BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007626
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 26/155 (16%)
Query: 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV 403
K G + +A +Y+E G++ S +NVL L L +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVL--------------------LYVCSLAEAA 77
Query: 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQL 463
T SS N L++G + +M + PN TFT ++ A +KQ+
Sbjct: 78 TESS------PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQM 131
Query: 464 KWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEM 498
K + P+ Y P + GFC+ G+ D+A + A M
Sbjct: 132 KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 201 CIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEA---------VYMFKE 251
C + G A L + R V +S + YN LL A E+ +FK+
Sbjct: 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ 95
Query: 252 YFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE 311
P+ TF + + + AF+ M +FG P + +Y + G CR +
Sbjct: 96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155
Query: 312 VARGHEL 318
+ +E+
Sbjct: 156 ADKAYEV 162
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 26/153 (16%)
Query: 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV 403
K G + +A +Y+E G++ S +NVL L L +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVL--------------------LYVCSLAEAA 77
Query: 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQL 463
T SS N L++G + + + PN TFT ++ A +KQ
Sbjct: 78 TESSP------NPGLSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQX 131
Query: 464 KWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVA 496
K + P+ Y P + GFC+ G+ D+A + A
Sbjct: 132 KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 198 VSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEA---------VYM 248
+ C + G A L + R V +S + YN LL A E+ +
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 249 FKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR 308
FK+ P+ TF + + + AF+ +FG P + +Y + G CR
Sbjct: 93 FKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCR 152
Query: 309 VNEVARGHEL 318
+ + +E+
Sbjct: 153 KGDADKAYEV 162
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 373 LIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS-SLIDGYCRNGQLNQGLKLCDEMKGK 431
++ GFG+ G ++E + FG +PD++TF+ + GY G L + + G+
Sbjct: 263 VVTGFGRCGEWFASEKV------FGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGE 316
Query: 432 NLSPNVYT 439
N + +T
Sbjct: 317 NAKGSWFT 324
>pdb|3JSB|A Chain A, Crystal Structure Of The N-Terminal Domain Of The
Lymphocytic Choriomeningitis Virus L Protein
pdb|3JSB|B Chain B, Crystal Structure Of The N-Terminal Domain Of The
Lymphocytic Choriomeningitis Virus L Protein
Length = 204
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 202 IRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRL 255
I G+CD + ++ + F + LL L++ +N DE V+ EYFRL
Sbjct: 147 IVDGRCDYDNSFMPEW-------ANFKFRDLLFKLLEYSNQDEKVFEESEYFRL 193
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 452 RLNDARRFLKQL---KWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV 508
R N+ RR + + KW DL + D + G+V+E +++V M EK+ K +
Sbjct: 506 RYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVY--DGDVEELDLLVGLMAEKKIKGFAI 563
Query: 509 TFTILIIGHCMKGRMVEAISIFN 531
+ T I M R +EA F
Sbjct: 564 SETAFYIFLIMATRRLEADRFFT 586
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,471,172
Number of Sequences: 62578
Number of extensions: 709571
Number of successful extensions: 1265
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 13
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)