Query 007622
Match_columns 595
No_of_seqs 252 out of 505
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrx_A Protein regulator of cy 100.0 5.8E-38 2E-42 283.6 14.1 126 375-507 3-130 (130)
2 1i84_S Smooth muscle myosin he 83.0 6.5 0.00022 47.4 12.4 73 57-142 870-942 (1184)
3 1i84_S Smooth muscle myosin he 72.3 13 0.00046 44.7 10.8 30 57-86 877-906 (1184)
4 3na7_A HP0958; flagellar bioge 68.8 90 0.0031 30.5 22.8 109 58-202 18-126 (256)
5 2lw1_A ABC transporter ATP-bin 55.0 21 0.00073 29.3 5.7 27 67-93 24-50 (89)
6 3ghg_A Fibrinogen alpha chain; 54.3 14 0.00048 40.0 5.5 90 102-199 53-143 (562)
7 3ol1_A Vimentin; structural ge 53.5 1.1E+02 0.0038 26.4 11.1 105 14-137 12-118 (119)
8 3hnw_A Uncharacterized protein 51.5 73 0.0025 28.4 9.1 102 17-144 27-134 (138)
9 1go4_E MAD1 (mitotic arrest de 50.6 54 0.0018 27.8 7.5 45 163-209 9-53 (100)
10 3gp4_A Transcriptional regulat 49.8 1.4E+02 0.0047 26.4 11.2 111 261-399 5-115 (142)
11 1use_A VAsp, vasodilator-stimu 46.9 55 0.0019 23.6 5.8 35 297-333 3-40 (45)
12 2v4h_A NF-kappa-B essential mo 40.5 1.7E+02 0.006 25.0 9.3 71 18-89 34-107 (110)
13 1deq_A Fibrinogen (alpha chain 40.4 1.2E+02 0.0041 31.6 9.6 42 102-143 56-97 (390)
14 1nfn_A Apolipoprotein E3; lipi 38.6 2E+02 0.0068 26.8 10.4 68 57-132 91-158 (191)
15 3vkg_A Dynein heavy chain, cyt 38.3 8.3E+02 0.028 32.8 19.1 95 163-266 2011-2105(3245)
16 3vkg_A Dynein heavy chain, cyt 37.7 2.6E+02 0.0088 37.5 14.3 91 102-196 2010-2100(3245)
17 3ghg_A Fibrinogen alpha chain; 37.6 1.1E+02 0.0039 33.1 9.2 35 300-335 116-150 (562)
18 2xs1_A Programmed cell death 6 37.5 4.8E+02 0.016 29.2 29.5 108 79-193 469-580 (704)
19 3rrk_A V-type ATPase 116 kDa s 37.1 1.2E+02 0.0041 30.8 9.4 199 183-416 59-276 (357)
20 2lw9_A Unconventionnal myosin- 36.4 56 0.0019 23.8 4.6 38 301-338 6-43 (51)
21 3ra3_B P2F; coiled coil domain 36.0 43 0.0015 20.9 3.4 21 64-84 6-26 (28)
22 1go4_E MAD1 (mitotic arrest de 35.0 2E+02 0.0067 24.3 8.5 77 104-185 10-87 (100)
23 1deq_A Fibrinogen (alpha chain 32.1 1.5E+02 0.0052 30.8 8.8 53 233-285 115-170 (390)
24 2cci_F Cell division control p 31.0 25 0.00084 22.9 1.7 21 517-537 8-28 (30)
25 1quu_A Human skeletal muscle a 28.8 3.7E+02 0.013 25.3 16.5 135 103-258 91-242 (250)
26 2jo8_A Serine/threonine-protei 28.8 48 0.0016 24.6 3.3 26 367-392 23-49 (51)
27 2yy0_A C-MYC-binding protein; 28.5 1.1E+02 0.0038 22.6 5.4 30 115-144 21-50 (53)
28 4dci_A Uncharacterized protein 28.3 3.3E+02 0.011 24.5 9.7 69 66-141 37-105 (150)
29 3edv_A Spectrin beta chain, br 27.4 4.3E+02 0.015 25.6 16.5 212 18-255 82-322 (323)
30 1l8d_A DNA double-strand break 26.9 2.7E+02 0.0093 23.1 11.0 88 54-143 13-101 (112)
31 2yy0_A C-MYC-binding protein; 25.8 1.1E+02 0.0039 22.6 5.0 30 60-89 21-50 (53)
32 3oja_B Anopheles plasmodium-re 25.7 6.4E+02 0.022 26.9 16.2 125 166-327 456-580 (597)
33 2o70_A OHCU decarboxylase; URI 25.6 1.7E+02 0.0057 27.0 7.3 100 386-486 43-149 (174)
34 1yf2_A Type I restriction-modi 23.9 79 0.0027 32.1 5.3 41 271-325 377-417 (425)
35 2w6b_A RHO guanine nucleotide 23.4 1.4E+02 0.005 22.2 5.0 20 423-442 32-52 (56)
36 1m1j_C Fibrinogen gamma chain; 23.2 6.4E+02 0.022 26.4 12.1 21 68-88 44-64 (409)
37 3o7i_A OHCU decarboxylase; lya 23.2 1E+02 0.0036 28.9 5.4 49 438-486 119-170 (189)
38 2o8i_A AGR_C_4230P, hypothetic 22.2 1.4E+02 0.0047 27.3 6.0 60 427-486 82-145 (165)
39 4emc_C Monopolin complex subun 21.2 24 0.00082 26.8 0.4 26 489-516 26-51 (70)
40 1p9i_A Cortexillin I/GCN4 hybr 20.5 1.5E+02 0.0051 18.9 3.9 28 234-261 2-29 (31)
41 1ydx_A Type I restriction enzy 20.3 1E+02 0.0034 31.5 5.2 41 271-325 353-393 (406)
42 2dfs_A Myosin-5A; myosin-V, in 20.3 2.5E+02 0.0086 33.4 9.1 125 47-199 925-1049(1080)
No 1
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=100.00 E-value=5.8e-38 Score=283.58 Aligned_cols=126 Identities=30% Similarity=0.477 Sum_probs=113.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHhhHHHHHHHHcCCccccccccCchhhhHHHHHHHHhhhh-hhHHHHHHHHHHHHHHH
Q 007622 375 SRAKEEASSRKVIMEKVERWMLARDEERWLEEYSMDENRYSVSRGAHRNLRRAERARVTVKK-IPALVDSLFAMTKSWEE 453 (595)
Q Consensus 375 ~~lk~~~~~~k~Ile~vekw~~~~~Ee~wLE~~~~D~nR~~~~RG~h~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~ 453 (595)
++|+++|++|++||++|++|..+|.+...||+|++|||||+| ||| +|++|||+|++|+| ||+|++.|+++|.+||.
T Consensus 3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~~-Rgg--~LlreEK~Rk~i~k~lP~l~~~L~~~i~~wE~ 79 (130)
T 3nrx_A 3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFTN-RGG--NLLKEEKQRAKLQKMLPKLEEELKARIELWEQ 79 (130)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-cch--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 579999999999999999997777777779999999999998 999 99999999999999 99999999999999999
Q ss_pred HcCCeeEEcCccHHHHHHH-HHHHHHhHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 007622 454 ERKKVFLYDEVPLLAMLEE-YNMARQEREEEKQRQREKKKVQSQVVVEQENVFGS 507 (595)
Q Consensus 454 e~g~~Fl~dG~~ll~~l~e-~~~~r~eKE~ek~r~r~~kk~q~~~~~e~e~~~gs 507 (595)
++|.||+|||++|+++|++ |+.+|++||+||++ |++||. +.+|+||+|||
T Consensus 80 e~g~~Flv~G~~~le~l~eqw~~~r~~KE~eK~~-R~~kk~---~~~e~e~~~gs 130 (130)
T 3nrx_A 80 EHSKAFMVNGQKFMEYVAEQWEMHRLEKERAKQE-RQLKNK---KQTETEMLYGS 130 (130)
T ss_dssp HHTSCCEETTEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHCC
T ss_pred HcCCeeeEcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHhccCC
Confidence 9999999999999999988 99999999999999 555554 44799999998
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.98 E-value=6.5 Score=47.44 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 57 RRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQI 136 (595)
Q Consensus 57 ~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi 136 (595)
+..+...+.....+...+..++.++..+-..|. .....+..+...++.+..++.+-..++.++..++
T Consensus 870 ~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~-------------~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ-------------AETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555666665555553 2344555566666666666666556666666665
Q ss_pred HHHHHH
Q 007622 137 QKISAE 142 (595)
Q Consensus 137 ~~lc~e 142 (595)
..+-.+
T Consensus 937 ee~ee~ 942 (1184)
T 1i84_S 937 EEEEER 942 (1184)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.29 E-value=13 Score=44.71 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 57 RRKVDRANISRARLHQELAESEAEFTHLLL 86 (595)
Q Consensus 57 ~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~ 86 (595)
...+.+.+.....+.+.+..++.++.....
T Consensus 877 e~~l~ele~~l~~Le~e~~~l~~~L~~e~~ 906 (1184)
T 1i84_S 877 EAELKELEQKHTQLCEEKNLLQEKLQAETE 906 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.83 E-value=90 Score=30.46 Aligned_cols=109 Identities=12% Similarity=0.193 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 58 RKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQ 137 (595)
Q Consensus 58 ~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~ 137 (595)
..++.....+..+-..|++++.+++. +...+..+...++.+.......-.++.++...|.
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~--------------------l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~ 77 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEA--------------------KNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIA 77 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444443 4456677888888888888888888999999999
Q ss_pred HHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 138 KISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSAT 202 (595)
Q Consensus 138 ~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~ 202 (595)
+.-..+... =+.+.+..|...+..+..+.......+.++...|..+-..
T Consensus 78 ~~~~~l~~v----------------~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 78 SIQKKMSEI----------------KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHC----------------SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988877321 1557788888999999888888888888888888776444
No 5
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=55.00 E-value=21 Score=29.27 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 007622 67 RARLHQELAESEAEFTHLLLSLGERSL 93 (595)
Q Consensus 67 k~~L~q~Ia~~~~El~~L~~eLge~~~ 93 (595)
-+.|-..|+.+++++..|-..|+.|.+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~ 50 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASF 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 456778899999999999999998765
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.26 E-value=14 Score=39.97 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHH-HHHHHHHHHHH
Q 007622 102 GTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLE-EYQIELQGLHN 180 (595)
Q Consensus 102 ~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~-~l~~~L~~Lq~ 180 (595)
++|.++...+...|++|+.+.++-.+-..+.-.-...+.+.|-.... ...+.+-+.-++. +|+.+++.|+.
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~--------q~~dNdNtynE~S~ELRRrIqyLKe 124 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFS--------SANNRDNTYNRVSEDLRSRIEVLKR 124 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHH--------HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH--------hhhccchhHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999888877777777777777775532110 0001111222222 55566666665
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007622 181 EKNDRLQRVEKYIDAVRSL 199 (595)
Q Consensus 181 EK~~Rl~kv~~l~~~I~~L 199 (595)
+...-+..+..|.+.|.++
T Consensus 125 kVdnQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444333
No 7
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=53.47 E-value=1.1e+02 Score=26.40 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=57.2
Q ss_pred ccccchHHHHHHHHHHHHhHhCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 007622 14 ALLETSCGYLLQELQMIWDEVGEDQFEREKVLLDLE--QECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGER 91 (595)
Q Consensus 14 ~~~~~~c~~ll~eLq~IWdEIG~~e~eR~~~l~~le--qe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~ 91 (595)
+-........+..|+.-.+.++. ++.++..++. +...+-|+.+.+.+...|...-..|..++..+....-.-
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~---e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r--- 85 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTN---DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR--- 85 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHH---
Confidence 33455555566666665555543 4445555442 334455788888887777766655555555554332111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 92 SLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQ 137 (595)
Q Consensus 92 ~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~ 137 (595)
+-|--++..+...|.-|++-.++ ++.+++.||+
T Consensus 86 ----------~dLE~~iesL~eEl~FLKk~hee---El~eLq~qi~ 118 (119)
T 3ol1_A 86 ----------LDLERKVESLQEEIAFLKKLHEE---EIQELQAQIQ 118 (119)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSCC-
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhc
Confidence 12444566666666666665553 5555555543
No 8
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.55 E-value=73 Score=28.40 Aligned_cols=102 Identities=12% Similarity=0.067 Sum_probs=62.9
Q ss_pred cchHHHHHHHHHHHHhHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007622 17 ETSCGYLLQELQMIWDEVGED------QFEREKVLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGE 90 (595)
Q Consensus 17 ~~~c~~ll~eLq~IWdEIG~~------e~eR~~~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge 90 (595)
+.....+...|..-..+|.-. ..+|..+|..| ++....+ .+.+.++.++.++..+-.++-
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaAL-----NiadEl~--------k~~~~~~~L~~~l~~~~kE~~- 92 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYL-----NIADDYF--------KAKKMADSLSLDIENKDKEIY- 92 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHH-----HHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHH-----HHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-
Confidence 445556666667777777755 44565555543 2222211 122234444444444444442
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007622 91 RSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIA 144 (595)
Q Consensus 91 ~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~ 144 (595)
.|+..+....-.++.+.++..+..+++..++.++.++-+++.
T Consensus 93 ------------~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 93 ------------DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888888888888888888888888877663
No 9
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.57 E-value=54 Score=27.75 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchh
Q 007622 163 LSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSM 209 (595)
Q Consensus 163 lS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~ 209 (595)
+|.+.+..++..+..|+.|...-.+.+..+-..+-..+ |.-+|..
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd~~~ 53 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGDYDQ 53 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSCCCT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccCC
Confidence 48899999999999999999887777777777776653 5334443
No 10
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=49.78 E-value=1.4e+02 Score=26.42 Aligned_cols=111 Identities=10% Similarity=0.083 Sum_probs=57.7
Q ss_pred HHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q 007622 261 LTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELFLKKQKELEDICNNSH 340 (595)
Q Consensus 261 L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~eL~elw~~~~ 340 (595)
|.++-.+++++...-.-+... ..|.+......+--.||.+.|..+.. ++ .+..++
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~~-GLl~p~~r~~~g~R~Y~~~dl~~l~~-------I~-----------------~lr~~G 59 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYERI-GLIPPIHRNESGVRKFGAEDLRWILF-------TR-----------------QMRRAG 59 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH-TSSCCCCBCTTSCBCBCHHHHHHHHH-------HH-----------------HHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC-CCCCCCcCCCCCCeeeCHHHHHHHHH-------HH-----------------HHHHcC
Confidence 455666777777765444333 33433233334444577776655432 11 113345
Q ss_pred CCcchhhHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhh
Q 007622 341 MEIPSQSKMDKITSLLNSGEIDHADLLTSMDEQISRAKEEASSRKVIMEKVERWMLARD 399 (595)
Q Consensus 341 ~~~~~~~~~~~~~~~~~s~~~d~eelL~~~E~eI~~lk~~~~~~k~Ile~vekw~~~~~ 399 (595)
++.++ ...++.....|+.+.+++.+.++.++..+.+....-+.+++.++.....|+
T Consensus 60 ~sL~e---Ik~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 60 LSIEA---LIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp CCHHH---HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 222233333333335566666666677776666666666666666655554
No 11
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=46.92 E-value=55 Score=23.58 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH--hHH-HHHHHHHHHHH
Q 007622 297 SLTHNIIEQAEAEVKRLDQLKAS--KMQ-ELFLKKQKELE 333 (595)
Q Consensus 297 ~LS~~~I~~~e~Ev~RLe~lK~~--~mk-elI~k~r~eL~ 333 (595)
+.+...++.++.|+ |.+++++ +|| ++|...++||.
T Consensus 3 ~~~~~dle~~KqEI--L~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 3 SSDYSDLQRVKQEL--LEEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777787777 5555554 333 67777777765
No 12
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=40.47 E-value=1.7e+02 Score=24.98 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHHhHhCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007622 18 TSCGYLLQELQMIWDEVGEDQFEREK---VLLDLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLG 89 (595)
Q Consensus 18 ~~c~~ll~eLq~IWdEIG~~e~eR~~---~l~~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLg 89 (595)
+.|..+|..-+.-.+++......++. .+--|.+. .++|+.-..-+..-|.++...+..+..++..|-..+.
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQ-v~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQ-ADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45666788888888888876666554 33333443 5699999999999999999999999999998887654
No 13
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.37 E-value=1.2e+02 Score=31.57 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007622 102 GTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEI 143 (595)
Q Consensus 102 ~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL 143 (595)
++|.++...+...++.|+....+-.+-..+.-.-+..+.+.+
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~l 97 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELM 97 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 366777788888888888877776666666666666666644
No 14
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=38.63 E-value=2e+02 Score=26.85 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 57 RRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAV 132 (595)
Q Consensus 57 ~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l 132 (595)
.+...+....+.++.+.+.++++.+.-...+|.... ...+-+.-..+.|..++|+.+-.+++++|...
T Consensus 91 ~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l--------~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~ 158 (191)
T 1nfn_A 91 ARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAML--------GQSTEELRVRLASHLRKLRKRLLRDADDLQKR 158 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344556667788899999999999998888886532 12344566789999999999999999887654
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.33 E-value=8.3e+02 Score=32.79 Aligned_cols=95 Identities=6% Similarity=0.167 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHH
Q 007622 163 LSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVES 242 (595)
Q Consensus 163 lS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~ 242 (595)
|-.++|.+++..+...+.+...-.+++.++-..|..|-..+. ....+.. .+. .........|++-..++..
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~----~~~~ek~-~L~----~e~~~~~~kl~rA~~Li~g 2081 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA----TLIRETE-QIK----TESSKVKNKVDRSIALLDN 2081 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHH----HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHH----HHHHHHHHHHHHHHHHHHh
Confidence 455677777777776666665555555555555555544332 2111100 000 0112345678888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 243 LEEEKKKRLEKLHQLGKALTNLWN 266 (595)
Q Consensus 243 L~e~K~~R~~kl~~L~~~L~~LW~ 266 (595)
|..+|..-.+.+..+..++..|--
T Consensus 2082 L~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2082 LNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHhccH
Confidence 888888877777777776665543
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.74 E-value=2.6e+02 Score=37.45 Aligned_cols=91 Identities=23% Similarity=0.359 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHH
Q 007622 102 GTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNE 181 (595)
Q Consensus 102 ~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~E 181 (595)
.|+++.++.+...++..+.+..+-..++.++.++++.+-++...... .. ...-++-+....+|+.=...+..|-.|
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~---ek-~~L~~e~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR---ET-EQIKTESSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 69999999999999999888888888888888888887665532110 00 000111124567777777778888888
Q ss_pred HHHHHHHHHHHHHHH
Q 007622 182 KNDRLQRVEKYIDAV 196 (595)
Q Consensus 182 K~~Rl~kv~~l~~~I 196 (595)
+.+=.+.+.++...+
T Consensus 2086 k~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2086 RGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 765444444444333
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.61 E-value=1.1e+02 Score=33.11 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007622 300 HNIIEQAEAEVKRLDQLKASKMQELFLKKQKELEDI 335 (595)
Q Consensus 300 ~~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~eL~el 335 (595)
...|..++.+|+.-- ...+.|+..|.+.+.+|..|
T Consensus 116 RRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 356677777776655 34455666677777777655
No 18
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=37.45 E-value=4.8e+02 Score=29.19 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCCCCCC
Q 007622 79 AEFTHLLLSLGERSLPGRP-EKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISA---EIAGLSEYDDSST 154 (595)
Q Consensus 79 ~El~~L~~eLge~~~~~~~-~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~---eL~~~~~~~~~~~ 154 (595)
.+...+....|.. ....+ .....+|.+.+..|+..|++...--..=...|.....-|+-||. +|....+....
T Consensus 469 ~ed~~~R~k~g~~-w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~~~~~~l~~~~p~~~~-- 545 (704)
T 2xs1_A 469 ATDNDLRAKFKER-WQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANP-- 545 (704)
T ss_dssp HHHHHHHHHCTTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHTSCHHHHHHTSCCCCC--
T ss_pred HHHHHHHHHhccc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHhhCccCCC--
Confidence 3444566667753 11100 11123466667777777777766555555566666666655542 12111111100
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 155 NVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYI 193 (595)
Q Consensus 155 ~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~ 193 (595)
+... .....+..|+..+..+..-+.+|...+.++.
T Consensus 546 -~~~~---~~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk 580 (704)
T 2xs1_A 546 -AKTM---QGSEVVNVLKSLLSNLDEVKKEREGLENDLK 580 (704)
T ss_dssp -CGGG---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1010 1224677888888888888888876655553
No 19
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.10 E-value=1.2e+02 Score=30.80 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 007622 183 NDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEEEKKKRLEKLHQLGKA-- 260 (595)
Q Consensus 183 ~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~-- 260 (595)
..-...+.++...+..+.+.|+............++.+. ...++.+...+..+...+.+-..++..+...
T Consensus 59 ~~~~~~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~~~--------e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~ 130 (357)
T 3rrk_A 59 EAELKRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEA--------EAVLRPVASRAEVLGKERAALEEEIQTIELFGK 130 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCSSCCCSCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHhcccccccccCCcchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred -HHHHHHHc-CCChhHHhhHHHHhhhcccCccccCCCCCC-cHHHHHHHHHHHHHHHHH-----------HHHhHHHHHH
Q 007622 261 -LTNLWNLM-GTPYNDRRKFSHVTSLLSVSSAEVSEPGSL-THNIIEQAEAEVKRLDQL-----------KASKMQELFL 326 (595)
Q Consensus 261 -L~~LW~~L-~~p~eer~~F~~~~~~i~~s~~e~~~~~~L-S~~~I~~~e~Ev~RLe~l-----------K~~~mkelI~ 326 (595)
+..|.... +++ ...|..+. +|.+ +.+.++.++..|.+...- +.-.+=-.-.
T Consensus 131 ~l~~L~p~~~~ld---~~~~~g~~------------~g~ip~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vv~~~~ 195 (357)
T 3rrk_A 131 AAEKLAALAHGLD---ESPRLGVI------------PFLVAKPEELEAVRKALQEALADRFVLEAEPLENQLAALVVVKR 195 (357)
T ss_dssp HHHHHHHHTTTTT---TCTTEEEE------------EEEESCHHHHHHHHHHHHHHHTTSCEEEEEECSSSEEEEEEEEG
T ss_pred HHHHHhhhhccCC---ccceeeee------------eEEecChhhHHHHHHHHHHhcCCeEEEEeecCCCcEEEEEEEEH
Q ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHhhhccCCCC--ChHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHhhHHHH
Q 007622 327 KKQKELEDICNNSHMEIPSQSKMDKITSLLNSGEI--DHADLLTSMDEQISRAKEEASSRKVIMEKVERW-MLARDEERW 403 (595)
Q Consensus 327 k~r~eL~elw~~~~~~~~~~~~~~~~~~~~~s~~~--d~eelL~~~E~eI~~lk~~~~~~k~Ile~vekw-~~~~~Ee~w 403 (595)
....++..+++.+++. .-.+..+.- .+.+.+..++.+|..++.....-+.=+..+.++ ..... .|
T Consensus 196 ~~~~~v~~il~s~~f~----------~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~--~~ 263 (357)
T 3rrk_A 196 SELEAARSSLSRLGLA----------ELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALI--AL 263 (357)
T ss_dssp GGHHHHHHHHHTTTCC----------BCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHCCCe----------eccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q ss_pred HHHHcCCcccccc
Q 007622 404 LEEYSMDENRYSV 416 (595)
Q Consensus 404 LE~~~~D~nR~~~ 416 (595)
.+...+.-.+|.+
T Consensus 264 ~~~l~~~~~~~~~ 276 (357)
T 3rrk_A 264 WTRAKDEVARYKA 276 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 20
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=36.39 E-value=56 Score=23.84 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 007622 301 NIIEQAEAEVKRLDQLKASKMQELFLKKQKELEDICNN 338 (595)
Q Consensus 301 ~~I~~~e~Ev~RLe~lK~~~mkelI~k~r~eL~elw~~ 338 (595)
+-|-.++.|+++|+..|...+..|-...+.+|...-|.
T Consensus 6 EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD~ 43 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQ 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 56778999999999999999999998888888876553
No 21
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=36.02 E-value=43 Score=20.88 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007622 64 NISRARLHQELAESEAEFTHL 84 (595)
Q Consensus 64 ~~~k~~L~q~Ia~~~~El~~L 84 (595)
...-++|.|+|+.++-|++.|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 344678999999999988876
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.01 E-value=2e+02 Score=24.28 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccc-cCCCCCHHHHHHHHHHHHHHHHHH
Q 007622 104 LKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISAEIAGLSEYDDSSTNVIV-NENDLSLKKLEEYQIELQGLHNEK 182 (595)
Q Consensus 104 L~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~v-d~~dlS~~~L~~l~~~L~~Lq~EK 182 (595)
-.+.+..++..++.|+.+...-.++...+..++...| +-| +|+.... .++ -...|...-....+..+..|+.|.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~G--d~~~~~T-KVlH~~~NPa~~a~~~~~~~~e~Lq~E~ 84 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQG--DYDQSRT-KVLHMSLNPTSVARQRLREDHSQLQAEC 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCS--CCCTTTE-EEEEESSCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc--ccCCccC-eeeeecCChHHHHHHHHHHHHHHHHHHH
Confidence 5589999999999999999888888888888887654 323 2322111 112 123455566667778888888776
Q ss_pred HHH
Q 007622 183 NDR 185 (595)
Q Consensus 183 ~~R 185 (595)
..-
T Consensus 85 erL 87 (100)
T 1go4_E 85 ERL 87 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.05 E-value=1.5e+02 Score=30.79 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCChhHHhhHHHHhhhc
Q 007622 233 LAKLNSTVESLEEEKKKRLEKLHQLGKALTNLWN---LMGTPYNDRRKFSHVTSLL 285 (595)
Q Consensus 233 L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~LW~---~L~~p~eer~~F~~~~~~i 285 (595)
.+.|+..+.-|+..-...+..|..|+..|..+-. +|++..+.+..=..+.|.|
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~ 170 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSR 170 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 3444444444444433333333333333333322 4555555544444444443
No 24
>2cci_F Cell division control protein 6 homolog; complex (transferase/cell division), protein kinases, cell C recruitment, substrate recognition; HET: TPO ATP; 2.7A {Homo sapiens}
Probab=30.98 E-value=25 Score=22.90 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCCCCcccc
Q 007622 517 PNRSLNGSFSNANPLNRRISM 537 (595)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~ 537 (595)
.+++-||.....|+..||++.
T Consensus 8 q~kkengpp~~~t~kgrrLvF 28 (30)
T 2cci_F 8 QGKKENGPPHSHTLKGRRLVF 28 (30)
T ss_pred cccccCCCCcccccccceeec
Confidence 457777766678888999875
No 25
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=28.84 E-value=3.7e+02 Score=25.29 Aligned_cols=135 Identities=10% Similarity=0.135 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----------HHHhcCCCCCCCCCCcccccCCCCCHHHH
Q 007622 103 TLKEQLDSITPALREMRLRKEERVNQFRAVQAQI---QKI-----------SAEIAGLSEYDDSSTNVIVNENDLSLKKL 168 (595)
Q Consensus 103 tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi---~~l-----------c~eL~~~~~~~~~~~~~~vd~~dlS~~~L 168 (595)
.+..+...|....+.|...-..|...+.+..... ..+ ..-|..........+ . .-+.+.+
T Consensus 91 ~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~---~---~~d~e~v 164 (250)
T 1quu_A 91 NVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMF---I---VHSIEEI 164 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC---C---CCSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc---c---cCCHHHH
Confidence 5777888888888888888777777776654433 111 111111100000000 0 1233345
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHH
Q 007622 169 EEYQIELQGLH---NEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEE 245 (595)
Q Consensus 169 ~~l~~~L~~Lq---~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e 245 (595)
..+......+. .+...+...+..+...+..|....+.+.. ++ .+.+..+++.|...-..|..
T Consensus 165 ~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~~~l~~~~~~~~~---------~~------~~~~~~~~~~l~~~W~~L~~ 229 (250)
T 1quu_A 165 QSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRIS---------SS------NPYSTVTMDELRTKWDKVKQ 229 (250)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSC---------CS------CTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---------CC------CCcccCcHHHHHHHHHHHHH
Confidence 55555555555 45555566666666666666554442100 00 01122346667777777777
Q ss_pred HHHHHHHHHHHHH
Q 007622 246 EKKKRLEKLHQLG 258 (595)
Q Consensus 246 ~K~~R~~kl~~L~ 258 (595)
.-..|..++++..
T Consensus 230 ~~~~R~~~L~~~l 242 (250)
T 1quu_A 230 LVPIRDQSLQEEL 242 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665543
No 26
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=28.79 E-value=48 Score=24.56 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHH-hhchHHHHHHH
Q 007622 367 LTSMDEQISRAKEEA-SSRKVIMEKVE 392 (595)
Q Consensus 367 L~~~E~eI~~lk~~~-~~~k~Ile~ve 392 (595)
=..||.||..+...| ..|+||++.|+
T Consensus 23 d~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 23 DPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 347899999997655 67899999886
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.54 E-value=1.1e+02 Score=22.62 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007622 115 LREMRLRKEERVNQFRAVQAQIQKISAEIA 144 (595)
Q Consensus 115 LE~Lrk~K~eR~~ef~~l~~qi~~lc~eL~ 144 (595)
++.|+.+..+-..++..+..+++.+|+.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445555556667777777777664
No 28
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=28.29 E-value=3.3e+02 Score=24.53 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 66 SRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQAQIQKISA 141 (595)
Q Consensus 66 ~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~~qi~~lc~ 141 (595)
...++-.+++.++-+...+..++.-....+ .+....++++.++.+++.=+ .+|......+..+++.+-.
T Consensus 37 ~i~q~d~elqQLefq~kr~~~e~~~q~~~~----~~p~~~~qi~~iq~q~~~ek---~~r~e~k~~l~~ql~qv~~ 105 (150)
T 4dci_A 37 GIANADQQLAQLEQEGQTVVDQVRRQSANP----LDPRVQEQVANIQQQVAGKR---SELEEQKRNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCT----TCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CChhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 356666677777777777777776322111 01134456677777766554 5555555555566665554
No 29
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=27.42 E-value=4.3e+02 Score=25.60 Aligned_cols=212 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhHhCCCHHHHHHHHH------HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Q 007622 18 TSCGYLLQELQMIWDEVGEDQFEREKVLL------DLEQECLDVYR-----------------RKVDRANISRARLHQEL 74 (595)
Q Consensus 18 ~~c~~ll~eLq~IWdEIG~~e~eR~~~l~------~leqe~l~vy~-----------------~kV~e~~~~k~~L~q~I 74 (595)
......+..|..-|+.+..--.+|...|. +..+.|-++.. ..|......-..+..+|
T Consensus 82 ~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~f~~~~~e~~~Wl~~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~l 161 (323)
T 3edv_A 82 ATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDI 161 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCCC
Q 007622 75 AESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAVQ------AQIQKISAEIAGLSE 148 (595)
Q Consensus 75 a~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l~------~qi~~lc~eL~~~~~ 148 (595)
+..+..+..|... |..-....+......+..++..+....+.|...-..|...+.+.. .....+..-|.....
T Consensus 162 ~~~~~~v~~l~~~-a~~L~~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~~~~~F~~~~~~l~~Wl~~~~~ 240 (323)
T 3edv_A 162 QALGTQVRQLQED-AARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIR 240 (323)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCC
Q 007622 149 YDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNI 228 (595)
Q Consensus 149 ~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~l 228 (595)
.......+ -+...++.+-...+.++.+...+...|..+...-..|...-..+....-..
T Consensus 241 ~l~~~~~~------~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~--------------- 299 (323)
T 3edv_A 241 QIEAQEKP------RDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEK--------------- 299 (323)
T ss_dssp HHHTCCCC------CSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHH---------------
T ss_pred HHhCCcCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH---------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 229 SDNILAKLNSTVESLEEEKKKRLEKLH 255 (595)
Q Consensus 229 S~~~L~~L~~~~~~L~e~K~~R~~kl~ 255 (595)
|..|...-..|...=..|...++
T Consensus 300 ----l~~L~~~w~~l~~~w~~R~~~L~ 322 (323)
T 3edv_A 300 ----LLQLTEKRKEMIDKWEDRWEWLR 322 (323)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhc
No 30
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.87 E-value=2.7e+02 Score=23.05 Aligned_cols=88 Identities=11% Similarity=0.153 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 54 DVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGE-RSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERVNQFRAV 132 (595)
Q Consensus 54 ~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge-~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~~ef~~l 132 (595)
+-|+..+.+....+..+...|..+...+..+-.. |. .|+-+.+-.. .........+...+..++.....-..++..+
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvCgs~l~~-~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l 90 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPVCGRELTD-EHREELLSKYHLDLNNSKNTLAKLIDRKSEL 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTTCCEECH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666777777776666666554221 22 2221221110 0112334555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q 007622 133 QAQIQKISAEI 143 (595)
Q Consensus 133 ~~qi~~lc~eL 143 (595)
..++..+-.++
T Consensus 91 ~~~~~~l~~~~ 101 (112)
T 1l8d_A 91 ERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.83 E-value=1.1e+02 Score=22.56 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007622 60 VDRANISRARLHQELAESEAEFTHLLLSLG 89 (595)
Q Consensus 60 V~e~~~~k~~L~q~Ia~~~~El~~L~~eLg 89 (595)
|+....+.+.|.+.++.+.++++.||+.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455567788888888888888888876
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.65 E-value=6.4e+02 Score=26.93 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhccCccccccccCCCCCHHHHHHHHHHHHHHHH
Q 007622 166 KKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSLSATLGMESSMIITKVHPSLSELFGISKNISDNILAKLNSTVESLEE 245 (595)
Q Consensus 166 ~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~~~evh~sl~~~~~~~~~lS~~~L~~L~~~~~~L~e 245 (595)
+.+..++..+..|+.+...-...+..+...|......+.......... .+.+...+..+++
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~-------------------~~~l~~~~~~~~~ 516 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS-------------------SDNLNKVFTHLKE 516 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCH-------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCH-------------------HHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007622 246 EKKKRLEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELF 325 (595)
Q Consensus 246 ~K~~R~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI 325 (595)
..+....+++.....+...=..++-=..++....... +.......|+.+=.+...+.++++.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~------------------~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQL------------------DNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHH------------------hhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 007622 326 LK 327 (595)
Q Consensus 326 ~k 327 (595)
.+
T Consensus 579 ~~ 580 (597)
T 3oja_B 579 AK 580 (597)
T ss_dssp HT
T ss_pred HH
No 33
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=25.58 E-value=1.7e+02 Score=26.99 Aligned_cols=100 Identities=8% Similarity=0.093 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHcCCccc---cccccCchhhhHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHcCCeeEE
Q 007622 386 VIMEKVERWMLARDEERWLEEYSMDENR---YSVSRGAHRNLRRAERARVTVKKI-PALVDSLFAMTKSWEEERKKVFLY 461 (595)
Q Consensus 386 ~Ile~vekw~~~~~Ee~wLE~~~~D~nR---~~~~RG~h~~LlreEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~ 461 (595)
.++..+......+.++.|++--.--|.= ... .|.-......|.+..-++.+ |..-+.|...=.+|++.+|-||.+
T Consensus 43 ~L~~a~~~~~~~~~~~~~~~~l~aHP~lg~~~~~-~~~lt~~S~~EQa~agl~~~~~~~~~~l~~lN~~Y~~kFGfpFvi 121 (174)
T 2o70_A 43 DIEARISEFIHSLPDSGKEGILRCHPDLAGRDLQ-SGTLTPESQEEQSQAGMTTLDSAEIVHMYRLNSEYKERFGFPFVI 121 (174)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTSCCTTSHHHH-HTCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHhCCcccccccc-ccccchhhHHHHHhhccccCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3333333333334455666665555531 110 11111344555555446664 777789999999999999999997
Q ss_pred --cCccHHHHHHH-HHHHHHhHHHHHHH
Q 007622 462 --DEVPLLAMLEE-YNMARQEREEEKQR 486 (595)
Q Consensus 462 --dG~~ll~~l~e-~~~~r~eKE~ek~r 486 (595)
+|..=-++|+. ...+....+.|.+.
T Consensus 122 ~v~g~s~~~IL~~l~~Rl~n~~~~E~~~ 149 (174)
T 2o70_A 122 CARLNNKADIVRQLSERLKNRRTAELEC 149 (174)
T ss_dssp CGGGCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 89888888888 66666777777643
No 34
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=23.95 E-value=79 Score=32.09 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=34.5
Q ss_pred ChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007622 271 PYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELF 325 (595)
Q Consensus 271 p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI 325 (595)
|.+||+.|..+...+ +..|+.++.+++.|+++|...|.+++
T Consensus 377 pl~eQ~~I~~~l~~l--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 417 (425)
T 1yf2_A 377 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 417 (425)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 458899998887543 56889999999999999999999876
No 35
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.41 E-value=1.4e+02 Score=22.23 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=17.2
Q ss_pred hhHHHHHHHHhhhh-hhHHHH
Q 007622 423 NLRRAERARVTVKK-IPALVD 442 (595)
Q Consensus 423 ~LlreEK~Rk~i~K-lPkl~~ 442 (595)
.|-.|.|+|+++.+ +|++..
T Consensus 32 ~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 32 SLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999 798855
No 36
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.19 E-value=6.4e+02 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007622 68 ARLHQELAESEAEFTHLLLSL 88 (595)
Q Consensus 68 ~~L~q~Ia~~~~El~~L~~eL 88 (595)
..++++|+.+..++..|...|
T Consensus 44 E~~l~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 44 EGLLQQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444
No 37
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=23.17 E-value=1e+02 Score=28.90 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeeEE--cCccHHHHHHH-HHHHHHhHHHHHHH
Q 007622 438 PALVDSLFAMTKSWEEERKKVFLY--DEVPLLAMLEE-YNMARQEREEEKQR 486 (595)
Q Consensus 438 Pkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~r 486 (595)
|..-+.|...=.+|+..+|-||.+ +|..--++|+. ...+....+.|.+.
T Consensus 119 ~~e~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~~IL~~l~~Rl~nd~e~E~~~ 170 (189)
T 3o7i_A 119 ERLAQALREGNARYEARFGRVFLIRAKGRSGEEILQALTRRLQHTADEEVAE 170 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCCCTTCCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 667788999999999999999998 88998999988 77777777777643
No 38
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=22.24 E-value=1.4e+02 Score=27.32 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=43.1
Q ss_pred HHHHHHhhhhh-hHHHHHHHHHHHHHHHHcCCeeEE--cCccHHHHHHH-HHHHHHhHHHHHHH
Q 007622 427 AERARVTVKKI-PALVDSLFAMTKSWEEERKKVFLY--DEVPLLAMLEE-YNMARQEREEEKQR 486 (595)
Q Consensus 427 eEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~r 486 (595)
.|.+..-+..+ |..-+.|...=.+|+..+|-||.+ +|..=-++|+. ...+....+.|...
T Consensus 82 ~EQa~agl~~~~~~~~~~l~~lN~~Ye~kFGfpFvi~v~g~~~~~Il~~l~~Rl~nd~~~E~~~ 145 (165)
T 2o8i_A 82 NEQAGAGLDRLSPQEHARFTQLNSAYTEKFGFPFIIAVKGLNRHDILSAFDTRIDNNAAQEFAT 145 (165)
T ss_dssp ------CTTSCCHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHhhccccCCHHHHHHHHHHHHHHHHHcCCeeEeeeCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 34333334553 666688999999999999999996 89998899988 77777777777643
No 39
>4emc_C Monopolin complex subunit MAM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae}
Probab=21.17 E-value=24 Score=26.79 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=13.1
Q ss_pred HHHhhhhhhhhhhhcccCCCCCCCCCCC
Q 007622 489 EKKKVQSQVVVEQENVFGSRPGSSNRRI 516 (595)
Q Consensus 489 ~~kk~q~~~~~e~e~~~gs~p~~~~~~~ 516 (595)
+.+|.-.-|.+-.|+.|||.|.| |+|
T Consensus 26 da~kilndlsatsenpf~ssp~t--kk~ 51 (70)
T 4emc_C 26 DARKVLNDLSATSENPFSSSPNT--KKI 51 (70)
T ss_dssp CHHHHHHHHHCCCCSTTC----------
T ss_pred cHHHHHhhhcccccCCCCCCCCc--cCc
Confidence 34555555778889999999998 554
No 40
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=20.49 E-value=1.5e+02 Score=18.86 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 234 AKLNSTVESLEEEKKKRLEKLHQLGKAL 261 (595)
Q Consensus 234 ~~L~~~~~~L~e~K~~R~~kl~~L~~~L 261 (595)
+.|...+..|+.+-.+-..+++++..++
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777788877777777777665543
No 41
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=20.31 E-value=1e+02 Score=31.52 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=34.2
Q ss_pred ChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007622 271 PYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELF 325 (595)
Q Consensus 271 p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI 325 (595)
|.+||+.|...... -+..|+.++.+++.|+++|...|.+++
T Consensus 353 pl~eQ~~I~~~l~~--------------id~~i~~~~~~i~~L~~lk~~LL~~lf 393 (406)
T 1ydx_A 353 SFQLQRKAGKIVFL--------------LDQKLDQYKKELSSLTVIRDTLLKKLF 393 (406)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999888753 357889999999999999999998876
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.27 E-value=2.5e+02 Score=33.38 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 47 DLEQECLDVYRRKVDRANISRARLHQELAESEAEFTHLLLSLGERSLPGRPEKMTGTLKEQLDSITPALREMRLRKEERV 126 (595)
Q Consensus 47 ~leqe~l~vy~~kV~e~~~~k~~L~q~Ia~~~~El~~L~~eLge~~~~~~~~~~~~tL~eql~~l~~~LE~Lrk~K~eR~ 126 (595)
+||..+.++ +..++++++....|...+...+..+..-++.|.... +.++.....++.+..+...-.
T Consensus 925 ~LE~kl~eL-q~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l-------------~~le~~~~e~~~~~~~v~~L~ 990 (1080)
T 2dfs_A 925 GLENKIMQL-QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV-------------ERLRMSEEEAKNATNRVLSLQ 990 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 127 NQFRAVQAQIQKISAEIAGLSEYDDSSTNVIVNENDLSLKKLEEYQIELQGLHNEKNDRLQRVEKYIDAVRSL 199 (595)
Q Consensus 127 ~ef~~l~~qi~~lc~eL~~~~~~~~~~~~~~vd~~dlS~~~L~~l~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L 199 (595)
+++.++..+++++..+...... --..-.++++..+..|++|+..-.+++.++...|...
T Consensus 991 ~e~~~l~~~~~~~~ke~~~lee--------------~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 991 EEIAKLRKELHQTQTEKKTIEE--------------WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!