+.+ | -..+..+|.++-......-++|.+.+..+...+..|..
T Consensus 8 ~l~~Ki~~~~eqi~~e~~~rd~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ele~ 83 (395)
T PF10267_consen 8 HLQQKILKLKEQIKVEQTARDENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELEQ 83 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556666666666532211 1 12355677777777777788888888888888887764
No 157
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=21.96 E-value=1e+03 Score=26.67 Aligned_cols=75 Identities=29% Similarity=0.259 Sum_probs=52.7
Q ss_pred cccchHHHHHHHHHHHHhHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007622 15 LLETSCGYLLQELQMIWDEVGEDQFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGE 90 (595)
Q Consensus 15 ~~~~~c~~ll~eLq~IWdEIG~~e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge 90 (595)
+..|+--.||.-||.=||-|=+..+.-...|...-||+-.++- .-|-|-..-++|.++..++++-|+.+-.-.|.
T Consensus 64 ~satSIPalL~~lQdEWDavML~~F~LRqqL~ttrQELShaLY-qhDAAcrViaRL~kE~~eareaLa~~~~qa~a 138 (506)
T KOG0289|consen 64 PSATSIPALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHALY-QHDAACRVIARLTKERDEAREALAKLSPQAGA 138 (506)
T ss_pred CCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhhcCccccc
Confidence 3456677899999999999999999866677666666544322 23555666677777777777777766655543
No 158
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.53 E-value=4.3e+02 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007622 114 ALREMRLRKEERVNQFRAVQAQ 135 (595)
Q Consensus 114 ~LE~Lrk~K~eR~~ef~~l~~q 135 (595)
.+.+..++|..-...+.+|..+
T Consensus 120 a~nEknkeK~~Lv~~L~eLv~e 141 (159)
T PF04949_consen 120 AFNEKNKEKAQLVTRLMELVSE 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555443
No 159
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=21.40 E-value=1.2e+03 Score=26.20 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=69.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHH
Q 007622 295 PGSLTHNIIEQAEAEVKRLDQLKASKMQELFLKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQI 374 (595)
Q Consensus 295 ~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI 374 (595)
|..+|..-+..+.+.+..|.+-=...+..+..+.+...+..|+.|---.+.-.+ .+.+.|.++.++.-+....++
T Consensus 236 Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve~~k~-----~L~~~~~~~~eea~~lv~~~~ 310 (473)
T PF14643_consen 236 PPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQECLALVEKLKQ-----ELLDWKACTEEEAEELVNPEF 310 (473)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCCChHHHHHHHHHHH
Confidence 445688889999999999999999999999999999999999998654322211 122333344555555555554
Q ss_pred HHH-HHHHhhchHHHHHHHHHHHHhhHHHHHHHHcCCccccc
Q 007622 375 SRA-KEEASSRKVIMEKVERWMLARDEERWLEEYSMDENRYS 415 (595)
Q Consensus 375 ~~l-k~~~~~~k~Ile~vekw~~~~~Ee~wLE~~~~D~nR~~ 415 (595)
.-+ ...+..-..-++.+++...-. ..+.+.-..+=.+|.
T Consensus 311 ~plv~~~q~~~e~~le~l~~~~E~~--a~~~~~~~~~L~~f~ 350 (473)
T PF14643_consen 311 LPLVGELQSEFEEELEKLDKSFEEL--AKQTEAQSEDLFKFF 350 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 322 333333333333333332222 133444555555554
No 160
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=20.86 E-value=1.4e+02 Score=35.63 Aligned_cols=210 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 184 DRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALTN 263 (595)
Q Consensus 184 ~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~ 263 (595)
+|..++..-...+.+-.+.++......... ..-.....++.++..+.+++++-.+-.+..+.+..++.+
T Consensus 31 ~r~de~erkL~~le~~I~k~~~~~~~~~~~-----------~~~~~~~~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~ 99 (759)
T PF01496_consen 31 RRCDEMERKLRFLEEEIKKLKIPLPEKNDK-----------PDAPKPKEIDELEEELEELEEELRELNENLEKLEEELNE 99 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccccccc-----------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCChhHHhhHHHH-------hhhcccCccccC---------CCCCCcHHHHHHHHHHHHHHHHH----HHHhHHH
Q 007622 264 LWNLMGTPYNDRRKFSHV-------TSLLSVSSAEVS---------EPGSLTHNIIEQAEAEVKRLDQL----KASKMQE 323 (595)
Q Consensus 264 LW~~L~~p~eer~~F~~~-------~~~i~~s~~e~~---------~~~~LS~~~I~~~e~Ev~RLe~l----K~~~mke 323 (595)
|-+...+=.+++..+... ..++....+.+. -.|.+..+.++.++..+.|...- +..-+.+
T Consensus 100 L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~ 179 (759)
T PF01496_consen 100 LEEEKNVLEEEIEFLEELKLEELEPWKNLDIDLEELESSKFLNLGFIAGVIPREKIESFERILWRATRGNIFIRFSEIEE 179 (759)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHTT-----S-----
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhhccccceeeeEEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeec
Q ss_pred HH------------------HHHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhch
Q 007622 324 LF------------------LKKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSRK 385 (595)
Q Consensus 324 lI------------------~k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~k 385 (595)
.. .+...++.++|+..++. ...+....-.+.+.+...+.+|..+++....-+
T Consensus 180 ~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~----------~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~ 249 (759)
T PF01496_consen 180 ILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFE----------RYDLPEDEGTPEEAIKELEEEIEELEKELEELE 249 (759)
T ss_dssp -EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT------------B----GGGGG-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeeeeeEEEEEEchhhHHHHHHHhhccCce----------ecCCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-HHHHHHHHhhHHHHHHHHcCCcccccc
Q 007622 386 VIME-KVERWMLARDEERWLEEYSMDENRYSV 416 (595)
Q Consensus 386 ~Ile-~vekw~~~~~Ee~wLE~~~~D~nR~~~ 416 (595)
.-+. ..++|..... .|.+...+.-.+|..
T Consensus 250 ~~l~~~~~~~~~~l~--~~~~~l~~~~~~~~~ 279 (759)
T PF01496_consen 250 EELKKLLEKYAEELE--AWYEYLRKEKEIYEA 279 (759)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
No 161
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.14 E-value=5.8e+02 Score=22.16 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 107 QLDSITPALREMRLRKEERVNQFRAVQAQIQ 137 (595)
Q Consensus 107 ql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~ 137 (595)
.+..+...+..+.+....-.+++.+++..|.
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
Done!