Query 007628
Match_columns 595
No_of_seqs 416 out of 2682
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 13:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.9E-30 8.4E-35 307.0 14.4 254 15-269 355-609 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.8E-29 2.1E-33 294.9 15.3 234 15-249 139-374 (968)
3 KOG4194 Membrane glycoprotein 99.9 5.1E-28 1.1E-32 256.1 1.7 237 14-251 195-436 (873)
4 KOG4194 Membrane glycoprotein 99.9 7.8E-28 1.7E-32 254.7 -0.1 234 16-251 125-385 (873)
5 KOG0444 Cytoskeletal regulator 99.9 8.2E-25 1.8E-29 232.8 1.0 225 11-242 98-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.8E-24 3.9E-29 230.3 -2.9 224 15-244 77-304 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 5.5E-24 1.2E-28 217.6 -5.9 231 11-250 63-294 (565)
8 KOG4237 Extracellular matrix p 99.8 8.4E-23 1.8E-27 208.8 -2.4 251 18-269 69-361 (498)
9 KOG0472 Leucine-rich repeat pr 99.8 8.3E-23 1.8E-27 209.0 -8.3 224 12-245 87-311 (565)
10 KOG0617 Ras suppressor protein 99.8 6.3E-21 1.4E-25 175.7 -1.5 185 36-249 29-217 (264)
11 KOG4237 Extracellular matrix p 99.8 1.9E-20 4.1E-25 191.7 0.6 222 20-246 50-313 (498)
12 KOG0618 Serine/threonine phosp 99.8 3.1E-21 6.7E-26 214.5 -5.7 223 13-243 238-488 (1081)
13 PLN03210 Resistant to P. syrin 99.8 1.4E-17 3.1E-22 201.5 18.5 224 15-245 610-884 (1153)
14 PRK15370 E3 ubiquitin-protein 99.7 2.3E-18 5.1E-23 197.2 10.5 204 17-246 179-382 (754)
15 PRK15387 E3 ubiquitin-protein 99.7 3.6E-18 7.9E-23 194.8 12.0 210 17-251 223-465 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 1.6E-17 3.6E-22 190.2 17.3 205 16-246 199-403 (754)
17 cd00116 LRR_RI Leucine-rich re 99.7 3.7E-20 8E-25 192.7 -5.1 233 13-246 20-293 (319)
18 KOG0618 Serine/threonine phosp 99.7 1.5E-19 3.3E-24 201.2 -2.6 221 13-241 261-510 (1081)
19 KOG0617 Ras suppressor protein 99.7 1.9E-19 4.2E-24 165.9 -3.1 163 60-251 29-193 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-19 6.1E-24 186.1 -2.7 229 14-243 49-319 (319)
21 PLN03210 Resistant to P. syrin 99.7 2.2E-16 4.7E-21 191.3 17.9 215 18-242 591-836 (1153)
22 PRK15387 E3 ubiquitin-protein 99.7 2.9E-16 6.3E-21 179.3 15.1 114 18-148 203-316 (788)
23 KOG0532 Leucine-rich repeat (L 99.6 1.1E-17 2.4E-22 178.1 -2.6 178 38-247 73-250 (722)
24 KOG0532 Leucine-rich repeat (L 99.5 4.9E-16 1.1E-20 165.7 -0.9 174 14-220 73-247 (722)
25 COG4886 Leucine-rich repeat (L 99.5 4.1E-14 8.8E-19 152.5 8.5 196 44-248 97-294 (394)
26 PLN03150 hypothetical protein; 99.5 1.6E-13 3.4E-18 156.2 11.4 123 1-125 405-529 (623)
27 COG4886 Leucine-rich repeat (L 99.4 2.4E-13 5.2E-18 146.5 6.7 200 20-229 97-299 (394)
28 KOG3207 Beta-tubulin folding c 99.4 2.9E-14 6.4E-19 148.3 -0.4 209 37-246 118-341 (505)
29 KOG1909 Ran GTPase-activating 99.4 1.1E-14 2.3E-19 148.0 -4.1 229 14-244 28-311 (382)
30 KOG0531 Protein phosphatase 1, 99.4 9.3E-14 2E-18 151.0 -0.4 128 15-147 71-199 (414)
31 KOG0531 Protein phosphatase 1, 99.3 1.8E-13 3.9E-18 148.7 -0.4 219 17-246 50-270 (414)
32 KOG3207 Beta-tubulin folding c 99.3 8.2E-13 1.8E-17 137.7 1.5 186 61-247 118-317 (505)
33 KOG1909 Ran GTPase-activating 99.3 1.6E-13 3.6E-18 139.5 -4.2 223 23-246 13-285 (382)
34 PLN03150 hypothetical protein; 99.3 4.5E-12 9.8E-17 144.3 6.5 109 136-245 420-529 (623)
35 KOG1259 Nischarin, modulator o 99.2 6.2E-13 1.3E-17 132.6 -1.2 130 112-248 285-416 (490)
36 KOG1259 Nischarin, modulator o 99.2 2.1E-12 4.6E-17 128.8 -1.7 132 86-223 282-415 (490)
37 KOG4658 Apoptotic ATPase [Sign 99.2 2.3E-11 5.1E-16 142.0 6.1 177 16-196 545-730 (889)
38 PF14580 LRR_9: Leucine-rich r 99.1 1.9E-11 4E-16 116.6 2.3 74 22-101 3-77 (175)
39 COG5238 RNA1 Ran GTPase-activa 99.1 2.5E-12 5.4E-17 126.9 -5.3 86 16-101 30-133 (388)
40 KOG1859 Leucine-rich repeat pr 99.0 4.2E-12 9.1E-17 138.9 -7.2 157 81-246 102-269 (1096)
41 KOG1859 Leucine-rich repeat pr 99.0 3.2E-12 6.9E-17 139.8 -10.3 107 136-248 189-296 (1096)
42 COG5238 RNA1 Ran GTPase-activa 99.0 4.1E-11 8.9E-16 118.3 -2.1 221 27-248 18-289 (388)
43 KOG2982 Uncharacterized conser 99.0 2.9E-10 6.2E-15 113.8 3.5 90 12-101 41-134 (418)
44 PF14580 LRR_9: Leucine-rich r 98.9 7.5E-10 1.6E-14 105.7 5.1 83 15-101 18-101 (175)
45 KOG2120 SCF ubiquitin ligase, 98.9 1.4E-11 3E-16 123.0 -9.4 86 18-103 187-275 (419)
46 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 85.7 3.0 60 41-100 2-61 (61)
47 PF13855 LRR_8: Leucine rich r 98.8 2.6E-09 5.6E-14 83.9 3.9 61 183-243 1-61 (61)
48 KOG4658 Apoptotic ATPase [Sign 98.8 6.1E-09 1.3E-13 122.0 7.6 229 12-242 567-830 (889)
49 KOG2120 SCF ubiquitin ligase, 98.8 8.5E-11 1.8E-15 117.5 -6.8 223 15-242 135-374 (419)
50 KOG2982 Uncharacterized conser 98.7 1.1E-09 2.5E-14 109.5 -2.2 183 14-196 69-262 (418)
51 KOG4579 Leucine-rich repeat (L 98.5 2.1E-08 4.6E-13 90.2 -0.6 132 16-149 27-161 (177)
52 KOG4579 Leucine-rich repeat (L 98.4 2.5E-08 5.3E-13 89.8 -1.5 106 38-146 25-135 (177)
53 PRK15386 type III secretion pr 98.4 1.9E-06 4.2E-11 92.0 10.5 32 183-217 156-187 (426)
54 KOG1644 U2-associated snRNP A' 98.2 1.7E-06 3.6E-11 82.9 5.4 82 41-124 43-126 (233)
55 KOG1644 U2-associated snRNP A' 98.1 4.7E-06 1E-10 79.9 5.9 102 41-147 20-126 (233)
56 PRK15386 type III secretion pr 98.0 6.1E-06 1.3E-10 88.2 5.8 135 36-193 48-187 (426)
57 KOG3665 ZYG-1-like serine/thre 98.0 1E-06 2.2E-11 101.1 -0.6 133 88-223 122-266 (699)
58 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 58.1 3.9 36 65-101 2-37 (44)
59 KOG3665 ZYG-1-like serine/thre 97.8 7.4E-07 1.6E-11 102.2 -5.8 139 111-251 122-270 (699)
60 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6E-10 56.8 3.8 36 184-220 2-37 (44)
61 KOG4308 LRR-containing protein 97.8 1.4E-07 3E-12 103.8 -12.5 180 42-221 89-304 (478)
62 KOG4341 F-box protein containi 97.6 1.4E-06 3E-11 91.4 -6.7 228 17-244 139-385 (483)
63 KOG2739 Leucine-rich acidic nu 97.6 2.2E-05 4.7E-10 78.2 1.1 68 32-101 35-104 (260)
64 PF13306 LRR_5: Leucine rich r 97.5 0.00014 3E-09 65.1 5.8 83 13-98 9-91 (129)
65 PF13306 LRR_5: Leucine rich r 97.5 0.00017 3.7E-09 64.6 6.3 84 34-121 6-91 (129)
66 KOG2123 Uncharacterized conser 97.4 7.9E-06 1.7E-10 81.8 -4.0 101 13-117 16-123 (388)
67 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.3E-09 72.3 2.9 102 134-238 43-150 (260)
68 KOG2123 Uncharacterized conser 97.2 2.2E-05 4.7E-10 78.7 -3.6 60 38-101 17-76 (388)
69 KOG4341 F-box protein containi 97.1 2.8E-05 6.2E-10 81.7 -4.6 228 14-241 162-436 (483)
70 KOG1947 Leucine rich repeat pr 97.1 9.1E-05 2E-09 81.3 -1.0 61 39-99 187-254 (482)
71 KOG4308 LRR-containing protein 97.0 2.8E-06 6E-11 93.6 -13.4 181 66-246 89-305 (478)
72 KOG1947 Leucine rich repeat pr 97.0 7.5E-05 1.6E-09 82.0 -3.2 108 16-123 188-307 (482)
73 KOG0473 Leucine-rich repeat pr 96.7 5.5E-05 1.2E-09 74.1 -5.7 46 150-197 80-125 (326)
74 KOG4242 Predicted myosin-I-bin 96.7 0.0026 5.6E-08 68.2 5.7 87 159-245 354-454 (553)
75 KOG0473 Leucine-rich repeat pr 96.4 0.0001 2.2E-09 72.2 -6.3 84 15-101 41-124 (326)
76 KOG4242 Predicted myosin-I-bin 95.9 0.032 7E-07 60.1 8.8 65 184-248 355-430 (553)
77 PHA03247 large tegument protei 95.6 11 0.00025 48.9 36.4 9 185-193 2398-2406(3151)
78 PF00560 LRR_1: Leucine Rich R 95.1 0.0098 2.1E-07 36.6 0.9 19 185-204 2-20 (22)
79 PF00560 LRR_1: Leucine Rich R 94.7 0.014 3.1E-07 35.8 0.9 22 208-230 1-22 (22)
80 KOG3671 Actin regulatory prote 94.2 11 0.00023 41.4 21.9 17 86-102 75-91 (569)
81 KOG3864 Uncharacterized conser 94.0 0.0086 1.9E-07 57.9 -1.7 82 40-121 101-186 (221)
82 KOG1665 AFH1-interacting prote 93.7 0.03 6.6E-07 54.4 1.5 15 208-222 257-271 (302)
83 KOG1665 AFH1-interacting prote 92.9 0.056 1.2E-06 52.6 1.9 13 233-245 258-270 (302)
84 KOG3864 Uncharacterized conser 92.4 0.01 2.3E-07 57.3 -3.7 84 132-216 99-185 (221)
85 PRK15196 secreted effector pro 91.0 0.33 7.2E-06 51.7 5.3 7 213-219 298-304 (350)
86 smart00370 LRR Leucine-rich re 90.4 0.22 4.7E-06 31.6 2.0 19 88-107 2-20 (26)
87 smart00369 LRR_TYP Leucine-ric 90.4 0.22 4.7E-06 31.6 2.0 19 88-107 2-20 (26)
88 PF13504 LRR_7: Leucine rich r 89.8 0.2 4.3E-06 28.7 1.3 13 89-101 2-14 (17)
89 PRK09718 hypothetical protein; 89.2 0.64 1.4E-05 50.7 5.6 12 160-171 229-240 (512)
90 PF13504 LRR_7: Leucine rich r 89.1 0.21 4.6E-06 28.6 1.1 13 208-220 2-14 (17)
91 PRK09718 hypothetical protein; 88.1 1.1 2.3E-05 49.0 6.4 12 184-195 229-240 (512)
92 KOG3671 Actin regulatory prote 87.5 50 0.0011 36.4 21.7 18 60-77 73-90 (569)
93 KOG3763 mRNA export factor TAP 87.1 0.21 4.6E-06 55.1 0.4 65 61-125 215-284 (585)
94 smart00370 LRR Leucine-rich re 85.7 0.71 1.5E-05 29.2 2.2 17 63-79 1-17 (26)
95 smart00369 LRR_TYP Leucine-ric 85.7 0.71 1.5E-05 29.2 2.2 17 63-79 1-17 (26)
96 KOG3763 mRNA export factor TAP 82.5 0.63 1.4E-05 51.5 1.5 65 38-104 216-286 (585)
97 PRK15196 secreted effector pro 82.4 0.53 1.2E-05 50.1 0.9 28 23-51 85-112 (350)
98 PF13516 LRR_6: Leucine Rich r 82.2 0.22 4.7E-06 31.0 -1.3 13 208-220 3-15 (24)
99 smart00365 LRR_SD22 Leucine-ri 80.0 1.4 3E-05 28.3 1.8 15 87-101 1-15 (26)
100 PF13516 LRR_6: Leucine Rich r 78.7 0.34 7.3E-06 30.1 -1.3 13 65-77 3-15 (24)
101 smart00365 LRR_SD22 Leucine-ri 75.9 2 4.4E-05 27.6 1.7 15 63-77 1-15 (26)
102 TIGR00864 PCC polycystin catio 73.2 2.7 5.9E-05 54.8 3.4 32 46-77 1-32 (2740)
103 smart00368 LRR_RI Leucine rich 72.5 2.8 6.1E-05 27.2 1.8 14 88-101 2-15 (28)
104 PRK15377 E3 ubiquitin-protein 68.5 3.3 7.2E-05 47.8 2.4 11 185-195 314-324 (782)
105 TIGR00864 PCC polycystin catio 67.4 3.8 8.2E-05 53.6 2.9 32 165-196 1-32 (2740)
106 smart00364 LRR_BAC Leucine-ric 62.9 4.6 9.9E-05 26.0 1.2 12 185-196 4-15 (26)
107 PRK15377 E3 ubiquitin-protein 60.2 11 0.00025 43.6 4.7 8 162-169 344-351 (782)
108 PRK15197 secreted effector pro 58.2 17 0.00038 37.6 5.2 8 164-171 265-272 (291)
109 PF04554 Extensin_2: Extensin- 56.5 39 0.00084 26.0 5.4 10 552-561 30-39 (58)
110 PRK15197 secreted effector pro 55.7 7.9 0.00017 40.1 2.3 54 184-244 220-273 (291)
111 PF13229 Beta_helix: Right han 41.8 5.2 0.00011 36.2 -1.5 9 188-196 102-110 (158)
112 COG3420 NosD Nitrous oxidase a 36.5 29 0.00062 36.5 2.8 6 280-285 326-331 (408)
113 PF12541 DUF3737: Protein of u 31.9 12 0.00025 38.0 -0.8 28 188-220 196-223 (277)
114 PF04554 Extensin_2: Extensin- 27.6 1.2E+02 0.0026 23.4 4.1 9 582-590 50-58 (58)
115 COG3204 Uncharacterized protei 26.9 47 0.001 34.4 2.4 203 31-254 76-290 (316)
116 smart00367 LRR_CC Leucine-rich 24.8 47 0.001 20.8 1.3 13 87-99 1-13 (26)
117 PF13229 Beta_helix: Right han 24.4 8.8 0.00019 34.7 -3.1 9 45-53 34-42 (158)
118 KOG3735 Tropomodulin and leiom 21.1 17 0.00037 38.1 -2.0 67 38-104 196-271 (353)
119 TIGR03808 RR_plus_rpt_1 twin-a 20.6 29 0.00063 38.0 -0.4 10 139-148 191-200 (455)
120 KOG3735 Tropomodulin and leiom 20.1 18 0.00039 38.0 -2.0 64 183-246 198-270 (353)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.9e-30 Score=306.96 Aligned_cols=254 Identities=27% Similarity=0.499 Sum_probs=199.6
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
+.+|+.|+|++|++.+.++..+..+.+|+.|+|++|++.+.++.+|+++.+|+.|+|++|+|++.++..|.++.+|++||
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 34444444544444444444444455555555555555555566666677777777777777777777777777778888
Q ss_pred ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628 95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g 173 (595)
|++|+|+|.++..+.. .+|+.|+|++|++.+.++..+...+|++|+|++|++.+.++..|..+ .+|++|+|++|++.+
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL-SELMQLKLSENKLSG 513 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhh-hccCEEECcCCccee
Confidence 8888877777665544 67888888888888888888877889999999999999999988888 789999999999999
Q ss_pred CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc
Q 007628 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA 253 (595)
Q Consensus 174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~ 253 (595)
.+++.|++|.+|++|+|++|.|+|.++..|+.|.+|++|||++|+|+|.++..+.++.+|+.|||++|+|+|.++.....
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876555
Q ss_pred cCCCCcccccCCCCCC
Q 007628 254 AGGGGRMMAARPADCS 269 (595)
Q Consensus 254 ~~~~~~~~~~~~~~c~ 269 (595)
.......+.+|...|+
T Consensus 594 ~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 594 LAINASAVAGNIDLCG 609 (968)
T ss_pred cccChhhhcCCccccC
Confidence 5444455566665654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=9.8e-29 Score=294.91 Aligned_cols=234 Identities=28% Similarity=0.508 Sum_probs=145.0
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
+.+|++|||++|++.+.++..|+++.+|++|+|++|.+.+.++..|++|.+|++|+|++|++.+.++..|.+|.+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 44455555555555555555566666666666666666666666666666666666666666666666666666666666
Q ss_pred ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
|++|++.+.++..+.. .+|++|+|++|++.+.++..+.. .+|++|+|++|++.+.++.+++++ .+|++|+|++|++.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc-cCcCEEECcCCeec
Confidence 6666666555555444 55666666666666555554443 456666666666666666666655 56666666666666
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCc
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~ 249 (595)
+.++..|.++.+|++|+|++|.+++.++..|+.+.+|++|+|++|++++.++..++.+.+|+.|+|++|++++.++.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666665544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=5.1e-28 Score=256.12 Aligned_cols=237 Identities=21% Similarity=0.239 Sum_probs=174.2
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
+|++|.+|+|++|.|+.+-...|.+|.+|+.|||..|+|.-+.-..|.+|.+|+.|.|.+|+|...-.+.|..|.++++|
T Consensus 195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence 44445555555555554444444445555555555555543333445555555555555555555556677778888888
Q ss_pred EccCCCCCCCCCccccc-cCCCeeeccCCccccCCCccc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628 94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL 171 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l 171 (595)
+|+.|+++..-..++|. ..|+.|+|+.|.++-.-.+.+ +..+|++|+|++|+|+..-.++|..+ ..|++|+|++|.+
T Consensus 275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSI 353 (873)
T ss_pred ecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccch
Confidence 88888888555556665 788888888888875444443 44679999999999998777888777 8999999999999
Q ss_pred CCCCCCccCCCccceEEeccCccccCCCCC---CcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPS---SIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~---~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
...--.+|..|++|++|||++|.|++++.+ .|..|.+|+.|+|.+|+|...--.+|.+|.+|+.|||.+|-|...-.
T Consensus 354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence 987778899999999999999999988876 47789999999999999996666899999999999999998876554
Q ss_pred ccc
Q 007628 249 SCT 251 (595)
Q Consensus 249 ~~~ 251 (595)
..+
T Consensus 434 nAF 436 (873)
T KOG4194|consen 434 NAF 436 (873)
T ss_pred ccc
Confidence 433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=7.8e-28 Score=254.72 Aligned_cols=234 Identities=20% Similarity=0.227 Sum_probs=164.9
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+|+.|+|.+|.|+.+..+++..+..|+.|||+.|.|+.+--.+|-.-.+|++|+|++|+|+.+.-+.|.+|.+|.+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 34666666666666655555555555555555555555444444444445555555555555444444555555555555
Q ss_pred cCCCCCCCCCccccc--cCCCeeecc------------------------CCccccCC-CcccCCCCceeEEeeccCCCC
Q 007628 96 RFNEFEGSVPSKLFD--KDLDAIFLN------------------------DNRFQFGI-PENLGNSPVSVLVFANNDLGG 148 (595)
Q Consensus 96 s~N~l~g~ip~~l~~--~~L~~L~L~------------------------~N~l~~~~-p~~l~~~~L~~L~L~~N~l~~ 148 (595)
++|+|+ .++...|. .+|+.|+|. .|++...- ..++++.++++|+|..|++..
T Consensus 205 srNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 205 SRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred ccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 555554 33333333 344444444 44443221 123345688999999999998
Q ss_pred CcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhcc
Q 007628 149 CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVC 228 (595)
Q Consensus 149 ~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~ 228 (595)
.-.++++.+ ..|++|+|++|.|..+..+.|..+.+|++|||++|+|+....+.|..|..|++|+|++|+|+......|.
T Consensus 284 vn~g~lfgL-t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 284 VNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhccccccc-chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 888999998 8999999999999999899999999999999999999988888899999999999999999877778899
Q ss_pred CCCCCcEEEcccccCCCCCCccc
Q 007628 229 QLPNLQNFTYSFNYFTGEPPSCT 251 (595)
Q Consensus 229 ~l~~L~~L~Ls~N~Lsg~~p~~~ 251 (595)
++.+|++|||++|.|++.|.+..
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecch
Confidence 99999999999999998887643
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=8.2e-25 Score=232.81 Aligned_cols=225 Identities=25% Similarity=0.390 Sum_probs=143.4
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
++=+|..|.+|||++|+++. .+..+.+.+++-+|+|++|+|..+--..|.+|++|-+|||++|+|. .++-.+..|.+|
T Consensus 98 diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML 175 (1255)
T ss_pred hhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence 34457778888888888875 6777888888888888888888665566777888888888888776 445555555555
Q ss_pred CEEEccCCC-------------------------------------------------CCCCCCccccc-cCCCeeeccC
Q 007628 91 KYLDLRFNE-------------------------------------------------FEGSVPSKLFD-KDLDAIFLND 120 (595)
Q Consensus 91 ~~LdLs~N~-------------------------------------------------l~g~ip~~l~~-~~L~~L~L~~ 120 (595)
++|+|++|- |. .+++.++. .+|+.|+|++
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence 555555554 33 33333333 3444555555
Q ss_pred CccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC-CCCCCccCCCccceEEeccCccccCCC
Q 007628 121 NRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT-GCLPPQIGMLKNLTVFDVSFNHLQGSL 199 (595)
Q Consensus 121 N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~-g~ip~~~~~L~~L~~LdLs~N~L~g~l 199 (595)
|+++...-..-...+|+.|+|+.|+++ .+++.++++ ..|+.|.+.+|++. .-|+..|++|.+|+++.+++|.|. .+
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lV 331 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LV 331 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cC
Confidence 554422211112234555666666655 456666666 56667777666655 235666777777777777777766 66
Q ss_pred CCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccccc
Q 007628 200 PSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY 242 (595)
Q Consensus 200 P~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~ 242 (595)
++.+++|.+|+.|.|++|+|. ++++.+.-|..|++|||.+|.
T Consensus 332 PEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 332 PEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred chhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 677777777777777777766 566777777777777777663
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.8e-24 Score=230.26 Aligned_cols=224 Identities=28% Similarity=0.424 Sum_probs=109.8
Q ss_pred CCceeEEEccCCCCCCC-CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 15 LRVVASIDLNHADIAGY-LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~-lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
|..|+.+++++|++... ++.+|.+|.+|.+|||++|+|. +.+..+.+..++-.|+|++|+|..+--..|.+|..|-+|
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 33444455555554322 4455555555555555555555 445555555555555555555553333344455555555
Q ss_pred EccCCCCCCCCCcccc-ccCCCeeeccCCcccc-CCCcccCCCCceeEEeeccC-CCCCcCcccccccchhhHHHhhccc
Q 007628 94 DLRFNEFEGSVPSKLF-DKDLDAIFLNDNRFQF-GIPENLGNSPVSVLVFANND-LGGCIPGSIGKMGKTLNEIILMNDN 170 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~-~~~L~~L~L~~N~l~~-~~p~~l~~~~L~~L~L~~N~-l~~~ip~~l~~l~~~L~~L~Ls~N~ 170 (595)
|||+|+|. .++..+- ...|+.|+|++|-+.. .+-..-....|++|.+++.+ -...++.+|..| .+|..++|+.|+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccC
Confidence 55555554 2222222 2445555555543321 11111111233344444322 223444555555 455555555555
Q ss_pred cCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628 171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 171 l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls 244 (595)
+. ++++.+.++.+|+.|+|++|.|+ ++...++...+|++|+|+.|+|+ .+++.+++|.+|+.|.+.+|.|+
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 55 55555555555666666666555 44444445555555555555555 45566666666666666666554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=5.5e-24 Score=217.56 Aligned_cols=231 Identities=21% Similarity=0.334 Sum_probs=184.0
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
|...|..+.+|++.+|++.. ++.+++++..++.|+.++|++. +++.+++.+.+|+.|++++|++. .+.+.|+.|..|
T Consensus 63 dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred hhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 34556667777777777765 5667777777777777777777 67777777778888888888877 566677777778
Q ss_pred CEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccc
Q 007628 91 KYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN 170 (595)
Q Consensus 91 ~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~ 170 (595)
+.||..+|+|.....+..+..+|..|++.+|++....+..+..+.|++|+..+|.++ .++.+++.| .+|+.|+|..|+
T Consensus 140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l-~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGL-ESLELLYLRRNK 217 (565)
T ss_pred hhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcch-hhhHHHHhhhcc
Confidence 888888888874333444447788888888888877677777778889999888886 788999988 889999999999
Q ss_pred cCCCCCCccCCCccceEEeccCccccCCCCCCcC-CCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCc
Q 007628 171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIG-NMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249 (595)
Q Consensus 171 l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~-~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~ 249 (595)
|. .++ +|.+|..|++|+++.|+|+ .++.+++ .|.+|.+|||.+|+|+ ++++.++.+.+|++|||++|.+++...+
T Consensus 218 i~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 218 IR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred cc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcc
Confidence 88 555 8899999999999999998 6666655 8999999999999998 7889999999999999999999987665
Q ss_pred c
Q 007628 250 C 250 (595)
Q Consensus 250 ~ 250 (595)
.
T Consensus 294 L 294 (565)
T KOG0472|consen 294 L 294 (565)
T ss_pred c
Confidence 3
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=8.4e-23 Score=208.77 Aligned_cols=251 Identities=20% Similarity=0.246 Sum_probs=166.5
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccC-CcCCCcCchhcCCCCCCCEEEcc
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSN-NRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~-N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
.+.|+|..|+|+.+-.++|..+++||.|||++|+|+.+-+++|..|.+|.+|.|.+ |+|+.+--+.|.+|..|+.|.|.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999998887666 99997777899999999999999
Q ss_pred CCCCCCCCCccccc--cCCCeeeccCCccccCCCccc-CCCCceeEEeeccCCC-CC-----------cC--ccccccc-
Q 007628 97 FNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFANNDLG-GC-----------IP--GSIGKMG- 158 (595)
Q Consensus 97 ~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~-~~-----------ip--~~l~~l~- 158 (595)
-|++. .+....+. .+|..|.|.+|.++......+ ....++.+.+..|.|. .+ .+ -+++.+.
T Consensus 149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 99988 45444444 678888888888774333222 2244455555444411 00 00 0001110
Q ss_pred ------------------chhhHH--Hhh-ccccCCCCC-CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628 159 ------------------KTLNEI--ILM-NDNLTGCLP-PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH 216 (595)
Q Consensus 159 ------------------~~L~~L--~Ls-~N~l~g~ip-~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~ 216 (595)
..++.+ .++ .+.+.++.+ ..|..|.+|++|+|++|+|++.-..+|.++..|++|+|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 011111 111 111222222 2366777777777777777777777777777777777777
Q ss_pred CcCCCCCchhccCCCCCcEEEcccccCCCCCCccccccC-CCCcccccCCCCCC
Q 007628 217 NRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAG-GGGRMMAARPADCS 269 (595)
Q Consensus 217 N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~-~~~~~~~~~~~~c~ 269 (595)
|+|..+--..|.++..|+.|+|.+|+|+..-+..+.... .....+..|++.|+
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 777766666777777777777777777765443332221 22233445555554
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=8.3e-23 Score=208.98 Aligned_cols=224 Identities=26% Similarity=0.379 Sum_probs=196.7
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~ 91 (595)
++++.+++.|+.++|++.. ++++++.+..|+.|++++|++. .+.++|++|.+|+.|+..+|+|+ .+++.+.+|.+|.
T Consensus 87 ig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~ 163 (565)
T KOG0472|consen 87 IGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLS 163 (565)
T ss_pred HHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHH
Confidence 3566778999999999986 7899999999999999999999 68889999999999999999999 7888999999999
Q ss_pred EEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628 92 YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL 171 (595)
Q Consensus 92 ~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l 171 (595)
.|++.+|+++...+..+....|++|++..|.++..-++..+...|+.|+|.+|+|.. ++ +|..+ ..|++|++..|.|
T Consensus 164 ~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gc-s~L~Elh~g~N~i 240 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-LP-EFPGC-SLLKELHVGENQI 240 (565)
T ss_pred HhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-CC-CCCcc-HHHHHHHhcccHH
Confidence 999999999955555555589999999999887544444455789999999999984 45 77777 7899999999998
Q ss_pred CCCCCCccC-CCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCC
Q 007628 172 TGCLPPQIG-MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 172 ~g~ip~~~~-~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg 245 (595)
. .++.+++ +|.+|.+|||++|+|+ +++++++.|++|+.|||++|.|+ .++..+++| +|+.|-|.+|-|..
T Consensus 241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred H-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH
Confidence 8 6666665 8999999999999999 89999999999999999999999 577899999 89999999998864
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=6.3e-21 Score=175.67 Aligned_cols=185 Identities=29% Similarity=0.504 Sum_probs=150.8
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCC
Q 007628 36 IGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLD 114 (595)
Q Consensus 36 ~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~ 114 (595)
+.++.+++.|.|++|+|+ .++..+++|.+|+.|+|.+|+|. .++..++.|.+|+.|+++.|++. .++..+.. ..|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 456778889999999999 66778999999999999999998 78889999999999999999987 55554433 4555
Q ss_pred eeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCcc
Q 007628 115 AIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNH 194 (595)
Q Consensus 115 ~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~ 194 (595)
.|||..|++. +..+++.|+.| ..|+.|+|++|.|. .++.++++|++|+.|.|.+|.
T Consensus 106 vldltynnl~----------------------e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 106 VLDLTYNNLN----------------------ENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhccccccc----------------------cccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 5555555443 23577888888 89999999999998 899999999999999999999
Q ss_pred ccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC---CCcEEEcccccCCCCCCc
Q 007628 195 LQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP---NLQNFTYSFNYFTGEPPS 249 (595)
Q Consensus 195 L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~---~L~~L~Ls~N~Lsg~~p~ 249 (595)
|. .++.+++.|.+|++|++++|+|+ .++..++++. +-+++.+.+|-+-..|.+
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 98 89999999999999999999998 6777776654 335566777776655544
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=1.9e-20 Score=191.68 Aligned_cols=222 Identities=18% Similarity=0.295 Sum_probs=166.3
Q ss_pred EEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc-CC
Q 007628 20 SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR-FN 98 (595)
Q Consensus 20 ~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs-~N 98 (595)
++|-++.+++. ++..+-. +..+|+|..|+|+.+-+.+|+.+.+|+.|||++|+|+.+-+++|..|.+|..|.|. +|
T Consensus 50 ~VdCr~~GL~e-VP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLTE-VPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCccc-CcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 45666666665 3444322 46789999999999888999999999999999999999999999999988777655 49
Q ss_pred CCCCCCCccccc--cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC---
Q 007628 99 EFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT--- 172 (595)
Q Consensus 99 ~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~--- 172 (595)
+|+ .++...|. ..|+.|.|+-|++.....+.|.. .++..|.+.+|.+..+--..|..+ ..++.|.+..|.+.
T Consensus 127 kI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l-~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 127 KIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL-AAIKTLHLAQNPFICDC 204 (498)
T ss_pred chh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch-hccchHhhhcCcccccc
Confidence 998 88888877 78999999999988766666544 567889999999885555566666 78999988888732
Q ss_pred ---------CCCCCccCCCccceEEecc-------------------------CccccCCCC-CCcCCCCCccEEEccCC
Q 007628 173 ---------GCLPPQIGMLKNLTVFDVS-------------------------FNHLQGSLP-SSIGNMKSLEQLNVAHN 217 (595)
Q Consensus 173 ---------g~ip~~~~~L~~L~~LdLs-------------------------~N~L~g~lP-~~l~~L~~L~~L~Ls~N 217 (595)
...+.+++.+..+.-..|. .+.+.+..+ ..|+.|.+|++|+|++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 1222233322211111111 112222222 24788999999999999
Q ss_pred cCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 218 RFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 218 ~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+|+++-..+|.++.+|++|.|..|+|...
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v 313 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFV 313 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHH
Confidence 99999999999999999999999988653
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=3.1e-21 Score=214.45 Aligned_cols=223 Identities=25% Similarity=0.398 Sum_probs=175.1
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
..-.+|+++|+++|++++ ++++++.+.+|+.|++++|+|+ .++..+..+++|+.|++.+|.+. .++..+.+++.|++
T Consensus 238 p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT 314 (1081)
T ss_pred cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence 444678999999999987 5688999999999999999996 67888888999999999999988 67778888999999
Q ss_pred EEccCCCCCCCCCccccc---------------------------cCCCeeeccCCccccCCCcccCC-CCceeEEeecc
Q 007628 93 LDLRFNEFEGSVPSKLFD---------------------------KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANN 144 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~---------------------------~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N 144 (595)
|||..|+|. .++..++. ..|+.|+|.+|.|+..+-..+.+ ..|++|+|++|
T Consensus 315 LdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 315 LDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 999999987 55543332 12556677777777655444433 67888899988
Q ss_pred CCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCc
Q 007628 145 DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP 224 (595)
Q Consensus 145 ~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP 224 (595)
++...-...+.++ ..|++|+|++|+++ .+++.+.+|..|++|...+|+|. .+| ++.++..|+.|||+.|+|+...-
T Consensus 394 rL~~fpas~~~kl-e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 394 RLNSFPASKLRKL-EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred ccccCCHHHHhch-HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence 8875444445555 78888999999888 67788888888999988888888 677 78888899999999999876544
Q ss_pred hhccCCCCCcEEEcccccC
Q 007628 225 SSVCQLPNLQNFTYSFNYF 243 (595)
Q Consensus 225 ~~l~~l~~L~~L~Ls~N~L 243 (595)
.......+|++|||++|..
T Consensus 470 ~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 470 PEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhCCCcccceeeccCCcc
Confidence 4444457899999998873
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=1.4e-17 Score=201.52 Aligned_cols=224 Identities=18% Similarity=0.220 Sum_probs=146.4
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
+.+|+.|+|++|+|.. ++..+..+.+|+.|+|++|...+.++ .+.++.+|++|+|++|.....++..|.+|.+|++|+
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 4677788888888765 56667788888888888776544555 377788888888888776667788888888888888
Q ss_pred ccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCccc--------------------
Q 007628 95 LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSI-------------------- 154 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l-------------------- 154 (595)
|++|...+.++..+...+|+.|+|++|.....+++.. .+|++|+|.+|.|+. ++..+
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCcccc-ccccccccccccccccccchhhccc
Confidence 8886554567666555677777777765544443321 345566666655432 22111
Q ss_pred ---------ccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCC------------------
Q 007628 155 ---------GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMK------------------ 207 (595)
Q Consensus 155 ---------~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~------------------ 207 (595)
..+..+|+.|+|++|...+.++.+|++|.+|+.|+|++|...+.++..+ .+.
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 1112357777777777777777788888888888887765433455443 333
Q ss_pred ---CccEEEccCCcCCCCCchhccCCCCCcEEEccc-ccCCC
Q 007628 208 ---SLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF-NYFTG 245 (595)
Q Consensus 208 ---~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~-N~Lsg 245 (595)
+|++|+|++|.|+ .++.++..+.+|+.|+|++ |+|.+
T Consensus 844 ~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 844 ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence 4555555555555 4566667777777777776 44443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=2.3e-18 Score=197.17 Aligned_cols=204 Identities=21% Similarity=0.391 Sum_probs=118.4
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
+...|+|++++++. ++..+. .+|+.|+|++|+|+. ++..+. .+|++|+|++|+|+ .++..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 35667777777765 344442 467777777777773 444432 46777777777776 3444332 357777777
Q ss_pred CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628 97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176 (595)
Q Consensus 97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip 176 (595)
+|+|. .++..+. .+|+.|+|++|++. .+++.+. .+|++|+|++|+|++ ++..+. .+|++|+|++|++.. ++
T Consensus 250 ~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp---~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 250 INRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP---SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch---hhHHHHHhcCCcccc-CC
Confidence 77776 5555443 46777777777766 3444443 367777777777763 333332 356667777776663 33
Q ss_pred CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
..+ ..+|+.|+|++|.|++ ++..+. .+|+.|+|++|+|+ .++..+. .+|+.|+|++|.|+..
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL 382 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC
Confidence 322 2456666666666652 444432 45666666666665 3444332 3566666666665543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=3.6e-18 Score=194.80 Aligned_cols=210 Identities=21% Similarity=0.308 Sum_probs=117.4
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcC-----------------CCCCCEEeccCCcCCCc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRR-----------------LKLLYEVDLSNNRFVGK 79 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~-----------------L~~L~~L~Ls~N~Lsg~ 79 (595)
+|+.|+|.+|+|+. ++. .+.+|++|+|++|+|+.+ +..+.+ +.+|+.|+|++|+|+ .
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~ 296 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-S 296 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-c
Confidence 46778888888776 332 256778888888877743 322111 123344444444444 2
Q ss_pred CchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccc----
Q 007628 80 FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIG---- 155 (595)
Q Consensus 80 lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~---- 155 (595)
++. .+.+|++|||++|+|++ ++.. ..+|+.|++.+|++++ ++... .+|++|+|++|+|++ ++....
T Consensus 297 LP~---~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~lp--~~Lq~LdLS~N~Ls~-LP~lp~~L~~ 366 (788)
T PRK15387 297 LPV---LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTLP--SGLQELSVSDNQLAS-LPTLPSELYK 366 (788)
T ss_pred ccc---cccccceeECCCCcccc-CCCC--cccccccccccCcccc-ccccc--cccceEecCCCccCC-CCCCCcccce
Confidence 222 13457777777777663 3321 1234445555554442 22211 245566666666653 222110
Q ss_pred ------------cccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628 156 ------------KMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 156 ------------~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
.+..+|+.|+|++|+|.+ ++.. ..+|+.|+|++|+|+ .++.. +.+|+.|+|++|+|+ .+
T Consensus 367 L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~L 437 (788)
T PRK15387 367 LWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RL 437 (788)
T ss_pred ehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-cc
Confidence 011234455555555542 2322 235666666666666 34433 245677888888887 67
Q ss_pred chhccCCCCCcEEEcccccCCCCCCccc
Q 007628 224 PSSVCQLPNLQNFTYSFNYFTGEPPSCT 251 (595)
Q Consensus 224 P~~l~~l~~L~~L~Ls~N~Lsg~~p~~~ 251 (595)
+..|.+|.+|+.|+|++|.|+|.+...+
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 8888899999999999999998766543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=1.6e-17 Score=190.24 Aligned_cols=205 Identities=26% Similarity=0.436 Sum_probs=163.7
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
..|+.|+|++|+|+. ++..+. .+|+.|+|++|+|+. ++..+. .+|+.|+|++|+|. .++..+. .+|++|+|
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 468999999999996 455543 589999999999994 565553 47999999999998 6666654 58999999
Q ss_pred cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628 96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL 175 (595)
Q Consensus 96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i 175 (595)
++|+|+ .++..+. .+|+.|+|++|+|+. ++..+. ..|+.|+|++|+|+. ++..+. .+|+.|++++|.|++ +
T Consensus 270 s~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~---~sL~~L~Ls~N~Lt~-L 340 (754)
T PRK15370 270 FHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLTA-LPETLP---PGLKTLEAGENALTS-L 340 (754)
T ss_pred cCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCcccc-CCcccc---ccceeccccCCcccc-C
Confidence 999998 5676554 589999999999984 444333 468999999999985 454443 579999999999985 6
Q ss_pred CCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 176 PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 176 p~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+..+. .+|+.|+|++|+|+ .++..+. .+|++|+|++|+|+ .++..+. .+|+.|++++|+|++.
T Consensus 341 P~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 341 PASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRL 403 (754)
T ss_pred Chhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccC
Confidence 66553 68999999999998 5676553 68999999999999 4566554 3699999999999864
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.7e-20 Score=192.75 Aligned_cols=233 Identities=23% Similarity=0.223 Sum_probs=168.1
Q ss_pred CCCCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCCC------CCchhhcCCCCCCEEeccCCcCCCcCch
Q 007628 13 PSLRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFCG------VVPSTFRRLKLLYEVDLSNNRFVGKFPK 82 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~------~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~ 82 (595)
..+..|+.|+|+++.|++. +...+..+.+|+.|+++++.+.+ .+...|.++.+|++|+|++|.+.+....
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3455689999999998543 44556677789999999998872 2345678889999999999999866666
Q ss_pred hcCCCCC---CCEEEccCCCCCCCCCccc----cc--cCCCeeeccCCccccCCCc----cc-CCCCceeEEeeccCCCC
Q 007628 83 LFLSLPK---LKYLDLRFNEFEGSVPSKL----FD--KDLDAIFLNDNRFQFGIPE----NL-GNSPVSVLVFANNDLGG 148 (595)
Q Consensus 83 ~l~~L~~---L~~LdLs~N~l~g~ip~~l----~~--~~L~~L~L~~N~l~~~~p~----~l-~~~~L~~L~L~~N~l~~ 148 (595)
.|..+.+ |++|+|++|++.+..-..+ .. .+|+.|+|++|++++.... .+ ....|++|+|++|.+++
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 6655555 9999999999874222221 11 5789999999998843222 22 23579999999999886
Q ss_pred CcCcc----cccccchhhHHHhhccccCCC----CCCccCCCccceEEeccCccccCCCCCCcC-----CCCCccEEEcc
Q 007628 149 CIPGS----IGKMGKTLNEIILMNDNLTGC----LPPQIGMLKNLTVFDVSFNHLQGSLPSSIG-----NMKSLEQLNVA 215 (595)
Q Consensus 149 ~ip~~----l~~l~~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~-----~L~~L~~L~Ls 215 (595)
..-.. +..+ .+|++|+|++|.+.+. +...+..+.+|++|+|++|.+++.....+. ...+|++|+|+
T Consensus 180 ~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 180 AGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred HHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 43332 2333 4899999999988643 334566778899999999998753222222 24789999999
Q ss_pred CCcCCC----CCchhccCCCCCcEEEcccccCCCC
Q 007628 216 HNRFTG----VIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 216 ~N~Lsg----~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+|+|++ .+.+.+..+.+|++||+++|.|+.+
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 999972 3445667778999999999999865
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-19 Score=201.17 Aligned_cols=221 Identities=24% Similarity=0.351 Sum_probs=171.0
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhc--------
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLF-------- 84 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l-------- 84 (595)
..+.+|+.|++.+|+|.. ++..+.++.+|+.|++.+|++. .++..+..++.|+.|||..|+|. .+++.|
T Consensus 261 ~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 261 GACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASL 337 (1081)
T ss_pred HhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHH
Confidence 345689999999999854 6778888888888888888888 67778888888999999888887 322211
Q ss_pred ------------------CCCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeecc
Q 007628 85 ------------------LSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANN 144 (595)
Q Consensus 85 ------------------~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N 144 (595)
..+..|++|+|.+|.|++..-..+.. ..||.|+|++|++...-...+.. ..|++|+|++|
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 11344788888899988655444444 89999999999987443333433 57999999999
Q ss_pred CCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCC-CCCCcCCCCCccEEEccCCcCCCCC
Q 007628 145 DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGS-LPSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 145 ~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~-lP~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
+++ .+++.+.++ ..|++|...+|+|. +++ ++..+..|++|||+.|+|+.. +++.+. -.+|++|||++|.-....
T Consensus 418 kL~-~Lp~tva~~-~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d 492 (1081)
T KOG0618|consen 418 KLT-TLPDTVANL-GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFD 492 (1081)
T ss_pred hhh-hhhHHHHhh-hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccc
Confidence 998 677888888 78999999999998 777 889999999999999999743 333332 389999999999843344
Q ss_pred chhccCCCCCcEEEcccc
Q 007628 224 PSSVCQLPNLQNFTYSFN 241 (595)
Q Consensus 224 P~~l~~l~~L~~L~Ls~N 241 (595)
-..|..+++|..+++.-|
T Consensus 493 ~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 493 HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhHHhhhhhheecccC
Confidence 466777777777777766
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=1.9e-19 Score=165.91 Aligned_cols=163 Identities=23% Similarity=0.399 Sum_probs=141.6
Q ss_pred hcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCcee
Q 007628 60 FRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSV 138 (595)
Q Consensus 60 ~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~ 138 (595)
+.++.+++.|.|++|+|+ .++..+..|.+|+.|++++|+|+ .++..+.. .+|++|++.-|++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-------------- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-------------- 92 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--------------
Confidence 456788899999999999 67778999999999999999998 66655544 56666666666554
Q ss_pred EEeeccCCCCCcCcccccccchhhHHHhhccccC-CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCC
Q 007628 139 LVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT-GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHN 217 (595)
Q Consensus 139 L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~-g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N 217 (595)
+++.+|+.+ ..|++|||.+|++. ..++..|..|..|+.|.|++|.|. .++..+++|++|+.|.|.+|
T Consensus 93 ----------~lprgfgs~-p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 93 ----------ILPRGFGSF-PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ----------cCccccCCC-chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 678889888 88999999999987 468889999999999999999999 89999999999999999999
Q ss_pred cCCCCCchhccCCCCCcEEEcccccCCCCCCccc
Q 007628 218 RFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251 (595)
Q Consensus 218 ~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~ 251 (595)
.|. .++..++.|.+|++|.+.+|+|+-..++..
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 998 689999999999999999999998777543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=2.8e-19 Score=186.10 Aligned_cols=229 Identities=21% Similarity=0.226 Sum_probs=170.8
Q ss_pred CCCceeEEEccCCCCCC------CCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCC---CCEEeccCCcCCC----cC
Q 007628 14 SLRVVASIDLNHADIAG------YLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKL---LYEVDLSNNRFVG----KF 80 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~------~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~---L~~L~Ls~N~Lsg----~l 80 (595)
...+++.|+++++.+.+ .+...|.++.+|+.|+|++|.+.+.....|..+.+ |++|+|++|++.+ .+
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 44568999999998873 23456778999999999999998777777777666 9999999999883 33
Q ss_pred chhcCCC-CCCCEEEccCCCCCCCCCccccc-----cCCCeeeccCCccccCCCcc-----cCCCCceeEEeeccCCCCC
Q 007628 81 PKLFLSL-PKLKYLDLRFNEFEGSVPSKLFD-----KDLDAIFLNDNRFQFGIPEN-----LGNSPVSVLVFANNDLGGC 149 (595)
Q Consensus 81 p~~l~~L-~~L~~LdLs~N~l~g~ip~~l~~-----~~L~~L~L~~N~l~~~~p~~-----l~~~~L~~L~L~~N~l~~~ 149 (595)
...+..+ .+|++|+|++|.|++.....+.. .+|++|+|.+|.+++..-.. ..+.+|++|+|++|.|++.
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 3456677 89999999999998643332221 57999999999988532221 1235899999999998755
Q ss_pred cCcc----cccccchhhHHHhhccccCCCCCCccC-----CCccceEEeccCccccC----CCCCCcCCCCCccEEEccC
Q 007628 150 IPGS----IGKMGKTLNEIILMNDNLTGCLPPQIG-----MLKNLTVFDVSFNHLQG----SLPSSIGNMKSLEQLNVAH 216 (595)
Q Consensus 150 ip~~----l~~l~~~L~~L~Ls~N~l~g~ip~~~~-----~L~~L~~LdLs~N~L~g----~lP~~l~~L~~L~~L~Ls~ 216 (595)
.... +..+ .+|++|++++|.+.+.....|. ...+|++|+|++|.|+. .+.+.+..+.+|++|+|++
T Consensus 209 ~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 209 GASALAETLASL-KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHHHHHhccc-CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 4333 3334 6799999999998753222222 23799999999999972 3345566778999999999
Q ss_pred CcCCCC----CchhccCC-CCCcEEEcccccC
Q 007628 217 NRFTGV----IPSSVCQL-PNLQNFTYSFNYF 243 (595)
Q Consensus 217 N~Lsg~----iP~~l~~l-~~L~~L~Ls~N~L 243 (595)
|.|+.. +...+... ..|+.||+.+|.|
T Consensus 288 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 288 NKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999854 55556666 7899999998865
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.70 E-value=2.2e-16 Score=191.29 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=144.6
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~ 97 (595)
|+.|++.++.+.. ++..| .+.+|+.|+|.+|+|. .+...+..|.+|++|+|++|+..+.++ .+..+.+|++|+|++
T Consensus 591 Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 4444444444432 33333 3567777777777776 455666777788888887765444555 366777888888877
Q ss_pred CCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628 98 NEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176 (595)
Q Consensus 98 N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip 176 (595)
|.....++..+.. .+|+.|+|++|...+.++..+...+|+.|+|++|.....+++. ..+|++|+|.+|.+. .++
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFP 741 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-ccc
Confidence 7655566666544 6788888887766666776666677888888887655444432 245677777777754 233
Q ss_pred Ccc------------------------------CCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchh
Q 007628 177 PQI------------------------------GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSS 226 (595)
Q Consensus 177 ~~~------------------------------~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~ 226 (595)
..+ ..+.+|+.|+|++|...+.++.+|++|.+|+.|+|++|...+.++..
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 221 11247889999999888889999999999999999998655566655
Q ss_pred ccCCCCCcEEEccccc
Q 007628 227 VCQLPNLQNFTYSFNY 242 (595)
Q Consensus 227 l~~l~~L~~L~Ls~N~ 242 (595)
+ ++.+|+.|+|++|.
T Consensus 822 ~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 822 I-NLESLESLDLSGCS 836 (1153)
T ss_pred C-CccccCEEECCCCC
Confidence 4 56666666666653
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=2.9e-16 Score=179.32 Aligned_cols=114 Identities=19% Similarity=0.335 Sum_probs=76.7
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~ 97 (595)
-+.|||++++|+. ++..|. .+|+.|+|.+|+|+. ++. .+.+|++|+|++|+|+. ++.. ..+|+.|+|++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 5688999999985 677775 479999999999995 443 36889999999999994 4543 35677777777
Q ss_pred CCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCC
Q 007628 98 NEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGG 148 (595)
Q Consensus 98 N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~ 148 (595)
|.|+ .++.. ..+|+.|+|.+|+++. ++.. ..+|++|+|++|+|++
T Consensus 272 N~L~-~Lp~l--p~~L~~L~Ls~N~Lt~-LP~~--p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 272 NPLT-HLPAL--PSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLAS 316 (788)
T ss_pred Cchh-hhhhc--hhhcCEEECcCCcccc-cccc--ccccceeECCCCcccc
Confidence 7766 33331 1455666666666552 2221 1345666666665553
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.64 E-value=1.1e-17 Score=178.14 Aligned_cols=178 Identities=28% Similarity=0.478 Sum_probs=116.2
Q ss_pred CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeee
Q 007628 38 RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF 117 (595)
Q Consensus 38 ~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~ 117 (595)
.|.+...+||+.|++. +++.++..|..|+.|.|..|.|. .++..+.+|..|.+|||+.|++. .++..+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l--------- 140 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGL--------- 140 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhh---------
Confidence 3555556666666666 56666666666666666666666 56666666666666666666665 444444
Q ss_pred ccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccC
Q 007628 118 LNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG 197 (595)
Q Consensus 118 L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g 197 (595)
+...|++|.+++|+++ .+++.|+ +...|..|+.+.|++. .++..++.|.+|+.|+++.|++.
T Consensus 141 --------------C~lpLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~- 202 (722)
T KOG0532|consen 141 --------------CDLPLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE- 202 (722)
T ss_pred --------------hcCcceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-
Confidence 4445555555555554 5666666 3366777777777776 56666777777777777777776
Q ss_pred CCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628 198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 198 ~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~ 247 (595)
.++++++.| .|..||+++|+|+ .|+..|.+|.+|++|-|.+|-|..-.
T Consensus 203 ~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 203 DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence 566666644 4677777777776 66777777777777777777766543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.54 E-value=4.9e-16 Score=165.66 Aligned_cols=174 Identities=25% Similarity=0.400 Sum_probs=135.7
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.|.....+||+.|.+.. ++.+++.|..|+.|.|.+|.|. .++..+++|..|++|||+.|+|+ .++..+..|. |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 45667789999999986 7889999999999999999999 78999999999999999999999 7788787776 9999
Q ss_pred EccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
.+++|+++ .++..+.. ..|..|+.+.|++. .++..++.+ .+|+.|.+..|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~------------------------slpsql~~l-~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------------------------SLPSQLGYL-TSLRDLNVRRNHLE 202 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh------------------------hchHHhhhH-HHHHHHHHhhhhhh
Confidence 99999998 55555443 45555555555554 455555555 56777777777776
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT 220 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Ls 220 (595)
.+++++..| .|..||+++|++. .|+-.|.+|+.|++|.|.+|-|.
T Consensus 203 -~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 203 -DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 556666633 5777777777777 67777777777777777777776
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.49 E-value=4.1e-14 Score=152.54 Aligned_cols=196 Identities=31% Similarity=0.384 Sum_probs=122.1
Q ss_pred EEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCC-CCCEEEccCCCCCCCCCcccc-ccCCCeeeccCC
Q 007628 44 IFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLP-KLKYLDLRFNEFEGSVPSKLF-DKDLDAIFLNDN 121 (595)
Q Consensus 44 ~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~-~L~~LdLs~N~l~g~ip~~l~-~~~L~~L~L~~N 121 (595)
.|++++|++.. ....+..++.|+.|++.+|+++ .+......+. +|++||+++|+|. .++..+. ..+|+.|++.+|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666532 2234455566666677666666 4444455553 6667777776666 3332222 266666777666
Q ss_pred ccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCC
Q 007628 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPS 201 (595)
Q Consensus 122 ~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~ 201 (595)
++............|+.|++++|++. .++..+..+ ..|++|++++|.+. .+...+.++.+|..|.+.+|++. .+..
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhh-hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 66633222224556667777777766 444444333 55778888877544 34556677777777777777776 4466
Q ss_pred CcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 202 SIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 202 ~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
.++.+.+|++|++++|+++..- . +..+.+|+.|++++|.+.....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceeccccccccccc-c-ccccCccCEEeccCccccccch
Confidence 6777777888888888887432 2 7777788888888877765543
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=1.6e-13 Score=156.22 Aligned_cols=123 Identities=24% Similarity=0.422 Sum_probs=105.4
Q ss_pred CceecccCCCCCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcC
Q 007628 1 MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF 80 (595)
Q Consensus 1 ~gv~C~~~~~~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~l 80 (595)
.||.|.... ......|+.|+|++|++.+.++..|++|.+|+.|+|++|+|.|.++..|++|.+|+.|||++|+|+|.+
T Consensus 405 ~Gv~C~~~~--~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 405 SGADCQFDS--TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred ccceeeccC--CCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence 478885321 122336999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcCCCCCCCEEEccCCCCCCCCCccccc--cCCCeeeccCCcccc
Q 007628 81 PKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQF 125 (595)
Q Consensus 81 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~ 125 (595)
++.|.+|.+|++|||++|+|+|.++..+.. .++..+++.+|...+
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999999999999999999987754 345566777666543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.40 E-value=2.4e-13 Score=146.53 Aligned_cols=200 Identities=31% Similarity=0.494 Sum_probs=156.0
Q ss_pred EEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCC-CCCEEeccCCcCCCcCchhcCCCCCCCEEEccCC
Q 007628 20 SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLK-LLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98 (595)
Q Consensus 20 ~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~-~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N 98 (595)
.|++..+.+... ...+..+..++.|++.+|.|+ .+......+. +|++|+|++|+|. .++..++++.+|+.|+|++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 477777776432 245666788999999999999 5667777775 9999999999998 55567889999999999999
Q ss_pred CCCCCCCccc-cccCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628 99 EFEGSVPSKL-FDKDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176 (595)
Q Consensus 99 ~l~g~ip~~l-~~~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip 176 (595)
++. .++... ...+|+.|++++|++. .++..+.. ..|++|.+++|.+. .+...+.++ ..+..|.+.+|++. .+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhc-ccccccccCCceee-ecc
Confidence 998 666655 5589999999999988 45555433 45999999999643 344555555 67788888888876 446
Q ss_pred CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccC
Q 007628 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ 229 (595)
Q Consensus 177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~ 229 (595)
..++.+.+|+.|++++|.++ .+.. ++.+.+|+.|++++|.++..+...+..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhhcc
Confidence 78888999999999999998 4444 899999999999999998765554433
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.9e-14 Score=148.34 Aligned_cols=209 Identities=23% Similarity=0.261 Sum_probs=144.7
Q ss_pred cCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCEEeccCCcCCCc--CchhcCCCCCCCEEEccCCCCCCCCCccccc--c
Q 007628 37 GRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEVDLSNNRFVGK--FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--K 111 (595)
Q Consensus 37 ~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~L~Ls~N~Lsg~--lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--~ 111 (595)
.++++|+++.|++.++....- .....|.+++.|||+.|-|... +-....+|++|+.|+|+.|+|.-.+...... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 468889999999988774322 4677899999999999988743 2345678999999999999987444333322 6
Q ss_pred CCCeeeccCCccccCCCcc--cCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC-CCccCCCccceEE
Q 007628 112 DLDAIFLNDNRFQFGIPEN--LGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL-PPQIGMLKNLTVF 188 (595)
Q Consensus 112 ~L~~L~L~~N~l~~~~p~~--l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i-p~~~~~L~~L~~L 188 (595)
.|+.|.|+.|.|+..--.. +....|+.|+|..|+..+........+ +.|++|+|++|++.... -..++.|.+|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~-~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL-QTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh-hHHhhccccCCcccccccccccccccchhhh
Confidence 7888999988887332222 233578888888886443433444334 78899999988876321 2346678888888
Q ss_pred eccCccccCC-CCCC-----cCCCCCccEEEccCCcCCCC-CchhccCCCCCcEEEcccccCCCC
Q 007628 189 DVSFNHLQGS-LPSS-----IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 189 dLs~N~L~g~-lP~~-----l~~L~~L~~L~Ls~N~Lsg~-iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+|+.|.+... +++. ...+.+|++|+++.|++... --..+..+.+|+.|.+..|.|+-.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 9888887632 1222 35567889999999988532 114455667778888888887654
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-14 Score=148.03 Aligned_cols=229 Identities=17% Similarity=0.226 Sum_probs=162.5
Q ss_pred CCCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCC---cCCCCCchh-------hcCCCCCCEEeccCCcCCCc
Q 007628 14 SLRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSN---RFCGVVPST-------FRRLKLLYEVDLSNNRFVGK 79 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N---~l~~~lp~~-------~~~L~~L~~L~Ls~N~Lsg~ 79 (595)
.+..++.|+|++|.|... +...+.+.++|+..+|++- ++...++.. +..+.+|++||||+|-|.-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456899999999987632 5566778889999998864 333344433 44566899999999988733
Q ss_pred ----CchhcCCCCCCCEEEccCCCCCCCCCccc-----c----------ccCCCeeeccCCccccCCCcc----cCC-CC
Q 007628 80 ----FPKLFLSLPKLKYLDLRFNEFEGSVPSKL-----F----------DKDLDAIFLNDNRFQFGIPEN----LGN-SP 135 (595)
Q Consensus 80 ----lp~~l~~L~~L~~LdLs~N~l~g~ip~~l-----~----------~~~L~~L~L~~N~l~~~~p~~----l~~-~~ 135 (595)
+-+.|+++..|++|.|.||.+. .+-... + ..+|+.+...+|++...-... +.. ..
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 3456778899999999999986 222211 1 147888999999887443322 222 47
Q ss_pred ceeEEeeccCCCCC----cCcccccccchhhHHHhhccccCCC----CCCccCCCccceEEeccCccccCCCCCCc----
Q 007628 136 VSVLVFANNDLGGC----IPGSIGKMGKTLNEIILMNDNLTGC----LPPQIGMLKNLTVFDVSFNHLQGSLPSSI---- 203 (595)
Q Consensus 136 L~~L~L~~N~l~~~----ip~~l~~l~~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~L~g~lP~~l---- 203 (595)
|+.+.+..|.|... +...|..+ .+|++|||.+|.|+.. +.+.+..|++|++|+|++|.|...--.+|
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 88899999987643 23444555 7899999999988743 44567778899999999999875433333
Q ss_pred -CCCCCccEEEccCCcCCCC----CchhccCCCCCcEEEcccccCC
Q 007628 204 -GNMKSLEQLNVAHNRFTGV----IPSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 204 -~~L~~L~~L~Ls~N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Ls 244 (595)
....+|++|.|.+|.|+.. +-..+.....|+.|+|++|+|.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2356899999999998642 3344556788999999999994
No 30
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.35 E-value=9.3e-14 Score=150.99 Aligned_cols=128 Identities=20% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
+..++.++|+.|.|.. +-..++.+++|+.|+|.+|+|..+ ...+..|.+|++|+|++|+|+.+. .+..|..|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3444445555555544 223355555555555555555532 222455555555555555555332 234444455555
Q ss_pred ccCCCCCCCCCccccccCCCeeeccCCccccCCCc-ccCCCCceeEEeeccCCC
Q 007628 95 LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE-NLGNSPVSVLVFANNDLG 147 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~-~l~~~~L~~L~L~~N~l~ 147 (595)
+++|.|+ .+........|+.++|.+|++...-.+ .-.+..++.+++.+|.+.
T Consensus 147 l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 5555555 333333335555555555555433221 122334444555555443
No 31
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.32 E-value=1.8e-13 Score=148.73 Aligned_cols=219 Identities=21% Similarity=0.247 Sum_probs=152.5
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
.++.+|+.++.+.+.... ...+..|+.|+|+.|.|.. +-..+..+.+|+.|+|.+|+|.++ ...+..|.+|++|||+
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence 344555555544332211 1567788888899999884 456688999999999999999944 3337889999999999
Q ss_pred CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628 97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176 (595)
Q Consensus 97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip 176 (595)
+|+|+ .+........|+.|++.+|.+.. +..+-....|+.+++++|++...-...+..+ ..|+.|++.+|.+...
T Consensus 127 ~N~I~-~i~~l~~l~~L~~L~l~~N~i~~-~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~i-- 201 (414)
T KOG0531|consen 127 FNKIT-KLEGLSTLTLLKELNLSGNLISD-ISGLESLKSLKLLDLSYNRIVDIENDELSEL-ISLEELDLGGNSIREI-- 201 (414)
T ss_pred ccccc-cccchhhccchhhheeccCcchh-ccCCccchhhhcccCCcchhhhhhhhhhhhc-cchHHHhccCCchhcc--
Confidence 99998 55555555679999999999873 2333336789999999999986554212334 6899999999988733
Q ss_pred CccCCCccceEEeccCccccCCCCCCcCCCC--CccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMK--SLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~--~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
..+..+..+..+++..|.++ .+- .+..+. +|+.|++++|.+.. +...+..+..++.|++.+|++...
T Consensus 202 ~~~~~~~~l~~~~l~~n~i~-~~~-~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 202 EGLDLLKKLVLLSLLDNKIS-KLE-GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cchHHHHHHHHhhcccccce-ecc-CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc
Confidence 33444556666677888776 221 222223 37888888888763 225566677788888888877653
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.2e-13 Score=137.70 Aligned_cols=186 Identities=24% Similarity=0.216 Sum_probs=141.9
Q ss_pred cCCCCCCEEeccCCcCCCcCc-hhcCCCCCCCEEEccCCCCCCCCCccc--cc--cCCCeeeccCCccccCCCcccC--C
Q 007628 61 RRLKLLYEVDLSNNRFVGKFP-KLFLSLPKLKYLDLRFNEFEGSVPSKL--FD--KDLDAIFLNDNRFQFGIPENLG--N 133 (595)
Q Consensus 61 ~~L~~L~~L~Ls~N~Lsg~lp-~~l~~L~~L~~LdLs~N~l~g~ip~~l--~~--~~L~~L~L~~N~l~~~~p~~l~--~ 133 (595)
.++..|+++.|.+..+....- +....|.+++.|||+.|.|. .+...+ .. .+|+.|+|+.|++......... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 578889999999998762221 46778999999999999887 332221 11 7899999999999855444333 3
Q ss_pred CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCC-CCCCcCCCCCccEE
Q 007628 134 SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGS-LPSSIGNMKSLEQL 212 (595)
Q Consensus 134 ~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~-lP~~l~~L~~L~~L 212 (595)
..|+.|.|+.|+|+..--..+.....+|+.|+|..|+..++.......++.|++|||++|+|... .--.++.|..|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 67899999999999766566666668999999999975556566667789999999999998632 12457889999999
Q ss_pred EccCCcCCCC-Cchh-----ccCCCCCcEEEcccccCCCCC
Q 007628 213 NVAHNRFTGV-IPSS-----VCQLPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 213 ~Ls~N~Lsg~-iP~~-----l~~l~~L~~L~Ls~N~Lsg~~ 247 (595)
+++.|.|... +++. ...+.+|+.|++..|++..|-
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 9999998753 2222 456789999999999997653
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=1.6e-13 Score=139.49 Aligned_cols=223 Identities=21% Similarity=0.276 Sum_probs=160.1
Q ss_pred ccCCCCCCCCchhhcCCCCCcEEEccCCcCCC----CCchhhcCCCCCCEEeccCCcCCCc-----------CchhcCCC
Q 007628 23 LNHADIAGYLPPEIGRLTDLAIFHINSNRFCG----VVPSTFRRLKLLYEVDLSNNRFVGK-----------FPKLFLSL 87 (595)
Q Consensus 23 Ls~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~----~lp~~~~~L~~L~~L~Ls~N~Lsg~-----------lp~~l~~L 87 (595)
|....-.+.+-..+..+..++.|+|++|.|.. .+...|.+.++|+..++++-. +|. +...+..+
T Consensus 13 l~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~ 91 (382)
T KOG1909|consen 13 LETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGC 91 (382)
T ss_pred eehHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcC
Confidence 33333334455667789999999999999974 355667888999999998763 332 23345567
Q ss_pred CCCCEEEccCCCCCCCCCccccc-----cCCCeeeccCCccccCCCcc-------------cC-CCCceeEEeeccCCCC
Q 007628 88 PKLKYLDLRFNEFEGSVPSKLFD-----KDLDAIFLNDNRFQFGIPEN-------------LG-NSPVSVLVFANNDLGG 148 (595)
Q Consensus 88 ~~L~~LdLs~N~l~g~ip~~l~~-----~~L~~L~L~~N~l~~~~p~~-------------l~-~~~L~~L~L~~N~l~~ 148 (595)
.+|++||||+|.|.-.....+.. .+|++|+|.+|.+.-.-... +. ...|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 79999999999998555544432 68999999999876221111 11 2468999999999986
Q ss_pred CcCcccccc---cchhhHHHhhccccCCC----CCCccCCCccceEEeccCccccCC----CCCCcCCCCCccEEEccCC
Q 007628 149 CIPGSIGKM---GKTLNEIILMNDNLTGC----LPPQIGMLKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHN 217 (595)
Q Consensus 149 ~ip~~l~~l---~~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l~~L~~L~~L~Ls~N 217 (595)
.....|... ...|+++.+..|.|... +...|..|++|++|||++|.|+.. +-+.+..+.+|++|+|++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 544444322 25788888999987632 345677899999999999999733 4456778889999999999
Q ss_pred cCCCCCc----hhc-cCCCCCcEEEcccccCCCC
Q 007628 218 RFTGVIP----SSV-CQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 218 ~Lsg~iP----~~l-~~l~~L~~L~Ls~N~Lsg~ 246 (595)
.|...-- +.| ....+|++|+|.+|.++.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 9975322 222 3367899999999999764
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=4.5e-12 Score=144.34 Aligned_cols=109 Identities=31% Similarity=0.578 Sum_probs=85.2
Q ss_pred ceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEcc
Q 007628 136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVA 215 (595)
Q Consensus 136 L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls 215 (595)
++.|+|++|.+.|.++..|+++ .+|+.|+|++|+|.|.++..|+.|.+|+.|||++|+|+|.+++.|++|.+|++|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6677888888888888888777 778888888888888888888888888888888888888888888888888888888
Q ss_pred CCcCCCCCchhccCC-CCCcEEEcccccCCC
Q 007628 216 HNRFTGVIPSSVCQL-PNLQNFTYSFNYFTG 245 (595)
Q Consensus 216 ~N~Lsg~iP~~l~~l-~~L~~L~Ls~N~Lsg 245 (595)
+|+|+|.++..+.++ .++..|++.+|...+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 888888888777653 456777777776544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=6.2e-13 Score=132.58 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=82.8
Q ss_pred CCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEec
Q 007628 112 DLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDV 190 (595)
Q Consensus 112 ~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdL 190 (595)
.|+.|||++|.++. +.+...+ ..+++|++++|+|... +++..+ .+|++|||++|.++. +-.+-.+|-|++.|+|
T Consensus 285 ~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L-~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAEL-PQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhc-ccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 45555555555542 2222222 4566666666666532 235555 677788888887763 3344455677888888
Q ss_pred cCccccCCCCCCcCCCCCccEEEccCCcCCCCC-chhccCCCCCcEEEcccccCCCCCC
Q 007628 191 SFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI-PSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 191 s~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i-P~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
++|.|.. + ..++.|-+|..||+++|+|.... -..+++|..|+.|.|.+|-|.+.+.
T Consensus 360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8888762 2 34667777888888888886421 2457778888888888888877654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=2.1e-12 Score=128.80 Aligned_cols=132 Identities=22% Similarity=0.280 Sum_probs=95.7
Q ss_pred CCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHH
Q 007628 86 SLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEI 164 (595)
Q Consensus 86 ~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L 164 (595)
..+.|++||||+|.|+ .|.+.+.. ..++.|+|+.|.+...-. ...+.+|..|+|++|.++.+ .++-.++ -+++.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KL-GNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKL-GNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhhHhhh-cCEeee
Confidence 3466888888888887 56555544 778888888888763322 33446788888888887633 2333333 567889
Q ss_pred HhhccccCCCCCCccCCCccceEEeccCccccCC-CCCCcCCCCCccEEEccCCcCCCCC
Q 007628 165 ILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGS-LPSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 165 ~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~-lP~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
.|++|.|.. -..+++|-+|..|||++|+|... --..|++|..|++|.|.+|-|.+..
T Consensus 358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 999988752 24567788999999999999732 2356899999999999999998653
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=2.3e-11 Score=141.97 Aligned_cols=177 Identities=18% Similarity=0.202 Sum_probs=119.7
Q ss_pred CceeEEEccCCC--CCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 16 RVVASIDLNHAD--IAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 16 ~~L~~LdLs~n~--i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.+|++|-+.+|. +..+..+.|..|+.|++|||++|.--+.+++.+++|.+|++|+|++..|. .++..|.+|++|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 357788888885 66666667889999999999998877789999999999999999999999 889999999999999
Q ss_pred EccCCCCCCCCCcccc-ccCCCeeeccCCccccCC--Cccc-CCCCceeEEeeccCCCCCcCccc---ccccchhhHHHh
Q 007628 94 DLRFNEFEGSVPSKLF-DKDLDAIFLNDNRFQFGI--PENL-GNSPVSVLVFANNDLGGCIPGSI---GKMGKTLNEIIL 166 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~-~~~L~~L~L~~N~l~~~~--p~~l-~~~~L~~L~L~~N~l~~~ip~~l---~~l~~~L~~L~L 166 (595)
||.++.....+..... ..+|++|.|......... -.++ .+..|+.|.+..... .+-..+ .++....+.+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence 9998876656655555 488999998776532211 1122 113344444433222 111111 122122233333
Q ss_pred hccccCCCCCCccCCCccceEEeccCcccc
Q 007628 167 MNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ 196 (595)
Q Consensus 167 s~N~l~g~ip~~~~~L~~L~~LdLs~N~L~ 196 (595)
.++... .....++.|.+|+.|.+.++.+.
T Consensus 702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 702 EGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cccccc-eeecccccccCcceEEEEcCCCc
Confidence 232222 34456777888888888888775
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=1.9e-11 Score=116.63 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=14.6
Q ss_pred EccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhc-CCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCC
Q 007628 22 DLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR-RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEF 100 (595)
Q Consensus 22 dLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~-~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l 100 (595)
+|+.+.|..+ ..+.+..++++|+|++|+|+.+ +.++ .|.+|+.|||++|+|+.+ +.|..|.+|++|+|++|+|
T Consensus 3 ~lt~~~i~~~--~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 3 RLTANMIEQI--AQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS--
T ss_pred cccccccccc--cccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCC
Confidence 3444545432 2344555678888888888743 3454 577788888888887743 2466777788888888877
Q ss_pred C
Q 007628 101 E 101 (595)
Q Consensus 101 ~ 101 (595)
+
T Consensus 77 ~ 77 (175)
T PF14580_consen 77 S 77 (175)
T ss_dssp -
T ss_pred C
Confidence 6
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.09 E-value=2.5e-12 Score=126.86 Aligned_cols=86 Identities=24% Similarity=0.291 Sum_probs=49.3
Q ss_pred CceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCC---CC-------CchhhcCCCCCCEEeccCCcCCCcCc
Q 007628 16 RVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFC---GV-------VPSTFRRLKLLYEVDLSNNRFVGKFP 81 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~---~~-------lp~~~~~L~~L~~L~Ls~N~Lsg~lp 81 (595)
..++.+||++|.|... +.+.|.+-++|++.++++-... +. +..++.+|.+|+.++|++|-|....+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4566777777766533 3344555666666666654322 11 12234566777777777776664433
Q ss_pred ----hhcCCCCCCCEEEccCCCCC
Q 007628 82 ----KLFLSLPKLKYLDLRFNEFE 101 (595)
Q Consensus 82 ----~~l~~L~~L~~LdLs~N~l~ 101 (595)
+.+++-..|++|.|+||.+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC
Confidence 34455566777777777664
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.03 E-value=4.2e-12 Score=138.91 Aligned_cols=157 Identities=20% Similarity=0.313 Sum_probs=89.0
Q ss_pred chhcCCCCCCCEEEccCCCCCCCCCccc-cccCCCeeeccCC---------ccccCCCcccCCCCceeEEeeccCCCCCc
Q 007628 81 PKLFLSLPKLKYLDLRFNEFEGSVPSKL-FDKDLDAIFLNDN---------RFQFGIPENLGNSPVSVLVFANNDLGGCI 150 (595)
Q Consensus 81 p~~l~~L~~L~~LdLs~N~l~g~ip~~l-~~~~L~~L~L~~N---------~l~~~~p~~l~~~~L~~L~L~~N~l~~~i 150 (595)
+-.|..+++|+.|.|.++.|.. .-... +...|++|...+. ...|++-..+....|...+++.|++. .+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hH
Confidence 4456667778888887777653 11111 1133444432211 11133333333345666677777765 23
Q ss_pred CcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCC-CcCCCCCccEEEccCCcCCCCCchhccC
Q 007628 151 PGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPS-SIGNMKSLEQLNVAHNRFTGVIPSSVCQ 229 (595)
Q Consensus 151 p~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~-~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~ 229 (595)
..++.-+ ..|+.|+|++|+++.+. .+..|.+|++|||++|.|+ .++. .+..++ |..|+|+||.|+.. ..+.+
T Consensus 180 D~SLqll-~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 180 DESLQLL-PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred HHHHHHH-HHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence 3333333 66777777777777553 6666777777777777776 3333 233333 77777777777633 45666
Q ss_pred CCCCcEEEcccccCCCC
Q 007628 230 LPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 230 l~~L~~L~Ls~N~Lsg~ 246 (595)
|.+|+.|||++|.|.+.
T Consensus 253 LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred hhhhhccchhHhhhhcc
Confidence 77777777777766653
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.99 E-value=3.2e-12 Score=139.83 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=65.5
Q ss_pred ceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEcc
Q 007628 136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVA 215 (595)
Q Consensus 136 L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls 215 (595)
|+.|+|++|+|+.+- .|..+ ..|++|||++|.++..---....|+ |+.|+|++|.|+.. ..|.+|++|+.|||+
T Consensus 189 le~LnLshNk~~~v~--~Lr~l-~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVD--NLRRL-PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLS 262 (1096)
T ss_pred hhhhccchhhhhhhH--HHHhc-ccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchh
Confidence 344444444444322 44444 5677777777777643322333343 88888888887632 346677888888888
Q ss_pred CCcCCCCC-chhccCCCCCcEEEcccccCCCCCC
Q 007628 216 HNRFTGVI-PSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 216 ~N~Lsg~i-P~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
+|-|.+-- -.-++.|..|++|+|.+|-|.+...
T Consensus 263 yNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 263 YNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred HhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 88776531 1345666777888888887776543
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.98 E-value=4.1e-11 Score=118.34 Aligned_cols=221 Identities=19% Similarity=0.223 Sum_probs=151.3
Q ss_pred CCCCCCchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCC---Cc-------CchhcCCCCCCCE
Q 007628 27 DIAGYLPPEIGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFV---GK-------FPKLFLSLPKLKY 92 (595)
Q Consensus 27 ~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Ls---g~-------lp~~l~~L~~L~~ 92 (595)
++.+. -+.+..+..++.+||++|-|..+ +...|.+-.+|+..++++-... .. +-..+.+|.+|+.
T Consensus 18 Dvk~v-~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 18 DVKGV-VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred hhhHH-HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 34443 34566689999999999999754 4455677789999988875332 11 2345678999999
Q ss_pred EEccCCCCCCCCCccccc-----cCCCeeeccCCccccC----CCccc----------CCCCceeEEeeccCCCCCcCcc
Q 007628 93 LDLRFNEFEGSVPSKLFD-----KDLDAIFLNDNRFQFG----IPENL----------GNSPVSVLVFANNDLGGCIPGS 153 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~-----~~L~~L~L~~N~l~~~----~p~~l----------~~~~L~~L~L~~N~l~~~ip~~ 153 (595)
+|||+|.|.-.++..+.. ..|++|.|++|.+.-. +...+ ....|+.+.+..|+|...-...
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 999999998777766544 6899999999987522 22111 1246888999999987433322
Q ss_pred cccc---cchhhHHHhhccccCCC-----CCCccCCCccceEEeccCccccCC----CCCCcCCCCCccEEEccCCcCCC
Q 007628 154 IGKM---GKTLNEIILMNDNLTGC-----LPPQIGMLKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHNRFTG 221 (595)
Q Consensus 154 l~~l---~~~L~~L~Ls~N~l~g~-----ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l~~L~~L~~L~Ls~N~Lsg 221 (595)
+..+ -..|+++.+..|.|.-. +-..+..+.+|++|||++|.|+-. +-.+++....|++|.|.+|.|+.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 2221 13677788888887633 112344578999999999998732 34456666778999999999875
Q ss_pred CCch----hcc--CCCCCcEEEcccccCCCCCC
Q 007628 222 VIPS----SVC--QLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 222 ~iP~----~l~--~l~~L~~L~Ls~N~Lsg~~p 248 (595)
.--+ .|. ...+|..|-+.+|.+.|.+-
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 3222 222 24678888899998877544
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.9e-10 Score=113.76 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=40.2
Q ss_pred CCCCCceeEEEccCCCCCCCCc-hhh-cCCCCCcEEEccCCcCCC--CCchhhcCCCCCCEEeccCCcCCCcCchhcCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLP-PEI-GRLTDLAIFHINSNRFCG--VVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSL 87 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp-~~~-~~L~~L~~L~Ls~N~l~~--~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L 87 (595)
...++.++.|.|.+++|..+-. ..| ..++++++|||.+|.|++ ++-..+.+|..|++|+|+.|.|...|...=..+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 3344444455555554443210 111 134445555555555553 233334455555555555555553332221334
Q ss_pred CCCCEEEccCCCCC
Q 007628 88 PKLKYLDLRFNEFE 101 (595)
Q Consensus 88 ~~L~~LdLs~N~l~ 101 (595)
++|++|.|.+..|.
T Consensus 121 ~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLS 134 (418)
T ss_pred cceEEEEEcCCCCC
Confidence 45555555555444
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=7.5e-10 Score=105.66 Aligned_cols=83 Identities=25% Similarity=0.341 Sum_probs=29.1
Q ss_pred CCceeEEEccCCCCCCCCchhhc-CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIG-RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~-~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
...++.|+|++|+|+.+ +.++ .+.+|+.|||++|+|+.+ +.|..|.+|++|+|++|+|+.+.......|.+|++|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34578999999999975 3565 688999999999999965 368889999999999999995433333468999999
Q ss_pred EccCCCCC
Q 007628 94 DLRFNEFE 101 (595)
Q Consensus 94 dLs~N~l~ 101 (595)
+|++|+|.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 99999997
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.4e-11 Score=123.04 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=45.2
Q ss_pred eeEEEccCCCCCCC-CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-CCCc-CchhcCCCCCCCEEE
Q 007628 18 VASIDLNHADIAGY-LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-FVGK-FPKLFLSLPKLKYLD 94 (595)
Q Consensus 18 L~~LdLs~n~i~~~-lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-Lsg~-lp~~l~~L~~L~~Ld 94 (595)
|+.|||++..|+.. +-.-+..|.+|+.|.|.++++.+.+-.++++..+|+.|+|+.+. |+.. +--.|.+|+.|++|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 55566665555422 22233455566666666666666566666666666666665532 3311 112345556666666
Q ss_pred ccCCCCCCC
Q 007628 95 LRFNEFEGS 103 (595)
Q Consensus 95 Ls~N~l~g~ 103 (595)
|+++.+...
T Consensus 267 lsWc~l~~~ 275 (419)
T KOG2120|consen 267 LSWCFLFTE 275 (419)
T ss_pred chHhhccch
Confidence 666555433
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.2e-09 Score=85.73 Aligned_cols=60 Identities=35% Similarity=0.617 Sum_probs=39.8
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCC
Q 007628 41 DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEF 100 (595)
Q Consensus 41 ~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l 100 (595)
+|++|+|++|+|+.+..+.|.++.+|++|+|++|+|+.+..+.|.+|.+|++|+|++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466666666666655556666666677777776666655556666777777777776654
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.6e-09 Score=83.85 Aligned_cols=61 Identities=34% Similarity=0.538 Sum_probs=51.8
Q ss_pred ccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243 (595)
Q Consensus 183 ~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L 243 (595)
.+|++|+|++|+|+....+.|..+.+|++|+|++|+|++...+.|.++.+|+.|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3688899999998866667888899999999999999877778889999999999998875
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=6.1e-09 Score=121.97 Aligned_cols=229 Identities=18% Similarity=0.224 Sum_probs=139.1
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~ 91 (595)
|..|..|++|||++|.--+.++..|++|.+||+|+|++..|. .++..|++|..|.+|+|..+.....+...+..|.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 567899999999998766779999999999999999999999 7999999999999999999886666677788899999
Q ss_pred EEEccCCCCCC--CCCccccc-cCCCeeeccCCcc--------------------------ccCCCcccCCCCceeEEee
Q 007628 92 YLDLRFNEFEG--SVPSKLFD-KDLDAIFLNDNRF--------------------------QFGIPENLGNSPVSVLVFA 142 (595)
Q Consensus 92 ~LdLs~N~l~g--~ip~~l~~-~~L~~L~L~~N~l--------------------------~~~~p~~l~~~~L~~L~L~ 142 (595)
+|.|-...+.. ..-..+.. ..|+.|....... ...+.......+|+.|.+.
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSIL 725 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEE
Confidence 99997655221 11111111 2233322221111 1111111222456666666
Q ss_pred ccCCCCCcCcccccc-----cchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCC
Q 007628 143 NNDLGGCIPGSIGKM-----GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHN 217 (595)
Q Consensus 143 ~N~l~~~ip~~l~~l-----~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N 217 (595)
++.+....-...... ..++..+...++... ....+.....+|+.|+|.++.+...+-.....+..++++.+..+
T Consensus 726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred cCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence 666543322221111 012222222222222 12222233467777777777766555555566666666666677
Q ss_pred cCCCC-CchhccCCCCCcEEEccccc
Q 007628 218 RFTGV-IPSSVCQLPNLQNFTYSFNY 242 (595)
Q Consensus 218 ~Lsg~-iP~~l~~l~~L~~L~Ls~N~ 242 (595)
.+.+. .-..++++.++.++.+.+=.
T Consensus 805 ~~~~l~~~~~l~~l~~i~~~~l~~~~ 830 (889)
T KOG4658|consen 805 KLEGLRMLCSLGGLPQLYWLPLSFLK 830 (889)
T ss_pred ccccceeeecCCCCceeEecccCccc
Confidence 76665 34555555555555555444
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=8.5e-11 Score=117.51 Aligned_cols=223 Identities=18% Similarity=0.171 Sum_probs=139.9
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCC--CCcEEEccCCcCCCC-CchhhcCC-CCCCEEeccCCcCCC-cCchhcCCCCC
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLT--DLAIFHINSNRFCGV-VPSTFRRL-KLLYEVDLSNNRFVG-KFPKLFLSLPK 89 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~--~L~~L~Ls~N~l~~~-lp~~~~~L-~~L~~L~Ls~N~Lsg-~lp~~l~~L~~ 89 (595)
-+.+++|||.+-+|... .++.+. .+.++.|....+... +.+.|.-+ +.|++|||++..|+. .+-..++.|.+
T Consensus 135 e~lW~~lDl~~r~i~p~---~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 135 ESLWQTLDLTGRNIHPD---VLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSK 211 (419)
T ss_pred ccceeeeccCCCccChh---HHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHh
Confidence 36799999999888754 344333 344455544333332 22222222 458888888888762 23456677888
Q ss_pred CCEEEccCCCCCCCCCccccc-cCCCeeeccCCc-cccCCCccc--CCCCceeEEeeccCCCCCc-CcccccccchhhHH
Q 007628 90 LKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNR-FQFGIPENL--GNSPVSVLVFANNDLGGCI-PGSIGKMGKTLNEI 164 (595)
Q Consensus 90 L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~-l~~~~p~~l--~~~~L~~L~L~~N~l~~~i-p~~l~~l~~~L~~L 164 (595)
|+.|.|.+++|.+.|...+.. .+|+.|+|+.+. |+..-...+ ....|+.|+|+.+.+...+ -..+.....+|+.|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 888888888888777666655 678888887653 321111111 1256777888877655432 23334445678888
Q ss_pred HhhccccC---CCCCCccCCCccceEEeccCcc-ccCCCCCCcCCCCCccEEEccCCcCCCCCchh---ccCCCCCcEEE
Q 007628 165 ILMNDNLT---GCLPPQIGMLKNLTVFDVSFNH-LQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSS---VCQLPNLQNFT 237 (595)
Q Consensus 165 ~Ls~N~l~---g~ip~~~~~L~~L~~LdLs~N~-L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~---l~~l~~L~~L~ 237 (595)
+|++..-. ..+..-...+.+|.+|||++|. |+...-.+|.++..|++|.|+.|-. .++.. |..+.+|.+||
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLD 369 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEE
Confidence 88875322 2222334567889999999875 4545556677888899998888764 34444 45567788888
Q ss_pred ccccc
Q 007628 238 YSFNY 242 (595)
Q Consensus 238 Ls~N~ 242 (595)
+-+.-
T Consensus 370 v~g~v 374 (419)
T KOG2120|consen 370 VFGCV 374 (419)
T ss_pred ecccc
Confidence 77653
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.1e-09 Score=109.50 Aligned_cols=183 Identities=16% Similarity=0.100 Sum_probs=109.4
Q ss_pred CCCceeEEEccCCCCCCC--CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc-CchhcCCCCCC
Q 007628 14 SLRVVASIDLNHADIAGY--LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK-FPKLFLSLPKL 90 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~--lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~-lp~~l~~L~~L 90 (595)
+.+.|+.|||.+|.|++- +..-+.+|..|++|+|+.|.+...|...=..+.+|+.|.|++..|.-. .-..+..+.++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 456799999999999852 233356899999999999999976655446789999999999988743 34466778899
Q ss_pred CEEEccCCCCCCC-CCccccc---cCCCeeeccCCccccCC---CcccCCCCceeEEeeccCCCCCcCcccccccchhhH
Q 007628 91 KYLDLRFNEFEGS-VPSKLFD---KDLDAIFLNDNRFQFGI---PENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNE 163 (595)
Q Consensus 91 ~~LdLs~N~l~g~-ip~~l~~---~~L~~L~L~~N~l~~~~---p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~ 163 (595)
++|.+|.|++.-. +.+.... ..+++|++..|.++--. --.--..++..+.+..|-+...-...-++-...+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999999965421 1111111 24555555444332000 000001345555666665443322221111144556
Q ss_pred HHhhccccCCC-CCCccCCCccceEEeccCcccc
Q 007628 164 IILMNDNLTGC-LPPQIGMLKNLTVFDVSFNHLQ 196 (595)
Q Consensus 164 L~Ls~N~l~g~-ip~~~~~L~~L~~LdLs~N~L~ 196 (595)
|+|+.|+|... --+++.++..|..|.+++|-|.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 66666666522 1234555666666666666554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.48 E-value=2.1e-08 Score=90.23 Aligned_cols=132 Identities=18% Similarity=0.220 Sum_probs=73.6
Q ss_pred CceeEEEccCCCCCCC--CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 16 RVVASIDLNHADIAGY--LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~--lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
..+..+||+.++|-.+ ....+.+..+|..++|++|.|...-...-..+..++.|+|++|+|+ .+++.|..+..|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3455666666655421 1122334455666677777776433333344556777777777777 556667777777777
Q ss_pred EccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCC
Q 007628 94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGC 149 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ 149 (595)
+|++|.|. ..+..++. .+|..|+..+|.+...--+.+....+..+++.++.+.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccccc
Confidence 77777776 44444443 566666666666553322322223333344555555543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.43 E-value=2.5e-08 Score=89.80 Aligned_cols=106 Identities=24% Similarity=0.302 Sum_probs=70.8
Q ss_pred CCCCCcEEEccCCcCCCCCchh---hcCCCCCCEEeccCCcCCCcCchhc-CCCCCCCEEEccCCCCCCCCCccccc-cC
Q 007628 38 RLTDLAIFHINSNRFCGVVPST---FRRLKLLYEVDLSNNRFVGKFPKLF-LSLPKLKYLDLRFNEFEGSVPSKLFD-KD 112 (595)
Q Consensus 38 ~L~~L~~L~Ls~N~l~~~lp~~---~~~L~~L~~L~Ls~N~Lsg~lp~~l-~~L~~L~~LdLs~N~l~g~ip~~l~~-~~ 112 (595)
+-..+..|||++|.|. .+.+. +.+...|+.++|++|.|. .++..| .++..+++|+|++|+|+ +++..+.. ..
T Consensus 25 dakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a 101 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA 101 (177)
T ss_pred HHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH
Confidence 3455778899999876 45554 455566777899999998 455544 44568899999999998 67766544 77
Q ss_pred CCeeeccCCccccCCCcccCCCCceeEEeeccCC
Q 007628 113 LDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDL 146 (595)
Q Consensus 113 L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l 146 (595)
|+.|+++.|.|....-..+.+.++..|+..+|.+
T Consensus 102 Lr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 102 LRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 8888888888764333333333444444444443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=1.9e-06 Score=91.99 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=18.5
Q ss_pred ccceEEeccCccccCCCCCCcCCCCCccEEEccCC
Q 007628 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHN 217 (595)
Q Consensus 183 ~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N 217 (595)
.+|++|+|++|.+. .+++.+- .+|+.|++++|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 46777777766654 3333333 36666776655
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.21 E-value=1.7e-06 Score=82.91 Aligned_cols=82 Identities=23% Similarity=0.221 Sum_probs=44.5
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCC--CCccccccCCCeeec
Q 007628 41 DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGS--VPSKLFDKDLDAIFL 118 (595)
Q Consensus 41 ~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~--ip~~l~~~~L~~L~L 118 (595)
+...|||++|+|..+ ..|-.+.+|.+|.|++|+|+.+.+..-..+.+|+.|.|.+|+|... +........|++|.|
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455666666666532 3456666666666666666644444334455566666666666521 111111245666666
Q ss_pred cCCccc
Q 007628 119 NDNRFQ 124 (595)
Q Consensus 119 ~~N~l~ 124 (595)
-+|..+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 666554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=4.7e-06 Score=79.89 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=65.3
Q ss_pred CCcEEEccCCcCCCCCchhhc-CCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc--cCCCeee
Q 007628 41 DLAIFHINSNRFCGVVPSTFR-RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIF 117 (595)
Q Consensus 41 ~L~~L~Ls~N~l~~~lp~~~~-~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--~~L~~L~ 117 (595)
.-+.++|++.+|..+ . .++ -+.+...+||++|.|.. -..|-.+..|.+|.|++|+|+ .|...+.. .+|+.|.
T Consensus 20 ~e~e~~LR~lkip~i-e-nlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 20 RERELDLRGLKIPVI-E-NLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLI 94 (233)
T ss_pred cccccccccccccch-h-hccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEE
Confidence 356777777776632 1 132 24677889999998872 246778899999999999998 55555544 5688888
Q ss_pred ccCCccc--cCCCcccCCCCceeEEeeccCCC
Q 007628 118 LNDNRFQ--FGIPENLGNSPVSVLVFANNDLG 147 (595)
Q Consensus 118 L~~N~l~--~~~p~~l~~~~L~~L~L~~N~l~ 147 (595)
|.+|.+. |++........|++|.+-+|.++
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 8888775 22222223334555555555443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=6.1e-06 Score=88.25 Aligned_cols=135 Identities=14% Similarity=0.214 Sum_probs=68.7
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCC-cCCCcCchhcCCCCCCCEEEccCC-CCCCCCCccccccCC
Q 007628 36 IGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN-RFVGKFPKLFLSLPKLKYLDLRFN-EFEGSVPSKLFDKDL 113 (595)
Q Consensus 36 ~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N-~Lsg~lp~~l~~L~~L~~LdLs~N-~l~g~ip~~l~~~~L 113 (595)
+..+.+++.|+|++|.|+. ++ ..-.+|++|+|+++ +|+ .+++.+ ..+|++|+|++| +|. .++ ..|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP-----~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLP-----ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccc-----ccc
Confidence 3446777777777777663 33 12345777777763 333 445444 246777777776 443 333 345
Q ss_pred CeeeccCCccc--cCCCcccCCCCceeEEeeccCCCCCcCcccc-cccchhhHHHhhccccCCCCCCccCCCccceEEec
Q 007628 114 DAIFLNDNRFQ--FGIPENLGNSPVSVLVFANNDLGGCIPGSIG-KMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDV 190 (595)
Q Consensus 114 ~~L~L~~N~l~--~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~-~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdL 190 (595)
+.|+|..|.+. +.++. .|+.|.+.+++.. ....+. .+..+|++|++.+|... .++..+- .+|+.|++
T Consensus 115 e~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN-----GLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcccccCcc-----hHhheeccccccc--cccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 66666554432 12222 3444555332211 001111 12346677777666544 2333222 46777777
Q ss_pred cCc
Q 007628 191 SFN 193 (595)
Q Consensus 191 s~N 193 (595)
++|
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 665
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=1e-06 Score=101.05 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=74.3
Q ss_pred CCCCEEEccCCCCC-CCCCccccc--cCCCeeeccCCccccCC-Cccc-CCCCceeEEeeccCCCCCcCcccccccchhh
Q 007628 88 PKLKYLDLRFNEFE-GSVPSKLFD--KDLDAIFLNDNRFQFGI-PENL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLN 162 (595)
Q Consensus 88 ~~L~~LdLs~N~l~-g~ip~~l~~--~~L~~L~L~~N~l~~~~-p~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~ 162 (595)
.+|++|||++...- ......+.. ..|+.|.+.+-.|...- -..+ ...+|..||+++.+++.. .++.++ ++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L-knLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL-KNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcc-ccHH
Confidence 45777777664322 111111111 56666666655543221 0111 124677777777777644 566666 7788
Q ss_pred HHHhhccccCC-CCCCccCCCccceEEeccCccccCCC------CCCcCCCCCccEEEccCCcCCCCC
Q 007628 163 EIILMNDNLTG-CLPPQIGMLKNLTVFDVSFNHLQGSL------PSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 163 ~L~Ls~N~l~g-~ip~~~~~L~~L~~LdLs~N~L~g~l------P~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
+|.+.+-.+.. ..-.++.+|++|++||+|........ -+.-..|.+|+.||.+++.+.+.+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 88887766653 23345667788888888776543211 111233667777777777776544
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.6e-05 Score=58.14 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=18.8
Q ss_pred CCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628 65 LLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE 101 (595)
Q Consensus 65 ~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~ 101 (595)
+|++|+|++|+|+ .++..|++|.+|++|||++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=7.4e-07 Score=102.20 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=83.1
Q ss_pred cCCCeeeccCCccc-cCCCcccC--CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceE
Q 007628 111 KDLDAIFLNDNRFQ-FGIPENLG--NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTV 187 (595)
Q Consensus 111 ~~L~~L~L~~N~l~-~~~p~~l~--~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~ 187 (595)
.+|++|++++.... ..-...++ ...|+.|.+.+-.|...--..++.-..+|..||+++.+++.. ..+++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 57888888775432 11111122 245777777765554322222233336788888888877743 56777888888
Q ss_pred EeccCccccC-CCCCCcCCCCCccEEEccCCcCCCCC--c----hhccCCCCCcEEEcccccCCCCCCccc
Q 007628 188 FDVSFNHLQG-SLPSSIGNMKSLEQLNVAHNRFTGVI--P----SSVCQLPNLQNFTYSFNYFTGEPPSCT 251 (595)
Q Consensus 188 LdLs~N~L~g-~lP~~l~~L~~L~~L~Ls~N~Lsg~i--P----~~l~~l~~L~~L~Ls~N~Lsg~~p~~~ 251 (595)
|.+.+=.+.. ..-..+.+|++|+.||+|..+..... . +....|.+|+.||.+++.+++.+-+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 8777766642 22234667888888888876654321 1 122346788888888777776655443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.8e-05 Score=56.84 Aligned_cols=36 Identities=36% Similarity=0.638 Sum_probs=17.5
Q ss_pred cceEEeccCccccCCCCCCcCCCCCccEEEccCCcCC
Q 007628 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT 220 (595)
Q Consensus 184 ~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Ls 220 (595)
+|++|+|++|+|+ .++..|++|.+|++|+|++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 61
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.76 E-value=1.4e-07 Score=103.76 Aligned_cols=180 Identities=19% Similarity=0.193 Sum_probs=96.4
Q ss_pred CcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCcC----chhcCCC-CCCCEEEccCCCCCCCCCccccc--
Q 007628 42 LAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGKF----PKLFLSL-PKLKYLDLRFNEFEGSVPSKLFD-- 110 (595)
Q Consensus 42 L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~l----p~~l~~L-~~L~~LdLs~N~l~g~ip~~l~~-- 110 (595)
|..|+|.+|.|... +-..+..+.+|..|+|++|.|.+.- -..+... ..|++|++..|.+++..-..+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666666666543 2233455566666666666666321 1222222 44566666666665433322221
Q ss_pred ---cCCCeeeccCCccccC----CCcc-----cCCCCceeEEeeccCCCCCcC----cccccccchhhHHHhhccccCCC
Q 007628 111 ---KDLDAIFLNDNRFQFG----IPEN-----LGNSPVSVLVFANNDLGGCIP----GSIGKMGKTLNEIILMNDNLTGC 174 (595)
Q Consensus 111 ---~~L~~L~L~~N~l~~~----~p~~-----l~~~~L~~L~L~~N~l~~~ip----~~l~~l~~~L~~L~Ls~N~l~g~ 174 (595)
..|+.|++..|.+... +... ....+++.|+|.+|.++...- ..+......+.+|++.+|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 3455566666655310 0111 123457777777777663221 12222222266688888877633
Q ss_pred ----CCCccCCC-ccceEEeccCccccCCCC----CCcCCCCCccEEEccCCcCCC
Q 007628 175 ----LPPQIGML-KNLTVFDVSFNHLQGSLP----SSIGNMKSLEQLNVAHNRFTG 221 (595)
Q Consensus 175 ----ip~~~~~L-~~L~~LdLs~N~L~g~lP----~~l~~L~~L~~L~Ls~N~Lsg 221 (595)
+...+..+ .+|++|||+.|.|+.... +.+..+.+|++|.|++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 12234444 567888888888864433 344556778888888888764
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.64 E-value=1.4e-06 Score=91.37 Aligned_cols=228 Identities=15% Similarity=0.090 Sum_probs=113.8
Q ss_pred ceeEEEccCCCCCCC--CchhhcCCCCCcEEEccCCc-CCCCCchhh-cCCCCCCEEeccC-CcCCCcCc-hhcCCCCCC
Q 007628 17 VVASIDLNHADIAGY--LPPEIGRLTDLAIFHINSNR-FCGVVPSTF-RRLKLLYEVDLSN-NRFVGKFP-KLFLSLPKL 90 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~--lp~~~~~L~~L~~L~Ls~N~-l~~~lp~~~-~~L~~L~~L~Ls~-N~Lsg~lp-~~l~~L~~L 90 (595)
.|+.|.|+++.-.+. +.....++.+++.|+|.++. |++..-.+| ..+.+|+.|+|.. -.|+...- +....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566777776643222 22334567778888777775 333222223 4578888888887 34443322 244568888
Q ss_pred CEEEccCC-CCCCCCCccccc--cCCCeeeccCCccccC-CCccc--CCCCceeEEeecc-CCCCCcCcccccccchhhH
Q 007628 91 KYLDLRFN-EFEGSVPSKLFD--KDLDAIFLNDNRFQFG-IPENL--GNSPVSVLVFANN-DLGGCIPGSIGKMGKTLNE 163 (595)
Q Consensus 91 ~~LdLs~N-~l~g~ip~~l~~--~~L~~L~L~~N~l~~~-~p~~l--~~~~L~~L~L~~N-~l~~~ip~~l~~l~~~L~~ 163 (595)
++|+|+++ .|+|.--..++. ..|+.+.+.++.-.+. .-..+ ....+..|++.++ .++..---.+......|++
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 89988876 454422222322 3345554443221100 00000 1122344444443 2332222223333356777
Q ss_pred HHhhccccCC-CCCCcc-CCCccceEEeccCcc-ccCCCCCCc-CCCCCccEEEccCCcCC--CCCchhccCCCCCcEEE
Q 007628 164 IILMNDNLTG-CLPPQI-GMLKNLTVFDVSFNH-LQGSLPSSI-GNMKSLEQLNVAHNRFT--GVIPSSVCQLPNLQNFT 237 (595)
Q Consensus 164 L~Ls~N~l~g-~ip~~~-~~L~~L~~LdLs~N~-L~g~lP~~l-~~L~~L~~L~Ls~N~Ls--g~iP~~l~~l~~L~~L~ 237 (595)
|+.++....+ ..-.++ .++.+|++|.|..++ |+..--..+ .++..|+.|++..+.+. +++...-.++..|++|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 7777654322 111222 235678888877775 332222222 34566777777766543 12222234456677777
Q ss_pred cccccCC
Q 007628 238 YSFNYFT 244 (595)
Q Consensus 238 Ls~N~Ls 244 (595)
|+++.+.
T Consensus 379 lshce~i 385 (483)
T KOG4341|consen 379 LSHCELI 385 (483)
T ss_pred hhhhhhh
Confidence 7766543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.58 E-value=2.2e-05 Score=78.22 Aligned_cols=68 Identities=25% Similarity=0.377 Sum_probs=37.8
Q ss_pred CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCC--cCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628 32 LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN--RFVGKFPKLFLSLPKLKYLDLRFNEFE 101 (595)
Q Consensus 32 lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N--~Lsg~lp~~l~~L~~L~~LdLs~N~l~ 101 (595)
+...+..+..|+.|.+.+..++.+ ..|-.|.+|++|+|+.| ++++.+.....++.+|++|+|++|+|.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334444555555555555555532 23445566666666666 455445444555566666666666665
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.54 E-value=0.00014 Score=65.14 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=44.4
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
.+..+|+.+++.+ ++..+....|.++.+|+.|++.++ +..+...+|.++.+|+.|++.+ .+.......|.++.+|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3445666777764 466655666777777777777664 5555566677776777777765 343334456666777777
Q ss_pred EEccCC
Q 007628 93 LDLRFN 98 (595)
Q Consensus 93 LdLs~N 98 (595)
+++..|
T Consensus 86 i~~~~~ 91 (129)
T PF13306_consen 86 IDIPSN 91 (129)
T ss_dssp EEETTT
T ss_pred cccCcc
Confidence 777554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.54 E-value=0.00017 Score=64.58 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=52.5
Q ss_pred hhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc--c
Q 007628 34 PEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--K 111 (595)
Q Consensus 34 ~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--~ 111 (595)
..|.++.+|+.+.+.+ .+..+...+|.++.+|+.|++.++ +..+-...|.++.+|+.|++.+ .+. .+....+. .
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 5688899999999985 577677788999999999999886 7756667888998899999976 443 33344443 5
Q ss_pred CCCeeeccCC
Q 007628 112 DLDAIFLNDN 121 (595)
Q Consensus 112 ~L~~L~L~~N 121 (595)
+|+.+++..+
T Consensus 82 ~l~~i~~~~~ 91 (129)
T PF13306_consen 82 NLKNIDIPSN 91 (129)
T ss_dssp TECEEEETTT
T ss_pred cccccccCcc
Confidence 6666666544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=7.9e-06 Score=81.76 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=79.1
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCc-hhcCCCCCCC
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP-KLFLSLPKLK 91 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp-~~l~~L~~L~ 91 (595)
..|.+++.|++-+++|+++ ..+.+|..|++|.|+-|+|+.+ +.|.+|++|++|+|..|.|..+.. ..|.+|.+|+
T Consensus 16 sdl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred hHHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 5678899999999999876 3456899999999999999854 568999999999999999984421 3578899999
Q ss_pred EEEccCCCCCCCCCccccc------cCCCeee
Q 007628 92 YLDLRFNEFEGSVPSKLFD------KDLDAIF 117 (595)
Q Consensus 92 ~LdLs~N~l~g~ip~~l~~------~~L~~L~ 117 (595)
.|.|..|--.|......-. .+|++||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999877655543321 5666665
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00015 Score=72.27 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=59.8
Q ss_pred CCceeEEeeccCCCCCcCcccccccchhhHHHhhcc--ccCCCCCCccCCCccceEEeccCccccC-CCCCCcCCCCCcc
Q 007628 134 SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMND--NLTGCLPPQIGMLKNLTVFDVSFNHLQG-SLPSSIGNMKSLE 210 (595)
Q Consensus 134 ~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N--~l~g~ip~~~~~L~~L~~LdLs~N~L~g-~lP~~l~~L~~L~ 210 (595)
..|+.|++.+.+++.. ..|-.| .+|++|.++.| ++.+.+.-....+.+|++|+|++|+|.. .--..+..+.+|.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~L-p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKL-PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeec--ccCCCc-chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3455555555555422 122233 57888888888 5555554445556788888888888762 1112345667777
Q ss_pred EEEccCCcCCCCC---chhccCCCCCcEEEc
Q 007628 211 QLNVAHNRFTGVI---PSSVCQLPNLQNFTY 238 (595)
Q Consensus 211 ~L~Ls~N~Lsg~i---P~~l~~l~~L~~L~L 238 (595)
.|+|.+|..++.. -..|.-|.+|+.||.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 8888887766532 124555566666543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=2.2e-05 Score=78.66 Aligned_cols=60 Identities=23% Similarity=0.219 Sum_probs=46.3
Q ss_pred CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628 38 RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE 101 (595)
Q Consensus 38 ~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~ 101 (595)
+|.+++.|++.++.|.++ ....++..|++|.|+-|+|+.. ..|..|++|++|+|..|.|.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 466777888888888754 3456788888888888888844 34777888888888888887
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.10 E-value=2.8e-05 Score=81.74 Aligned_cols=228 Identities=16% Similarity=0.085 Sum_probs=111.5
Q ss_pred CCCceeEEEccCCC-CCCCCchhh-cCCCCCcEEEccCC-cCCCCCch-hhcCCCCCCEEeccCCc-CCCc-CchhcCCC
Q 007628 14 SLRVVASIDLNHAD-IAGYLPPEI-GRLTDLAIFHINSN-RFCGVVPS-TFRRLKLLYEVDLSNNR-FVGK-FPKLFLSL 87 (595)
Q Consensus 14 ~l~~L~~LdLs~n~-i~~~lp~~~-~~L~~L~~L~Ls~N-~l~~~lp~-~~~~L~~L~~L~Ls~N~-Lsg~-lp~~l~~L 87 (595)
...+++.|+|.++. |++..-..+ .++.+|+.|+|..+ .|+...-. ....+.+|++|+|+.+. |++. +-..+.++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 34566666666664 444433333 36888888888883 45544333 33567888888887653 3321 11223344
Q ss_pred CCCCEEEccC--------------------------CCCCCCCCccccc---cCCCeeeccCCccccC-CCcccC--CCC
Q 007628 88 PKLKYLDLRF--------------------------NEFEGSVPSKLFD---KDLDAIFLNDNRFQFG-IPENLG--NSP 135 (595)
Q Consensus 88 ~~L~~LdLs~--------------------------N~l~g~ip~~l~~---~~L~~L~L~~N~l~~~-~p~~l~--~~~ 135 (595)
++|+.+.+.+ +........+... ..|+.|..+++...+. +-..++ ..+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 4444443332 2111011100000 2344444444332211 111121 245
Q ss_pred ceeEEeeccC-CCCCcCcccccccchhhHHHhhccccC--CCCCCccCCCccceEEeccCccccCCC-----CCCcCCCC
Q 007628 136 VSVLVFANND-LGGCIPGSIGKMGKTLNEIILMNDNLT--GCLPPQIGMLKNLTVFDVSFNHLQGSL-----PSSIGNMK 207 (595)
Q Consensus 136 L~~L~L~~N~-l~~~ip~~l~~l~~~L~~L~Ls~N~l~--g~ip~~~~~L~~L~~LdLs~N~L~g~l-----P~~l~~L~ 207 (595)
|++|.|..++ |+..--..++.....|+.|++....+. +.+...-.++..|++|.|+++.+.... ...-..+.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 6666666554 333333344444456666666665433 222222234567777777776553111 22234556
Q ss_pred CccEEEccCCcCC-CCCchhccCCCCCcEEEcccc
Q 007628 208 SLEQLNVAHNRFT-GVIPSSVCQLPNLQNFTYSFN 241 (595)
Q Consensus 208 ~L~~L~Ls~N~Ls-g~iP~~l~~l~~L~~L~Ls~N 241 (595)
.|+.|.|+++.++ ...-+.+..+.+|+.++|-..
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 6777777776653 222344555666666666554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.09 E-value=9.1e-05 Score=81.27 Aligned_cols=61 Identities=21% Similarity=0.040 Sum_probs=27.3
Q ss_pred CCCCcEEEccCCcCCCC--CchhhcCCCCCCEEeccCC-cCCCcC----chhcCCCCCCCEEEccCCC
Q 007628 39 LTDLAIFHINSNRFCGV--VPSTFRRLKLLYEVDLSNN-RFVGKF----PKLFLSLPKLKYLDLRFNE 99 (595)
Q Consensus 39 L~~L~~L~Ls~N~l~~~--lp~~~~~L~~L~~L~Ls~N-~Lsg~l----p~~l~~L~~L~~LdLs~N~ 99 (595)
+..|+.|.+.++.-... +-..+..+.+|+.|+|+++ ...... ......+.+|+.|||+++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 45555555555532222 2334455566666666542 110010 1122334556666666555
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.05 E-value=2.8e-06 Score=93.63 Aligned_cols=181 Identities=20% Similarity=0.233 Sum_probs=122.7
Q ss_pred CCEEeccCCcCCCc----CchhcCCCCCCCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCccc----
Q 007628 66 LYEVDLSNNRFVGK----FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENL---- 131 (595)
Q Consensus 66 L~~L~Ls~N~Lsg~----lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l---- 131 (595)
|..|+|.+|.|... +-..+..+..|+.|||++|.|.+.--..+.. ..|++|++..|.++......+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 88899999998854 3446677889999999999998433333322 346678888887775433222
Q ss_pred -CCCCceeEEeeccCCCC----CcCccccc---ccchhhHHHhhccccCCC----CCCccCCCcc-ceEEeccCccccCC
Q 007628 132 -GNSPVSVLVFANNDLGG----CIPGSIGK---MGKTLNEIILMNDNLTGC----LPPQIGMLKN-LTVFDVSFNHLQGS 198 (595)
Q Consensus 132 -~~~~L~~L~L~~N~l~~----~ip~~l~~---l~~~L~~L~Ls~N~l~g~----ip~~~~~L~~-L~~LdLs~N~L~g~ 198 (595)
.+..++++++..|.+.. .+...+.. ...++++|.|.+|.++.. +...+....+ +..|++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 23457778888888742 12222332 236789999999987732 2223444555 77799999998744
Q ss_pred ----CCCCcCCC-CCccEEEccCCcCCCC----CchhccCCCCCcEEEcccccCCCC
Q 007628 199 ----LPSSIGNM-KSLEQLNVAHNRFTGV----IPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 199 ----lP~~l~~L-~~L~~L~Ls~N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+...+..+ .+|++|+|+.|.|++. +.+.+..+.+|+.|.+++|.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 23334455 6789999999999764 445666778899999999998763
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=7.5e-05 Score=81.95 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=55.4
Q ss_pred CceeEEEccCCC-CCCC-CchhhcCCCCCcEEEccCC-cCCCC----CchhhcCCCCCCEEeccCCc-CCCcCchhcC-C
Q 007628 16 RVVASIDLNHAD-IAGY-LPPEIGRLTDLAIFHINSN-RFCGV----VPSTFRRLKLLYEVDLSNNR-FVGKFPKLFL-S 86 (595)
Q Consensus 16 ~~L~~LdLs~n~-i~~~-lp~~~~~L~~L~~L~Ls~N-~l~~~----lp~~~~~L~~L~~L~Ls~N~-Lsg~lp~~l~-~ 86 (595)
..|+.|.+.++. +... +-.....+.+|+.|+|+++ ..... .......+.+|+.|+|++.. ++...-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 445555555442 2221 2344556777777777762 11111 11233456777777777776 4433333333 2
Q ss_pred CCCCCEEEccCCC-CCCCCCccccc--cCCCeeeccCCcc
Q 007628 87 LPKLKYLDLRFNE-FEGSVPSKLFD--KDLDAIFLNDNRF 123 (595)
Q Consensus 87 L~~L~~LdLs~N~-l~g~ip~~l~~--~~L~~L~L~~N~l 123 (595)
+.+|++|.+.++. +++..-..+.. ..|++|+|+++..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 6777777766555 44222222222 4577777776554
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.73 E-value=5.5e-05 Score=74.06 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=26.3
Q ss_pred cCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccC
Q 007628 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG 197 (595)
Q Consensus 150 ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g 197 (595)
++.+++++ ..+..+++.+|+++ ..+.+++.+.+++.+++.+|.|..
T Consensus 80 ~~~d~~q~-~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 80 LPKDAKQQ-RETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ChhhHHHH-HHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence 34444444 45556666665555 455666666666666666665543
No 74
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=96.67 E-value=0.0026 Score=68.20 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=43.1
Q ss_pred chhhHHHhhccccCCCCCCccCC--CccceEEeccCccc---c--CCCCCCc----CCCCCccEEEccCCcCCCCCchh-
Q 007628 159 KTLNEIILMNDNLTGCLPPQIGM--LKNLTVFDVSFNHL---Q--GSLPSSI----GNMKSLEQLNVAHNRFTGVIPSS- 226 (595)
Q Consensus 159 ~~L~~L~Ls~N~l~g~ip~~~~~--L~~L~~LdLs~N~L---~--g~lP~~l----~~L~~L~~L~Ls~N~Lsg~iP~~- 226 (595)
..+++|++.+|++.|+.-..... -+.++.|++.+-.. . +.+-..+ ....-|..|.++.|.+...+-..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 34677777777766655443321 23455555543322 0 0000000 11123566777777776443332
Q ss_pred --ccCCCCCcEEEcccccCCC
Q 007628 227 --VCQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 227 --l~~l~~L~~L~Ls~N~Lsg 245 (595)
+..-..|+.||+++|.+..
T Consensus 434 n~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred HhhccCcccccccccCCCccc
Confidence 2333567777888776643
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.39 E-value=0.0001 Score=72.25 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=47.0
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
++.++.|||+.|++.. +...|..++.|..|||+.|+|. .++..++++..++.+++.+|+++ ..+..+.++..++++|
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3445556665555543 3344555555555666655555 45555555555666666655555 4555555666666666
Q ss_pred ccCCCCC
Q 007628 95 LRFNEFE 101 (595)
Q Consensus 95 Ls~N~l~ 101 (595)
+-.|.|.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6555544
No 76
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=95.89 E-value=0.032 Score=60.08 Aligned_cols=65 Identities=15% Similarity=0.010 Sum_probs=36.5
Q ss_pred cceEEeccCccccCCCCCCc--CCCCCccEEEccCCcC-----CCCCchhc----cCCCCCcEEEcccccCCCCCC
Q 007628 184 NLTVFDVSFNHLQGSLPSSI--GNMKSLEQLNVAHNRF-----TGVIPSSV----CQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 184 ~L~~LdLs~N~L~g~lP~~l--~~L~~L~~L~Ls~N~L-----sg~iP~~l----~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
++++|+++.|++.|++-... .+-+.++.|++..-.. .+++...+ ....-|..++++.|.+.....
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~ 430 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLE 430 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHH
Confidence 58999999999987765543 3345677777654322 11111111 112235667777776655443
No 77
>PHA03247 large tegument protein UL36; Provisional
Probab=95.60 E-value=11 Score=48.87 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=3.7
Q ss_pred ceEEeccCc
Q 007628 185 LTVFDVSFN 193 (595)
Q Consensus 185 L~~LdLs~N 193 (595)
|..||.+.+
T Consensus 2398 LvlvD~~m~ 2406 (3151)
T PHA03247 2398 LVLVDISMA 2406 (3151)
T ss_pred EEEEcCCCc
Confidence 344444433
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.05 E-value=0.0098 Score=36.55 Aligned_cols=19 Identities=47% Similarity=0.627 Sum_probs=9.5
Q ss_pred ceEEeccCccccCCCCCCcC
Q 007628 185 LTVFDVSFNHLQGSLPSSIG 204 (595)
Q Consensus 185 L~~LdLs~N~L~g~lP~~l~ 204 (595)
|++|||++|+|+ .++.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.68 E-value=0.014 Score=35.80 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=15.7
Q ss_pred CccEEEccCCcCCCCCchhccCC
Q 007628 208 SLEQLNVAHNRFTGVIPSSVCQL 230 (595)
Q Consensus 208 ~L~~L~Ls~N~Lsg~iP~~l~~l 230 (595)
+|++|||++|+|+ .++..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788888888888 676666543
No 80
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.19 E-value=11 Score=41.40 Aligned_cols=17 Identities=18% Similarity=0.036 Sum_probs=10.8
Q ss_pred CCCCCCEEEccCCCCCC
Q 007628 86 SLPKLKYLDLRFNEFEG 102 (595)
Q Consensus 86 ~L~~L~~LdLs~N~l~g 102 (595)
++-.|+..||.+|+|.|
T Consensus 75 rsyFlrl~di~~~rliW 91 (569)
T KOG3671|consen 75 RSYFLRLVDIVNNRLIW 91 (569)
T ss_pred ceeeeEEeeecCceeee
Confidence 34456777777777653
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=0.0086 Score=57.92 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=43.4
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcC-chhcCC-CCCCCEEEccCC-CCCCCCCccccc-cCCCe
Q 007628 40 TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF-PKLFLS-LPKLKYLDLRFN-EFEGSVPSKLFD-KDLDA 115 (595)
Q Consensus 40 ~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~l-p~~l~~-L~~L~~LdLs~N-~l~g~ip~~l~~-~~L~~ 115 (595)
..++.+|-++..|..+--+.|.+|+.|+.|.|.++.-.+-. -+.|.+ ..+|+.|+|++| +|+..--..+.. .+|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34666777777766666666666666666666665422110 111222 356777777755 444222222222 56666
Q ss_pred eeccCC
Q 007628 116 IFLNDN 121 (595)
Q Consensus 116 L~L~~N 121 (595)
|+|++-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 666543
No 82
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=93.73 E-value=0.03 Score=54.41 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=9.1
Q ss_pred CccEEEccCCcCCCC
Q 007628 208 SLEQLNVAHNRFTGV 222 (595)
Q Consensus 208 ~L~~L~Ls~N~Lsg~ 222 (595)
+|.--||++++|+|.
T Consensus 257 ~LaGadLencnlsG~ 271 (302)
T KOG1665|consen 257 NLAGADLENCNLSGA 271 (302)
T ss_pred cccCCccccCCCCCc
Confidence 345556677777664
No 83
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=92.92 E-value=0.056 Score=52.64 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=5.7
Q ss_pred CcEEEcccccCCC
Q 007628 233 LQNFTYSFNYFTG 245 (595)
Q Consensus 233 L~~L~Ls~N~Lsg 245 (595)
|.--||++++|+|
T Consensus 258 LaGadLencnlsG 270 (302)
T KOG1665|consen 258 LAGADLENCNLSG 270 (302)
T ss_pred ccCCccccCCCCC
Confidence 3333444444444
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=0.01 Score=57.35 Aligned_cols=84 Identities=12% Similarity=0.115 Sum_probs=47.3
Q ss_pred CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC-CCccCC-CccceEEeccCc-cccCCCCCCcCCCCC
Q 007628 132 GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL-PPQIGM-LKNLTVFDVSFN-HLQGSLPSSIGNMKS 208 (595)
Q Consensus 132 ~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i-p~~~~~-L~~L~~LdLs~N-~L~g~lP~~l~~L~~ 208 (595)
.+..++.++-++..|..+.-+.|.++ +.|+.|.+.++.-.+.. -+.++. ..+|+.|+|++| +|+..--..+..+++
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 34557777777777776666666666 66666666665422110 011222 356777777766 455333344555666
Q ss_pred ccEEEccC
Q 007628 209 LEQLNVAH 216 (595)
Q Consensus 209 L~~L~Ls~ 216 (595)
|+.|+|.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66666543
No 85
>PRK15196 secreted effector protein PipB2; Provisional
Probab=91.02 E-value=0.33 Score=51.66 Aligned_cols=7 Identities=0% Similarity=0.135 Sum_probs=2.5
Q ss_pred EccCCcC
Q 007628 213 NVAHNRF 219 (595)
Q Consensus 213 ~Ls~N~L 219 (595)
+|.+..|
T Consensus 298 df~~a~L 304 (350)
T PRK15196 298 SFISTNL 304 (350)
T ss_pred EeeCCEe
Confidence 3333333
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.41 E-value=0.22 Score=31.64 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=10.4
Q ss_pred CCCCEEEccCCCCCCCCCcc
Q 007628 88 PKLKYLDLRFNEFEGSVPSK 107 (595)
Q Consensus 88 ~~L~~LdLs~N~l~g~ip~~ 107 (595)
.+|++|+|++|+|+ .++..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45566666666665 44433
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.41 E-value=0.22 Score=31.64 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=10.4
Q ss_pred CCCCEEEccCCCCCCCCCcc
Q 007628 88 PKLKYLDLRFNEFEGSVPSK 107 (595)
Q Consensus 88 ~~L~~LdLs~N~l~g~ip~~ 107 (595)
.+|++|+|++|+|+ .++..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45566666666665 44433
No 88
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.83 E-value=0.2 Score=28.74 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=5.0
Q ss_pred CCCEEEccCCCCC
Q 007628 89 KLKYLDLRFNEFE 101 (595)
Q Consensus 89 ~L~~LdLs~N~l~ 101 (595)
+|++|||++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555543
No 89
>PRK09718 hypothetical protein; Validated
Probab=89.19 E-value=0.64 Score=50.73 Aligned_cols=12 Identities=0% Similarity=-0.230 Sum_probs=5.2
Q ss_pred hhhHHHhhcccc
Q 007628 160 TLNEIILMNDNL 171 (595)
Q Consensus 160 ~L~~L~Ls~N~l 171 (595)
.|+.++++.+.+
T Consensus 229 ~LkgVDFSdC~L 240 (512)
T PRK09718 229 RISTGNFKDCIT 240 (512)
T ss_pred cCCCcccccccc
Confidence 344444444443
No 90
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.11 E-value=0.21 Score=28.62 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=4.9
Q ss_pred CccEEEccCCcCC
Q 007628 208 SLEQLNVAHNRFT 220 (595)
Q Consensus 208 ~L~~L~Ls~N~Ls 220 (595)
+|++|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555543
No 91
>PRK09718 hypothetical protein; Validated
Probab=88.06 E-value=1.1 Score=49.04 Aligned_cols=12 Identities=0% Similarity=-0.219 Sum_probs=5.0
Q ss_pred cceEEeccCccc
Q 007628 184 NLTVFDVSFNHL 195 (595)
Q Consensus 184 ~L~~LdLs~N~L 195 (595)
+|+.+|++.|.+
T Consensus 229 ~LkgVDFSdC~L 240 (512)
T PRK09718 229 RISTGNFKDCIT 240 (512)
T ss_pred cCCCcccccccc
Confidence 344444444443
No 92
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=87.51 E-value=50 Score=36.40 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=12.0
Q ss_pred hcCCCCCCEEeccCCcCC
Q 007628 60 FRRLKLLYEVDLSNNRFV 77 (595)
Q Consensus 60 ~~~L~~L~~L~Ls~N~Ls 77 (595)
-++.-.|+.+||.+|+|.
T Consensus 73 ~~rsyFlrl~di~~~rli 90 (569)
T KOG3671|consen 73 AQRSYFLRLVDIVNNRLI 90 (569)
T ss_pred ccceeeeEEeeecCceee
Confidence 345556777888887754
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.14 E-value=0.21 Score=55.06 Aligned_cols=65 Identities=29% Similarity=0.314 Sum_probs=37.7
Q ss_pred cCCCCCCEEeccCCcCCCcC--chhcCCCCCCCEEEccCC--CCCCCCCc-cccccCCCeeeccCCcccc
Q 007628 61 RRLKLLYEVDLSNNRFVGKF--PKLFLSLPKLKYLDLRFN--EFEGSVPS-KLFDKDLDAIFLNDNRFQF 125 (595)
Q Consensus 61 ~~L~~L~~L~Ls~N~Lsg~l--p~~l~~L~~L~~LdLs~N--~l~g~ip~-~l~~~~L~~L~L~~N~l~~ 125 (595)
.+...+..|+|++|+|..+. ...-...++|++|||++| .+...... .+....|++|.|.+|-+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 35566777888888877331 122233567888888888 33211111 1112567788888887653
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.67 E-value=0.71 Score=29.19 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=10.8
Q ss_pred CCCCCEEeccCCcCCCc
Q 007628 63 LKLLYEVDLSNNRFVGK 79 (595)
Q Consensus 63 L~~L~~L~Ls~N~Lsg~ 79 (595)
|++|++|+|++|+|+.+
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35667777777776633
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.67 E-value=0.71 Score=29.19 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=10.8
Q ss_pred CCCCCEEeccCCcCCCc
Q 007628 63 LKLLYEVDLSNNRFVGK 79 (595)
Q Consensus 63 L~~L~~L~Ls~N~Lsg~ 79 (595)
|++|++|+|++|+|+.+
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35667777777776633
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.53 E-value=0.63 Score=51.46 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=34.1
Q ss_pred CCCCCcEEEccCCcCCCC--CchhhcCCCCCCEEeccCC--cCCCcCchhcCCC--CCCCEEEccCCCCCCCC
Q 007628 38 RLTDLAIFHINSNRFCGV--VPSTFRRLKLLYEVDLSNN--RFVGKFPKLFLSL--PKLKYLDLRFNEFEGSV 104 (595)
Q Consensus 38 ~L~~L~~L~Ls~N~l~~~--lp~~~~~L~~L~~L~Ls~N--~Lsg~lp~~l~~L--~~L~~LdLs~N~l~g~i 104 (595)
+...|..|.|++|+|..+ +.+.-....+|+.|+|++| .+. ...++.++ ..|++|.|.+|.|...+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 445566666777766532 1111233466777777777 332 12233332 34667777777766443
No 97
>PRK15196 secreted effector protein PipB2; Provisional
Probab=82.36 E-value=0.53 Score=50.10 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=11.3
Q ss_pred ccCCCCCCCCchhhcCCCCCcEEEccCCc
Q 007628 23 LNHADIAGYLPPEIGRLTDLAIFHINSNR 51 (595)
Q Consensus 23 Ls~n~i~~~lp~~~~~L~~L~~L~Ls~N~ 51 (595)
+.++.+.-..+..... .....++++.+.
T Consensus 85 ~~g~~~~~~~~~~~~~-~~~v~v~v~~~~ 112 (350)
T PRK15196 85 MDGCRVEFNLPGENNE-AGQVIVRVSKGD 112 (350)
T ss_pred cCCeEEEecCCCcccc-CCcEEEEEecCC
Confidence 4444444333333222 223445555444
No 98
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.23 E-value=0.22 Score=31.02 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=5.1
Q ss_pred CccEEEccCCcCC
Q 007628 208 SLEQLNVAHNRFT 220 (595)
Q Consensus 208 ~L~~L~Ls~N~Ls 220 (595)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 99
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.98 E-value=1.4 Score=28.33 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=11.2
Q ss_pred CCCCCEEEccCCCCC
Q 007628 87 LPKLKYLDLRFNEFE 101 (595)
Q Consensus 87 L~~L~~LdLs~N~l~ 101 (595)
|.+|++|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 457788888888775
No 100
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.73 E-value=0.34 Score=30.14 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=4.9
Q ss_pred CCCEEeccCCcCC
Q 007628 65 LLYEVDLSNNRFV 77 (595)
Q Consensus 65 ~L~~L~Ls~N~Ls 77 (595)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 101
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.85 E-value=2 Score=27.57 Aligned_cols=15 Identities=47% Similarity=0.561 Sum_probs=11.3
Q ss_pred CCCCCEEeccCCcCC
Q 007628 63 LKLLYEVDLSNNRFV 77 (595)
Q Consensus 63 L~~L~~L~Ls~N~Ls 77 (595)
|++|++|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 467788888888776
No 102
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=73.24 E-value=2.7 Score=54.78 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=28.9
Q ss_pred EccCCcCCCCCchhhcCCCCCCEEeccCCcCC
Q 007628 46 HINSNRFCGVVPSTFRRLKLLYEVDLSNNRFV 77 (595)
Q Consensus 46 ~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Ls 77 (595)
||++|+|+.+-...|.+|.+|++|+|++|-|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888888999999999999999876
No 103
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.46 E-value=2.8 Score=27.21 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=11.1
Q ss_pred CCCCEEEccCCCCC
Q 007628 88 PKLKYLDLRFNEFE 101 (595)
Q Consensus 88 ~~L~~LdLs~N~l~ 101 (595)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888888888886
No 104
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=68.48 E-value=3.3 Score=47.78 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=5.1
Q ss_pred ceEEeccCccc
Q 007628 185 LTVFDVSFNHL 195 (595)
Q Consensus 185 L~~LdLs~N~L 195 (595)
|+.++|.+|.|
T Consensus 314 l~~i~l~g~~i 324 (782)
T PRK15377 314 PPSVSLGGNFI 324 (782)
T ss_pred ccccccCccee
Confidence 34444555444
No 105
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=67.44 E-value=3.8 Score=53.56 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=28.0
Q ss_pred HhhccccCCCCCCccCCCccceEEeccCcccc
Q 007628 165 ILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ 196 (595)
Q Consensus 165 ~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~ 196 (595)
||++|+|+..-...|..|.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899999777778888999999999999887
No 106
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.87 E-value=4.6 Score=25.99 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=6.1
Q ss_pred ceEEeccCcccc
Q 007628 185 LTVFDVSFNHLQ 196 (595)
Q Consensus 185 L~~LdLs~N~L~ 196 (595)
|+.|++++|+|+
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 445555555554
No 107
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=60.24 E-value=11 Score=43.59 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=3.4
Q ss_pred hHHHhhcc
Q 007628 162 NEIILMND 169 (595)
Q Consensus 162 ~~L~Ls~N 169 (595)
..|++++|
T Consensus 344 ~~Ld~s~n 351 (782)
T PRK15377 344 GFLNHEHN 351 (782)
T ss_pred HHHhcCCC
Confidence 34444443
No 108
>PRK15197 secreted effector protein PipB; Provisional
Probab=58.17 E-value=17 Score=37.64 Aligned_cols=8 Identities=13% Similarity=-0.060 Sum_probs=3.1
Q ss_pred HHhhcccc
Q 007628 164 IILMNDNL 171 (595)
Q Consensus 164 L~Ls~N~l 171 (595)
.++.+.++
T Consensus 265 ad~~ga~~ 272 (291)
T PRK15197 265 ADLTGSQH 272 (291)
T ss_pred CcccCCcc
Confidence 33333333
No 109
>PF04554 Extensin_2: Extensin-like region; InterPro: IPR006706 Extensins are homologous hydroxyproline-rich glycoproteins (HRGPs) found in the plant extracellular matrix. They form a structural component which strengthens the primary cell wall; they can account for up to 20% of the dry weight of the cell wall. The key to the role of HRGPs in cell wall self-assembly and cell extension lies in their chemistry, which is dependent on extensive post-translational modifications (PTMs): hydroxylation, glycosylation, and cross-linking. Repetitive peptide motifs characterise HRGPs.; GO: 0005199 structural constituent of cell wall, 0009664 plant-type cell wall organization
Probab=56.51 E-value=39 Score=26.01 Aligned_cols=10 Identities=50% Similarity=1.055 Sum_probs=4.3
Q ss_pred CCCCCCCCCC
Q 007628 552 SYAVPPPPSP 561 (595)
Q Consensus 552 ~~~~pppp~~ 561 (595)
.|.+++++.-
T Consensus 30 ~Y~SPPPP~y 39 (58)
T PF04554_consen 30 VYKSPPPPVY 39 (58)
T ss_pred ccCCCCCCcc
Confidence 3444444433
No 110
>PRK15197 secreted effector protein PipB; Provisional
Probab=55.68 E-value=7.9 Score=40.12 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=25.1
Q ss_pred cceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 184 ~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls 244 (595)
+|+..+|++..|.+.. |. -..|+.-+|.+.+|.+. .|...+.|+..||.+.+++
T Consensus 220 dL~~A~Ls~A~L~gA~---L~-gAdLs~A~L~gAnL~~A---~L~~a~~L~gad~~ga~~t 273 (291)
T PRK15197 220 DLTCANMSGVNLTAAI---LF-GSDLTDTKLNGAKLDKI---ALTLAKALTGADLTGSQHT 273 (291)
T ss_pred cCceeecCccCcCCCE---eC-CCCcCCCCCCCCCCCcc---ccccCCCCCCCcccCCccC
Confidence 3444555555554321 11 12344444445444432 2344445666666666666
No 111
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=41.79 E-value=5.2 Score=36.21 Aligned_cols=9 Identities=11% Similarity=0.290 Sum_probs=2.8
Q ss_pred EeccCcccc
Q 007628 188 FDVSFNHLQ 196 (595)
Q Consensus 188 LdLs~N~L~ 196 (595)
+.+.+|.+.
T Consensus 102 ~~i~~n~~~ 110 (158)
T PF13229_consen 102 VTIENNTIH 110 (158)
T ss_dssp -EEES-EEE
T ss_pred EEEEeEEEE
Confidence 333444443
No 112
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=36.52 E-value=29 Score=36.52 Aligned_cols=6 Identities=33% Similarity=0.949 Sum_probs=2.5
Q ss_pred CCCCCC
Q 007628 280 GGSGWG 285 (595)
Q Consensus 280 ~g~~~~ 285 (595)
.|+.|.
T Consensus 326 ~GNyWs 331 (408)
T COG3420 326 QGNYWS 331 (408)
T ss_pred cccccc
Confidence 344443
No 113
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=31.87 E-value=12 Score=37.98 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=16.5
Q ss_pred EeccCccccCCCCCCcCCCCCccEEEccCCcCC
Q 007628 188 FDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT 220 (595)
Q Consensus 188 LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Ls 220 (595)
|.|-+|.|.|. +.|...+.|.|.+|.|.
T Consensus 196 ltliNC~I~g~-----QpLCY~~~L~l~nC~~~ 223 (277)
T PF12541_consen 196 LTLINCTIEGT-----QPLCYCDNLVLENCTMI 223 (277)
T ss_pred eEEEEeEEecc-----CccEeecceEEeCcEee
Confidence 44555666643 33445566677777765
No 114
>PF04554 Extensin_2: Extensin-like region; InterPro: IPR006706 Extensins are homologous hydroxyproline-rich glycoproteins (HRGPs) found in the plant extracellular matrix. They form a structural component which strengthens the primary cell wall; they can account for up to 20% of the dry weight of the cell wall. The key to the role of HRGPs in cell wall self-assembly and cell extension lies in their chemistry, which is dependent on extensive post-translational modifications (PTMs): hydroxylation, glycosylation, and cross-linking. Repetitive peptide motifs characterise HRGPs.; GO: 0005199 structural constituent of cell wall, 0009664 plant-type cell wall organization
Probab=27.64 E-value=1.2e+02 Score=23.37 Aligned_cols=9 Identities=67% Similarity=1.401 Sum_probs=5.3
Q ss_pred CCCCCCCCC
Q 007628 582 VSYASPPPP 590 (595)
Q Consensus 582 ~~~~~~~~~ 590 (595)
..|.|++++
T Consensus 50 y~YkSPPPP 58 (58)
T PF04554_consen 50 YVYKSPPPP 58 (58)
T ss_pred cccCCCCCC
Confidence 556666653
No 115
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.93 E-value=47 Score=34.42 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc
Q 007628 31 YLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD 110 (595)
Q Consensus 31 ~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 110 (595)
+..+.+...+.. .=.|..|-=+..+-....+=..|.+|++.++-|..+--..|.....++++ .+|+|. +..
T Consensus 76 i~akpi~g~~~n-vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi--g~n~fv------i~d 146 (316)
T COG3204 76 IDAKPILGETAN-VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI--GGNQFV------IVD 146 (316)
T ss_pred Eecccccccccc-ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe--cCCEEE------EEe
Q ss_pred cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCccccccc--------chhhHHHhhccccCCCCCCccCC
Q 007628 111 KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMG--------KTLNEIILMNDNLTGCLPPQIGM 181 (595)
Q Consensus 111 ~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~--------~~L~~L~Ls~N~l~g~ip~~~~~ 181 (595)
.+.+.|++-.-.-.+.+-.... ...|....-.|+.|+|.--+...+.+ ..+.+...+.+.+...+......
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccc
Q ss_pred CccceEEeccC---ccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccccc
Q 007628 182 LKNLTVFDVSF---NHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAA 254 (595)
Q Consensus 182 L~~L~~LdLs~---N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~ 254 (595)
...|...|+|+ |..++.+--.=..-..|.++++.++-+. +-.|.-.+|.|+..+++..+.+
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~------------~lsL~~g~~gL~~dipqaEGia 290 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIE------------LLSLTKGNHGLSSDIPQAEGIA 290 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeee------------eEEeccCCCCCcccCCCcceeE
No 116
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=24.84 E-value=47 Score=20.80 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=9.3
Q ss_pred CCCCCEEEccCCC
Q 007628 87 LPKLKYLDLRFNE 99 (595)
Q Consensus 87 L~~L~~LdLs~N~ 99 (595)
+++|++|+|+++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3577888888774
No 117
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=24.36 E-value=8.8 Score=34.67 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=3.5
Q ss_pred EEccCCcCC
Q 007628 45 FHINSNRFC 53 (595)
Q Consensus 45 L~Ls~N~l~ 53 (595)
+.|++|.|.
T Consensus 34 ~~i~n~~i~ 42 (158)
T PF13229_consen 34 ITIENCTIS 42 (158)
T ss_dssp SEEES-EEE
T ss_pred eEEECeEEE
Confidence 344444444
No 118
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=21.06 E-value=17 Score=38.14 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=41.4
Q ss_pred CCCCCcEEEccCCc-CCC----CCchhhcCCCCCCEEeccCCcCCCcCch----hcCCCCCCCEEEccCCCCCCCC
Q 007628 38 RLTDLAIFHINSNR-FCG----VVPSTFRRLKLLYEVDLSNNRFVGKFPK----LFLSLPKLKYLDLRFNEFEGSV 104 (595)
Q Consensus 38 ~L~~L~~L~Ls~N~-l~~----~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~----~l~~L~~L~~LdLs~N~l~g~i 104 (595)
+-++|+.++|++++ |.. .+-.++.+.+..+.+.|.+.+....+.. .+.-++.|+.|++++|.|+|..
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~g 271 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLG 271 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHH
Confidence 34567777776664 221 1234456677777777777776644333 2334567888888888888643
No 119
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=20.65 E-value=29 Score=38.04 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=4.1
Q ss_pred EEeeccCCCC
Q 007628 139 LVFANNDLGG 148 (595)
Q Consensus 139 L~L~~N~l~~ 148 (595)
+.+.+|.|++
T Consensus 191 ~~V~~N~I~g 200 (455)
T TIGR03808 191 LIVARNTIIG 200 (455)
T ss_pred CEEECCEEEc
Confidence 3344444443
No 120
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=20.09 E-value=18 Score=37.98 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=34.2
Q ss_pred ccceEEeccCcccc-----CCCCCCcCCCCCccEEEccCCcCCCCCch----hccCCCCCcEEEcccccCCCC
Q 007628 183 KNLTVFDVSFNHLQ-----GSLPSSIGNMKSLEQLNVAHNRFTGVIPS----SVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 183 ~~L~~LdLs~N~L~-----g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~----~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
++|+.++|+++.=. ..+-.++..-+.++.+.|.+.+....+.. .+..+..|+.|+|+.|+|+|.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~ 270 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGL 270 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccH
Confidence 34555665544311 01223444555566666666665544332 233345677777777777774
Done!