Query 007622
Match_columns 595
No_of_seqs 252 out of 505
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 06:23:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q37a1 a.288.1.1 (A:6-160) OH 46.1 31 0.0022 29.3 8.0 94 389-485 32-135 (155)
2 d1yf2a2 d.287.1.2 (A:221-425) 40.5 16 0.0011 30.8 5.3 41 271-325 157-197 (205)
3 d1ydxa2 d.287.1.2 (A:194-374) 34.3 21 0.0016 29.7 5.1 40 272-325 138-177 (181)
4 d1ydxa1 d.287.1.2 (A:1-193) Bi 33.1 24 0.0017 29.7 5.2 41 272-326 143-183 (193)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 32.8 1.1E+02 0.0081 24.2 10.3 37 228-264 92-128 (133)
6 d2o8ia1 a.288.1.1 (A:1-165) Hy 30.2 65 0.0048 27.2 7.6 62 424-485 79-144 (165)
7 d2o70a1 a.288.1.1 (A:2-166) OH 29.1 63 0.0046 27.3 7.3 98 387-485 43-147 (165)
8 d1gm5a1 a.24.21.1 (A:7-105) Re 28.9 12 0.0009 29.3 2.1 49 378-447 44-92 (99)
9 d1yf2a1 d.287.1.2 (A:1-220) Bi 26.9 46 0.0033 28.4 6.1 42 271-326 167-208 (220)
10 d1zkea1 a.30.6.1 (A:1-79) Hypo 22.9 1E+02 0.0073 22.6 6.1 58 251-317 9-66 (79)
No 1
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=46.15 E-value=31 Score=29.30 Aligned_cols=94 Identities=12% Similarity=0.170 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhHHHHHHHHcCCcccccccc------CchhhhHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHcCCeeEE
Q 007622 389 EKVERWMLARDEERWLEEYSMDENRYSVSR------GAHRNLRRAERARVTVKK-IPALVDSLFAMTKSWEEERKKVFLY 461 (595)
Q Consensus 389 e~vekw~~~~~Ee~wLE~~~~D~nR~~~~R------G~h~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g~~Fl~ 461 (595)
..+..+...+.++.|++--.--|.= - +| |..-.....|... -+.. -|...+.|...=.+|++.+|-||+|
T Consensus 32 ~a~~~~~~~~~~~~~l~~l~aHP~L-g-~~~~~~~~~~lt~~S~~EQs~-al~~~~~~~~~~l~~lN~~Y~~kFGfpFIi 108 (155)
T d2q37a1 32 TARDIWFNQVNVTDWLEAFSAHPQI-G-NTPSPSINSDFARRSVSEQST-AFATTSASALQELAEWNVLYKKKFGFIFII 108 (155)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSCCT-T-SCCC-------------TTHH-HHTSCCHHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHhcCccc-c-ccccccccchhhHHhHHHHHh-hhccCCHHHHHHHHHHHHHHHHHcCCeeEE
Confidence 3334444445677788877776652 1 12 1111223334333 3777 5889999999999999999999987
Q ss_pred --cCccHHHHHHH-HHHHHHhHHHHHH
Q 007622 462 --DEVPLLAMLEE-YNMARQEREEEKQ 485 (595)
Q Consensus 462 --dG~~ll~~l~e-~~~~r~eKE~ek~ 485 (595)
.|..--+||.. ...+....+.|..
T Consensus 109 ~v~g~s~~eIL~~l~~Rl~n~~~~E~~ 135 (155)
T d2q37a1 109 CASGRTHAEMLHALKERYENRPIVELE 135 (155)
T ss_dssp CCSSCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHCCCHHHHHH
Confidence 89999999988 6666667777763
No 2
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=40.51 E-value=16 Score=30.78 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=33.8
Q ss_pred ChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007622 271 PYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELF 325 (595)
Q Consensus 271 p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI 325 (595)
|.+||+.|......+ +..|+.++..++.|+++|...|..++
T Consensus 157 ~~~eQ~~I~~~l~~i--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 197 (205)
T d1yf2a2 157 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 197 (205)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888877542 57889999999999999999998876
No 3
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=34.34 E-value=21 Score=29.70 Aligned_cols=40 Identities=23% Similarity=0.442 Sum_probs=34.1
Q ss_pred hhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007622 272 YNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELF 325 (595)
Q Consensus 272 ~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI 325 (595)
.++|+.|.+....+ ++.|+.++.+++.|+++|...|++++
T Consensus 138 l~eQ~~I~~~l~~~--------------d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 138 FQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899998887543 57899999999999999999988875
No 4
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=33.11 E-value=24 Score=29.65 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=34.7
Q ss_pred hhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007622 272 YNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELFL 326 (595)
Q Consensus 272 ~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI~ 326 (595)
.+||+.+..+...+ +..|+.++.+++.|+++|...|++++.
T Consensus 143 ~~eQ~~I~~~l~~l--------------d~~i~~~~~~i~~l~~~~~~ll~~lft 183 (193)
T d1ydxa1 143 KNEQHAIANTLSVF--------------DERLENLASLIEINRKLRDEYAHKLFS 183 (193)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57788888876433 578999999999999999999999984
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.76 E-value=1.1e+02 Score=24.22 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007622 228 ISDNILAKLNSTVESLEEEKKKRLEKLHQLGKALTNL 264 (595)
Q Consensus 228 lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~L~~L 264 (595)
+-+..++.|...++.|.........++..+...+.++
T Consensus 92 ~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555443
No 6
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=30.15 E-value=65 Score=27.21 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=44.8
Q ss_pred hHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHcCCeeEE--cCccHHHHHHH-HHHHHHhHHHHHH
Q 007622 424 LRRAERARVTVKKI-PALVDSLFAMTKSWEEERKKVFLY--DEVPLLAMLEE-YNMARQEREEEKQ 485 (595)
Q Consensus 424 LlreEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~l~e-~~~~r~eKE~ek~ 485 (595)
....|....-+..+ |..-+.|...=.+|++.+|-||.| .|..--++|.. +..+....+.|..
T Consensus 79 ~S~~Eq~~agl~~~~~~e~~~l~~lN~~Y~~kFGfpFIi~v~g~~~~~Il~~l~~Rl~n~~~~E~~ 144 (165)
T d2o8ia1 79 DSRNEQAGAGLDRLSPQEHARFTQLNSAYTEKFGFPFIIAVKGLNRHDILSAFDTRIDNNAAQEFA 144 (165)
T ss_dssp ---------CTTSCCHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCHHHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhhhhccccccCHHHHHHHHHHHHHHHHHcCCeeEEeeCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555666664 778888999999999999999997 89999999998 7777777777763
No 7
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=29.12 E-value=63 Score=27.32 Aligned_cols=98 Identities=8% Similarity=0.112 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHcCCccc---cccccCchhhhHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHcCCeeEE-
Q 007622 387 IMEKVERWMLARDEERWLEEYSMDENR---YSVSRGAHRNLRRAERARVTVKKI-PALVDSLFAMTKSWEEERKKVFLY- 461 (595)
Q Consensus 387 Ile~vekw~~~~~Ee~wLE~~~~D~nR---~~~~RG~h~~LlreEK~Rk~i~Kl-Pkl~~~L~~~l~~wE~e~g~~Fl~- 461 (595)
+...+..-...+.++.|++--.--|.= ... .|..-.-...|....-+..+ +...+.|...=.+|++.+|-||.+
T Consensus 43 L~~a~~~~~~~~~~~~~~~~l~~HP~Lg~~~~~-~~~lt~~s~~eq~~agl~~~~~~e~~~l~~lN~~Y~~kFGfpFIi~ 121 (165)
T d2o70a1 43 IEARISEFIHSLPDSGKEGILRCHPDLAGRDLQ-SGTLTPESQEEQSQAGMTTLDSAEIVHMYRLNSEYKERFGFPFVIC 121 (165)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTSCCTTSHHHH-HTCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred HHHHHHHHHHHcCcchhHHHHHhCchhhhchhh-hhhhhhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHcCCeeEEe
Confidence 344333333444566676666555532 110 11111233456666667774 788899999999999999999997
Q ss_pred -cCccHHHHHHH-HHHHHHhHHHHHH
Q 007622 462 -DEVPLLAMLEE-YNMARQEREEEKQ 485 (595)
Q Consensus 462 -dG~~ll~~l~e-~~~~r~eKE~ek~ 485 (595)
.|..--++|.. ...+....+.|..
T Consensus 122 v~g~s~~~Il~~l~~Rl~n~~~~E~~ 147 (165)
T d2o70a1 122 ARLNNKADIVRQLSERLKNRRTAELE 147 (165)
T ss_dssp GGGCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999988 6777777777663
No 8
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=28.90 E-value=12 Score=29.29 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=34.0
Q ss_pred HHHHhhchHHHHHHHHHHHHhhHHHHHHHHcCCccccccccCchhhhHHHHHHHHhhhhhhHHHHHHHHH
Q 007622 378 KEEASSRKVIMEKVERWMLARDEERWLEEYSMDENRYSVSRGAHRNLRRAERARVTVKKIPALVDSLFAM 447 (595)
Q Consensus 378 k~~~~~~k~Ile~vekw~~~~~Ee~wLE~~~~D~nR~~~~RG~h~~LlreEK~Rk~i~KlPkl~~~L~~~ 447 (595)
.+....+.+|++++.++-+-+. -=+ =+.+|++++||++.|.|++.++..
T Consensus 44 dDpLlen~el~~kLqeF~~Yi~------------------~~~---~Lp~eR~~kRvk~~~gMIerfR~~ 92 (99)
T d1gm5a1 44 DDPLLENKDLEEKLQAFLDYVK------------------EIP---NLPEARKRYRIQKSLEMIEKLRSW 92 (99)
T ss_dssp CCGGGGCHHHHHHHHHHHHHHT------------------TSS---SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhhcCHHHHHHHHHHHHHHH------------------Hhc---cCCHHHHHHHHhccHHHHHHHHHH
Confidence 3566667777777777633221 111 257899999999999999988754
No 9
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=26.89 E-value=46 Score=28.43 Aligned_cols=42 Identities=19% Similarity=0.468 Sum_probs=35.0
Q ss_pred ChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007622 271 PYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLKASKMQELFL 326 (595)
Q Consensus 271 p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mkelI~ 326 (595)
|.++|+.|......| .+.|+..+.+++.|+++|...|.+++.
T Consensus 167 p~~eQ~~I~~~l~~i--------------~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 167 PLEEQKQIAKILTKI--------------DEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 568888888877543 578899999999999999999999885
No 10
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=22.89 E-value=1e+02 Score=22.58 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHhhHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHH
Q 007622 251 LEKLHQLGKALTNLWNLMGTPYNDRRKFSHVTSLLSVSSAEVSEPGSLTHNIIEQAEAEVKRLDQLK 317 (595)
Q Consensus 251 ~~kl~~L~~~L~~LW~~L~~p~eer~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK 317 (595)
++.+++.+.+|.-|-+.-.++.. .|...-+| |- .-|..|+...+.++..||.+|.+.-
T Consensus 9 l~~IE~~q~eI~~lL~~AkiS~v---DyImIKRG---S~---DmPe~l~~~~l~qid~ev~kLK~~I 66 (79)
T d1zkea1 9 LADIEDSQNEIEMLLKLANLSLG---DFIEIKRG---SM---DMPKGVNEAFFTQLSEEVERLKELI 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHH---HHHHHHTT---SS---CCCTTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh---HhheeecC---cc---cCccccCHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999875 34444443 11 3466789999999999999987653
Done!