BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007628
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 28/257 (10%)
Query: 21 IDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP----STFRRLKL----------- 65
+D++ ++G I T+L + +I+SN+F G +P + + L L
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPD 287
Query: 66 --------LYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVP--SKLFDKDLDA 115
L +DLS N F G N F G +P + L + L
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 116 IFLNDNRFQFGIPENLGNSPVSVLVF---ANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172
+ L+ N F +PE+L N S+L +NN G +P TL E+ L N+ T
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
G +PP + L +SFN+L G++PSS+G++ L L + N G IP + +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 233 LQNFTYSFNYFTGEPPS 249
L+ FN TGE PS
Sbjct: 468 LETLILDFNDLTGEIPS 484
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 7/246 (2%)
Query: 10 FNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYE 68
F S + + +DL+ G +PP G + L ++SN F G +P T +++ L
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 69 VDLSNNRFVGXX-XXXXXXXXXXXXXXXRFNEFEGSVPSKLFDK---DLDAIFLNDNRFQ 124
+DLS N F G N F G + L L ++L +N F
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 125 FGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLK 183
IP L N S + L + N L G IP S+G + K L ++ L + L G +P ++ +K
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVK 466
Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
L + FN L G +PS + N +L +++++NR TG IP + +L NL S N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 244 TGEPPS 249
+G P+
Sbjct: 527 SGNIPA 532
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 10/237 (4%)
Query: 15 LRVVASIDLNHADIAGYLPPEIGRLT-DLAIFHINSNRFCG-VVPSTFRRLK-LLYEVDL 71
+R + +DL+ + +G LP + L+ L ++SN F G ++P+ + K L E+ L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 72 SNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPEN 130
NN F G FN G++PS L L + L N + IP+
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 131 LGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
L + L+ NDL G IP + LN I L N+ LTG +P IG L+NL +
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 190 VSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246
+S N G++P+ +G+ +SL L++ N F G IP+++ + Q+ + N+ G+
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGK 573
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 49/258 (18%)
Query: 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN 74
++ + ++ L+ D+ G +P + T+L +++NR G +P RL+ L + LSNN
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 75 RFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQF------- 125
F G N F G++P+ +F + + A F+ R+ +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 126 -------------GI------------PENL--------------GNSPVSVLVFANNDL 146
GI P N+ N + L + N L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 147 GGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNM 206
G IP IG M L + L +++++G +P ++G L+ L + D+S N L G +P ++ +
Sbjct: 645 SGYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 207 KSLEQLNVAHNRFTGVIP 224
L ++++++N +G IP
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF 236
P +G L D+S N L G +I L+ LN++ N+F G IP L +LQ
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 237 TYSFNYFTGEPP 248
+ + N FTGE P
Sbjct: 275 SLAENKFTGEIP 286
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 112 DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN--- 168
+L+ + ++ N F GIP S + L + N L G +I T E+ L+N
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI----STCTELKLLNISS 256
Query: 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSV 227
+ G +PP LK+L ++ N G +P + G +L L+++ N F G +P
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 228 CQLPNLQNFTYSFNYFTGEPP 248
L++ S N F+GE P
Sbjct: 315 GSCSLLESLALSSNNFSGELP 335
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 112/261 (42%), Gaps = 28/261 (10%)
Query: 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP----STFRRLKL------- 65
+ +D++ ++G I T+L + +I+SN+F G +P + + L L
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 280
Query: 66 ------------LYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVP--SKLFDK 111
L +DLS N F G N F G +P + L +
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 112 DLDAIFLNDNRFQFGIPENLGNSPVSVLVF---ANNDLGGCIPGSIGKMGKTLNEIILMN 168
L + L+ N F +PE+L N S+L +NN G +P TL E+ L N
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVC 228
+ TG +PP + L +SFN+L G++PSS+G++ L L + N G IP +
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 229 QLPNLQNFTYSFNYFTGEPPS 249
+ L+ FN TGE PS
Sbjct: 461 YVKTLETLILDFNDLTGEIPS 481
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 7/246 (2%)
Query: 10 FNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYE 68
F S + + +DL+ G +PP G + L ++SN F G +P T +++ L
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 69 VDLSNNRFVGXX-XXXXXXXXXXXXXXXRFNEFEGSVPSKLFDK---DLDAIFLNDNRFQ 124
+DLS N F G N F G + L L ++L +N F
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 125 FGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLK 183
IP L N S + L + N L G IP S+G + K L ++ L + L G +P ++ +K
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVK 463
Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
L + FN L G +PS + N +L +++++NR TG IP + +L NL S N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 244 TGEPPS 249
+G P+
Sbjct: 524 SGNIPA 529
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 10/237 (4%)
Query: 15 LRVVASIDLNHADIAGYLPPEIGRLT-DLAIFHINSNRFCG-VVPSTFRRLK-LLYEVDL 71
+R + +DL+ + +G LP + L+ L ++SN F G ++P+ + K L E+ L
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 72 SNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPEN 130
NN F G FN G++PS L L + L N + IP+
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 131 LGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
L + L+ NDL G IP + LN I L N+ LTG +P IG L+NL +
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 190 VSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246
+S N G++P+ +G+ +SL L++ N F G IP+++ + Q+ + N+ G+
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGK 570
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 49/258 (18%)
Query: 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN 74
++ + ++ L+ D+ G +P + T+L +++NR G +P RL+ L + LSNN
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 75 RFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQF------- 125
F G N F G++P+ +F + + A F+ R+ +
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 581
Query: 126 -------------GI------------PENL--------------GNSPVSVLVFANNDL 146
GI P N+ N + L + N L
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 147 GGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNM 206
G IP IG M L + L +++++G +P ++G L+ L + D+S N L G +P ++ +
Sbjct: 642 SGYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 207 KSLEQLNVAHNRFTGVIP 224
L ++++++N +G IP
Sbjct: 701 TMLTEIDLSNNNLSGPIP 718
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF 236
P +G L D+S N L G +I L+ LN++ N+F G IP L +LQ
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 237 TYSFNYFTGEPP 248
+ + N FTGE P
Sbjct: 272 SLAENKFTGEIP 283
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 112 DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN--- 168
+L+ + ++ N F GIP S + L + N L G +I T E+ L+N
Sbjct: 198 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI----STCTELKLLNISS 253
Query: 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSV 227
+ G +PP LK+L ++ N G +P + G +L L+++ N F G +P
Sbjct: 254 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 228 CQLPNLQNFTYSFNYFTGEPP 248
L++ S N F+GE P
Sbjct: 312 GSCSLLESLALSSNNFSGELP 332
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 13/232 (5%)
Query: 27 DIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGXXXXXXXX 86
++ G +PP I +LT L +I G +P ++K L +D S N G
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 87 XXXXXXXXXRFNEFEGSVPSKL--FDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANN 144
N G++P F K ++ ++ NR IP N ++ + + N
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 145 DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIG 204
L G G K +I L ++L L ++G+ KNL D+ N + G+LP +
Sbjct: 208 MLEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 205 NMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF---TYSFNY-FTGEP-PSCT 251
+K L LNV+ N G IP Q NLQ F Y+ N G P P+CT
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNKCLCGSPLPACT 313
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 31/207 (14%)
Query: 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRL-KLLYEVDLSN 73
++ + ++D ++ ++G LPP I L +L + NR G +P ++ KL + +S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 74 NRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLF--DKDLDAIFLNDNRFQFGIPENL 131
NR G R N EG S LF DK+ I L N F +
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSR-NMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDL---- 237
Query: 132 GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVS 191
G +G + K LN + L N+ + G LP + LK L +VS
Sbjct: 238 --------------------GKVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 192 FNHLQGSLPSSIGNMKSLEQLNVAHNR 218
FN+L G +P GN++ + A+N+
Sbjct: 277 FNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 127 IPENLGNSPVSVLVFAN--NDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKN 184
IP +L N P ++ N+L G IP +I K+ + L+ + + + N++G +P + +K
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKT 126
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNL-QNFTYSFNYF 243
L D S+N L G+LP SI ++ +L + NR +G IP S L + T S N
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 244 TGEPP 248
TG+ P
Sbjct: 187 TGKIP 191
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ 234
LP L+NLT D+S L+ P++ ++ SL+ LN++HN F + L +LQ
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 235 NFTYSFNY 242
YS N+
Sbjct: 546 VLDYSLNH 553
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 203 IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFN 241
IG++K+L++LNVAHN +P L NL++ S N
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ 234
LP L+NLT D+S L+ P++ ++ SL+ LN++HN F + L +LQ
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 235 NFTYSFNY 242
YS N+
Sbjct: 522 VLDYSLNH 529
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 203 IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFN 241
IG++K+L++LNVAHN +P L NL++ S N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ 234
LP L+NLT D+S L+ P++ ++ SL+ LN++HN F + L +LQ
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 235 NFTYSFNY 242
YS N+
Sbjct: 227 VLDYSLNH 234
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 166 LMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPS 225
++ D + CLPP+I V D+ N ++ S+P + +++L++LNVA N+ V
Sbjct: 410 ILTDTIFRCLPPRIK------VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG 462
Query: 226 SVCQLPNLQNFTYSFNYFTGEPPSCT 251
+L +LQ + P C+
Sbjct: 463 IFDRLTSLQKI-----WLHTNPWDCS 483
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 166 LMNDNLTG----CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG 221
L ++ LTG CLPP++ V D+ N + S+P + ++++L++LNVA N+
Sbjct: 435 LSSNMLTGSVFRCLPPKVK------VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS 487
Query: 222 VIPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251
V +L +LQ + + P CT
Sbjct: 488 VPDGVFDRLTSLQ-----YIWLHDNPWDCT 512
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 132 GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVS 191
N S++ ++N +L +P + K L+ L ++++ P I L L V +S
Sbjct: 29 SNELESMVDYSNRNLTH-VPKDLPPRTKALS---LSQNSISELRMPDISFLSELRVLRLS 84
Query: 192 FNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247
N ++ + LE L+V+HNR + S C + +L++ SFN F P
Sbjct: 85 HNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLP 137
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ 234
LP L+NLT D+S L+ P++ ++ SL+ LN+A N+ V +L +LQ
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 203 IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFN 241
IG++K+L++LNVAHN +P L NL++ S N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 165 ILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP 224
+ +N N LP +I L NL V D+S N L SLP+ +G+ L+ N T +P
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMVT-TLP 309
Query: 225 SSVCQLPNLQ 234
L NLQ
Sbjct: 310 WEFGNLCNLQ 319
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 15/80 (18%)
Query: 182 LKNLTVFDVSFN----------HLQG----SLPSSIGNMKSLEQLNVAHNRFTGVIPSSV 227
L NL +F++S N +L G LP+ I N+ +L L+++HNR T +P+ +
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 228 CQLPNLQNFTYSFNYFTGEP 247
L+ F + N T P
Sbjct: 290 GSCFQLKYFYFFDNMVTTLP 309
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
LTV DVSFN L ++ + L++L + N + P + P L+ + + N T
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 245 GEP 247
P
Sbjct: 162 ELP 164
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
LTV DVSFN L ++ + L++L + N + P + P L+ + + N T
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 245 GEP 247
P
Sbjct: 162 ELP 164
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
LTV DVSFN L ++ + L++L + N + P + P L+ + + N T
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 245 GEP 247
P
Sbjct: 162 ELP 164
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
LTV DVSFN L ++ + L++L + N + P + P L+ + + N T
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 245 GEP 247
P
Sbjct: 162 ELP 164
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 13/144 (9%)
Query: 112 DLDAIFLNDNRFQF---GIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN 168
+L + L N+ Q G+ + L N + LV N L G K+ L + L +
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTN--LKELVLVENQLQSLPDGVFDKL-TNLTYLNLAH 142
Query: 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSV 227
+ L L NLT D+S+N LQ SLP + + L+ L + N+ V
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
Query: 228 CQLPNLQNFTYSFNYFTGEPPSCT 251
+L +LQ + + P CT
Sbjct: 202 DRLTSLQ-----YIWLHDNPWDCT 220
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 38 RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRF 97
+LT+L ++ N+ + F +L L E+DLS N+
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 98 NEFEGSVPSKLFDK--DLDAIFLNDN 121
N+ + SVP +FD+ L I+L+DN
Sbjct: 191 NQLK-SVPDGVFDRLTSLQYIWLHDN 215
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 185 LTVFDVSFNHLQGSLP-SSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
LTV DVSFN L SLP ++ + L++L + N + P + P L+ + + N
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 244 TGEP 247
T P
Sbjct: 161 TELP 164
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
LTV DVSFN L ++ + L++L + N + P + P L+ + + N T
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 245 GEP 247
P
Sbjct: 163 ELP 165
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 185 LTVFDVSFNHLQGSLP-SSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
LTV DVSFN L SLP ++ + L++L + N + P + P L+ + + N
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 244 TGEP 247
T P
Sbjct: 161 TELP 164
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL-PNLQNFTYSFN 241
K L + +N L+G LP+ G+ L LN+A+N+ T IP++ C ++N +++ N
Sbjct: 330 KKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHN 387
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
LTV DVSFN L ++ + L++L + N + P + P L+ + + N T
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 245 GEP 247
P
Sbjct: 162 ELP 164
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
LTV DVSFN L ++ + L++L + N + P + P L+ + + N T
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 245 GEP 247
P
Sbjct: 162 ELP 164
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
LTV DVSFN L ++ + L++L + N + P + P L+ + + N T
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 245 GEP 247
P
Sbjct: 162 ELP 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 203 IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFN 241
IG++K+L++LNVAHN +P L NL++ S N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 203 IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFN 241
IG++K+L++LNVAHN +P L NL++ S N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 203 IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFN 241
IG++K+L++LNVAHN +P L NL++ S N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 203 IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFN 241
IG++K+L++LNVAHN +P L NL++ S N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 203 IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFN 241
IG++K+L++LNVAHN +P L NL++ S N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI--GNMKSLEQLNVAHNRFTGVIPSSVCQL 230
GCL L NL D+S N ++ S S+ N+ L+ LN++HN G+ + +
Sbjct: 341 GCLEK----LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKEC 396
Query: 231 PNLQNFTYSF 240
P L+ +F
Sbjct: 397 PQLELLDLAF 406
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSF 240
L+NL + L+ S P IG + +L++LNVAHN +P+ L NL + S+
Sbjct: 106 LENLVAVETKLASLE-SFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 241 NY 242
NY
Sbjct: 163 NY 164
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSF 240
L+NL + L+ S P IG + +L++LNVAHN +P+ L NL + S+
Sbjct: 101 LENLVAVETKLASLE-SFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 157
Query: 241 NY 242
NY
Sbjct: 158 NY 159
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ 234
+P ++ K+LT+ D+S N + S NM L L +++NR + P + L +L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 53 CGVVPSTFRRLKLLYEVDLSNN 74
CGV+PST R L L E+ LS+N
Sbjct: 98 CGVLPSTLRSLPTLRELHLSDN 119
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
Length = 174
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 23 LNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF 76
LN+ I P L +L + NSN+ + F +L L ++DL++N
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 25 HADIAGYLPP-EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN 74
H + Y+P +L I ++SN G+ + F L LL ++DLS+N
Sbjct: 39 HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 28/134 (20%)
Query: 129 ENLGNSPVSVLVFANNDLGGCIPGSIGKMGK--------------------------TLN 162
E LGNS + L ++N L PG +GK ++
Sbjct: 166 EFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQ 225
Query: 163 EIILMNDNLTGCLPPQIGMLK--NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT 220
+ L N+ L LK NLT D+S+N+L S + SL L++ +N
Sbjct: 226 NLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQ 285
Query: 221 GVIPSSVCQLPNLQ 234
+ P S L NL+
Sbjct: 286 RLSPRSFYGLSNLR 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,107,638
Number of Sequences: 62578
Number of extensions: 340198
Number of successful extensions: 813
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 134
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)