Query 007626
Match_columns 595
No_of_seqs 760 out of 3297
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 13:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.2E-62 4.7E-67 538.3 61.5 482 86-575 364-880 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.3E-62 1.4E-66 534.6 60.5 453 126-582 373-852 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.4E-58 5.3E-63 503.7 49.4 425 132-572 99-524 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 3.6E-57 7.8E-62 506.1 50.8 461 93-568 121-651 (857)
5 PLN03081 pentatricopeptide (PP 100.0 3.6E-56 7.7E-61 486.6 51.4 436 126-579 126-565 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-55 2.4E-60 494.1 52.0 468 92-579 221-728 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-26 3.6E-31 263.2 60.0 422 134-569 445-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-26 5E-31 262.1 56.9 425 133-572 376-800 (899)
9 PRK11447 cellulose synthase su 99.9 4.7E-19 1E-23 203.9 59.3 398 162-572 275-741 (1157)
10 PRK11447 cellulose synthase su 99.9 5.7E-19 1.2E-23 203.3 59.5 517 36-577 18-706 (1157)
11 PRK11788 tetratricopeptide rep 99.9 2E-20 4.3E-25 191.9 36.5 295 235-537 44-348 (389)
12 PRK11788 tetratricopeptide rep 99.9 2.5E-20 5.5E-25 191.1 37.0 308 267-581 41-357 (389)
13 TIGR00990 3a0801s09 mitochondr 99.9 2E-18 4.4E-23 186.6 52.5 407 158-573 129-573 (615)
14 KOG4626 O-linked N-acetylgluco 99.9 1.4E-19 3E-24 177.6 36.5 402 154-572 114-523 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 1.1E-19 2.5E-24 178.2 35.7 428 134-580 62-494 (966)
16 PRK10049 pgaA outer membrane p 99.9 5.2E-18 1.1E-22 186.8 47.8 404 158-573 17-458 (765)
17 PRK15174 Vi polysaccharide exp 99.9 5.1E-18 1.1E-22 183.0 45.6 328 197-535 48-380 (656)
18 PRK15174 Vi polysaccharide exp 99.9 2.3E-17 4.9E-22 178.0 47.7 333 159-501 45-381 (656)
19 PRK09782 bacteriophage N4 rece 99.9 4.5E-16 9.7E-21 171.8 57.4 234 331-574 476-709 (987)
20 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-16 4.2E-21 171.3 50.3 390 133-537 140-572 (615)
21 PRK10049 pgaA outer membrane p 99.8 1.9E-16 4E-21 174.6 48.1 418 120-552 12-470 (765)
22 PRK14574 hmsH outer membrane p 99.8 9.5E-16 2.1E-20 165.9 52.1 432 134-577 48-519 (822)
23 PRK09782 bacteriophage N4 rece 99.8 9.5E-15 2.1E-19 161.4 50.1 425 132-581 90-682 (987)
24 PRK14574 hmsH outer membrane p 99.8 2.7E-13 5.8E-18 147.0 52.1 412 128-550 76-525 (822)
25 KOG4422 Uncharacterized conser 99.8 9.6E-14 2.1E-18 131.5 39.8 411 155-573 115-592 (625)
26 KOG2002 TPR-containing nuclear 99.7 7E-14 1.5E-18 145.2 41.1 418 154-577 268-751 (1018)
27 KOG4422 Uncharacterized conser 99.7 6.7E-14 1.5E-18 132.5 35.9 363 153-537 204-591 (625)
28 KOG2002 TPR-containing nuclear 99.7 3E-13 6.5E-18 140.6 40.7 489 62-573 146-711 (1018)
29 KOG2003 TPR repeat-containing 99.7 1.4E-14 3.1E-19 137.8 25.5 424 155-588 200-706 (840)
30 KOG0495 HAT repeat protein [RN 99.7 3.1E-11 6.6E-16 120.5 48.2 417 152-579 436-888 (913)
31 KOG2076 RNA polymerase III tra 99.7 5.9E-12 1.3E-16 130.3 40.9 372 154-530 137-549 (895)
32 KOG0495 HAT repeat protein [RN 99.6 2.9E-10 6.4E-15 113.6 47.3 411 165-585 415-860 (913)
33 PF13429 TPR_15: Tetratricopep 99.6 7.9E-15 1.7E-19 142.7 12.1 263 301-570 13-276 (280)
34 KOG2076 RNA polymerase III tra 99.6 5E-11 1.1E-15 123.6 40.0 370 194-570 142-554 (895)
35 TIGR00540 hemY_coli hemY prote 99.6 1.4E-11 3E-16 126.3 36.1 133 436-570 262-398 (409)
36 KOG0547 Translocase of outer m 99.6 3.8E-11 8.3E-16 116.1 36.2 400 158-570 117-565 (606)
37 PRK10747 putative protoheme IX 99.6 2E-11 4.3E-16 124.5 36.8 283 274-570 97-389 (398)
38 PRK10747 putative protoheme IX 99.6 1.3E-11 2.9E-16 125.7 35.4 252 272-535 129-389 (398)
39 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.5E-19 141.5 12.3 260 197-463 14-274 (280)
40 TIGR00540 hemY_coli hemY prote 99.6 1.3E-11 2.9E-16 126.4 35.1 289 238-535 96-398 (409)
41 KOG2003 TPR repeat-containing 99.6 7.6E-12 1.6E-16 119.4 29.2 387 162-557 243-709 (840)
42 KOG1915 Cell cycle control pro 99.5 2E-09 4.4E-14 103.9 44.2 419 154-587 105-551 (677)
43 COG2956 Predicted N-acetylgluc 99.5 3.5E-11 7.7E-16 110.6 30.8 292 275-573 49-349 (389)
44 KOG1155 Anaphase-promoting com 99.5 3.2E-10 6.9E-15 109.2 38.2 368 186-569 159-534 (559)
45 KOG1155 Anaphase-promoting com 99.5 5.2E-09 1.1E-13 101.0 43.3 387 150-572 158-554 (559)
46 KOG1915 Cell cycle control pro 99.5 6E-09 1.3E-13 100.7 42.4 409 155-577 72-506 (677)
47 COG2956 Predicted N-acetylgluc 99.5 1.5E-10 3.2E-15 106.6 30.1 300 158-466 38-347 (389)
48 KOG1126 DNA-binding cell divis 99.5 1.6E-11 3.5E-16 123.4 25.6 289 276-576 334-625 (638)
49 COG3071 HemY Uncharacterized e 99.5 7.6E-10 1.6E-14 105.1 33.3 294 161-465 87-389 (400)
50 COG3071 HemY Uncharacterized e 99.5 1E-09 2.2E-14 104.2 33.7 285 239-534 97-388 (400)
51 KOG1126 DNA-binding cell divis 99.4 5.5E-11 1.2E-15 119.6 26.3 197 332-536 421-620 (638)
52 KOG1173 Anaphase-promoting com 99.4 1.9E-09 4E-14 106.6 34.1 417 146-575 39-522 (611)
53 KOG0547 Translocase of outer m 99.4 2E-09 4.3E-14 104.5 30.7 386 134-536 129-566 (606)
54 TIGR02521 type_IV_pilW type IV 99.4 1.1E-09 2.5E-14 103.1 27.7 200 368-571 32-232 (234)
55 KOG4318 Bicoid mRNA stability 99.3 3.9E-10 8.4E-15 116.5 25.3 364 149-554 18-391 (1088)
56 KOG1156 N-terminal acetyltrans 99.3 7.4E-08 1.6E-12 97.0 40.1 421 135-572 22-469 (700)
57 TIGR02521 type_IV_pilW type IV 99.3 1.3E-09 2.7E-14 102.8 27.2 199 226-428 31-229 (234)
58 PRK12370 invasion protein regu 99.3 2.9E-09 6.2E-14 113.5 31.5 266 189-467 254-536 (553)
59 KOG2047 mRNA splicing factor [ 99.3 7.4E-07 1.6E-11 89.7 45.6 405 155-570 137-614 (835)
60 PRK12370 invasion protein regu 99.3 1.2E-09 2.6E-14 116.5 28.1 252 311-574 276-538 (553)
61 KOG1173 Anaphase-promoting com 99.3 2.2E-08 4.8E-13 99.2 34.1 287 258-553 241-533 (611)
62 KOG4318 Bicoid mRNA stability 99.3 1.6E-09 3.5E-14 112.0 26.6 82 330-414 202-283 (1088)
63 KOG1156 N-terminal acetyltrans 99.3 2.3E-07 4.9E-12 93.6 40.7 421 131-570 52-510 (700)
64 KOG1840 Kinesin light chain [C 99.3 6.4E-09 1.4E-13 105.9 28.7 237 333-569 200-477 (508)
65 KOG1129 TPR repeat-containing 99.3 9.9E-10 2.1E-14 101.2 20.2 238 333-576 224-463 (478)
66 KOG3785 Uncharacterized conser 99.3 1.6E-07 3.6E-12 87.7 34.8 416 134-575 36-494 (557)
67 KOG1174 Anaphase-promoting com 99.3 5.4E-07 1.2E-11 86.1 38.3 295 272-577 207-506 (564)
68 KOG3785 Uncharacterized conser 99.2 5E-07 1.1E-11 84.5 36.5 388 132-545 69-497 (557)
69 PF13041 PPR_2: PPR repeat fam 99.2 3E-11 6.4E-16 82.9 6.4 50 259-308 1-50 (50)
70 PF12569 NARP1: NMDA receptor- 99.2 6.1E-08 1.3E-12 100.1 33.4 305 234-570 12-333 (517)
71 KOG1129 TPR repeat-containing 99.2 1.3E-09 2.9E-14 100.4 18.8 227 267-500 229-457 (478)
72 PF13041 PPR_2: PPR repeat fam 99.2 3.9E-11 8.5E-16 82.3 6.6 50 330-379 1-50 (50)
73 KOG1840 Kinesin light chain [C 99.2 1.4E-08 2.9E-13 103.6 27.1 239 297-535 200-478 (508)
74 KOG4162 Predicted calmodulin-b 99.2 1E-06 2.2E-11 90.8 39.4 411 151-573 318-785 (799)
75 PF12569 NARP1: NMDA receptor- 99.2 1.2E-07 2.5E-12 98.0 33.4 260 162-431 10-291 (517)
76 KOG2376 Signal recognition par 99.2 4.4E-07 9.5E-12 90.6 35.3 147 417-568 356-517 (652)
77 KOG2047 mRNA splicing factor [ 99.1 4.6E-06 1E-10 84.2 40.6 401 157-570 103-578 (835)
78 COG3063 PilF Tfp pilus assembl 99.1 2.5E-07 5.4E-12 81.9 25.2 200 228-431 37-236 (250)
79 KOG0548 Molecular co-chaperone 99.0 1.3E-06 2.9E-11 86.5 32.0 391 164-572 10-456 (539)
80 PRK11189 lipoprotein NlpI; Pro 99.0 3.8E-07 8.1E-12 89.1 28.0 226 311-546 41-274 (296)
81 KOG2376 Signal recognition par 99.0 2.4E-05 5.3E-10 78.5 40.2 414 154-593 44-509 (652)
82 KOG4340 Uncharacterized conser 99.0 9.2E-07 2E-11 81.0 27.8 404 159-583 13-454 (459)
83 KOG1174 Anaphase-promoting com 99.0 1.1E-05 2.5E-10 77.3 36.1 288 239-537 209-501 (564)
84 cd05804 StaR_like StaR_like; a 99.0 3.4E-06 7.4E-11 85.3 35.4 198 227-430 7-214 (355)
85 cd05804 StaR_like StaR_like; a 99.0 3.1E-06 6.8E-11 85.6 34.9 305 261-571 6-336 (355)
86 PRK11189 lipoprotein NlpI; Pro 99.0 3.4E-07 7.3E-12 89.4 26.5 93 194-288 67-159 (296)
87 PRK04841 transcriptional regul 99.0 6.4E-06 1.4E-10 94.3 40.3 338 234-572 382-761 (903)
88 COG3063 PilF Tfp pilus assembl 99.0 1.1E-06 2.4E-11 77.9 24.6 196 335-534 38-234 (250)
89 PRK04841 transcriptional regul 98.9 1.1E-05 2.4E-10 92.4 39.1 339 199-537 382-761 (903)
90 KOG4162 Predicted calmodulin-b 98.9 5.7E-06 1.2E-10 85.4 31.9 390 185-583 317-761 (799)
91 KOG0985 Vesicle coat protein c 98.9 6.5E-05 1.4E-09 79.7 39.6 405 115-572 944-1371(1666)
92 PF04733 Coatomer_E: Coatomer 98.8 2.6E-07 5.6E-12 89.0 17.7 250 269-535 9-264 (290)
93 KOG1914 mRNA cleavage and poly 98.8 0.00023 5E-09 71.0 38.3 415 153-573 17-503 (656)
94 PF04733 Coatomer_E: Coatomer 98.8 3.2E-07 7E-12 88.4 17.0 224 263-501 37-265 (290)
95 KOG0624 dsRNA-activated protei 98.8 4.2E-05 9.1E-10 71.7 29.8 317 224-573 36-372 (504)
96 KOG0624 dsRNA-activated protei 98.8 3E-05 6.6E-10 72.7 28.0 304 155-467 37-371 (504)
97 KOG4340 Uncharacterized conser 98.7 3.2E-06 6.9E-11 77.5 21.0 327 228-569 12-373 (459)
98 KOG3617 WD40 and TPR repeat-co 98.7 3.7E-05 8E-10 79.8 30.7 229 166-428 738-993 (1416)
99 PLN02789 farnesyltranstransfer 98.7 1.5E-05 3.2E-10 78.0 25.5 231 343-579 48-310 (320)
100 KOG0548 Molecular co-chaperone 98.7 0.00018 3.9E-09 71.8 32.5 366 153-537 33-456 (539)
101 KOG0985 Vesicle coat protein c 98.7 0.00062 1.3E-08 72.7 37.2 368 117-535 978-1369(1666)
102 KOG1125 TPR repeat-containing 98.6 5.4E-06 1.2E-10 83.0 21.2 251 201-458 295-563 (579)
103 KOG3616 Selective LIM binding 98.6 0.00013 2.9E-09 74.9 30.5 54 197-252 621-674 (1636)
104 TIGR03302 OM_YfiO outer membra 98.6 7.6E-06 1.7E-10 77.3 21.3 187 365-573 31-234 (235)
105 KOG3617 WD40 and TPR repeat-co 98.6 0.00088 1.9E-08 70.0 36.3 404 155-575 756-1363(1416)
106 KOG3616 Selective LIM binding 98.6 0.0001 2.2E-09 75.7 28.7 189 343-565 743-931 (1636)
107 PLN02789 farnesyltranstransfer 98.6 5.1E-05 1.1E-09 74.2 26.3 215 158-379 39-267 (320)
108 KOG1070 rRNA processing protei 98.6 4.6E-05 1E-09 83.6 27.5 236 330-570 1456-1699(1710)
109 KOG1125 TPR repeat-containing 98.6 8E-06 1.7E-10 81.8 20.3 250 304-564 293-564 (579)
110 PF12854 PPR_1: PPR repeat 98.6 9.3E-08 2E-12 58.8 4.1 32 502-533 2-33 (34)
111 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.6E-12 57.7 4.3 31 257-287 3-33 (34)
112 PRK10370 formate-dependent nit 98.5 2.8E-05 6.1E-10 70.7 20.6 155 374-544 23-180 (198)
113 KOG1127 TPR repeat-containing 98.5 0.00026 5.7E-09 75.5 29.7 182 137-323 473-657 (1238)
114 KOG1070 rRNA processing protei 98.5 7.2E-05 1.6E-09 82.1 25.9 209 188-400 1455-1667(1710)
115 KOG1128 Uncharacterized conser 98.5 2E-05 4.4E-10 81.0 20.6 216 298-535 400-615 (777)
116 KOG1128 Uncharacterized conser 98.5 1.1E-05 2.4E-10 82.9 18.4 221 329-571 395-616 (777)
117 PRK10370 formate-dependent nit 98.5 4.3E-05 9.2E-10 69.6 20.4 155 339-509 23-180 (198)
118 KOG3081 Vesicle coat complex C 98.5 0.00015 3.3E-09 66.0 23.1 105 448-557 148-256 (299)
119 PRK14720 transcript cleavage f 98.4 7.7E-05 1.7E-09 81.2 24.9 239 258-553 28-268 (906)
120 TIGR03302 OM_YfiO outer membra 98.4 3.8E-05 8.3E-10 72.6 20.2 188 154-361 31-232 (235)
121 COG5010 TadD Flp pilus assembl 98.4 9.6E-05 2.1E-09 67.3 21.3 158 371-532 70-227 (257)
122 KOG1127 TPR repeat-containing 98.4 0.00031 6.8E-09 74.9 27.0 182 172-359 474-657 (1238)
123 PRK15179 Vi polysaccharide bio 98.4 0.00022 4.7E-09 77.0 26.9 146 364-514 83-229 (694)
124 KOG3081 Vesicle coat complex C 98.4 0.00036 7.7E-09 63.6 23.7 248 165-430 17-270 (299)
125 PRK15179 Vi polysaccharide bio 98.4 0.00013 2.8E-09 78.7 24.6 214 333-569 29-243 (694)
126 COG4783 Putative Zn-dependent 98.3 0.00017 3.6E-09 71.4 22.4 112 414-528 318-429 (484)
127 PRK15359 type III secretion sy 98.3 1.4E-05 3.1E-10 68.6 12.7 92 442-535 29-120 (144)
128 COG5010 TadD Flp pilus assembl 98.3 0.00019 4.2E-09 65.3 20.0 157 195-356 70-226 (257)
129 PRK14720 transcript cleavage f 98.3 0.00017 3.7E-09 78.6 23.1 230 295-580 30-261 (906)
130 PRK15359 type III secretion sy 98.3 0.0001 2.2E-09 63.4 17.3 95 405-501 27-121 (144)
131 KOG2053 Mitochondrial inherita 98.2 0.012 2.5E-07 62.8 42.0 187 131-326 54-256 (932)
132 TIGR02552 LcrH_SycD type III s 98.2 4.8E-05 1E-09 64.8 14.2 98 474-573 19-116 (135)
133 KOG1914 mRNA cleavage and poly 98.2 0.01 2.2E-07 59.7 36.4 376 188-571 17-464 (656)
134 KOG2053 Mitochondrial inherita 98.2 0.016 3.5E-07 61.8 43.8 232 125-362 12-256 (932)
135 KOG3060 Uncharacterized conser 98.1 0.0026 5.7E-08 57.7 23.0 188 275-467 26-221 (289)
136 COG4783 Putative Zn-dependent 98.1 0.002 4.3E-08 64.0 23.6 140 376-536 315-454 (484)
137 KOG3060 Uncharacterized conser 98.1 0.0017 3.6E-08 59.0 21.0 191 343-537 23-221 (289)
138 TIGR02552 LcrH_SycD type III s 98.0 0.00019 4.1E-09 61.1 14.3 88 199-288 25-112 (135)
139 PF09976 TPR_21: Tetratricopep 98.0 0.00037 8E-09 60.1 16.1 127 439-568 14-144 (145)
140 KOG2041 WD40 repeat protein [G 98.0 0.014 3.1E-07 60.2 28.7 348 154-555 690-1070(1189)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00044 9.5E-09 69.1 18.2 127 439-571 171-297 (395)
142 PF09976 TPR_21: Tetratricopep 97.9 0.00069 1.5E-08 58.4 15.9 126 404-533 14-144 (145)
143 TIGR00756 PPR pentatricopeptid 97.9 2E-05 4.4E-10 49.0 4.3 33 334-366 2-34 (35)
144 TIGR00756 PPR pentatricopeptid 97.9 2.3E-05 5E-10 48.7 4.3 33 263-295 2-34 (35)
145 cd00189 TPR Tetratricopeptide 97.8 0.00044 9.6E-09 53.9 11.8 96 475-572 3-98 (100)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0014 3E-08 65.6 17.5 122 372-499 174-295 (395)
147 PF13812 PPR_3: Pentatricopept 97.8 4E-05 8.8E-10 47.3 4.1 33 262-294 2-34 (34)
148 PF13812 PPR_3: Pentatricopept 97.8 4.7E-05 1E-09 47.0 4.3 33 333-365 2-34 (34)
149 PF10037 MRP-S27: Mitochondria 97.7 0.00055 1.2E-08 68.7 13.7 122 329-450 63-186 (429)
150 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0012 2.5E-08 54.6 13.4 100 474-573 4-107 (119)
151 PF12895 Apc3: Anaphase-promot 97.7 7.9E-05 1.7E-09 57.4 5.5 82 485-568 2-84 (84)
152 cd00189 TPR Tetratricopeptide 97.7 0.00066 1.4E-08 52.9 10.8 94 159-254 3-96 (100)
153 PRK15363 pathogenicity island 97.7 0.0015 3.3E-08 55.5 13.1 92 478-571 41-132 (157)
154 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0021 4.6E-08 53.0 14.0 98 439-536 4-105 (119)
155 PF10037 MRP-S27: Mitochondria 97.6 0.001 2.2E-08 66.9 13.8 123 433-555 62-186 (429)
156 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.9E-08 51.8 10.4 75 444-518 32-115 (120)
157 PF05843 Suf: Suppressor of fo 97.5 0.0016 3.4E-08 63.0 13.4 129 404-535 3-135 (280)
158 PRK02603 photosystem I assembl 97.5 0.0017 3.7E-08 57.8 12.4 86 437-523 35-122 (172)
159 KOG0550 Molecular chaperone (D 97.5 0.11 2.4E-06 50.9 25.0 276 162-466 55-350 (486)
160 KOG0550 Molecular chaperone (D 97.5 0.076 1.7E-06 51.9 23.7 277 200-502 58-351 (486)
161 PF08579 RPM2: Mitochondrial r 97.5 0.0015 3.3E-08 51.5 10.1 77 232-308 31-116 (120)
162 PF01535 PPR: PPR repeat; Int 97.5 0.00014 3.1E-09 43.6 3.5 29 334-362 2-30 (31)
163 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.8E-09 43.8 3.3 29 263-291 2-30 (31)
164 PRK10153 DNA-binding transcrip 97.4 0.012 2.6E-07 61.8 19.1 67 506-574 419-485 (517)
165 KOG2041 WD40 repeat protein [G 97.4 0.11 2.3E-06 54.2 24.6 207 223-463 689-904 (1189)
166 PLN03088 SGT1, suppressor of 97.4 0.0033 7.2E-08 63.0 14.1 102 443-548 8-109 (356)
167 PRK15363 pathogenicity island 97.4 0.014 3E-07 49.7 15.3 95 439-535 37-131 (157)
168 PF13414 TPR_11: TPR repeat; P 97.4 0.00094 2E-08 49.0 7.4 66 506-572 2-68 (69)
169 COG4700 Uncharacterized protei 97.4 0.033 7.2E-07 48.2 17.3 131 399-531 86-217 (251)
170 KOG1130 Predicted G-alpha GTPa 97.4 0.003 6.6E-08 61.1 12.2 132 439-570 197-343 (639)
171 PLN03088 SGT1, suppressor of 97.3 0.0045 9.8E-08 62.1 14.1 92 163-256 9-100 (356)
172 PRK10866 outer membrane biogen 97.3 0.057 1.2E-06 50.9 20.5 73 197-270 38-113 (243)
173 PRK10866 outer membrane biogen 97.3 0.077 1.7E-06 50.0 21.2 59 512-570 180-240 (243)
174 PRK10153 DNA-binding transcrip 97.3 0.026 5.7E-07 59.2 19.5 142 399-545 334-489 (517)
175 KOG0553 TPR repeat-containing 97.3 0.0032 6.8E-08 58.8 11.0 101 164-268 89-189 (304)
176 CHL00033 ycf3 photosystem I as 97.2 0.0076 1.7E-07 53.4 13.2 92 440-532 38-138 (168)
177 PF14938 SNAP: Soluble NSF att 97.2 0.065 1.4E-06 51.9 20.7 124 376-499 123-264 (282)
178 CHL00033 ycf3 photosystem I as 97.2 0.0076 1.7E-07 53.4 13.1 97 472-569 35-140 (168)
179 PRK02603 photosystem I assembl 97.2 0.019 4.2E-07 51.0 15.7 87 404-491 37-125 (172)
180 PF06239 ECSIT: Evolutionarily 97.2 0.0064 1.4E-07 54.3 12.1 115 387-522 34-153 (228)
181 PF12895 Apc3: Anaphase-promot 97.2 0.00057 1.2E-08 52.6 4.8 81 450-532 2-83 (84)
182 PF13432 TPR_16: Tetratricopep 97.2 0.0017 3.7E-08 47.0 7.1 59 514-573 4-62 (65)
183 KOG0553 TPR repeat-containing 97.2 0.003 6.6E-08 58.9 10.2 96 446-546 90-186 (304)
184 PF05843 Suf: Suppressor of fo 97.2 0.011 2.5E-07 57.0 14.5 145 368-517 2-150 (280)
185 COG4235 Cytochrome c biogenesi 97.1 0.03 6.4E-07 52.8 16.1 101 434-536 153-256 (287)
186 PRK10803 tol-pal system protei 97.1 0.01 2.2E-07 56.4 13.2 99 474-574 145-249 (263)
187 PF04840 Vps16_C: Vps16, C-ter 97.1 0.34 7.5E-06 47.5 27.5 105 406-530 181-285 (319)
188 PF14938 SNAP: Soluble NSF att 97.1 0.039 8.6E-07 53.5 17.2 172 157-360 36-224 (282)
189 PF12688 TPR_5: Tetratrico pep 97.1 0.024 5.3E-07 46.5 13.2 90 443-534 7-102 (120)
190 PF04840 Vps16_C: Vps16, C-ter 97.0 0.37 8E-06 47.2 29.9 110 368-497 178-287 (319)
191 PF06239 ECSIT: Evolutionarily 97.0 0.013 2.8E-07 52.4 11.9 104 435-557 45-153 (228)
192 PF07079 DUF1347: Protein of u 97.0 0.47 1E-05 47.3 37.9 428 129-570 15-523 (549)
193 KOG2796 Uncharacterized conser 96.9 0.032 6.9E-07 51.1 13.8 143 157-302 178-325 (366)
194 COG4700 Uncharacterized protei 96.9 0.26 5.6E-06 43.0 20.5 128 364-495 86-216 (251)
195 PF14559 TPR_19: Tetratricopep 96.9 0.0025 5.3E-08 46.6 5.4 51 484-535 3-53 (68)
196 PF12688 TPR_5: Tetratrico pep 96.8 0.072 1.6E-06 43.7 14.0 55 270-324 10-66 (120)
197 KOG2796 Uncharacterized conser 96.8 0.34 7.5E-06 44.6 19.2 133 227-361 178-315 (366)
198 PF14559 TPR_19: Tetratricopep 96.8 0.0055 1.2E-07 44.7 6.7 53 167-220 2-54 (68)
199 COG4235 Cytochrome c biogenesi 96.8 0.06 1.3E-06 50.7 14.7 100 188-289 153-255 (287)
200 KOG1130 Predicted G-alpha GTPa 96.7 0.044 9.5E-07 53.4 13.2 51 233-284 24-78 (639)
201 PF13424 TPR_12: Tetratricopep 96.6 0.0064 1.4E-07 45.8 6.3 63 508-570 6-74 (78)
202 PF13432 TPR_16: Tetratricopep 96.6 0.0095 2.1E-07 43.0 7.0 55 480-535 5-59 (65)
203 PF13371 TPR_9: Tetratricopept 96.6 0.009 2E-07 44.3 7.0 57 516-573 4-60 (73)
204 KOG2280 Vacuolar assembly/sort 96.6 1.3 2.7E-05 47.1 25.8 107 439-564 686-792 (829)
205 PF13525 YfiO: Outer membrane 96.6 0.38 8.2E-06 44.0 18.8 59 199-257 13-73 (203)
206 PF13281 DUF4071: Domain of un 96.6 0.35 7.6E-06 47.9 19.3 165 370-536 144-334 (374)
207 PF13414 TPR_11: TPR repeat; P 96.6 0.012 2.7E-07 42.9 7.2 64 471-535 2-66 (69)
208 KOG2114 Vacuolar assembly/sort 96.5 1.5 3.3E-05 47.1 25.9 179 156-358 334-516 (933)
209 COG3898 Uncharacterized membra 96.4 1.1 2.4E-05 43.9 29.2 143 348-501 245-392 (531)
210 PF13525 YfiO: Outer membrane 96.4 0.75 1.6E-05 42.1 19.3 78 480-562 118-198 (203)
211 PRK10803 tol-pal system protei 96.3 0.096 2.1E-06 49.8 13.3 87 449-535 155-245 (263)
212 PF03704 BTAD: Bacterial trans 96.3 0.11 2.5E-06 44.5 12.8 71 474-545 64-139 (146)
213 PF07079 DUF1347: Protein of u 96.2 1.5 3.3E-05 43.9 39.5 367 166-547 89-530 (549)
214 KOG2280 Vacuolar assembly/sort 96.2 2.1 4.6E-05 45.5 34.2 86 473-568 685-770 (829)
215 PRK15331 chaperone protein Sic 96.2 0.06 1.3E-06 46.2 10.2 87 447-535 47-133 (165)
216 PF13281 DUF4071: Domain of un 96.0 1.8 3.9E-05 43.0 20.8 164 336-501 145-334 (374)
217 COG1729 Uncharacterized protei 96.0 0.098 2.1E-06 48.7 11.2 103 474-577 144-250 (262)
218 PF13424 TPR_12: Tetratricopep 96.0 0.02 4.4E-07 43.0 5.8 63 473-535 6-74 (78)
219 PF09205 DUF1955: Domain of un 95.9 0.74 1.6E-05 37.8 14.7 66 506-572 85-150 (161)
220 PF03704 BTAD: Bacterial trans 95.9 0.055 1.2E-06 46.5 9.0 72 228-300 64-140 (146)
221 KOG1538 Uncharacterized conser 95.9 1.1 2.3E-05 46.7 18.8 217 229-464 559-800 (1081)
222 COG5107 RNA14 Pre-mRNA 3'-end 95.8 2.3 5E-05 42.5 20.4 147 367-518 397-546 (660)
223 PF12921 ATP13: Mitochondrial 95.8 0.18 3.8E-06 41.9 11.0 98 436-553 1-99 (126)
224 PRK15331 chaperone protein Sic 95.8 0.79 1.7E-05 39.5 14.9 87 412-500 47-133 (165)
225 PF12921 ATP13: Mitochondrial 95.7 0.17 3.7E-06 41.9 10.7 50 292-341 48-97 (126)
226 PF13371 TPR_9: Tetratricopept 95.7 0.073 1.6E-06 39.3 7.8 53 482-535 5-57 (73)
227 COG5107 RNA14 Pre-mRNA 3'-end 95.7 2.6 5.7E-05 42.1 35.1 132 437-572 397-532 (660)
228 KOG1538 Uncharacterized conser 95.6 0.83 1.8E-05 47.5 16.7 253 259-535 554-845 (1081)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.1 2.2E-06 52.4 9.6 97 470-572 73-175 (453)
230 KOG1585 Protein required for f 95.3 2.1 4.6E-05 39.2 16.4 208 156-390 31-250 (308)
231 KOG1258 mRNA processing protei 95.2 4.7 0.0001 42.0 32.6 183 366-556 296-489 (577)
232 KOG4555 TPR repeat-containing 95.1 0.5 1.1E-05 38.6 10.8 54 447-501 53-106 (175)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.46 1E-05 47.9 13.1 67 153-220 72-141 (453)
234 PF04053 Coatomer_WDAD: Coatom 95.0 0.85 1.8E-05 47.0 15.3 156 235-427 270-427 (443)
235 KOG0543 FKBP-type peptidyl-pro 95.0 0.47 1E-05 46.7 12.5 97 403-501 258-355 (397)
236 COG3118 Thioredoxin domain-con 94.9 2.7 5.8E-05 39.9 16.8 21 232-252 174-194 (304)
237 smart00299 CLH Clathrin heavy 94.9 2 4.4E-05 36.4 15.4 127 122-272 9-136 (140)
238 KOG0543 FKBP-type peptidyl-pro 94.8 0.61 1.3E-05 46.0 12.8 61 228-289 259-319 (397)
239 KOG2610 Uncharacterized conser 94.8 0.75 1.6E-05 44.0 12.7 155 378-534 114-274 (491)
240 PF10300 DUF3808: Protein of u 94.7 2.2 4.9E-05 44.5 17.7 119 450-571 246-376 (468)
241 PF08631 SPO22: Meiosis protei 94.7 4.4 9.6E-05 39.1 27.0 165 403-569 85-273 (278)
242 COG0457 NrfG FOG: TPR repeat [ 94.7 3.4 7.3E-05 37.7 31.0 201 369-572 61-266 (291)
243 KOG1941 Acetylcholine receptor 94.5 1.5 3.2E-05 42.6 14.1 53 515-567 214-271 (518)
244 COG4105 ComL DNA uptake lipopr 94.5 4 8.8E-05 37.9 22.0 60 513-573 173-235 (254)
245 PRK11906 transcriptional regul 94.5 4.5 9.8E-05 41.1 18.3 80 453-535 320-400 (458)
246 PF13512 TPR_18: Tetratricopep 94.4 1.3 2.9E-05 37.2 12.2 55 447-501 20-76 (142)
247 COG3898 Uncharacterized membra 94.4 5.7 0.00012 39.1 32.9 280 239-536 97-392 (531)
248 PF10300 DUF3808: Protein of u 94.3 3.3 7.1E-05 43.3 17.9 163 370-535 191-375 (468)
249 KOG3941 Intermediate in Toll s 94.3 0.8 1.7E-05 42.7 11.5 105 188-311 64-173 (406)
250 PF04053 Coatomer_WDAD: Coatom 94.3 2.6 5.6E-05 43.5 16.7 158 164-356 269-426 (443)
251 COG4105 ComL DNA uptake lipopr 94.3 4.6 0.0001 37.6 21.8 70 203-272 46-117 (254)
252 KOG2396 HAT (Half-A-TPR) repea 94.2 7.5 0.00016 39.6 35.1 85 147-233 96-181 (568)
253 KOG1550 Extracellular protein 94.1 7.9 0.00017 41.5 20.8 279 277-573 228-540 (552)
254 COG3118 Thioredoxin domain-con 94.1 4.3 9.2E-05 38.6 16.1 144 163-310 141-286 (304)
255 KOG3941 Intermediate in Toll s 94.1 0.78 1.7E-05 42.8 11.0 87 435-521 65-172 (406)
256 PF09205 DUF1955: Domain of un 94.0 2.9 6.4E-05 34.4 13.6 61 336-397 90-150 (161)
257 KOG2610 Uncharacterized conser 94.0 3.9 8.5E-05 39.3 15.6 158 164-323 111-274 (491)
258 KOG1920 IkappaB kinase complex 93.9 14 0.0003 41.9 25.9 112 404-533 941-1052(1265)
259 KOG4555 TPR repeat-containing 93.8 0.81 1.8E-05 37.4 9.4 94 163-257 50-146 (175)
260 PF13512 TPR_18: Tetratricopep 93.7 1.4 3.1E-05 37.0 11.2 79 198-276 17-97 (142)
261 PF13428 TPR_14: Tetratricopep 93.7 0.066 1.4E-06 35.0 2.6 33 545-577 4-36 (44)
262 KOG1920 IkappaB kinase complex 93.6 16 0.00035 41.4 21.7 115 329-463 932-1052(1265)
263 PF08631 SPO22: Meiosis protei 93.6 7.5 0.00016 37.5 25.5 17 482-498 256-272 (278)
264 smart00299 CLH Clathrin heavy 93.5 4.1 8.9E-05 34.5 16.1 84 407-498 12-95 (140)
265 COG1729 Uncharacterized protei 93.5 1.3 2.9E-05 41.4 11.6 62 440-501 181-244 (262)
266 COG0457 NrfG FOG: TPR repeat [ 93.3 6.2 0.00013 35.8 30.7 201 333-536 60-265 (291)
267 COG4649 Uncharacterized protei 93.1 5.4 0.00012 34.6 15.2 54 272-325 143-196 (221)
268 PF04184 ST7: ST7 protein; In 93.1 9.8 0.00021 39.0 17.6 59 476-534 263-322 (539)
269 PRK11906 transcriptional regul 93.0 4.2 9.2E-05 41.3 15.2 88 486-575 318-405 (458)
270 KOG1585 Protein required for f 92.8 7.8 0.00017 35.7 19.2 205 334-565 33-250 (308)
271 COG2976 Uncharacterized protei 92.8 6.7 0.00014 34.9 14.4 91 478-573 95-190 (207)
272 COG4649 Uncharacterized protei 92.6 6.4 0.00014 34.2 14.1 52 379-430 144-195 (221)
273 PF13428 TPR_14: Tetratricopep 92.5 0.39 8.5E-06 31.2 5.0 39 158-197 3-41 (44)
274 PF13170 DUF4003: Protein of u 92.3 12 0.00025 36.5 20.7 130 277-408 78-223 (297)
275 KOG2114 Vacuolar assembly/sort 92.0 22 0.00047 38.9 26.1 82 163-251 375-456 (933)
276 PF13176 TPR_7: Tetratricopept 91.8 0.39 8.4E-06 29.7 4.1 26 544-569 1-26 (36)
277 KOG1550 Extracellular protein 91.7 22 0.00047 38.2 26.0 180 207-397 228-427 (552)
278 KOG1941 Acetylcholine receptor 91.7 5.3 0.00011 38.9 13.2 238 122-359 6-273 (518)
279 COG3629 DnrI DNA-binding trans 91.0 2.7 5.8E-05 40.0 10.6 79 226-305 153-236 (280)
280 PF04184 ST7: ST7 protein; In 90.9 21 0.00046 36.7 19.8 58 302-359 265-322 (539)
281 COG1747 Uncharacterized N-term 90.8 21 0.00047 36.6 21.3 182 363-552 62-249 (711)
282 COG3629 DnrI DNA-binding trans 90.6 3 6.6E-05 39.7 10.6 74 440-514 156-234 (280)
283 COG4785 NlpI Lipoprotein NlpI, 89.9 15 0.00032 33.3 17.8 180 380-572 78-267 (297)
284 PF13431 TPR_17: Tetratricopep 89.8 0.44 9.6E-06 29.0 2.9 32 530-562 2-33 (34)
285 PF10602 RPN7: 26S proteasome 89.7 6.5 0.00014 34.9 11.6 97 227-323 37-140 (177)
286 PF07719 TPR_2: Tetratricopept 89.5 1.1 2.3E-05 26.9 4.7 30 544-573 3-32 (34)
287 KOG4234 TPR repeat-containing 89.4 4.9 0.00011 35.8 10.0 90 446-536 104-197 (271)
288 PF02259 FAT: FAT domain; Int 89.2 25 0.00055 35.0 22.8 54 267-324 4-57 (352)
289 PF10602 RPN7: 26S proteasome 89.2 5.5 0.00012 35.4 10.7 98 473-570 37-141 (177)
290 PF00515 TPR_1: Tetratricopept 89.0 1.1 2.5E-05 26.9 4.5 31 543-573 2-32 (34)
291 PF13176 TPR_7: Tetratricopept 88.6 1.1 2.4E-05 27.5 4.2 27 509-535 1-27 (36)
292 PF07035 Mic1: Colon cancer-as 88.3 17 0.00036 31.8 15.6 134 423-570 15-148 (167)
293 COG1747 Uncharacterized N-term 88.1 34 0.00074 35.2 24.7 181 328-516 62-248 (711)
294 KOG1258 mRNA processing protei 86.9 44 0.00096 35.2 32.9 400 158-569 81-542 (577)
295 KOG4570 Uncharacterized conser 86.5 8.4 0.00018 36.8 10.3 129 337-467 24-165 (418)
296 PF09613 HrpB1_HrpK: Bacterial 86.1 22 0.00047 30.8 13.3 51 308-360 22-72 (160)
297 PF13374 TPR_10: Tetratricopep 86.0 1.9 4.1E-05 27.2 4.4 30 542-571 2-31 (42)
298 TIGR02561 HrpB1_HrpK type III 85.5 22 0.00047 30.3 12.0 51 309-361 23-73 (153)
299 PF13174 TPR_6: Tetratricopept 85.5 1.5 3.3E-05 25.9 3.6 29 545-573 3-31 (33)
300 KOG4570 Uncharacterized conser 84.8 9.9 0.00021 36.4 9.9 104 291-396 59-164 (418)
301 PF13170 DUF4003: Protein of u 84.2 43 0.00092 32.6 22.1 131 242-374 78-224 (297)
302 PF13929 mRNA_stabil: mRNA sta 84.2 40 0.00087 32.2 16.4 116 312-427 144-263 (292)
303 PF13431 TPR_17: Tetratricopep 84.1 1.4 3E-05 26.8 2.8 21 190-210 12-32 (34)
304 KOG0276 Vesicle coat complex C 83.8 11 0.00024 39.4 10.5 149 239-428 599-747 (794)
305 PF07035 Mic1: Colon cancer-as 83.7 29 0.00064 30.3 15.1 100 389-498 16-115 (167)
306 PF11207 DUF2989: Protein of u 83.5 18 0.00039 32.5 10.6 75 487-562 121-198 (203)
307 PRK11619 lytic murein transgly 83.4 75 0.0016 34.8 36.9 97 141-243 84-180 (644)
308 KOG1464 COP9 signalosome, subu 83.3 41 0.00088 31.6 17.9 204 290-494 20-253 (440)
309 PF09613 HrpB1_HrpK: Bacterial 83.3 29 0.00063 30.0 14.2 52 449-501 22-73 (160)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 82.2 12 0.00026 29.0 7.7 45 455-499 25-69 (103)
311 KOG0276 Vesicle coat complex C 82.1 27 0.00059 36.7 12.5 132 334-498 616-747 (794)
312 PF13374 TPR_10: Tetratricopep 81.9 3.8 8.3E-05 25.7 4.6 28 508-535 3-30 (42)
313 PF00515 TPR_1: Tetratricopept 81.7 4.8 0.0001 24.0 4.7 28 228-255 3-30 (34)
314 PRK15180 Vi polysaccharide bio 81.4 13 0.00027 37.8 9.7 132 409-545 296-428 (831)
315 COG4785 NlpI Lipoprotein NlpI, 81.4 42 0.00092 30.5 14.9 32 226-257 99-130 (297)
316 PF13181 TPR_8: Tetratricopept 81.3 4.2 9.1E-05 24.2 4.4 31 543-573 2-32 (34)
317 PF02284 COX5A: Cytochrome c o 80.5 9 0.0002 30.0 6.6 45 456-500 29-73 (108)
318 PF02259 FAT: FAT domain; Int 80.5 64 0.0014 32.1 24.4 63 368-430 147-212 (352)
319 PF11207 DUF2989: Protein of u 80.5 19 0.00041 32.4 9.6 71 420-491 124-197 (203)
320 KOG4648 Uncharacterized conser 80.2 5.1 0.00011 38.7 6.3 94 445-542 105-198 (536)
321 KOG4648 Uncharacterized conser 80.2 4.4 9.5E-05 39.1 5.9 91 163-255 104-194 (536)
322 PF07719 TPR_2: Tetratricopept 80.1 4.7 0.0001 23.9 4.3 24 512-535 6-29 (34)
323 COG2909 MalT ATP-dependent tra 79.5 1.1E+02 0.0024 34.1 29.9 226 343-568 426-685 (894)
324 PRK09687 putative lyase; Provi 78.4 66 0.0014 31.0 28.9 18 365-382 204-221 (280)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 77.9 8.1 0.00017 29.9 5.6 47 488-534 23-69 (103)
326 COG3947 Response regulator con 77.3 69 0.0015 30.6 15.6 60 510-570 282-341 (361)
327 PF10345 Cohesin_load: Cohesin 77.1 1.2E+02 0.0026 33.2 42.1 413 156-570 59-605 (608)
328 KOG2066 Vacuolar assembly/sort 77.1 1.2E+02 0.0026 33.3 26.8 102 198-308 363-467 (846)
329 TIGR02508 type_III_yscG type I 76.0 30 0.00066 27.1 8.2 85 277-370 21-105 (115)
330 PRK11619 lytic murein transgly 75.7 1.3E+02 0.0028 33.0 32.8 118 450-570 254-374 (644)
331 PF07721 TPR_4: Tetratricopept 75.2 4.1 8.9E-05 22.8 2.7 22 545-566 4-25 (26)
332 TIGR03504 FimV_Cterm FimV C-te 75.1 6.2 0.00013 25.7 3.8 26 547-572 4-29 (44)
333 KOG2297 Predicted translation 74.7 83 0.0018 30.3 18.9 157 313-492 184-341 (412)
334 PF02284 COX5A: Cytochrome c o 74.7 40 0.00086 26.6 10.0 59 279-339 28-86 (108)
335 KOG4234 TPR repeat-containing 74.5 19 0.00041 32.2 7.7 92 163-256 102-198 (271)
336 PF04097 Nic96: Nup93/Nic96; 74.3 1.4E+02 0.003 32.6 22.5 60 160-220 115-181 (613)
337 COG4455 ImpE Protein of avirul 72.7 24 0.00052 32.1 8.0 76 229-305 4-81 (273)
338 COG2909 MalT ATP-dependent tra 72.6 1.7E+02 0.0036 32.8 32.0 227 235-462 424-684 (894)
339 PRK09687 putative lyase; Provi 71.8 99 0.0021 29.8 30.7 22 513-535 241-262 (280)
340 PF07163 Pex26: Pex26 protein; 71.6 58 0.0013 30.9 10.6 87 407-495 88-181 (309)
341 KOG2063 Vacuolar assembly/sort 71.5 1.8E+02 0.004 32.8 18.1 116 334-449 506-638 (877)
342 KOG0890 Protein kinase of the 70.8 2.9E+02 0.0063 34.8 27.8 61 472-535 1670-1730(2382)
343 PF00637 Clathrin: Region in C 70.4 3.5 7.6E-05 35.0 2.5 26 155-180 41-66 (143)
344 PF13181 TPR_8: Tetratricopept 69.5 14 0.00031 21.8 4.5 27 509-535 3-29 (34)
345 TIGR02561 HrpB1_HrpK type III 68.9 73 0.0016 27.2 11.8 53 168-221 22-74 (153)
346 smart00028 TPR Tetratricopepti 68.8 11 0.00024 21.1 3.9 27 545-571 4-30 (34)
347 PF09986 DUF2225: Uncharacteri 68.8 61 0.0013 29.8 10.3 67 510-576 121-199 (214)
348 PF00637 Clathrin: Region in C 68.7 1.2 2.7E-05 37.9 -0.7 53 163-215 14-66 (143)
349 COG3947 Response regulator con 68.7 1.1E+02 0.0025 29.3 17.5 71 474-545 281-356 (361)
350 PF13174 TPR_6: Tetratricopept 68.2 11 0.00024 22.0 3.8 24 232-255 6-29 (33)
351 COG2976 Uncharacterized protei 68.2 91 0.002 28.0 15.0 91 445-537 97-189 (207)
352 PF10345 Cohesin_load: Cohesin 68.1 1.9E+02 0.0041 31.6 34.2 402 132-535 72-605 (608)
353 PF10579 Rapsyn_N: Rapsyn N-te 67.7 16 0.00034 27.2 4.9 47 519-565 18-66 (80)
354 TIGR03504 FimV_Cterm FimV C-te 67.2 13 0.00028 24.2 4.0 21 479-499 6-26 (44)
355 COG4455 ImpE Protein of avirul 67.1 32 0.0007 31.3 7.6 75 160-235 5-81 (273)
356 PF11846 DUF3366: Domain of un 66.4 31 0.00068 31.0 8.0 35 539-573 141-175 (193)
357 COG0790 FOG: TPR repeat, SEL1 65.9 1.3E+02 0.0028 29.0 23.6 77 490-573 173-268 (292)
358 COG5159 RPN6 26S proteasome re 65.6 1.3E+02 0.0028 28.8 16.0 200 161-360 8-234 (421)
359 KOG1586 Protein required for f 65.5 1.2E+02 0.0025 28.2 19.1 16 485-500 167-182 (288)
360 PF07163 Pex26: Pex26 protein; 64.9 1.3E+02 0.0029 28.7 13.4 89 196-284 88-181 (309)
361 PF12862 Apc5: Anaphase-promot 64.9 40 0.00087 26.1 7.3 19 551-569 50-68 (94)
362 PF06552 TOM20_plant: Plant sp 64.8 43 0.00092 29.6 7.8 28 523-552 96-123 (186)
363 KOG2063 Vacuolar assembly/sort 64.4 2.5E+02 0.0055 31.8 20.2 27 158-184 506-532 (877)
364 PF13762 MNE1: Mitochondrial s 63.7 92 0.002 26.5 10.1 80 229-308 42-127 (145)
365 COG5187 RPN7 26S proteasome re 63.3 1.4E+02 0.0031 28.5 14.2 100 330-431 113-221 (412)
366 KOG2066 Vacuolar assembly/sort 62.8 2.4E+02 0.0053 31.0 28.1 102 163-273 363-467 (846)
367 COG0790 FOG: TPR repeat, SEL1 62.7 1.5E+02 0.0033 28.6 22.7 84 455-545 173-275 (292)
368 TIGR02508 type_III_yscG type I 62.7 74 0.0016 25.0 8.3 52 480-537 47-98 (115)
369 KOG1464 COP9 signalosome, subu 62.4 1.4E+02 0.0031 28.2 16.2 204 328-532 22-256 (440)
370 PHA02875 ankyrin repeat protei 61.8 1.9E+02 0.0042 29.5 14.4 208 167-401 10-229 (413)
371 PF11846 DUF3366: Domain of un 58.8 21 0.00046 32.1 5.4 51 135-185 123-173 (193)
372 PF13929 mRNA_stabil: mRNA sta 57.9 1.8E+02 0.0039 28.0 21.1 137 416-552 142-288 (292)
373 KOG0687 26S proteasome regulat 57.7 1.9E+02 0.0042 28.2 15.8 96 403-500 105-209 (393)
374 KOG3364 Membrane protein invol 56.5 1.1E+02 0.0025 25.6 8.4 68 469-536 29-100 (149)
375 PF09670 Cas_Cas02710: CRISPR- 56.0 2.1E+02 0.0047 29.0 12.5 55 376-431 140-198 (379)
376 PHA02875 ankyrin repeat protei 55.6 1.1E+02 0.0024 31.4 10.8 208 305-543 8-231 (413)
377 PF10579 Rapsyn_N: Rapsyn N-te 55.5 41 0.0009 25.1 5.2 47 484-530 18-66 (80)
378 PRK10941 hypothetical protein; 55.3 85 0.0018 30.0 8.9 59 476-535 185-243 (269)
379 KOG4077 Cytochrome c oxidase, 54.8 84 0.0018 25.9 7.3 42 459-500 71-112 (149)
380 PF06552 TOM20_plant: Plant sp 52.9 1.4E+02 0.0031 26.4 9.0 41 488-536 96-136 (186)
381 PF14689 SPOB_a: Sensor_kinase 52.8 33 0.0007 24.3 4.3 23 512-534 28-50 (62)
382 PF08424 NRDE-2: NRDE-2, neces 50.9 2.6E+02 0.0056 27.6 18.4 82 399-482 16-109 (321)
383 PF14689 SPOB_a: Sensor_kinase 50.6 40 0.00087 23.8 4.5 28 543-570 24-51 (62)
384 KOG4507 Uncharacterized conser 50.0 1.1E+02 0.0024 32.3 9.1 103 273-378 619-721 (886)
385 PRK10564 maltose regulon perip 49.8 43 0.00093 32.2 5.9 35 511-545 261-295 (303)
386 KOG4507 Uncharacterized conser 49.2 1.8E+02 0.0039 30.8 10.4 86 345-431 620-705 (886)
387 PF09477 Type_III_YscG: Bacter 49.1 1.4E+02 0.003 23.9 9.9 80 275-362 20-99 (116)
388 KOG2471 TPR repeat-containing 48.3 3.4E+02 0.0074 28.3 12.3 107 447-555 250-382 (696)
389 KOG2908 26S proteasome regulat 46.8 2.9E+02 0.0063 27.2 10.7 77 442-518 80-167 (380)
390 PF08311 Mad3_BUB1_I: Mad3/BUB 46.6 1.4E+02 0.0029 24.8 7.8 44 525-568 81-125 (126)
391 PF11848 DUF3368: Domain of un 46.1 83 0.0018 20.8 5.2 31 519-549 14-44 (48)
392 KOG4077 Cytochrome c oxidase, 45.6 84 0.0018 25.9 6.0 46 490-535 67-112 (149)
393 PF11848 DUF3368: Domain of un 44.7 85 0.0019 20.8 5.1 33 167-199 13-45 (48)
394 KOG1308 Hsp70-interacting prot 44.5 14 0.0003 35.9 1.8 91 168-260 126-216 (377)
395 PF12862 Apc5: Anaphase-promot 44.4 1.4E+02 0.0031 23.0 7.3 53 483-535 9-69 (94)
396 PF11663 Toxin_YhaV: Toxin wit 44.4 31 0.00067 28.7 3.5 35 165-201 104-138 (140)
397 PF07575 Nucleopor_Nup85: Nup8 44.0 4.5E+02 0.0097 28.4 20.0 75 423-499 391-465 (566)
398 PF14669 Asp_Glu_race_2: Putat 43.7 2.4E+02 0.0053 25.3 15.2 25 372-396 137-161 (233)
399 smart00386 HAT HAT (Half-A-TPR 43.7 9.6 0.00021 22.1 0.4 27 521-548 1-27 (33)
400 PF10366 Vps39_1: Vacuolar sor 42.9 1.2E+02 0.0027 24.3 6.8 27 509-535 41-67 (108)
401 PF00244 14-3-3: 14-3-3 protei 42.9 2.9E+02 0.0062 25.9 12.1 56 373-428 7-63 (236)
402 KOG2471 TPR repeat-containing 42.2 4.2E+02 0.0092 27.6 13.9 105 342-448 250-380 (696)
403 PF04762 IKI3: IKI3 family; I 42.2 3.8E+02 0.0083 31.0 13.0 28 369-396 814-843 (928)
404 PF09670 Cas_Cas02710: CRISPR- 41.9 3.9E+02 0.0084 27.1 12.4 57 409-466 138-198 (379)
405 PF11838 ERAP1_C: ERAP1-like C 41.8 3.4E+02 0.0074 26.5 19.2 30 401-430 200-229 (324)
406 cd08819 CARD_MDA5_2 Caspase ac 41.0 1.6E+02 0.0035 22.5 6.9 38 519-561 48-85 (88)
407 cd00280 TRFH Telomeric Repeat 41.0 1.9E+02 0.0042 25.7 7.9 48 242-289 85-139 (200)
408 cd00280 TRFH Telomeric Repeat 40.5 2E+02 0.0042 25.7 7.9 20 516-535 120-139 (200)
409 PRK15180 Vi polysaccharide bio 40.4 4.4E+02 0.0096 27.3 27.7 123 163-289 296-419 (831)
410 KOG3364 Membrane protein invol 40.4 2.2E+02 0.0049 23.9 8.5 66 436-501 31-100 (149)
411 PF15297 CKAP2_C: Cytoskeleton 39.7 1.8E+02 0.0039 28.7 8.4 45 158-202 142-186 (353)
412 KOG2297 Predicted translation 39.5 3.7E+02 0.008 26.1 17.9 18 334-351 323-340 (412)
413 KOG0991 Replication factor C, 39.1 3.3E+02 0.0071 25.4 13.1 129 370-507 133-273 (333)
414 PF14853 Fis1_TPR_C: Fis1 C-te 38.7 1.2E+02 0.0027 20.6 5.3 20 516-535 10-29 (53)
415 PF09868 DUF2095: Uncharacteri 38.6 1.4E+02 0.003 24.0 6.1 46 150-202 61-106 (128)
416 PF11663 Toxin_YhaV: Toxin wit 38.6 31 0.00068 28.7 2.7 32 237-270 106-137 (140)
417 KOG4642 Chaperone-dependent E3 38.5 3.4E+02 0.0073 25.4 10.8 117 342-462 20-142 (284)
418 KOG2659 LisH motif-containing 37.7 3.3E+02 0.0072 25.1 9.9 102 466-567 20-128 (228)
419 KOG3677 RNA polymerase I-assoc 37.5 2.5E+02 0.0054 28.5 9.0 58 160-217 239-298 (525)
420 COG0735 Fur Fe2+/Zn2+ uptake r 36.9 1.4E+02 0.0031 25.4 6.7 13 243-255 37-49 (145)
421 PF07575 Nucleopor_Nup85: Nup8 36.9 3.5E+02 0.0077 29.2 11.3 57 335-393 408-464 (566)
422 COG4003 Uncharacterized protei 36.4 1.5E+02 0.0033 22.1 5.6 40 151-197 32-71 (98)
423 PRK10564 maltose regulon perip 36.0 67 0.0014 31.0 4.9 28 230-257 261-288 (303)
424 PF12968 DUF3856: Domain of Un 35.9 2.5E+02 0.0053 23.1 8.0 62 508-569 56-127 (144)
425 PRK13342 recombination factor 35.7 5.1E+02 0.011 26.6 19.9 32 486-517 244-275 (413)
426 KOG0686 COP9 signalosome, subu 35.4 5E+02 0.011 26.4 15.1 59 193-252 152-213 (466)
427 PF14853 Fis1_TPR_C: Fis1 C-te 35.2 1.5E+02 0.0032 20.2 5.4 31 478-510 7-37 (53)
428 PF04910 Tcf25: Transcriptiona 35.0 4.8E+02 0.011 26.2 22.7 56 409-464 110-166 (360)
429 PF09477 Type_III_YscG: Bacter 35.0 2.4E+02 0.0051 22.6 8.6 77 453-536 22-98 (116)
430 PRK10941 hypothetical protein; 34.2 4.3E+02 0.0092 25.3 10.6 60 266-326 186-245 (269)
431 KOG1839 Uncharacterized protei 33.7 4.2E+02 0.0091 31.2 11.2 151 343-493 943-1120(1236)
432 PRK13342 recombination factor 33.1 5.6E+02 0.012 26.3 18.7 33 345-377 243-275 (413)
433 KOG2908 26S proteasome regulat 33.1 4.9E+02 0.011 25.7 10.5 80 404-483 77-167 (380)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 33.0 2.8E+02 0.0061 22.9 8.3 43 455-497 81-124 (126)
435 KOG4567 GTPase-activating prot 32.6 2.7E+02 0.0059 27.0 8.1 56 353-413 264-319 (370)
436 KOG2034 Vacuolar sorting prote 32.4 7.8E+02 0.017 27.8 28.9 51 198-252 365-415 (911)
437 KOG0376 Serine-threonine phosp 32.4 82 0.0018 32.4 5.1 105 163-271 11-115 (476)
438 PF09454 Vps23_core: Vps23 cor 32.4 1.3E+02 0.0028 21.5 4.8 49 154-203 6-54 (65)
439 PF09454 Vps23_core: Vps23 cor 32.3 95 0.0021 22.2 4.1 50 224-274 6-55 (65)
440 COG5187 RPN7 26S proteasome re 32.3 4.7E+02 0.01 25.2 14.8 22 369-390 117-138 (412)
441 PF09797 NatB_MDM20: N-acetylt 32.2 5.3E+02 0.012 25.9 21.5 122 407-531 185-310 (365)
442 PRK13800 putative oxidoreducta 32.2 8.5E+02 0.018 28.2 29.5 248 188-465 632-880 (897)
443 PF08424 NRDE-2: NRDE-2, neces 32.0 5.1E+02 0.011 25.5 19.6 97 364-462 16-127 (321)
444 PF10366 Vps39_1: Vacuolar sor 32.0 2.3E+02 0.005 22.7 6.8 14 236-249 49-62 (108)
445 KOG0686 COP9 signalosome, subu 31.9 5.7E+02 0.012 26.0 14.0 91 157-249 151-252 (466)
446 KOG2582 COP9 signalosome, subu 31.2 5.5E+02 0.012 25.7 19.4 118 123-249 39-163 (422)
447 PF04097 Nic96: Nup93/Nic96; 31.1 7.4E+02 0.016 27.1 21.1 29 438-466 325-356 (613)
448 KOG4642 Chaperone-dependent E3 30.8 4.6E+02 0.0099 24.6 11.2 117 412-532 20-142 (284)
449 PF04190 DUF410: Protein of un 30.8 4.7E+02 0.01 24.8 18.6 17 483-499 152-168 (260)
450 KOG2422 Uncharacterized conser 30.5 7E+02 0.015 26.7 16.8 155 169-323 251-446 (665)
451 KOG4567 GTPase-activating prot 29.9 2.8E+02 0.0062 26.9 7.8 42 423-464 264-305 (370)
452 PF11817 Foie-gras_1: Foie gra 29.5 3.1E+02 0.0066 25.8 8.4 53 513-565 184-241 (247)
453 KOG1308 Hsp70-interacting prot 29.3 40 0.00087 32.9 2.2 88 415-504 127-214 (377)
454 COG0735 Fur Fe2+/Zn2+ uptake r 29.3 1.5E+02 0.0033 25.2 5.6 46 161-206 25-70 (145)
455 cd07153 Fur_like Ferric uptake 28.6 1.7E+02 0.0036 23.5 5.7 47 162-208 6-52 (116)
456 PF10475 DUF2450: Protein of u 28.5 5.5E+02 0.012 24.8 10.5 52 408-465 104-155 (291)
457 PF01475 FUR: Ferric uptake re 27.8 1.6E+02 0.0034 23.9 5.4 48 160-207 11-58 (120)
458 PF11817 Foie-gras_1: Foie gra 27.8 2.9E+02 0.0064 25.9 7.9 56 266-321 183-243 (247)
459 KOG2396 HAT (Half-A-TPR) repea 27.6 7.4E+02 0.016 26.0 27.6 84 503-587 455-541 (568)
460 KOG1498 26S proteasome regulat 27.6 6.6E+02 0.014 25.4 15.7 22 266-287 136-157 (439)
461 PF12926 MOZART2: Mitotic-spin 27.4 2.8E+02 0.0062 21.2 8.9 48 528-575 29-76 (88)
462 COG5108 RPO41 Mitochondrial DN 27.3 3.4E+02 0.0074 29.4 8.5 74 161-237 33-114 (1117)
463 cd08819 CARD_MDA5_2 Caspase ac 26.8 2.9E+02 0.0064 21.1 7.4 11 418-428 52-62 (88)
464 PF03745 DUF309: Domain of unk 26.7 2.3E+02 0.0051 20.0 6.1 47 518-564 10-61 (62)
465 PF04910 Tcf25: Transcriptiona 26.4 6.8E+02 0.015 25.2 20.5 120 364-500 37-167 (360)
466 PF09986 DUF2225: Uncharacteri 26.2 5.1E+02 0.011 23.7 11.4 49 489-537 142-195 (214)
467 PF02847 MA3: MA3 domain; Int 26.2 2.7E+02 0.0059 22.1 6.5 21 408-428 8-28 (113)
468 PF11768 DUF3312: Protein of u 25.8 8.3E+02 0.018 26.0 11.5 22 407-428 413-434 (545)
469 PRK09857 putative transposase; 25.4 5.8E+02 0.012 24.8 9.5 64 477-541 211-274 (292)
470 PF05944 Phage_term_smal: Phag 25.1 2.2E+02 0.0048 23.8 5.6 46 494-540 35-81 (132)
471 KOG0991 Replication factor C, 24.7 5.9E+02 0.013 23.9 13.1 136 337-482 135-282 (333)
472 PRK09857 putative transposase; 24.6 4.7E+02 0.01 25.4 8.8 65 441-506 210-274 (292)
473 PF15297 CKAP2_C: Cytoskeleton 24.3 7.2E+02 0.016 24.8 10.2 64 383-448 119-186 (353)
474 KOG4279 Serine/threonine prote 24.3 1E+03 0.022 26.5 11.8 26 335-360 204-229 (1226)
475 COG5108 RPO41 Mitochondrial DN 24.2 5.3E+02 0.011 28.1 9.2 90 231-323 33-130 (1117)
476 PF07678 A2M_comp: A-macroglob 23.7 4.6E+02 0.01 24.6 8.5 45 242-288 115-159 (246)
477 KOG0890 Protein kinase of the 23.5 1.7E+03 0.036 28.8 35.1 293 266-573 1388-1733(2382)
478 PF13934 ELYS: Nuclear pore co 23.5 5.9E+02 0.013 23.6 13.5 172 173-354 27-198 (226)
479 KOG3807 Predicted membrane pro 23.4 7.2E+02 0.016 24.5 12.3 58 305-362 284-341 (556)
480 COG4259 Uncharacterized protei 23.2 3.3E+02 0.0071 21.5 5.6 21 547-567 77-97 (121)
481 PRK13341 recombination factor 23.1 1.1E+03 0.024 26.5 18.7 166 382-561 169-352 (725)
482 PF10475 DUF2450: Protein of u 22.9 7E+02 0.015 24.1 9.9 51 303-360 105-155 (291)
483 PF12926 MOZART2: Mitotic-spin 22.7 3.6E+02 0.0077 20.6 7.5 41 177-217 29-69 (88)
484 KOG2223 Uncharacterized conser 22.6 7.4E+02 0.016 25.4 9.4 121 458-581 460-586 (586)
485 KOG3807 Predicted membrane pro 22.4 7.6E+02 0.016 24.3 11.6 55 267-323 281-338 (556)
486 PF06855 DUF1250: Protein of u 22.2 1.1E+02 0.0023 20.1 2.6 41 143-183 2-42 (46)
487 PF15241 Cylicin_N: Cylicin N- 22.0 78 0.0017 25.0 2.2 78 7-111 10-87 (110)
488 PF10255 Paf67: RNA polymerase 21.9 6.5E+02 0.014 25.8 9.3 112 142-253 47-191 (404)
489 PF02607 B12-binding_2: B12 bi 21.6 1.1E+02 0.0025 22.4 3.2 33 520-552 14-46 (79)
490 KOG1839 Uncharacterized protei 21.2 1.2E+03 0.026 27.7 12.0 152 414-565 944-1122(1236)
491 smart00638 LPD_N Lipoprotein N 20.5 1.1E+03 0.024 25.5 27.3 60 190-254 309-368 (574)
492 PRK09462 fur ferric uptake reg 20.5 4.8E+02 0.01 22.1 7.2 60 462-522 7-67 (148)
493 PF10155 DUF2363: Uncharacteri 20.4 5E+02 0.011 21.5 11.9 32 159-190 21-52 (126)
494 COG2178 Predicted RNA-binding 20.4 6.4E+02 0.014 22.7 9.8 108 419-535 20-149 (204)
495 cd02680 MIT_calpain7_2 MIT: do 20.2 2.1E+02 0.0045 21.2 4.0 18 518-535 17-34 (75)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-62 Score=538.26 Aligned_cols=482 Identities=21% Similarity=0.317 Sum_probs=420.5
Q ss_pred ccccCChhHHHHHHHHHhhcCCCCchhHhhhhcC----C-CCchhHH-----HHHHhcCCchHHHHHHHHhhhCCCCCCC
Q 007626 86 NYRCSNEFWFVKVVCTLLLRSSYLSDTCARYLCE----K-LSPLNSL-----EVIKRLDNPKLGLKFLEFSRVNLSLNHS 155 (595)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~-----~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (595)
....+|.+.....+..+. +.+.+++ +.+.|.. . +++..+. ..+...+....|+.+|..+.. ||
T Consensus 364 ~~~~~~~~~~~~~y~~l~-r~G~l~e-Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd 436 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLL-RDGRIKD-CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PT 436 (1060)
T ss_pred cCCCCCchHHHHHHHHHH-HCcCHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CC
Confidence 333444444555554443 4555444 4433322 2 2333322 234444667788888876642 89
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007626 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcCCHH
Q 007626 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS--FGCSPDIVTYNTLISGLCRVNEVA 313 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~ 313 (595)
|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999975 678999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 314 RGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERM 393 (595)
Q Consensus 314 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 393 (595)
+|.++|+.|...+ +.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus 597 eA~elf~~M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 597 RAKEVYQMIHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999998765 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh
Q 007626 394 LSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPF 473 (595)
Q Consensus 394 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 473 (595)
.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------------------cCCHHHHHHHH
Q 007626 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM-----------------------KGRMVEAISIF 530 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-----------------------~g~~~~A~~~~ 530 (595)
+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .+..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999865432 12346799999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007626 531 NKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 531 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
++|++.|+.||..||..++.++++.+..+.+..+++.+...+..+
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence 999999999999999999988877777777777777666554433
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-62 Score=534.63 Aligned_cols=453 Identities=19% Similarity=0.304 Sum_probs=428.0
Q ss_pred HHHHHHhc---CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 126 SLEVIKRL---DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI 202 (595)
Q Consensus 126 ~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (595)
...++.++ ++...|+++|+++....-.+++..+++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 34445444 778899999999987777788999999999999999999999999998874 99999999999999
Q ss_pred hcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007626 203 RAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFE 282 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 282 (595)
+.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007626 283 FFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFK-SEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
+|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|... .++.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999763 458899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007626 362 GIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFT 441 (595)
Q Consensus 362 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 441 (595)
|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007626 442 ILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhcCCCCCCc
Q 007626 522 RMVEAISIFNKMLRIGCAPDDITVNSLISCLLK----G-------------------GMPNEAFRIMQRASEDQNLQLPS 578 (595)
Q Consensus 522 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~ 578 (595)
++++|.+++++|.+.|+.||..+|+.|+..|.+ + +..++|..+|++|.+.+..|+..
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence 999999999999999999999999999876432 2 22467999999999999888765
Q ss_pred cccc
Q 007626 579 WKKA 582 (595)
Q Consensus 579 ~~~~ 582 (595)
....
T Consensus 849 T~~~ 852 (1060)
T PLN03218 849 VLSQ 852 (1060)
T ss_pred HHHH
Confidence 4443
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-58 Score=503.67 Aligned_cols=425 Identities=17% Similarity=0.272 Sum_probs=344.4
Q ss_pred hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007626 132 RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAK 211 (595)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 211 (595)
..++++.|+.+|.|+....++.||..+|+.++.++++.++++.+.+++..|.+.|+.||..+|+.++..|++.|++++|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 34778889999999887777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007626 212 GLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG 291 (595)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 291 (595)
++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|..+.+.+++..+.+.|
T Consensus 179 ~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 179 RLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 99999874 68889999999999999999999999999988888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007626 292 CSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFN 371 (595)
Q Consensus 292 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 371 (595)
+.||..+|+.|+++|++.|++++|.++|++|. .+|+.+|+.||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 88888888888888888888888888888774 3577888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 007626 372 VLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN 451 (595)
Q Consensus 372 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g 451 (595)
.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|.+ ||..+|+.|+.+|++.|
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcC
Confidence 88888888888888888888888888888888888888888888888888888877753 57777888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE-KRCKPDKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
+.++|.++|++|.+.|+.||..+|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 8888888888887777888888888888888888888888888888765 477777777777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 531 NKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 531 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
++| ++.|+..+|++|+.+|...|+++.|.++++++.+..
T Consensus 486 ~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 486 RRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 655 456666666666666555555555555555554433
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-57 Score=506.07 Aligned_cols=461 Identities=17% Similarity=0.248 Sum_probs=367.7
Q ss_pred hHHHHHHHHHhhcCCCCchhHhhhhcCCCCchhH--HHHHH---hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 007626 93 FWFVKVVCTLLLRSSYLSDTCARYLCEKLSPLNS--LEVIK---RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLC 167 (595)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~---~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~ 167 (595)
..+.+.+..++.+.+..+. +.+.|..-..|+.+ ..++. +.+..+.|+.+|..+.. .++.||..+|+.++++++
T Consensus 121 ~~~~n~li~~~~~~g~~~~-A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVH-AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred chHHHHHHHHHHhCCChHH-HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhC
Confidence 4456677777777777666 55555554333322 23333 33677788888876653 377888888888888888
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHH
Q 007626 168 EMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVY 247 (595)
Q Consensus 168 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (595)
+.+++..+.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ +|..+||++|.+|++.|++++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHH
Confidence 8888888888888888888888888889999999999999999999999974 577899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 248 MFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSE 327 (595)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (595)
+|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---- 350 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---- 350 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007626 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSS 407 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 407 (595)
.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.
T Consensus 351 -~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred -CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------
Q 007626 408 LIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK----------------------- 464 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----------------------- 464 (595)
||++|++.|++++|.++|++|.+. |..+|+.++.+|++.|+.++|..+|++|.
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 888888888888888888777542 33444444444444444444444444443
Q ss_pred -----------hCCC------------------------------CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007626 465 -----------WNDL------------------------------VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 465 -----------~~~~------------------------------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
+.|+ .+|..+||.+|.+|++.|+.++|.++|++|.+.|+
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3332 34455566677777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKML-RIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRA 568 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (595)
.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 7777777777777777777777777777777 4677777777777777777777777777777776
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-56 Score=486.62 Aligned_cols=436 Identities=17% Similarity=0.210 Sum_probs=407.7
Q ss_pred HHHHHHhc---CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 126 SLEVIKRL---DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI 202 (595)
Q Consensus 126 ~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (595)
...++..+ ++.+.+.+++..+. ..|+.||..+|+.|+..|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 126 ~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~ 200 (697)
T PLN03081 126 YDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLV 200 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHH
Confidence 33444444 67788888887665 45788999999999999999999999999999996 479999999999999
Q ss_pred hcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007626 203 RAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFE 282 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 282 (595)
+.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|..||..+|+.|+.+|++.|++++|.+
T Consensus 201 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007626 283 FFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCG 362 (595)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g 362 (595)
+|++|. .+|..+|+.+|.+|++.|++++|.++|++|...+ +.||..||+.++.+|++.|++++|.+++..|.+.|
T Consensus 281 vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 281 VFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 999996 4699999999999999999999999999998665 89999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007626 363 IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTI 442 (595)
Q Consensus 363 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 442 (595)
+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|+++|++|.+.|+.||..||+.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 431 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999999999974 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007626 443 LINALCKENRLNDARRFLKQLKW-NDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999976 699999999999999999999999999999876 57899999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007626 522 RMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 522 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
+++.|..+++++.+.+ +.+..+|..|++.|++.|++++|.++++.|.+.+....+++
T Consensus 509 ~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~ 565 (697)
T PLN03081 509 NLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565 (697)
T ss_pred CcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCe
Confidence 9999999999997543 33567999999999999999999999999999987655544
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-55 Score=494.09 Aligned_cols=468 Identities=16% Similarity=0.228 Sum_probs=387.6
Q ss_pred hhHHHHHHHHHhhcCCCCchhHhhhhcCCCCchhH--HHHHHhc---CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 007626 92 EFWFVKVVCTLLLRSSYLSDTCARYLCEKLSPLNS--LEVIKRL---DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSL 166 (595)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~ 166 (595)
+..+.+.+..++.+.+..++ +.+.|..-..|+.+ ..++..+ ++++.|+.+|.-+. ..++.||..+|+.+|.++
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~-A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVS-ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISAC 298 (857)
T ss_pred ccchHhHHHHHHhcCCCHHH-HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHH
Confidence 44566778888888887776 66666654444433 2444443 67788888887765 457889999999999999
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHH
Q 007626 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAV 246 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (595)
++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. +|..+||.++.+|++.|++++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999864 57788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 247 YMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKS 326 (595)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (595)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 451 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP--- 451 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007626 327 EFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 327 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
.+|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..+++
T Consensus 452 --~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 452 --EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred --CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 36888999999999999999999999999986 589999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 007626 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG 486 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (595)
+||++|++.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 8888888888888888887776 46778888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------
Q 007626 487 NVDEANVIVAEME-EKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL------------- 552 (595)
Q Consensus 487 ~~~~A~~l~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~------------- 552 (595)
++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++| ++.||..+|.+|+.+|
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8888888888887 5678888888888888888888888888888777 3567766666655554
Q ss_pred ---------------------HhcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007626 553 ---------------------LKGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 553 ---------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
...|++++|.++.+.|.+.+....|++
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~ 728 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGC 728 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCc
Confidence 456666677777777776666555543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.7e-26 Score=263.23 Aligned_cols=422 Identities=12% Similarity=0.032 Sum_probs=201.4
Q ss_pred CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007626 134 DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGL 213 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (595)
++.+.|+.++.-.... .+.+..+|..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.
T Consensus 445 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred CCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4444454444333221 22344455555555555555555555555555433 33444455555555555555555555
Q ss_pred HHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 007626 214 LSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCS 293 (595)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 293 (595)
++++.+.+ +.+..++..+...+.+.|+.++|..+++++.+.++ .+...+..++..|...|++++|..+++++.+.. +
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 55554432 23444555555555555555555555555544432 234444445555555555555555555554321 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007626 294 PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 294 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
.+..+|..+...+...|++++|.+.++.+.... +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 344445555555555555555555555544332 2233444445555555555555555555554432 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---------------------
Q 007626 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN--------------------- 432 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------------------- 432 (595)
+..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+...+
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHH
Confidence 444555555555555555444432 2233444444444444455555555554444432
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007626 433 -----------LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 433 -----------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.+.+..++..+...|...|++++|...|+++.+..+ .++.+++.+...+...|+ ++|+.+++++.+.
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 133444444444444445555555555554444432 234444444444544444 4455555444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 502 RCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 502 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
. +-+..++..+...+...|++++|..+++++++.+ +.+..++..++.++.+.|++++|.+++++++
T Consensus 833 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 A-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 1133344444444555555555555555555443 2244555555555555555555555555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.3e-26 Score=262.09 Aligned_cols=425 Identities=13% Similarity=0.071 Sum_probs=198.2
Q ss_pred cCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007626 133 LDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
.++.+.|..+|..+.... +.+...|..+...+...|++++|++.++.+.+.. +........++..+.+.|++++|..
T Consensus 376 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHH
Confidence 355666666665543321 1344455555555566666666666665555443 2222333344444455555555555
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007626 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
+++.+... .+.+..++..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|.+.|+++.+..
T Consensus 453 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 529 (899)
T TIGR02917 453 AAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID- 529 (899)
T ss_pred HHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 55554432 233444555555555555555555555555544332 233444445555555555555555555554332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007626 293 SPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV 372 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 372 (595)
+.+..++..+...+.+.|+.++|..+++++.... +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 606 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLM 606 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 2234444444555555555555555555544332 2233344444445555555555555555544332 333444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 007626 373 LIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR 452 (595)
Q Consensus 373 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 452 (595)
+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 5555555555555555555444432 2233444444444445555555555555444432 3334444444444444444
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 453 LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNK 532 (595)
Q Consensus 453 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (595)
+++|.++++.+.+... .+...+..+...+...|++++|.+.++++.+.+ |+..++..++.++.+.|++++|.+.+++
T Consensus 685 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 685 TESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444331 233344444444444444444444444444432 2223334444444444444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 533 MLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 533 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+.+.. +.+...+..++..|.+.|++++|.+.++++.+..
T Consensus 762 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 762 WLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 44432 3334444444444444444444444444444443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=4.7e-19 Score=203.90 Aligned_cols=398 Identities=10% Similarity=0.032 Sum_probs=264.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC-HHHH-----------
Q 007626 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS-TFMY----------- 229 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~----------- 229 (595)
....+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+...... ...+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3456677888888888888888765 55777888888888888888888888888776432211 1111
Q ss_pred -HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--
Q 007626 230 -NSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGL-- 306 (595)
Q Consensus 230 -~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-- 306 (595)
......+.+.|++++|+..|++.++..+ .+...+..+...+...|++++|.+.|++..+.. +.+...+..+...|
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 1234556678888888888888887654 456677778888888888888888888877542 22333443343333
Q ss_pred ----------------------------------------HhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 007626 307 ----------------------------------------CRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG 346 (595)
Q Consensus 307 ----------------------------------------~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 346 (595)
...|++++|.+.+++..... +.+...+..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 34455555555555554432 122334444555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHHcCC
Q 007626 347 KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV---------TFSSLIDGYCRNGQ 417 (595)
Q Consensus 347 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~li~~~~~~g~ 417 (595)
++++|...|+++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 5555555555554422 1122222223333344555555555554433221111110 11233455666777
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007626 418 LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAE 497 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 497 (595)
.++|..+++. .+.+...+..+...+.+.|++++|++.++.+.+..+ .+...+..++..|...|++++|.+.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777661 355667778889999999999999999999998764 3688999999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 498 MEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGC--AP---DDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 498 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
..+.. +.+...+..+..++...|++++|.+++++++.... +| +...+..+...+.+.|++++|++.++++....
T Consensus 663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 87652 23556677788889999999999999999987431 22 23567777889999999999999999998644
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=5.7e-19 Score=203.26 Aligned_cols=517 Identities=13% Similarity=0.045 Sum_probs=331.1
Q ss_pred ccccccCCCcchhhhhhccCCccccchHHHHHHHHHhhcCCCCCCCCCccccccCChhHHHHHHHHHhhcCCCCchhHhh
Q 007626 36 EAAANGVGLPMTLLFFTVRPSRVRASTIAAIAHFHGLANGGSRPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCAR 115 (595)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (595)
.|++....+++..|+-.+|--.-+.+...|...+.. ...-+|+.+-+......+..+.+-.++ +..
T Consensus 18 ~~~~~~~~~~~~~Ll~q~~~~~~~~~~d~a~~~l~k-------------l~~~~p~~p~~~~~~~~~~l~~g~~~~-A~~ 83 (1157)
T PRK11447 18 LPLAQAAPTAQQQLLEQVRLGEATHREDLVRQSLYR-------------LELIDPNNPDVIAARFRLLLRQGDSDG-AQK 83 (1157)
T ss_pred cccccccCCHHHHHHHHHHHHHhhCChHHHHHHHHH-------------HHccCCCCHHHHHHHHHHHHhCCCHHH-HHH
Confidence 334444444555555555555555555555555444 344455556666666666656555444 332
Q ss_pred hhcC--CCCchh--H-----------------H---HHHHhcCCchHHHHHHHHhhhCCCCCCCHHH-HHHHHHHHHHcC
Q 007626 116 YLCE--KLSPLN--S-----------------L---EVIKRLDNPKLGLKFLEFSRVNLSLNHSFKT-YNLVMRSLCEMG 170 (595)
Q Consensus 116 ~~~~--~~~~~~--~-----------------~---~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~-y~~li~~~~~~g 170 (595)
.+.. .+.|.. . . .++...++.+.|++.+....... +++... ...........|
T Consensus 84 ~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g 161 (1157)
T PRK11447 84 LLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPA 161 (1157)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCc
Confidence 2222 112211 1 0 12333466777777766554322 233211 111112223458
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCC------------------c---------
Q 007626 171 LHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEV------------------T--------- 223 (595)
Q Consensus 171 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------~--------- 223 (595)
++++|++.++++.+.. +.+...+..+...+...|+.++|+..++++..... .
T Consensus 162 ~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 162 QRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 8888888888888865 55677777888888888888888888887643210 0
Q ss_pred -----cCHH---------------------HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007626 224 -----MSTF---------------------MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEV 277 (595)
Q Consensus 224 -----~~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 277 (595)
|+.. ........+...|++++|+..|++.++..+ .+...+..+...+.+.|++
T Consensus 241 ~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 241 YLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 0000 000123455667888888888888887654 4677888888888888999
Q ss_pred HHHHHHHHHHhhCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 007626 278 KKAFEFFYDMGSFGCSP-DIVTY------------NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCK 344 (595)
Q Consensus 278 ~~A~~~~~~m~~~g~~p-~~~t~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 344 (595)
++|...|++..+..-.. ....+ ......+.+.|++++|.+.|+++.... +.+...+..+...+..
T Consensus 320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMA 397 (1157)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 99988888887543111 11111 122345667888888888888887654 3455667778888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHH------------------------------------------HHHHHHhcCC
Q 007626 345 LGKMDKATGIYNEMNSCGIKPSAVTFNV------------------------------------------LIDGFGKVGN 382 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~------------------------------------------ll~~~~~~g~ 382 (595)
.|++++|++.|+++.+.. +.+...+.. +...+...|+
T Consensus 398 ~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 888888888888887643 222222222 2233456788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007626 383 MVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQ 462 (595)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 462 (595)
+++|...+++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.
T Consensus 477 ~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 477 WAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 888888888887753 2255667778888888888888888888887653 33444443333334444444444444433
Q ss_pred HHhC---------------------------------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007626 463 LKWN---------------------------------------DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 463 ~~~~---------------------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
+... ..+.++..+..+...+.+.|++++|++.|++..+..
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~- 633 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE- 633 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 2110 123355667778888999999999999999999873
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007626 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
+.+...+..++..+...|++++|++.++...+.. +.+..++..+..++.+.|++++|.++++++++..+...+
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 3367888999999999999999999999887643 345667778888999999999999999999887654444
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2e-20 Score=191.91 Aligned_cols=295 Identities=14% Similarity=0.117 Sum_probs=148.7
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCC
Q 007626 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD---IVTYNTLISGLCRVNE 311 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~ 311 (595)
.+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 44556677777777777766543 3455666666677777777777777776665321111 1345556666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 007626 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSA----VTFNVLIDGFGKVGNMVSAE 387 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~ 387 (595)
+++|.++|+++.... +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 666666666665432 234556666666666666666666666666554321111 12333444445555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007626 388 YMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 388 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
..++++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555554432 112334444445555555555555555555443211112334444444444444444444444444332
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCC
Q 007626 468 LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM---KGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g 537 (595)
|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.+
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 23233344444444444444444444444433 3444444444444332 234444444444444433
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.5e-20 Score=191.13 Aligned_cols=308 Identities=14% Similarity=0.136 Sum_probs=258.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--CHhhHHHHHHHHHh
Q 007626 267 LIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSP--DVVTYTSVISGYCK 344 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~ 344 (595)
....+...|++++|...|.++.+.. +.+..++..+...+...|++++|..+++.+.......+ ....+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999763 34566889999999999999999999999886432211 12567888999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHH
Q 007626 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD----VVTFSSLIDGYCRNGQLNQ 420 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~ 420 (595)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|...++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998763 45678899999999999999999999999988653332 2245667788899999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007626 421 GLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 421 A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 4457788889999999999999999999998765443356789999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCC
Q 007626 501 KRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK---GGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 501 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
. .|+...+..++..+.+.|++++|..+++++++. .|+...+..++..+.. .|+.+++..+++++.+....++|
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6 467777789999999999999999999999875 6899899988887775 56999999999999998877887
Q ss_pred cccc
Q 007626 578 SWKK 581 (595)
Q Consensus 578 ~~~~ 581 (595)
.|..
T Consensus 354 ~~~c 357 (389)
T PRK11788 354 RYRC 357 (389)
T ss_pred CEEC
Confidence 7654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2e-18 Score=186.62 Aligned_cols=407 Identities=13% Similarity=0.009 Sum_probs=301.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007626 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..++...+.+ +.+..++..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4666788899999999999999998875 4678889999999999999999999999998865 456778888999999
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------------
Q 007626 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF--------------------------- 290 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------------- 290 (595)
..|++++|+..|......+...+.. ...++.-+........+...++.-...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998887766543222221 111111111110111111111100000
Q ss_pred CCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007626 291 GCSPDI-VTYNTLISG---LCRVNEVARGHELLKEVKFKSEFSP-DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP 365 (595)
Q Consensus 291 g~~p~~-~t~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 365 (595)
...++. ..+..+... ....+++++|.+.|+.....+...| ....|..+...+...|++++|+..|++..+.. +-
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 000000 001111111 1223678999999999886543334 45678888888999999999999999998863 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007626 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN 445 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 445 (595)
+...|..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 45688888899999999999999999998864 3467889999999999999999999999998874 556788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHh
Q 007626 446 ALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV------TFTILIIGHCM 519 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------~~~~li~~~~~ 519 (595)
.+.+.|++++|...+++..... +.++..|+.+...+...|++++|.+.|++..+.....+.. .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998765 3367889999999999999999999999988763221111 11222223344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 520 KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.|++++|..++++.++.. +.+...+..++..+.+.|++++|+++++++.+...
T Consensus 521 ~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 521 KQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 799999999999998864 44556788999999999999999999999987643
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-19 Score=177.59 Aligned_cols=402 Identities=14% Similarity=0.105 Sum_probs=324.9
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHH-HHH
Q 007626 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY-NSL 232 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 232 (595)
--.++|..+.+++-..|++++|+.+|+.+.+.. +-....|..+..++...|+.+.|.+.|.+..+.+ |+.... ..+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcch
Confidence 356789999999999999999999999999976 5677889999999999999999999999988753 554443 446
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 007626 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD-IVTYNTLISGLCRVNE 311 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 311 (595)
...+-..|++++|...|.+.++..+ --...|+.|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 6666678999999999998887543 24668999999999999999999999998854 454 5678889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007626 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRE 391 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 391 (595)
+++|...+.+..... +.....+..|...|...|..+.|++.|++..+.. +.-...|+.|..++-..|++.+|.+.+.
T Consensus 268 ~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 999999998887654 3346788888899999999999999999998853 2335789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007626 392 RMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPK 471 (595)
Q Consensus 392 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 471 (595)
+..... +....+.+.|...|...|.+++|..+|....+-. +--...++.|...|-+.|++++|...+++..... |+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--ch
Confidence 988863 3346688889999999999999999999887752 3345678889999999999999999999988654 54
Q ss_pred -HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007626 472 -PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD-DITVNSL 548 (595)
Q Consensus 472 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 548 (595)
...|+.+...|...|+.++|.+.+.+.+.. .|. ...++.|...|-..|++.+|++-++..++. +|| +..|-.+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNl 496 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNL 496 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHH
Confidence 678999999999999999999999998875 443 567888999999999999999999999875 454 3455556
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHhcC
Q 007626 549 ISCL---LKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 549 ~~~~---~~~g~~~~A~~~~~~~~~~~ 572 (595)
+.++ +.--++++-.+-+..+.++.
T Consensus 497 lh~lq~vcdw~D~d~~~~kl~sivrdq 523 (966)
T KOG4626|consen 497 LHCLQIVCDWTDYDKRMKKLVSIVRDQ 523 (966)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 5554 33445555444444444443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-19 Score=178.25 Aligned_cols=428 Identities=15% Similarity=0.085 Sum_probs=348.8
Q ss_pred CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007626 134 DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGL 213 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (595)
.+-..|++.-..+..+.+ .+....-.+-.++.+..+++....--....+.. +.-..+|..+...+-..|++++|+.+
T Consensus 62 gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccCC--Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHH
Confidence 455566665555533332 122233334456666677776665555555443 55678999999999999999999999
Q ss_pred HHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007626 214 LSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWT-FNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
++.+++.. +.....|..+..++...|+.+.|.+.|.+.++.. |+... .+.+-...-..|++++|...|.+..+.
T Consensus 139 y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~-- 213 (966)
T KOG4626|consen 139 YRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET-- 213 (966)
T ss_pred HHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--
Confidence 99998865 4467899999999999999999999999998854 55444 344555666789999999999988864
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 007626 293 SP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD-VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTF 370 (595)
Q Consensus 293 ~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 370 (595)
.| -...|+.|...+-..|++..|++-|++...-. |+ ...|-.|...|...+.+++|+..|.+..... +.....+
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~ 289 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAH 289 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhc
Confidence 34 35678899999999999999999999988644 44 4689999999999999999999999988753 3456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 007626 371 NVLIDGFGKVGNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK 449 (595)
Q Consensus 371 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~ 449 (595)
..+...|...|.++.|+..+++.++.. |+ ...|+.|..++-..|++.+|.+.+++..... +....+.+.|...|..
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYRE 366 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 889999999999999999999999864 43 5799999999999999999999999998873 5567788999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 007626 450 ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAIS 528 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 528 (595)
.|.+++|..+|....+.... -....+.|...|-..|++++|+.-+++.+.- .|+ ...|+.+...|-..|+.+.|++
T Consensus 367 ~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999999998865422 3667899999999999999999999999864 565 5689999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCccc
Q 007626 529 IFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWK 580 (595)
Q Consensus 529 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 580 (595)
.+.+++..+ +-=...++.|...|..+|+..+|+.-++.+++-.+.....+.
T Consensus 444 ~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 444 CYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 999999854 333578899999999999999999999999998776655443
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=5.2e-18 Score=186.80 Aligned_cols=404 Identities=10% Similarity=-0.021 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007626 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
...-.+.+....|+.++|++++....... +.+...+..+..++.+.|++++|..++++..+.. +.+...+..++..+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33334445555555555555555555422 3344445555555555555555555555554432 233444445555555
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007626 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHE 317 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 317 (595)
..|++++|+..+++..+..+ .+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|++
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 55555555555555555432 2333 5555555555555555555555555432 1133333444445555555555555
Q ss_pred HHHHHHhcCCCCCCH------hhHHHHHHHHH-----hcCCh---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHH
Q 007626 318 LLKEVKFKSEFSPDV------VTYTSVISGYC-----KLGKM---DKATGIYNEMNSC-GIKPSAV-TF----NVLIDGF 377 (595)
Q Consensus 318 ~~~~~~~~~~~~p~~------~~~~~ll~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-~~----~~ll~~~ 377 (595)
.++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. .-.|+.. .+ ...+.++
T Consensus 172 ~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 5544332 1111 01111111111 11122 4455555555532 1112111 11 0112233
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCCH
Q 007626 378 GKVGNMVSAEYMRERMLSFGYL-PDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP---NVYTFTILINALCKENRL 453 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~ 453 (595)
...|++++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+++....... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4445566666666665554321 221 11113445555666666666666554432100 122334444455556666
Q ss_pred HHHHHHHHHHHhCCC-----------CCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007626 454 NDARRFLKQLKWNDL-----------VPK---PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM 519 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 519 (595)
++|..+++.+....+ .|+ ...+..+...+...|++++|.++++++.... +-+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 666666665554321 112 1233445555556666666666666655542 2244455555555666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 520 KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.|++++|++.+++.++.. +.+...+..++..+.+.|++++|..+++++++..+
T Consensus 406 ~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 666666666666655532 23344445555555666666666666666655544
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=5.1e-18 Score=182.98 Aligned_cols=328 Identities=13% Similarity=0.104 Sum_probs=151.7
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007626 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
++..+.+.|++++|..+++...... +.+...+..++......|++++|...|+++.+..+ .+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Confidence 3334444444444444444444332 22233333333444444555555555555444332 233444444444445555
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007626 277 VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
+++|...|+++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 555555555444321 1223344444444555555555555554443322 1111122122 22444455555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHhhCC
Q 007626 357 EMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQ----GLKLCDEMKGKN 432 (595)
Q Consensus 357 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~ 432 (595)
.+.+....++...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++ |...|++.....
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 54443211222233333444555555555555555555432 2234444555555555555553 455555555442
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 007626 433 LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV-TFT 511 (595)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~ 511 (595)
+.+...+..+...+.+.|++++|...+++.....+. +...+..+...+.+.|++++|...++++.+. .|+.. .+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 334455555555555556666666555555554322 3444555555555566666666666555544 23322 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 512 ILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+..++...|+.++|...|++..+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234445556666666666665554
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=2.3e-17 Score=178.00 Aligned_cols=333 Identities=13% Similarity=0.079 Sum_probs=245.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007626 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
...++..+.+.|++++|..+++...... +-+...+..++.+....|++++|...++++.+.. +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3445667778888888888888887765 4455666677777778888888888888887764 4466777888888888
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007626 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
.|++++|...|++..+..+ .+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 8888888888888887643 4567778888888888888888888887765432 223333333 346778888888888
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 007626 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVS----AEYMRERML 394 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----A~~~~~~m~ 394 (595)
++.+..... .++...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++ |...+++..
T Consensus 200 ~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 200 ARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 888765431 2233444555677788888888888888888764 4456677778888888888875 788888887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 007626 395 SFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFM 474 (595)
Q Consensus 395 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 474 (595)
+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...++.+...+.. +...
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~ 354 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKW 354 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHH
Confidence 753 3356678888888888888888888888887764 445667777888888888888888888888766432 2334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007626 475 YNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+..+..++...|+.++|...|++..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444567788888888888888888766
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=4.5e-16 Score=171.81 Aligned_cols=234 Identities=9% Similarity=-0.038 Sum_probs=173.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007626 331 DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLID 410 (595)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 410 (595)
+...|..+..++.. ++.++|+..|.+.... .|+......+...+...|++++|...++++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 34455555555554 6667777767666654 355444444455556788888888888887654 344455666677
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 007626 411 GYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDE 490 (595)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (595)
.+.+.|+.++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. |+...|..+...+.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 7888888888888888887764 3344444444444556689999999998888665 467788888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
|...+++..+.. +.+...++.+...+...|++++|+..+++.++.. +-+...+..+..++...|++++|+..++++++
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988874 2356677888888889999999999999988864 55677888999999999999999999999987
Q ss_pred cCCC
Q 007626 571 DQNL 574 (595)
Q Consensus 571 ~~~~ 574 (595)
..+.
T Consensus 706 l~P~ 709 (987)
T PRK09782 706 DIDN 709 (987)
T ss_pred cCCC
Confidence 7653
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.9e-16 Score=171.27 Aligned_cols=390 Identities=12% Similarity=-0.003 Sum_probs=288.7
Q ss_pred cCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007626 133 LDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
.++.+.|+..|.-+.. ..|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..+|...|++++|+.
T Consensus 140 ~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3677888888876653 33677899999999999999999999999999876 6678899999999999999999998
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-------------------------------CC-
Q 007626 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ-------------------------------PD- 260 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------------------------~~- 260 (595)
.|..+...+...+.. ...++..+... .+........+..+. ++
T Consensus 216 ~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 216 DLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 887664432111221 11111111111 111111111111100 00
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhH
Q 007626 261 TWTFNILIQG---LSRIGEVKKAFEFFYDMGSFG-CSP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTY 335 (595)
Q Consensus 261 ~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 335 (595)
...+..+... ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..+++..... +.+...|
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~ 368 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSY 368 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHH
Confidence 0000111100 022367899999999998754 223 45678888888999999999999999988654 2335688
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007626 336 TSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN 415 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 415 (595)
..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHC
Confidence 889999999999999999999998864 4567888999999999999999999999999864 33567788888999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHHcCCHH
Q 007626 416 GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPF------MYNPVIDGFCKAGNVD 489 (595)
Q Consensus 416 g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~ 489 (595)
|++++|+..|++..+.. +.+...++.+...+...|++++|.+.+++..+.....+.. .++..+..+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999998763 5568899999999999999999999999988765332111 1222233344569999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007626 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
+|.+++++..+.. +.+...+..+...+.+.|++++|+.+|++..+..
T Consensus 526 eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 526 EAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999988764 2345678899999999999999999999998753
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.9e-16 Score=174.58 Aligned_cols=418 Identities=11% Similarity=0.030 Sum_probs=313.4
Q ss_pred CCCchhHH---HHHHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007626 120 KLSPLNSL---EVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEF 196 (595)
Q Consensus 120 ~~~~~~~~---~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 196 (595)
.++|..|. +|....++.+.|+..+.-... .-+.+...+..+...+...|++++|..++++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45666664 555556888888876655543 223566679999999999999999999999998875 667778889
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007626 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
++..+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+ .+...+..+...+...|.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998764 45666 88899999999999999999999999765 366677778888999999
Q ss_pred HHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhcCCCCCCHh-hH----HH
Q 007626 277 VKKAFEFFYDMGSFGCSPDI------VTYNTLISGLC-----RVNEV---ARGHELLKEVKFKSEFSPDVV-TY----TS 337 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~------~t~~~li~~~~-----~~g~~---~~A~~~~~~~~~~~~~~p~~~-~~----~~ 337 (595)
.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.......|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987663 3331 11122222222 12234 778888888875422233321 11 11
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 007626 338 VISGYCKLGKMDKATGIYNEMNSCGIK-PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP---DVVTFSSLIDGYC 413 (595)
Q Consensus 338 ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~ 413 (595)
.+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 134456779999999999999987522 322 22235778999999999999999988653111 1345666777889
Q ss_pred HcCCHHHHHHHHHHHhhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 007626 414 RNGQLNQGLKLCDEMKGKNL-----------SPN---VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVI 479 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~-----------~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 479 (595)
..|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++....+ .+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 99999999999999986521 123 23556777888999999999999999988764 4688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 480 DGFCKAGNVDEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
..+...|++++|++.+++..+.. |+ ...+...+..+...|++++|+.+++++++. .|+......+-..+
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999999999999863 54 566677777889999999999999999985 46655444444433
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=9.5e-16 Score=165.87 Aligned_cols=432 Identities=10% Similarity=-0.002 Sum_probs=312.7
Q ss_pred CCchHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007626 134 DNPKLGLKFLEFSRVNLSLNHS-FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
++...|+..+.-+....+ .+ ...+ .++..+...|+.++|+..+++..... +........+...+...|++++|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGP--LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred CCHHHHHHHHHHHHhhCc--cchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555666666665543322 22 1233 78888889999999999999988322 3344444455678888899999999
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007626 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
+|+++.+.. +.+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|++.++++.+..
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 999998875 4457777788888999999999999999988753 555556555555555666667999999998763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhH------HHHHHHH---H--hcCC---hhHHHHHHHHH
Q 007626 293 SPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTY------TSVISGY---C--KLGK---MDKATGIYNEM 358 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~------~~ll~~~---~--~~g~---~~~A~~l~~~m 358 (595)
+-+...+..+...+.+.|-...|.++..+-..- +.+....+ ..++..- . ...+ .+.|+.-++.+
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 346777788888899999988888877664321 12221111 1111110 0 1122 33455555555
Q ss_pred HHC-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 007626 359 NSC-GIKPSA-VTF----NVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN 432 (595)
Q Consensus 359 ~~~-g~~p~~-~~~----~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 432 (595)
... +-.|.. ..| .-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..++..+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 541 112322 222 23456788999999999999999988866555688899999999999999999999986643
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HhhHHHHHHHHHHcCCHHHHHH
Q 007626 433 -----LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL-----------VPK---PFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 433 -----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~ 493 (595)
.+++......|.-+|...+++++|..+++.+.+..+ .|+ ...+..++..+...|++.+|.+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 233444567899999999999999999999987422 122 2244556778889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 494 IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 494 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.++++.... +-|......+...+...|.+.+|++.++.+.... +-+..+....+.++...|++++|..+.+...+..+
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999998764 4488888999999999999999999997776653 55567778889999999999999999999888776
Q ss_pred CCCC
Q 007626 574 LQLP 577 (595)
Q Consensus 574 ~~~~ 577 (595)
.+..
T Consensus 516 e~~~ 519 (822)
T PRK14574 516 EDIP 519 (822)
T ss_pred Cchh
Confidence 5543
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=9.5e-15 Score=161.40 Aligned_cols=425 Identities=11% Similarity=-0.000 Sum_probs=247.6
Q ss_pred hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHh
Q 007626 132 RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSS--------CIR 203 (595)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--------~~~ 203 (595)
.+++.+.|+...+-+....+ -|...+..+. .+ +++++|..+++++.+.. +-+..++..+... |.+
T Consensus 90 ~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La-~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q 162 (987)
T PRK09782 90 HFGHDDRARLLLEDQLKRHP--GDARLERSLA-AI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQ 162 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCc--ccHHHHHHHH-Hh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhh
Confidence 33666666666555443222 3344444332 22 77777777777777764 4455555555554 544
Q ss_pred cCChHHHHHHHHhccCCCCccCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHH
Q 007626 204 AGKCDAAKGLLSQFRPGEVTMSTFMYNSL-LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR-IGEVKKAF 281 (595)
Q Consensus 204 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~ 281 (595)
. ++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.++ .+......|..+|.. .++ +++.
T Consensus 163 ~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~ 236 (987)
T PRK09782 163 L---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLL 236 (987)
T ss_pred H---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHH
Confidence 4 33333333 2222223344444444 7777788888888888888877764 345556666667776 356 6666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH-----------------------
Q 007626 282 EFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV----------------------- 338 (595)
Q Consensus 282 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l----------------------- 338 (595)
.+++. .++-+......+...|.+.|+.++|.++++++.....-.|+..+|--+
T Consensus 237 al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 237 ALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 66543 223567777788888888888888888888876543222333332211
Q ss_pred -------HHHHHhcCC---------------------------------------------------------------h
Q 007626 339 -------ISGYCKLGK---------------------------------------------------------------M 348 (595)
Q Consensus 339 -------l~~~~~~g~---------------------------------------------------------------~ 348 (595)
+..+.+.+. .
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH
Confidence 111222222 2
Q ss_pred hHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhc----------------------------------------------
Q 007626 349 DKATGIYNEMNSC-G-IKPSAVTFNVLIDGFGKV---------------------------------------------- 380 (595)
Q Consensus 349 ~~A~~l~~~m~~~-g-~~p~~~~~~~ll~~~~~~---------------------------------------------- 380 (595)
++|.++|+..... + -.++.....-++..|.+.
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 2222222222210 0 000011111222222222
Q ss_pred -----------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007626 381 -----------------GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTIL 443 (595)
Q Consensus 381 -----------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 443 (595)
++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+
T Consensus 473 ~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 2333344433333332 233322222333445677777777777776543 3444455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007626 444 INALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM 523 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 523 (595)
..++.+.|++++|...++...+.+. .+...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 6677777888888888877776542 23333333444444558888888888888866 46777888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccc
Q 007626 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKK 581 (595)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 581 (595)
++|+..+++.++.. +.+...+..+..++...|++++|++.++++++..+.....+..
T Consensus 626 deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 626 PAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999988865 5566778888888999999999999999998887765554443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.7e-13 Score=147.03 Aligned_cols=412 Identities=11% Similarity=0.055 Sum_probs=303.5
Q ss_pred HHHHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 007626 128 EVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKC 207 (595)
Q Consensus 128 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (595)
.++...++...|+.+++-.. .+-+........+...+...|++++|+++|+++.+.. +.++..+..++..+...++.
T Consensus 76 ~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCH
Confidence 34445588888888777665 2223444455555778999999999999999999986 66678888889999999999
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 208 DAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 208 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
++|++.++++.... |+...+..++..+...++..+|++.++++.+..+ .+...+..++.++.+.|-...|.++..+-
T Consensus 153 ~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 153 GVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 99999999998863 4555555555555456677679999999999864 47788899999999999999999887754
Q ss_pred hhCCCCCCHHHH------HHHHHHH-----HhcC---CHHHHHHHHHHHHhcCCCCCC-HhhH----HHHHHHHHhcCCh
Q 007626 288 GSFGCSPDIVTY------NTLISGL-----CRVN---EVARGHELLKEVKFKSEFSPD-VVTY----TSVISGYCKLGKM 348 (595)
Q Consensus 288 ~~~g~~p~~~t~------~~li~~~-----~~~g---~~~~A~~~~~~~~~~~~~~p~-~~~~----~~ll~~~~~~g~~ 348 (595)
.+. +.+...-. ..+++.- .... -.+.|+.-++.+...-+..|. ...| .-.+-++...|++
T Consensus 230 p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 230 PNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred ccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 321 11111111 1111110 0111 245566666666543222232 2222 2345678899999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007626 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG-----YLPDVVTFSSLIDGYCRNGQLNQGLK 423 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~ 423 (595)
.++++.|+.|...|.+....+-..+.++|...+.+++|..+++.+.... ..++......|.-+|...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999998876666788899999999999999999999997643 12344446788999999999999999
Q ss_pred HHHHHhhCCC-----------CC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 007626 424 LCDEMKGKNL-----------SP--NV-YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVD 489 (595)
Q Consensus 424 l~~~m~~~~~-----------~p--~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (595)
+++.+.+... .| |- ..+..++..+...|++.+|++.++.+....+ -|......+.+.+...|.+.
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~ 467 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPR 467 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHH
Confidence 9999987411 12 21 2344567778899999999999999987764 48999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007626 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLIS 550 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 550 (595)
+|.+.++...... +-+..+....+.++...|++++|..+.+...+. .|+......|-.
T Consensus 468 ~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 468 KAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred HHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 9999997777652 335666778888889999999999999999874 455554444443
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=9.6e-14 Score=131.45 Aligned_cols=411 Identities=17% Similarity=0.147 Sum_probs=297.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHH-HHHHHhccCCC----------
Q 007626 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAG--KCDAA-KGLLSQFRPGE---------- 221 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A-~~~~~~~~~~~---------- 221 (595)
.+++=|.|+.. ..+|.+.++.-+|+.|...|++.+...-..|++..+-.+ ++--| .+.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34455666544 568899999999999999998888877666665433222 21111 11222222211
Q ss_pred ---------CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007626 222 ---------VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 222 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
.+-+..+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-..+ .+++.+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 1345678999999999999999999999998887778899999999876543322 678899998889
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhH-HHHHHHHHHH----CCC
Q 007626 293 SPDIVTYNTLISGLCRVNEVARG----HELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDK-ATGIYNEMNS----CGI 363 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~-A~~l~~~m~~----~g~ 363 (595)
.||..|+|+++.+..+.|+++.| .+++.+|++-+ +.|...+|..+|..+++.++..+ |..++.++.. ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 99999999999999999987654 56677787666 89999999999999999888754 4445555433 222
Q ss_pred C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 007626 364 K----PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG----YLPD---VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN 432 (595)
Q Consensus 364 ~----p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 432 (595)
+ -|...|...+..|....+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|+-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2 245567778888889999999988876654321 2222 2356778888899999999999999999888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CH--------HH-----HHHHH---
Q 007626 433 LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG-NV--------DE-----ANVIV--- 495 (595)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~l~--- 495 (595)
+-|+..+...++.+....+.++-..++|..++..|...+......++..+++.+ +. .. |..++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999888775555555555555555544 11 11 11111
Q ss_pred ----HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 496 ----AEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG----CAPDDITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 496 ----~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
.+|... .......+.....+.+.|+.++|.++|.-+.+.+ ..|......-+++.-........|...++-
T Consensus 509 e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 122222 3345566777778899999999999999886643 244455566777788888999999999999
Q ss_pred HHhcCC
Q 007626 568 ASEDQN 573 (595)
Q Consensus 568 ~~~~~~ 573 (595)
|.+...
T Consensus 587 a~~~n~ 592 (625)
T KOG4422|consen 587 ASAFNL 592 (625)
T ss_pred HHHcCc
Confidence 976554
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7e-14 Score=145.19 Aligned_cols=418 Identities=13% Similarity=0.063 Sum_probs=256.4
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHH
Q 007626 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGH--LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNS 231 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 231 (595)
.++.+.+.|.+.|.-.|++..++.+...+..... ..-...|..+.++|-..|++++|...|.+..+..-...+..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 5666777777777777788877777777766321 12234577777777777888888777777765432222334445
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhC-----------------
Q 007626 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG----EVKKAFEFFYDMGSF----------------- 290 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~----------------- 290 (595)
|...+.+.|+.+.+...|+.+.+..+ .+..+..+|...|...+ ..+.|..++.+..+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 67777777777777777777766543 34455555555555543 334444444444332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCH------hhHHHHHHHH
Q 007626 291 --------------------GCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSE--FSPDV------VTYTSVISGY 342 (595)
Q Consensus 291 --------------------g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~------~~~~~ll~~~ 342 (595)
+..+.+...|.+...+...|++++|...|+.....-. ..+|. .+--.+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 2223333444444444444444444444444332200 01111 1112222333
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007626 343 CKLGKMDKATGIYNEMNSCGIKPSAV-TFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQG 421 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 421 (595)
-..++.+.|.+.|..+.... |+.. .|-.++...-..+...+|...+....... ..++..+..+...+.....+..|
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccc
Confidence 33344444444444444431 2222 12222212222244455555555544422 23444555555566666666666
Q ss_pred HHHHHHHhhC-CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007626 422 LKLCDEMKGK-NLSPNVYTFTILINALCK------------ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 422 ~~l~~~m~~~-~~~p~~~~~~~ll~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.+-|+...+. ...+|.++...|.+.|.. .+..++|.++|.++.+.++. |...-|.+.-.++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCc
Confidence 6555544333 123577777777775543 34578899999999888754 788889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 489 DEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR-IGCAPDDITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
.+|..+|.+..+... -+..+|-.+..+|...|++..|+++|+...+ .....+......|..++.+.|++.+|.+.+..
T Consensus 663 ~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999998743 2556788999999999999999999999887 34456778889999999999999999999999
Q ss_pred HHhcCCCCCC
Q 007626 568 ASEDQNLQLP 577 (595)
Q Consensus 568 ~~~~~~~~~~ 577 (595)
+....+....
T Consensus 742 a~~~~p~~~~ 751 (1018)
T KOG2002|consen 742 ARHLAPSNTS 751 (1018)
T ss_pred HHHhCCccch
Confidence 9887765544
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=6.7e-14 Score=132.48 Aligned_cols=363 Identities=14% Similarity=0.169 Sum_probs=241.0
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007626 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
+.+..+|..||.++|+--..+.|.++|++..+...+.+..+||.+|.+-+-.. ..+++.+|....+.||..++|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 45677899999999999889999999998888766888889998888755333 26788888888888999999999
Q ss_pred HHHHHHcCCHhHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHh----hCCCCC----CHHHH
Q 007626 233 LNALVKQNNADEA----VYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKK-AFEFFYDMG----SFGCSP----DIVTY 299 (595)
Q Consensus 233 i~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~----~~g~~p----~~~t~ 299 (595)
+.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++. ...++| |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999999977654 5677788888999999999999998888887644 333333332 222333 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007626 300 NTLISGLCRVNEVARGHELLKEVKFKSE---FSPD---VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~p~---~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
...+..|.+..+.+-|.++..-+....+ +.|+ ...|..+....|+....+.-..+|+.|+-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 6677777788888888887766654332 2233 234666777888888888888999998877677888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CC
Q 007626 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE-NR 452 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~-g~ 452 (595)
+++....+.++-.-+++.+++..|.......-. +++..|......|+...-..+-.+..+. -+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 888888888888888888888766333222222 2333333333333222111111111110 11
Q ss_pred HHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHH
Q 007626 453 LNDAR-RFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC----KPDKVTFTILIIGHCMKGRMVEAI 527 (595)
Q Consensus 453 ~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~ 527 (595)
+.++. .--.++.+.. ..+...+.++-.+.+.|..++|.+++.-+.+++- .|......-++..-.+.+....|.
T Consensus 504 ~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 22221 1222333333 3345667777777788888888888877755432 223333334555566677788888
Q ss_pred HHHHHHHHCC
Q 007626 528 SIFNKMLRIG 537 (595)
Q Consensus 528 ~~~~~m~~~g 537 (595)
..++-|...+
T Consensus 582 ~~lQ~a~~~n 591 (625)
T KOG4422|consen 582 EVLQLASAFN 591 (625)
T ss_pred HHHHHHHHcC
Confidence 8888776654
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3e-13 Score=140.56 Aligned_cols=489 Identities=11% Similarity=0.016 Sum_probs=310.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCccccccCChhHHHHHHHHHhhcCCCCchhHhhhhcC------CCCchhH---HHHHHh
Q 007626 62 TIAAIAHFHGLANGGSRPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCARYLCE------KLSPLNS---LEVIKR 132 (595)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~l~~ 132 (595)
...|.++|+..- .-+++|-+.+.--.|..+.+.++... +.++.. ...|+.- ..-+..
T Consensus 146 ~~~A~a~F~~Vl------------~~sp~Nil~LlGkA~i~ynkkdY~~a--l~yyk~al~inp~~~aD~rIgig~Cf~k 211 (1018)
T KOG2002|consen 146 MDDADAQFHFVL------------KQSPDNILALLGKARIAYNKKDYRGA--LKYYKKALRINPACKADVRIGIGHCFWK 211 (1018)
T ss_pred HHHHHHHHHHHH------------hhCCcchHHHHHHHHHHhccccHHHH--HHHHHHHHhcCcccCCCccchhhhHHHh
Confidence 445667776622 22445566677777777777665444 333322 2222221 123344
Q ss_pred cCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 007626 133 LDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCE---MGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA 209 (595)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (595)
++..+.|+.-|.-+..-. +.++.++-.|...-.. ...+..++.++...-... +-++...+.|...|.-.|++..
T Consensus 212 l~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred ccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHH
Confidence 566666655443332211 1344455444433333 334567777777776655 6678899999999999999999
Q ss_pred HHHHHHhccCCCC--ccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 210 AKGLLSQFRPGEV--TMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 210 A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
+..+...+..... ..-...|-.+..+|-..|+++.|...|.+..+....--+..+--+...|.+.|+++.+...|+..
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 9999998876431 12234577899999999999999999999887654322455667889999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH----H
Q 007626 288 GSFGCSPDIVTYNTLISGLCRVN----EVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEM----N 359 (595)
Q Consensus 288 ~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m----~ 359 (595)
.+.. +-+..|...|...|...+ ..+.|..++....... +.|...|-.+...+-...-+. ++..|... .
T Consensus 369 ~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 369 LKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILE 444 (1018)
T ss_pred HHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHH
Confidence 8642 445677777777776654 4677777777766543 456666666666555443333 35555443 3
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007626 360 SCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF---GYLPDV------VTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 360 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
..+..+.....|.+.......|++++|...|...... ...+|. .+--.+...+-..++.+.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444566677777777777777777777777666543 111222 1111233333444455555555554443
Q ss_pred CC---------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHH
Q 007626 431 KN---------------------------------LSPNVYTFTILINALCKENRLNDARRFLKQLKWN-DLVPKPFMYN 476 (595)
Q Consensus 431 ~~---------------------------------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~ 476 (595)
.. ...++..++.+...+.+...+..|.+-|..+... ...+|+.+.-
T Consensus 525 ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 525 EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 31 1223334444444555555555555544443322 1124555555
Q ss_pred HHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007626 477 PVIDGFCK------------AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDIT 544 (595)
Q Consensus 477 ~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 544 (595)
+|...|.. .+..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+.. .....+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCce
Confidence 56554432 245778899999888764 3366777888888899999999999999998864 345668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 545 VNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
|..+.++|...|++-.|++.|+...++..
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999887765
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1.4e-14 Score=137.76 Aligned_cols=424 Identities=15% Similarity=0.104 Sum_probs=274.1
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHhccCCC----CccCHHHH
Q 007626 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIE-FFVSSCIRAGKCDAAKGLLSQFRPGE----VTMSTFMY 229 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 229 (595)
+..+...|..-|..+....+|+..|+-+.+...-|+.-.+. .+...+.+.+.+.+|++.|+.....- -.....+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 44455566677888888899999999988877667665443 34456778888999999888776532 12234456
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH------------
Q 007626 230 NSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIV------------ 297 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------ 297 (595)
+.+...+.+.|++++|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|...-..||..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 77777888899999999999998775 4777766666777777888898888898886543333322
Q ss_pred HHHHHHH-----HHHhcCCHHHHHHHH---HHHHhcCCCCCCHh---------------------hHHHHHHHHHhcCCh
Q 007626 298 TYNTLIS-----GLCRVNEVARGHELL---KEVKFKSEFSPDVV---------------------TYTSVISGYCKLGKM 348 (595)
Q Consensus 298 t~~~li~-----~~~~~g~~~~A~~~~---~~~~~~~~~~p~~~---------------------~~~~ll~~~~~~g~~ 348 (595)
..+..|. -.-+.++ ..|++.. -.+.. .-+.||-. .--.-..-|.+.|++
T Consensus 358 ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 2211111 1111111 1111111 00000 00111100 000112345566666
Q ss_pred hHHHHHHHHHHHCCCCC------------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 349 DKATGIYNEMNSCGIKP------------------------------------SAVTFNVLIDGFGKVGNMVSAEYMRER 392 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p------------------------------------~~~~~~~ll~~~~~~g~~~~A~~~~~~ 392 (595)
+.|+++++-+...+-+. +......-.+.....|++++|...+++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 66666665554322111 111111111222445778888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 007626 393 MLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKP 472 (595)
Q Consensus 393 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 472 (595)
.....-......|| +.-.+-..|++++|++.|-++..- +..+..+...+...|....+...|++++-+.... ++.|+
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 87653222222333 233456788999999988877543 2446777788888888888999999988776543 34468
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 007626 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLIS-C 551 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~-~ 551 (595)
.++..|.+.|-+.|+-..|.+.+-+--.. ++-+..+...|..-|....-++.|+.+|++..- +.|+..-|..++. +
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH
Confidence 88999999999999988888776554433 455777888888888888889999999998754 6899999887765 5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 007626 552 LLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRTN 588 (595)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (595)
+.+.|+++.|.++++....+.+.+.+.+..++.+..+
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 5788999999999999999998888877777665443
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=3.1e-11 Score=120.47 Aligned_cols=417 Identities=11% Similarity=0.087 Sum_probs=263.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCcc--C
Q 007626 152 LNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMR----SDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTM--S 225 (595)
Q Consensus 152 ~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 225 (595)
++.+...|.+-...=-.+|+.+...+++++-. ..|+..+...|-.=...|-..|..-.+..+....+..|+.. -
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 33455555554444455555555555554422 25555565566555556666666666666655555444422 2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007626 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 305 (595)
..+|+.-...|.+.+.++-|..+|...++..+ .+...|...+..--..|..++...+|++.... ++-....|-...+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 34555566666666677777777776666543 35556666665555667777777777777653 33345555556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007626 306 LCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVS 385 (595)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 385 (595)
+-..|++..|..++....... +.+...|-.-+..-..+..++.|..+|.+.... .|+...|.--++.---.++.++
T Consensus 594 ~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 667777777777777776543 234566777777777777788888887777664 3666666666666666677788
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007626 386 AEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 386 A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (595)
|.+++++.++. -|+ ...|-.+.+.+-+.++++.|.+.|..-.+. +|..+..|..|...=-+.|.+-.|..++++..
T Consensus 670 A~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 670 ALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 88877777764 244 345666667777777777777777666544 44455566666666667778888888888877
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----------------------------CCCCCHHHHHHHHH
Q 007626 465 WNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----------------------------RCKPDKVTFTILII 515 (595)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----------------------------g~~p~~~~~~~li~ 515 (595)
-.++. +...|-..|+.-.+.|+.+.|..+..+.+.. .+.-|.+..-.+..
T Consensus 747 lkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 747 LKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred hcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 77754 6778888888888888888887776665543 12223444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007626 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
.+....+++.|.++|++.++.+ +....+|.-+...+.+.|.-++-.+++.+.....+.--+.|
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 5555666677777777766644 44456666666666677766666666666665554444444
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=5.9e-12 Score=130.28 Aligned_cols=372 Identities=12% Similarity=0.054 Sum_probs=255.5
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007626 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
|.+...-...+.+...|++++|..++.+.++.. +.....|.+|...|-..|+.+++...+-.+...+ +-|...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 334444445556666688899999888888876 6677888888888888888888888776665544 44667888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhc
Q 007626 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIV----TYNTLISGLCRV 309 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~li~~~~~~ 309 (595)
....+.|.++.|.-.|.+.++..+ ++...+---+..|-+.|+...|..-|.++....-+.|.. +.-..++.+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 888888888899888888888764 455555556677888888888888888887653211222 223345566667
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-------------------------
Q 007626 310 NEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIK------------------------- 364 (595)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~------------------------- 364 (595)
++-+.|.+.++.......-.-+...++.++..|.+...++.|......+......
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 7778888888877664433445566788888888888888888888777652111
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007626 365 --PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG--YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTF 440 (595)
Q Consensus 365 --p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 440 (595)
++...+ .++-++......+....+...+.+.. ..-+...|.-+..+|...|++.+|+.+|..+.....--+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 222221 12223444455555555555555554 2335567888888888888888888888888877555567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHHHH
Q 007626 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE--------KRCKPDKVTFTI 512 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~~~~~ 512 (595)
..+..+|...|..++|.+.++.+....+ .+...--.|...+.+.|+.++|.+.++.+.. .+..|+....-.
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 8888888888888888888888886653 2455666677778888888888888888542 223444444444
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 007626 513 LIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~ 530 (595)
....+...|+.++-+.+.
T Consensus 532 r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 555566677666644433
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=2.9e-10 Score=113.62 Aligned_cols=411 Identities=10% Similarity=-0.009 Sum_probs=327.4
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhc----cCCCCccCHHHHHHHHHHHHHcC
Q 007626 165 SLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF----RPGEVTMSTFMYNSLLNALVKQN 240 (595)
Q Consensus 165 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g 240 (595)
+|.+..-|+.|..++....+. ++-+..+|......=-..|+.+...+++++- ...|+..+...|-.=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 444555678888888888774 4677788887777777888888888877654 45678888888888888888888
Q ss_pred CHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007626 241 NADEAVYMFKEYFRLYSQP--DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
..-.+..+....+..|+.. -..||+.-...|.+.+.++-|..+|...++. ++-+...|......--..|..++...+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 8888888888888877643 2457888888899999999999999888753 344566777777666678999999999
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007626 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY 398 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 398 (595)
|++.... ++.....|-.....+-..|+...|..++....+.. +.+...|-.-+..-.....++.|..+|.+....
T Consensus 573 lqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 573 LQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 9998865 34556677777888888999999999999998875 447778888889999999999999999998875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 007626 399 LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPV 478 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 478 (595)
.|+...|.--+....-.++.++|++++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+.- +-....|-.|
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHH
Confidence 478888888888888889999999999998876 34445678888899999999999999887755432 2245578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------
Q 007626 479 IDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI---------------------- 536 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------- 536 (595)
...--+.|.+-.|..++++..-++. -+...|-..|..-.+.|..+.|..++.++++.
T Consensus 726 akleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 8888889999999999999987753 37888999999999999999999888776542
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccccccc
Q 007626 537 -------GCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPL 585 (595)
Q Consensus 537 -------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 585 (595)
.+.-|+.....+...+....+++.|+++|+++++.++..-+.|.....+
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 2334555666777888888999999999999999988777766554433
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=7.9e-15 Score=142.72 Aligned_cols=263 Identities=18% Similarity=0.170 Sum_probs=106.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007626 301 TLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKV 380 (595)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 380 (595)
.+...+.+.|++++|+++++........+.|...|..+.......++++.|.+.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 446667777888888888854332210123444555566666677888888888888877652 245556666665 688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007626 381 GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN-LSPNVYTFTILINALCKENRLNDARRF 459 (595)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (595)
+++++|..+++...+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 456667778888888888888888888876432 356777788888888889999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007626 460 LKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCA 539 (595)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (595)
+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|++++|+.+|++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9988877633 57788888888888898888888888877653 3455677888888899999999999999988754 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 540 PDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.|+.+...+.+++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6788888899999999999999988877654
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=5e-11 Score=123.55 Aligned_cols=370 Identities=13% Similarity=0.080 Sum_probs=278.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007626 194 IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR 273 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 273 (595)
.-.........|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-......+ .|...|..+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHh
Confidence 3334444455699999999999999875 56788999999999999999999988877666554 577899999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCChh
Q 007626 274 IGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVV----TYTSVISGYCKLGKMD 349 (595)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~g~~~ 349 (595)
.|.+++|.-.|.+..+.. +++...+-.-...|-+.|+...|..-|.++....+ +.|.. .-..++..+...++.+
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999764 45555556667788899999999999999987542 11222 2233456677778889
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------------------C
Q 007626 350 KATGIYNEMNSCG-IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP---------------------------D 401 (595)
Q Consensus 350 ~A~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~ 401 (595)
.|.+.++.....+ -..+...++.++..|.+...++.|......+......+ +
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999998887622 23455678888999999999999988777766521122 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 007626 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN--LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVI 479 (595)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 479 (595)
...+ .++-++......+....+........ ...+...|.-+..+|...|++.+|..++..+......-+...|-.+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 2221 12223333444444444444444444 44456788999999999999999999999999876666788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHH
Q 007626 480 DGFCKAGNVDEANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRMVEAISIFNKMLR--------IGCAPDDITVNSLIS 550 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~l~~ 550 (595)
.+|...|.+++|.+.|+..+.. .| +...--+|...+.+.|+.++|.+.++.+.. .+..|+........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 9999999999999999999976 34 344455677778899999999999998542 345666777778888
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007626 551 CLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+.+.|+.++-+.....++.
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 99999999887766665554
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1.4e-11 Score=126.33 Aligned_cols=133 Identities=11% Similarity=-0.009 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH--HHHH
Q 007626 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMY-NPVIDGFCKAGNVDEANVIVAEMEEKRCKP-DK--VTFT 511 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~--~~~~ 511 (595)
+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.+++..+. .| |. ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHH
Confidence 6667777777777777777777777777765432211111 11112223346777888888887765 33 33 4567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 512 ILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++.+.+.+.|++++|.+.|++.......|+...+..+...+.+.|+.++|.+++++...
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888889999999999998644444578888888999999999999999999988654
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.8e-11 Score=116.08 Aligned_cols=400 Identities=11% Similarity=0.008 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q 007626 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN-SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNAL 236 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (595)
.+-...+-+.++|++++|++.|.+.++. .|+ +..|.....+|...|+++++.+--.+..+.+ +.-+.++..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 3445667788999999999999999986 567 7788899999999999999999888887754 22344555566677
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHH--------
Q 007626 237 VKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG--CSPDIVTYNTLISGL-------- 306 (595)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~-------- 306 (595)
-..|++++|+.=..-..-.+--.|..+--.+=+.+-+.++ ..+.+.+. +.+ +-|......+....+
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhc---ccCCCCCCcHHHHHHHHhhccccccccc
Confidence 7778887776422222111111111111111111111111 11111111 111 122222222211111
Q ss_pred ---------------Hh--cC---CHHHHHHHHHHHHhcCCCCCC-----H------hhHHHHHHHHHhcCChhHHHHHH
Q 007626 307 ---------------CR--VN---EVARGHELLKEVKFKSEFSPD-----V------VTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 307 ---------------~~--~g---~~~~A~~~~~~~~~~~~~~p~-----~------~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
.. .+ .+..|...+.+-.......++ . .+...-...+.-.|+.-.|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 00 01 233333333222111101111 1 11111122234457888899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 007626 356 NEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP 435 (595)
Q Consensus 356 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 435 (595)
+..+.....++ ..|--+..+|....+.++....|.+..+.. +-++.+|..-...+.-.+++++|..=|++.+... +.
T Consensus 350 ~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe 426 (606)
T KOG0547|consen 350 DAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PE 426 (606)
T ss_pred HHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hh
Confidence 99888653332 237777778899999999999999988765 3466778887888888889999999999988775 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH--
Q 007626 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCK-----PDKV-- 508 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-- 508 (595)
+...|-.+.-+..+.+++++++..|++.+++= +--+.+|+.....+...++++.|.+.|+..++.... .+..
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 66777777777788899999999999988753 446789999999999999999999999998865211 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 509 TFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.--.++..- -.+++..|+.++++.++.+ +-....|.+|...-.+.|+.++|+++|++...
T Consensus 506 V~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 506 VHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 112222222 3488999999999998865 44557788999999999999999999988654
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=2e-11 Score=124.47 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=167.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHH--HHHHHHHhcCChhH
Q 007626 274 IGEVKKAFEFFYDMGSFGCSPDIVT-YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYT--SVISGYCKLGKMDK 350 (595)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~g~~~~ 350 (595)
.|++++|.+.+....+.. +++.. |..........|+++.|.+.+.++.+. .|+...+. .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence 356666655555443321 11122 222223334556666666666665542 23332221 22445556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHH
Q 007626 351 ATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV-------VTFSSLIDGYCRNGQLNQGLK 423 (595)
Q Consensus 351 A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~ 423 (595)
|.+.++++.+.. +-+...+..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 666666665544 334455555666666666666666666666655433211 122233333333444555555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007626 424 LCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 424 l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
+++.+.+. .+.++.....+...+...|+.++|.+++++..+. .+++... ++.+....++.+++.+..++..+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 66655433 3456777777778888888888888888777763 3344221 2333345578888888888877663
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
+-|...+..+...|.+.|++++|.+.|+++.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 235556677778888888888888888888764 57888877888888888888888888887654
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.3e-11 Score=125.71 Aligned_cols=252 Identities=11% Similarity=0.035 Sum_probs=140.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh
Q 007626 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYN--TLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMD 349 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 349 (595)
.+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.+.++.+.... +-+......+...|.+.|+++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHH
Confidence 4555555555555555432 33332221 22334445555555555555554433 223344455555555555555
Q ss_pred HHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007626 350 KATGIYNEMNSCGIKPSA-------VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGL 422 (595)
Q Consensus 350 ~A~~l~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 422 (595)
+|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555555555554322111 12222232223333444455555554332 1345666667777777777777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007626 423 KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 423 ~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
.++++..+. +|+.... ++.+....++.+++.+..+...+..+ -|+..+..+...+.+.+++++|.+.|+...+.
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~- 357 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ- 357 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 777777663 4444222 22333345777777777777766553 35666777777777777777777777777765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 503 CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 503 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.|+..++..+...+.+.|+.++|.+++++...
T Consensus 358 -~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 -RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57777777777777777777777777776654
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.2e-14 Score=141.54 Aligned_cols=260 Identities=16% Similarity=0.139 Sum_probs=70.6
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCC-CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007626 197 FVSSCIRAGKCDAAKGLLSQFRPGE-VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG 275 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 275 (595)
+...+.+.|++++|.++++...... .+.+...|..+.......++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455555555555555554332222 1223333444444444555566666666655554432 34444444444 4555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 007626 276 EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
++++|.+++....+. .++...+..++..+.+.++++++.++++.+......+.+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556665555544332 234444455555555556666666665555443333344555555555555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 007626 356 NEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP 435 (595)
Q Consensus 356 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 435 (595)
++..+.. +-|......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|+..+++..+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 6655532 2234445555555555555555555555544432 2333445555555555566666666665555432 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007626 436 NVYTFTILINALCKENRLNDARRFLKQL 463 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (595)
|+.....+..++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 5555555555555555555555555443
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=1.3e-11 Score=126.40 Aligned_cols=289 Identities=10% Similarity=-0.010 Sum_probs=186.7
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 007626 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIV--TYNTLISGLCRVNEVARG 315 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A 315 (595)
..|+++.|.+.+.+..+..+. ....+-....++.+.|+.+.|.+.+.+..+. .|+.. ........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 457777777777766654321 2333444456666777777777777776543 23332 333346666677777777
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHH
Q 007626 316 HELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFN-VLIDGF---GKVGNMVSAEYMRE 391 (595)
Q Consensus 316 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-~ll~~~---~~~g~~~~A~~~~~ 391 (595)
.+.++.+.... +-+...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+..+++...+.
T Consensus 173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777777654 334556777777777888888888888887776543 222221 111111 22222222333444
Q ss_pred HHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007626 392 RMLSFGY---LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYT---FTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 392 ~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
.+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 4443321 1377788888888899999999999999888763 33321 11111222345777888888888776
Q ss_pred CCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 466 NDLVPKP--FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 466 ~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+ .|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 643 245 677788999999999999999999544444478888888999999999999999999988654
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=7.6e-12 Score=119.44 Aligned_cols=387 Identities=12% Similarity=0.083 Sum_probs=258.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007626 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLP----NSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
+.+++.+.+++.+|+++|+-....-... .....+.+...+.+.|.++.|+.-|+...+. .|+..+--.|+-++.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 3456777888889999887766531111 2234555556678889999999999888765 356555555566666
Q ss_pred HcCCHhHHHHHHHHHHHcCCCC------------CHHHHHHHH-----HHHHhcC--CHHHHHHHHHHHhhCCCCCCHHH
Q 007626 238 KQNNADEAVYMFKEYFRLYSQP------------DTWTFNILI-----QGLSRIG--EVKKAFEFFYDMGSFGCSPDIVT 298 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~------------~~~~~~~li-----~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t 298 (595)
.-|+.++..+.|.+|+..-..+ +....+-.| +-.-+.+ +.++++-.--++..--+.|+-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 6788888888888887643222 222222211 1111111 11222222222222112222100
Q ss_pred -------------H--------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhh-----------------------
Q 007626 299 -------------Y--------NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVT----------------------- 334 (595)
Q Consensus 299 -------------~--------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~----------------------- 334 (595)
| ..-...|.+.|+++.|+++++-+..+..-..+...
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 0 11123567788888888887776654321111111
Q ss_pred -------HHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007626 335 -------YTS-----VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV 402 (595)
Q Consensus 335 -------~~~-----ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 402 (595)
||. -.......|+++.|.+.|++.+..+-.-....|+ +.-.+-..|++++|+..|-++..- +..+.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~ 558 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNA 558 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhH
Confidence 110 0011123578999999999998643222222233 333567889999999988776542 12467
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007626 403 VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482 (595)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (595)
.+...+.+.|....+...|++++.+.... ++.|+...+.|...|-+.|+-..|.+.+-+--. -++.+..+..-|...|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHH
Confidence 77888889999999999999999988766 688999999999999999999999988765443 3455788888899999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007626 483 CKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC-MKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
....-+++|+.+|++..- +.|+..-|..||..|. +.|++..|..+++...+ .++.|...+.-|++.+...|.
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 999999999999999764 4799999998887665 59999999999998766 578888999889888887774
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2e-09 Score=103.89 Aligned_cols=419 Identities=11% Similarity=0.078 Sum_probs=307.0
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007626 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS-PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
.+...|-.-+..=.+++.+..|..++++....- |-+ ..|.-.+..=-..|++..|.++|++-.+ ..|+...|++.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 455577777888888889999999999888753 333 2344444444567899999999998876 46899999999
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcC
Q 007626 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF-GC-SPDIVTYNTLISGLCRVN 310 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~li~~~~~~g 310 (595)
|+.=.+-+.++.|..+|++.+- +.|++.+|--..+-=-+.|....|..+|....+. |- .-+...+.+....-.++.
T Consensus 181 I~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876 4688988888888888899999999988877642 10 112233444444444567
Q ss_pred CHHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007626 311 EVARGHELLKEVKFKSEFSPD--VVTYTSVISGYCKLGKMDKATGI--------YNEMNSCGIKPSAVTFNVLIDGFGKV 380 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~l--------~~~m~~~g~~p~~~~~~~ll~~~~~~ 380 (595)
.++.|.-+|+-....- +.+ ...|..+...=-+.|+.....+. |+.++..+ +-|..+|--.++.-...
T Consensus 259 E~ERar~iykyAld~~--pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 259 EYERARFIYKYALDHI--PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhc
Confidence 7888888888776543 222 34555555544455654433322 44455544 56788888888888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH--HHHHHHH----H----HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---
Q 007626 381 GNMVSAEYMRERMLSFGYLPDV--VTFSSLI----D----GYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINAL--- 447 (595)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~--~~~~~li----~----~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~--- 447 (595)
|+.+...+++++.+.. ++|-. ..|...| + .-....+++.+.++++..++. +|....||..+--.|
T Consensus 336 g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 336 GDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHH
Confidence 9999999999999986 34422 1222211 1 123578999999999999884 666777777665555
Q ss_pred -HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 448 -CKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 448 -~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 526 (595)
.++.++..|.+++...+ |..|...++...|..-.+.+++|....++++.++.+.. +-.+|.-....-...|+.+.|
T Consensus 414 eIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHH
Confidence 46788999999999887 66788999999999999999999999999999998533 677888888777889999999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 007626 527 ISIFNKMLRIG-CAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRT 587 (595)
Q Consensus 527 ~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (595)
..+|+-+++.. .......|-+.|+.-...|.++.|..++++.++...-. ++|.....+..
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA~fe~ 551 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFAKFEA 551 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHHHHhc
Confidence 99999998743 22334567777777789999999999999999876432 26655544433
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=3.5e-11 Score=110.58 Aligned_cols=292 Identities=14% Similarity=0.139 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHH
Q 007626 275 GEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD--VVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~ 352 (595)
.+.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+.+.+.+....+.+-+ ......|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45566666666665421 223344455666666666666666666666543222111 123344556666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007626 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD----VVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
.+|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777776644 23344566677777777777777777777766553332 234555556666667778888888777
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007626 429 KGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV 508 (595)
Q Consensus 429 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 508 (595)
.+.+ +-.+..--.+.+.....|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+.++.+.. +...
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 6664 334445555667777788888888888888777655556677778888888888888888887777653 2333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 007626 509 TFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK---GGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 573 (595)
.-..+...-....-.+.|..++.+-+.. +|+...+..|++.-.. .|...+....++.|+...-
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 3334444434444556666655554443 6787777777776543 3456666667777765543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.2e-10 Score=109.19 Aligned_cols=368 Identities=11% Similarity=0.006 Sum_probs=250.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH-
Q 007626 186 GHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTF- 264 (595)
Q Consensus 186 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~- 264 (595)
+..-|...+-.....+.+.|..+.|+..|...+.. .+....+|-.|.... .+.+.+ ......++..+...-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVGLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhcCcccchHHHH
Confidence 33556555555556667778888888888777643 234444444444332 222222 222211111122211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHH
Q 007626 265 NILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSP-DVVTYTSVISGYC 343 (595)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~ 343 (595)
-.+..++......+++++-.......|++-+...-+....+.....++++|+.+|+++.+..+... |..+|..++-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv-- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV-- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--
Confidence 123456666678888888888888878766655555566666778899999999999987754332 45677776643
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007626 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLK 423 (595)
Q Consensus 344 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 423 (595)
+..+.. +..+.+-...=-+--..|+..+.+-|+-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+
T Consensus 309 ~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 332222 1122211111013345677788888888899999999999998875 2345678888888999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007626 424 LCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 424 l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
-++..++-. |-|-..|..|.++|.-.+...-|.-+|++..+..+ -|...|.+|...|.+.++.++|++-|.+....|-
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999988875 67888999999999999999999999999887653 3788999999999999999999999999888763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLR----IGCAPD--DITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
. +...+..+...|-+.++..+|.+.|++.++ .|...+ ..+..-|..-+.+.+++++|..+.....
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 3 668888999999999999999988888776 232222 2222335556677777777776554444
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.2e-09 Score=101.03 Aligned_cols=387 Identities=12% Similarity=-0.018 Sum_probs=274.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHH
Q 007626 150 LSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY 229 (595)
Q Consensus 150 ~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 229 (595)
.+...|...+-....++-+.|..+.|++.|......- |..-..|..|...+ -+.+.+..+...+.. ......-
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~l~~~l~~---~~h~M~~ 230 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSILVVGLPS---DMHWMKK 230 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHHHHhcCcc---cchHHHH
Confidence 3444677777777778889999999999998877643 44445555544433 223332222222111 0122222
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHH
Q 007626 230 NSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC--SPDIVTYNTLISGLC 307 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~ 307 (595)
-.+..++-...+.+++..-.+.....|..-+...-+....+.-...++++|+.+|+++.+... --|..+|+.++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 345566777778899999999988888754554445555566778899999999999987521 125677777664322
Q ss_pred hcCCHH-HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 308 RVNEVA-RGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSA 386 (595)
Q Consensus 308 ~~g~~~-~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 386 (595)
...++. -|..++ ...... +.|...+.+-|.-.++.+.|...|+..++.+ +.....|+.+.+-|....+...|
T Consensus 311 ~~skLs~LA~~v~----~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS----NIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhHHHHHHHHHHH----HhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 211111 122222 122133 3567778888889999999999999999865 34556788888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007626 387 EYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN 466 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 466 (595)
..-++..++-. +.|-..|-.|.++|.-.+...-|+-.|++..... |.|...|.+|..+|.+.++.++|++.|+.....
T Consensus 384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999864 5588899999999999999999999999998875 779999999999999999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007626 467 DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK----RCKPDKVTF---TILIIGHCMKGRMVEAISIFNKMLRIGCA 539 (595)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (595)
|-. +...|..|.+.|-+.++.++|...|++.++. |.. +..|. -.|..-+.+.+++++|..+.......
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--- 536 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--- 536 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC---
Confidence 743 6689999999999999999999998887652 333 22222 22444456677777777666554331
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 540 PDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
.-..++|..+++++.+..
T Consensus 537 ---------------~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 537 ---------------ETECEEAKALLREIRKIQ 554 (559)
T ss_pred ---------------CchHHHHHHHHHHHHHhc
Confidence 334577777777776544
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=6e-09 Score=100.71 Aligned_cols=409 Identities=11% Similarity=0.069 Sum_probs=309.1
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007626 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
+...|-.-..-=..++++..|..+|++.+... ..+...|..-+.+=.+.+.+..|..+++..+..= +.-...|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 44455555555566788899999999999866 5677788888888899999999999999998753 222334555666
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007626 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVAR 314 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 314 (595)
+=-..|++..|.++|++..+. .|+...|++.|+.=.+...++.|..+|+...- +.|++.+|-...+.-.+.|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 666789999999999999874 78999999999999999999999999999884 46999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH---
Q 007626 315 GHELLKEVKFKSEF-SPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS--AVTFNVLIDGFGKVGNMVSAEY--- 388 (595)
Q Consensus 315 A~~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~--- 388 (595)
+..+++.....-+- ..+...+.+....=.+...++.|.-+|+-.++. ++.+ ...|......=-+-|+......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999887653210 112334455555455677889999999988875 2333 3344444443344455443332
Q ss_pred -----HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHH---HHcCCH
Q 007626 389 -----MRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV-------YTFTILINAL---CKENRL 453 (595)
Q Consensus 389 -----~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~~~~~ll~~~---~~~g~~ 453 (595)
-++.+.+.+ +.|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=-+| ....++
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 234444443 457778888888888899999999999999876 45532 1222222222 357889
Q ss_pred HHHHHHHHHHHhCCCCCC-HhhHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007626 454 NDARRFLKQLKWNDLVPK-PFMYN----PVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAIS 528 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~~p~-~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 528 (595)
+.+.++++...+ +.|. ..|+. .......++.++..|.+++...+ |.-|-..+|...|..-.+.+.+|...+
T Consensus 383 ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 383 ERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 999999999887 3343 44444 44444557889999999999987 457889999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007626 529 IFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 529 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
++++.++.+ +-+-.+|......-...|+.+.|..+|+-++.....+.|
T Consensus 459 LYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 459 LYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 999999976 667788988888888999999999999999987765554
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.5e-10 Score=106.59 Aligned_cols=300 Identities=14% Similarity=0.076 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC-CCccC--HHHHHHHHH
Q 007626 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG-EVTMS--TFMYNSLLN 234 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~--~~~~~~li~ 234 (595)
.|-.=++.+. +++.++|+++|-+|.+.. +.+..+--+|.+.|.+.|..|.|+++++.+.+. +.+.+ ..+...|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3433344333 567889999999998854 555666778888899999999999999888764 22111 234456778
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcC
Q 007626 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI----VTYNTLISGLCRVN 310 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g 310 (595)
-|...|-+|.|..+|..+.+.+. --......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 88888999999999998876542 34567788889999999999999998888766544432 23444455555567
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 311 EVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMR 390 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 390 (595)
+.+.|..++.+..... +..+..--.+.......|+++.|++.++...+.+..--..+...|..+|...|+.++....+
T Consensus 195 ~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888888877654 23344445566778888889999988888888754444556777888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhC
Q 007626 391 ERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK---ENRLNDARRFLKQLKWN 466 (595)
Q Consensus 391 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~ 466 (595)
.++.+.. +....-..+........-.+.|...+.+-+.. .|+...+..+++.-.. .|...+...+++.|...
T Consensus 273 ~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 273 RRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8887753 34444444444444445556666665555554 5788888888876543 34455556666666543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.6e-11 Score=123.38 Aligned_cols=289 Identities=11% Similarity=0.058 Sum_probs=200.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCChhHHHH-
Q 007626 276 EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFS-PDVVTYTSVISGYCKLGKMDKATG- 353 (595)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~- 353 (595)
+..+|...|....+. +.-+......+..+|...+++++|.++|+.+....+.. .+...|.+.+-.+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 23344566677788888888888888888887654322 245566666544322 11111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 007626 354 IYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN 432 (595)
Q Consensus 354 l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 432 (595)
+-+++.+.. +-.+.+|.++.++|.-.++.+.|++.|++.+... | ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 222233322 4566788888888888888888888888887753 4 56778877777788888888888888876553
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007626 433 LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTI 512 (595)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 512 (595)
+-+-..|..+.-.|.+.++++.|+-.|+.+.+.++. +......+...+-+.|+.|+|+++++++.....+ |+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 223445556777788888888888888888877644 5667777778888888888888888888876533 4444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007626 513 LIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
.+..+...+++++|+..++++.+. ++.+...+..++..|.+.|+.+.|+.-|--|.+-.+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 555666778888888888888774 355566777888888888888888888877777665443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=7.6e-10 Score=105.12 Aligned_cols=294 Identities=12% Similarity=0.054 Sum_probs=210.2
Q ss_pred HHHHHHH--HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007626 161 LVMRSLC--EMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 161 ~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
.+..++. -.|+|..|+++..+-.+.+ +.....|..-+.+--+.|+.+.+-.++.++.+..-.++...+-+....+..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 3444443 4799999999999988776 344456666777788899999999999999876446777788888899999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCC
Q 007626 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI-------VTYNTLISGLCRVNE 311 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~ 311 (595)
.|+.+.|..-++++.+.++ .+........++|.+.|++.+...++..|.+.|.-.+. .+|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998876 47788899999999999999999999999988866554 355666665555555
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007626 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRE 391 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 391 (595)
.+.-...+++....- ..++..-.+++.-+.+.|+.++|.++..+..+.+..|+. ...-.+.+.++...-.+..+
T Consensus 245 ~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHH
Confidence 555445555554432 344555566677777788888888888887777655551 12223455666666666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007626 392 RMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 392 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
.-.+. .+-++..+.+|...|.+.+.+.+|...|+...+. .|+..+|..+..++.+.|+..+|.++.++...
T Consensus 319 ~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 319 KWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55443 1234466777777777777777777777765554 56777777777777777777777777766543
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1e-09 Score=104.25 Aligned_cols=285 Identities=9% Similarity=0.071 Sum_probs=140.7
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007626 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
.|++..|++...+-.+.+.. ....|..-+.+--+.|+.+.+-+++.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35555555555554444432 23344444455555555555555555555432233444444444555555555555555
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 007626 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSA-------VTFNVLIDGFGKVGNMVSAEYMRE 391 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~ 391 (595)
++++.... +...........+|.+.|++.+...++..|.+.|.--+. .+|..+++-....+..+.-...++
T Consensus 176 v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 55555433 233444555555566666666666666666555533332 234444444444444444444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007626 392 RMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPK 471 (595)
Q Consensus 392 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 471 (595)
..... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|+ -...-.+.+-++.+.-.+..+.-.+... .+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP-ED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC-CC
Confidence 44332 123444455555555666666666666665555543332 1111123344444444444444333321 23
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 472 PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
+..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555554443 4555555555555555555555555555544
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=5.5e-11 Score=119.62 Aligned_cols=197 Identities=14% Similarity=0.049 Sum_probs=107.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HH
Q 007626 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS---SL 408 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~l 408 (595)
..+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+.. |+..|+ -+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGl 495 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGL 495 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhh
Confidence 3456666666666666666666666655532 114455555555555555666666666555432 333333 23
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007626 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.-.|.+.++++.|.-.|++..+-+ |-+.+....+...+-+.|+.++|+.+++++...+.+ |+..--.-+..+...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcch
Confidence 445556666666666666655543 334445555555556666666666666666555543 333333344445555666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007626 489 DEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
++|+..++++++. ++-+...|-.+...|.+.|+.+.|+.-|.-|.+.
T Consensus 574 ~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 574 VEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6666666666554 2223444555556666666666666666555554
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.9e-09 Score=106.62 Aligned_cols=417 Identities=13% Similarity=0.028 Sum_probs=278.0
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhc----cCCC
Q 007626 146 SRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF----RPGE 221 (595)
Q Consensus 146 ~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~ 221 (595)
+.+-.++.-|+..--.+..++.-.|++..|..++..-.-. ..|..+.......+.+.+++++|..++... ....
T Consensus 39 adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~ 116 (611)
T KOG1173|consen 39 ADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFS 116 (611)
T ss_pred HHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchh
Confidence 3333334455556666788888888888887777654322 456777777888888888888888888722 1100
Q ss_pred ---------CccC-----------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHh-----
Q 007626 222 ---------VTMS-----------TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL---IQGLSR----- 273 (595)
Q Consensus 222 ---------~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~----- 273 (595)
+.++ ...+-.=...|....++++|...|.+.... |...|..+ +....-
T Consensus 117 yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee 192 (611)
T KOG1173|consen 117 YYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEE 192 (611)
T ss_pred hcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHH
Confidence 0000 000111123344455677777777776543 33333222 211110
Q ss_pred ------------cCC-HHHHHHHHH----HHhh------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 274 ------------IGE-VKKAFEFFY----DMGS------------FGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKF 324 (595)
Q Consensus 274 ------------~g~-~~~A~~~~~----~m~~------------~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (595)
.+. .+....+|+ ++.. .+..-+......-.+-+...+++.+..++++.+..
T Consensus 193 ~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle 272 (611)
T KOG1173|consen 193 FELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE 272 (611)
T ss_pred HHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh
Confidence 011 111111222 1100 11222344444555566778899999999999887
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007626 325 KSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVT 404 (595)
Q Consensus 325 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 404 (595)
.. ++....+..-|.++...|+..+-..+=.+|++.- |-...+|-++.--|...|+..+|.+.|.+....... =...
T Consensus 273 ~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpa 348 (611)
T KOG1173|consen 273 KD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPA 348 (611)
T ss_pred hC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHH
Confidence 76 4555566666778889999888888888888753 556788888888888889999999999987764311 2357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 007626 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK 484 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 484 (595)
|-.+...|.-.|..|.|...+...-+.- +-...-+..+.--|.+.+..+.|.++|.+.....+ .|+..++.+.-....
T Consensus 349 Wl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~ 426 (611)
T KOG1173|consen 349 WLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYT 426 (611)
T ss_pred HHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-Ccchhhhhhhheeeh
Confidence 8888889999999999998887765441 11112233344557788999999999998886653 378888888888888
Q ss_pred cCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007626 485 AGNVDEANVIVAEMEEK--RCK----PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMP 558 (595)
Q Consensus 485 ~g~~~~A~~l~~~m~~~--g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 558 (595)
.+.+.+|..+|+..+.. ... --..+++.|..+|.+.+++++|+..+++.+... +.+..++.+++-.|...|++
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcCh
Confidence 88999999999887632 011 133467888899999999999999999998864 77888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 007626 559 NEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 559 ~~A~~~~~~~~~~~~~~ 575 (595)
+.|++.|.+++-..+..
T Consensus 506 d~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 506 DKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 99999998888665544
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2e-09 Score=104.47 Aligned_cols=386 Identities=12% Similarity=0.040 Sum_probs=257.6
Q ss_pred CCchHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007626 134 DNPKLGLKFLEFSRVNLSLNHS-FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
++.+.|.+++.|+.. +.|+ +.-|.....+|...|+|+++++.-....+.+ +.-+..+..-.+++-..|++++|+.
T Consensus 129 kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred ccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHHHHHH
Confidence 456789999999875 3366 7889999999999999999999999888875 4456677777888888888888764
Q ss_pred HHHhc-cCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHh---------------
Q 007626 213 LLSQF-RPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFR-LY--SQPDTWTFNILIQGLSR--------------- 273 (595)
Q Consensus 213 ~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~~~~~~~~~~li~~~~~--------------- 273 (595)
=..-. +-.|+. +..+- .++.-..+ ..|....++-.+ ++ .-|......+....|..
T Consensus 205 D~tv~ci~~~F~-n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 205 DVTVLCILEGFQ-NASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred hhhHHHHhhhcc-cchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 32221 111111 11111 11111111 112222222122 22 12333322222222210
Q ss_pred ----------cC---CHHHHHHHHHHHhh-CCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007626 274 ----------IG---EVKKAFEFFYDMGS-FGCSPD-----------IVTYNTLISGLCRVNEVARGHELLKEVKFKSEF 328 (595)
Q Consensus 274 ----------~g---~~~~A~~~~~~m~~-~g~~p~-----------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 328 (595)
.+ .+..|.+.+.+-.. ....++ ..+.......+.-.|+.-.|.+-|+......
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-- 356 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-- 356 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--
Confidence 01 12223322222111 001111 1122222222344688889999999988754
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007626 329 SPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSL 408 (595)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 408 (595)
+.+...|--+...|....+.++....|++..+.+ +-|..+|..-...+.-.+++++|..=|++.++.. +-+...|..+
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 2223338888888999999999999999998876 4567788888888888999999999999999864 2356677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-------CCHhhHHHHHHH
Q 007626 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-------PKPFMYNPVIDG 481 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------p~~~~~~~li~~ 481 (595)
..+..+.++++++...|++.+++ +|..+..|+.....+...+++++|.+.|+..++.... +.+.+.-.++..
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 77888999999999999999876 6778899999999999999999999999998765322 112222233332
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007626 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
-.+ +++..|..++.+..+.+.+ ....|.+|...-.+.|+.++|+++|++....
T Consensus 514 qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 514 QWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred chh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 233 8999999999999987433 5668999999999999999999999987653
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1.1e-09 Score=103.11 Aligned_cols=200 Identities=15% Similarity=0.058 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007626 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINAL 447 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~ 447 (595)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444555555555555555555554432 2234455555555566666666666666555543 33444555556666
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 448 CKENRLNDARRFLKQLKWNDL-VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 526 (595)
...|++++|.+.+++...... ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666654321 1223455566667777777777777777776653 22455666777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007626 527 ISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 527 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
..++++..+. .+.+...+..++..+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777777765 2445566666777777777777777777766543
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=3.9e-10 Score=116.48 Aligned_cols=364 Identities=13% Similarity=0.073 Sum_probs=219.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHH
Q 007626 149 NLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFM 228 (595)
Q Consensus 149 ~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 228 (595)
..|..|+..+|..+|..||..|+.+.|- +|..|.....+.+...|+.++.+....++.+.+. .|...+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4566777777777777777777777777 7777777666667777777777766666665544 456677
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHH
Q 007626 229 YNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG-SFGCSPDIVTYNTLISGLC 307 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~ 307 (595)
|..|..+|...|++.. |+...+ ....++..+...|--.....++..+. ..+.-||..+ .+....
T Consensus 86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv 150 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLV 150 (1088)
T ss_pred HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHH
Confidence 7777777777777655 222221 12234445555565555555554432 2233444443 444455
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKL-GKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSA 386 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 386 (595)
-.|.++.+++++..+.......|..+ .+.-.... ..+++-..+-+...+ .|+..+|..++++-...|+++.|
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence 66778888888777654332222222 23332222 223333333333333 58999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007626 387 EYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN 466 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 466 (595)
..++.+|.+.|++.+..-|..|+-+ .++...+..+++-|...|+.|+..|+..-+..+.+.|....+.+..+ .
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq----~ 296 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ----L 296 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccc----h
Confidence 9999999999999998888888766 88888999999999999999999999988888877665333222111 1
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC
Q 007626 467 DLVPKPFMYNPVIDGFCKAGNVDE-----ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI--GCA 539 (595)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~-----A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~ 539 (595)
..-.+...+..+..+....+..+. ....+.+..-.|+.-....|. ++.-...+|+-++.+++...|..- ...
T Consensus 297 ~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 297 AHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccC
Confidence 111122233333333222222221 111222222224443333333 333344578888888888887652 122
Q ss_pred -CCHHHHHHHHHHHHh
Q 007626 540 -PDDITVNSLISCLLK 554 (595)
Q Consensus 540 -p~~~~~~~l~~~~~~ 554 (595)
.+...|..++.-|.+
T Consensus 376 ~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFR 391 (1088)
T ss_pred cchHHHHHHHHHHHHH
Confidence 234456555655544
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=7.4e-08 Score=97.02 Aligned_cols=421 Identities=13% Similarity=0.100 Sum_probs=246.3
Q ss_pred CchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007626 135 NPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLL 214 (595)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 214 (595)
.-..++++..-.-...+ --..+.....-.++..|+-++|....+...... .-+...|..+.-.+...+++++|++.|
T Consensus 22 QYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 34445555444433222 223344445555667788888888777777654 445567777777777778888888888
Q ss_pred HhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CC
Q 007626 215 SQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG-CS 293 (595)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 293 (595)
..+...+ +.+..++.-+.-.-+..++++.....-.+..+..+ .....|..++.++.-.|+...|..++++..+.. -.
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 8887765 45677777776666777777777777777666543 355677777888888888888888888776543 24
Q ss_pred CCHHHHHHHHH------HHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 007626 294 PDIVTYNTLIS------GLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSA 367 (595)
Q Consensus 294 p~~~t~~~li~------~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 367 (595)
|+...|..... ...+.|..++|.+.+......- ......-.+-...+.+.+++++|..+|..++... ||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 56555543322 2345677777777666554321 1122233445566778888888888888888764 555
Q ss_pred HHHHH-HHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007626 368 VTFNV-LIDGFGKVGNMVSAE-YMRERMLSFGYLPDVVTFSSL-IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI 444 (595)
Q Consensus 368 ~~~~~-ll~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll 444 (595)
.-|.. +..++.+..+.-++. .+|....+. .|....-..+ +.......-.+..-.++..+.+.|+++ ++..+.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 55544 444444344444444 556555443 1111111111 111111222334445566666777654 233333
Q ss_pred HHHHHcCCHHHHHHHHHHH----HhCC----------CCCCHh--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007626 445 NALCKENRLNDARRFLKQL----KWND----------LVPKPF--MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV 508 (595)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~----~~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 508 (595)
..|-.....+-..++.-.+ ...| -+|... ++-.++..+-+.|+++.|..+++..... .|+.+
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 3332211111111111111 1110 134433 3345666777788888888888887765 45543
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 509 -TFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 509 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
-|..-...+...|.+++|..++++..+.+ .+|..+-..-+.-..++++.++|.++..+.-+.+
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 34455566777888888888888887765 5666665566777778888888888877776655
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.3e-09 Score=102.82 Aligned_cols=199 Identities=13% Similarity=0.068 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007626 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 305 (595)
...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455555666666666666666666555432 234455555556666666666666666555432 2233444455555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007626 306 LCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVS 385 (595)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 385 (595)
+...|++++|.+.+++.............+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 555556666665555554322111223334444555555555555555555555432 2223344444455555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007626 386 AEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 386 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555554443 1223334444444444555555555544443
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=2.9e-09 Score=113.50 Aligned_cols=266 Identities=13% Similarity=0.043 Sum_probs=167.2
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH---------cCCHhHHHHHHHHHHH
Q 007626 189 PNSPMIEFFVSSCIR-----AGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK---------QNNADEAVYMFKEYFR 254 (595)
Q Consensus 189 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 254 (595)
.+...|...+++... .+.+++|...|++..+.. +.+...|..+..++.. .+++++|...+++.++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344455555544322 133567888888887654 2345556555554432 2347788888888887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-Hh
Q 007626 255 LYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD-VV 333 (595)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~ 333 (595)
..+ .+..++..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..... |+ ..
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~ 407 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAA 407 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChh
Confidence 764 467777788888888888888888888887653 3345667777888888888888888888887654 33 22
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 007626 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGY 412 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 412 (595)
.+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 333344456667888888888888776432223445666777778888888888888877654 233 33445555566
Q ss_pred HHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007626 413 CRNGQLNQGLKLCDEMKGKN-LSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
+..| ++|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666 46766666655431 11222222 22334445666665555 6666554
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=7.4e-07 Score=89.73 Aligned_cols=405 Identities=11% Similarity=0.138 Sum_probs=259.8
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCC------CccCHHH
Q 007626 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE------VTMSTFM 228 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~ 228 (595)
-...|...+.-....+-++-++.+|++.++. ++..-+..|..+++.+++++|.+.+..+.... .+.+-..
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~ql 212 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQL 212 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhH
Confidence 3457888888888888888999999988874 33346777888889999999999988876431 2345556
Q ss_pred HHHHHHHHHHcCCHh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007626 229 YNSLLNALVKQNNAD---EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305 (595)
Q Consensus 229 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 305 (595)
|.-+.+..++.-+.- ....+++.+...-...=...|.+|.+.|.+.|.+++|..+|++.... ..+..-|+.+.++
T Consensus 213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHH
Confidence 666666666553322 23344444444322222457889999999999999999999988754 2344455555555
Q ss_pred HHhcC----------------------CHHHHHHHHHHHHhcCCC----------CCCHhhHHHHHHHHHhcCChhHHHH
Q 007626 306 LCRVN----------------------EVARGHELLKEVKFKSEF----------SPDVVTYTSVISGYCKLGKMDKATG 353 (595)
Q Consensus 306 ~~~~g----------------------~~~~A~~~~~~~~~~~~~----------~p~~~~~~~ll~~~~~~g~~~~A~~ 353 (595)
|+.-. +++-.+.-|+.+....++ +.++..|..-+. +..|+..+-..
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ 368 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQIN 368 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHH
Confidence 54321 122333344444433211 122333433333 23467777888
Q ss_pred HHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 007626 354 IYNEMNSCGIKPS------AVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD---VVTFSSLIDGYCRNGQLNQGLKL 424 (595)
Q Consensus 354 l~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l 424 (595)
.|.+.... +.|. ...|..+.+.|-..|+++.|..+|++..+-..+.- ..+|......-.+..+++.|+++
T Consensus 369 tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 369 TYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88888764 2332 24577888899999999999999999887543322 34566666667788899999998
Q ss_pred HHHHhhCC-----------CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 007626 425 CDEMKGKN-----------LSP------NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN 487 (595)
Q Consensus 425 ~~~m~~~~-----------~~p------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (595)
+++....- .++ +...|...++.--..|-++....+++++.+..+. ++.+.-.....+-...-
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKY 526 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHH
Confidence 88764321 111 2234556666666778899999999999887654 45444444445556667
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHH
Q 007626 488 VDEANVIVAEMEEKRCKPDKV-TFTILIIGHCM---KGRMVEAISIFNKMLRIGCAPDDITVNSLI--SCLLKGGMPNEA 561 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~g~~~~A 561 (595)
++++.+++++-+..-..|++. .|+..+.-+.+ .-+.+.|..+|+++++ |++|...-+.-|+ ..--+.|....|
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~a 605 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHA 605 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888888888766654445543 46666655543 3468888888888888 6676554322222 222345777777
Q ss_pred HHHHHHHHh
Q 007626 562 FRIMQRASE 570 (595)
Q Consensus 562 ~~~~~~~~~ 570 (595)
..+++++..
T Consensus 606 msiyerat~ 614 (835)
T KOG2047|consen 606 MSIYERATS 614 (835)
T ss_pred HHHHHHHHh
Confidence 777777543
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=1.2e-09 Score=116.45 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH---------hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007626 311 EVARGHELLKEVKFKSEFSPDVVTYTSVISGYC---------KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG 381 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~---------~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 381 (595)
.+++|.+.|++..... +.+...|..+..++. ..+++++|...+++..+.+ +-+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3577888888877644 223445555544433 2345789999999988865 446677778888888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007626 382 NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLK 461 (595)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (595)
++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999988874 3356678888888999999999999999988774 2233333444555667889999999998
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 007626 462 QLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK-VTFTILIIGHCMKGRMVEAISIFNKMLRI-GCA 539 (595)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 539 (595)
++.....+.++..+..+...+...|++++|...+.++... .|+. ...+.+...|+..| ++|...++++.+. .-.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8876543335666778888888999999999999887654 3443 33455555667666 4777777776652 112
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007626 540 PDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 574 (595)
+....+ +-..|.-.|+.+.+..+ +++.+.+..
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 222233 33345556777777776 777776543
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.2e-08 Score=99.16 Aligned_cols=287 Identities=13% Similarity=0.033 Sum_probs=223.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHH
Q 007626 258 QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS 337 (595)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 337 (595)
..+.........-+...+++.+.+++.+...+.. ++....+..-|.++...|+..+-..+=.++.... +....+|-+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhh
Confidence 4566666677777888899999999999988643 5666777777778889998887777777777654 456789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007626 338 VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQ 417 (595)
Q Consensus 338 ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 417 (595)
+.--|...|+..+|.+.|.+....+ +-=...|-.....|+-.|..++|...+....+.- +-....+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhcc
Confidence 9999999999999999999987643 2234578888899999999999998887776531 1111112223345777899
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C--CCCCHhhHHHHHHHHHHcCCHHHH
Q 007626 418 LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN----D--LVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~--~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
.+-|.++|.+.... .|.|+..++-+.-.....+.+.+|..+|+..... + ..-...+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999998776 4778888888888888889999999999887621 1 111345789999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
+..+++.+... +.+..++.++.-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999998873 55899999999999999999999999999875 5788877766666544
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=1.6e-09 Score=112.01 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=42.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007626 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLI 409 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 409 (595)
|++.+|..++..-.-+|+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...++.++..|.+.|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 45555555555555555555555555555555555555544444432 445555555555555555555555555444
Q ss_pred HHHHH
Q 007626 410 DGYCR 414 (595)
Q Consensus 410 ~~~~~ 414 (595)
-.+..
T Consensus 279 ip~l~ 283 (1088)
T KOG4318|consen 279 IPQLS 283 (1088)
T ss_pred Hhhhc
Confidence 44444
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=2.3e-07 Score=93.59 Aligned_cols=421 Identities=15% Similarity=0.096 Sum_probs=276.7
Q ss_pred HhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007626 131 KRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAA 210 (595)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 210 (595)
..+++-+.|........... ..+.++|..+.-.+....++++|++.|..+...+ +.|...+.-+.-.-++.|+++..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 33456666666555543322 2567799999999999999999999999999987 77888888888778888999888
Q ss_pred HHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHH
Q 007626 211 KGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY-SQPDTWTFNILI------QGLSRIGEVKKAFEF 283 (595)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~ 283 (595)
...-.+..+.. +.....|..+..++.-.|+...|..++++..+.. ..|+...|.... ....+.|..++|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 88777776643 3355677888888889999999999999988765 246666655433 344567888888888
Q ss_pred HHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH-HHHHHhcCChhHHH-HHHHHHHH
Q 007626 284 FYDMGSFGCSPDIVTY-NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV-ISGYCKLGKMDKAT-GIYNEMNS 360 (595)
Q Consensus 284 ~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~-~l~~~m~~ 360 (595)
+..-... ..|...+ .+-...+.+.+++++|..++..+.... ||...|... ..++.+..+.-+++ .+|....+
T Consensus 208 L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn---Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 208 LLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN---PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC---chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 7755422 2233333 344567788999999999999998765 776666554 44444455555555 66666654
Q ss_pred CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh----hCC---
Q 007626 361 CGIKPSAVTFNVL-IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK----GKN--- 432 (595)
Q Consensus 361 ~g~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~--- 432 (595)
. .|-...-..+ +.......-.+....++..+.+.|+++ ++..+...|-.-...+-..++.-.+. ..|
T Consensus 283 ~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 283 K--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred c--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 3 1211111111 111112223344556777778888664 33344443332222221111111111 111
Q ss_pred -------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007626 433 -------LSPNVY--TFTILINALCKENRLNDARRFLKQLKWNDLVPK-PFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 433 -------~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
-+|... ++..++..+-+.|+++.|..+++..... .|+ +..|..=.+.+...|++++|..++++..+.+
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 144543 4456778889999999999999998865 454 4556666788999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------HHHHHHhcCCHHHHHHHHHHHHh
Q 007626 503 CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNS----------LISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 503 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----------l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.||...-.--..-..+.++.++|.++.....+.|. +.....+ =+.+|.+.|++.+|++-+..+.+
T Consensus 436 -~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 436 -TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred -chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 34544433455556788999999999999988774 3222211 24567788888888776655543
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=6.4e-09 Score=105.93 Aligned_cols=237 Identities=18% Similarity=0.196 Sum_probs=162.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-C
Q 007626 333 VTYTSVISGYCKLGKMDKATGIYNEMNSC-----G-IKPSAVT-FNVLIDGFGKVGNMVSAEYMRERMLSF-----GY-L 399 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 399 (595)
.+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555677777777777777777776543 1 1233322 234666777788888888888777542 21 1
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC
Q 007626 400 P-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK-----NL-SPNV-YTFTILINALCKENRLNDARRFLKQLKWN---DL 468 (595)
Q Consensus 400 p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~~-~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~ 468 (595)
| -..+++.|..+|++.|++++|...+++..+- +. .|.. ..++.+...|+..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 2346677777888888888887777654321 11 2222 23556667788889999999888876432 11
Q ss_pred CC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 007626 469 VP----KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK----RC--KP-DKVTFTILIIGHCMKGRMVEAISIFNKMLR-- 535 (595)
Q Consensus 469 ~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 535 (595)
.+ -..+++.|...|...|++++|.+++++++.. +. .+ ....++.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 2568899999999999999999999998743 11 22 245678889999999999999999987654
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 536 --IGC-APD-DITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 536 --~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
.|. .|+ ..+|..|+..|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 223 4678999999999999999999988876
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=9.9e-10 Score=101.18 Aligned_cols=238 Identities=15% Similarity=0.034 Sum_probs=196.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007626 333 VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGY 412 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 412 (595)
..-+.+..+|.+.|.+.+|.+-|+.-.+. .|-+.||..|-++|.+..+++.|..++.+-.+. ++-|+....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467888999999999999999988775 477788888999999999999999999988775 233444445667788
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 007626 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEAN 492 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (595)
...++.++|.++++...+.. +.++.....+...|...++++-|..+++++.+.|.. ++..|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88999999999999998774 667777778888888899999999999999999976 8889999999999999999999
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 493 VIVAEMEEKRCKPD--KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 493 ~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.-|++....--.|+ ...|-.+.......|++.-|.+.|+-.+..+ ......++.|.-.-.+.|++++|..+++.+..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99999886644444 3467777777788999999999999888765 55678899998888999999999999999887
Q ss_pred cCCCCC
Q 007626 571 DQNLQL 576 (595)
Q Consensus 571 ~~~~~~ 576 (595)
..+..-
T Consensus 458 ~~P~m~ 463 (478)
T KOG1129|consen 458 VMPDMA 463 (478)
T ss_pred hCcccc
Confidence 765443
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.6e-07 Score=87.72 Aligned_cols=416 Identities=10% Similarity=0.029 Sum_probs=247.7
Q ss_pred CCchHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007626 134 DNPKLGLKFLEFSRVNLSL-NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~-~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
++-.-|..|.++......- ..++.. .+...+...|++++|...|..+.... .++...+..|.-++.-.|.+.+|..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~l--Wia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQL--WIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHH--HHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 5667788888887532211 123333 37788889999999999999988865 6777788888888888899999999
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007626 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
+-.+..+ ++-....|++...+.|+-++-..+-+.+.+ ...--.+|...-...-.+++|+++|......
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 8877654 344455566666777877776666655532 2222334444444455789999999998864
Q ss_pred CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---
Q 007626 293 SPDIVTYNTL-ISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAV--- 368 (595)
Q Consensus 293 ~p~~~t~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--- 368 (595)
.|+-...|.- .-+|.+..-++-+.++++....+. +.+....|.......+.-.-..|..-.+++.+.+-..-..
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 4555555543 346678888999999998877653 3445566666655555444445555556665543110000
Q ss_pred ----------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----
Q 007626 369 ----------------------------TFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG---- 416 (595)
Q Consensus 369 ----------------------------~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---- 416 (595)
.-..|+--|.+.+++.+|..+.+++.- .++.-|-.-.-.+...|
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcC
Confidence 001122234455555555555444321 11111111111111222
Q ss_pred ---CHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 007626 417 ---QLNQGLKLCDEMKGKNLSPNV-YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEAN 492 (595)
Q Consensus 417 ---~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (595)
...-|...|...-..+..-|. .--..+..++.-..++++..-++..+...=...|.. .-.+.++++..|++.+|.
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHH
Confidence 123333333333222222121 112233334444455666666666655443222333 334678888899999999
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 493 VIVAEMEEKRCKPDKVTF-TILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITV-NSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 493 ~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++|-++....++ |..+| ..+..+|.++++++-|..++-++ +-+.+.... ..+..-|.+++.+--|-+.|+.+..
T Consensus 414 elf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 414 ELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 999887755545 55666 55667888899999888766544 333344443 3445578889998888888888877
Q ss_pred cCCCC
Q 007626 571 DQNLQ 575 (595)
Q Consensus 571 ~~~~~ 575 (595)
.++.|
T Consensus 490 lDP~p 494 (557)
T KOG3785|consen 490 LDPTP 494 (557)
T ss_pred cCCCc
Confidence 66543
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.4e-07 Score=86.11 Aligned_cols=295 Identities=10% Similarity=-0.028 Sum_probs=206.8
Q ss_pred HhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCChh
Q 007626 272 SRIGEVKKAFEFFYDMGSF-GCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV-VTYTSVISGYCKLGKMD 349 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~ 349 (595)
+-.++...|...+-.+... -++-|+.....+.+.+...|+.++|+..|++..... |+. .......-.+.+.|+++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHh
Confidence 3445555555555444322 345567777888888888999999998888876533 432 22333334456778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007626 350 KATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK 429 (595)
Q Consensus 350 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 429 (595)
....+...+.... +-....|-.-+......++++.|..+-++.++.. +.+...|-.-...+...|++++|.-.|+...
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 8877777776532 2233344444455567778888888888887753 2244455555567788899999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCCH
Q 007626 430 GKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVI-DGFCK-AGNVDEANVIVAEMEEKRCKPDK 507 (595)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~l~~~m~~~g~~p~~ 507 (595)
... |-+...|..|+..|...|++.+|..+-+..... +..+..+...+. ..+.- ..--++|.++++...+. .|+-
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 663 567888999999999999999988877665443 223455555552 33322 22457788888877754 5553
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007626 508 -VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 508 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
...+.+...|...|+.++++.++++.+. ..||....+.|.+.+...+.+++|.+.|..++..++.+..
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 3456777788899999999999999886 4799999999999999999999999999999987775543
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=5e-07 Score=84.53 Aligned_cols=388 Identities=10% Similarity=0.086 Sum_probs=209.4
Q ss_pred hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007626 132 RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAK 211 (595)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 211 (595)
++++.+.|+..+.+...... ++...+-.|.-.+.-.|.+.+|..+-....+ ++..-..+...--+.++-++-.
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred hhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHH
Confidence 34677777777777655333 5555555566666666777777776554222 2223333444445667766666
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhC
Q 007626 212 GLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNI-LIQGLSRIGEVKKAFEFFYDMGSF 290 (595)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~ 290 (595)
.+.+.+.+. ..-.-+|.......-.+.+|+++|++++..+ |+-...|. +.-+|.+..-++-+.++++-..+.
T Consensus 142 ~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 142 TFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 666655432 1223334444444445778888888877643 44444444 334566677677777777666542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCCHh-----------------------------hHHHHHH
Q 007626 291 GCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEF-SPDVV-----------------------------TYTSVIS 340 (595)
Q Consensus 291 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~~-----------------------------~~~~ll~ 340 (595)
++.+....|.......+.=+-..|+.-..++...... -|-.. ..-.|+-
T Consensus 215 -~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 215 -FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred -CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 2333334444333333322222233333333322210 01000 0001122
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 007626 341 GYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG-------NMVSAEYMRERMLSFGYLPDVV-TFSSLIDGY 412 (595)
Q Consensus 341 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~ 412 (595)
.|.+.++..+|..+.+++.- ..|-......+. +...| .+.-|.+.|+..-+.+..-|.. --.++..++
T Consensus 294 YyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 34566677777776665431 122222222222 22222 2344566666555555444432 233455566
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHH
Q 007626 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMY-NPVIDGFCKAGNVDEA 491 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A 491 (595)
.-..++|+.+..++.+...-...|...+ .+.++++..|.+.+|+++|-.+....++ |..+| ..|.++|.++++.+.|
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 6667788888877777665333344333 4667778888888888888777655555 44444 4556777888888887
Q ss_pred HHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007626 492 NVIVAEMEEKRCKPDKVTF-TILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITV 545 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 545 (595)
..++-++.. +-+..+. ..+...|.+.+.+--|-+.|+.+... .|++..|
T Consensus 448 W~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 448 WDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 666554432 2233443 33345677777777777777776654 5666666
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3e-11 Score=82.90 Aligned_cols=50 Identities=44% Similarity=0.834 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007626 259 PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR 308 (595)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 308 (595)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.22 E-value=6.1e-08 Score=100.08 Aligned_cols=305 Identities=15% Similarity=0.113 Sum_probs=134.8
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHh----
Q 007626 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY-NTLISGLCR---- 308 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~---- 308 (595)
..+...|++++|++.++.-.+. +.............+.+.|+.++|..+|..+.+.+ |+...| ..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4445667777777777664332 22233444556666677777777777777776553 444433 333333311
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 309 -VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM-DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSA 386 (595)
Q Consensus 309 -~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 386 (595)
....+...++++++.... |.......+.-.+.....+ ..+..++..+...|+|+ +|+.|-..|....+..-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 123555566666665443 3333332222222221122 23334444455555432 333333334433333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007626 387 EYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV--YTFTILINALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (595)
..++.......- ..+.+.... ....-+|.. .++..+...|...|++++|.++.++.+
T Consensus 163 ~~l~~~~~~~l~---------------~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 163 ESLVEEYVNSLE---------------SNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred HHHHHHHHHhhc---------------ccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333333322100 000000000 000012222 233334444555555555555555555
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007626 465 WNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDIT 544 (595)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 544 (595)
+..+. .+..|..-.+.+-+.|++++|.+.++...+.... |...-+-.+..+.+.|+.++|.+++....+.+..|-...
T Consensus 222 ~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 222 EHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred hcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 44322 2445555555555555555555555555544322 334444444445555555555555555544332222111
Q ss_pred --------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 545 --------VNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 545 --------~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
....+.+|.+.|++..|++.+..+.+
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12334555566666666655555444
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.3e-09 Score=100.35 Aligned_cols=227 Identities=14% Similarity=0.032 Sum_probs=113.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 007626 267 LIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG 346 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 346 (595)
+.++|.+.|.+.+|.+.|+.-++. .|-+.||..|-+.|.+.++.+.|+.++.+-.... +-|+....-+...+-..+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHH
Confidence 344444444444444444444322 3344444444444555455555555444443321 222222233444444445
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007626 347 KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCD 426 (595)
Q Consensus 347 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 426 (595)
+.++|.++|+...+.. +.++.....+...|.-.++++-|...++++...|.. +...|+.+.-+|.-.+++|-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5555555555555432 334444444455555555555555555555555532 45555555555555556665555555
Q ss_pred HHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007626 427 EMKGKNLSPN--VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 427 ~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
+....--.|+ ..+|..+.......|++..|.+.|+.....+.. +...+|.|.-.-.+.|++++|..++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5443322222 223444444445556666666666655554422 455566665555566666666666655544
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.9e-11 Score=82.30 Aligned_cols=50 Identities=54% Similarity=1.028 Sum_probs=36.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007626 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777654
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=1.4e-08 Score=103.57 Aligned_cols=239 Identities=20% Similarity=0.160 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHHC-----C--C
Q 007626 297 VTYNTLISGLCRVNEVARGHELLKEVKFK-----SEFSPDVVTY-TSVISGYCKLGKMDKATGIYNEMNSC-----G--I 363 (595)
Q Consensus 297 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~p~~~~~-~~ll~~~~~~g~~~~A~~l~~~m~~~-----g--~ 363 (595)
.+...+...|...|+++.|+.+++..... +...|.+.+. +.+...|...+++.+|..+|+++..- | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444566666666666666666554432 1112333332 34667777888888888888887541 2 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CC
Q 007626 364 KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLS-----FGY-LPDV-VTFSSLIDGYCRNGQLNQGLKLCDEMKGK---NL 433 (595)
Q Consensus 364 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~ 433 (595)
+--..+++.|..+|.+.|++++|...+++..+ .|. .|.+ ..++.+...++..+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11234567777788888888888777766543 111 1222 24566777888899999999888765432 11
Q ss_pred CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 007626 434 SP----NVYTFTILINALCKENRLNDARRFLKQLKWN----DL---VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE-- 500 (595)
Q Consensus 434 ~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-- 500 (595)
.+ -..+++.|...|.+.|++++|+++++++... +- .-....++.+...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2467889999999999999999999987643 11 11245678889999999999999999887542
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 501 --KRC-KPD-KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 501 --~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.|. .|+ ..+|..|...|...|++++|+++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 222 45789999999999999999999988774
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=1e-06 Score=90.79 Aligned_cols=411 Identities=12% Similarity=0.024 Sum_probs=242.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCcc-CHHHH
Q 007626 151 SLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTM-STFMY 229 (595)
Q Consensus 151 ~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 229 (595)
.+..+...|..|.-++...|+++.+.+.|++...-- .-....|..+...|...|.-..|..+++........| +...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 344577777777777777777777777777766532 3344567777777777777777777777665433222 33333
Q ss_pred HHHHHHHHH-cCCHhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCC-
Q 007626 230 NSLLNALVK-QNNADEAVYMFKEYFRLY----SQPDTWTFNILIQGLSRI-----------GEVKKAFEFFYDMGSFGC- 292 (595)
Q Consensus 230 ~~li~~~~~-~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~- 292 (595)
-..-..|.+ .+..++++++-.+.+... -......|..+.-+|... ....++++.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333333332 356666666655555421 112333444444444321 123466667777665432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007626 293 SPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV 372 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 372 (595)
.|+...| +.--|+..++++.|.+..++...-. -..+...|..+.-.+.-.+++.+|+.+.+...+.- .-|......
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 2322222 2233556667777777777766542 13456677777777777777777777777665421 111111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---------------------CC-------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007626 373 LIDGFGKVGNMVSAEYMRERMLSF---------------------GY-------LPDVVTFSSLIDGYCRNGQLNQGLKL 424 (595)
Q Consensus 373 ll~~~~~~g~~~~A~~~~~~m~~~---------------------g~-------~p~~~~~~~li~~~~~~g~~~~A~~l 424 (595)
-++.-...++.+++......+... |. .-...++..+.......+ ..+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccc
Confidence 122222234444443333222110 00 001112222221111000 000000
Q ss_pred HHHHhhCCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 007626 425 CDEMKGKNLS--PN------VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVA 496 (595)
Q Consensus 425 ~~~m~~~~~~--p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 496 (595)
. .+....+. |+ ...|......+.+.+..++|...+.+...... -.+..|......+...|+.++|.+.|.
T Consensus 631 ~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 L-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred c-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0 01111111 22 12344566677888889999888888876653 356778888888889999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 497 EMEEKRCKP-DKVTFTILIIGHCMKGRMVEAIS--IFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 497 ~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
..... .| ++.+..++...+.+.|+..-|.. ++..+.+.+ +.+...|-.|+..+.+.|+.++|.+.|..+.+-..
T Consensus 709 ~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 98876 34 56678899999999998888888 999999987 77899999999999999999999999999987543
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=1.2e-07 Score=97.99 Aligned_cols=260 Identities=15% Similarity=0.108 Sum_probs=120.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHc--
Q 007626 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQ-- 239 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 239 (595)
...++...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ +.+..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345566777777777777553332 23344455666666777777777777777776665 23444444454444222
Q ss_pred ---CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 240 ---NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK-KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARG 315 (595)
Q Consensus 240 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 315 (595)
...+....+|+++....+ ...+...+.-.+.....+. .+..++..+...|+++ +|+.+-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 245555666666655442 2222222222222222232 3444555555566442 444444444433333334
Q ss_pred HHHHHHHHhcC----C---------CCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 007626 316 HELLKEVKFKS----E---------FSPDV--VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS-AVTFNVLIDGFGK 379 (595)
Q Consensus 316 ~~~~~~~~~~~----~---------~~p~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~ 379 (595)
.+++....... . -+|.. .++..+...|...|++++|++++++.++. .|+ +..|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 44444332110 0 01222 12233344444445555555555544443 222 3334444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007626 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
.|++.+|...++...... .-|...-+-.+..+.+.|++++|.+++....+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 444444444444444432 123333334444444444444444444444433
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.4e-07 Score=90.63 Aligned_cols=147 Identities=11% Similarity=0.130 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhCCCCCCHhhHHHHHHHHHHcCC
Q 007626 417 QLNQGLKLCDEMKGKNLSPN-VYTFTILINALCKENRLNDARRFLK--------QLKWNDLVPKPFMYNPVIDGFCKAGN 487 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (595)
...++.+++...-+.. +.+ ..+...++......|+++.|.+++. .+.+.+. .+.+..++...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccC
Confidence 3555555555554432 222 3445555666677777777777777 3333332 34455666666777777
Q ss_pred HHHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 488 VDEANVIVAEMEEK--RCKPDKVTFTILI----IGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 488 ~~~A~~l~~~m~~~--g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 561 (595)
.+.|..++.+.... .-.+......+++ .--.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka 510 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKA 510 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHH
Confidence 77777777776532 0111222223332 22345677888888888877754 67777777777777764 56666
Q ss_pred HHHHHHH
Q 007626 562 FRIMQRA 568 (595)
Q Consensus 562 ~~~~~~~ 568 (595)
..+-+.+
T Consensus 511 ~~l~k~L 517 (652)
T KOG2376|consen 511 ESLSKKL 517 (652)
T ss_pred HHHhhcC
Confidence 6654443
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=4.6e-06 Score=84.21 Aligned_cols=401 Identities=9% Similarity=0.074 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007626 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRS-DGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
..|-.-+..+.++|++......|+..+. ..+.....+|...+......+-++.+..++++..+. ++..-+-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 4666677788889999999999998776 334445567888999999999999999999999874 34457788999
Q ss_pred HHHcCCHhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCH--HHHHHHHH
Q 007626 236 LVKQNNADEAVYMFKEYFRLY------SQPDTWTFNILIQGLSRIGEVK---KAFEFFYDMGSFGCSPDI--VTYNTLIS 304 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~--~t~~~li~ 304 (595)
+++.+++++|-+.+..++... .+.+...|+-+-...++.-+.- ....+++.+. +.-+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi--~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI--RRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc--ccCcHHHHHHHHHHHH
Confidence 999999999999998876432 2345667777777777665433 3344455544 224453 46789999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC----------------------ChhHHHHHHHHHHHCC
Q 007626 305 GLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG----------------------KMDKATGIYNEMNSCG 362 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g----------------------~~~~A~~l~~~m~~~g 362 (595)
.|.+.|.+++|..++++....- ..+.-|+.+-++|.... +++-.+.-|+.+...+
T Consensus 257 YYIr~g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999977542 34444555555554321 1223333444443321
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 007626 363 -----------IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD------VVTFSSLIDGYCRNGQLNQGLKLC 425 (595)
Q Consensus 363 -----------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~l~ 425 (595)
-+.++..|..-.. ...|+..+-...+.+.++. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0122333333222 3456677777788877764 2221 246888999999999999999999
Q ss_pred HHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----------C-------CCHhhHHHHHHHHHHc
Q 007626 426 DEMKGKNLSPN---VYTFTILINALCKENRLNDARRFLKQLKWNDL----------V-------PKPFMYNPVIDGFCKA 485 (595)
Q Consensus 426 ~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------~-------p~~~~~~~li~~~~~~ 485 (595)
++..+...+-- ..+|..-...=.+..+++.|.++++.....-- . -+...|..+++..-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99887643322 23444444555567789999998887643211 1 1234566677777778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---hcCCHHHH
Q 007626 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD-ITVNSLISCLL---KGGMPNEA 561 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~---~~g~~~~A 561 (595)
|-++....+++++.+..+. ++........-+-.+.-++++.+++++-+..=-.|+. .+|+..+.-+. ..-.++.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8999999999999988665 3332222233344566789999999988775334444 45665555443 23479999
Q ss_pred HHHHHHHHh
Q 007626 562 FRIMQRASE 570 (595)
Q Consensus 562 ~~~~~~~~~ 570 (595)
+.+|+++++
T Consensus 570 RdLFEqaL~ 578 (835)
T KOG2047|consen 570 RDLFEQALD 578 (835)
T ss_pred HHHHHHHHh
Confidence 999999998
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=2.5e-07 Score=81.93 Aligned_cols=200 Identities=13% Similarity=0.030 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007626 228 MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLC 307 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 307 (595)
+..-|.-.|...|+...|..-+++.++..+ .+..+|..+...|.+.|+.+.|.+-|++..+.. +-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 455677788888888888888888888764 467788888888888898888888888887643 335667788888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007626 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAE 387 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 387 (595)
..|++++|...|++.........-..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888887665444445678888888888888888888888888764 334556667777888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007626 388 YMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 388 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
..++.....+. ++..+.-..|..--..|+.+.+-+.=.++.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888777664 77777777777777888888777766666554
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-06 Score=86.50 Aligned_cols=391 Identities=13% Similarity=0.053 Sum_probs=204.7
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHh
Q 007626 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
+..+..|+++.|+..|.+.+... ++|...|..-..+|...|++++|++=-.+.++.. +.-...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 45677888888988888888876 6688888888888888888888887776666653 233557888888888888899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHhhC---CCCCCHHHHHHHHHHHH----------
Q 007626 244 EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAF---EFFYDMGSF---GCSPDIVTYNTLISGLC---------- 307 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---g~~p~~~t~~~li~~~~---------- 307 (595)
+|+..|.+=++..+ .|...++-+..++.-.....+.+ .++...... ........|..++..+-
T Consensus 88 eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99888888777653 45666666666662111000000 001100000 00000112222222111
Q ss_pred hcCCHHHHHHHHHHHH-----------hcCCCCC------------C----------HhhHHHHHHHHHhcCChhHHHHH
Q 007626 308 RVNEVARGHELLKEVK-----------FKSEFSP------------D----------VVTYTSVISGYCKLGKMDKATGI 354 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~-----------~~~~~~p------------~----------~~~~~~ll~~~~~~g~~~~A~~l 354 (595)
...++..+.-.+.... ...+..| | ..-...+.+...+..+++.|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1111111111111100 0000001 0 11244566667777788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHH
Q 007626 355 YNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSS-------LIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------li~~~~~~g~~~~A~~l~~~ 427 (595)
+....+.. -+..-++....+|...|.+.+........++.|-. ...-|+. +..+|.+.++++.++..|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88877754 44555566667778888777777666666655422 1122222 33355566777888888877
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007626 428 MKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK 507 (595)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 507 (595)
.......|+... +....+++........-.+..- ..--..-...+.+.|++..|.+.|.++++.. +-|.
T Consensus 324 aLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da 392 (539)
T KOG0548|consen 324 ALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDA 392 (539)
T ss_pred HhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cchh
Confidence 655443333211 1222222222222222111111 1111111333445556666666666655553 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 508 VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
..|..-.-+|.+.|.+.+|+.=.+..++.. ++....|..-+.++....+++.|.+.|++.++..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555555555556666666655555555542 2333334444444445555555555555555544
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=3.8e-07 Score=89.12 Aligned_cols=226 Identities=12% Similarity=-0.009 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007626 311 EVARGHELLKEVKFKSEFSPD--VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEY 388 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 388 (595)
..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555555555433222222 2345555666666677777777776666643 3345666666666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007626 389 MRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL 468 (595)
Q Consensus 389 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (595)
.|++..+.. +-+..+|..+...+...|++++|.+.|+...+.. +.+. ........+...++.++|...+.+.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 776666543 1234556666666666777777777777666543 2222 11111112234456777777775544322
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007626 469 VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK---RC--K-PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD 542 (595)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 542 (595)
.++...+ . ......|+.+++ +.+..+.+. .. . .....|..+...+...|++++|+..|++.++.+ +||.
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 1221111 1 222234444333 233333321 00 0 123467777777778888888888888877754 3454
Q ss_pred HHHH
Q 007626 543 ITVN 546 (595)
Q Consensus 543 ~~~~ 546 (595)
.-+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4443
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.4e-05 Score=78.51 Aligned_cols=414 Identities=14% Similarity=0.104 Sum_probs=207.1
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHhccCCCCccCHHHHHH
Q 007626 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSC--IRAGKCDAAKGLLSQFRPGEVTMSTFMYNS 231 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 231 (595)
.+...+..-+.++.+.++|++|+.+.+.-... ..+...+ +=.+| .+.++.++|+..++-..+ .+..+...
T Consensus 44 dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L 115 (652)
T KOG2376|consen 44 DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLEL 115 (652)
T ss_pred CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcccHHHHHHHHhcccc----cchHHHHH
Confidence 34445555555666666666666444331110 0000010 12222 355666666666652221 12334444
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH---HHHH
Q 007626 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQG-LSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLI---SGLC 307 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li---~~~~ 307 (595)
-...+.+.|++++|+++|+.+.+++. ++ +...+++ +...+..-.+. + |......| ..+|..+. ..+.
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a~l~~~-~---~q~v~~v~-e~syel~yN~Ac~~i 186 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAAALQVQ-L---LQSVPEVP-EDSYELLYNTACILI 186 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHHhhhHH-H---HHhccCCC-cchHHHHHHHHHHHH
Confidence 45555566666666666666655443 11 1111111 00000000110 1 11111122 22333332 3345
Q ss_pred hcCCHHHHHHHHHHHHh--------cCCC----CCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----
Q 007626 308 RVNEVARGHELLKEVKF--------KSEF----SPDV-VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTF---- 370 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~--------~~~~----~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~---- 370 (595)
..|++.+|+++++.... .... ..+. ..--.|.-.+-..|+.++|..+|...+... ++|....
T Consensus 187 ~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~ 265 (652)
T KOG2376|consen 187 ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAV 265 (652)
T ss_pred hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHh
Confidence 67888888888877621 1100 0011 112234455667788888888888887765 3444222
Q ss_pred HHHHHHHHhcCCHHH--HHHHHHHHHhCCC----------CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 007626 371 NVLIDGFGKVGNMVS--AEYMRERMLSFGY----------LPDVVTF-SSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV 437 (595)
Q Consensus 371 ~~ll~~~~~~g~~~~--A~~~~~~m~~~g~----------~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 437 (595)
|.|+ ++....++-. +...++....... ....... +.++..| .+..+.+.++....... .|.
T Consensus 266 NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~- 339 (652)
T KOG2376|consen 266 NNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPE- 339 (652)
T ss_pred cchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-
Confidence 2222 2222222111 1111111111000 0001111 1222222 23344444444333222 333
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCH
Q 007626 438 YTFTILINALC--KENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVA--------EMEEKRCKPDK 507 (595)
Q Consensus 438 ~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~p~~ 507 (595)
..+.+++..+. +.....++.+++...-+....-...+.-..+......|+++.|.+++. .+.+.+..|-.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~ 419 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT 419 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH
Confidence 34444544432 233578888888888776544445677778888899999999999999 66666666655
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccc
Q 007626 508 VTFTILIIGHCMKGRMVEAISIFNKMLRI--GCAPD----DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKK 581 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 581 (595)
+ ..+...+.+.++.+.|..++.+.+.. .-.+. ..++.-+...-.+.|+.++|..+++++.+..+.+...+-.
T Consensus 420 V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~ 497 (652)
T KOG2376|consen 420 V--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ 497 (652)
T ss_pred H--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH
Confidence 4 45566677777766677777666641 11122 2344444555567899999999999999987777666666
Q ss_pred cccccccccccc
Q 007626 582 AVPLRTNTDIPV 593 (595)
Q Consensus 582 ~~~~~~~~~~~~ 593 (595)
.|..+...|+..
T Consensus 498 lV~a~~~~d~ek 509 (652)
T KOG2376|consen 498 LVTAYARLDPEK 509 (652)
T ss_pred HHHHHHhcCHHH
Confidence 665555555443
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=9.2e-07 Score=80.97 Aligned_cols=404 Identities=13% Similarity=0.061 Sum_probs=252.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHH-HHHHHH
Q 007626 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNS-LLNALV 237 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 237 (595)
+.+.+..+.+..++.+|++++..-.+.. +.+...++.+..+|....++..|...++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5566667788899999999999988875 447788899999999999999999999999775 344444432 345667
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQ--GLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARG 315 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 315 (595)
+.+.+.+|+++...|... ++...-..-+. .....+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999988642 22221111122 2345678888888888776433 555666666667789999999
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------CHH--------------
Q 007626 316 HELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP-------------SAV-------------- 368 (595)
Q Consensus 316 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-------------~~~-------------- 368 (595)
.+-|+...+-+|..|- ..|+..+. ..+.|+++.|+++..++++.|++. |+.
T Consensus 164 vqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 9999999988877764 56766554 457799999999999998877532 211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007626 369 -TFNVLIDGFGKVGNMVSAEYMRERMLS-FGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINA 446 (595)
Q Consensus 369 -~~~~ll~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~ 446 (595)
.+|.-...+.+.|+.+.|.+-+-.|.- .....|++|...+.-.- ..+++.+..+-+.-+...+ |....||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 122223345677888888888877742 22345777766554322 2344555555555555554 3456788889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007626 447 LCKENRLNDARRFLKQLKWNDLV-PKPFMYNPVIDGFCKA-GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 524 (595)
||+..-++.|-.++.+-.....+ .+...|+ |++++..+ -..++|.+-++.+... +.-......+-+.- .+..+-+
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe-~r~~~dd 396 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQE-ARHNRDD 396 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHhcccH
Confidence 99999999998887653222111 1233333 34454444 3677776665554432 00000011111111 1111211
Q ss_pred H----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccccc
Q 007626 525 E----AISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAV 583 (595)
Q Consensus 525 ~----A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 583 (595)
+ |++-+++.++. -....-+-.+.|++..++..+.++|..-.+ ....-+.|+..+
T Consensus 397 ~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve-fC~ehd~WkLNv 454 (459)
T KOG4340|consen 397 EAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE-FCNDHDVWKLNV 454 (459)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh-hhcccceeeecc
Confidence 2 22222222221 011222334567888999999999987664 334445565443
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.1e-05 Score=77.28 Aligned_cols=288 Identities=11% Similarity=0.015 Sum_probs=210.8
Q ss_pred cCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 007626 239 QNNADEAVYMFKEYFRLY-SQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVT-YNTLISGLCRVNEVARGH 316 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~ 316 (595)
.++...|...+--+.... .+-|+.....+...+...|+.++|...|++.... .|+..+ .....-.+...|+++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 344444444433332222 3457778889999999999999999999988743 343322 222223345778888888
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007626 317 ELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
.+...+.... .-....|..-+..+....+++.|+.+-++.++.+ +.+...|-.-...+...|+.++|.-.|+..+..
T Consensus 287 ~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 287 ALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 8888876543 2334455555666677889999999999988764 345556655566778899999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhCCCCCC-Hh
Q 007626 397 GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI-NALC-KENRLNDARRFLKQLKWNDLVPK-PF 473 (595)
Q Consensus 397 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~ 473 (595)
. +.+...|.-|+..|...|++.+|.-+-+...+. ++.+..+.+.+. ..+. ....-++|.++++...+.. |+ ..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHH
Confidence 3 347789999999999999999999887776554 345566665553 2232 2333578889988877654 43 45
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007626 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
..+.+...+...|..+.++.++++.... .||....+.|...+...+.+.+|...|...+..+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6778888899999999999999998875 6899999999999999999999999999988754
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=3.4e-06 Score=85.29 Aligned_cols=198 Identities=11% Similarity=0.002 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007626 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYS-QPDT-WTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
..|..+...+...|+.+.+...+.+..+... .++. .........+...|++++|.+++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3444445555555556555555555443322 1111 111122334455566666666666655431 222222221 11
Q ss_pred HHH----hcCCHHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007626 305 GLC----RVNEVARGHELLKEVKFKSEFSPD-VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 305 ~~~----~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
.+. ..+..+.+.+.+.... . ..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA--P-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC--c-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 111 1233444444443311 1 1222 2333445556666777777777777776653 3344555666666777
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007626 380 VGNMVSAEYMRERMLSFGY-LPDV--VTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
.|++++|...+++..+... .++. ..|..+...+...|++++|..++++...
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7777777777766655321 1221 2344566666777777777777777643
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=3.1e-06 Score=85.57 Aligned_cols=305 Identities=11% Similarity=0.015 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH
Q 007626 261 TWTFNILIQGLSRIGEVKKAFEFFYDMGSFG-CSPDIVT-YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV 338 (595)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 338 (595)
...|..+...+...|+.+.+.+.+....+.. ..++... .......+...|++++|.+.+++..... +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-
Confidence 4566677777777888888777666655321 1222211 1222334567899999999999987654 334444442
Q ss_pred HHHHH----hcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007626 339 ISGYC----KLGKMDKATGIYNEMNSCGIKPS-AVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC 413 (595)
Q Consensus 339 l~~~~----~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 413 (595)
...+. ..+..+.+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 22222 245555555555541 122233 3444566678899999999999999999874 345677888899999
Q ss_pred HcCCHHHHHHHHHHHhhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhH-H--HHHHHHHHcC
Q 007626 414 RNGQLNQGLKLCDEMKGKNL-SPNV--YTFTILINALCKENRLNDARRFLKQLKWNDLVPK-PFMY-N--PVIDGFCKAG 486 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~-~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~-~--~li~~~~~~g 486 (595)
..|++++|...+++...... .++. ..|..+...+...|++++|..++++.......+. .... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999876532 2332 3455788889999999999999999865433112 1111 1 2333344445
Q ss_pred CHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHh
Q 007626 487 NVDEANVI--VAEMEEKRC--KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCA---P-----DDITVNSLISCLLK 554 (595)
Q Consensus 487 ~~~~A~~l--~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p-----~~~~~~~l~~~~~~ 554 (595)
..+.+.++ +........ ............++...|+.++|..+++.+...... - ..........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 43333333 211111111 111122235666778899999999999998763212 0 12222333445679
Q ss_pred cCCHHHHHHHHHHHHhc
Q 007626 555 GGMPNEAFRIMQRASED 571 (595)
Q Consensus 555 ~g~~~~A~~~~~~~~~~ 571 (595)
.|++++|.+.+..+...
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=3.4e-07 Score=89.45 Aligned_cols=93 Identities=17% Similarity=-0.053 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007626 194 IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR 273 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 273 (595)
|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|++.++..+ .+..+|..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4444444444455555554444444432 22344444455555555555555555555444332 133344444444444
Q ss_pred cCCHHHHHHHHHHHh
Q 007626 274 IGEVKKAFEFFYDMG 288 (595)
Q Consensus 274 ~g~~~~A~~~~~~m~ 288 (595)
.|++++|.+.|+...
T Consensus 145 ~g~~~eA~~~~~~al 159 (296)
T PRK11189 145 GGRYELAQDDLLAFY 159 (296)
T ss_pred CCCHHHHHHHHHHHH
Confidence 455555555554444
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=6.4e-06 Score=94.33 Aligned_cols=338 Identities=10% Similarity=-0.014 Sum_probs=210.8
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CCCH--HHHHHHHHH
Q 007626 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG--C----SPDI--VTYNTLISG 305 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~--~t~~~li~~ 305 (595)
..+...|+++.+..+++.+.......+..........+...|++++|..++......- . .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3444567777777776654221111222233444556677899999999888775321 0 1111 112223344
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHH
Q 007626 306 LCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGKMDKATGIYNEMNSCGI---KP--SAVTFNVLIDG 376 (595)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~---~p--~~~~~~~ll~~ 376 (595)
+...|++++|...+++...... ..+ ....+.+...+...|++++|...+++.....- .+ ...++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 5678999999999988765321 111 13445666677889999999999988864211 11 12345566777
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCC--CHHHHHHHHH
Q 007626 377 FGKVGNMVSAEYMRERMLSF----GYL--P-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK--NLSP--NVYTFTILIN 445 (595)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p--~~~~~~~ll~ 445 (595)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999988876542 211 1 2234455666777889999999998876543 1112 2334445566
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC--CCCCHh--h--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 007626 446 ALCKENRLNDARRFLKQLKWND--LVPKPF--M--YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK---VTFTILIIG 516 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~--~~p~~~--~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~ 516 (595)
.+...|+.++|...+....... ...... . ....+..+...|+.+.|.+++............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999888875421 111111 0 111224455678999999988776543211111 113456667
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 517 HCMKGRMVEAISIFNKMLRI----GCAPD-DITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+...|++++|..++++.... |...+ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999988763 32222 2456677888999999999999999988754
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=1.1e-06 Score=77.94 Aligned_cols=196 Identities=14% Similarity=0.086 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007626 335 YTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414 (595)
Q Consensus 335 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 414 (595)
...|.-+|...|++..|..-+++.++.+ +-+..+|..+...|-+.|..+.|.+.|++..+.. +-+..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3444455556666666666666655543 2334455555555555566555555555555542 1233445555555555
Q ss_pred cCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 007626 415 NGQLNQGLKLCDEMKGKN-LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 415 ~g~~~~A~~l~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (595)
.|++++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.|++..+.+.. .+.+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 555555555555554431 1112234444544455555555555555555554422 23344455555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 494 IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 494 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
+++.....+. ++..+....|..-...|+.+.+-++=..+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555554433 455555555555555555555555444443
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=1.1e-05 Score=92.39 Aligned_cols=339 Identities=12% Similarity=0.037 Sum_probs=217.0
Q ss_pred HHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC------CC--HHHHHHHHHH
Q 007626 199 SSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ------PD--TWTFNILIQG 270 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------~~--~~~~~~li~~ 270 (595)
......|+++.+..+++.+.......+..........+...|++++|..++......-.. +. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345566888888888777632211122223344555666789999999999887543111 11 1122233345
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHhhHHHHHHHH
Q 007626 271 LSRIGEVKKAFEFFYDMGSFGCSPDI----VTYNTLISGLCRVNEVARGHELLKEVKFKSE----FSPDVVTYTSVISGY 342 (595)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~p~~~~~~~ll~~~ 342 (595)
+...|++++|...+++....--..+. ...+.+...+...|++++|...+++...... ......++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66889999999999987653111121 2345566677889999999999988764211 111123455667788
Q ss_pred HhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHH
Q 007626 343 CKLGKMDKATGIYNEMNSC----GIK--P-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG--YLP--DVVTFSSLIDG 411 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~p--~~~~~~~li~~ 411 (595)
...|++++|...+++..+. +.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998887552 211 1 22334556667778899999999988875421 112 23345556677
Q ss_pred HHHcCCHHHHHHHHHHHhhCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHH
Q 007626 412 YCRNGQLNQGLKLCDEMKGKN--LSPNVY--TF--TILINALCKENRLNDARRFLKQLKWNDLVPK---PFMYNPVIDGF 482 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~--~~p~~~--~~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~ 482 (595)
+...|+.++|...+.+..... ...... .. ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 889999999999988875421 111111 10 1122444568899999999877654221111 11245677788
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007626 483 CKAGNVDEANVIVAEMEEK----RCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
...|++++|..++++.... |..++ ..+...+..++...|+.++|...+.++.+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999987653 32222 2456677788889999999999999998854
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=5.7e-06 Score=85.45 Aligned_cols=390 Identities=16% Similarity=0.115 Sum_probs=245.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-HH
Q 007626 185 DGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDT-WT 263 (595)
Q Consensus 185 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~ 263 (595)
..+..|...|..+.-+....|++..+.+.|++....- -.....|+.+...|...|.-..|+.++++-......|+. ..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455688888888888889999999999998887643 345677888888888888888888888887665433433 33
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHhh--CCC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCC
Q 007626 264 FNILIQGLS-RIGEVKKAFEFFYDMGS--FGC--SPDIVTYNTLISGLCRV-----------NEVARGHELLKEVKFKSE 327 (595)
Q Consensus 264 ~~~li~~~~-~~g~~~~A~~~~~~m~~--~g~--~p~~~t~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~ 327 (595)
+...-..|. +.+..++++.+-.+... .+. ......|-.+.-+|... ....++.+.+++....++
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333 34667777776666654 111 11233444444444321 224567777777776665
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007626 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSS 407 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 407 (595)
..|++..|-.+ -|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+.- .-|......
T Consensus 476 ~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 476 TDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 55555544433 466778889999999888887556778888888888888899999988888766531 011111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC---------------------C-------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007626 408 LIDGYCRNGQLNQGLKLCDEMKGK---------------------N-------LSPNVYTFTILINALCKENRLNDARRF 459 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~---------------------~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (595)
-+..-..-++.++++.....+... | ..-...++..+..-.. -+.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccc
Confidence 122222345555555444333211 0 0001112222211111 000000000
Q ss_pred HHHHHhCCCCC--C------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007626 460 LKQLKWNDLVP--K------PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 460 ~~~~~~~~~~p--~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
.. +......| + ...|......+.+.++.++|.--+.+..... +-....|......+...|...+|.+.|.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 11111112 2 2245667778889999999998888887652 3456677777778888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCCcccccc
Q 007626 532 KMLRIGCAPDDITVNSLISCLLKGGMPNEAFR--IMQRASEDQNLQLPSWKKAV 583 (595)
Q Consensus 532 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~ 583 (595)
.....+ +.+.....++..++.+.|+..-|.. ++..+.+.++...+.|+..-
T Consensus 709 ~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 709 VALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 988754 4455788899999999999888888 99999999999999998763
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.5e-05 Score=79.74 Aligned_cols=405 Identities=13% Similarity=0.159 Sum_probs=195.4
Q ss_pred hhhcCCCCchhHHHHHHhcCCchHHHHHH-HHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC--CCCCH
Q 007626 115 RYLCEKLSPLNSLEVIKRLDNPKLGLKFL-EFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDG--HLPNS 191 (595)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~a~~~~-~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~ 191 (595)
+++..+-+++.+..||..-+.. ..++. .-.+.-.+-..|++.-...+.++...+-..+-+++++++.-.. +.-+.
T Consensus 944 RYlv~R~D~~LW~~VL~e~n~~--rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~ 1021 (1666)
T KOG0985|consen 944 RYLVERSDPDLWAKVLNEENPY--RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENR 1021 (1666)
T ss_pred HHHHhccChHHHHHHHhccChH--HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccch
Confidence 3444455555555555332111 11111 1222333344566677777778888888888888887776532 12222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007626 192 PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
..-+.|+-...+ .+.....+..+++...+. |+ +.......+-+++|..+|++. ..+..+.+.||.
T Consensus 1022 nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie-- 1086 (1666)
T KOG0985|consen 1022 NLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE-- 1086 (1666)
T ss_pred hhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH--
Confidence 233333333222 233444555555443321 11 233344455566666666554 234444444443
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 007626 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKA 351 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 351 (595)
..+.++.|.++-++.. .+..|..+..+-...|.+.+|++-|-+. .|...|..++....+.|.+++-
T Consensus 1087 -~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1087 -NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred -HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHH
Confidence 2244444444443322 3345555555555555555555544332 2444555666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007626 352 TGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 352 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
.+++....+..-.|... +.|+-+|++.+++.+.+.++. -|+......+.+-|...|.++.|.-+|.....-
T Consensus 1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~ 1223 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNF 1223 (1666)
T ss_pred HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhH
Confidence 66555555444333322 345555566555555444332 244444444444444555554444444322100
Q ss_pred --------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007626 432 --------------------NLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 432 --------------------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
.-..+..||..+-.+|...+.+.-| +|...++.....-...|+..|-..|-+++-
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 0001233444444444333333222 222223334445566677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007626 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
+.+++...... +.....|+-|.-.|.+ =++++..+.++-... ....-.+++++-++.-|.+..-++.+..+.
T Consensus 1299 Isl~Ea~LGLE-RAHMgmfTELaiLYsk-ykp~km~EHl~LFws------RvNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1299 ISLLEAGLGLE-RAHMGMFTELAILYSK-YKPEKMMEHLKLFWS------RVNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHHhhhchh-HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77776654221 1233445555555544 233333333333322 112235677888888888887777666554
Q ss_pred C
Q 007626 572 Q 572 (595)
Q Consensus 572 ~ 572 (595)
+
T Consensus 1371 D 1371 (1666)
T KOG0985|consen 1371 D 1371 (1666)
T ss_pred h
Confidence 3
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=2.6e-07 Score=89.03 Aligned_cols=250 Identities=14% Similarity=0.089 Sum_probs=119.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh
Q 007626 269 QGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM 348 (595)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 348 (595)
+-+.-.|.+..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~--~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS--SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS--SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC--ChhHHHHHHHHHHHhCccch
Confidence 33445566666665554 222111122334445556666667655433 3332222 45544444444433332344
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007626 349 DKATGIYNEMNSCGIKP-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
+.++.-+++....+..+ +..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444443333222221 2222222233455566666666665432 2445555566666666666666666666
Q ss_pred HhhCCCCCCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007626 428 MKGKNLSPNVYTFTILINALCK--E--NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~--~--g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
|.+.. .| .+...+..++.. . +.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+.
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 65542 22 233334443322 1 2466666666665543 344566666666666666666666666666655432
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 007626 504 KPDKVTFTILIIGHCMKGRM-VEAISIFNKMLR 535 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 535 (595)
-+..++..++.+....|+. +.+.+++.++..
T Consensus 233 -~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 -NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 2445555555555555655 445555555554
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00023 Score=70.95 Aligned_cols=415 Identities=10% Similarity=0.055 Sum_probs=248.0
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007626 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
+-|..+|+.||+-+..+ .++++.++++++...- +-.+..|..-|..-.+.++++..+.+|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 35889999999988777 8999999999998753 6677889999999999999999999999987643 356666666
Q ss_pred HHHHHHc-CCHhH----HHHHHHHH-HHcCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHhhCCCCC--
Q 007626 233 LNALVKQ-NNADE----AVYMFKEY-FRLYSQP-DTWTFNILIQG---------LSRIGEVKKAFEFFYDMGSFGCSP-- 294 (595)
Q Consensus 233 i~~~~~~-g~~~~----A~~~~~~m-~~~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-- 294 (595)
++--.+. |+... ..+.|+-. .+.|..+ .-..|+..+.- |..+.+++...++|+++..--+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6544432 33222 22333332 2333221 22234444432 334446677778888876421110
Q ss_pred ----CHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHhc-CCCCCCH---------------hhHHHHHHHHHhcCC
Q 007626 295 ----DIVTYNTLISGL-------CRVNEVARGHELLKEVKFK-SEFSPDV---------------VTYTSVISGYCKLGK 347 (595)
Q Consensus 295 ----~~~t~~~li~~~-------~~~g~~~~A~~~~~~~~~~-~~~~p~~---------------~~~~~ll~~~~~~g~ 347 (595)
|-.+|..-|... -+...+-.|.++++++... .|+.... ..|..+|..=-..+.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111121111111 1223455666666665421 0111111 113333322111110
Q ss_pred ------h--hHHHHHHHHH-HHCCCCCCHHHH-----HHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHH
Q 007626 348 ------M--DKATGIYNEM-NSCGIKPSAVTF-----NVLIDGFGKVGN-------MVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 348 ------~--~~A~~l~~~m-~~~g~~p~~~~~-----~~ll~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
+ ....-.+++. .-.+..|+.... ...-+.+...|+ .+++..++++.++.-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111122221 122333332111 111122333343 355566666665543333444554
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 007626 407 SLIDGYCRNG---QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVP-KPFMYNPVIDGF 482 (595)
Q Consensus 407 ~li~~~~~~g---~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~ 482 (595)
.+.+.--..- ..+.....++++...-..--..+|..+++.-.+..-++.|..+|.+..+.+..+ ++.++++++..|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 4443222222 255566666666554322234578888888888889999999999999887776 778888888887
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 007626 483 CKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD--ITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~ 560 (595)
|. ++.+-|.++|+--.++ ...+..--...+.-+...++-..|..+|++.+..+++++. .+|..++..-..-|+...
T Consensus 413 cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred hc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 74 7888999999886654 2223444467777788889999999999999988666654 689999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 007626 561 AFRIMQRASEDQN 573 (595)
Q Consensus 561 A~~~~~~~~~~~~ 573 (595)
++++-++.....+
T Consensus 491 i~~lekR~~~af~ 503 (656)
T KOG1914|consen 491 ILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcc
Confidence 9999888777665
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=3.2e-07 Score=88.36 Aligned_cols=224 Identities=13% Similarity=0.117 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 007626 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGY 342 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 342 (595)
....+.+++...|+.+.++ .++.... .|.......+...+...++-+.+..-+++.........+..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444555666666555433 2222222 44444444343333222334444444443332221111222222223344
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCH
Q 007626 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC----RNGQL 418 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~ 418 (595)
...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+.. .|. +...+..++. ..+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhH
Confidence 5566677766666432 344555566667777777777777777776542 332 2333333332 23357
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH-HHHHHHHHH
Q 007626 419 NQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV-DEANVIVAE 497 (595)
Q Consensus 419 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~ 497 (595)
.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++.+....+.. ++.+...++-.....|+. +.+.+++.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 7777777776554 4567777777777777777777777777776655533 455666666666666665 566677777
Q ss_pred HHHC
Q 007626 498 MEEK 501 (595)
Q Consensus 498 m~~~ 501 (595)
+...
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 6654
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=4.2e-05 Score=71.74 Aligned_cols=317 Identities=13% Similarity=0.100 Sum_probs=157.5
Q ss_pred cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007626 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL---IQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYN 300 (595)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (595)
.++.-.--+...+...|++.+|+.-|...++. |+..|.++ ...|...|+...|+.=+...++. +||-..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 34444555777777888888888888887653 33334433 45677788888888777777743 66643322
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007626 301 -TLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 301 -~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
.-...+.+.|.++.|..-|+.+.... |+..+- ..++.+.-..++-. .....+..+..
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~---~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~ 167 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE---PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASG 167 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC---CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhc
Confidence 22345667888888888888877654 321100 00000000000000 01112222333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007626 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRF 459 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (595)
.|+...|+.....+++.. +.|...|..-..+|...|++..|+.=++...+.. ..+..++.-+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 444444444444444431 2344444444444444444444444444433332 22333333444444444444444444
Q ss_pred HHHHHhCCCCCCHhh----HHH---H------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 007626 460 LKQLKWNDLVPKPFM----YNP---V------IDGFCKAGNVDEANVIVAEMEEKRCKPDKV---TFTILIIGHCMKGRM 523 (595)
Q Consensus 460 ~~~~~~~~~~p~~~~----~~~---l------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~li~~~~~~g~~ 523 (595)
.++-.+.+ ||... |-. + +....+.+++.++.+-.+...+........ .+..+-.++...|++
T Consensus 246 iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 44443322 22110 100 0 111223455555665555555542221122 233344455556677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
-+|++...+.++.. +.|..++---..+|.-..++++|+.-++++.+-..
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 77777777666532 23356666666677666777777777777665543
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=3e-05 Score=72.68 Aligned_cols=304 Identities=13% Similarity=0.042 Sum_probs=207.7
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHH-HHHH
Q 007626 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY-NSLL 233 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li 233 (595)
++.-.--+...+...|++.+|+.-|....+.+ +.+-.++-.-...|...|+-..|+.-+.++.+. .||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 45556667788888999999999998888754 333344445556788888888888888888774 4554322 2235
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCC--HHH------------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007626 234 NALVKQNNADEAVYMFKEYFRLYSQPD--TWT------------FNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY 299 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 299 (595)
..+.+.|.++.|..-|+.+++..+..+ ... ....+..+...|+...|+.....+++.. +-|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 667789999999999999888654211 111 1233445667788889999888888642 3367777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----H--
Q 007626 300 NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV----L-- 373 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~----l-- 373 (595)
..-..+|...|++..|+.-++...+.. ..+...+.-+-..+...|+.+.++...++-++. .||...+-. |
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 888888999999999988877776543 345666777777888889999999888888774 466543211 1
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007626 374 -------IDGFGKVGNMVSAEYMRERMLSFGYLPDVV---TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTIL 443 (595)
Q Consensus 374 -------l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 443 (595)
+......++|.++..-.+...+........ .+..+-.++...|++.+|+....+.++.. +.|..++.--
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dR 347 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 112234456666666666666553221222 33445556667778888888888877653 4457777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC
Q 007626 444 INALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
..+|.-...++.|+.-|+...+.+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcC
Confidence 788887788888888888877655
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.2e-06 Score=77.50 Aligned_cols=327 Identities=13% Similarity=0.123 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHH
Q 007626 228 MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNT-LISGL 306 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-li~~~ 306 (595)
-+++.+..+.+..++++|++++....+..+ .+......|..+|....++..|-..|+++... .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 466777778889999999999988877654 47788888999999999999999999998754 566655543 24567
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007626 307 CRVNEVARGHELLKEVKFKSEFSPDVVTYTSV--ISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMV 384 (595)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l--l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 384 (595)
.+.+.+..|+.+...|... ++...-..- .......+++..+..+.++....| +..+.+...-...+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 7889999999999888642 222222222 223356788888888888775432 4445555555567899999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-------------CHH--------HHHH
Q 007626 385 SAEYMRERMLSF-GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP-------------NVY--------TFTI 442 (595)
Q Consensus 385 ~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-------------~~~--------~~~~ 442 (595)
+|.+-|+...+- |.. ....|+.-+ +..+.|+++.|++...+++++|++. |.. .-+.
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999988774 444 446777655 4556789999999999999998752 211 1122
Q ss_pred HHH-------HHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007626 443 LIN-------ALCKENRLNDARRFLKQLKWN-DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 443 ll~-------~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
++. .+.+.++++.|.+-+-.|.-+ ....|+.|...+.-.-. .+++.+..+-+.-+.+.. +-...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 333 234677888888877776432 22345566555433222 234444444444444442 23567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007626 515 IGHCMKGRMVEAISIFNKMLRIGCA-PDDITVNSLISCLL-KGGMPNEAFRIMQRAS 569 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 569 (595)
-.||++.-++-|-.++-+--...+. .+...| .|++++. ..-..++|.+-++...
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8889988888888877553322111 222333 3444443 3456777777666554
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3.7e-05 Score=79.83 Aligned_cols=229 Identities=16% Similarity=0.184 Sum_probs=109.5
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC-CC--------ccCHHHHHHHHHHH
Q 007626 166 LCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG-EV--------TMSTFMYNSLLNAL 236 (595)
Q Consensus 166 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~--------~~~~~~~~~li~~~ 236 (595)
|..-|+.+.|.+-.+.++.. .+|..+.+.|.+.+++|-|.-.+..|... |. .++ ..-.......
T Consensus 738 yvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 44455555555555444332 25555555555555555544444443221 00 011 1111122222
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007626 237 VKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGH 316 (595)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 316 (595)
...|.+++|+.+|.+-.+ |..|=..|...|.+++|+++-+.-.... =..||.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 344556666666655543 2233344555566666655544221111 1123333333333444555555
Q ss_pred HHHHHHH----------hcC--------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 317 ELLKEVK----------FKS--------EFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFG 378 (595)
Q Consensus 317 ~~~~~~~----------~~~--------~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~ 378 (595)
+.|++.. ... .-..|...|.-....+-..|+++.|+.+|....+ |-.+++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 5443321 000 0012334444445555566777777777766553 344555566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007626 379 KVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
-.|+.++|.++-++- -|......+.+.|...|++.+|..+|.+.
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666666666655442 24455556666666667766666666544
No 99
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=1.5e-05 Score=77.96 Aligned_cols=231 Identities=10% Similarity=0.009 Sum_probs=137.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--H
Q 007626 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG-NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQL--N 419 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~ 419 (595)
...++.++|+.++.++++.. +-+...|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 34456667777776666542 223334444444445555 4567777777666653 22444555444444445542 5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---CC----HHHHH
Q 007626 420 QGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA---GN----VDEAN 492 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~ 492 (595)
+++.+++++.+.. +-|..+|+....++...|+++++++.++++++.++. +..+|+.....+.+. |. .+++.
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 6677777776654 446667777777777777777777777777776644 556666665555444 22 24566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 007626 493 VIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGG------------ 556 (595)
Q Consensus 493 ~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------------ 556 (595)
.+..++++.. +-|...|+.+...+.. .++..+|...+.+..+.+ +.+...+..|++.|+...
T Consensus 204 ~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 6666666553 2355667666666665 234566777777766543 445667777777777532
Q ss_pred ------CHHHHHHHHHHHHhcCCCCCCcc
Q 007626 557 ------MPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 557 ------~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
..++|.++++.+.+.+++...-|
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 34678888888765555444333
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=0.00018 Score=71.77 Aligned_cols=366 Identities=12% Similarity=0.054 Sum_probs=221.4
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007626 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
++|-..|..-..+|...|++++|++=-.+-.+.. |.-+..|.....+..-.|++++|+..|.+-.+.. +.+...++-+
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl 110 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGL 110 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhH
Confidence 3577889999999999999999988777766654 4556789999999999999999999999988764 4466667777
Q ss_pred HHHHHHcCCHhHHH---HHHHHHHHcC---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHH-----hhCC
Q 007626 233 LNALVKQNNADEAV---YMFKEYFRLY---SQPDTWTFNILIQGLSRI----------GEVKKAFEFFYDM-----GSFG 291 (595)
Q Consensus 233 i~~~~~~g~~~~A~---~~~~~m~~~~---~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-----~~~g 291 (595)
..++.......+.. .++..+...- .......|..++..+-+. .++..|...+... ...|
T Consensus 111 ~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~ 190 (539)
T KOG0548|consen 111 AQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASG 190 (539)
T ss_pred HHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccc
Confidence 77762211000000 0111111000 000111233333222111 1111221111110 0001
Q ss_pred -------CCCC----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 007626 292 -------CSPD----------------------IVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGY 342 (595)
Q Consensus 292 -------~~p~----------------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 342 (595)
..|. ..-...+..+..+..+++.|++-+...... ..++.-++....+|
T Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 191 IEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVY 267 (539)
T ss_pred cccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHH
Confidence 1110 112345666777778888888888877653 24556667778888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007626 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFN-------VLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN 415 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-------~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 415 (595)
...|.+.++...-....+.|-. ...-|+ .+..+|.+.++++.+...|.+.......|+. ..+.
T Consensus 268 ~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~l 337 (539)
T KOG0548|consen 268 LERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKL 337 (539)
T ss_pred HhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHH
Confidence 9999988888877777666521 122222 2344667778889999999887654333332 2223
Q ss_pred CCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 007626 416 GQLNQGLKLCDEMKGKNLSPNV-YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVI 494 (595)
Q Consensus 416 g~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 494 (595)
...+++....+...-.+ |.. .-...-...+.+.|++..|+..|.+++..++ -|...|....-+|.+.|.+..|++=
T Consensus 338 k~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 338 KEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHH
Confidence 34455555444433222 221 1122225566788888888888888888773 4788888888888888888888887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007626 495 VAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 495 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
-+...+.. ++....|..=..++....+++.|.+.|++.++.+
T Consensus 415 a~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 415 AKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777662 2233345444555556678888888888887754
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00062 Score=72.65 Aligned_cols=368 Identities=14% Similarity=0.115 Sum_probs=185.4
Q ss_pred hcCCCCchhHHHHHHhc---CCchHHHHHHHHhh-hCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH
Q 007626 117 LCEKLSPLNSLEVIKRL---DNPKLGLKFLEFSR-VNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSP 192 (595)
Q Consensus 117 ~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~-~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 192 (595)
+.+.-+|+.+....+.+ .-|..-..+.+-.. ....++-+...-|.||-...+..+ ....+..+++...+ .|+
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyD-a~~-- 1053 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYD-APD-- 1053 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCC-chh--
Confidence 44455666666666555 33444444443332 233455566666777666555443 44555555554433 222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007626 193 MIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLS 272 (595)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 272 (595)
+...+...+-+++|..+|++... +..+.+.|+.- -+..+.|.+.-++. -....|..+..+-.
T Consensus 1054 ----ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1054 ----IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQL 1115 (1666)
T ss_pred ----HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHH
Confidence 23344455566666666665432 33333333332 24455555444443 23334555555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 007626 273 RIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 352 (595)
+.|.+.+|.+-|-+.. |+..|..+++...+.|.+++-.+.+....++. -.|. .=+.||-+|++.++..+..
T Consensus 1116 ~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~--id~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPY--IDSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred hcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCcc--chHHHHHHHHHhchHHHHH
Confidence 5555555555543321 44555555555555666655555554444332 1222 2234555555555554443
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCCHHHHHHHHHHH
Q 007626 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG--------------------YLPDVVTFSSLIDGY 412 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~li~~~ 412 (595)
+++ .-||......+.+-|...|.++.|.-+|..+.... -..+..+|..+-.+|
T Consensus 1187 ~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1187 EFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFAC 1259 (1666)
T ss_pred HHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 332 12454444455555555555555544443211100 011334444444444
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 007626 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEAN 492 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (595)
...+.+.-| +|-..++-....-..-++..|-..|-+++.+.+++...... ...-..|+.|.-.|.+- ++++..
T Consensus 1260 vd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~ 1332 (1666)
T KOG0985|consen 1260 VDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMM 1332 (1666)
T ss_pred hchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHH
Confidence 443333222 23223333444556778999999999999999988765322 12345677777777765 344444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 493 VIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 493 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+.++-.-.+ .-.--+|.++-+..-+.|..-++.+-.+
T Consensus 1333 EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1333 EHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444333322 1123467777777777777766665543
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=5.4e-06 Score=82.99 Aligned_cols=251 Identities=14% Similarity=0.059 Sum_probs=148.7
Q ss_pred HHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 201 CIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKA 280 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (595)
+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++.++..+ -|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 446666777777777766654 44666777777777777777777777777776654 3566666677777777777777
Q ss_pred HHHHHHHhhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 007626 281 FEFFYDMGSFGCS--------PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 281 ~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 352 (595)
+..++.-+....+ ++...-.. ..+.....+....++|-++....+..+|......|.-.|.-.|++++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7766665432100 00000000 1122223344455555555555444466666667776777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-
Q 007626 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV-VTFSSLIDGYCRNGQLNQGLKLCDEMKG- 430 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~- 430 (595)
+.|+..+... +-|...||.|...++...+.++|+.-|.+..+. .|.- .+...|.-.|...|.+++|.+.|-..+.
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 7777777643 345566777777777777777777777777765 3432 2333345566777777777776654322
Q ss_pred --C------CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007626 431 --K------NLSPNVYTFTILINALCKENRLNDARR 458 (595)
Q Consensus 431 --~------~~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (595)
. ...++...|..|=.++.-.++.|-+..
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 112234566666666666666664443
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.62 E-value=0.00013 Score=74.86 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=22.5
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 007626 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEY 252 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (595)
.|..|.+.|.+..|......-.. +..+..+...+..++.+..-+++|-.+|+++
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 34455555555554443221111 1223334444444444444444444444443
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=7.6e-06 Score=77.35 Aligned_cols=187 Identities=12% Similarity=0.036 Sum_probs=118.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---
Q 007626 365 PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD-V---VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV--- 437 (595)
Q Consensus 365 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--- 437 (595)
.....+..+...+...|++++|...++++.... |+ . ..+..+..++...|++++|...++++.+.. +.+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 345566667777777888888888887776643 22 1 355666777777888888888888877653 1111
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007626 438 YTFTILINALCKE--------NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVT 509 (595)
Q Consensus 438 ~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 509 (595)
.++..+..++.+. |++++|.+.++.+....+. +...+..+..... .... . ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~--------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------H--------HHH
Confidence 2344445555443 5677777777777655422 2222222111100 0000 0 001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 510 FTILIIGHCMKGRMVEAISIFNKMLRIG--CAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
...+...+.+.|++++|+..+++.++.. -+.....+..++.++.+.|++++|..+++.+..+++
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1245567889999999999999998752 123457888999999999999999999999887764
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=0.00088 Score=70.04 Aligned_cols=404 Identities=16% Similarity=0.087 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-C-------C-CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC
Q 007626 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSD-G-------H-LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS 225 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-~-------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 225 (595)
+-.+|..|.+.+.+..+++-|.-.+..|... | . .++ .+-..+.......|.+++|..+|++.++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 5668999999999999999998888777541 1 0 122 22233333445778888999888887653
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----------hCC----
Q 007626 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG----------SFG---- 291 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~g---- 291 (595)
..|=..|-..|.+++|.++-+.--+.. =..||..-...+-..++.+.|++.|++.. ...
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 223344555677777777665432211 12345555555556666666666665431 110
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------------CCCCCHhhHHHHHHHHHhcCC
Q 007626 292 -----CSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKS-------------------EFSPDVVTYTSVISGYCKLGK 347 (595)
Q Consensus 292 -----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~p~~~~~~~ll~~~~~~g~ 347 (595)
-..|...|.-....+-..|+++.|+.++......- .-..|......|...|-..|+
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 01123333434444445666666666665543211 012456677788899999999
Q ss_pred hhHHHHHHHHHHH----------CCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHH-
Q 007626 348 MDKATGIYNEMNS----------CGIKPSAVTFN-------------------------VLIDGFGKVGNMVSAEYMRE- 391 (595)
Q Consensus 348 ~~~A~~l~~~m~~----------~g~~p~~~~~~-------------------------~ll~~~~~~g~~~~A~~~~~- 391 (595)
+.+|...|.+... .+++ ...+| ..+..|-+.|.+.+|+++--
T Consensus 983 v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~ 1060 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFR 1060 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHh
Confidence 9999999988743 2211 11111 12234455555555544321
Q ss_pred -------HHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh----------hCCC----------------CCC
Q 007626 392 -------RMLSFGY--LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK----------GKNL----------------SPN 436 (595)
Q Consensus 392 -------~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----------~~~~----------------~p~ 436 (595)
+++...+ ..|+...+...+-++...++++|..++-... ..++ .|+
T Consensus 1061 tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~ 1140 (1416)
T KOG3617|consen 1061 TQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPN 1140 (1416)
T ss_pred hcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCcc
Confidence 1111122 2355566666666666666666665543211 0111 122
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHH----------HhCC-----------------------------CCCCHh
Q 007626 437 V----YTFTILINALCKENRLNDARRFLKQL----------KWND-----------------------------LVPKPF 473 (595)
Q Consensus 437 ~----~~~~~ll~~~~~~g~~~~A~~~~~~~----------~~~~-----------------------------~~p~~~ 473 (595)
. .....+...|.+.|.+..|-+-|.+. .+.| ...++.
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq 1220 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQ 1220 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChH
Confidence 2 34555667778888877766544331 2222 112222
Q ss_pred hH-------------HHHHHHHHHc---------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------
Q 007626 474 MY-------------NPVIDGFCKA---------------GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM------ 519 (595)
Q Consensus 474 ~~-------------~~li~~~~~~---------------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~------ 519 (595)
+. ..|...|..+ |-.++|.+.+.++..+. -....|+.|-.-...
T Consensus 1221 ~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~ 1298 (1416)
T KOG3617|consen 1221 TMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLR 1298 (1416)
T ss_pred HHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHH
Confidence 22 2333322211 23344444444444332 122223333222211
Q ss_pred -----cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007626 520 -----KGRMVEAISIFNKMLRIGCAPD----DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 520 -----~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
..+..+.+.-.+.|.+....|| ...|..||..+....++..|.+.++.+.++.+.-
T Consensus 1299 ~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~ 1363 (1416)
T KOG3617|consen 1299 KLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNV 1363 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCcc
Confidence 2355566666666776544443 3578899999999999999999999999876543
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=0.0001 Score=75.71 Aligned_cols=189 Identities=16% Similarity=0.218 Sum_probs=92.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007626 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGL 422 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 422 (595)
.....+.+|+.+++.+.+.. .-..-|..+...|+..|+++.|+++|.+. ..++--|..|.+.|+++.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 33444555555555544432 22233444555555555555555555431 12333445555555555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007626 423 KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 423 ~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
++-.+... .......|.+-..-+-+.|++.+|++++-.+. .|+ ..|..|-+.|..+..+++.++-...
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh-
Confidence 55444321 12233334333344445555555555443222 122 2345555555555555554433211
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 503 CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIM 565 (595)
Q Consensus 503 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (595)
.-..|-..+..-+-..|+..+|..-|-+.. -|.+-+..|...+.|++|.++-
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 012344455556666777777776654432 2445566777777777776543
No 107
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=5.1e-05 Score=74.21 Aligned_cols=215 Identities=6% Similarity=-0.028 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q 007626 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAG-KCDAAKGLLSQFRPGEVTMSTFMYNSLLNAL 236 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (595)
++..+-.++...++.++|+.+++++++.. +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.-...+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 55556666777889999999999999875 556667777777777777 5789999999888765 34556677665556
Q ss_pred HHcCCH--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CC
Q 007626 237 VKQNNA--DEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRV---NE 311 (595)
Q Consensus 237 ~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~ 311 (595)
.+.|+. ++++.+++++++..+ .|..+|+....++...|+++++++.++++++... -|...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 666653 677888888888775 5788898888888899999999999999987653 3566666655555443 22
Q ss_pred ----HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007626 312 ----VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKL----GKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 312 ----~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
.++..+...++.... +-|...|+.+...+... +...+|.+.+.+..+.+ +.+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 245666665555443 45567777777777663 34456777777766543 3455666677777764
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=4.6e-05 Score=83.59 Aligned_cols=236 Identities=12% Similarity=0.102 Sum_probs=185.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007626 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP-----SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVT 404 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 404 (595)
.....|-..|......++.+.|.++.++.+.. +.+ -...|.++++.-...|.-+...++|+++.+.. -....
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 34577888899999999999999999998753 212 12457777777777788888899999998852 23457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHH
Q 007626 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-PKPFMYNPVIDGFC 483 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~ 483 (595)
|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++-++|..++.+..+.-++ -......-.++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 889999999999999999999999887 3456788999999999999999999999998865432 12445566677778
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 007626 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD--ITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A 561 (595)
+.|+.+.+..+|+..+... +-....|+.+|..-.+.|+.+.+..+|++.+..++.|-. ..|...+..--+.|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 9999999999999988763 336778999999999999999999999999998877754 4566666655666776666
Q ss_pred HHHHHHHHh
Q 007626 562 FRIMQRASE 570 (595)
Q Consensus 562 ~~~~~~~~~ 570 (595)
..+=.++.+
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 555555544
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=8e-06 Score=81.83 Aligned_cols=250 Identities=10% Similarity=-0.003 Sum_probs=184.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007626 304 SGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNM 383 (595)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 383 (595)
.-+.+.|++.+|.-.|+....+. +-+...|..|.......++-..|+..+++..+.. +-|......|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34567888999998998887765 4567889999888889999999999999988865 44667777888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHHcC
Q 007626 384 VSAEYMRERMLSFGYLPDVVTFSSLI-----------DGYCRNGQLNQGLKLCDEMK-GKNLSPNVYTFTILINALCKEN 451 (595)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~A~~l~~~m~-~~~~~p~~~~~~~ll~~~~~~g 451 (595)
..|...++.-+....+ |..+. ..+.....+....++|-++. ..+..+|+.++..|...|--.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 8898888877654211 00000 01111222334445555554 3444578888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 007626 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK-VTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
++++|.+.|+.+....+. |..+||-|..+++...+.++|+.-|.+.++. .|.- .+.-.|...|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999987643 7889999999999999999999999999986 5553 34455666789999999999998
Q ss_pred HHHHHC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007626 531 NKMLRI---------GCAPDDITVNSLISCLLKGGMPNEAFRI 564 (595)
Q Consensus 531 ~~m~~~---------g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (595)
-.++.. +..++..+|.+|=.++.-.++.|-+.+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 876651 1122446788887777777877755543
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=9.3e-08 Score=58.85 Aligned_cols=32 Identities=47% Similarity=0.897 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 502 RCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 502 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.7e-07 Score=57.69 Aligned_cols=31 Identities=45% Similarity=0.839 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 257 SQPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
+.||..+|++||++||+.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444443
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=2.8e-05 Score=70.74 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=105.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 007626 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRL 453 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 453 (595)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3467778887776544433221 11 0 1112566677777777766664 66777888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 454 NDARRFLKQLKWNDLVPKPFMYNPVIDGF-CKAGN--VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
++|...+++..+.... +...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888776643 677777777764 56666 47888888888876432 6677777778888888888888888
Q ss_pred HHHHHCCCCCCHHH
Q 007626 531 NKMLRIGCAPDDIT 544 (595)
Q Consensus 531 ~~m~~~g~~p~~~~ 544 (595)
+++++.. +|+..-
T Consensus 168 ~~aL~l~-~~~~~r 180 (198)
T PRK10370 168 QKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHhhC-CCCccH
Confidence 8887754 444433
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=0.00026 Score=75.46 Aligned_cols=182 Identities=10% Similarity=0.022 Sum_probs=127.0
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 007626 137 KLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQ 216 (595)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 216 (595)
+.+.+|-.+.+.-+--..=...|..|...|+...+...|.+.|+..-+.+ ..+..........|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 35555555554322222233489999999999889999999999999877 66888889999999999999999988443
Q ss_pred ccCCCC-ccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 007626 217 FRPGEV-TMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD 295 (595)
Q Consensus 217 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (595)
.-+... ..-...|....-.|.+.++...|+.-|+...+..+ .|...|..+..+|...|++..|+++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 332210 11112233345566677888899999988888765 57888999999999999999999999877643 443
Q ss_pred HHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 007626 296 IVTYNTL--ISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 296 ~~t~~~l--i~~~~~~g~~~~A~~~~~~~~ 323 (595)
. +|... .-..+..|++.+|...+..+.
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 22222 223456677888777776654
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=7.2e-05 Score=82.13 Aligned_cols=209 Identities=13% Similarity=0.052 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC-CCc---cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH
Q 007626 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG-EVT---MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWT 263 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 263 (595)
|.++..|-..+......++.+.|.++.+++... ++. --.-+|.++++.-..-|.-+...++|++..+.. ..-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 334445555555555666666666666555432 111 112245555555555555555566666655421 12234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 007626 264 FNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYC 343 (595)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 343 (595)
|..|...|.+.+++++|-++|+.|.+. +.-....|...+..+.+.++-+.|..++.+....-+-...+......+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 555566666666666666666666532 1234455555566666666656666666555432200011222223333334
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007626 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP 400 (595)
Q Consensus 344 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 400 (595)
+.|+.+.+..+|+..+... +--...|+..++.-.+.|+.+.+..+|++++..++.|
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555566655665555432 2334455555555555555555555665555555443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=2e-05 Score=81.03 Aligned_cols=216 Identities=14% Similarity=0.061 Sum_probs=164.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 298 TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGF 377 (595)
Q Consensus 298 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 377 (595)
.-..+...+.+.|-...|..+++++. .|..+|.+|+..|+..+|..+..+..+. +|+...|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 33566777888899999999888765 4667788889999999999988888773 68888888888877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007626 378 GKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDAR 457 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 457 (595)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|..+..+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777778888777765432 22222333344788888888888776654 445677888888888888999988
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 458 RFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+.|..-....+ .+...||.+-.+|.+.|+-.+|...+++..+.. .-+...|...+....+.|.+++|++.+.++..
T Consensus 540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88888776542 357789999999999999999999999988876 33555666666677888999999988888876
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=1.1e-05 Score=82.94 Aligned_cols=221 Identities=12% Similarity=0.046 Sum_probs=179.3
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007626 329 SPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSL 408 (595)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 408 (595)
+|-...-..+...+...|-...|..+|+++. .|...+.+|+..|+..+|..+..+..+. +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444567788889999999999998874 4667888999999999999999888884 6899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007626 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.+......-+++|.++.+..... .-..+.......+++.++.+.|+.-.+.+. .-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhh
Confidence 98888777889999998876433 112222223347899999999998777653 3567898999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 489 DEANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
+.|.+.|...... .| +...||.+-.+|.+.|+-.+|...+++..+.+ .-+-..|...+....+.|.+++|++.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999876 44 56789999999999999999999999999977 55566778888888999999999999998
Q ss_pred HHhc
Q 007626 568 ASED 571 (595)
Q Consensus 568 ~~~~ 571 (595)
+.+.
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 8753
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=4.3e-05 Score=69.56 Aligned_cols=155 Identities=10% Similarity=0.071 Sum_probs=102.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007626 339 ISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQL 418 (595)
Q Consensus 339 l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 418 (595)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3456777777776544433221 11 01223566677777777666653 45677777787888888888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 007626 419 NQGLKLCDEMKGKNLSPNVYTFTILINAL-CKENR--LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIV 495 (595)
Q Consensus 419 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 495 (595)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888777764 45667777777654 56566 47888888888777644 6677777777888888888888888
Q ss_pred HHHHHCCCCCCHHH
Q 007626 496 AEMEEKRCKPDKVT 509 (595)
Q Consensus 496 ~~m~~~g~~p~~~~ 509 (595)
+++.+.. +|+..-
T Consensus 168 ~~aL~l~-~~~~~r 180 (198)
T PRK10370 168 QKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHhhC-CCCccH
Confidence 8877663 344433
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00015 Score=65.99 Aligned_cols=105 Identities=26% Similarity=0.296 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007626 448 CKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA----GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM 523 (595)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 523 (595)
.+..+++-|.+.++.|.+.+ +..+.+.|..++.+. +++.+|.-+|++|-++ ..|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 34444444444444444321 233444344333321 2344444444444432 344444444444444444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007626 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
++|..+++..+... .-++.+...++.+-...|.
T Consensus 224 eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 224 EEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 55555444444432 3334444444443333333
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=7.7e-05 Score=81.22 Aligned_cols=239 Identities=11% Similarity=0.036 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHH
Q 007626 258 QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIV-TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYT 336 (595)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 336 (595)
+.+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+...++..++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 345667788888888888888888888866643 34433 333333355555554444433
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007626 337 SVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG 416 (595)
Q Consensus 337 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 416 (595)
.++.......++.-...+...|.+.+ -+...+..+..+|-+.|+.++|..+++++.+.. +-|+.+.|.+...|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 22333333344444444444454432 344566677777778888888888888877765 44677777777777777
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 007626 417 QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVA 496 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 496 (595)
++++|..++.+.+.. +...+++.++.++|.++....+. + ++.-.++.+
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d----------------~d~f~~i~~ 211 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-D----------------FDFFLRIER 211 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-c----------------chHHHHHHH
Confidence 777777777766543 45556667777777776655432 1 222222222
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 497 EMEEK-RCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 497 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
.+... |..--..++-.+...|-..+++++++.+++..++.. +-|.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 22221 212223344444455556666777777777766654 335555556666654
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=3.8e-05 Score=72.57 Aligned_cols=188 Identities=12% Similarity=0.045 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC--HHH
Q 007626 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS---PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS--TFM 228 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 228 (595)
.....+..+...+...|++++|...|+++.+.. +.+. .++..+..++.+.|++++|...++++.+...... ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 466688888889999999999999999988854 2232 4677788899999999999999999976542211 124
Q ss_pred HHHHHHHHHHc--------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007626 229 YNSLLNALVKQ--------NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYN 300 (595)
Q Consensus 229 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (595)
+..+..++... |+.++|.+.|+++.+..+. +...+..+..... .... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence 55556666654 7788999999999876542 2233322221111 0000 00 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007626 301 TLISGLCRVNEVARGHELLKEVKFKSEFSP-DVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
.+...+.+.|++++|...++......+-.| ....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678889999999999999876542222 3567889999999999999999998888764
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=9.6e-05 Score=67.28 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 007626 371 NVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE 450 (595)
Q Consensus 371 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~ 450 (595)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+++..... ++|..+|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555666666666666655554332 12344455556666667777777777777666553 66666777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 451 NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
|+++.|..-+.+..+.... ++..+|.+...+.-.|+.+.|..++......+.. |...-..+.-.....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777766666655422 4556666666666667777777776666655322 4444555555566667777766655
Q ss_pred HH
Q 007626 531 NK 532 (595)
Q Consensus 531 ~~ 532 (595)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 44
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.39 E-value=0.00031 Score=74.86 Aligned_cols=182 Identities=8% Similarity=-0.060 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 007626 172 HDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKE 251 (595)
Q Consensus 172 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (595)
...|+..|-+..+.. +.=...|..|...|+..-+...|.+.|++.-+.+ .-+......+.+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444444433 2223456666666665556666666666665544 23455556666666666666666666332
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007626 252 YFRLYS-QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSP 330 (595)
Q Consensus 252 m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 330 (595)
.-+..+ ..-...|...--.|.+.++...|..-|+...... +-|...|..++.+|.+.|++..|.++|.+...- .|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL---RP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc---Cc
Confidence 222111 0011112223334455566666666666555332 224556666666666666666666666665542 23
Q ss_pred CHh-hHHHHHHHHHhcCChhHHHHHHHHHH
Q 007626 331 DVV-TYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 331 ~~~-~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
+.. .-....-.-|..|.+.+|+..+....
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 321 11112223455666666666666554
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=0.00022 Score=77.01 Aligned_cols=146 Identities=9% Similarity=0.033 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007626 364 KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTI 442 (595)
Q Consensus 364 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 442 (595)
+.+...+..|.......|..++|..+++...+. .|| ......+...+.+.+++++|+...++..... +-+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 445666666667777777777777777776664 343 3445556666677777777777777766654 445556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007626 443 LINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
+..++.+.|++++|..+|+++...+. .+..++..+...+.+.|+.++|...|++..+. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 66666777777777777777766332 24666666777777777777777777776654 233444444433
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00036 Score=63.63 Aligned_cols=248 Identities=13% Similarity=0.092 Sum_probs=136.5
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhH
Q 007626 165 SLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADE 244 (595)
Q Consensus 165 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (595)
-+.-.|++..++..-...... +.+...-..+.++|...|...... .++.... .+.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 334456666666555444332 245555666777777777654332 3333322 3334444444444433444444
Q ss_pred HH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 245 AV-YMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 245 A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
-+ ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 344444443333333333444456777788888887776521 22333333344556677777777777776
Q ss_pred hcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007626 324 FKSEFSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYL 399 (595)
Q Consensus 324 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (595)
.. .+..+.+.|..++.+ .+++.+|.-+|++|-++ .+|+..+.+-...++...|++++|..+++.......
T Consensus 165 ~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~- 238 (299)
T KOG3081|consen 165 QI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA- 238 (299)
T ss_pred cc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence 43 244556655555543 35677777777777653 357777777777777777777777777777766542
Q ss_pred CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhh
Q 007626 400 PDVVTFSSLIDGYCRNGQL-NQGLKLCDEMKG 430 (595)
Q Consensus 400 p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 430 (595)
.++.+...+|-+-...|.. +...+.+.++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3455555554444444443 333344444443
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00013 Score=78.66 Aligned_cols=214 Identities=7% Similarity=0.064 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007626 333 VTYTSVISGYCKLGKMDKAT-GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDG 411 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 411 (595)
.....+=.+...-|..++|- +++.++.+ ++..........++..-+..... ....++..+..|...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i 95 (694)
T PRK15179 29 TILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARA 95 (694)
T ss_pred HHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHH
Confidence 33444444556666666663 44444432 33444444444444433333322 235568889999999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007626 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
..+.|.+++|..+++...+.. |-+......+...+.+.+++++|....++....++. +......+..++.+.|++++|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHH
Confidence 999999999999999998873 556677788888999999999999999999987743 677888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
..+|+++...+ +-+..++..+..++...|+.++|...|++.++.- .+....|+.++ +++..-..++++..
T Consensus 174 ~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 174 DACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 99999999742 3357888999999999999999999999998853 45555555443 23344455555554
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00017 Score=71.40 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=55.8
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 007626 414 RNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (595)
..|++++|+..++.+... .|-|+.......+.+.+.++.++|.+.++.+....+. .....-.+..+|.+.|++.+|.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 345555555555554443 2334444444455555555555555555555544311 13344445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007626 494 IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAIS 528 (595)
Q Consensus 494 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 528 (595)
++++..... +-|...|..|..+|...|+..+|..
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 555554432 3345555555555555555555443
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.30 E-value=1.4e-05 Score=68.65 Aligned_cols=92 Identities=10% Similarity=-0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007626 442 ILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
.+...+...|++++|...|+......+ .+...|..+..++...|++++|...|++..+.. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 344444455555555555555544432 244445555555555555555555555555432 224444455555555555
Q ss_pred CHHHHHHHHHHHHH
Q 007626 522 RMVEAISIFNKMLR 535 (595)
Q Consensus 522 ~~~~A~~~~~~m~~ 535 (595)
++++|+..|++.++
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.00019 Score=65.34 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007626 195 EFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRI 274 (595)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 274 (595)
..+...+...|+-+.+..+....... .+.+....+.++....+.|++..|+..|.+.....+ +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 33344444444444444444443221 123333444455555555555555555555444332 4455555555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 007626 275 GEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGI 354 (595)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l 354 (595)
|++++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++....... .-|...-..+.......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555444321 1133334444444444455555555554444332 22344444444444455555555444
Q ss_pred HH
Q 007626 355 YN 356 (595)
Q Consensus 355 ~~ 356 (595)
-.
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 33
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00017 Score=78.57 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007626 295 DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV-VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 295 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
+...+..|+..+...+++++|.++.+...... |+. ..|-.+...+.+.++..++..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 34556667777777777777777777655433 332 2233333345555554433333 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 007626 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRL 453 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 453 (595)
+..+....++.....+...|.+.+ -+...+..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 333444444544445555555532 234466677777777777777777777777766 55677777777777777 77
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 454 NDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
++|.+++.+.... +...+++.++.++|.++.+.. |+ +.+.-..+.+++
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHH
Confidence 7777777665543 555567777777777777652 22 222223333333
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCccc
Q 007626 534 LRI-GCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWK 580 (595)
Q Consensus 534 ~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 580 (595)
... |..--..++.-+...|.+.+++++++.+++.+++..+.+.....
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 332 33344556667778899999999999999999998876655433
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.27 E-value=0.0001 Score=63.39 Aligned_cols=95 Identities=8% Similarity=-0.101 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 007626 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK 484 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 484 (595)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....+. .++..+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344555555666666666666555543 34555555555556666666666666666555442 245555555555666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007626 485 AGNVDEANVIVAEMEEK 501 (595)
Q Consensus 485 ~g~~~~A~~l~~~m~~~ 501 (595)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.25 E-value=0.012 Score=62.84 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=116.8
Q ss_pred HhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-
Q 007626 131 KRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA- 209 (595)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~- 209 (595)
-++++.+.|+...+-.....+ +|..+...+-..|.+.++.++|..+|+..... -|+......+..+|++.+++.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 344777777766654433322 58889999999999999999999999998876 4668888888888888887754
Q ss_pred ---HHHHHHhccCCCCccCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC
Q 007626 210 ---AKGLLSQFRPGEVTMSTFMYNSLLNALVKQN----------NADEAVYMFKEYFRLY-SQPDTWTFNILIQGLSRIG 275 (595)
Q Consensus 210 ---A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g 275 (595)
|.++++...+ .+..+=++++.+...- -..-|.+.++.+++.+ .--+..-...-...+...|
T Consensus 130 Qkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~ 204 (932)
T KOG2053|consen 130 QKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG 204 (932)
T ss_pred HHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc
Confidence 5555654333 3444444555444331 1234556666666544 2222333333444556778
Q ss_pred CHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 276 EVKKAFEFFY-DMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKS 326 (595)
Q Consensus 276 ~~~~A~~~~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (595)
++++|.+++. ...+.-..-+...-+.-++.+...+++.+..++-.++...+
T Consensus 205 k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 205 KYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 8888888883 33333223344444455666666667766666666665544
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=4.8e-05 Score=64.83 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..++++.++.+ +.+...+..+..+|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34444444555555555555555554432 2244444555555555555555555555554433 334444445555555
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007626 554 KGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~~~ 573 (595)
..|++++|.+.++++.+..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 97 ALGEPESALKALDLAIEICG 116 (135)
T ss_pred HcCCHHHHHHHHHHHHHhcc
Confidence 55555555555555555443
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.01 Score=59.73 Aligned_cols=376 Identities=12% Similarity=0.128 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 007626 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL 267 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 267 (595)
|-|..+|..||+-+... ..+++.+.++++... .+-+...|..-|..-.+.++++....+|.+.+..- .+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 77999999999988655 999999999999864 46677889999999999999999999999987653 456667666
Q ss_pred HHHHHhc-CCHH----HHHHHHHHHh-hCCCCCC-HHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhcCCCC--
Q 007626 268 IQGLSRI-GEVK----KAFEFFYDMG-SFGCSPD-IVTYNTLISG---------LCRVNEVARGHELLKEVKFKSEFS-- 329 (595)
Q Consensus 268 i~~~~~~-g~~~----~A~~~~~~m~-~~g~~p~-~~t~~~li~~---------~~~~g~~~~A~~~~~~~~~~~~~~-- 329 (595)
+..-.+. |+.. ...+.|+-.. +.|+.+- -..|+..+.. |....+++...+++.++.... +.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP-m~nl 171 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP-MHNL 171 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc-cccH
Confidence 6644332 2222 2222333222 3343322 1223333322 223345666677777765321 00
Q ss_pred ----CCHhhHHHHHHHH-------HhcCChhHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHHhcC
Q 007626 330 ----PDVVTYTSVISGY-------CKLGKMDKATGIYNEMNS--CGIKPSAVT---------------FNVLIDGFGKVG 381 (595)
Q Consensus 330 ----p~~~~~~~ll~~~-------~~~g~~~~A~~l~~~m~~--~g~~p~~~~---------------~~~ll~~~~~~g 381 (595)
.|-..|..=|+.. -+...+..|.++++++.. .|+..+..+ |..+|. +-+.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcC
Confidence 0111222222211 233456778888888753 343322222 333332 11221
Q ss_pred CHH---------HHHHHHHH-HHhCCCCCCHHHH-H----HHHHHHHHcCC-------HHHHHHHHHHHhhCCCCCCHHH
Q 007626 382 NMV---------SAEYMRER-MLSFGYLPDVVTF-S----SLIDGYCRNGQ-------LNQGLKLCDEMKGKNLSPNVYT 439 (595)
Q Consensus 382 ~~~---------~A~~~~~~-m~~~g~~p~~~~~-~----~li~~~~~~g~-------~~~A~~l~~~m~~~~~~p~~~~ 439 (595)
-+. ...-.+++ +.-.+..|+.... . ..-+.+...|+ .+++..+++.....-..-+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11112222 2223334433211 1 11123334444 4455666666554432334444
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 007626 440 FTILINALCKEN---RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP-DKVTFTILII 515 (595)
Q Consensus 440 ~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~ 515 (595)
|..+.+.=-..- ..+.....++++...-...-..+|-.++....+..-++.|..+|.++.+.+..+ ++..+++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 544443221111 355666666666554333234578888998889999999999999999988777 6777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007626 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
-+|. ++.+-|.++|+--++. +..++......++.+...|+-..|+.+|++.++.
T Consensus 411 y~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7765 7889999999987663 3455666678888999999999999999999988
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.18 E-value=0.016 Score=61.76 Aligned_cols=232 Identities=12% Similarity=0.020 Sum_probs=142.4
Q ss_pred hHHHHHHhc--CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 125 NSLEVIKRL--DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI 202 (595)
Q Consensus 125 ~~~~~l~~~--~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (595)
.+..++..+ ++-..|++-..-..++.+-.+...++.++ .+.+.|+.++|..+++.....+ ..|..|+..+-..|.
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYR 88 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHH
Confidence 444555555 34455666555554444333333333333 3468899999998888877765 448888999999999
Q ss_pred hcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C-----
Q 007626 203 RAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG-E----- 276 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~----- 276 (595)
..++.++|..+|++.... .|+......+..+|++.+.+.+-.++=-++.+.-+ .+...+=+++..+.+.- .
T Consensus 89 d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccc
Confidence 999999999999998765 45677777788888888877654444444433322 34444445555444332 1
Q ss_pred ----HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 007626 277 ----VKKAFEFFYDMGSFGCSP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKA 351 (595)
Q Consensus 277 ----~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 351 (595)
..-|.+.++.+.+.+-+. +..-.-.-...+-..|++++|++++..-....-..-+...-+.-+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 224555666666443111 111122223344567889999988843222221223334445667778888999999
Q ss_pred HHHHHHHHHCC
Q 007626 352 TGIYNEMNSCG 362 (595)
Q Consensus 352 ~~l~~~m~~~g 362 (595)
.++-.++.+.|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 99988888876
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0026 Score=57.72 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHHHhh---CC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh
Q 007626 275 GEVKKAFEFFYDMGS---FG-CSPDIVT-YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMD 349 (595)
Q Consensus 275 g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 349 (595)
.+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+..+-+-.+-+.-... ..+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchh
Confidence 456677777666652 23 4445443 344445555677778888888777655311222222222 2234567788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007626 350 KATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK 429 (595)
Q Consensus 350 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 429 (595)
+|+++|+.+.+.+ +.|.+++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888887766 556666666565666666666777666666554 35577788888888888888888888888776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCC
Q 007626 430 GKNLSPNVYTFTILINALCKEN---RLNDARRFLKQLKWND 467 (595)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~ 467 (595)
-.. |.++..+..+...+.-.| +.+.+.+++.+..+..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 653 444445555555544333 3555666666666544
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.002 Score=63.99 Aligned_cols=140 Identities=17% Similarity=0.167 Sum_probs=110.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007626 376 GFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLND 455 (595)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 455 (595)
.+...|++++|+..++.++... +-|+.......+.+.+.++.++|.+.++.+.... +........+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 4567788999999999988762 3345555666788899999999999999998773 3336667778889999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 456 ARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 456 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
|+.+++....... .|+..|..|.++|...|+..+|..-..+ ++...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 9999998887764 4888999999999999988887665444 34567899999998888877
Q ss_pred C
Q 007626 536 I 536 (595)
Q Consensus 536 ~ 536 (595)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0017 Score=58.97 Aligned_cols=191 Identities=9% Similarity=0.055 Sum_probs=135.5
Q ss_pred HhcCChhHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007626 343 CKLGKMDKATGIYNEMNS---CG-IKPSAVT-FNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQ 417 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 417 (595)
+...+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...- +-+...-..-.-.+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 345678899999888864 33 4455543 4556667778889999999988887753 2222222222233456789
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007626 418 LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAE 497 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 497 (595)
+++|.++++.+.+.+ |.|..++-.=+...-..|+.-+|++-+....+. +..|...|..+...|...|+++.|.--+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999998886 667777776666677778877888777776654 456888999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC
Q 007626 498 MEEKRCKPDKVTFTILIIGHCMKG---RMVEAISIFNKMLRIG 537 (595)
Q Consensus 498 m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g 537 (595)
+.-.. +-+...+..+...+...| +..-|.++|.+.++..
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 88652 224555566766665544 5667888888888743
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=0.00019 Score=61.12 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=33.0
Q ss_pred HHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007626 199 SSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (595)
..+...|++++|...++.+...+ +.+...+..+...+.+.|++++|..++++..+.++ .+...+..+...+...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCCHH
Confidence 33333344444444443333322 22333333334444444444444444443333321 22333333333344444444
Q ss_pred HHHHHHHHHh
Q 007626 279 KAFEFFYDMG 288 (595)
Q Consensus 279 ~A~~~~~~m~ 288 (595)
+|...|+...
T Consensus 103 ~A~~~~~~al 112 (135)
T TIGR02552 103 SALKALDLAI 112 (135)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00037 Score=60.11 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 007626 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD--KVTFTILI 514 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li 514 (595)
.|..++..+ ..++...+...++.+......-. ....-.+...+...|++++|...|+...+....|+ ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 46777777777777776542211 22334455677788888888888888887652222 12344566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 515 IGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRA 568 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (595)
..+...|++++|+..++..... ......+...++.|.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888888664322 344556777888888888888888888775
No 140
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.014 Score=60.23 Aligned_cols=348 Identities=13% Similarity=0.114 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH----------HHHhcCChHHHHHHHHhccCCCCc
Q 007626 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVS----------SCIRAGKCDAAKGLLSQFRPGEVT 223 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~----------~~~~~g~~~~A~~~~~~~~~~~~~ 223 (595)
|-+..|..|.......-.++.|...|-+... .+.......|-. .-+--|++++|+++|-.+.++++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh-
Confidence 5556666666666555555555555544332 111111111111 11123666666666666554322
Q ss_pred cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007626 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQP----DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY 299 (595)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 299 (595)
.+..+.+.|++-...++++. .|... -...|+.+...+.....+++|.+.|..-.. .
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 34445555655554444332 11111 133566666666666666666666654321 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007626 300 NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
...+.++.+...+++-+.+.+.+ +.|....-.+..++...|.-++|.+.|-+-- .|. ..+.+|..
T Consensus 826 e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVE 890 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHH
Confidence 12455555555555555544443 3344556667778888888888887764432 121 34556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCCHHHHH
Q 007626 380 VGNMVSAEYMRERMLSFGYLPDVVTF--------------SSLIDGYCRNGQLNQGLKLCDEMKGK----NLSPNVYTFT 441 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~ 441 (595)
.++|.+|.++-++..- |.+.+. .--|..+.+.|+.-.|.+++.+|.+. +.++-..--.
T Consensus 891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 7777777766654332 221111 11233445566666666666666433 3333222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007626 442 ILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
.++.++. ..+..++.+-.+.....|...+... +...|-..++.++.+..-.- .....|..|..-....|
T Consensus 967 YVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wrg---AEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen 967 YVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWRG---AEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred HHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhhh---HHHHHHHHHHHHHHHhc
Confidence 2222221 1222333333333333333222111 12222233333333322110 12344455555566678
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 007626 522 RMVEAISIFNKMLR-IGCAPDDITVNSLISCLLKG 555 (595)
Q Consensus 522 ~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~ 555 (595)
..+.|++.--.+.+ ..+-|...+|..|.-+-+..
T Consensus 1036 ~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred hHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 88888776555444 34566677776665554443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00044 Score=69.14 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
....|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445566666778888888888888765 33 44557777777788888888888888652 336666666667788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007626 519 MKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
..++++.|+.+.+++.+.. +-+..+|..|..+|.+.|++++|+-.++.+--.
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888999999999888753 445568888999999999999998888876643
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00069 Score=58.43 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHH
Q 007626 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN---VYTFTILINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPV 478 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l 478 (595)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......+. ....-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444443 3566666666666665542 222 12233344555666666666666666665542221 1233445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 479 IDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
...+...|++++|+..++..... ......+......+...|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56666666777776666553322 223445555666666777777777666653
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.90 E-value=2e-05 Score=48.95 Aligned_cols=33 Identities=39% Similarity=0.861 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 007626 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS 366 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~ 366 (595)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666777777777777777777766666665
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=2.3e-05 Score=48.69 Aligned_cols=33 Identities=45% Similarity=0.784 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 007626 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD 295 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (595)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777766666665
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00044 Score=53.90 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007626 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK 554 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 554 (595)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455666666777777777777776552 2234556666677777777777777777776643 3344566677777777
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 007626 555 GGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 555 ~g~~~~A~~~~~~~~~~~ 572 (595)
.|++++|...++++.+..
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 777777777777766543
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.0014 Score=65.61 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 007626 372 VLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN 451 (595)
Q Consensus 372 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g 451 (595)
.|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+..+.. +.+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444445555666666666655542 33 22334555555555555665555555432 334444444445555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007626 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
+++.|.++.+++....+ .+-.+|..|..+|...|+++.|+..+..+-
T Consensus 249 ~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 56666666655554431 133455556666666666666655555443
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.78 E-value=4e-05 Score=47.27 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 007626 262 WTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP 294 (595)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 294 (595)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.76 E-value=4.7e-05 Score=46.96 Aligned_cols=33 Identities=33% Similarity=0.637 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007626 333 VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP 365 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 365 (595)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00055 Score=68.72 Aligned_cols=122 Identities=15% Similarity=0.188 Sum_probs=79.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007626 329 SPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC--GIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
+.+......+++.+....+.+++..++.+.... ....-..|..++++.|.+.|..+++..++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344555666666666666677777777776654 111222344577777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 007626 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE 450 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~ 450 (595)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776666566666665555555444
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.0012 Score=54.58 Aligned_cols=100 Identities=16% Similarity=0.035 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 007626 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCK--PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG--CAPDDITVNSLI 549 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~ 549 (595)
++..++..+.+.|++++|.+.|.++.+.... .....+..+...+.+.|++++|...|+.+.... .+.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555556666666666555543110 012334445555566666666666666655431 011134455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 550 SCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.++.+.|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 556666666666666666665544
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.70 E-value=7.9e-05 Score=57.41 Aligned_cols=82 Identities=26% Similarity=0.331 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007626 485 AGNVDEANVIVAEMEEKRCK-PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFR 563 (595)
Q Consensus 485 ~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 563 (595)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|+.++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 47788888888888776331 2344555578888888888888888877 3322 1223444456778888888888888
Q ss_pred HHHHH
Q 007626 564 IMQRA 568 (595)
Q Consensus 564 ~~~~~ 568 (595)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88764
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.00066 Score=52.86 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007626 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
|..+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445555556666666666666655543 3333445555555555555555555555554432 2233444555555555
Q ss_pred cCCHhHHHHHHHHHHH
Q 007626 239 QNNADEAVYMFKEYFR 254 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~ 254 (595)
.|+.+.|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5555555555555443
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0015 Score=55.49 Aligned_cols=92 Identities=10% Similarity=-0.048 Sum_probs=48.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007626 478 VIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
+...+...|++++|.++|+-+...... +..-|-.|..++-..|++++|+..|..+.... +.|+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 333444555555555555555544211 33444455555555555666666665555544 3445555555555555666
Q ss_pred HHHHHHHHHHHHhc
Q 007626 558 PNEAFRIMQRASED 571 (595)
Q Consensus 558 ~~~A~~~~~~~~~~ 571 (595)
.+.|++.|+.++..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555555543
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.0021 Score=52.96 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 007626 439 TFTILINALCKENRLNDARRFLKQLKWNDLV--PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCK--PDKVTFTILI 514 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li 514 (595)
++..++..+.+.|++++|.+.+..+...... .....+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555666666666666666543311 11234555666666666666666666666543211 1134455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 007626 515 IGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
.++...|+.++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.64 E-value=0.001 Score=66.87 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007626 433 LSPNVYTFTILINALCKENRLNDARRFLKQLKWN--DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTF 510 (595)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 510 (595)
.+.+......+++.+....+++.+..++.+.... ....-+.+..++++.|.+.|..++++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666677766666544 11122334457777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007626 511 TILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKG 555 (595)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 555 (595)
+.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776665555556655545455444
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.55 E-value=0.0013 Score=51.80 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=39.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007626 444 INALCKENRLNDARRFLKQLKWNDL-VPKPFMYNPVIDGFCKAG--------NVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 555555555555554331 1233455555666556666666666665
Q ss_pred HHHH
Q 007626 515 IGHC 518 (595)
Q Consensus 515 ~~~~ 518 (595)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.0016 Score=63.00 Aligned_cols=129 Identities=9% Similarity=0.080 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007626 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINA-LCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (595)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554322 1112222222222 11123344455555544433 222344444444555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 483 CKAGNVDEANVIVAEMEEKRCKPDK---VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+.++.+.|..+|++.... +.++. ..|...+.--.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554433 11111 2444444444444444444444444443
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.52 E-value=0.0017 Score=57.84 Aligned_cols=86 Identities=8% Similarity=0.014 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007626 437 VYTFTILINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
...+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566666667777888888887777765443222 3567777777777777777777777777652 22445556666
Q ss_pred HHHHhcCCH
Q 007626 515 IGHCMKGRM 523 (595)
Q Consensus 515 ~~~~~~g~~ 523 (595)
..+...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 666666653
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.11 Score=50.90 Aligned_cols=276 Identities=11% Similarity=-0.006 Sum_probs=129.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007626 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
....+.+..++.+|+..+...++.. +-+..-|..-+..+...|++++|.--.+.-++..- -....+.-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 3345667777888888888888875 44566666677777777888777766655544321 111122223333333344
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 007626 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG-CSPDIVTYNTLI-SGLCRVNEVARGHELL 319 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li-~~~~~~g~~~~A~~~~ 319 (595)
..+|.+.++.- ..| ....++..++...... -+|.-.++..+- .++...|++++|..+-
T Consensus 133 ~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 44444444310 001 1112222222222111 112223332221 2333445555555554
Q ss_pred HHHHhcCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-------------HHHHHHhcCCHH
Q 007626 320 KEVKFKSEFSPDVVTYTSVISG--YCKLGKMDKATGIYNEMNSCGIKPSAVTFNV-------------LIDGFGKVGNMV 384 (595)
Q Consensus 320 ~~~~~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~-------------ll~~~~~~g~~~ 384 (595)
-.+.+.. ....+..++.+ +.-.++.+.|...|++.+..+ |+...-.. -.+-..+.|++.
T Consensus 193 ~~ilkld----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILKLD----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHhcc----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 4444322 11122222222 223445555555555555432 33222111 112335566666
Q ss_pred HHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007626 385 SAEYMRERMLSF---GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLK 461 (595)
Q Consensus 385 ~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (595)
.|.+.+.+.+.. ...++...|.....+..+.|+.++|+.-.++..... +.-...|..-..++...++|++|.+-++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666543 223344455555555666666666666666655442 0011122222333444566666666666
Q ss_pred HHHhC
Q 007626 462 QLKWN 466 (595)
Q Consensus 462 ~~~~~ 466 (595)
...+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 65544
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.076 Score=51.93 Aligned_cols=277 Identities=13% Similarity=-0.036 Sum_probs=158.8
Q ss_pred HHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007626 200 SCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKK 279 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (595)
.+.+..++.+|+..+...++.. +.+..-|..-+..+...|++++|..-.+.-++... -......-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHHHHH
Confidence 3445556666666666666654 33444555455555666667666655555444321 112222223333444444444
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHH
Q 007626 280 AFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV-ISGYCKLGKMDKATGIYNEM 358 (595)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~l~~~m 358 (595)
|.+.++ +...| ....++..++.+.....-+|.-..|..+ ..++.-.|++++|...--..
T Consensus 136 A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444443 11111 1122233333332222122333444433 34566789999999887777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHHcCCHHHHHHHH
Q 007626 359 NSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTF-------------SSLIDGYCRNGQLNQGLKLC 425 (595)
Q Consensus 359 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------------~~li~~~~~~g~~~~A~~l~ 425 (595)
++.+ ..+....-.--.++.-.++.+.|...|++.+..+ |+...- ..=.+-..+.|++.+|.+.|
T Consensus 196 lkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 196 LKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred Hhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 6643 1222222222234456678899999999888764 443221 11223346789999999999
Q ss_pred HHHhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007626 426 DEMKGK---NLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 426 ~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
.+.+.. +..|+...|........+.|+.++|+.--++....+.. -...|..-..++...+++++|.+-+++..+..
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 998765 45567777888888888999999999998888755411 12233333445556688999999999887653
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.51 E-value=0.0015 Score=51.51 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=45.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007626 232 LLNALVKQNNADEAVYMFKEYFRLYS-QPDTWTFNILIQGLSRIG--------EVKKAFEFFYDMGSFGCSPDIVTYNTL 302 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (595)
-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666665 566666666666555432 233456666667666677777777766
Q ss_pred HHHHHh
Q 007626 303 ISGLCR 308 (595)
Q Consensus 303 i~~~~~ 308 (595)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 665543
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.49 E-value=0.00014 Score=43.63 Aligned_cols=29 Identities=48% Similarity=1.033 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007626 334 TYTSVISGYCKLGKMDKATGIYNEMNSCG 362 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g 362 (595)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666665544
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.48 E-value=0.00013 Score=43.80 Aligned_cols=29 Identities=38% Similarity=0.717 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007626 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFG 291 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 291 (595)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555666666666666666665555544
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.43 E-value=0.012 Score=61.82 Aligned_cols=67 Identities=18% Similarity=0.042 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007626 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 574 (595)
+...|..+...+...|++++|...++++++.. |+...|..++..+...|+.++|.+.++++..-.+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 33445555444445566666666666665543 45555666666666666666666666666555443
No 165
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.11 Score=54.16 Aligned_cols=207 Identities=11% Similarity=0.086 Sum_probs=113.7
Q ss_pred ccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 007626 223 TMSTFMYNSLLNALVKQNNADEAVYMFKEYFRL-YSQ--------PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCS 293 (595)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 293 (595)
.|.+..|..|.+.....-.++.|...|-+.... |++ .+...-.+=+. .--|++++|.++|-+|..+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 356667777777666666777777666554331 110 00000011111 22477888888887775432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007626 294 PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 294 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
..|..+.+.|++-...++++.-.....-..-...|+.+...+.....+++|.+.|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 245556667777666666554221110111235677777777777778887777765321 1134
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 007626 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRL 453 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 453 (595)
+.++.+..++++.+.+...+.+ |....-.+.+++...|.-++|.+.+-+-- .| ...+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence 5556666666665555544432 44455566667777777777766553321 11 2345556666677
Q ss_pred HHHHHHHHHH
Q 007626 454 NDARRFLKQL 463 (595)
Q Consensus 454 ~~A~~~~~~~ 463 (595)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 7776665543
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.40 E-value=0.0033 Score=63.01 Aligned_cols=102 Identities=15% Similarity=0.016 Sum_probs=84.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007626 443 LINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR 522 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 522 (595)
-...+...|++++|+.+++++++.+.. +...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999987744 68889999999999999999999999999874 3367788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007626 523 MVEAISIFNKMLRIGCAPDDITVNSL 548 (595)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~~~~~~~l 548 (595)
+++|+..|++.++.. |+......+
T Consensus 86 ~~eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 999999999999854 444443333
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.39 E-value=0.014 Score=49.75 Aligned_cols=95 Identities=12% Similarity=-0.030 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
....+..-+...|++++|.++|+.+...++. +..-|-.|.-++-..|++++|+..|........ -|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3344444556677777777777777666533 455666666677777777777777777766653 36666667777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007626 519 MKGRMVEAISIFNKMLR 535 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~ 535 (595)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776665
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.37 E-value=0.00094 Score=49.03 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcC
Q 007626 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGG-MPNEAFRIMQRASEDQ 572 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 572 (595)
+..+|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.| ++++|++.++++++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45667777777788888888888888887764 445667777777888887 6888888888777643
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.37 E-value=0.033 Score=48.24 Aligned_cols=131 Identities=13% Similarity=0.063 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHH
Q 007626 399 LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-PKPFMYNP 477 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 477 (595)
.|++..--.|..++.+.|+..+|...|.+....-+.-|......+.++....+++..|...++.+.+.... -++...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555566666666666666666666655444555566666666666666666666666665544211 01223444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007626 478 VIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
+.++|...|++..|..-|+..... -|+...--.....+.++|+.++|..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 555666666666666666666554 3333333333333455555555544333
No 170
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.003 Score=61.08 Aligned_cols=132 Identities=13% Similarity=-0.060 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCCC-CCCHH
Q 007626 439 TFTILINALCKENRLNDARRFLKQLK----WNDLV-PKPFMYNPVIDGFCKAGNVDEANVIVAEME----EKRC-KPDKV 508 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~-~p~~~ 508 (595)
.|..|.+.|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666677777776655422 11211 123456666777777777777777776643 2221 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 509 TFTILIIGHCMKGRMVEAISIFNKMLR----I-GCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
+.-+|...|.-...++.|+.++.+-+. . +..-....+.+|..+|...|..++|..+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445566666666677777777765443 1 2223455677777777777777777777665544
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.33 E-value=0.0045 Score=62.08 Aligned_cols=92 Identities=10% Similarity=-0.085 Sum_probs=65.8
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007626 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
...+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445567777778888777777765 5566677777777777777777777777776654 34566677777777777777
Q ss_pred hHHHHHHHHHHHcC
Q 007626 243 DEAVYMFKEYFRLY 256 (595)
Q Consensus 243 ~~A~~~~~~m~~~~ 256 (595)
++|+..|++.++..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777654
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.32 E-value=0.057 Score=50.85 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHH---HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007626 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY---NSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQG 270 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 270 (595)
....+.+.|++++|.+.|+.+.... +-+.... -.++.++.+.+++++|...+++.++..+......|-..+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3334445566666666666655432 1122222 23455556666666666666666665543333333333333
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.077 Score=49.97 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 512 ILIIGHCMKGRMVEAISIFNKMLRI--GCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+..-|.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|.++......
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4555688899999999999999873 4445566777888999999999999998776654
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.28 E-value=0.026 Score=59.24 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHh
Q 007626 399 LPDVVTFSSLIDGYCRN-----GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE--------NRLNDARRFLKQLKW 465 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~ 465 (595)
+.+...|..++.+.... +..+.|..+|++..+.. |-....|..+..++... .++..+.+.......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44556666666554322 12556666777666653 33334444443333221 123334444444333
Q ss_pred C-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007626 466 N-DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDIT 544 (595)
Q Consensus 466 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 544 (595)
. ....++..|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|...+++....+ |...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCch
Confidence 2 123356778777777777899999999999998874 688888999999999999999999999888753 44444
Q ss_pred H
Q 007626 545 V 545 (595)
Q Consensus 545 ~ 545 (595)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.0032 Score=58.82 Aligned_cols=101 Identities=13% Similarity=0.047 Sum_probs=78.8
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHh
Q 007626 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
+-+.+.++|.+|+..|.+.++.. +-|...|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 45677888889999998888876 6778888888888889998888888888887754 334668888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Q 007626 244 EAVYMFKEYFRLYSQPDTWTFNILI 268 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li 268 (595)
+|++.|++.++. .|+..+|-.=+
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHH
Confidence 888888888774 45655554433
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0076 Score=53.39 Aligned_cols=92 Identities=10% Similarity=-0.013 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 440 FTILINALCKENRLNDARRFLKQLKWNDLVP--KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
+..+...+...|++++|...+++.......+ ...++..+...+...|++++|.+.+++..+.. +....++..+...+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3444444445555555555555554332111 12345555555555555555555555555431 11233334444444
Q ss_pred H-------hcCCHHHHHHHHHH
Q 007626 518 C-------MKGRMVEAISIFNK 532 (595)
Q Consensus 518 ~-------~~g~~~~A~~~~~~ 532 (595)
. ..|++++|...+++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHH
Confidence 3 45555544444443
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.24 E-value=0.065 Score=51.95 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=57.0
Q ss_pred HHHhc-CCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-----CCHH-HHHHH
Q 007626 376 GFGKV-GNMVSAEYMRERMLSF----GYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLS-----PNVY-TFTIL 443 (595)
Q Consensus 376 ~~~~~-g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-----p~~~-~~~~l 443 (595)
.|-.. |++++|...|++..+. +... -...+..+...+.+.|++++|.++|++....-.. .+.. .|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 44444 5666666666555431 1000 1234455566667777777777777766543211 1111 12223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC--CCC--HhhHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 007626 444 INALCKENRLNDARRFLKQLKWNDL--VPK--PFMYNPVIDGFCKA--GNVDEANVIVAEME 499 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~--g~~~~A~~l~~~m~ 499 (595)
+-++...|+...|.+.+++.....+ ..+ ......|+.++-.. ..++.|..-|+.+.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3344456677777777776654421 111 23344455554332 23444544444443
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0076 Score=53.39 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=74.6
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007626 472 PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP--DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLI 549 (595)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 549 (595)
...|..+...+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++..+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 5567888888889999999999999998663222 23578889999999999999999999998753 44456667777
Q ss_pred HHHH-------hcCCHHHHHHHHHHHH
Q 007626 550 SCLL-------KGGMPNEAFRIMQRAS 569 (595)
Q Consensus 550 ~~~~-------~~g~~~~A~~~~~~~~ 569 (595)
..+. +.|++++|...++++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 7777 7888886655555443
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.019 Score=50.99 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007626 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN--VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++....... +...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 444455555556666666666665554321111 245555566666666666666666666554322 34455555555
Q ss_pred HHHcCCHHHH
Q 007626 482 FCKAGNVDEA 491 (595)
Q Consensus 482 ~~~~g~~~~A 491 (595)
+...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 5555554443
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.0064 Score=54.30 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007626 387 EYMRERMLSFGYLPDVVTFSSLIDGYCR-----NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLK 461 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (595)
...|+..... ..+..+|..+++.|.+ .|.++-....++.|.+-|+.-|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------- 103 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------- 103 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------
Confidence 4444444222 3577888888888764 36777777778888888888888888888876643 2211
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007626 462 QLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR 522 (595)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 522 (595)
|.. .+..+..-| -.+-+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 104 --------p~n-~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 --------PRN-FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------ccc-HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 111111111 12566789999999999999999999999999965443
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.21 E-value=0.00057 Score=52.57 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007626 450 ENRLNDARRFLKQLKWNDLV-PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAIS 528 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 528 (595)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .+.+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666655432 1333444466666667777777666666 22211 122333344566666777777776
Q ss_pred HHHH
Q 007626 529 IFNK 532 (595)
Q Consensus 529 ~~~~ 532 (595)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.21 E-value=0.0017 Score=47.00 Aligned_cols=59 Identities=24% Similarity=0.199 Sum_probs=35.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 514 IIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
...+...|++++|+..|+++++.. +-+...+..+..++...|++++|..+++++++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344556666666666666666543 33555666666666666666666666666665543
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.003 Score=58.92 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=72.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 007626 446 ALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 524 (595)
-+.+.+++.+|+..|.+.++..+. |+.-|..-..+|++.|.++.|++-.+..+..+ | -..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 356778888888888888877644 67777788888888888888888777777652 3 3457888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 007626 525 EAISIFNKMLRIGCAPDDITVN 546 (595)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~~~~ 546 (595)
+|++.|++.++ +.|+-.+|-
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHH
Confidence 88888888876 456655543
No 184
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.17 E-value=0.011 Score=57.01 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007626 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR-NGQLNQGLKLCDEMKGKNLSPNVYTFTILINA 446 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~ 446 (595)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|..+|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888999999999998653 2234555555554333 56677799999998876 56788888888999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 447 LCKENRLNDARRFLKQLKWNDLVPK---PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
+...++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+. -|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999998865 2222 248999999999999999999999998876 44544444444433
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.03 Score=52.76 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 007626 434 SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG---NVDEANVIVAEMEEKRCKPDKVTF 510 (595)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~~~ 510 (595)
+-|...|-.|..+|...|++..|..-|....+... +++..+..+..++.... ...++..+|++++... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 45666666666666666666666666666665442 35555555555544332 3445666666666553 2244555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007626 511 TILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666666666666666666654
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.11 E-value=0.01 Score=56.36 Aligned_cols=99 Identities=17% Similarity=0.077 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHH
Q 007626 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD----KVTFTILIIGHCMKGRMVEAISIFNKMLRIG--CAPDDITVNS 547 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ 547 (595)
.|...+..+.+.|++++|...|+.+++. .|+ ...+-.+...|...|++++|...|+.+++.- -+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445556777777777777665 233 2355566666777777777777777776521 1122344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007626 548 LISCLLKGGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 574 (595)
++.++...|+.++|.++++++++.++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 566666777777777777777776653
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.34 Score=47.46 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 007626 406 SSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA 485 (595)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (595)
+..|.-+...|+...|.++-.+.. -|+..-|...+.+|+..++|++-.++... .-++.-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444555566555555544431 24555566666666666666655554321 11234566666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
|+..+|..++.++ + +..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 6666666555541 1 133344555666666665543
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.07 E-value=0.039 Score=53.48 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHH
Q 007626 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRS----DGHLP-NSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNS 231 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 231 (595)
..|......|-..|++++|.+.|..... .+-+. -...|......|. ..++++|...+++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHH--------------
Confidence 3677777888888888888888887654 11010 1122333333332 22555555554443
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhh----CCCCC--CHHHHHHHHH
Q 007626 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRI-GEVKKAFEFFYDMGS----FGCSP--DIVTYNTLIS 304 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p--~~~t~~~li~ 304 (595)
+..|.+.|++..|-..+.++- ..|... |++++|.+.|++..+ .| .+ -..++..+..
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 344445555555444444432 223333 455555555544432 11 11 1223344555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC----CCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007626 305 GLCRVNEVARGHELLKEVKFKSE----FSPDVV-TYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~----~~p~~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
.+.+.|++++|.++|+++..... ...++. .|-..+-++...|++..|.+.|++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666666666666665543220 011111 122223344445666666666666554
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.07 E-value=0.024 Score=46.47 Aligned_cols=90 Identities=21% Similarity=0.145 Sum_probs=48.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---H-HHHHHHHHH
Q 007626 443 LINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD---K-VTFTILIIG 516 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~-~~~~~li~~ 516 (595)
+..++-..|+.++|+.+|++....|+... ...+-.+..++...|++++|..++++.... .|+ . .....+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34455566666666666666666654433 234455556666666666666666666544 122 1 111222234
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007626 517 HCMKGRMVEAISIFNKML 534 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~ 534 (595)
+...|+.++|+..+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 455666666666665544
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.04 E-value=0.37 Score=47.25 Aligned_cols=110 Identities=16% Similarity=0.238 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007626 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINAL 447 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~ 447 (595)
.+.+..|.-+...|+...|.++-.+.. .||...|...+.+++..+++++-..+... .. .+.-|-.++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHH
Confidence 345555666777888888877766553 47888899999999999999887776432 21 236688888999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007626 448 CKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAE 497 (595)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 497 (595)
.+.|...+|..+...+ .+..-+..|.++|++.+|.+.-.+
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988887661 235667888899999988766443
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.03 E-value=0.013 Score=52.45 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007626 435 PNVYTFTILINALCKE-----NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVT 509 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 509 (595)
-+..+|..+++.|.+. |.++=....++.|.+.|+.-|..+|+.|++.+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 3555666666665532 4455555555556666666666666666655543 2111 111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007626 510 FTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
+.++..- .-.+.+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111 123566799999999999999999999999999977663
No 192
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.97 E-value=0.47 Score=47.26 Aligned_cols=428 Identities=12% Similarity=0.079 Sum_probs=204.9
Q ss_pred HHHhcCCchHHHHHHHHhhhCCCCCC---C-HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH--HH
Q 007626 129 VIKRLDNPKLGLKFLEFSRVNLSLNH---S-FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSS--CI 202 (595)
Q Consensus 129 ~l~~~~~~~~a~~~~~~~~~~~~~~~---~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~ 202 (595)
+|+..++-..+..+|.-.-....-.| . -..-+.++++|.- ++.+.....+..+.+.. |. ..|-.+..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--GK-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--CC-chHHHHHHHHHHH
Confidence 44555666666666655422111111 1 1223455666653 34555555555554421 21 123333332 33
Q ss_pred hcCChHHHHHHHHhccCC--CCc------------cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC----CCCHHHH
Q 007626 203 RAGKCDAAKGLLSQFRPG--EVT------------MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYS----QPDTWTF 264 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~ 264 (595)
+.+.+++|.+.+..-... +.. +|...-+..++.+.+.|++.++..++++|...-. .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667777777776655433 111 1122224556677777888877777777665432 3567777
Q ss_pred HHHHHHHHhcC--------C-------HHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 007626 265 NILIQGLSRIG--------E-------VKKAFEFFYDMGSF------GCSPDIVTYNTLISGLCRV--NEVARGHELLKE 321 (595)
Q Consensus 265 ~~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~t~~~li~~~~~~--g~~~~A~~~~~~ 321 (595)
+.++-.+.+.= . ++.+.-..++|... .+.|.......++.-..-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 76555554321 1 11111112222110 1222222233333222211 111122222333
Q ss_pred HHhcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007626 322 VKFKSEFSPDV-VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP----SAVTFNVLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 322 ~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
..... +.|+- .....|+..+.+ +.+++..+-+.+....+.+ =..++..++....+.++...|...+.-+...
T Consensus 251 We~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 251 WENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 32222 33332 122233333333 5555555555554432111 1245566666666777777777666665554
Q ss_pred CCCCCHHHHH-------HHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHH---HHHHcCC-HHHHHHHH
Q 007626 397 GYLPDVVTFS-------SLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNV-YTFTILIN---ALCKENR-LNDARRFL 460 (595)
Q Consensus 397 g~~p~~~~~~-------~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~---~~~~~g~-~~~A~~~~ 460 (595)
.|+...-. .+-+..|. .-+...=+.+|+......+ |. .....|+. -+-+.|. -++|..++
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 23332211 12222221 1112233334444433321 11 11111221 2333444 77888888
Q ss_pred HHHHhCCCCCCHhhHHHHHH----HHHHc---CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHHHHH
Q 007626 461 KQLKWNDLVPKPFMYNPVID----GFCKA---GNVDEANVIVAEMEEKRCKPDK----VTFTILIIG--HCMKGRMVEAI 527 (595)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~----~~~~~---g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~--~~~~g~~~~A~ 527 (595)
+.+.+-.. -|..+-|.+.. .|..+ ..+.+-..+-+-+.+.|++|-. ..-|.+..+ +...|++.++.
T Consensus 404 k~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 404 KLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 88776432 13333333322 22221 2333334444444566777643 334444444 34689999887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 528 SIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 528 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
-.-.-..+ +.|++.+|..++-++....++++|..++..+.-
T Consensus 483 ~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 483 LYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 66555554 689999999999999999999999999987654
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.032 Score=51.07 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC-----HHHHHH
Q 007626 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS-----TFMYNS 231 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 231 (595)
.+.+.+++.+...|.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|+.+.+..-..+ ..+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 356677778888888888888888888866566777777778877888888888888886644322222 222233
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007626 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTL 302 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (595)
....+.-.+++..|...|+++...+. .|....|.-.-+..-.|+..+|++.++.|.+. .|...+.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 33445556677777777877776654 45666665555556667778888888877753 4555444433
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.89 E-value=0.26 Score=42.96 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---CCCCHHHH
Q 007626 364 KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN---LSPNVYTF 440 (595)
Q Consensus 364 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~ 440 (595)
.|++..-..|..+....|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 455555555666666666666666666666554444555566666666666666666666666655442 22332 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 007626 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIV 495 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 495 (595)
..+...|...|+...|+.-|+.....- |+...-......+.++|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 334555566666666666666665432 33333333344455556555554433
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.88 E-value=0.0025 Score=46.60 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=25.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555442 11444444555555555555555555555554
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.83 E-value=0.072 Score=43.71 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 270 GLSRIGEVKKAFEFFYDMGSFGCSPD--IVTYNTLISGLCRVNEVARGHELLKEVKF 324 (595)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (595)
++-..|+.++|..+|++....|.... ...+-.+...+...|++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555555555444443322 12233344444445555555555554443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.34 Score=44.60 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH---
Q 007626 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLI--- 303 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li--- 303 (595)
.+-+.++..+.-.|.+.-.+.++.+..+..++.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777778888888888888887777788888888888888888888888888766433333444443333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007626 304 --SGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 304 --~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
..|.-.+++.+|...+.++...+ +.|+..-|.-.-+..-.|+..+|++.++.|++.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445667777777777776554 334444444444444457777888888777764
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.79 E-value=0.0055 Score=44.72 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=36.5
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 007626 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 220 (595)
.+.|++++|+++|+.+.... |-+......++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777777776654 456666677777777777777777777777664
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.06 Score=50.75 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHHcCCCCCHHHH
Q 007626 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQN---NADEAVYMFKEYFRLYSQPDTWTF 264 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~ 264 (595)
+-|...|-.|...|...|+.+.|...|.+..+.. ++++..+..+..++.... ...++..+|+++++..+ -|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 4455555555555555555555555555554432 234444444444444332 23344555555555443 244444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 007626 265 NILIQGLSRIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~ 289 (595)
..|...+...|++.+|...++.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4455555555555555555555553
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.66 E-value=0.044 Score=53.39 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 007626 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTW----TFNILIQGLSRIGEVKKAFEFF 284 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~ 284 (595)
..-+|+.|+....+.+|+..++.|. -|.. .|..|-++|.-.+++++|+++.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 3567888888888999998888774 2433 4555666777777788877764
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.64 E-value=0.0064 Score=45.82 Aligned_cols=63 Identities=32% Similarity=0.376 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 508 VTFTILIIGHCMKGRMVEAISIFNKMLRI----GC-APD-DITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+|+.+...|...|++++|+..|++.++. |- .|+ ..++..++.+|...|++++|+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776642 21 111 34566777777777888888877777654
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.64 E-value=0.0095 Score=42.98 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 480 DGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555442 11344445555555555555555555555544
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.64 E-value=0.009 Score=44.28 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=30.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.|.+.+++++|.+.+++++..+ +.+...+.....++.+.|++++|.+.++++.+..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3455555555555555555543 33444455555555555555555555555555444
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=1.3 Score=47.15 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
+.+--+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-.++-+.+. .+.-|.-...+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444445556666666666655544 4566666666667777777666555443332 2345556666677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007626 519 MKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRI 564 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (595)
+.|+.+||.+++-+.-. .. -...+|.+.|++.+|.++
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 77777777777665422 11 334566666666666654
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.60 E-value=0.38 Score=44.02 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=26.9
Q ss_pred HHHHhcCChHHHHHHHHhccCCC--CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 007626 199 SSCIRAGKCDAAKGLLSQFRPGE--VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYS 257 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (595)
..+...|++++|...|+.+.... -+....+.-.++.++.+.|+++.|...++++++..+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 33444555555555555554321 111222334455555566666666666666555443
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.58 E-value=0.35 Score=47.94 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007626 370 FNVLIDGFGKVGNMVSAEYMRERMLSFG---YLPDVVTFSSLIDGYCR---NGQLNQGLKLCDEMKGKNLSPNVYTFTIL 443 (595)
Q Consensus 370 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 443 (595)
...++-+|....+++...++.+.+.... +.-....--...-++.+ .|+.++|++++..+....-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345556788888888888888887641 11122222234445556 78888888888886555567788888888
Q ss_pred HHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH----HHHHHH---HH-HHHCCC---
Q 007626 444 INALCK---------ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVD----EANVIV---AE-MEEKRC--- 503 (595)
Q Consensus 444 l~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~l~---~~-m~~~g~--- 503 (595)
...|-. ....++|...|.+.-+.. |+...--.++-.+.-.|... +..++- .. ..++|.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 776632 112556666666554333 33322222222222333211 222222 11 112221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007626 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
..|---+.+++.++.-.|++++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 122333455555556666666666666666654
No 207
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.56 E-value=0.012 Score=42.95 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=41.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007626 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG-RMVEAISIFNKMLR 535 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 535 (595)
++..|..+...+...|++++|+..|.+.++.. +-+...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666677777777777777777766653 224556666666677776 57777777776665
No 208
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=1.5 Score=47.13 Aligned_cols=179 Identities=11% Similarity=0.061 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHhccCCCCccCHHHHHH
Q 007626 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFV----SSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNS 231 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 231 (595)
......-+..+++...++-|+.+-.. .+ .+..+...+. ..+.+.|++++|..-|-+.... ++|+.
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~----- 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE----- 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----
Confidence 34566678888999999999887654 22 3333444444 4456789999999988776653 23332
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 007626 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE 311 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 311 (595)
++.-|....++..-..+++.+.+.|. .+...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 45566677778888888999999887 466777889999999999999888877554 2322 1123456667777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 007626 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEM 358 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 358 (595)
.++|..+-..... .......++ -..+++++|++.+..|
T Consensus 479 l~~a~~LA~k~~~------he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK------HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc------CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 8888776655432 233334443 4568899999998876
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.39 E-value=1.1 Score=43.88 Aligned_cols=143 Identities=16% Similarity=0.089 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007626 348 MDKATGIYNEMNSCGIKPSAVTF-NVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCD 426 (595)
Q Consensus 348 ~~~A~~l~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 426 (595)
...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+....|+ .+.. ..+.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--cHHHHHH
Confidence 3444444433333 34554322 2344667788888888888888877643333 3222 22334443 2322222
Q ss_pred HH---hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 007626 427 EM---KGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA-GNVDEANVIVAEMEEK 501 (595)
Q Consensus 427 ~m---~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~ 501 (595)
+. .... +.+......+..+-...|++..|..--+..... .|....|..|.+.-... |+-.++...+.+.++.
T Consensus 317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 22 2221 334556666666667777777776666555533 46666777666665443 7777777777777765
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.37 E-value=0.75 Score=42.06 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=43.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 007626 480 DGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD---DITVNSLISCLLKGG 556 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g 556 (595)
.-|=...-..+|...+..+.+. =...--.+..-|.+.|.+..|..-++.+++. .+-+ ......++.+|.+.|
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT
T ss_pred HHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhC
Confidence 3333344455555544444332 0111223456678888888888888888874 2222 245567788888888
Q ss_pred CHHHHH
Q 007626 557 MPNEAF 562 (595)
Q Consensus 557 ~~~~A~ 562 (595)
..+.|.
T Consensus 193 ~~~~a~ 198 (203)
T PF13525_consen 193 LKQAAD 198 (203)
T ss_dssp -HHHHH
T ss_pred ChHHHH
Confidence 887554
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.29 E-value=0.096 Score=49.79 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=37.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHH
Q 007626 449 KENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC--KPDKVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~ 524 (595)
+.|++++|...|+.+.+..+... +..+-.+...|...|++++|...|+.+.+.-. ......+-.+...+...|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 34444444444444444321110 22344444445555555555555555543310 001222333334444555555
Q ss_pred HHHHHHHHHHH
Q 007626 525 EAISIFNKMLR 535 (595)
Q Consensus 525 ~A~~~~~~m~~ 535 (595)
+|..+|++.++
T Consensus 235 ~A~~~~~~vi~ 245 (263)
T PRK10803 235 KAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.27 E-value=0.11 Score=44.54 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007626 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR-----IGCAPDDITV 545 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 545 (595)
+...++..+...|++++|..+.+.+.... +.|...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455555566666666666666666552 23555666666666666666666666665543 4666666553
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.24 E-value=1.5 Score=43.86 Aligned_cols=367 Identities=13% Similarity=0.140 Sum_probs=213.5
Q ss_pred HHHcCCchHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHhccC----CCCccCHH
Q 007626 166 LCEMGLHDSVQVVFDYMRSD--GHLP------------NSPMIEFFVSSCIRAGKCDAAKGLLSQFRP----GEVTMSTF 227 (595)
Q Consensus 166 ~~~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 227 (595)
.-+.+.++.|++.+..-.+. +..+ |-..=+..+.++...|++.++..+++++.. +...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 45889999999988876653 2222 112224567788899999999999988764 34557899
Q ss_pred HHHHHHHHHHHcC--------C-------HhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcC--CHHHHHHHH
Q 007626 228 MYNSLLNALVKQN--------N-------ADEAVYMFKEYFRLY------SQPDTWTFNILIQGLSRIG--EVKKAFEFF 284 (595)
Q Consensus 228 ~~~~li~~~~~~g--------~-------~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g--~~~~A~~~~ 284 (595)
+|+.++-.+.+.= . ++.+.-..++|.... ..|....+..++....-.. +..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 9998777766531 1 122222222332211 1233333333333332221 122223333
Q ss_pred HHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007626 285 YDMGSFGCSPDIVT-YNTLISGLCRVNEVARGHELLKEVKFKSEF----SPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 285 ~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
......-+.|+-.. ...++..+.. +.+++..+-+.+.... . ..=+.++..++....+.++...|.+.+.-+.
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~-i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK-IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344445555332 2334444443 5666666655554321 1 1124578888899999999999999998887
Q ss_pred HCCCCCCHHHH-------HHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHH-HHHHHH---HHHHHcCC-HHHHHH
Q 007626 360 SCGIKPSAVTF-------NVLIDGFGKV----GNMVSAEYMRERMLSFGYLPDVV-TFSSLI---DGYCRNGQ-LNQGLK 423 (595)
Q Consensus 360 ~~g~~p~~~~~-------~~ll~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~-~~~~li---~~~~~~g~-~~~A~~ 423 (595)
-. .|+...- ..+-+..+.. -+...-..+|+......+ |.. .-..|+ .-+.+.|. -++|+.
T Consensus 326 ~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 326 IL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred hc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 64 3544321 1122222311 123334555666555432 221 222222 34556666 889999
Q ss_pred HHHHHhhCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHH--HHHcCCHHH
Q 007626 424 LCDEMKGKNLSPNVYTFTILI----NALCK---ENRLNDARRFLKQLKWNDLVPK----PFMYNPVIDG--FCKAGNVDE 490 (595)
Q Consensus 424 l~~~m~~~~~~p~~~~~~~ll----~~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~--~~~~g~~~~ 490 (595)
+++.+.+-. +-|...-+.+. .+|.+ ...+..-..+-+-+.+.|++|- ...-|.|.++ +...|++.+
T Consensus 402 LLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 402 LLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 999887642 33443333322 23322 2345555556666677787764 3345555544 456799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007626 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNS 547 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 547 (595)
+.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..++++
T Consensus 481 c~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 481 CYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 8766555554 5799999999999999999999999999865 788777764
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=2.1 Score=45.50 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.+.+--+..+...|+..+|.++-.+.. -||...|..-+.++...+++++-+++-+.+.. +.-|.-...+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 344555555666666666666665554 35666666666677777777666655544421 23344455666
Q ss_pred HhcCCHHHHHHHHHHH
Q 007626 553 LKGGMPNEAFRIMQRA 568 (595)
Q Consensus 553 ~~~g~~~~A~~~~~~~ 568 (595)
.+.|+.+||.+++-+.
T Consensus 755 ~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhcccHHHHhhhhhcc
Confidence 7777777777666544
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.22 E-value=0.06 Score=46.24 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=57.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 447 LCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 526 (595)
+...|++++|..+|+-+...++. +..-+..|..++-..+++++|...|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44677777777777777666543 455566666667777777777777776654432 2444455566677777777777
Q ss_pred HHHHHHHHH
Q 007626 527 ISIFNKMLR 535 (595)
Q Consensus 527 ~~~~~~m~~ 535 (595)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777777665
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.01 E-value=1.8 Score=43.04 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007626 336 TSVISGYCKLGKMDKATGIYNEMNSCG---IKPSAVTFNVLIDGFGK---VGNMVSAEYMRERMLSFGYLPDVVTFSSLI 409 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 409 (595)
..++-+|....+++..+++.+.|.... +.-....--...-++.+ .|+.++|..++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556888888888888888887641 11122222233445556 788888888888866555567888888887
Q ss_pred HHHH----H-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHH---HH-HHhCC---CC
Q 007626 410 DGYC----R-----NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLN----DARRFL---KQ-LKWND---LV 469 (595)
Q Consensus 410 ~~~~----~-----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~----~A~~~~---~~-~~~~~---~~ 469 (595)
..|- . ....++|...|.+.-+.. ||.++--.++..+...|... +..++- .. +.+.| ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 7663 2 123667777777665442 44433222333333344322 222322 11 11222 22
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007626 470 PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.+...+..++.+..-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 45556678888888888888888888888866
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.098 Score=48.72 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 007626 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRC--KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI-GCAP-DDITVNSLI 549 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~l~ 549 (595)
.|+.-+..+ +.|++..|..-|...++... .-....+-.|..++...|++++|..+|..+.+. +-.| -+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 56778888888888887621 112334556788888999999999999888873 2222 346778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007626 550 SCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
.+..+.|+.++|...|++..+.++....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 8899999999999999999988875543
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.97 E-value=0.02 Score=43.04 Aligned_cols=63 Identities=24% Similarity=0.189 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEK----RC-KPD-KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777777777777777776532 11 112 44567777777788888888888777654
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.95 E-value=0.74 Score=37.77 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+....+..+..+..+|+-|.-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.++-++|
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33445556666666777777777776665533 6667777777777777777777777777776655
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.90 E-value=0.055 Score=46.52 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHHHH
Q 007626 228 MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG-----SFGCSPDIVTYN 300 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~~ 300 (595)
+...++..+...|+++.|..+.+.+....+ -|...|..+|.+|...|+..+|.+.|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 456677778888999999999999988775 588899999999999999999999988774 357888776543
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.89 E-value=1.1 Score=46.74 Aligned_cols=217 Identities=9% Similarity=0.073 Sum_probs=105.6
Q ss_pred HHHHHHHHHHcCCHhHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHH
Q 007626 229 YNSLLNALVKQNNADEAVYM---------FKEYFRLYSQPDTWTFNILIQGLSRIGEVK--KAFEFFYDMGSFGCSPDIV 297 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~---------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~ 297 (595)
+.+-+..|...|.+++|.++ ++.+... ..+...++..=.+|.+.++.. +...-+++|.+.|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 34444556667777776542 1111111 123444555666777766543 4555567778888778776
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007626 298 TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS-----VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV 372 (595)
Q Consensus 298 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-----ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 372 (595)
.. ...++-.|++.+|-++|.+--... .-...|+- +..-+...|..++-..+.++-.+. ..+..-=.+
T Consensus 637 Ll---A~~~Ay~gKF~EAAklFk~~G~en---RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePka 708 (1081)
T KOG1538|consen 637 LL---ADVFAYQGKFHEAAKLFKRSGHEN---RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKA 708 (1081)
T ss_pred HH---HHHHHhhhhHHHHHHHHHHcCchh---hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHH
Confidence 53 344556788888888887643211 01111111 122233333333333333222110 011111122
Q ss_pred HHHHHHhcCCHHHHHHHHH------HHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007626 373 LIDGFGKVGNMVSAEYMRE------RMLSFGYL---PDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTIL 443 (595)
Q Consensus 373 ll~~~~~~g~~~~A~~~~~------~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 443 (595)
....+...|+.++|..+.. .+.+-+.+ .+..+...+...+-+...+.-|.++|..|-+. ..+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 3344455666666544321 11111111 23334444444455555666677777666433 235
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 007626 444 INALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~ 464 (595)
++.....++|++|..+-+...
T Consensus 780 VqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhheeecccchHhHhhhhhCc
Confidence 566667777777777766554
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.83 E-value=2.3 Score=42.52 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007626 367 AVTFNVLIDGFGKVGNMVSAEYMRERMLSFG-YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN 445 (595)
Q Consensus 367 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 445 (595)
...|...++...+..-++.|..+|-+..+.| +.+++..++++|..++ .|+..-|..+|+--... ++.+..--...+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4566777777778888888899999888887 5677888888888776 47778888888876554 2333333345566
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 446 ALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
.+...++-+.|..+|+..+.+- ..+ ...|..+|+.-..-|+...+..+=++|.+. -|...+.....+-|.
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 6777888888888888544321 111 457888888888888888888888888765 445444444444443
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.79 E-value=0.18 Score=41.85 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007626 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILII 515 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 515 (595)
|..++..++.++++.|+++....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44566777777777777777777665542 21111000 0000 0112345678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 007626 516 GHCMKGRMVEAISIFNKMLR-IGCAPDDITVNSLISCLL 553 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~ 553 (595)
+|+.+|++..|+++++...+ .+++.+..+|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888776 567777888887777443
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=95.75 E-value=0.79 Score=39.51 Aligned_cols=87 Identities=8% Similarity=-0.160 Sum_probs=46.3
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007626 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
+...|++++|..+|.-+...+ +.+..-+..|..++-..+++++|...+......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 345566666666666554443 22333344455555555666666666655544432 2444445555556666666666
Q ss_pred HHHHHHHHH
Q 007626 492 NVIVAEMEE 500 (595)
Q Consensus 492 ~~l~~~m~~ 500 (595)
..-|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666655554
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.74 E-value=0.17 Score=41.93 Aligned_cols=50 Identities=6% Similarity=-0.001 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 007626 292 CSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISG 341 (595)
Q Consensus 292 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~ 341 (595)
..|+..+..+++.+|+..+++..|.++++.+....+++.+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555555555555555555555555555555554444445555555543
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.71 E-value=0.073 Score=39.28 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=21.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
|.+.+++++|.++++.+.+.+ +.+...+......+...|++++|...|++.++
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444444444332 11233333334444444444444444444443
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.68 E-value=2.6 Score=42.10 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 007626 437 VYTFTILINALCKENRLNDARRFLKQLKWND-LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTF-TILI 514 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~li 514 (595)
..+|...+++-.+...++.|..+|-+..+.+ ..++..++++++..++ .|+..-|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456666776667777788888888877776 4566777777777665 46677777777765443 2444444 4555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 515 IGHCMKGRMVEAISIFNKMLRIGCAPD--DITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
.-+...++-+.|..+|+..+.. +..+ ..+|..+|+.-.+-|+...+..+=+++.+..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 5666777778888888765542 2222 4577777777777788877777666665543
No 228
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.59 E-value=0.83 Score=47.47 Aligned_cols=253 Identities=13% Similarity=0.151 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH---------HHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCC
Q 007626 259 PDTWTFNILIQGLSRIGEVKKAFEFF---------YDMGSFGCSPDIVTYNTLISGLCRVNEVA--RGHELLKEVKFKSE 327 (595)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~~~~~~~~~~~ 327 (595)
+-.+.+.+-+..|...|.+++|.++- +.+... ..+.-.++..=++|.+..+.. +...-+++++.++
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg- 630 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG- 630 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC-
Confidence 34455666677788889888887652 111110 112233444555666655532 3333345555554
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhC--CC-C
Q 007626 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFN-----VLIDGFGKVGNMVSAEYMRERMLSF--GY-L 399 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-----~ll~~~~~~g~~~~A~~~~~~m~~~--g~-~ 399 (595)
-.|+... +...++-.|++.+|-++|.+--..+ .-...|+ -...-|...|..++-..+.++-.+. .+ +
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence 3465443 2334455677777777765432111 0001111 1223334444444433333322110 01 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH------HhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007626 400 PDVVTFSSLIDGYCRNGQLNQGLKLCDE------MKGKN---LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVP 470 (595)
Q Consensus 400 p~~~~~~~li~~~~~~g~~~~A~~l~~~------m~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p 470 (595)
|. +....+...|+.++|..+.-+ +.+-+ -..+..+...+...+.+...+.-|.++|..|-.
T Consensus 706 Pk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----- 775 (1081)
T KOG1538|consen 706 PK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----- 775 (1081)
T ss_pred cH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----
Confidence 21 223344455666666554321 11111 122344555555555666677777788776642
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV-----------TFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...+++.....+++++|..+-+..-+. .||+. -|.-.-.+|.+.|+..||.++++++..
T Consensus 776 ----~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 ----LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ----HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 234667777888999998888776553 34432 133334567777777777777777654
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.41 E-value=0.1 Score=52.43 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=70.4
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007626 470 PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK----VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITV 545 (595)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 545 (595)
.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 35778999999999999999999999999887 4553 458999999999999999999999999853 22 22
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHhcC
Q 007626 546 NSLIS--CLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 546 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
..+.. .+....+.++..++++.+.+-+
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 21111 1122234456666676666554
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=2.1 Score=39.20 Aligned_cols=208 Identities=10% Similarity=0.070 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007626 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..-..+|....++++|...+.+..+. ...+...| . ..+.++.|.-+.+++.+. +--+..|+--...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-h------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-H------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-H------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 446777778888899999998888777641 12222222 1 223345566666666543 2234456667778
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CC--CCCCHHHHHHHHHHHHhcC
Q 007626 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS---FG--CSPDIVTYNTLISGLCRVN 310 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g--~~p~~~t~~~li~~~~~~g 310 (595)
|..+|..+.|-..+++.-+. ...-++++|+++|++... .+ ...-...+...-..+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88888888877777665431 122344555555554431 00 0001122333344555556
Q ss_pred CHHHHHHHHHHHHhc-C--CCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCH
Q 007626 311 EVARGHELLKEVKFK-S--EFSPDV-VTYTSVISGYCKLGKMDKATGIYNEMNSCG---IKPSAVTFNVLIDGFGKVGNM 383 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~-~--~~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~ 383 (595)
++++|-..+.+-..- . .--++. ..|-..|-.+.-..++..|.+.+++--+.+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 666554444332110 0 001111 234444555556667777777777744422 122445566666554 45666
Q ss_pred HHHHHHH
Q 007626 384 VSAEYMR 390 (595)
Q Consensus 384 ~~A~~~~ 390 (595)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6655544
No 231
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.19 E-value=4.7 Score=41.98 Aligned_cols=183 Identities=13% Similarity=0.055 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCHHHHHHH
Q 007626 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLS--PNVYTFTIL 443 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~l 443 (595)
+..+|..-+.--.+.|+.+.+.-++++..-. +..=...|-..+.-....|+.+-|..++....+--++ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456666677677778888777777776532 1111234444444455557777777766655443322 222222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHHH--
Q 007626 444 INALCKENRLNDARRFLKQLKWNDLVPK-PFMYNPVIDGFCKAGNVDEAN---VIVAEMEEKRCKPDKVTFTILIIGH-- 517 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~l~~~m~~~g~~p~~~~~~~li~~~-- 517 (595)
+ .-..|++..|..+++.+.+.- |+ ...-..-+....+.|+.+.+. +++....+... +......+..-+
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFAR 448 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHH
Confidence 2 234578888888888877654 33 222222334445667777776 33333332211 222222222222
Q ss_pred ---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007626 518 ---CMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGG 556 (595)
Q Consensus 518 ---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 556 (595)
.-.++.+.|..++.++.+. ++++...|..+++.....+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2367888888888888774 4667777777777665544
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.11 E-value=0.5 Score=38.62 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=26.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007626 447 LCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+...|+++.|++.|.+....-+. .+..||.-..++.-.|+.++|++=+++..+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 44455555555555554433221 3445555555555555555555555554443
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.10 E-value=0.46 Score=47.86 Aligned_cols=67 Identities=9% Similarity=-0.130 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 007626 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS---PMIEFFVSSCIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 220 (595)
+.+...|+.+..+|.+.|++++|+..|++.++.. +-+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3577899999999999999999999999988875 3333 35888999999999999999999998774
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.02 E-value=0.85 Score=46.98 Aligned_cols=156 Identities=14% Similarity=0.145 Sum_probs=88.8
Q ss_pred HHHHcCCHhHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 007626 235 ALVKQNNADEAVYMFK--EYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEV 312 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~--~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 312 (595)
...-.|+++++.++.+ ++.. .-...-.+.++..+.+.|..+.|+++-.+-. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 3445677777665554 2211 1124456777777777888887777654321 133445567777
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 313 ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRER 392 (595)
Q Consensus 313 ~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 392 (595)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.
T Consensus 335 ~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 7777664433 3566788888888888888888887776542 44566667777777777777766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007626 393 MLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 393 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
....| -++....++.-.|++++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66654 234444455556777776666554
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.47 Score=46.71 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007626 403 VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482 (595)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (595)
.++..+.-+|.+.+++.+|+...++.+..+ ++|......-..+|...|+++.|+..|+.+++..+. |..+-+.|+..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 456667777777788888888777777765 667777777777777778888888888877766532 444555555554
Q ss_pred HHcCCHH-HHHHHHHHHHHC
Q 007626 483 CKAGNVD-EANVIVAEMEEK 501 (595)
Q Consensus 483 ~~~g~~~-~A~~l~~~m~~~ 501 (595)
-+..... ...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 4444333 336666666543
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=2.7 Score=39.88 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=8.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHH
Q 007626 232 LLNALVKQNNADEAVYMFKEY 252 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m 252 (595)
++.+|...|+.+.|..++..+
T Consensus 174 la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhC
Confidence 344444444444444444433
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.93 E-value=2 Score=36.38 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=68.0
Q ss_pred CchhHHHHHHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 122 SPLNSLEVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSC 201 (595)
Q Consensus 122 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 201 (595)
+++.+...+...+.+.....|.++...... .+...++.++..|++.+. .+..+.+.. ..+......+++.|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHH
Confidence 344444444444566677777777655432 455677777777776532 333333331 12233445566667
Q ss_pred HhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHc-CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007626 202 IRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQ-NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLS 272 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 272 (595)
.+.+.++++..++.++.. +...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777777777766532 11123333333 5666666665541 24555666555544
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.61 Score=45.96 Aligned_cols=61 Identities=18% Similarity=0.074 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007626 228 MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (595)
+++.|.-++.+.+++..|+...++.+..++ +|+-..---..++...|+++.|...|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 445555556666666666666666655543 4555554555566666666666666666654
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.75 Score=43.97 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCHH
Q 007626 378 GKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK---NLSPNVYTFTILINALCKENRLN 454 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~ 454 (595)
-..|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++... ++|...+...++.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456667777777777664 4556777777777788888887777777777654 22323333344445556778888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007626 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK---RCKPDKVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
+|++.-++..+.+. .|.-.-.++...+--.|++.++.++..+-... +.-.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 88888877776653 35666666777777777888887776554322 000011223333334455677888888887
Q ss_pred HHH
Q 007626 532 KML 534 (595)
Q Consensus 532 ~m~ 534 (595)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 544
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.70 E-value=2.2 Score=44.53 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHH
Q 007626 450 ENRLNDARRFLKQLKWNDLVPKPFMYNP-VIDGFCKAGNVDEANVIVAEMEEKR--C-KPDKVTFTILIIGHCMKGRMVE 525 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~~~~~li~~~~~~g~~~~ 525 (595)
....+.|.++++.+...- |+...|.. -.+.+...|++++|.+.|++..... . ......+--+.+.+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 345666777777766542 44433322 2344556677777777777654311 0 1123344555666777777888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHhc
Q 007626 526 AISIFNKMLRIGCAPDDITVNSLIS-CLLKGGMP-------NEAFRIMQRASED 571 (595)
Q Consensus 526 A~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~~ 571 (595)
|...|.++.+.. ..+..+|.-+.- ++...|+. ++|.++++++..-
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888777777643 334444443332 44566666 7777777666543
No 241
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.68 E-value=4.4 Score=39.10 Aligned_cols=165 Identities=9% Similarity=0.082 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 007626 403 VTFSSLIDGYCRNGQLN---QGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVI 479 (595)
Q Consensus 403 ~~~~~li~~~~~~g~~~---~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 479 (595)
.++..++.+|...+..+ +|..+++.+... .+-.+.++..-+..+.+.++.+++.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 35566677777666543 455566666443 2323455555566666677888888888888765321 223444444
Q ss_pred HHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHH---HHhc------CCHHHHHHHHHHHHH-CCCCCCHHHH
Q 007626 480 DGFCK--AGNVDEANVIVAEMEEKRCKPDKVTF--TILIIG---HCMK------GRMVEAISIFNKMLR-IGCAPDDITV 545 (595)
Q Consensus 480 ~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~~~--~~li~~---~~~~------g~~~~A~~~~~~m~~-~g~~p~~~~~ 545 (595)
..+.. ......|...+..+....+.|....| ..++.. .... ++.+....+++...+ .+.+.+..+.
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44421 12345566666666555455544311 111111 1111 124445555554333 2334444443
Q ss_pred HHH-------HHHHHhcCCHHHHHHHHHHHH
Q 007626 546 NSL-------ISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 546 ~~l-------~~~~~~~g~~~~A~~~~~~~~ 569 (595)
.++ +..+.+.+++++|.++++-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333 334567889999999998655
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.67 E-value=3.4 Score=37.68 Aligned_cols=201 Identities=17% Similarity=0.093 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-H
Q 007626 369 TFNVLIDGFGKVGNMVSAEYMRERMLSF-GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN-A 446 (595)
Q Consensus 369 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~-~ 446 (595)
.+......+...+++..+...+...... ........+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3333444444444444444444443321 112233333444444444444455555554444332111 111111111 4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 007626 447 LCKENRLNDARRFLKQLKWNDL--VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRM 523 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 523 (595)
+...|+++.|...+........ ......+......+...++.+.+...+.+..+.. .. ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 4455555555555555433111 0122222333333444555555555555555441 11 234455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+.|...+....... +.....+..+...+...|..+++...+++..+..
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56655555555432 1113333333333334455555555555555443
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.52 E-value=1.5 Score=42.56 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 515 IGHCMKGRMVEAISIFNKMLR----IGCAPD-DITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
.++...|+.-+|.+..++..+ .|-.+. ......+.+.|...|+.+.|..-++.
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 344445555555555554443 221111 12233445555555555555554443
No 244
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.52 E-value=4 Score=37.93 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 513 LIIGHCMKGRMVEAISIFNKMLRIGCAPDD---ITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+..-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|.+.-+-+....+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 445678899999999999999985 33333 4455677899999999999997666655443
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=94.51 E-value=4.5 Score=41.10 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007626 453 LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 453 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
..+|.++.+...+.+. .|+.....+..+..-.++++.|..+|++....+ || ..+|-.....+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555555555553 255555555555555566666666666666542 32 3344444444555666666666666
Q ss_pred HHHH
Q 007626 532 KMLR 535 (595)
Q Consensus 532 ~m~~ 535 (595)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 6554
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.41 E-value=1.3 Score=37.18 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=32.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007626 447 LCKENRLNDARRFLKQLKWNDLVP--KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
..+.|++++|.+.|+.+..+-+.. ...+--.|+.+|.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345666677766666666542211 2344555666666666666666666666655
No 247
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.38 E-value=5.7 Score=39.12 Aligned_cols=280 Identities=16% Similarity=0.124 Sum_probs=149.6
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH----HHHhcCCH
Q 007626 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQG--LSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS----GLCRVNEV 312 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~----~~~~~g~~ 312 (595)
.|+-..|.++-.+-.+. +..|....-.|+.+ -.-.|+.+.|.+-|+.|.. |+.|-..=++ .--+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45666666655544321 22344444344332 3345788888888888864 2233222222 22356777
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHh---cCCHHHH
Q 007626 313 ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCG-IKPSAVT--FNVLIDGFGK---VGNMVSA 386 (595)
Q Consensus 313 ~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~--~~~ll~~~~~---~g~~~~A 386 (595)
+.|...-+..-... +.-...+...+...|..|+++.|+++.+.-++.. +.++..- -..|+.+-.. ..+...|
T Consensus 171 eaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 77777777665543 1223567778888888888888888887765532 2333321 1222222111 1234445
Q ss_pred HHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007626 387 EYMRERMLSFGYLPDVVTFS-SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
...-.+..+. .||.+--. .-..++.+.|+..++-.+++.+-+....|+. .. +..+.+.|+ .+..-+++...
T Consensus 249 r~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHH
Confidence 5444444432 45533222 2235677778888888888877776433332 21 112233443 23333333221
Q ss_pred C-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 007626 466 N-DLVP-KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM-KGRMVEAISIFNKMLRI 536 (595)
Q Consensus 466 ~-~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 536 (595)
. .++| +..+...+..+-...|++..|..--+..... .|....|..|...-.. .|+-.++..++-+.++.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1 1222 3455566666666777777776655555443 5666666666655443 37777777777776654
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.30 E-value=3.3 Score=43.31 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 007626 370 FNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV------VTFSSLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNVYT 439 (595)
Q Consensus 370 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~ 439 (595)
+..++...+=.||-+.+.+.+.+..+.+-.-.+ -.|..++..++. ..+.+.|.+++..+... -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555666667777777777766553211111 233344433332 44677788888888766 345444
Q ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007626 440 FTI-LINALCKENRLNDARRFLKQLKWND---LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILII 515 (595)
Q Consensus 440 ~~~-ll~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 515 (595)
|.. -...+...|++++|.+.++...... .......+--+...+.-..++++|.+.|..+.+.. ..+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 433 3345566788888888888654311 11223345556666777788888888888888753 224445544443
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHH
Q 007626 516 GH-CMKGRM-------VEAISIFNKMLR 535 (595)
Q Consensus 516 ~~-~~~g~~-------~~A~~~~~~m~~ 535 (595)
+| ...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 346666 777777776543
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.30 E-value=0.8 Score=42.72 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH
Q 007626 188 LPNSPMIEFFVSSCIRA-----GKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTW 262 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 262 (595)
..|..+|...+..+... +.++-....++.|.+.|+..|..+|+.|++.+-+..-... .+|++..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~F--------- 132 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKVF--------- 132 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHHH---------
Confidence 45666776666665433 4455555666667777777777777777766544321111 1121111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 007626 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE 311 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 311 (595)
-.|- .+-+-++.++++|...|+.||..+-..|+.++.+.+.
T Consensus 133 ------~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 ------LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111 1224577888889888999998888888888887765
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.28 E-value=2.6 Score=43.51 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=67.2
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHh
Q 007626 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
....-.++++++.++.+.-.-.. .-.....+.+++.+-+.|..+.|+++... + ..-.+...+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHH
Confidence 33444555666555553111000 01133455555555555655555554421 1 11233444556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 244 EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 555444332 3455566666666666666666655554431 3344444555555555555554444
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007626 324 FKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 324 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
..+ -++....++.-.|+.++..+++.
T Consensus 401 ~~~-------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERG-------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred Hcc-------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 332 13333333344455555554443
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.25 E-value=4.6 Score=37.55 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=42.6
Q ss_pred hcCChHHHHHHHHhccCCC--CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007626 203 RAGKCDAAKGLLSQFRPGE--VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLS 272 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 272 (595)
+.|++++|...|+.+.... -+-...+.-.++-++-+.+++++|+...++..+..+......|-.-|.+++
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 5666666666666665431 122344555566666777777777777777777665545555555555555
No 252
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.16 E-value=7.5 Score=39.64 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=57.7
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHhccCCCCccC
Q 007626 147 RVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI-RAGKCDAAKGLLSQFRPGEVTMS 225 (595)
Q Consensus 147 ~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~ 225 (595)
+.-..++.|+..|..-+..+-+.+.+.+.-.+|..|.... +.++..|.....-.. ...+++.|..+|....+.+ +.+
T Consensus 96 ~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pds 173 (568)
T KOG2396|consen 96 RATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDS 173 (568)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCC
Confidence 3445567799999988888777777999999999998854 455555544444333 3344888889988887765 334
Q ss_pred HHHHHHHH
Q 007626 226 TFMYNSLL 233 (595)
Q Consensus 226 ~~~~~~li 233 (595)
+..|....
T Consensus 174 p~Lw~eyf 181 (568)
T KOG2396|consen 174 PKLWKEYF 181 (568)
T ss_pred hHHHHHHH
Confidence 55554433
No 253
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.13 E-value=7.9 Score=41.53 Aligned_cols=279 Identities=13% Similarity=0.031 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHhc---CCCCCCHhhHHHHHHHHHhcC--
Q 007626 277 VKKAFEFFYDMGSFGCSPDIVTYNTLIS----G-LCRVNEVARGHELLKEVKFK---SEFSPDVVTYTSVISGYCKLG-- 346 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~----~-~~~~g~~~~A~~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~g-- 346 (595)
...|+++++...+.| +......+.. + +....+.+.|+.+|+..... .-..-.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 467888888887766 3333322222 2 34567899999999888651 001113445667777777643
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCH
Q 007626 347 ---KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK-VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC----RNGQL 418 (595)
Q Consensus 347 ---~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~ 418 (595)
+.+.|..+|....+.| .|+...+-..+..... ..+...|..+|......|.. ..+-.+..+|. ...+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCH
Confidence 5677999999988887 4555544444333333 34678899999999888743 22222222222 23478
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HH---HH----cCCHHH
Q 007626 419 NQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVID-GF---CK----AGNVDE 490 (595)
Q Consensus 419 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~-~~---~~----~g~~~~ 490 (595)
+.|..++.+..+.| .|-..--...+..+.. ++++.+.-.+..+.+.+.. ...+-...+. .. .. ..+.+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhH
Confidence 89999999988887 3332222223333333 7777777777777766644 2222222211 11 11 125566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007626 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK----GGMPNEAF 562 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 562 (595)
+..++.+....| +......+...|.. ..+++.|...+......+ ....-.+...+-. .. +..|.
T Consensus 458 ~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 777777776665 55555666655544 235788888888777654 4444444444422 23 68888
Q ss_pred HHHHHHHhcCC
Q 007626 563 RIMQRASEDQN 573 (595)
Q Consensus 563 ~~~~~~~~~~~ 573 (595)
++++.+.+.+.
T Consensus 530 ~~~~~~~~~~~ 540 (552)
T KOG1550|consen 530 RYYDQASEEDS 540 (552)
T ss_pred HHHHHHHhcCc
Confidence 88888877543
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=4.3 Score=38.56 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=93.1
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007626 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
...+...|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678999999999999998865 4456677889999999999999999999987643222222222334555555555
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC
Q 007626 243 DEAVYMFKEYFRLYSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC-SPDIVTYNTLISGLCRVN 310 (595)
Q Consensus 243 ~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g 310 (595)
.+...+-.+.-. .| |...-..+...+...|+.++|++.+-.+..... .-|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 554444444443 34 666666777888888888888877666653211 123333444444444333
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.08 E-value=0.78 Score=42.78 Aligned_cols=87 Identities=17% Similarity=0.130 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC----------------CHHHHHH
Q 007626 435 PNVYTFTILINALCK-----ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG----------------NVDEANV 493 (595)
Q Consensus 435 p~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A~~ 493 (595)
-|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+-. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 356667776666643 3456666667777888888888888888887764432 1223455
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007626 494 IVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 494 l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
++++|...|+.||..+-..++.++.+.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 5555555555555555555555554444
No 256
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.01 E-value=2.9 Score=34.40 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007626 336 TSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 397 (595)
...+..+.+.|+-+.-.+++.++...+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444445555555555555544322 3444444455555555555555555555554444
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=3.9 Score=39.34 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=115.5
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC---CCccCHHHHHHHHHHHHHcC
Q 007626 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG---EVTMSTFMYNSLLNALVKQN 240 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g 240 (595)
..+-..|++.+|-..++++.+.- |-|...+...=.+|.-.|+.+.-...++++... +++....+...+.-++..+|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34456788888888899888753 778888888889999999999999999988654 33434444456666777899
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 007626 241 NADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD---IVTYNTLISGLCRVNEVARGHE 317 (595)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~ 317 (595)
-+++|.+.-++..+.+. -|.++-.++.+.+--.|++.++.++..+-...=-..+ ...|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999999999888764 6888999999999999999999998775432100000 1111122223456688999999
Q ss_pred HHHHHH
Q 007626 318 LLKEVK 323 (595)
Q Consensus 318 ~~~~~~ 323 (595)
+|+.-.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 987644
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.95 E-value=14 Score=41.92 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007626 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC 483 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (595)
.|.+..+.+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|..+..++....-. -..+-..|+..+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence 3444445555667777777666654322 23566777778888888877766532100 1112256667777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
..++.-+|-++..+.... | .-.+..+++...+++|+.+....
T Consensus 1011 e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 778777777777766543 1 22333455555667776655443
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.81 E-value=0.81 Score=37.41 Aligned_cols=94 Identities=15% Similarity=-0.050 Sum_probs=69.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHH---HHHHHHHHc
Q 007626 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYN---SLLNALVKQ 239 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~li~~~~~~ 239 (595)
.-++...|+++.|++.|.+....- +-....||.-..++.-.|+.++|++-+++..+..-+.+...+. .-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 346788899999999999888754 5677789999999999999999988888876643233333333 334456677
Q ss_pred CCHhHHHHHHHHHHHcCC
Q 007626 240 NNADEAVYMFKEYFRLYS 257 (595)
Q Consensus 240 g~~~~A~~~~~~m~~~~~ 257 (595)
|+-+.|..-|+...+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888888777664
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.74 E-value=1.4 Score=37.01 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=51.4
Q ss_pred HHHHHhcCChHHHHHHHHhccCCC--CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007626 198 VSSCIRAGKCDAAKGLLSQFRPGE--VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG 275 (595)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 275 (595)
.....+.|++++|.+.|+.+...- -+-...+.-.|+.+|.+.+++++|...+++.++..+......|-..+.+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 334446777777777777776541 123345556677888888888888888888888776544555666666655543
Q ss_pred C
Q 007626 276 E 276 (595)
Q Consensus 276 ~ 276 (595)
.
T Consensus 97 ~ 97 (142)
T PF13512_consen 97 Q 97 (142)
T ss_pred H
Confidence 3
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.67 E-value=0.066 Score=34.98 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007626 545 VNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
+..+..+|.+.|++++|+++++++++..+.+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 334444444455555555555554444444333
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.58 E-value=16 Score=41.44 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=71.8
Q ss_pred CCCHhhHHH----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007626 329 SPDVVTYTS----VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVT 404 (595)
Q Consensus 329 ~p~~~~~~~----ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 404 (595)
.|+...+.. ....+...+++++|.-.|+..-+ ..-.+.+|-..|+|.+|..+..++... .|...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 355544443 34444556777777777665422 123567788888888888888876542 22222
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007626 405 --FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQL 463 (595)
Q Consensus 405 --~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (595)
-..|+.-+...++.-+|-++..+.... ..-.+..|++...+++|..+....
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 256777788888888888888776543 123444566666777777665443
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.55 E-value=7.5 Score=37.53 Aligned_cols=17 Identities=35% Similarity=0.124 Sum_probs=10.6
Q ss_pred HHHcCCHHHHHHHHHHH
Q 007626 482 FCKAGNVDEANVIVAEM 498 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m 498 (595)
+.+.+++++|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 34567777777776643
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.53 E-value=4.1 Score=34.47 Aligned_cols=84 Identities=17% Similarity=0.060 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 007626 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG 486 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (595)
.++..+...+.......+++.+...+ +.+...++.++..|++.+ ..+..+.++. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555555444 244445555555555432 2222233221 112223334555555555
Q ss_pred CHHHHHHHHHHH
Q 007626 487 NVDEANVIVAEM 498 (595)
Q Consensus 487 ~~~~A~~l~~~m 498 (595)
-++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
No 265
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.46 E-value=1.3 Score=41.35 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007626 440 FTILINALCKENRLNDARRFLKQLKWNDLV-P-KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+..|..++...|++++|...|..+.+.-.. | -+..+--|.....+.|+.++|...|++..+.
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333444444444444444444444432111 0 1234444444444455555555555554443
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.30 E-value=6.2 Score=35.84 Aligned_cols=201 Identities=17% Similarity=0.080 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 007626 333 VTYTSVISGYCKLGKMDKATGIYNEMNSC-GIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLID- 410 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~- 410 (595)
..+......+...+.+..+...+...... ........+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 33444444444555555555544444331 112333334444444444455555555555554432221 111111112
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007626 411 GYCRNGQLNQGLKLCDEMKGKNL--SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45566666666666666543210 0122333333333556667777777777666543221355666667777777777
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007626 489 DEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
+.|...+...... .|+ ...+..+...+...+..+++...+.+....
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777665 232 334444444444666677777777777664
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=5.4 Score=34.63 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=25.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007626 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (595)
...|.+++.....+.+...+-+.....-..|.-+-.+.|++..|.++|..+...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 344555555555444443332222233334444445556666666666655543
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.11 E-value=9.8 Score=38.98 Aligned_cols=59 Identities=12% Similarity=-0.014 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 476 NPVIDGFCKAGNVDEANVIVAEMEEKRCK-PDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 476 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
..+..++.+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44555556667777777777776643211 123345566667777777777777766653
No 269
>PRK11906 transcriptional regulator; Provisional
Probab=93.03 E-value=4.2 Score=41.28 Aligned_cols=88 Identities=8% Similarity=-0.034 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIM 565 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (595)
.+..+|.++.++..+.+- -|......+..+..-.++++.|..+|++....+ +....+|......+.-.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346678888888888863 488888888888888889999999999999865 444566777777778899999999999
Q ss_pred HHHHhcCCCC
Q 007626 566 QRASEDQNLQ 575 (595)
Q Consensus 566 ~~~~~~~~~~ 575 (595)
+++.+-.+..
T Consensus 396 ~~alrLsP~~ 405 (458)
T PRK11906 396 DKSLQLEPRR 405 (458)
T ss_pred HHHhccCchh
Confidence 9988876644
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.82 E-value=7.8 Score=35.71 Aligned_cols=205 Identities=11% Similarity=0.103 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007626 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC 413 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 413 (595)
.|..-..+|....++++|...+.+..+. ...|...| -....++.|.-+.+++.+. .--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444555666666777766666555421 11111111 1122234444455555443 112234555556666
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCC--CCCHhhHHHHHHHHHHcCCH
Q 007626 414 RNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW---NDL--VPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~--~p~~~~~~~li~~~~~~g~~ 488 (595)
.+|..+-|-..+++.-+. ...-++++|++++++... .+- .--...|..+...+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666655555543221 112233334444333211 000 00112334444555566666
Q ss_pred HHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 007626 489 DEANVIVAEMEE----KRCKPDK-VTFTILIIGHCMKGRMVEAISIFNKMLRIG---CAPDDITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 489 ~~A~~l~~~m~~----~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~l~~~~~~~g~~~~ 560 (595)
++|-..+.+-.. ..--++. ..|-..|-.+....++..|.+.++.-.+.+ -+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 665444433211 1111122 234455555666677888888877754422 133456677777776 4577777
Q ss_pred HHHHH
Q 007626 561 AFRIM 565 (595)
Q Consensus 561 A~~~~ 565 (595)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 76654
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.81 E-value=6.7 Score=34.87 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=60.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 478 VIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFT-----ILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
+...+..++++++|..-++..... |....+. .|.......|.+|+|+.+++.....+ -.......-++.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHH
Confidence 345567778888888887776643 2222232 23445667888888888887665432 2334455567788
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 007626 553 LKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~~~ 573 (595)
...|+.++|+.-|+++++...
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHcCchHHHHHHHHHHHHccC
Confidence 888888888888888888763
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.63 E-value=6.4 Score=34.21 Aligned_cols=52 Identities=10% Similarity=-0.006 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007626 379 KVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
..|.++......+.+...+-+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444433333222222333344444445555555555554443
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.47 E-value=0.39 Score=31.23 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007626 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFF 197 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 197 (595)
+|..+...|.+.|++++|+++|+++.+.. |-|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 56666777777777777777777777754 4455444443
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.34 E-value=12 Score=36.49 Aligned_cols=130 Identities=14% Similarity=0.214 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhcCCC--CCCHhhHHHHHHHHHhcCC-
Q 007626 277 VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR--V----NEVARGHELLKEVKFKSEF--SPDVVTYTSVISGYCKLGK- 347 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~g~- 347 (595)
+++...+++.|.+.|+.-+..+|-+..-.... . .....|.++++.|++..++ .++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777776666543322222 1 1245667777777765532 2233344444433 2222
Q ss_pred ---hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007626 348 ---MDKATGIYNEMNSCGIKPSAV--TFNVLIDGFGKVGN--MVSAEYMRERMLSFGYLPDVVTFSSL 408 (595)
Q Consensus 348 ---~~~A~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 408 (595)
.+.+..+|+.+.+.|+..+.. ....++........ ...+..+++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 245556666666655544322 22222222211111 22445556666666665555554443
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=22 Score=38.85 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=44.5
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007626 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
.+-+.+.|++++|..-|-+-+..- .| ..++.-|....+..+-..+++.+.+.|.. +...-..|+++|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 344567888888877665544311 12 12344444444555555556666655543 334445566777776666
Q ss_pred hHHHHHHHH
Q 007626 243 DEAVYMFKE 251 (595)
Q Consensus 243 ~~A~~~~~~ 251 (595)
+.-.+..+.
T Consensus 448 ~kL~efI~~ 456 (933)
T KOG2114|consen 448 EKLTEFISK 456 (933)
T ss_pred HHHHHHHhc
Confidence 555444433
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.77 E-value=0.39 Score=29.66 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 544 TVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
+|..|...|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678888888888888888888844
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.68 E-value=22 Score=38.24 Aligned_cols=180 Identities=12% Similarity=0.003 Sum_probs=85.7
Q ss_pred hHHHHHHHHhccCCCCccCHHHHHHHHHH-----HHHcCCHhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhc
Q 007626 207 CDAAKGLLSQFRPGEVTMSTFMYNSLLNA-----LVKQNNADEAVYMFKEYFR-------LYSQPDTWTFNILIQGLSRI 274 (595)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~ 274 (595)
...|.+.++...+.| +......+..+ +....+.+.|+.+|+...+ .+ +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356777777776655 22222222222 2234577778777777765 33 222444555555553
Q ss_pred C-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH--hcC
Q 007626 275 G-----EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR-VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYC--KLG 346 (595)
Q Consensus 275 g-----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~g 346 (595)
. +.+.|+.++....+.| .|+....-..+..... ..+...|.++|...-..+ .++...+..++.... -..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCC
Confidence 2 4555777776666555 2333322222221111 234566777776666544 122221111111111 223
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007626 347 KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397 (595)
Q Consensus 347 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 397 (595)
+.+.|..++++..+.| .|....-...+..+.. ++++.+...+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 5666666666666665 2322222223333333 55555555555555544
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.67 E-value=5.3 Score=38.92 Aligned_cols=238 Identities=11% Similarity=0.029 Sum_probs=131.6
Q ss_pred CchhHHHHHHhcCCchHHHHHHHHhhhCCCCC---CCHHHHHHHHHHHHHcCCchHHHHHHHHH----HHCC-CCCCHHH
Q 007626 122 SPLNSLEVIKRLDNPKLGLKFLEFSRVNLSLN---HSFKTYNLVMRSLCEMGLHDSVQVVFDYM----RSDG-HLPNSPM 193 (595)
Q Consensus 122 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~~-~~~~~~~ 193 (595)
+|.+....++....++.+..+..|.+.-..+. --..+|-.+..+.++.|.+++++..--.- .+.. ...--..
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666777764311111 12346777788889999888876543222 1110 0111234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCC-CCcc---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-----CCCCHHHH
Q 007626 194 IEFFVSSCIRAGKCDAAKGLLSQFRPG-EVTM---STFMYNSLLNALVKQNNADEAVYMFKEYFRLY-----SQPDTWTF 264 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~ 264 (595)
|..+.+++-+.-++.+++.+-..-... |..+ .-...-++..+....+.++++++.|+...+.. .-.....|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 555666666666666666665543321 1111 12333446667777778899998888876532 11234467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCC
Q 007626 265 NILIQGLSRIGEVKKAFEFFYDMGS----FGCSPDIVTYN-----TLISGLCRVNEVARGHELLKEVKFK----SEFSPD 331 (595)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~-----~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~ 331 (595)
-.|-..|.+..|.++|.-+..+..+ .++.--..-|. .+.-++...|+...|.+.-++..+- +.-..-
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 7888888888888888776665532 22221111222 2233455667766666666554321 211122
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007626 332 VVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
......+.+.|...|+.+.|+.-|+...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3344556677778888888777776643
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.01 E-value=2.7 Score=40.04 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHHHHH
Q 007626 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS-----FGCSPDIVTYN 300 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 300 (595)
..++..++..+...|+++.+...++++....+ -+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34667788888888888888888888888765 5788888888999999988888888887753 67778777666
Q ss_pred HHHHH
Q 007626 301 TLISG 305 (595)
Q Consensus 301 ~li~~ 305 (595)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55544
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.93 E-value=21 Score=36.70 Aligned_cols=58 Identities=5% Similarity=0.098 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007626 302 LISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
+..++.+.|+.++|++.++++.+..+..........|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3334445555555555555555432111122344455555555555555555555543
No 281
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.82 E-value=21 Score=36.63 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=128.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007626 363 IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTI 442 (595)
Q Consensus 363 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 442 (595)
-+.|.....+++..++...++.-.+.+..+|...| -+...|..++.+|... ..+.-..+|+++.+..+ .|...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 35677788889999999999999999999999875 5678888999999888 67888899998888753 34444455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 007626 443 LINALCKENRLNDARRFLKQLKWNDLV-----PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK-RCKPDKVTFTILIIG 516 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~ 516 (595)
|...|.+ ++..++..+|..+..+=++ .-...|.-|.... ..+.|....+..++.+. |...-.+.+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 5555555 8888888888887654322 1123444444322 24677777777777643 444445566666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 517 HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
|....++++|++++....+.+ .-|..+-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 888889999999999888865 55666655666554
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.61 E-value=3 Score=39.65 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 007626 440 FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE-----KRCKPDKVTFTILI 514 (595)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~~li 514 (595)
+..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 333444444444444444444444444422 344444555555555555544444444432 34444444444333
No 283
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.86 E-value=15 Score=33.30 Aligned_cols=180 Identities=18% Similarity=0.153 Sum_probs=99.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007626 380 VGNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARR 458 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (595)
.|-+.-|..-|.+.... .|+ +..||.+.-.+...|+++.|.+.|+...+....-+-...|.-+ ++.-.|+++-|.+
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHH
Confidence 34444444444444443 343 4678888888888888888888888887775332322222222 3345688888877
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007626 459 FLKQLKWNDLVPKPFMYNPVIDGFCKAG-NVDEANV-IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~-l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
-+...-+.+.. |+ |.+|--.+...+ +..+|.. +.++.... |..-|...|..+.- |+..+ ..+++++...
T Consensus 155 d~~~fYQ~D~~-DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPN-DP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKISE-ETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCC-Ch--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhccH-HHHHHHHHhh
Confidence 77666655533 22 222222222222 5566644 33444433 55666555555432 22211 2233443331
Q ss_pred CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 537 GCAPD-------DITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 537 g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
-..+ ..||--|.+-+...|+.++|..+|+-++..+
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1111 2466777888888888888888888776543
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.79 E-value=0.44 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=19.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007626 530 FNKMLRIGCAPDDITVNSLISCLLKGGMPNEAF 562 (595)
Q Consensus 530 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 562 (595)
|++.++.. +-+...|..|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445443 455666777777777777777664
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.71 E-value=6.5 Score=34.90 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH---H
Q 007626 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPD--TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYN---T 301 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ 301 (595)
..+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+....--.+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566677777777777777777777766543322 3345666777777777777777666654321111111111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 007626 302 LIS--GLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 302 li~--~~~~~g~~~~A~~~~~~~~ 323 (595)
... .+...+++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234566777776666554
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.51 E-value=1.1 Score=26.86 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 544 TVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.+..+..++.+.|++++|++.++++++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455666667777777777777777665543
No 287
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.38 E-value=4.9 Score=35.76 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=55.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007626 446 ALCKENRLNDARRFLKQLKWNDLVPK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
-+.+.|++++|..-|...+..-+... ...|..-..++.+.+.++.|+.--.+.++.+.. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 46677888888888887776532211 234444555667777777777777776665321 1222223344666777
Q ss_pred CHHHHHHHHHHHHHC
Q 007626 522 RMVEAISIFNKMLRI 536 (595)
Q Consensus 522 ~~~~A~~~~~~m~~~ 536 (595)
++++|+.=|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 788888888777764
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.21 E-value=25 Score=35.02 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 267 LIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKF 324 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (595)
.+.+..+.|+++...+........ .++...+..+... +.++++++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356677788888855555544422 2344445544433 67788887777766543
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.21 E-value=5.5 Score=35.36 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHH
Q 007626 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK--VTFTILIIGHCMKGRMVEAISIFNKMLRIGCA---PDDITVNS 547 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ 547 (595)
..+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|......|++..+...+.++...--. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35667777777777777777777777766443332 23455666666777777777777666552111 12111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHh
Q 007626 548 LIS--CLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 548 l~~--~~~~~g~~~~A~~~~~~~~~ 570 (595)
... .+...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 23456777777777655543
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.95 E-value=1.1 Score=26.89 Aligned_cols=31 Identities=26% Similarity=0.136 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 543 ITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.+|..++.+|...|++++|+..++++++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4566677777777777777777777776543
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.58 E-value=1.1 Score=27.54 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 509 TFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+|..|...|.+.|++++|+.++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777788888888888888887543
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.32 E-value=17 Score=31.81 Aligned_cols=134 Identities=10% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007626 423 KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 423 ~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
+.++.+.+.+++|+...+..+++.+.+.|++.....+ ...++.+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4445555667777777777777777777776554433 33455555444443332222 2334444444444433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 503 CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 503 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
=...+..++..+...|++-+|+++.+...... .+ ....++.+-.+.++...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SV---PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cC---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11245666777778888888888776643211 11 223455666666666655555554444
No 293
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.14 E-value=34 Score=35.24 Aligned_cols=181 Identities=14% Similarity=0.107 Sum_probs=129.7
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007626 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSS 407 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 407 (595)
-..|....-+++..+.++.++.-...+-.+|..-| -+...|..++.+|... ..+.-..+|+++.+..+ .|++.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 34566778889999999999999999999999976 6788899999999888 66778899999988753 25555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHH
Q 007626 408 LIDGYCRNGQLNQGLKLCDEMKGKNLSP-----NVYTFTILINALCKENRLNDARRFLKQLKWN-DLVPKPFMYNPVIDG 481 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~~~~p-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~ 481 (595)
|...|.+ ++.+.+..+|.+....-++- -...|..+...- ..+.+....+...+.+. |..--...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 5555555 89999999999887653221 122444444321 35677777777777653 333345567777788
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007626 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIG 516 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 516 (595)
|....++++|++++..+.+.+-+ |.-.-..++.-
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 88899999999999999887533 44444444443
No 294
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.90 E-value=44 Score=35.16 Aligned_cols=400 Identities=12% Similarity=0.059 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHhccCC-CCc-cCHHHHHHHHH
Q 007626 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI-RAGKCDAAKGLLSQFRPG-EVT-MSTFMYNSLLN 234 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~li~ 234 (595)
-|......=.+.|..+.+.++|++-.. +++.+...|......+. ..|+.+.....|+..... |.. .+...|...|.
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 555566666778888999999998876 45666666666555444 557777888888887653 221 24456777888
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhc------CCHHHHHHHHHHHhh----------------
Q 007626 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQ---GLSRI------GEVKKAFEFFYDMGS---------------- 289 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~---~~~~~------g~~~~A~~~~~~m~~---------------- 289 (595)
.-..++++.....+|+++++. |. ..|+.... .+.+. ...+++.++-.....
T Consensus 160 ~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~ 235 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI 235 (577)
T ss_pred HHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence 888888999999999998863 21 12222221 22222 123333333222211
Q ss_pred ----CCCCCCHHH--HHHHHHH-------HHhcCCHHHHHHHHHHHHhcC--CC----CCCHhhHHHHHHHHHhcCChhH
Q 007626 290 ----FGCSPDIVT--YNTLISG-------LCRVNEVARGHELLKEVKFKS--EF----SPDVVTYTSVISGYCKLGKMDK 350 (595)
Q Consensus 290 ----~g~~p~~~t--~~~li~~-------~~~~g~~~~A~~~~~~~~~~~--~~----~p~~~~~~~ll~~~~~~g~~~~ 350 (595)
.+-+.+..+ .+.+-.. +-......+....|+.-.... .+ .++..+|...+..-.+.|+.+.
T Consensus 236 ~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 236 GVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred HHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 000000000 0111111 111111222222222222111 01 2345678888888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHh
Q 007626 351 ATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGY-CRNGQLNQGLKLCDEMK 429 (595)
Q Consensus 351 A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~ 429 (595)
+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+--++ +......+-..+ -..|+++.|..+++.+.
T Consensus 316 ~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 316 VFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 99999998641 1112233444444445559999998888776654332 222222222223 34679999999999998
Q ss_pred hCCCCCCH-HHHHHHHHHHHHcCCHHHHHH---HHHHHHhCCCCCCHhhHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Q 007626 430 GKNLSPNV-YTFTILINALCKENRLNDARR---FLKQLKWNDLVPKPFMYNPVIDGFC-----KAGNVDEANVIVAEMEE 500 (595)
Q Consensus 430 ~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~li~~~~-----~~g~~~~A~~l~~~m~~ 500 (595)
..- |+. ..-..-+....+.|..+.+.. ++..... | .-+....+.+.--+. -.++.+.|..++.++.+
T Consensus 394 ~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 394 SEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred hhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 774 433 333334455667888888873 3333332 2 123333333333332 34789999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHH-H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 501 KRCKPDKVTFTILIIGHCMKGRM---VEAISIFNKMLRIGCAPDDIT-V-NSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 501 ~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~-~-~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
. .+++...|..++.-+...+.. +--.-++..+......+|... + ...+.-..-.|....+.+-....+
T Consensus 470 ~-~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~~~~~~~~k~~ef~e~~g~~~~~~~~~~~~l 542 (577)
T KOG1258|consen 470 I-LPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFDDSRSSTDKYIEFLEWFGIDHKGAQDERPHL 542 (577)
T ss_pred c-CCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhccccccccchHHHHHHHHhccchhHhHhhchHHH
Confidence 6 566788888888877665532 223334444444333333322 2 223444444555555555443333
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.54 E-value=8.4 Score=36.84 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=83.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHH
Q 007626 337 SVISGYCKLGKMDKATGIYNEMNS----------CGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG---YLPDVV 403 (595)
Q Consensus 337 ~ll~~~~~~g~~~~A~~l~~~m~~----------~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~ 403 (595)
.|.++|.....|+.-....-.+-. .|.+....+...++..-....+++.++..+-++.... ..|+.
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~- 102 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW- 102 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-
Confidence 355566666566544333323222 3445556666666666666778888888777776531 11111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007626 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
+-.+.++.+ -.-+.++++.++..=+..|+.||.++++.+|+.+.+.+++.+|..+.-.|....
T Consensus 103 ~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 103 TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 112223322 334677888888888889999999999999999999999999888887776554
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.07 E-value=22 Score=30.75 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=23.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007626 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
+.++.+++..+++.+.--.+-.+...++..++ +...|++.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhc
Confidence 34455555555555544321122222222222 3455555555555555544
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.99 E-value=1.9 Score=27.21 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007626 542 DITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
..+++.|...|...|++++|..+++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 346777778888888888888888777653
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.52 E-value=22 Score=30.26 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007626 309 VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
.++.+++..+++.+.--.+-.+...++...+ +...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5666666666666654332223333343333 34566666666666666654
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.48 E-value=1.5 Score=25.91 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 545 VNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+-.++.++.+.|++++|.+.|+++++..+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34556677777788888888887777665
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.78 E-value=9.9 Score=36.40 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 007626 291 GCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSE--FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAV 368 (595)
Q Consensus 291 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 368 (595)
|......+...++..-....+++.++..+-.+..... ..|+... .+.+. ++..-++++++.++..=++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 4444555556666555556777777777766653211 1111111 11222 233346678888877778888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007626 369 TFNVLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 369 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
+++.+|+.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887776666543
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.24 E-value=43 Score=32.60 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=71.2
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCC-
Q 007626 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR--IG----EVKKAFEFFYDMGSFGC---SPDIVTYNTLISGLCRVNE- 311 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~- 311 (595)
+++.+.+++.|.+.|...+..+|-+..-.... .. ....|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 33455677777777766666555443332222 22 24567778888875431 2344555555443 2222
Q ss_pred ---HHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007626 312 ---VARGHELLKEVKFKSEFSPDV-VTYTSVISGYCKLGK--MDKATGIYNEMNSCGIKPSAVTFNVLI 374 (595)
Q Consensus 312 ---~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~~~~~ll 374 (595)
.+.++.+++.+...+-.+.|. .....++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345566666666533222333 233333332222222 457888999999999888877776554
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.16 E-value=40 Score=32.22 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-cC-ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007626 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCK-LG-KMDKATGIYNEMNS-CGIKPSAVTFNVLIDGFGKVGNMVSAEY 388 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~g-~~~~A~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 388 (595)
+.+|+++|+....++.+--|......+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 345555555322212233444444445444433 11 12222222233322 2235666666677777777777777777
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007626 389 MRERMLSF-GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 389 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
+++..... +...|...|..+|......|+..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77666554 4445666777777777777776655555543
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.07 E-value=1.4 Score=26.80 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 007626 190 NSPMIEFFVSSCIRAGKCDAA 210 (595)
Q Consensus 190 ~~~~~~~li~~~~~~g~~~~A 210 (595)
+...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 333344444444444443333
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.85 E-value=11 Score=39.39 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=86.9
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007626 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
.|+++.|..++..+. ...-+.+++-+.+.|..++|+++- +|..- -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 456666655444432 233445666667777777766542 22211 12233456777777776
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007626 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY 398 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 398 (595)
..+.. +..-|..|..+..+.|++..|.+.|....+ |..|+-.+...|+-+....+-....+.|.
T Consensus 660 a~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 660 AVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 65542 456677888888888888888877776654 33555566666776655555555555542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007626 399 LPDVVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
.+ .-.-+|...|+++++++++..-
T Consensus 724 -~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 -NN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -cc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 22 2223455677777777776543
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.67 E-value=29 Score=30.30 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=46.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007626 389 MRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL 468 (595)
Q Consensus 389 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (595)
.++.+.+.+++|+...|..+++.+.+.|++.... .+...++-+|.......+-.+. +....+.++--+|.++-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh-
Confidence 3444445556666666666666666666544332 3333444444443333332221 22233333333332210
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007626 469 VPKPFMYNPVIDGFCKAGNVDEANVIVAEM 498 (595)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 498 (595)
...+..+++.+...|++-+|.++.+..
T Consensus 89 ---~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 ---GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 013455556666666666666666554
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.55 E-value=18 Score=32.51 Aligned_cols=75 Identities=16% Similarity=0.013 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007626 487 NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI---GCAPDDITVNSLISCLLKGGMPNEAF 562 (595)
Q Consensus 487 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 562 (595)
.-++|.+.|-++...+.--++...-.+. .|....+.++++.++.+..+. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3466777777777665554544444444 444467888888888887762 33677888888888888888888775
No 307
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.39 E-value=75 Score=34.81 Aligned_cols=97 Identities=9% Similarity=-0.023 Sum_probs=52.8
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 007626 141 KFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 220 (595)
.+..|....++.+.....=..-+..+.+.+++.+.+.++.. .+.+...-.....+....|+.++|....+.+-..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 44444544444444433444444555666666665553211 1445555566677777777776666666655433
Q ss_pred CCccCHHHHHHHHHHHHHcCCHh
Q 007626 221 EVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
| ...+..++.++..+.+.|.+.
T Consensus 159 g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 159 G-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred C-CCCChHHHHHHHHHHHcCCCC
Confidence 3 234456666777666666443
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.28 E-value=41 Score=31.62 Aligned_cols=204 Identities=14% Similarity=0.152 Sum_probs=122.8
Q ss_pred CCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CC
Q 007626 290 FGCSPDIVTYNTLISGL-CRVNEVARGHELLKEVKFKSEFSPD--VVTYTSVISGYCKLGKMDKATGIYNEMNSC---GI 363 (595)
Q Consensus 290 ~g~~p~~~t~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---g~ 363 (595)
.+-.||+..-|..-.+- .+..+.++|+.-|.++..-.+-+.+ -.+...++....+.|++++..+.|.+|... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34566665544322211 2345789999999988765432222 234567788899999999999999988541 11
Q ss_pred C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC---
Q 007626 364 K--PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF-----GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL--- 433 (595)
Q Consensus 364 ~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--- 433 (595)
. -+..+.+.++.-.+...+.+....+++.-.+. +-..--.|-..|...|...+.+.+..++++++...-.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1 34556777887777777777666666543321 0011112335667777788888888888888765411
Q ss_pred -CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHH-----HHHcCCHHHHHHH
Q 007626 434 -SPN-------VYTFTILINALCKENRLNDARRFLKQLKWN-DLVPKPFMYNPVIDG-----FCKAGNVDEANVI 494 (595)
Q Consensus 434 -~p~-------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~-----~~~~g~~~~A~~l 494 (595)
..| ...|..-+..|...++-.+...++++.... ...|.+..... |+- ..+.|++++|..-
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhH
Confidence 112 245666677777777777777777765432 23455544433 332 3456777777443
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.27 E-value=29 Score=29.96 Aligned_cols=52 Identities=21% Similarity=0.093 Sum_probs=27.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007626 449 KENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+.++.+++..++..+.-..+. .+..-..-...+...|++++|.++|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 455666666666666544322 1222222233345666777777777776554
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.22 E-value=12 Score=29.00 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007626 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
++.+-+..+...++.|++.+..+.+++|.+..++.-|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444445555555555555555555555555555555555544
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.07 E-value=27 Score=36.68 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007626 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC 413 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 413 (595)
..+.++..+.+.|..++|+++- +|.... .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3445555566666666665532 222111 122345666776666655432 4556777777777
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 007626 414 RNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (595)
..+++..|.+.|....+. ..|+-.+...|+-+....+-....+.|. .|...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 777777777766655432 3344455555665554444444444442 2333344555666666666
Q ss_pred HHHHH
Q 007626 494 IVAEM 498 (595)
Q Consensus 494 l~~~m 498 (595)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 65443
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.91 E-value=3.8 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 508 VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+++.+...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887765
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.66 E-value=4.8 Score=24.03 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007626 228 MYNSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
+|..+...+...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555566666666666666666665553
No 314
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.41 E-value=13 Score=37.79 Aligned_cols=132 Identities=8% Similarity=0.028 Sum_probs=81.1
Q ss_pred HHHHHHcCCHHHHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 007626 409 IDGYCRNGQLNQGLKLCDE-MKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN 487 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~-m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (595)
|.-....|+.-.|-+-+.. +.....-|+....... .+...|+++.+...+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3334456777666554444 4333333444333333 345678888888877665432 12344577788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007626 488 VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITV 545 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 545 (595)
+++|..+-+.|....+. +...........-..|-+|++...|++..... +|...-|
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~ 428 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGW 428 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC-Chhcccc
Confidence 88888888888766554 44544444444455677888888888877655 3433333
No 315
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.38 E-value=42 Score=30.53 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 007626 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYS 257 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (595)
+.+||-|.--+...|+++.|.+.|+...+.++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 44556666666666666666666666655443
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.31 E-value=4.2 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.044 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 543 ITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.+|..+...|...|++++|.+.|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567778888888888888888888876543
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.52 E-value=9 Score=30.02 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007626 456 ARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 456 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
..+-+..+...++.|++.+..+.+++|.+..++.-|.++|+-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555554443
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.50 E-value=64 Score=32.06 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007626 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP---DVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
.+|..++..+.+.|.++.|...+..+...+... ++...-.-+..+...|+.++|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554422111 222333334444455555555555555444
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.47 E-value=19 Score=32.41 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHHcCCHHHH
Q 007626 420 QGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN---DLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
.|...|-.+...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444433333333333333332 33444444444443322 1123444444444444444444443
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.18 E-value=5.1 Score=38.65 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=61.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007626 445 NALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 524 (595)
+-|.+.|.+++|+..|........ -++.++..-..+|.+.+.+..|..--...+..+- .-...|..-..+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 458899999999999988775542 2788888888999999998877766655554310 01123333333334455666
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 007626 525 EAISIFNKMLRIGCAPDD 542 (595)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~ 542 (595)
+|.+-++..++. .|+.
T Consensus 183 EAKkD~E~vL~L--EP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPKN 198 (536)
T ss_pred HHHHhHHHHHhh--Cccc
Confidence 666666666653 5653
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.16 E-value=4.4 Score=39.09 Aligned_cols=91 Identities=10% Similarity=-0.064 Sum_probs=62.0
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007626 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
.+-|.++|.+++|++.|....... +.++.++..-..+|.+.+++..|..-....+..+ ..-+..|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 356889999999999999877754 4488889889999999999887777666655432 11122333333333445666
Q ss_pred hHHHHHHHHHHHc
Q 007626 243 DEAVYMFKEYFRL 255 (595)
Q Consensus 243 ~~A~~~~~~m~~~ 255 (595)
.+|.+-++..++.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 6777767666664
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.10 E-value=4.7 Score=23.91 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 512 ILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+...+...|++++|++.|++.++
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.55 E-value=1.1e+02 Score=34.12 Aligned_cols=226 Identities=14% Similarity=0.161 Sum_probs=124.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 007626 343 CKLGKMDKATGIYNEMNSCGIKPSA-------VTFNVLID-GFGKVGNMVSAEYMRERMLSF----GYLPDVVTFSSLID 410 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~-------~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 410 (595)
....++.+|..+..++...=-.|+. ..++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4568899999988887653212222 12333322 234568889998888877653 22345566777778
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHH---HHHH--HHHHHcCCHH--HHHHHHHHHHhC---CCC---CCHhhHHH
Q 007626 411 GYCRNGQLNQGLKLCDEMKGKNLSPNVYTF---TILI--NALCKENRLN--DARRFLKQLKWN---DLV---PKPFMYNP 477 (595)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~---~~ll--~~~~~~g~~~--~A~~~~~~~~~~---~~~---p~~~~~~~ 477 (595)
+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +.+..+...... ... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999888776544222233322 2222 2344566332 223333333221 101 12234555
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 007626 478 VIDGFCKAG-NVDEANVIVAEMEEKRCKPDKVTF--TILIIGHCMKGRMVEAISIFNKMLRIG----CAPDDITVNSLIS 550 (595)
Q Consensus 478 li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~ 550 (595)
+..++.+.. ...++..-+.--......|-...+ ..|.......|+.++|...++++.... ..++..+...++.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 555555521 222233223222222222222222 366777788999999999999988732 2334444444444
Q ss_pred HH--HhcCCHHHHHHHHHHH
Q 007626 551 CL--LKGGMPNEAFRIMQRA 568 (595)
Q Consensus 551 ~~--~~~g~~~~A~~~~~~~ 568 (595)
.. ...|+..+|.....+-
T Consensus 666 ~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 666 LILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhcccCCHHHHHHHHHhc
Confidence 33 4678888888877663
No 324
>PRK09687 putative lyase; Provisional
Probab=78.43 E-value=66 Score=31.01 Aligned_cols=18 Identities=11% Similarity=-0.090 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 007626 365 PSAVTFNVLIDGFGKVGN 382 (595)
Q Consensus 365 p~~~~~~~ll~~~~~~g~ 382 (595)
++...-...+.++.+.|+
T Consensus 204 ~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD 221 (280)
T ss_pred CChHHHHHHHHHHHccCC
Confidence 344444444455555544
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.88 E-value=8.1 Score=29.94 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 488 VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
.=++.+-+..+....+.|++....+.+.+|.+.+++..|+++|+-..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33566666666666777777777777777777777777777777654
No 326
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.31 E-value=69 Score=30.63 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 510 FTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++.....|..+|.+.+|.++.++.+... +.+...+-.|+..+...|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4445567888999999999999888865 66777788888889999987777777766553
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.14 E-value=1.2e+02 Score=33.20 Aligned_cols=413 Identities=14% Similarity=0.117 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHH-HcCCchHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHhccCC----CCccC
Q 007626 156 FKTYNLVMRSLC-EMGLHDSVQVVFDYMRSDGHLPNSP-----MIEFFVSSCIRAGKCDAAKGLLSQFRPG----EVTMS 225 (595)
Q Consensus 156 ~~~y~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 225 (595)
..++-.+...|. ...++++|...+++....--.++.. +-..+++.+.+.+... |...+++.++. +..+-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345555666665 6677888888777665432122221 1223445555555444 77776665432 11122
Q ss_pred HHHHHHH-HHHHHHcCCHhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhCC--------
Q 007626 226 TFMYNSL-LNALVKQNNADEAVYMFKEYFRLY---SQPDTWTFNILIQGLS--RIGEVKKAFEFFYDMGSFG-------- 291 (595)
Q Consensus 226 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g-------- 291 (595)
...+..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.++++....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2233333 223323367777877777765532 2233334444444433 3344556666666553211
Q ss_pred -CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH-------hcC---C------CC-------------CCHh------
Q 007626 292 -CSPDIVTYNTLISGLC--RVNEVARGHELLKEVK-------FKS---E------FS-------------PDVV------ 333 (595)
Q Consensus 292 -~~p~~~t~~~li~~~~--~~g~~~~A~~~~~~~~-------~~~---~------~~-------------p~~~------ 333 (595)
..|-..+|..+++.++ ..|+++.+...++++. ... . ++ +...
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 1234555666665544 4566555555544432 110 0 00 1111
Q ss_pred ---hHHHHHHH--HHhcCChhHHHHHHHH-------HH-HCCCCCCH--------HHHHHHH---------HHHHhcCCH
Q 007626 334 ---TYTSVISG--YCKLGKMDKATGIYNE-------MN-SCGIKPSA--------VTFNVLI---------DGFGKVGNM 383 (595)
Q Consensus 334 ---~~~~ll~~--~~~~g~~~~A~~l~~~-------m~-~~g~~p~~--------~~~~~ll---------~~~~~~g~~ 383 (595)
....++.+ .+..+..+.|.+++++ .. .....+.. ..|...+ -..+-.+++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 11122222 2334444455555544 33 11111111 1111111 122556889
Q ss_pred HHHHHHHHHHHhCCC-CCC-----HHHHHHHH--HHHHHcCCHHHHHHHHH--------HHhhCCCCCCHHHHHHHHH--
Q 007626 384 VSAEYMRERMLSFGY-LPD-----VVTFSSLI--DGYCRNGQLNQGLKLCD--------EMKGKNLSPNVYTFTILIN-- 445 (595)
Q Consensus 384 ~~A~~~~~~m~~~g~-~p~-----~~~~~~li--~~~~~~g~~~~A~~l~~--------~m~~~~~~p~~~~~~~ll~-- 445 (595)
..|...++.+.+..- .|+ ...+..++ -.+...|+.+.|...|. .....+...+..++..+=.
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 999999988875321 111 12222333 33456799999999997 4445554444444433211
Q ss_pred HHHH--cCCHHH--HHHHHHHHHhC-CCCCC--Hhh-HHHHHHHHHHcC--CHHHHHHHHHHHHHC---CCCCC---HHH
Q 007626 446 ALCK--ENRLND--ARRFLKQLKWN-DLVPK--PFM-YNPVIDGFCKAG--NVDEANVIVAEMEEK---RCKPD---KVT 509 (595)
Q Consensus 446 ~~~~--~g~~~~--A~~~~~~~~~~-~~~p~--~~~-~~~li~~~~~~g--~~~~A~~l~~~m~~~---g~~p~---~~~ 509 (595)
.+.. .....+ +.++++.+... .-.|+ ..+ +..++.++.... ...++...+.+..+. ....+ ..+
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 1222 222233 66677665432 11222 222 333344443222 223444444332221 11111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C--CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 510 FTILIIGHCMKGRMVEAISIFNKMLRIGCA-P--DDITV-----NSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p--~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++.|...+. .|+..|..+.........-+ | ....| ..+.+.+...|+.++|.....+...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333333333 78888876666554431111 2 33444 2344557889999999998877653
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.11 E-value=1.2e+02 Score=33.25 Aligned_cols=102 Identities=7% Similarity=0.087 Sum_probs=56.3
Q ss_pred HHHHHhcCChHHHHHHHHhccCCCCcc---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007626 198 VSSCIRAGKCDAAKGLLSQFRPGEVTM---STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRI 274 (595)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 274 (595)
++-+.+.+.+++|+++.+..... .+ -......+|+.+...|++++|-...-.|.. -+..-|.-.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 34455666777777776665432 22 234556677777777777777777766653 3555566666666666
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007626 275 GEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR 308 (595)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 308 (595)
++......++ ....-..+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5544433222 111112244556655555554
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.02 E-value=30 Score=27.09 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007626 277 VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
.++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+ +.||...|..|-. .+.|..+.+..-+.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45555555555443211 1222222234456667777776665544 3566666666544 35566666666666
Q ss_pred HHHHCCCCCCHHHH
Q 007626 357 EMNSCGIKPSAVTF 370 (595)
Q Consensus 357 ~m~~~g~~p~~~~~ 370 (595)
.|..+| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 666555 3433333
No 330
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.68 E-value=1.3e+02 Score=33.00 Aligned_cols=118 Identities=13% Similarity=0.020 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 450 ENRLNDARRFLKQLKWND-LVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 526 (595)
..+.+.|..++....... ..+. ..++..+.......+...+|...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777654332 2111 1233444333333322455555555543321 2333334444444567777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 527 ISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 527 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
...+..|-... .-...-.--+..++...|+.++|..+|+++..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777765422 22333333456666667888888777777644
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.15 E-value=4.1 Score=22.83 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 007626 545 VNSLISCLLKGGMPNEAFRIMQ 566 (595)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~ 566 (595)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455566666666666666654
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.10 E-value=6.2 Score=25.67 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 547 SLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
.|..+|...|+.+.|++++++.++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888877544
No 333
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=74.71 E-value=83 Score=30.27 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 313 ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRER 392 (595)
Q Consensus 313 ~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 392 (595)
.-|.++|+...... ..+.+++++.+.+.-+.-+++| +|+..+-......+...|--+-....-.+
T Consensus 184 ~F~~~lFk~~~~Ek-------~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q 248 (412)
T KOG2297|consen 184 SFAVKLFKEWLVEK-------DINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQ 248 (412)
T ss_pred HHHHHHHHHHHhhc-------cHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHH
Confidence 34566666665322 3455666655544444433333 66666665555555555433322221111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007626 393 MLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCD-EMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPK 471 (595)
Q Consensus 393 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 471 (595)
+... .-...-..|..-..+...+++.....+ +|.+.+ -|+..+...+-++......|.+-.++..+-.- -.
T Consensus 249 ~~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qal----rh 320 (412)
T KOG2297|consen 249 QSEG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQAL----RH 320 (412)
T ss_pred HHHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHH----HH
Confidence 1100 001112223333334445555555444 455555 44544333222333333333332222211110 12
Q ss_pred HhhHHHHHHHHHHcCCHHHHH
Q 007626 472 PFMYNPVIDGFCKAGNVDEAN 492 (595)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~ 492 (595)
...|..|+.++|..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 336888888888888876553
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.71 E-value=40 Score=26.57 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHH
Q 007626 279 KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVI 339 (595)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll 339 (595)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.+-+ +....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHH
Confidence 4455555666666677777777777777777777777777777766542 2222555554
No 335
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.49 E-value=19 Score=32.22 Aligned_cols=92 Identities=14% Similarity=0.004 Sum_probs=56.5
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007626 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPN-----SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
.+-+.+.|++++|..-|...++.= ++. ...|..-..++.+.+.++.|+.-..+.++.+.. ...+.-.-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 345677888888888888877742 221 233555556677777777777777777665421 1222222344566
Q ss_pred HcCCHhHHHHHHHHHHHcC
Q 007626 238 KQNNADEAVYMFKEYFRLY 256 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~ 256 (595)
+...+++|+.-|+++.+..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 6667777777777776654
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.30 E-value=1.4e+02 Score=32.64 Aligned_cols=60 Identities=12% Similarity=-0.046 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHhccCC
Q 007626 160 NLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK-------CDAAKGLLSQFRPG 220 (595)
Q Consensus 160 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~ 220 (595)
-.+|-.+.++|.+++|.++....... .......|...+..|....+ -+....-|++..+.
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 35666777888888888888544432 23444566777777765422 23445556655544
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.70 E-value=24 Score=32.08 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHH
Q 007626 229 YNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF--GCSPDIVTYNTLISG 305 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~ 305 (595)
.+..++.+.+.++..+|+...++-++..+ .|...-..++..||-.|++++|..-++-.-.. ...+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456667777778888877777666554 46666777778888888888877666554322 223445566666654
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.61 E-value=1.7e+02 Score=32.78 Aligned_cols=227 Identities=14% Similarity=0.053 Sum_probs=121.0
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHHHhhC----CCCCCHHHHHHH
Q 007626 235 ALVKQNNADEAVYMFKEYFRLYSQPDTW-------TFNILIQ-GLSRIGEVKKAFEFFYDMGSF----GCSPDIVTYNTL 302 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l 302 (595)
......++++|..+..+....-..|+.. .|+.|-. .....|++++|.++.+...+. -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445688999999888876654333322 3444432 334568889998888776542 233456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH-----HHHHHhcCC--hhHHHHHHHHHHHC---CCC---CCHHH
Q 007626 303 ISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV-----ISGYCKLGK--MDKATGIYNEMNSC---GIK---PSAVT 369 (595)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l-----l~~~~~~g~--~~~A~~l~~~m~~~---g~~---p~~~~ 369 (595)
..+..-.|++++|..+..+..+.. -.-++..+..+ ...+...|. +.+....|...... ..+ +-..+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a-~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMA-RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 777888899999998887765432 11233332222 233455663 33333334333221 001 12334
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC----CHHHHHH
Q 007626 370 FNVLIDGFGKV-GNMVSAEYMRERMLSFGYLPDVV--TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP----NVYTFTI 442 (595)
Q Consensus 370 ~~~ll~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p----~~~~~~~ 442 (595)
+..++.++.+. +...++..-++--......|-.. .+..|+..+...|+.++|...++++......+ +..+-..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 45555555551 11222222222222222112112 22367788889999999999998886553333 2222222
Q ss_pred HHHH--HHHcCCHHHHHHHHHH
Q 007626 443 LINA--LCKENRLNDARRFLKQ 462 (595)
Q Consensus 443 ll~~--~~~~g~~~~A~~~~~~ 462 (595)
.+.. ....|+.+++...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 2346777777666555
No 339
>PRK09687 putative lyase; Provisional
Probab=71.77 E-value=99 Score=29.83 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007626 513 LIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+.++...|.. +|...+.++.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 33444444442 34444444443
No 340
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.57 E-value=58 Score=30.93 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 007626 407 SLIDGYCRNGQLNQGLKLCDEMKGK--NLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK 484 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 484 (595)
.=|.+++..+++.+++...-+--+. .+||.+ .-.-|-.|.|.+.+..+.++-..-...--.-+..-|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3477888888888888766554333 344444 344444578888888888777766543222223347776666654
Q ss_pred -----cCCHHHHHHHH
Q 007626 485 -----AGNVDEANVIV 495 (595)
Q Consensus 485 -----~g~~~~A~~l~ 495 (595)
.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58888888876
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.47 E-value=1.8e+02 Score=32.83 Aligned_cols=116 Identities=13% Similarity=0.122 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCC--------
Q 007626 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGI---KPSAVTFNVLIDGFGKVGNM--VSAEYMRERMLSFGYLP-------- 400 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~--~~A~~~~~~m~~~g~~p-------- 400 (595)
-|..|+..|...|+.++|+++|.+..+..- .--...+-.++.-+.+.+.. +-.++.-....+.....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 467777777777777777777777765210 00011122233333333332 33333332222221000
Q ss_pred CH---HHH-HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 007626 401 DV---VTF-SSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK 449 (595)
Q Consensus 401 ~~---~~~-~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~ 449 (595)
|. .+. ..-+-.|+.....+-+...++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 00 000 01223455666777788888888776656677777777777654
No 342
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.82 E-value=2.9e+02 Score=34.81 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 472 PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+|-...+...+.|+++.|...+-...+.+ . +..+--........|+...|+.++++-++
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4456666666666777777766666655554 2 23334445555667777777777777664
No 343
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.40 E-value=3.5 Score=35.03 Aligned_cols=26 Identities=4% Similarity=0.011 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHH
Q 007626 155 SFKTYNLVMRSLCEMGLHDSVQVVFD 180 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~ 180 (595)
+...++.++..|++.+..+...++++
T Consensus 41 ~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 41 NPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555444444444443
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=69.48 E-value=14 Score=21.76 Aligned_cols=27 Identities=26% Similarity=0.161 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 509 TFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777777665
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.94 E-value=73 Score=27.18 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=29.5
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 007626 168 EMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE 221 (595)
Q Consensus 168 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 221 (595)
..++++++..+++.|.-.. |-....-..-...+...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3666777777777666542 1122222222333556677777777777776543
No 346
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.81 E-value=11 Score=21.05 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007626 545 VNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
+..+..++...|++++|...++..++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 445555566666666666666655543
No 347
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.77 E-value=61 Score=29.80 Aligned_cols=67 Identities=13% Similarity=-0.037 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCC----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007626 510 FTILIIGHCMKGRMV-------EAISIFNKMLRIGCA----PD-DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 510 ~~~li~~~~~~g~~~-------~A~~~~~~m~~~g~~----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
+--+.+.|-..|+.+ .|.+.|++..+..-. .+ ....-.++....+.|+.++|.++|.+++.....+.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 444455555555533 344555554442211 11 23333455666788888888888888887766554
No 348
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.73 E-value=1.2 Score=37.87 Aligned_cols=53 Identities=8% Similarity=0.130 Sum_probs=21.6
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007626 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLS 215 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 215 (595)
|..+.+.+.+......++.+...+...+....+.++..|++.+..+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444444444444444443323334444444444444444344333333
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.67 E-value=1.1e+02 Score=29.28 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007626 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR-----IGCAPDDITV 545 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 545 (595)
+++.....|..+|.+.+|.++.++.+... +.+...+-.++..+...|+--+|.+-++++.+ .|+..|..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455566667777777777776666552 33555566666667777776666666655543 4555555443
No 350
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.24 E-value=11 Score=21.97 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=14.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHc
Q 007626 232 LLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
+..++.+.|+.++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555666666666666666554
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.20 E-value=91 Score=27.99 Aligned_cols=91 Identities=18% Similarity=0.064 Sum_probs=49.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007626 445 NALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR 522 (595)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 522 (595)
..+...+++++|..-++........-+ ..+--.|.+.....|.+|+|+.+++...+.+. .......-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 345566667777666665543211100 11222344555666777777777766654432 22223344456667777
Q ss_pred HHHHHHHHHHHHHCC
Q 007626 523 MVEAISIFNKMLRIG 537 (595)
Q Consensus 523 ~~~A~~~~~~m~~~g 537 (595)
-++|..-|++.+..+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777776654
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.09 E-value=1.9e+02 Score=31.62 Aligned_cols=402 Identities=16% Similarity=0.163 Sum_probs=197.5
Q ss_pred hcCCchHHHHHHHHhhh--C-CCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHH
Q 007626 132 RLDNPKLGLKFLEFSRV--N-LSLNH-SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSD----GHLPNSPMIEFF-VSSCI 202 (595)
Q Consensus 132 ~~~~~~~a~~~~~~~~~--~-~~~~~-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~l-i~~~~ 202 (595)
...+.+.|.....-... + .++.. -..+...+++.+.+.+... |...+++.++. +..+-...|..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33677778777764432 1 11111 1223456677787777666 99988887762 223333444444 33333
Q ss_pred hcCChHHHHHHHHhccCC---CCccCHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHcCC---------CCCHHHHHHHH
Q 007626 203 RAGKCDAAKGLLSQFRPG---EVTMSTFMYNSLLNALVK--QNNADEAVYMFKEYFRLYS---------QPDTWTFNILI 268 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~---------~~~~~~~~~li 268 (595)
..++...|.+.++.+... ...+...++-.++.+... .+..+++.+.++++..... .|-..+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 447999999998887542 124455555666665554 3556777777776633221 23455666666
Q ss_pred HHH--HhcCCHHHHHHHHHHHhh-------CC----------CC-------------CCHHHH---------HHHHHH--
Q 007626 269 QGL--SRIGEVKKAFEFFYDMGS-------FG----------CS-------------PDIVTY---------NTLISG-- 305 (595)
Q Consensus 269 ~~~--~~~g~~~~A~~~~~~m~~-------~g----------~~-------------p~~~t~---------~~li~~-- 305 (595)
+.+ ...|+++.+.+.++++.+ .. ++ +....| .-++.+
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~ 310 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH 310 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence 654 456776666666555421 10 00 111111 112222
Q ss_pred HHhcCCHHHHHHH-------HHHHHhcCCCCCCH--------hhHHHHHH---------HHHhcCChhHHHHHHHHHHHC
Q 007626 306 LCRVNEVARGHEL-------LKEVKFKSEFSPDV--------VTYTSVIS---------GYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 306 ~~~~g~~~~A~~~-------~~~~~~~~~~~p~~--------~~~~~ll~---------~~~~~g~~~~A~~l~~~m~~~ 361 (595)
.+..+..++|.+. .+.........+.. ..|...+. ..+-.+++..|...++.|.+.
T Consensus 311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2233444345444 44444111111111 12222222 224568899999999998763
Q ss_pred CC-CC-----CHHHHHHHHHH--HHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHH--HHHHH--HcCCHHH-
Q 007626 362 GI-KP-----SAVTFNVLIDG--FGKVGNMVSAEYMRE--------RMLSFGYLPDVVTFSSL--IDGYC--RNGQLNQ- 420 (595)
Q Consensus 362 g~-~p-----~~~~~~~ll~~--~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~l--i~~~~--~~g~~~~- 420 (595)
.- .| ....+...+.+ +-..|+++.|...|. .....+...+...+..+ +-.+. .....++
T Consensus 391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 21 11 12223333332 345699999999997 44444444444433322 11222 2222333
Q ss_pred -HHHHHHHHhhC-CCCCC--HHH-HHHHHHHHHHcCC--HHHHHHHHHHHH-----hCCCC-CCHhhHHHHHHHHHHcCC
Q 007626 421 -GLKLCDEMKGK-NLSPN--VYT-FTILINALCKENR--LNDARRFLKQLK-----WNDLV-PKPFMYNPVIDGFCKAGN 487 (595)
Q Consensus 421 -A~~l~~~m~~~-~~~p~--~~~-~~~ll~~~~~~g~--~~~A~~~~~~~~-----~~~~~-p~~~~~~~li~~~~~~g~ 487 (595)
+..+++.+... .-.|+ ..+ +..++.++..... ..++...+.+.. ..+.. .-..+++.+...+. .|+
T Consensus 471 ~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~ 549 (608)
T PF10345_consen 471 ELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGD 549 (608)
T ss_pred HHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC
Confidence 67777766543 11222 223 3333333322211 224444333321 11111 11223444444444 677
Q ss_pred HHHHHHHHHHHHHCCCC-C--CHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHH
Q 007626 488 VDEANVIVAEMEEKRCK-P--DKVTFTILI-----IGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~-p--~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+..+..........+ | ....|..+. ..+...|+.++|.....+...
T Consensus 550 ~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 550 VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 77766555543321111 2 334453333 346678999999998877654
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.71 E-value=16 Score=27.22 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 519 MKGRMVEAISIFNKMLRIGCAPD--DITVNSLISCLLKGGMPNEAFRIM 565 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 565 (595)
...+.++|+..|+..++.-..+. -.++..|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766332222 134566677777777777766653
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.19 E-value=13 Score=24.16 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=9.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 007626 479 IDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~ 499 (595)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.08 E-value=32 Score=31.31 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCC--CccCHHHHHHHHHH
Q 007626 160 NLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE--VTMSTFMYNSLLNA 235 (595)
Q Consensus 160 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~ 235 (595)
+..+..+.+.+++.+|+...+.-.+.. +.|...-..++..++-.|++++|..-++..-+.. ..+....|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445566677777777777777666654 5566666677777777777777766665554332 23334455555543
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.36 E-value=31 Score=31.02 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 539 APDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 539 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.|++.+|..++.++...|+.++|.++.+++..-++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555555555555555554443
No 357
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.93 E-value=1.3e+02 Score=28.98 Aligned_cols=77 Identities=16% Similarity=0.050 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------
Q 007626 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGG--------- 556 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--------- 556 (595)
.|...+.++...+ +......+...|.. ..+..+|..+|++..+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5666666665554 33333333333322 3366667777776666653 22222222 333333
Q ss_pred ------CHHHHHHHHHHHHhcCC
Q 007626 557 ------MPNEAFRIMQRASEDQN 573 (595)
Q Consensus 557 ------~~~~A~~~~~~~~~~~~ 573 (595)
+...|..++......+.
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC
Confidence 66677777776666554
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.59 E-value=1.3e+02 Score=28.77 Aligned_cols=200 Identities=10% Similarity=0.123 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCChHHHHHHHHhcc----CCCCccCHHHH
Q 007626 161 LVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPM-------IEFFVSSCIRAGKCDAAKGLLSQFR----PGEVTMSTFMY 229 (595)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~ 229 (595)
-+.+-..+.+++++|+..|.++...|+..+..+ ...+...|...|+...--+...... ...-+....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 356677889999999999999999988776655 4457777888888765544443322 22223344455
Q ss_pred HHHHHHHHHc-CCHhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHH----hhCCCCCCHHHH
Q 007626 230 NSLLNALVKQ-NNADEAVYMFKEYFRLYSQPDT-----WTFNILIQGLSRIGEVKKAFEFFYDM----GSFGCSPDIVTY 299 (595)
Q Consensus 230 ~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~ 299 (595)
.+|+..+... ..++.-+.+....++.....+. ..-.-++..+.+.|.+.+|+.+...+ .+..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5666555433 3455556655555443221111 11234677788888888887765443 333344544433
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHh---cCCCCCCHhhHHHHHHHH--HhcCChhHHHHHHHHHHH
Q 007626 300 NTL-ISGLCRVNEVARGHELLKEVKF---KSEFSPDVVTYTSVISGY--CKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 300 ~~l-i~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~~~~~~ll~~~--~~~g~~~~A~~l~~~m~~ 360 (595)
..+ -..|.+..++.++..-+..... .--++|....---|+++. |...++.-|..+|-+..+
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 222 2334444444444433333221 111444444333344432 444556666666666554
No 359
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.53 E-value=1.2e+02 Score=28.23 Aligned_cols=16 Identities=13% Similarity=0.057 Sum_probs=7.4
Q ss_pred cCCHHHHHHHHHHHHH
Q 007626 485 AGNVDEANVIVAEMEE 500 (595)
Q Consensus 485 ~g~~~~A~~l~~~m~~ 500 (595)
.+++.+|+++|++...
T Consensus 167 leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.92 E-value=1.3e+02 Score=28.67 Aligned_cols=89 Identities=7% Similarity=0.030 Sum_probs=48.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Q 007626 196 FFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLS--- 272 (595)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--- 272 (595)
.=|.+++..+++.++....-+.-+.--+..+.+...-|-.|.|.+++..+.++-...++.--.-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34666777777777665443332211123344555556666777777777776666665432233334555544443
Q ss_pred --hcCCHHHHHHHH
Q 007626 273 --RIGEVKKAFEFF 284 (595)
Q Consensus 273 --~~g~~~~A~~~~ 284 (595)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 346666666665
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.90 E-value=40 Score=26.10 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=8.9
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 007626 551 CLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~ 569 (595)
.....|++++|.+.+++++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444455555554444444
No 362
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=64.77 E-value=43 Score=29.59 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 523 MVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
+++|...|++..+ ..|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 3344444444443 356666666665555
No 363
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.42 E-value=2.5e+02 Score=31.78 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007626 158 TYNLVMRSLCEMGLHDSVQVVFDYMRS 184 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~ 184 (595)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477788888888888888888887766
No 364
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.74 E-value=92 Score=26.48 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007626 229 YNSLLNALVKQNNADEAVYMFKEYFRLYS-----QPDTWTFNILIQGLSRIGE-VKKAFEFFYDMGSFGCSPDIVTYNTL 302 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (595)
.|.++.-....+++.-.+.+++.+..... ..+...|++++.+..+..- ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46666666666677766666666533211 2355567777777755554 33556677777776677777777777
Q ss_pred HHHHHh
Q 007626 303 ISGLCR 308 (595)
Q Consensus 303 i~~~~~ 308 (595)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 776654
No 365
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.33 E-value=1.4e+02 Score=28.52 Aligned_cols=100 Identities=8% Similarity=0.100 Sum_probs=59.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-
Q 007626 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNS----CGIKPSAVTFNV-LIDGFGKVGNMVSAEYMRERMLSFGYLPDVV- 403 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 403 (595)
--...+..+...||+.++.+.+.++..+..+ .|.+.|+....+ |.-.|....-.++..+..+.|++.|...+..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3456777888888888888888877766543 455555543332 2223344444566777778888877654332
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007626 404 ---TFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 404 ---~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
+|.-+- +....++.+|-.++.+....
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 232221 22345677777777666543
No 366
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.81 E-value=2.4e+02 Score=31.03 Aligned_cols=102 Identities=7% Similarity=0.006 Sum_probs=61.2
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHc
Q 007626 163 MRSLCEMGLHDSVQVVFDYMRSDGHLP---NSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQ 239 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (595)
|+.+.+.+.+++|++.-+.... ..| -.......|..+.-.|++++|-...-.|... +..-|---+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4667788888888877665433 233 2345667777788888888888877777643 344555555555555
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007626 240 NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR 273 (595)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 273 (595)
++.... +.-+....+..+...|..++..+..
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 544332 2222222223456677777777766
No 367
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=62.69 E-value=1.5e+02 Score=28.56 Aligned_cols=84 Identities=12% Similarity=-0.002 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------
Q 007626 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG--------- 521 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g--------- 521 (595)
.|...+.++...+ +......|...|.. ..+.++|...|....+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5556666655554 23333334433322 2356677777777766653 22222222 333333
Q ss_pred ------CHHHHHHHHHHHHHCCCCCCHHHH
Q 007626 522 ------RMVEAISIFNKMLRIGCAPDDITV 545 (595)
Q Consensus 522 ------~~~~A~~~~~~m~~~g~~p~~~~~ 545 (595)
+...|...+......+........
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 275 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNACEAL 275 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHHHHH
Confidence 556666666666655544433333
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.65 E-value=74 Score=25.03 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007626 480 DGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
..+...|++++|..+.+.+ ..||...|-.+-. .+.|-.+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3444555666665554443 2455555544432 34455555555555555444
No 369
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.41 E-value=1.4e+02 Score=28.19 Aligned_cols=204 Identities=14% Similarity=0.087 Sum_probs=119.6
Q ss_pred CCCCHhhHHHHHHHH-HhcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--
Q 007626 328 FSPDVVTYTSVISGY-CKLGKMDKATGIYNEMNSCGIK---PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF---GY-- 398 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~-~~~g~~~~A~~l~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~-- 398 (595)
..||+..=|..-.+- .+...+++|+.-|++..+..-. ..-.....++..+.+.+++++....+.++... .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 467765544332211 2345788999999998874312 22344566788889999999988888877531 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----
Q 007626 399 LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK-----NLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV---- 469 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---- 469 (595)
.-+..+.|++++......+.+-..++++.-.+. +-..-..|-+.|...|...+.+.+..++++++...--.
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 123456677777777777776666666543221 11112234456777777778888888888777654111
Q ss_pred CC-------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHH
Q 007626 470 PK-------PFMYNPVIDGFCKAGNVDEANVIVAEMEEK-RCKPDKVTFTILIIG-----HCMKGRMVEAISIFNK 532 (595)
Q Consensus 470 p~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~ 532 (595)
.| ..+|..=|+.|...++-..-..++++.... .--|.+..... |.- +.+.|++++|..-|-+
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHH
Confidence 11 345666677777777777777777775532 22344443332 222 3456666666544433
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.83 E-value=1.9e+02 Score=29.54 Aligned_cols=208 Identities=12% Similarity=0.006 Sum_probs=86.6
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHhccCCCCccCHH--HHHHHHHHHHHcCCH
Q 007626 167 CEMGLHDSVQVVFDYMRSDGHLPNSPM--IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTF--MYNSLLNALVKQNNA 242 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~ 242 (595)
+..|+.+-+..+ .+.|..|+... ..+.+...+..|+.+-+.-+++. |..++.. .....+...++.|+.
T Consensus 10 ~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH----GAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCccccCCCcccHHHHHHHCCCH
Confidence 445555443333 34454444322 22334445566766554444432 2222211 112234555667777
Q ss_pred hHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCHHHHHH
Q 007626 243 DEAVYMFKEYFRLYSQPDTW---TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY--NTLISGLCRVNEVARGHE 317 (595)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~ 317 (595)
+.+..+++ .|...+.. .-...+...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+.+-+..
T Consensus 82 ~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 82 KAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 66544443 22211100 0112333344556653 33334444555543221 223444556676655544
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 318 LLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVT---FNVLIDGFGKVGNMVSAEYMRERML 394 (595)
Q Consensus 318 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~m~ 394 (595)
+++.-.... ..|..-++.| ...+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+- .+.+.
T Consensus 154 Ll~~g~~~~--~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll 222 (413)
T PHA02875 154 LIDHKACLD--IEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFI 222 (413)
T ss_pred HHhcCCCCC--CCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHH
Confidence 443211100 1122222222 2334445543 3444556665554332 1234443445555443 33444
Q ss_pred hCCCCCC
Q 007626 395 SFGYLPD 401 (595)
Q Consensus 395 ~~g~~p~ 401 (595)
+.|..++
T Consensus 223 ~~gad~n 229 (413)
T PHA02875 223 KRGADCN 229 (413)
T ss_pred HCCcCcc
Confidence 4555554
No 371
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.81 E-value=21 Score=32.12 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=28.0
Q ss_pred CchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 007626 135 NPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSD 185 (595)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 185 (595)
++.....+.+|.+......|++..|..++.++...|+.++|.+..+++...
T Consensus 123 ~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 123 DPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444455555544444556666666666666666666666555555543
No 372
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.91 E-value=1.8e+02 Score=27.96 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007626 416 GQLNQGLKLCDEMKG-KNLSPNVYTFTILINALCK-EN-RLNDARRFLKQLKW-NDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 416 g~~~~A~~l~~~m~~-~~~~p~~~~~~~ll~~~~~-~g-~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
..+-+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..+++.+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345666777663322 2344566777777776655 22 22333333333332 23456777788888888888888888
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHH
Q 007626 492 NVIVAEMEEK-RCKPDKVTFTILIIGHCMKGRMVEAISIFNKM-----LRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 492 ~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~~~~~l~~~~ 552 (595)
.++|+..... +..-|..-|..+|......|+..-..++.++- .+.|+..+...-..|-..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 8888877654 45557778888888888888877666655431 2345555555554444443
No 373
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.68 E-value=1.9e+02 Score=28.22 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhCCCCCC----Hh
Q 007626 403 VTFSSLIDGYCRNGQLNQGLKLCDEMK----GKNLSPNVYTFTILINAL-CKENRLNDARRFLKQLKWNDLVPK----PF 473 (595)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~~~~~~~~~~~~p~----~~ 473 (595)
..+......||+.|+.+.|++.+++.. ..|.+.|+..+.+-+..+ ....-+.+-.+..+.+.+.|-.-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 345556667888888888887766543 336666666555443332 222223444444455555553322 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007626 474 MYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
+|..+-.. ...++.+|-.+|-+...
T Consensus 185 vY~Gly~m--svR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLYCM--SVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHH--HHHhHHHHHHHHHHHcc
Confidence 44444322 33477777777766553
No 374
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.53 E-value=1.1e+02 Score=25.59 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=39.7
Q ss_pred CCCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007626 469 VPKPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKRCK-PDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
.++..+--.+..++.+..+ ..+.+.++++..+...+ -.....-.|.-++.+.++++.+.++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3455555666666666553 44556677777652211 12233344555677777777777777777653
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.04 E-value=2.1e+02 Score=28.97 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=32.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHhhC
Q 007626 376 GFGKVGNMVSAEYMRERMLSFGYLPDVV--TFSSLIDGYC--RNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~g~~~~A~~l~~~m~~~ 431 (595)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445677777777777777765 334333 3344444442 355666777777766544
No 376
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.64 E-value=1.1e+02 Score=31.37 Aligned_cols=208 Identities=11% Similarity=0.077 Sum_probs=103.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHhh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhc
Q 007626 305 GLCRVNEVARGHELLKEVKFKSEFSPDVVT--YTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAV--TFNVLIDGFGKV 380 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~ 380 (595)
..+..|+.+-+..+++. + ..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 8 ~A~~~g~~~iv~~Ll~~----g-~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 8 DAILFGELDIARRLLDI----G-INPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHhCCHHHHHHHHHC----C-CCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 34556777666555542 2 4454322 234455556777765 444555667655533 122345566678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCHH
Q 007626 381 GNMVSAEYMRERMLSFGYLPDVV---TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVY---TFTILINALCKENRLN 454 (595)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~ 454 (595)
|+.+.+..+++. |...+.. .-.+.+...+..|+.+-+ +.+.+.|..|+.. -.+ .+...+..|+.+
T Consensus 79 g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~~~iv----~~Ll~~gad~~~~~~~g~t-pLh~A~~~~~~~ 149 (413)
T PHA02875 79 GDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKKLDIM----KLLIARGADPDIPNTDKFS-PLHLAVMMGDIK 149 (413)
T ss_pred CCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHH
Confidence 888776665543 3211111 112334445566776544 4444455444321 122 333445677776
Q ss_pred HHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHH
Q 007626 455 DARRFLKQLKWNDLVPK---PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTF---TILIIGHCMKGRMVEAIS 528 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~ 528 (595)
-+..+++ .|..++ ..-.+.| ...+..|+.+- .+.+.+.|..++...- .+.+...+..|+.+
T Consensus 150 ~v~~Ll~----~g~~~~~~d~~g~TpL-~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~---- 216 (413)
T PHA02875 150 GIELLID----HKACLDIEDCCGCTPL-IIAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID---- 216 (413)
T ss_pred HHHHHHh----cCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----
Confidence 5555443 343332 2223333 33445566554 4445566666654321 23444345566654
Q ss_pred HHHHHHHCCCCCCHH
Q 007626 529 IFNKMLRIGCAPDDI 543 (595)
Q Consensus 529 ~~~~m~~~g~~p~~~ 543 (595)
+.+.+++.|..++..
T Consensus 217 iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHHCCcCcchH
Confidence 444556677777654
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.48 E-value=41 Score=25.05 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=29.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 484 KAGNVDEANVIVAEMEEKRCKPD--KVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
...+.++|+..|....++-..+. -.++..++.+|+.-|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766533322 134566777777777777776654
No 378
>PRK10941 hypothetical protein; Provisional
Probab=55.28 E-value=85 Score=30.01 Aligned_cols=59 Identities=7% Similarity=-0.081 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 476 NPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 476 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+.+-.+|.+.++++.|+++.+.+.... +.|..-+.--.-.|.+.|.+..|..=++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444444555555555555555555442 11333343344445555555555555555544
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.80 E-value=84 Score=25.91 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007626 459 FLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
-+......++.|++.+...-++++.+..++..|.++|+-++.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555543
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.91 E-value=1.4e+02 Score=26.41 Aligned_cols=41 Identities=7% Similarity=0.131 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007626 488 VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
+++|...|++.... .|+...|+.-+.... .|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 34444455554443 566666666655442 244444444443
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.76 E-value=33 Score=24.26 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 007626 512 ILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555544443
No 382
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=50.86 E-value=2.6e+02 Score=27.61 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007626 399 LPDVVTFSSLIDGYCRNGQ------------LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN 466 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~------------~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 466 (595)
+-|+.+|-.++..--..-. .+.-+.++++.++.+ +.+......++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3466677666654332211 233344455544442 334444444555555555555555555555544
Q ss_pred CCCCCHhhHHHHHHHH
Q 007626 467 DLVPKPFMYNPVIDGF 482 (595)
Q Consensus 467 ~~~p~~~~~~~li~~~ 482 (595)
... +...|...++..
T Consensus 95 ~~~-~~~LW~~yL~~~ 109 (321)
T PF08424_consen 95 NPG-SPELWREYLDFR 109 (321)
T ss_pred CCC-ChHHHHHHHHHH
Confidence 321 344444444433
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.62 E-value=40 Score=23.80 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007626 543 ITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.-...++.+|...|++++|.++++.+.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334455566666666666666655543
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.01 E-value=1.1e+02 Score=32.27 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=50.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 007626 273 RIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 352 (595)
..|+...|...+.......-.-..+....|.....+.|..-.|..++.+..... .....++-.+..++.-..+.+.|+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHHH
Confidence 346666666655554422111122223334444445555556666655544322 122345555666666666667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 353 GIYNEMNSCGIKPSAVTFNVLIDGFG 378 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~ 378 (595)
+.|++..+.. +.+...-+.|...-|
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 6666666543 233444444444333
No 385
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.76 E-value=43 Score=32.22 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007626 511 TILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITV 545 (595)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 545 (595)
+..|....+.|++++|+.+++++.+.|..--..+|
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 45555555556666666666665555544433333
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.19 E-value=1.8e+02 Score=30.84 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=35.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007626 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKL 424 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 424 (595)
.|+...|.+.+.........-..+....|.....+.|....|-.++.+..... ...+-++-.+.+++.-..++++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34445555444444322111112223333344444444444444444433322 12233444444555555555555555
Q ss_pred HHHHhhC
Q 007626 425 CDEMKGK 431 (595)
Q Consensus 425 ~~~m~~~ 431 (595)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 5554444
No 387
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.12 E-value=1.4e+02 Score=23.93 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 007626 275 GEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGI 354 (595)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l 354 (595)
...++|..+.+.+...+. ....+--+-+..+.+.|++++|+ +.- .....||...|..|-. .+.|-.+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~---~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLP---QCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHH---TTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hhc---ccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 345667777666665442 12222223344556677777771 111 1113466666655543 366666666666
Q ss_pred HHHHHHCC
Q 007626 355 YNEMNSCG 362 (595)
Q Consensus 355 ~~~m~~~g 362 (595)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66665544
No 388
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.31 E-value=3.4e+02 Score=28.27 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=72.5
Q ss_pred HHHcCCHHHHHHHHHHH---HhCCCCCCH-----hhHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCH----
Q 007626 447 LCKENRLNDARRFLKQL---KWNDLVPKP-----FMYNPVIDGFCKAGNVDEANVIVAEMEE-------KRCKPDK---- 507 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~---~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~~---- 507 (595)
+.-.|++.+|.+++-.. ...|...++ ..||.|...+.+.|.+..+..+|.+... .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 44578888888877653 222322232 2346677777788889999999988774 3554432
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007626 508 -------VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKG 555 (595)
Q Consensus 508 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 555 (595)
.+||. .-.|...|++-.|.+.|.+.+.. +..++..|..|..+|...
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23443 23467789999999999888773 467888899998888643
No 389
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.78 E-value=2.9e+02 Score=27.23 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHhhH--HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH-H
Q 007626 442 ILINALCKENRLNDARRFLKQLKWN---DLVPKPFMY--NPVIDGFCKAGNVDEANVIVAEMEE-----KRCKPDKVT-F 510 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~-~ 510 (595)
.++...-+.++.++|.++++++.+. .-.|++..| ......+...|+.+++.+++++..+ .+++|++.+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3344455566788888888777543 223455444 3445555667778888777777765 466654443 4
Q ss_pred HHHHHHHH
Q 007626 511 TILIIGHC 518 (595)
Q Consensus 511 ~~li~~~~ 518 (595)
..+-.-|.
T Consensus 160 Y~lssqYy 167 (380)
T KOG2908|consen 160 YSLSSQYY 167 (380)
T ss_pred HHHHHHHH
Confidence 44444333
No 390
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.60 E-value=1.4e+02 Score=24.77 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 525 EAISIFNKMLRIGCAPD-DITVNSLISCLLKGGMPNEAFRIMQRA 568 (595)
Q Consensus 525 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (595)
++.++|+.|...|+.-. +..|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77888888887665444 455777777788888888888888764
No 391
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.13 E-value=83 Score=20.81 Aligned_cols=31 Identities=10% Similarity=0.317 Sum_probs=17.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007626 519 MKGRMVEAISIFNKMLRIGCAPDDITVNSLI 549 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 549 (595)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455556666666666666555555555444
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=45.57 E-value=84 Score=25.88 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+..+-+..+...++.|++.....-+.+|.+.+++..|.++|+-...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555566666667777777777777777777777777777776544
No 393
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.74 E-value=85 Score=20.75 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=19.3
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007626 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVS 199 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 199 (595)
-+.|-.+++..+++.|.+.|+.-+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455556666666666666666655555555543
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.52 E-value=14 Score=35.92 Aligned_cols=91 Identities=16% Similarity=-0.081 Sum_probs=53.7
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHH
Q 007626 168 EMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVY 247 (595)
Q Consensus 168 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (595)
..|.++.|++.|...++.. ++....|..-.+.+.+.+++..|++=++.....+. .+..-|-.-..+-.-.|++++|-.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~-Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP-DSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCc-ccccccchhhHHHHHhhchHHHHH
Confidence 4566777777777776665 55666666666667777777777766666655431 122223333333334566777777
Q ss_pred HHHHHHHcCCCCC
Q 007626 248 MFKEYFRLYSQPD 260 (595)
Q Consensus 248 ~~~~m~~~~~~~~ 260 (595)
.|....+.+..+.
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 7766666655433
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.43 E-value=1.4e+02 Score=22.99 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=31.1
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 483 CKAGNVDEANVIVAEMEEK----RCKPD----KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~----g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+.|++.+|.+.+.+..+. +.... ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567777775555554332 21111 12223344556678999999999888876
No 396
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.39 E-value=31 Score=28.71 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 165 SLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSC 201 (595)
Q Consensus 165 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 201 (595)
.+.+.|.-.+|-.+|+.|++.|.+|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44556777889999999999998888 577776653
No 397
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.00 E-value=4.5e+02 Score=28.43 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=25.7
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007626 423 KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 423 ~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
...+.+..+-...+...-..++..|.+.|-.+.|.++.+.+-..-.. ..-|..-+.-+.++|+.+....+...+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334433322234444555666666666666666666554332211 1233444444455555544444444333
No 398
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.70 E-value=2.4e+02 Score=25.29 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 007626 372 VLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 372 ~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
.++..|.+..++.+..++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777777777664
No 399
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.68 E-value=9.6 Score=22.07 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007626 521 GRMVEAISIFNKMLRIGCAPDDITVNSL 548 (595)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~p~~~~~~~l 548 (595)
|+.+.|..+|++++... +-+...|...
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHH
Confidence 34555666666655532 2344444433
No 400
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.90 E-value=1.2e+02 Score=24.25 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007626 509 TFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777777788888888888877765
No 401
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.86 E-value=2.9e+02 Score=25.86 Aligned_cols=56 Identities=7% Similarity=-0.038 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 007626 373 LIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC-RNGQLNQGLKLCDEM 428 (595)
Q Consensus 373 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m 428 (595)
+++.+-+.|+++++...++++...+...+..--+.|-.+|- ..|....+.+++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 44555666666666666666666655555555555555552 233334444444443
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.23 E-value=4.2e+02 Score=27.63 Aligned_cols=105 Identities=16% Similarity=0.098 Sum_probs=53.4
Q ss_pred HHhcCChhHHHHHHHHHH---HCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC-----
Q 007626 342 YCKLGKMDKATGIYNEMN---SCG--IKPSA---VTFNVLIDGFGKVGNMVSAEYMRERMLS-------FGYLPD----- 401 (595)
Q Consensus 342 ~~~~g~~~~A~~l~~~m~---~~g--~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~-------~g~~p~----- 401 (595)
+.-.|++..|.+++...- +.| +.|.. ..||.|.-.+.+.|.+..+..+|.+..+ .|+.|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445567777776664431 112 11111 1124444444555555555555544432 343332
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007626 402 ------VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALC 448 (595)
Q Consensus 402 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~ 448 (595)
..+||. .-.|...|++-.|.+.|.+.... +..++..|..|..+|.
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 123332 23456677777777777766554 3446667777776664
No 403
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=42.23 E-value=3.8e+02 Score=31.02 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 007626 369 TFNVLIDGFGKVG--NMVSAEYMRERMLSF 396 (595)
Q Consensus 369 ~~~~ll~~~~~~g--~~~~A~~~~~~m~~~ 396 (595)
.+..++.+|.+.+ ++++|+....++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3445666666666 667777776666654
No 404
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.89 E-value=3.9e+02 Score=27.12 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=40.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 007626 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVY--TFTILINALC--KENRLNDARRFLKQLKWN 466 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--~~~~ll~~~~--~~g~~~~A~~~~~~~~~~ 466 (595)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556889999999999999887 565554 3444445553 356788888888887654
No 405
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.79 E-value=3.4e+02 Score=26.45 Aligned_cols=30 Identities=10% Similarity=-0.020 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007626 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
+......++.+++...+.+...++++....
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 344444444444444444444444444444
No 406
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.05 E-value=1.6e+02 Score=22.50 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=18.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 519 MKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 561 (595)
..|+.+.|.+++..+. .| +..|...+.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3455555555555554 22 22444555555555544433
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.98 E-value=1.9e+02 Score=25.71 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHHcCCCCCH--HHH-----HHHHHHHHhcCCHHHHHHHHHHHhh
Q 007626 242 ADEAVYMFKEYFRLYSQPDT--WTF-----NILIQGLSRIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~--~~~-----~~li~~~~~~g~~~~A~~~~~~m~~ 289 (595)
.+.|+.+|+.+.+.-..|+. ... ...+-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45566666666554332211 111 1233456667777777777766654
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.48 E-value=2e+02 Score=25.66 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007626 516 GHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (595)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34445555555555554443
No 409
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.41 E-value=4.4e+02 Score=27.33 Aligned_cols=123 Identities=10% Similarity=-0.001 Sum_probs=75.4
Q ss_pred HHHHHHcCCchHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007626 163 MRSLCEMGLHDSVQVVFDY-MRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
|.--...|+...|-+-+.. +....-.|+.. ..........|.++.+.+.+...... +.....+...++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 4444456666666544433 33332233333 33334456778888888887766543 23345567778888888888
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007626 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (595)
+++|...-+-|+...++ +........-..-..|-++++.-.+++...
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 88888888888776653 444444444444555677888877777754
No 410
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.41 E-value=2.2e+02 Score=23.93 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007626 436 NVYTFTILINALCKENR---LNDARRFLKQLKWN-DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+..+-..+..++.+..+ ..+.+.+++.+.+. ...-.....-.|.-++.+.|+++.+.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 33344444444444333 44455555555541 11112223334445566666666666666666554
No 411
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.73 E-value=1.8e+02 Score=28.73 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI 202 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (595)
-|-++++.....|.+++++.+|+.+...|..|-...-..++..+-
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 567778888888888888888888888887777766666666654
No 412
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.47 E-value=3.7e+02 Score=26.14 Aligned_cols=18 Identities=17% Similarity=0.693 Sum_probs=10.6
Q ss_pred hHHHHHHHHHhcCChhHH
Q 007626 334 TYTSVISGYCKLGKMDKA 351 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A 351 (595)
.|..|+.++|..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455666666666665543
No 413
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.15 E-value=3.3e+02 Score=25.45 Aligned_cols=129 Identities=15% Similarity=0.234 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 007626 370 FNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK 449 (595)
Q Consensus 370 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~ 449 (595)
...-+..|.+.-++.-|-...+++.+ | ..+-.+++ -|.+..+..--.++.+-....+++-+.....+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 44456666666666666666666554 2 12222222 2444444444444555445555555555555544 456
Q ss_pred cCCHHHHHHHHHHHHhC-C-----------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007626 450 ENRLNDARRFLKQLKWN-D-----------LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK 507 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 507 (595)
.|+..+|..-++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|+.|..
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 78888888877764321 1 1356666666666544 36788888888888888777643
No 414
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=38.70 E-value=1.2e+02 Score=20.57 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=9.3
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007626 516 GHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (595)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44445555555555554444
No 415
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.61 E-value=1.4e+02 Score=23.98 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007626 150 LSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI 202 (595)
Q Consensus 150 ~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (595)
.|+.|+ +|+.+.++...++|+++++.|.+.| ..+...-+.|-..+.
T Consensus 61 sGy~Pt------ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 61 SGYNPT------VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred cCCCCh------HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 355666 5666778888899999999999988 666655555544443
No 416
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.57 E-value=31 Score=28.65 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=21.8
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007626 237 VKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQG 270 (595)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 270 (595)
-+.|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456667788888888888877764 5555543
No 417
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.49 E-value=3.4e+02 Score=25.44 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=62.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHH
Q 007626 342 YCKLGKMDKATGIYNEMNSCGIKPSAV-TFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS-SLIDGYCRNGQLN 419 (595)
Q Consensus 342 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~ 419 (595)
|....+++.|+..|.+.+. +.|+.. -|+.-+-++.+..+++.+..--.+..+. .|+.+--. .+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 4445567777776666555 346653 3455566667777777776655555553 45544333 2334555666777
Q ss_pred HHHHHHHHHhh----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007626 420 QGLKLCDEMKG----KNLSPNVYTFTILINALCKENRLNDARRFLKQ 462 (595)
Q Consensus 420 ~A~~l~~~m~~----~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 462 (595)
+|+..+.+... ..+++-......|..+--+.=...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77777766532 23334344444444443333333344444433
No 418
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.73 E-value=3.3e+02 Score=25.15 Aligned_cols=102 Identities=17% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007626 466 NDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC-KPDKVTF--TILIIGHCMKGRMVEAISIFNKMLRIGCAPDD 542 (595)
Q Consensus 466 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 542 (595)
..+.+...-+|.|+--|.-...+.+|.+.|..=..... .+|..++ ..-|......|+.++|++.....-..-+.-|.
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Q ss_pred HHHHHHHH----HHHhcCCHHHHHHHHHH
Q 007626 543 ITVNSLIS----CLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 543 ~~~~~l~~----~~~~~g~~~~A~~~~~~ 567 (595)
..+-.|.. -+.+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 419
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.49 E-value=2.5e+02 Score=28.50 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 007626 160 NLVMRSLCEMGLHDSVQVVFDYMRS--DGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF 217 (595)
Q Consensus 160 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 217 (595)
--|++...-.|++....+.++.|.+ .|..|...+-..+.-+|.-.|++.+|.+.|-.+
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666666655 233333333244555666667777777766554
No 420
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.93 E-value=1.4e+02 Score=25.39 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHc
Q 007626 243 DEAVYMFKEYFRL 255 (595)
Q Consensus 243 ~~A~~~~~~m~~~ 255 (595)
-.|.++|+++.+.
T Consensus 37 ~sAeei~~~l~~~ 49 (145)
T COG0735 37 LSAEELYEELREE 49 (145)
T ss_pred CCHHHHHHHHHHh
Confidence 3333344333333
No 421
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.85 E-value=3.5e+02 Score=29.21 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007626 335 YTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERM 393 (595)
Q Consensus 335 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 393 (595)
-.-++..|.+.|..+.|.++.+.+-..- ....-|..-+.-+.+.|+...+..+.+.+
T Consensus 408 ~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 408 AEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444555555555555544443221 11223344444444555544444433333
No 422
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.37 E-value=1.5e+02 Score=22.12 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007626 151 SLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFF 197 (595)
Q Consensus 151 ~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 197 (595)
|+.|+ +++.+.++.-.++|+++++.|.+.| ..+...-+.|
T Consensus 32 gy~Pt------V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 32 GYNPT------VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred CCCch------HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 55565 5566677777888888888888887 5555444333
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.00 E-value=67 Score=30.96 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 007626 230 NSLLNALVKQNNADEAVYMFKEYFRLYS 257 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (595)
+.-|....+.|++++|+.++++..+.|.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455555555555555555555555544
No 424
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=35.90 E-value=2.5e+02 Score=23.09 Aligned_cols=62 Identities=21% Similarity=0.111 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCC-HHHHHHH----HHHHHhcCCHHHHHHHHHHHH
Q 007626 508 VTFTILIIGHCMKGRMVEAISIFNKMLR----IG-CAPD-DITVNSL----ISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~-~~~~~~l----~~~~~~~g~~~~A~~~~~~~~ 569 (595)
..+..|-.++...|++++++.--++.+. .| +..| ...|... ..++-..|+.++|...|+.+.
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3444455555666666654443333221 11 2222 2233222 235667788888888776543
No 425
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.67 E-value=5.1e+02 Score=26.63 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
++.+.|+.++..|.+.|..|....-..++.++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45556666666666555555444434344333
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.35 E-value=5e+02 Score=26.43 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccCCCCcc---CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 007626 193 MIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTM---STFMYNSLLNALVKQNNADEAVYMFKEY 252 (595)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (595)
.+.-+...|...|+++.|++.|.+..+- +.. ....|-.+|..-.-.|+|........+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 3445555555666666666666554331 111 1222333344444445555444444443
No 427
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=35.16 E-value=1.5e+02 Score=20.23 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=17.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007626 478 VIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTF 510 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 510 (595)
+.-++.+.|++++|.+..+.+.+. .|+....
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 444556666677776666666654 4554433
No 428
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.02 E-value=4.8e+02 Score=26.22 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=32.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 007626 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALC-KENRLNDARRFLKQLK 464 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~ 464 (595)
|..+.+.|-+..|+++.+-+......-|+.....+|+.|+ +.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3455666666666666666666654435555555555553 4555665666555543
No 429
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.01 E-value=2.4e+02 Score=22.64 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 453 LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNK 532 (595)
Q Consensus 453 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (595)
.++|..+.+-+...+.. ...+--+-+..+.+.|++++| +..-.. ...||...|-.|- -.+.|-.+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 45555555555444321 222222333344455555555 111111 1234444443332 2345555555555554
Q ss_pred HHHC
Q 007626 533 MLRI 536 (595)
Q Consensus 533 m~~~ 536 (595)
+...
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 4433
No 430
>PRK10941 hypothetical protein; Provisional
Probab=34.25 E-value=4.3e+02 Score=25.33 Aligned_cols=60 Identities=10% Similarity=-0.090 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007626 266 ILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKS 326 (595)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (595)
.+-.+|.+.++++.|++..+.+.... +.+..-+.--.-.|.+.|.+..|..-++......
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 44445556666666666666655432 2223334444444555666666655555554443
No 431
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.67 E-value=4.2e+02 Score=31.23 Aligned_cols=151 Identities=14% Similarity=0.078 Sum_probs=82.8
Q ss_pred HhcCChhHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhCCCCCCHHHHHHHH
Q 007626 343 CKLGKMDKATG------IYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERM-------LSFGYLPDVVTFSSLI 409 (595)
Q Consensus 343 ~~~g~~~~A~~------l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~~~~~~li 409 (595)
...|.+.+|.+ ++......-.+.....|..+...+.+.|+.++|...-... ......-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 34455555555 4442221112445567777888888888888887654432 2222222445566666
Q ss_pred HHHHHcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC--CCCHhhH
Q 007626 410 DGYCRNGQLNQGLKLCDEMKGK-------NLSPNVYTFTILINALCKENRLNDARRFLKQLKWN-----DL--VPKPFMY 475 (595)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~--~p~~~~~ 475 (595)
-.....++...|+..+.+.... ..||...+++.+-..+-..++++.|.++++.+... |. ..+..+|
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 5666666777777666654332 13444444444444445557777787777776542 11 1234455
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 007626 476 NPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 476 ~~li~~~~~~g~~~~A~~ 493 (595)
..+.+.+...+++..|..
T Consensus 1103 ~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 566555555555555443
No 432
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.09 E-value=5.6e+02 Score=26.33 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=20.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGF 377 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 377 (595)
..+.+.|+.++..|.+.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467777777777777777666544444444333
No 433
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.06 E-value=4.9e+02 Score=25.72 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHh
Q 007626 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGK---NLSPNVYTFT--ILINALCKENRLNDARRFLKQLKW-----NDLVPKPF 473 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~p~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~ 473 (595)
....++...-+.++.++|+++++++.+. .-.|+...|. .+...+...|+.+++.+.+.+..+ .+++|+..
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3344555666778999999999998654 2255666554 445566788999999999999877 56666443
Q ss_pred -hHHHHHHHHH
Q 007626 474 -MYNPVIDGFC 483 (595)
Q Consensus 474 -~~~~li~~~~ 483 (595)
.|..+-.-|.
T Consensus 157 ~~fY~lssqYy 167 (380)
T KOG2908|consen 157 SSFYSLSSQYY 167 (380)
T ss_pred hhHHHHHHHHH
Confidence 3444444443
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.96 E-value=2.8e+02 Score=22.87 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007626 455 DARRFLKQLKWNDLVP-KPFMYNPVIDGFCKAGNVDEANVIVAE 497 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~ 497 (595)
.+.++|+.|...++-- -+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555444332 234455555555555555555555543
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.59 E-value=2.7e+02 Score=27.01 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007626 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC 413 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 413 (595)
++++.|.+.++.|.-..+.-+.-.+.+.=.+.++..+|+.+.. |..-|..|+..||
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 4555666666666666665555555555566666666666654 2223444554444
No 436
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.41 E-value=7.8e+02 Score=27.84 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=26.5
Q ss_pred HHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 007626 198 VSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEY 252 (595)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (595)
=+.|...|+++.|.++-+.-++ .-..++..-...|...+++..|-++|-++
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~----~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPD----ALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3455666666666665433210 00122333345555666677776666665
No 437
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.39 E-value=82 Score=32.35 Aligned_cols=105 Identities=7% Similarity=-0.092 Sum_probs=66.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007626 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
.+.+.+.+.++.|+.++.++++.. +..+..|..-..++.+.+++..|+.=..++++.. +--...|..=..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHH
Confidence 455667788888999998888864 3344445555577788888888887777777654 11222333333445555667
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007626 243 DEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
.+|...|+.... +.|+..-...++.-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 777777777665 356666555555444
No 438
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.38 E-value=1.3e+02 Score=21.53 Aligned_cols=49 Identities=14% Similarity=-0.044 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007626 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIR 203 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (595)
|....++.++...++..-.++++..+.++...| .-+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455677778888888777888888888888877 4566666666666554
No 439
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.30 E-value=95 Score=22.22 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=30.0
Q ss_pred cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007626 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRI 274 (595)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 274 (595)
+....++.+++..++..-.++++..+.+..+.|. -+..+|.--++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3445666666666666667777777777766664 4555555555555543
No 440
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.27 E-value=4.7e+02 Score=25.23 Aligned_cols=22 Identities=0% Similarity=-0.082 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 007626 369 TFNVLIDGFGKVGNMVSAEYMR 390 (595)
Q Consensus 369 ~~~~ll~~~~~~g~~~~A~~~~ 390 (595)
.+..+..-|++.++.+.+.++.
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~ 138 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWM 138 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHH
Confidence 3444444455555544444433
No 441
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=32.24 E-value=5.3e+02 Score=25.87 Aligned_cols=122 Identities=15% Similarity=0.102 Sum_probs=66.5
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007626 407 SLIDGYCRNGQ---LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC 483 (595)
Q Consensus 407 ~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (595)
.+++.+...++ +-+|.-+++...... +.|...-..++..|...|-.+.|...|..+.-+.+.-|...|..+ .-+.
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~-~r~~ 262 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLIL-DRLS 262 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHH-HHHh
Confidence 34444444444 446666777766654 566777777888888889999998888877655554443322222 2233
Q ss_pred HcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007626 484 KAGNVDEAN-VIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 484 ~~g~~~~A~-~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
..|....+. .++......-.. +.....-.+....+.|.+.+..++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~fy~~-~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 263 TLGPFKSAPENLLENALKFYDN-SEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred ccCcccccchHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 344444444 555544432101 11122223444456676666655544
No 442
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.23 E-value=8.5e+02 Score=28.19 Aligned_cols=248 Identities=12% Similarity=0.031 Sum_probs=146.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 007626 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL 267 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 267 (595)
.+++.+-...+..+.+.+..+ +...+..+.. .++..+-...+.++.+.+........+..+++ .+|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHH
Confidence 567878888888888887654 4444445443 34555555666666555432222334444444 2566666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 007626 268 IQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGK 347 (595)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 347 (595)
+..+...+..+ ...+.. +.+ .+|...-...+.++.+.+..+. +..... .++...-...+.++...+.
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~----D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT----DENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc----CCCHHHHHHHHHHHHHhcc
Confidence 66666544221 222333 332 3566666666777766655432 222222 3566666777777777766
Q ss_pred hhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007626 348 MDK-ATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCD 426 (595)
Q Consensus 348 ~~~-A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 426 (595)
.+. +...+..+.. .++...-...+.++.+.|....+...+..+.+. +|...-...+.++...+. +++...+.
T Consensus 772 ~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 772 GGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHH
Confidence 543 3455556554 467778888888999988876654555555543 466666667777777775 45666666
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007626 427 EMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 427 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
.+.+. |+..+-...+.++.+.+....+...+..+.+
T Consensus 845 ~~L~D---~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALTD---PHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhcC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66543 4666777777777775434566666666655
No 443
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.02 E-value=5.1e+02 Score=25.53 Aligned_cols=97 Identities=11% Similarity=-0.009 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007626 364 KPSAVTFNVLIDGFGKVGN------------MVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 364 ~p~~~~~~~ll~~~~~~g~------------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
+-|+.+|-.++..--..-. .+.-..++++.++.. +-+......++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5678888888865433221 244567888888773 356677788888899999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 007626 432 NLSPNVYTFTILINALCK---ENRLNDARRFLKQ 462 (595)
Q Consensus 432 ~~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~ 462 (595)
. +-+...|...++.... .-.++....+|.+
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3 4467777777765543 1234555555444
No 444
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.02 E-value=2.3e+02 Score=22.69 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=5.0
Q ss_pred HHHcCCHhHHHHHH
Q 007626 236 LVKQNNADEAVYMF 249 (595)
Q Consensus 236 ~~~~g~~~~A~~~~ 249 (595)
|...|..++|++++
T Consensus 49 Y~~kg~h~~AL~ll 62 (108)
T PF10366_consen 49 YQGKGLHRKALELL 62 (108)
T ss_pred HHccCccHHHHHHH
Confidence 33333333333333
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.86 E-value=5.7e+02 Score=26.05 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC---------CCccC
Q 007626 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSD--GHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG---------EVTMS 225 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 225 (595)
..+.-+..-|...|+++.|++.|.+.... ........|-.+|..-.-.|+|........+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46788889999999999999999996551 11234455666777767778887776666665442 12333
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHH
Q 007626 226 TFMYNSLLNALVKQNNADEAVYMF 249 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~ 249 (595)
...+..|.+...+ ++..|.+.|
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHH
Confidence 4444444444433 555555444
No 446
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.22 E-value=5.5e+02 Score=25.70 Aligned_cols=118 Identities=10% Similarity=0.095 Sum_probs=60.0
Q ss_pred chhHHHHHHhc--CCchHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007626 123 PLNSLEVIKRL--DNPKLGLKFLEFSRVNLSL-NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVS 199 (595)
Q Consensus 123 ~~~~~~~l~~~--~~~~~a~~~~~~~~~~~~~-~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 199 (595)
+..+..+|..+ +.+.++.-++-.......- .|++.+.-.++.-+....+-++....-..... ++..+..
T Consensus 39 ~~~~~~~L~~ld~~~hSlgml~~l~~~f~~~~~~~~~~~li~~~~~FV~~~n~eqlr~as~~f~~--------lc~~l~~ 110 (422)
T KOG2582|consen 39 SSDLDAVLLHLDPQVHSLGMLAVLKVKFHTPSANPDPETLIELLNDFVDENNGEQLRLASEIFFP--------LCHDLTE 110 (422)
T ss_pred cchHHHHHHhcCccccchhhhhhhhccccCcccCCCHHHHHHHHHHHHHhcChHHHhhHHHHHHH--------HHHHHHH
Confidence 34555666666 3344444444333332222 47788888888888777764443332222221 4556666
Q ss_pred HHHhcCChHHHHHHHHhc----cCCCCccCHHHHHHHHHHHHHcCCHhHHHHHH
Q 007626 200 SCIRAGKCDAAKGLLSQF----RPGEVTMSTFMYNSLLNALVKQNNADEAVYMF 249 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (595)
++.+.+.+....++..+. ....-. -......++..+.+.+++..+...+
T Consensus 111 ~~~~~~~p~~gi~ii~~av~k~~~~~~q-lT~~H~~l~~~~L~ak~y~~~~p~l 163 (422)
T KOG2582|consen 111 AVVKKNKPLRGIRIIMQAVDKMQPSNGQ-LTSIHADLLQLCLEAKDYASVLPYL 163 (422)
T ss_pred HHHhcCCccccchHHHHHHHHhccCccc-hhhhHHHHHHHHHHhhcccccCCcc
Confidence 666666655544443333 222111 1223444566666666665554433
No 447
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=31.14 E-value=7.4e+02 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHhC
Q 007626 438 YTFTILINALCK---ENRLNDARRFLKQLKWN 466 (595)
Q Consensus 438 ~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~ 466 (595)
.-+..||..|.+ ..+..+|.+++-.+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 345566666654 34566666666655543
No 448
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.78 E-value=4.6e+02 Score=24.63 Aligned_cols=117 Identities=9% Similarity=-0.075 Sum_probs=58.3
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHH
Q 007626 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYT-FTILINALCKENRLNDARRFLKQLKWNDLVPKP-FMYNPVIDGFCKAGNVD 489 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~ 489 (595)
|....+++.|..-|.+.+.. .|+..+ |+.-+-.+.+..+++.+..--.+..+. .|+. ...-.+...+.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44455666777666555543 444433 334444555666666666555555433 3332 23334445555666677
Q ss_pred HHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 490 EANVIVAEMEEK----RCKPDKVTFTILIIGHCMKGRMVEAISIFNK 532 (595)
Q Consensus 490 ~A~~l~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (595)
+|+..+.+.... .++|-......|..+--..=...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 777777666322 2333334444444443333333344444433
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.76 E-value=4.7e+02 Score=24.82 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=9.0
Q ss_pred HHcCCHHHHHHHHHHHH
Q 007626 483 CKAGNVDEANVIVAEME 499 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~ 499 (595)
.-.++...|...+....
T Consensus 152 L~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHTTBHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 33455666655555544
No 450
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.52 E-value=7e+02 Score=26.71 Aligned_cols=155 Identities=15% Similarity=0.034 Sum_probs=95.3
Q ss_pred cCCchHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHhc-------cCCCC--------
Q 007626 169 MGLHDSVQVVFDYMRSDG-----------HLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF-------RPGEV-------- 222 (595)
Q Consensus 169 ~g~~~~A~~~~~~m~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~-------- 222 (595)
...+++|...|.-....- .|-...++-.+...+...|+.+-|..++++. ....+
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 334556666665554421 1334556677777888888877666655543 22111
Q ss_pred -----ccCHHHHHHH---HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCC--
Q 007626 223 -----TMSTFMYNSL---LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLS-RIGEVKKAFEFFYDMGSFG-- 291 (595)
Q Consensus 223 -----~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g-- 291 (595)
+-+...|-+| +..+.+.|-+..|.++.+-+.+..+.-|+.....+|..|+ +..+++-.+++++......
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 2233344333 5566788999999999999999887668888888888775 5677887777777764322
Q ss_pred -CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 007626 292 -CSPDIVTYNTLISGLCRVNE---VARGHELLKEVK 323 (595)
Q Consensus 292 -~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~~~ 323 (595)
.-||-.--..+...|.+... -..|...+.+..
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 34554444455555555444 344444444443
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.94 E-value=2.8e+02 Score=26.91 Aligned_cols=42 Identities=26% Similarity=0.424 Sum_probs=24.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007626 423 KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 423 ~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (595)
++++.|...++.|.-+++.-+.-.+.+.=.+...+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555566666555555555555555566666665554
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.47 E-value=3.1e+02 Score=25.82 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007626 513 LIIGHCMKGRMVEAISIFNKMLR----IG-CAPDDITVNSLISCLLKGGMPNEAFRIM 565 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (595)
+..-|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++.+.+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44455566666666666666542 12 1233344555566666666666665543
No 453
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.28 E-value=40 Score=32.94 Aligned_cols=88 Identities=16% Similarity=0.007 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 007626 415 NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVI 494 (595)
Q Consensus 415 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 494 (595)
.|.++.|++.|...+... ++....|..-..++.+.+++..|++-+....+.+.. ...-|-.-..+-.-.|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 344555555554444442 333334444444444455555554444444433211 112222222223334455555555
Q ss_pred HHHHHHCCCC
Q 007626 495 VAEMEEKRCK 504 (595)
Q Consensus 495 ~~~m~~~g~~ 504 (595)
++...+.++.
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 5555554443
No 454
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.27 E-value=1.5e+02 Score=25.24 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007626 161 LVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK 206 (595)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 206 (595)
.+++.+.+.+..-.|.++|+.+.+.+..-+..|....+..+...|-
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3555556665666666666666666555555555555555555543
No 455
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.59 E-value=1.7e+02 Score=23.49 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 007626 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCD 208 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 208 (595)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45566666666777777877777765666667666777776666543
No 456
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.49 E-value=5.5e+02 Score=24.85 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007626 408 LIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
++..+.+.++..+....+..+. ....-...+..+...|++..|.+++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444441 334444455566667777777776665543
No 457
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=27.79 E-value=1.6e+02 Score=23.95 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 007626 160 NLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKC 207 (595)
Q Consensus 160 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (595)
..++..+.+.+..-.|.++++.+.+.+...+..|....+..+.+.|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 346677777777888888888888877777777777777777777654
No 458
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.76 E-value=2.9e+02 Score=25.93 Aligned_cols=56 Identities=20% Similarity=0.134 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 266 ILIQGLSRIGEVKKAFEFFYDMGS----FG-CSPDIVTYNTLISGLCRVNEVARGHELLKE 321 (595)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 321 (595)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344455555555555555555531 11 122333444455555566666555554433
No 459
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.63 E-value=7.4e+02 Score=26.05 Aligned_cols=84 Identities=11% Similarity=0.041 Sum_probs=65.9
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007626 503 CKPDKVTF-TILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL--KGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 503 ~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
..|+..|+ +.++.-+.+.|-+.+|...+..+.... +|+...|..++..-. .+-+...++++++.|....|.+...|
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLW 533 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHH
Confidence 45677776 667778888999999999999998865 788888888887432 23348899999999999999888888
Q ss_pred cccccccc
Q 007626 580 KKAVPLRT 587 (595)
Q Consensus 580 ~~~~~~~~ 587 (595)
..-..++.
T Consensus 534 ~~y~~~e~ 541 (568)
T KOG2396|consen 534 MDYMKEEL 541 (568)
T ss_pred HHHHHhhc
Confidence 77554444
No 460
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=27.58 E-value=6.6e+02 Score=25.45 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007626 266 ILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m 287 (595)
.|...+-..|++++|..++.+.
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc
Confidence 4555666777888877777655
No 461
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.36 E-value=2.8e+02 Score=21.15 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007626 528 SIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 528 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
++|+-....|+..|+..|..+++.+.-.--++...++++.+.......
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~~~~ 76 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGSRLA 76 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcccccC
Confidence 666666667777777777777777766667777777777776554433
No 462
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.33 E-value=3.4e+02 Score=29.40 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChH------HHHHHHHhccCCCCccCHHHHHHH
Q 007626 161 LVMRSLCEMGLHDSVQVVFDYMRSD--GHLPNSPMIEFFVSSCIRAGKCD------AAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
.|..+|..+|++..+.++++.+... |-..-...++..|+...+.|.++ .|.+++++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6778888888888888888887763 22333456777777788887754 4555555554 23356667666
Q ss_pred HHHHH
Q 007626 233 LNALV 237 (595)
Q Consensus 233 i~~~~ 237 (595)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 65543
No 463
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.83 E-value=2.9e+02 Score=21.15 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 007626 418 LNQGLKLCDEM 428 (595)
Q Consensus 418 ~~~A~~l~~~m 428 (595)
.+.|.++++.+
T Consensus 52 ~~~ar~LL~~L 62 (88)
T cd08819 52 ESGARELLKRI 62 (88)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 464
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=26.69 E-value=2.3e+02 Score=19.96 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=22.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHH
Q 007626 518 CMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL-----LKGGMPNEAFRI 564 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-----~~~g~~~~A~~~ 564 (595)
...|++-+|.++++.+-...-.+....+..||... .+.|+.+.|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566666666666655422223334444444432 345555555544
No 465
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.40 E-value=6.8e+02 Score=25.19 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHH------HcCCHHHHHHHHHHHhhCCCCCC
Q 007626 364 KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLID-GYC------RNGQLNQGLKLCDEMKGKNLSPN 436 (595)
Q Consensus 364 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~------~~g~~~~A~~l~~~m~~~~~~p~ 436 (595)
+-.+.++-.+-..+...|+.+.|.+++++..- ++..... .+. ..|.. -..-...-|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf--------~~e~~~~~~F~~~~~~~~~g~~---------rL~~~~~eN 99 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALF--------AFERAFHPSFSPFRSNLTSGNC---------RLDYRRPEN 99 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHhhhhhcccccCcc---------ccCCccccc
Confidence 33455666666677777777777777766542 1111110 000 00000 001112335
Q ss_pred HHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 007626 437 VYTFTIL---INALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC-KAGNVDEANVIVAEMEE 500 (595)
Q Consensus 437 ~~~~~~l---l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~ 500 (595)
...|.++ +..+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ ++++++--+++.+....
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5555554 4567889999999999999999887778888888888886 67788888888887665
No 466
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.24 E-value=5.1e+02 Score=23.75 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCCCC----CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007626 489 DEANVIVAEMEEKRCKP----DKVTF-TILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p----~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
..|.+.|.+..+..-.| +..+. -.+.....+.|+.++|.++|.+++..+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34555555555442221 22233 234445567888999999988888754
No 467
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.18 E-value=2.7e+02 Score=22.06 Aligned_cols=21 Identities=14% Similarity=0.479 Sum_probs=9.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 007626 408 LIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m 428 (595)
++..|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444455555555555443
No 468
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.76 E-value=8.3e+02 Score=26.00 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 007626 407 SLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m 428 (595)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3455666666666666666665
No 469
>PRK09857 putative transposase; Provisional
Probab=25.37 E-value=5.8e+02 Score=24.79 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007626 477 PVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD 541 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 541 (595)
.++......++.++-.++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334445544445555444433 222223333444445555555566666666666665544
No 470
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=25.08 E-value=2.2e+02 Score=23.82 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=28.8
Q ss_pred HHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007626 494 IVAEMEEKRC-KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP 540 (595)
Q Consensus 494 l~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 540 (595)
..+...+.|- .+|.+....++ -+...|+++.|+.+.+.+++.|...
T Consensus 35 ~v~g~L~~g~g~qd~Vl~~~mv-W~~D~Gd~~~AL~~a~yAi~~~l~~ 81 (132)
T PF05944_consen 35 WVEGVLASGSGAQDDVLMTVMV-WLFDVGDFDGALDIAEYAIEHGLPM 81 (132)
T ss_pred HHHHHHHcCCCCcCchHHhhHh-hhhcccCHHHHHHHHHHHHHcCCCc
Confidence 4444444332 34544444444 4568899999999999999888543
No 471
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=24.66 E-value=5.9e+02 Score=23.87 Aligned_cols=136 Identities=11% Similarity=0.139 Sum_probs=74.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007626 337 SVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG 416 (595)
Q Consensus 337 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 416 (595)
.-+..|.+.-++.-|-...++..+ | ..+-.+++ -|.+..+-.--.++.+-....++.-+.....+++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 344555555555555554444432 2 22222222 3555555555555555555555555555555544 44578
Q ss_pred CHHHHHHHHHHHhhC-C-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007626 417 QLNQGLKLCDEMKGK-N-----------LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~-~-----------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (595)
+...|+..+..-... | -.|.+.....++..| ..+++++|.+.+.++-+.|..|.. ..+.+.+.+
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 888888776643321 1 146666666666654 456788888888888888876533 334444443
No 472
>PRK09857 putative transposase; Provisional
Probab=24.65 E-value=4.7e+02 Score=25.39 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007626 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD 506 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 506 (595)
..++....+.++.++-.++++.+.+.. ........++..-+...|.-+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444444455555555555554432 22222333455555555555667777777777776544
No 473
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.28 E-value=7.2e+02 Score=24.75 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007626 383 MVSAEYMRERMLSFGYLPDV----VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALC 448 (595)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~ 448 (595)
.+++..++..++.. .|+. .-|-.++......|.++.++.+|++.+..|..|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45666677766664 4554 3566777777788888888888888888888877766666666654
No 474
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.27 E-value=1e+03 Score=26.51 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 007626 335 YTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 335 ~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
...++-.|....+++..+++.+.+..
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHh
Confidence 34444455555566666666666654
No 475
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.21 E-value=5.3e+02 Score=28.10 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHhhCCCCCCHHHHHHH
Q 007626 231 SLLNALVKQNNADEAVYMFKEYFRLY--SQPDTWTFNILIQGLSRIGEVK------KAFEFFYDMGSFGCSPDIVTYNTL 302 (595)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 302 (595)
+|+.+|...|++..+.++++.+.... -+.-...||..|+.+.+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 89999999999999999999987643 2223557888899999999764 3444444443 55688899888
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 007626 303 ISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~ 323 (595)
+.+-..--+-.-..-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 876655333333334444443
No 476
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=23.74 E-value=4.6e+02 Score=24.57 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007626 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (595)
+++|...++.-.. ...+..+.-.+..++...|+...+..+++.+.
T Consensus 115 i~kA~~~L~~~~~--~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 115 INKALNYLERHLD--NIQDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp HHHHHHHHHHHHG--CTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--ccCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 3455555554422 13466666566666677777777777776664
No 477
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.55 E-value=1.7e+03 Score=28.78 Aligned_cols=293 Identities=10% Similarity=0.015 Sum_probs=145.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 007626 266 ILIQGLSRIGEVKKAFEFFYDM----GSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISG 341 (595)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~ 341 (595)
.+..+-.+.+.+.+|+..++.- .+. .-....|..+...|...+++|....+...-.. .|+ ....|..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHH
Confidence 4455666777888888888773 211 11223344445578888888887777664211 122 3334455
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHH
Q 007626 342 YCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSS-LIDGYCRNGQLNQ 420 (595)
Q Consensus 342 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~ 420 (595)
....|++..|...|+.+.+.+ ++...+++-+++.....|.++......+...... .+....++. =+.+-.+.+++|.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhh
Confidence 677888999999999888765 3446667766666666666666665554443321 112222222 2233345555554
Q ss_pred HHHHHH--------------HHhhCCCCCCHHHH-HHH----------HHHHHHcCCHHHHHHHHHHH---------Hh-
Q 007626 421 GLKLCD--------------EMKGKNLSPNVYTF-TIL----------INALCKENRLNDARRFLKQL---------KW- 465 (595)
Q Consensus 421 A~~l~~--------------~m~~~~~~p~~~~~-~~l----------l~~~~~~g~~~~A~~~~~~~---------~~- 465 (595)
....+. .+.... .-|.... ..+ +.++...|.+..+.+++-++ .+
T Consensus 1537 ~e~~l~~~n~e~w~~~~~g~~ll~~~-~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1537 LESYLSDRNIEYWSVESIGKLLLRNK-KKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred hhhhhhcccccchhHHHHHHHHHhhc-ccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443322 000000 0011111 110 11111111111221111111 00
Q ss_pred -CCCCCC------HhhHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007626 466 -NDLVPK------PFMYNPVIDGFCKAGNVDEANVIVAE-MEEKRCKP-----DKVTFTILIIGHCMKGRMVEAISIFNK 532 (595)
Q Consensus 466 -~~~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (595)
.+..++ ..-|..-+..-....+..+-+--+++ +......| -..+|-.........|+++.|...+-.
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~ 1695 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLN 1695 (2382)
T ss_pred hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 011111 11111111111111111111111111 11111122 245677777777789999999988877
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007626 533 MLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 533 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+.+.+ -+..+.-.++-++..|+...|..++++.++...
T Consensus 1696 A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1696 AKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 76654 344555677789999999999999999986543
No 478
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.53 E-value=5.9e+02 Score=23.55 Aligned_cols=172 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 007626 173 DSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEY 252 (595)
Q Consensus 173 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (595)
.+...+++.+...+ ..+..-...+.-.+...+........-+-....++++....+..-.-.+-+ +++++|.+.+
T Consensus 27 ~~L~~Ll~~i~~~~-~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~-~~~~~A~~~L--- 101 (226)
T PF13934_consen 27 NDLRALLDLILSSN-VSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYIKFIQGFWLLDH-GDFEEALELL--- 101 (226)
T ss_pred HHHHHHHHHHhcCC-cCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHHHHHHHHHHhCh-HhHHHHHHHh---
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH
Q 007626 253 FRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 332 (595)
..+.....--.-++.++...|+.+.|+.+++.+. ....+......++.. ...+.+.+|+.+-+......+..--.
T Consensus 102 --~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~--p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e 176 (226)
T PF13934_consen 102 --SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG--PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFE 176 (226)
T ss_pred --CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC--CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHH
Q ss_pred hhHHHHHHHHHhcCChhHHHHH
Q 007626 333 VTYTSVISGYCKLGKMDKATGI 354 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l 354 (595)
.....++...++.+..++-..+
T Consensus 177 ~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 177 QLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHhhhhhHHHHHHhC
No 479
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=23.38 E-value=7.2e+02 Score=24.47 Aligned_cols=58 Identities=2% Similarity=0.093 Sum_probs=33.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007626 305 GLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCG 362 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g 362 (595)
+-.+.|+..+|.+.|+++.+..++..-......|+.++....-+.+...++.+..+..
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3345688888888888876554211111233456666666666666666665555443
No 480
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.16 E-value=3.3e+02 Score=21.49 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 007626 547 SLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~ 567 (595)
.|.-.|.+.|+.+.|.+-|+.
T Consensus 77 hLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHH
Confidence 344444444444444444443
No 481
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=23.10 E-value=1.1e+03 Score=26.47 Aligned_cols=166 Identities=15% Similarity=0.040 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcC
Q 007626 382 NMVSAEYMRERMLS--------FGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL--SPNVYTFTILINALCKEN 451 (595)
Q Consensus 382 ~~~~A~~~~~~m~~--------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~ll~~~~~~g 451 (595)
+.++...+++...+ .++..+......++... .|+..+++.+++.+..... ..+... =
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------I 235 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------I 235 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------c
Confidence 34556666666554 23445566666666543 7888888888887643210 000000 0
Q ss_pred CHHHHHHHHHHHH---hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----H
Q 007626 452 RLNDARRFLKQLK---WNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR-----M 523 (595)
Q Consensus 452 ~~~~A~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~ 523 (595)
..+.+.+.+.... ...-.++......++.++ +.++.+.|+.++.+|.+.|..|....-..++.+.-..|. .
T Consensus 236 t~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al 314 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQAL 314 (725)
T ss_pred cHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHH
Confidence 1122223332211 111112333334444433 457899999999999999888766655555555545553 2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007626 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 561 (595)
.-|...++-....|++--........-.++.+-+-..+
T Consensus 315 ~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~ 352 (725)
T PRK13341 315 VVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV 352 (725)
T ss_pred HHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH
Confidence 23444444455567554444444444444444443333
No 482
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.90 E-value=7e+02 Score=24.13 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007626 303 ISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
+..+.+..+.....+.+..+.. +..-...+..+...|++..|++++.+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3334444444444444444431 23334445555566677777666666544
No 483
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.68 E-value=3.6e+02 Score=20.65 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=18.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 007626 177 VVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF 217 (595)
Q Consensus 177 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 217 (595)
++|+-....|+..|+..|..++..+.-.=.++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444555555555554444443333333334444433
No 484
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=22.56 E-value=7.4e+02 Score=25.41 Aligned_cols=121 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHH
Q 007626 458 RFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM------KGRMVEAISIFN 531 (595)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~------~g~~~~A~~~~~ 531 (595)
+++..+.+..+.||...+.-+...|.+.=-+|-|.++|+-....| +...+.+.+..+-- .-++....+++.
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdg---eeFlfr~~lgIlklyepkLl~mDf~~~~qfLt 536 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG---EEFLFRTALGILKLYEPKLLVMDFIHVAQFLT 536 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecc---hHHHHHHHHHHHHHccchHhhhhHHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccc
Q 007626 532 KMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKK 581 (595)
Q Consensus 532 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 581 (595)
+.-..=-+-+......-+....+..++.+...-+++=+..++...|.+..
T Consensus 537 klp~dL~~eelF~~i~~~~~~sr~kkwsqvf~~i~kd~~eg~k~sp~l~h 586 (586)
T KOG2223|consen 537 KLPEDLTPEELFMHIAYIQMQSRSKKWSQVFQEIDKDVNEGGKTSPQLTH 586 (586)
T ss_pred hCcccCCHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccCCCCcccCC
No 485
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=22.38 E-value=7.6e+02 Score=24.33 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=31.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007626 267 LIQGLSRIGEVKKAFEFFYDMGSFGCSPDI---VTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
|.-+..+.|+..+|.+.|+++.+. .|=. .....|+.++....-+.+...++-+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555678888888888777643 2211 123456666666555555555554443
No 486
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=22.15 E-value=1.1e+02 Score=20.12 Aligned_cols=41 Identities=10% Similarity=-0.117 Sum_probs=28.7
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007626 143 LEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMR 183 (595)
Q Consensus 143 ~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 183 (595)
.+|+.....+|.....+..+.+-+...+....++.+|+++.
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 35555666777777788888888888887777777777654
No 487
>PF15241 Cylicin_N: Cylicin N-terminus
Probab=22.03 E-value=78 Score=25.03 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=46.8
Q ss_pred ccccCCCCCcCCCcccccCCcccccccccccccccCCCcchhhhhhccCCccccchHHHHHHHHHhhcCCCCCCCCCccc
Q 007626 7 NDIPISKSKESNGYPQRRSNSIDFCGHKSEAAANGVGLPMTLLFFTVRPSRVRASTIAAIAHFHGLANGGSRPFDEKEVN 86 (595)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (595)
|+|||+.+++--| ||.||--.=-+|+-.|--.+. ++++++- +. .+.--++..-
T Consensus 10 N~ipvse~SkKsw------NQqhFaLtFPKPprPG~K~RS-------~PSelq~---tv-----------p~~d~~kl~e 62 (110)
T PF15241_consen 10 NYIPVSESSKKSW------NQQHFALTFPKPPRPGKKRRS-------RPSELQI---TV-----------PRHDKRKLEE 62 (110)
T ss_pred ceeehHHhhHHHh------hhhheeeccCCCCCCCCCCCC-------CchHhcc---cc-----------cccccccccc
Confidence 7899999998877 677886666666666554444 2233332 10 0000111123
Q ss_pred cccCChhHHHHHHHHHhhcCCCCch
Q 007626 87 YRCSNEFWFVKVVCTLLLRSSYLSD 111 (595)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (595)
...|..-|+.+.|..+..+++..-+
T Consensus 63 ~qKpa~~Wm~~SL~ki~erPS~yla 87 (110)
T PF15241_consen 63 DQKPAHLWMRHSLRKISERPSVYLA 87 (110)
T ss_pred ccCCcchHHHHHHHHHHhCchhhHH
Confidence 4555578999999988887764333
No 488
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.92 E-value=6.5e+02 Score=25.76 Aligned_cols=112 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHhhhCCCCC-----------CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH---------------HHHH
Q 007626 142 FLEFSRVNLSLN-----------HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS---------------PMIE 195 (595)
Q Consensus 142 ~~~~~~~~~~~~-----------~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---------------~~~~ 195 (595)
|-.|......-. |+++....+++.+-.--+-.+..+.++...+.+.+.+. .+..
T Consensus 47 fc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSli 126 (404)
T PF10255_consen 47 FCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLI 126 (404)
T ss_pred HHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHH
Q ss_pred HHHHHHHhcCChHHHHHHHHhcc-------CCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 007626 196 FFVSSCIRAGKCDAAKGLLSQFR-------PGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYF 253 (595)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (595)
.|++..+-.|++..|+++++.+. ..-....+.++--+.-+|.-.+++.+|.++|..++
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=21.57 E-value=1.1e+02 Score=22.41 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007626 520 KGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.|+.+.+.+++++..+.|++|.......+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455555556666555555555554444343333
No 490
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=21.15 E-value=1.2e+03 Score=27.71 Aligned_cols=152 Identities=11% Similarity=-0.006 Sum_probs=83.2
Q ss_pred HcCCHHHHHH------HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hCCCCCCHhhHHHHHH
Q 007626 414 RNGQLNQGLK------LCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK-------WNDLVPKPFMYNPVID 480 (595)
Q Consensus 414 ~~g~~~~A~~------l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~~~li~ 480 (595)
..|.+.++.+ ++......-.++....|..+...+-+.++.++|...-.... ..+..-+...|..+.-
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3445554544 55533333335556677777777888888888877654431 1122223445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHH
Q 007626 481 GFCKAGNVDEANVIVAEMEEK-----RC-KPDKV-TFTILIIGHCMKGRMVEAISIFNKMLRI-----GC--APDDITVN 546 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~--~p~~~~~~ 546 (595)
.....++...|...+.+.... |- .|... +++.+-..+...++++.|.++++.+.+. |. -.+..++.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 555666777777766665432 21 33333 3333333344457788888888777652 21 12344555
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 007626 547 SLISCLLKGGMPNEAFRIM 565 (595)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~ 565 (595)
.+...+...+++..|.+..
T Consensus 1104 ~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 5666666666665555443
No 491
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.50 E-value=1.1e+03 Score=25.45 Aligned_cols=60 Identities=8% Similarity=-0.021 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 007626 190 NSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFR 254 (595)
Q Consensus 190 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (595)
....|..|++.+. .=+.++-.++++++.. .. ...+..+++++...|-.....-+.+.+..
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 4445555555543 3344555566665543 11 45666677777777765555444444443
No 492
>PRK09462 fur ferric uptake regulator; Provisional
Probab=20.48 E-value=4.8e+02 Score=22.13 Aligned_cols=60 Identities=10% Similarity=-0.053 Sum_probs=32.1
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007626 462 QLKWNDLVPKPFMYNPVIDGFCKA-GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR 522 (595)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 522 (595)
.+.+.|+..+. --..++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 7 ~l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34445555433 233444444443 3455677777777766655555555445555555554
No 493
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=20.45 E-value=5e+02 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC
Q 007626 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN 190 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 190 (595)
+...++.+....---.+.++..++......|.
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~ 52 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQ 52 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcH
Confidence 44455555555555566666666665543333
No 494
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.36 E-value=6.4e+02 Score=22.75 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHH-HHHHcC--CHHHHHH
Q 007626 419 NQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN--DLVPKPFMYNPVID-GFCKAG--NVDEANV 493 (595)
Q Consensus 419 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~-~~~~~g--~~~~A~~ 493 (595)
++++++.+++... +..+......|++++|..-++.+.+. .++--...|..+.. +++..+ .+-+|..
T Consensus 20 EE~l~lsRei~r~---------s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVRL---------SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred HHHHHHHCCC-------CCCHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHH
Q 007626 494 IVAEMEEKRC-------KPDKVTFTILIIG----------HCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 494 l~~~m~~~g~-------~p~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~ 535 (595)
++.-..+.+. .|...-.+.+..+ ..+.|++++|.++++-|.+
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 495
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.19 E-value=2.1e+02 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.3
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007626 518 CMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (595)
-..|++++|+.+|...++
T Consensus 17 D~~gny~eA~~lY~~ale 34 (75)
T cd02680 17 DEKGNAEEAIELYTEAVE 34 (75)
T ss_pred hHhhhHHHHHHHHHHHHH
Confidence 468999999999988776
Done!