Query 007628
Match_columns 595
No_of_seqs 416 out of 2682
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 06:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 3.6E-36 1.2E-40 312.2 12.6 262 1-269 39-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 9.8E-35 3.4E-39 336.6 18.0 259 12-270 414-743 (768)
3 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-33 7.9E-38 291.1 5.7 233 11-246 71-307 (313)
4 3rgz_A Protein brassinosteroid 100.0 5.5E-32 1.9E-36 313.6 17.6 240 15-255 393-704 (768)
5 3v47_A TOLL-like receptor 5B a 100.0 1.5E-30 5.1E-35 282.0 19.4 112 137-249 278-389 (455)
6 4fcg_A Uncharacterized protein 100.0 4.2E-30 1.4E-34 268.5 17.9 225 15-245 80-315 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 3.3E-30 1.1E-34 279.2 17.6 237 12-249 75-413 (455)
8 4eco_A Uncharacterized protein 100.0 6.8E-31 2.3E-35 298.3 9.4 236 1-249 73-420 (636)
9 3zyi_A Leucine-rich repeat-con 100.0 1.9E-29 6.4E-34 274.4 19.0 229 16-248 75-307 (452)
10 2id5_A Lingo-1, leucine rich r 100.0 1.6E-29 5.6E-34 276.1 17.4 258 11-269 51-335 (477)
11 2z66_A Variable lymphocyte rec 100.0 2E-29 6.9E-34 259.4 15.9 231 16-248 28-265 (306)
12 3zyj_A Leucine-rich repeat-con 100.0 5.8E-29 2E-33 269.6 19.8 229 16-247 64-295 (440)
13 2id5_A Lingo-1, leucine rich r 100.0 2.7E-29 9.2E-34 274.4 16.0 237 11-248 75-337 (477)
14 2z80_A TOLL-like receptor 2, v 100.0 1.6E-29 5.5E-34 265.8 12.0 242 5-248 36-318 (353)
15 1ozn_A Reticulon 4 receptor; N 100.0 6.1E-29 2.1E-33 253.4 16.0 227 18-248 13-242 (285)
16 2ft3_A Biglycan; proteoglycan, 100.0 4.4E-28 1.5E-32 252.6 20.2 229 16-252 54-285 (332)
17 4ecn_A Leucine-rich repeat pro 100.0 2.9E-29 9.8E-34 292.9 11.8 237 1-250 315-663 (876)
18 3o6n_A APL1; leucine-rich repe 100.0 3.5E-28 1.2E-32 258.8 17.5 106 136-246 228-333 (390)
19 4fcg_A Uncharacterized protein 100.0 5.5E-28 1.9E-32 252.4 18.1 213 38-256 79-302 (328)
20 3t6q_A CD180 antigen; protein- 100.0 4.3E-28 1.5E-32 272.4 18.2 255 12-269 274-562 (606)
21 1xku_A Decorin; proteoglycan, 100.0 1.4E-27 5E-32 248.3 20.5 229 16-252 52-284 (330)
22 3zyi_A Leucine-rich repeat-con 100.0 8.7E-28 3E-32 261.2 19.4 248 17-270 55-306 (452)
23 3zyj_A Leucine-rich repeat-con 100.0 1.2E-27 4.1E-32 259.3 20.0 248 17-270 44-295 (440)
24 2z66_A Variable lymphocyte rec 100.0 3.4E-28 1.1E-32 250.3 14.8 247 18-269 9-263 (306)
25 2ft3_A Biglycan; proteoglycan, 99.9 4.5E-27 1.5E-31 245.0 21.0 227 11-244 73-307 (332)
26 3t6q_A CD180 antigen; protein- 99.9 1.6E-27 5.3E-32 267.8 18.8 231 16-248 33-342 (606)
27 4eco_A Uncharacterized protein 99.9 3E-28 1E-32 276.5 12.9 229 12-244 202-470 (636)
28 3oja_B Anopheles plasmodium-re 99.9 1.3E-27 4.4E-32 269.2 17.5 227 16-247 75-340 (597)
29 1ozn_A Reticulon 4 receptor; N 99.9 3.8E-28 1.3E-32 247.5 11.6 234 15-250 31-267 (285)
30 4g8a_A TOLL-like receptor 4; l 99.9 4.4E-27 1.5E-31 263.6 20.6 110 161-270 471-583 (635)
31 1xku_A Decorin; proteoglycan, 99.9 7E-27 2.4E-31 243.2 20.0 228 11-245 71-307 (330)
32 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-27 5.7E-32 264.2 16.0 153 2-155 8-169 (549)
33 1ziw_A TOLL-like receptor 3; i 99.9 4.8E-27 1.6E-31 267.6 20.0 259 11-270 324-625 (680)
34 3o6n_A APL1; leucine-rich repe 99.9 3E-27 1E-31 251.7 16.5 231 14-248 43-312 (390)
35 2z7x_B TOLL-like receptor 1, v 99.9 3.6E-27 1.2E-31 260.1 17.2 230 16-248 21-391 (520)
36 3vq2_A TLR4, TOLL-like recepto 99.9 2.3E-27 7.8E-32 266.4 15.5 251 12-269 303-560 (606)
37 2o6q_A Variable lymphocyte rec 99.9 1E-26 3.4E-31 235.6 18.5 214 2-248 9-222 (270)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-26 3.8E-31 259.3 19.8 230 16-248 52-420 (562)
39 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-26 5.5E-31 270.4 20.7 236 12-247 69-354 (844)
40 2z62_A TOLL-like receptor 4, v 99.9 7.3E-27 2.5E-31 236.9 15.3 206 18-248 30-241 (276)
41 1wwl_A Monocyte differentiatio 99.9 4.2E-28 1.4E-32 251.1 5.8 202 38-245 93-310 (312)
42 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-26 5.5E-31 263.2 19.2 232 16-248 381-626 (680)
43 2z80_A TOLL-like receptor 2, v 99.9 5.2E-27 1.8E-31 246.6 13.6 246 19-269 34-316 (353)
44 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-26 7.7E-31 269.2 19.4 236 16-251 24-334 (844)
45 3vq2_A TLR4, TOLL-like recepto 99.9 6.3E-27 2.1E-31 262.8 13.8 231 14-249 326-563 (606)
46 2z63_A TOLL-like receptor 4, v 99.9 5.3E-26 1.8E-30 252.8 20.0 110 160-269 422-533 (570)
47 3oja_B Anopheles plasmodium-re 99.9 2.2E-26 7.4E-31 259.2 16.7 230 14-247 49-317 (597)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-26 8.1E-31 256.6 16.2 235 11-249 71-446 (562)
49 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-27 8.7E-32 245.8 7.5 218 14-244 32-250 (317)
50 3o53_A Protein LRIM1, AGAP0063 99.9 6.5E-27 2.2E-31 242.7 10.4 240 16-267 10-250 (317)
51 2z7x_B TOLL-like receptor 1, v 99.9 3E-26 1E-30 252.8 16.3 83 12-100 65-150 (520)
52 4ecn_A Leucine-rich repeat pro 99.9 3.8E-26 1.3E-30 266.6 15.8 229 11-244 443-710 (876)
53 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-26 6.4E-31 255.7 12.3 121 11-131 45-168 (549)
54 1wwl_A Monocyte differentiatio 99.9 7.8E-28 2.7E-32 249.1 0.8 223 15-246 42-289 (312)
55 3rfs_A Internalin B, repeat mo 99.9 1.5E-26 5.2E-31 234.7 9.5 224 15-252 18-243 (272)
56 3oja_A Leucine-rich immune mol 99.9 2.6E-26 8.9E-31 252.6 11.3 218 14-244 32-250 (487)
57 2z63_A TOLL-like receptor 4, v 99.9 4.7E-26 1.6E-30 253.3 12.8 238 12-252 278-539 (570)
58 4fmz_A Internalin; leucine ric 99.9 5.5E-25 1.9E-29 229.9 19.8 222 12-247 84-327 (347)
59 3oja_A Leucine-rich immune mol 99.9 3.2E-26 1.1E-30 251.9 8.4 198 39-248 33-231 (487)
60 1p9a_G Platelet glycoprotein I 99.9 1.6E-24 5.3E-29 222.5 18.1 204 13-246 7-210 (290)
61 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-24 1.1E-28 234.0 21.4 212 13-248 39-250 (457)
62 1o6v_A Internalin A; bacterial 99.9 1.6E-24 5.4E-29 236.4 18.9 219 12-247 173-391 (466)
63 4fmz_A Internalin; leucine ric 99.9 3.9E-24 1.3E-28 223.4 20.9 218 13-246 63-280 (347)
64 3rfs_A Internalin B, repeat mo 99.9 6.5E-25 2.2E-29 222.6 14.1 208 13-232 38-247 (272)
65 3m19_A Variable lymphocyte rec 99.9 2E-24 7E-29 216.2 17.2 180 17-246 15-194 (251)
66 1o6v_A Internalin A; bacterial 99.9 6.2E-24 2.1E-28 231.8 19.8 221 12-247 64-325 (466)
67 3bz5_A Internalin-J, INLJ; leu 99.9 6E-24 2E-28 232.0 19.5 208 11-243 59-266 (457)
68 4glp_A Monocyte differentiatio 99.9 9.1E-25 3.1E-29 225.7 12.0 223 17-245 65-308 (310)
69 2z62_A TOLL-like receptor 4, v 99.9 7.8E-24 2.7E-28 214.5 14.9 224 20-270 11-240 (276)
70 1p9a_G Platelet glycoprotein I 99.9 1.7E-23 5.7E-28 214.8 17.3 179 16-222 31-210 (290)
71 2xwt_C Thyrotropin receptor; s 99.9 9.4E-24 3.2E-28 209.5 14.8 196 41-242 32-237 (239)
72 1h6u_A Internalin H; cell adhe 99.9 2.5E-24 8.7E-29 222.6 9.3 210 22-248 25-234 (308)
73 2ca6_A RAN GTPase-activating p 99.9 8.2E-26 2.8E-30 240.4 -3.0 234 14-248 30-320 (386)
74 1jl5_A Outer protein YOPM; leu 99.9 4E-23 1.4E-27 225.2 17.8 83 160-250 318-417 (454)
75 2o6q_A Variable lymphocyte rec 99.9 1.2E-22 4E-27 205.6 19.7 185 16-223 37-221 (270)
76 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-23 1.1E-27 232.1 14.3 229 15-247 348-583 (635)
77 3m19_A Variable lymphocyte rec 99.9 1.4E-22 4.8E-27 202.8 17.1 180 40-269 14-194 (251)
78 3goz_A Leucine-rich repeat-con 99.9 1.6E-24 5.6E-29 228.8 1.1 231 16-246 22-299 (362)
79 3goz_A Leucine-rich repeat-con 99.9 2.2E-24 7.5E-29 227.8 1.8 229 20-248 2-270 (362)
80 4glp_A Monocyte differentiatio 99.9 5.2E-23 1.8E-27 212.4 11.5 202 40-246 64-287 (310)
81 1h6u_A Internalin H; cell adhe 99.9 1.7E-22 5.8E-27 208.9 14.1 193 14-221 39-231 (308)
82 1jl5_A Outer protein YOPM; leu 99.9 2.9E-23 1E-27 226.3 8.6 213 14-245 9-251 (454)
83 2ast_B S-phase kinase-associat 99.9 4.3E-24 1.5E-28 221.9 1.4 219 18-241 49-282 (336)
84 2o6s_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 194.0 13.8 178 18-252 9-186 (208)
85 4ay9_X Follicle-stimulating ho 99.9 5.4E-22 1.8E-26 208.6 16.2 222 16-243 30-258 (350)
86 2xwt_C Thyrotropin receptor; s 99.9 3.2E-22 1.1E-26 198.5 11.1 181 64-249 31-223 (239)
87 3cvr_A Invasion plasmid antige 99.9 3.6E-22 1.2E-26 223.2 12.8 188 17-231 60-254 (571)
88 2ast_B S-phase kinase-associat 99.9 2E-23 6.7E-28 216.9 0.3 233 16-253 70-315 (336)
89 3g06_A SSPH2 (leucine-rich rep 99.9 6.3E-21 2.2E-25 215.4 20.2 209 16-250 61-303 (622)
90 1h6t_A Internalin B; cell adhe 99.9 3.4E-22 1.2E-26 205.0 8.5 193 15-246 23-215 (291)
91 2ca6_A RAN GTPase-activating p 99.9 1.9E-23 6.4E-28 222.1 -1.7 226 18-245 11-288 (386)
92 2o6s_A Variable lymphocyte rec 99.9 1.4E-20 4.7E-25 182.7 18.6 175 2-184 11-190 (208)
93 1m9s_A Internalin B; cell inva 99.9 6.1E-22 2.1E-26 223.2 9.5 195 13-246 18-212 (605)
94 3cvr_A Invasion plasmid antige 99.8 1.8E-21 6.2E-26 217.5 12.4 186 41-253 60-252 (571)
95 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-20 5.1E-25 212.3 19.2 201 17-244 41-274 (622)
96 4ay9_X Follicle-stimulating ho 99.8 2.4E-21 8.2E-26 203.6 11.4 217 19-242 12-234 (350)
97 1z7x_W Ribonuclease inhibitor; 99.8 5.6E-24 1.9E-28 230.4 -9.6 233 12-245 109-412 (461)
98 2v9t_B SLIT homolog 2 protein 99.8 6.8E-21 2.3E-25 187.3 13.1 80 19-101 14-93 (220)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 5E-21 1.7E-25 188.3 11.8 81 18-101 13-94 (220)
100 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-23 6.5E-28 226.3 -7.6 231 14-244 26-297 (461)
101 2xot_A Amphoterin-induced prot 99.8 4E-21 1.4E-25 202.9 9.1 178 19-246 21-204 (361)
102 1h6t_A Internalin B; cell adhe 99.8 1.5E-20 5.1E-25 192.8 10.5 171 14-221 44-214 (291)
103 3e6j_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 178.9 17.1 156 17-247 20-175 (229)
104 1m9s_A Internalin B; cell inva 99.8 3.2E-20 1.1E-24 209.1 12.8 173 13-198 40-212 (605)
105 1xeu_A Internalin C; cellular 99.8 2.5E-21 8.5E-26 195.7 3.0 172 13-222 16-187 (263)
106 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 172.4 18.4 150 2-223 23-175 (229)
107 1dce_A Protein (RAB geranylger 99.8 1.5E-22 5.1E-27 226.6 -14.0 191 37-249 346-551 (567)
108 1xeu_A Internalin C; cellular 99.8 1.7E-19 5.7E-24 182.3 9.1 173 38-248 17-189 (263)
109 4b8c_D Glucose-repressible alc 99.8 2.3E-19 7.7E-24 206.5 10.3 194 17-220 192-404 (727)
110 2v9t_B SLIT homolog 2 protein 99.8 2.7E-18 9.2E-23 168.7 15.4 135 16-221 32-166 (220)
111 4b8c_D Glucose-repressible alc 99.8 4E-20 1.4E-24 212.8 2.0 217 16-245 173-405 (727)
112 1dce_A Protein (RAB geranylger 99.8 3.8E-22 1.3E-26 223.3 -15.4 204 13-238 346-567 (567)
113 4ezg_A Putative uncharacterize 99.8 4.1E-19 1.4E-23 171.1 7.6 89 152-245 106-195 (197)
114 4ezg_A Putative uncharacterize 99.8 7.3E-19 2.5E-23 169.3 9.2 157 35-221 39-195 (197)
115 2xot_A Amphoterin-induced prot 99.8 1.1E-18 3.9E-23 184.0 10.6 178 67-269 21-204 (361)
116 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-18 1.4E-22 167.3 13.4 137 16-223 32-169 (220)
117 1w8a_A SLIT protein; signaling 99.7 2.8E-18 9.7E-23 164.8 10.0 132 18-223 10-142 (192)
118 1w8a_A SLIT protein; signaling 99.7 6.3E-18 2.2E-22 162.4 7.9 132 91-248 11-143 (192)
119 3sb4_A Hypothetical leucine ri 99.7 9.7E-18 3.3E-22 174.4 6.9 228 15-248 24-314 (329)
120 3ogk_B Coronatine-insensitive 99.7 3.1E-19 1E-23 199.3 -5.1 234 11-246 265-528 (592)
121 2ell_A Acidic leucine-rich nuc 99.7 5.4E-17 1.8E-21 151.8 10.1 134 39-245 23-161 (168)
122 2ell_A Acidic leucine-rich nuc 99.7 2.8E-17 9.5E-22 153.8 7.2 86 14-101 22-108 (168)
123 2wfh_A SLIT homolog 2 protein 99.7 6.8E-17 2.3E-21 155.5 8.7 94 152-246 48-141 (193)
124 2wfh_A SLIT homolog 2 protein 99.7 4.4E-16 1.5E-20 149.9 13.7 129 19-222 13-141 (193)
125 2je0_A Acidic leucine-rich nuc 99.7 8.3E-17 2.9E-21 147.4 7.4 60 40-101 17-77 (149)
126 2je0_A Acidic leucine-rich nuc 99.7 7.9E-17 2.7E-21 147.6 7.0 84 16-101 17-101 (149)
127 2o6r_A Variable lymphocyte rec 99.7 1.1E-15 3.7E-20 144.3 14.8 81 18-101 9-89 (177)
128 3ogk_B Coronatine-insensitive 99.6 4.4E-18 1.5E-22 189.9 -4.5 224 15-240 163-445 (592)
129 2o6r_A Variable lymphocyte rec 99.6 1.6E-15 5.3E-20 143.2 11.9 113 135-248 29-141 (177)
130 1ds9_A Outer arm dynein; leuci 99.6 2.5E-18 8.5E-23 165.7 -9.2 156 36-245 14-186 (198)
131 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.6E-20 159.0 9.0 220 15-238 48-328 (329)
132 1a9n_A U2A', U2A'; complex (nu 99.6 9.7E-16 3.3E-20 144.7 7.3 63 35-101 14-77 (176)
133 4fdw_A Leucine rich hypothetic 99.6 1.3E-14 4.4E-19 155.5 16.0 218 17-246 136-360 (401)
134 1a9n_A U2A', U2A'; complex (nu 99.6 1E-15 3.6E-20 144.5 6.5 85 13-101 16-101 (176)
135 1ds9_A Outer arm dynein; leuci 99.6 1E-17 3.5E-22 161.5 -10.3 154 15-221 17-186 (198)
136 4fdw_A Leucine rich hypothetic 99.6 2.8E-14 9.7E-19 152.8 15.3 218 17-244 158-383 (401)
137 2p1m_B Transport inhibitor res 99.5 7.9E-17 2.7E-21 179.7 -6.5 37 14-50 182-221 (594)
138 2p1m_B Transport inhibitor res 99.5 2.7E-16 9.3E-21 175.3 -3.8 105 15-121 104-221 (594)
139 3g39_A Variable lymphocyte rec 99.5 1.6E-14 5.6E-19 135.9 9.0 109 136-248 11-119 (170)
140 3g39_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 130.8 11.2 105 17-124 10-115 (170)
141 2r9u_A Variable lymphocyte rec 99.5 8.3E-14 2.8E-18 131.7 9.4 108 137-248 15-122 (174)
142 2r9u_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 128.8 11.8 104 18-124 14-118 (174)
143 3un9_A NLR family member X1; l 99.4 2.5E-15 8.7E-20 159.4 -5.9 185 39-244 71-283 (372)
144 2ifg_A High affinity nerve gro 99.4 7.6E-13 2.6E-17 138.0 10.7 105 19-125 11-117 (347)
145 3un9_A NLR family member X1; l 99.4 7.1E-15 2.4E-19 156.0 -5.8 163 63-246 71-254 (372)
146 2ifg_A High affinity nerve gro 99.3 2.3E-12 8E-17 134.3 10.9 92 12-104 27-119 (347)
147 2ra8_A Uncharacterized protein 99.2 9E-12 3.1E-16 131.5 4.7 59 182-242 278-341 (362)
148 4fs7_A Uncharacterized protein 99.1 3.4E-10 1.2E-14 120.4 12.6 203 32-241 154-376 (394)
149 4gt6_A Cell surface protein; l 99.1 8.8E-10 3E-14 117.1 14.4 78 17-96 65-145 (394)
150 2ra8_A Uncharacterized protein 99.0 6.9E-11 2.4E-15 124.7 3.9 66 181-246 250-322 (362)
151 4fs7_A Uncharacterized protein 98.9 2E-09 6.9E-14 114.3 11.0 201 31-241 131-353 (394)
152 4gt6_A Cell surface protein; l 98.9 1.3E-08 4.5E-13 108.0 13.9 105 134-243 265-369 (394)
153 4h09_A Hypothetical leucine ri 98.8 2.6E-08 8.9E-13 104.8 14.6 103 135-241 218-320 (379)
154 4h09_A Hypothetical leucine ri 98.8 2.1E-08 7.3E-13 105.5 13.9 219 15-244 45-299 (379)
155 1io0_A Tropomodulin; LRR prote 98.7 2.8E-09 9.6E-14 101.4 2.3 120 28-147 24-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 1.6E-09 5.4E-14 103.2 -3.0 110 15-124 35-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 4.3E-08 1.5E-12 98.8 1.2 40 62-101 168-209 (267)
158 3rw6_A Nuclear RNA export fact 98.4 1.6E-07 5.6E-12 94.6 4.9 83 21-105 148-237 (267)
159 3e4g_A ATP synthase subunit S, 98.2 7.7E-07 2.6E-11 83.9 3.5 83 17-99 62-150 (176)
160 1pgv_A TMD-1, tropomodulin TMD 97.9 2.6E-06 9.1E-11 81.6 2.6 114 34-147 35-170 (197)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.3E-06 4.5E-11 83.8 -2.4 42 36-77 66-111 (197)
162 3e4g_A ATP synthase subunit S, 97.7 1.1E-05 3.7E-10 76.0 1.9 62 40-101 61-128 (176)
163 3rfe_A Platelet glycoprotein I 97.3 0.00021 7.1E-09 63.7 5.5 57 187-245 12-69 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.00033 1.1E-08 62.4 4.5 55 20-76 12-67 (130)
165 2lz0_A Uncharacterized protein 89.2 0.66 2.3E-05 38.8 6.0 48 26-74 6-53 (100)
166 3pss_A QNR; pentapeptide repea 88.7 0.32 1.1E-05 46.1 4.2 10 236-245 186-195 (216)
167 2j8k_A NP275-NP276; pentapepti 87.3 0.34 1.2E-05 46.0 3.4 11 212-222 180-190 (201)
168 2xt2_A ALBG, MCBG-like protein 85.8 0.5 1.7E-05 44.2 3.6 12 90-101 71-82 (200)
169 2w7z_A EFSQNR, pentapeptide re 83.8 1.5 5.1E-05 41.6 6.0 55 184-246 131-185 (214)
170 2lz0_A Uncharacterized protein 82.7 2.2 7.4E-05 35.6 5.9 48 170-218 7-54 (100)
171 2w7z_A EFSQNR, pentapeptide re 75.5 3.5 0.00012 38.9 5.6 54 89-148 91-144 (214)
172 2xt2_A ALBG, MCBG-like protein 75.1 1.9 6.4E-05 40.1 3.5 12 66-77 71-82 (200)
173 2xty_A QNRB1; cell cycle, pent 73.1 2.7 9.3E-05 39.8 4.2 9 237-245 188-196 (217)
174 3nb2_A Secreted effector prote 69.4 3.4 0.00012 45.7 4.4 14 208-221 161-174 (613)
175 3nb2_A Secreted effector prote 63.5 5.5 0.00019 44.0 4.5 13 184-196 161-173 (613)
176 2bm5_A MFPA, RV3361C, pentapep 53.9 3 0.0001 38.5 0.3 9 213-221 156-164 (186)
177 2bm5_A MFPA, RV3361C, pentapep 45.6 2.3 8E-05 39.2 -1.9 9 237-245 156-164 (186)
178 2f3l_A RFR-domain; beta helix, 40.0 23 0.00077 32.6 4.0 7 93-99 52-58 (184)
179 2f3l_A RFR-domain; beta helix, 38.8 13 0.00044 34.3 2.1 10 68-77 51-60 (184)
180 2qyu_A Secreted effector prote 27.5 36 0.0012 37.4 3.5 140 40-204 40-183 (627)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.6e-36 Score=312.18 Aligned_cols=262 Identities=25% Similarity=0.413 Sum_probs=234.2
Q ss_pred CceecccCCCCCCCCCceeEEEccCCCCCC--CCchhhcCCCCCcEEEccC-CcCCCCCchhhcCCCCCCEEeccCCcCC
Q 007628 1 MGVFCARSPFNSPSLRVVASIDLNHADIAG--YLPPEIGRLTDLAIFHINS-NRFCGVVPSTFRRLKLLYEVDLSNNRFV 77 (595)
Q Consensus 1 ~gv~C~~~~~~~~~l~~L~~LdLs~n~i~~--~lp~~~~~L~~L~~L~Ls~-N~l~~~lp~~~~~L~~L~~L~Ls~N~Ls 77 (595)
.||+|+... ...+|+.|+|++|+|++ .++..|+++.+|++|+|++ |+|.+.++.+|++|.+|++|+|++|+|+
T Consensus 39 ~gv~C~~~~----~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 114 (313)
T 1ogq_A 39 LGVLCDTDT----QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114 (313)
T ss_dssp TTEEECCSS----SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE
T ss_pred cceEeCCCC----CCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC
Confidence 489997532 12579999999999999 8999999999999999995 9999999999999999999999999999
Q ss_pred CcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-C-CceeEEeeccCCCCCcCccc
Q 007628 78 GKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-S-PVSVLVFANNDLGGCIPGSI 154 (595)
Q Consensus 78 g~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~-~L~~L~L~~N~l~~~ip~~l 154 (595)
+.++..|.++.+|++|||++|+|++.++..+.. .+|++|+|++|++++.++..+.. . .|++|+|++|++++.++..|
T Consensus 115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 999999999999999999999999988887766 89999999999999888887766 3 79999999999999999999
Q ss_pred ccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCc
Q 007628 155 GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ 234 (595)
Q Consensus 155 ~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~ 234 (595)
+.+ . |++|+|++|++.+.++..|..+.+|++|+|++|.|++.++. +..+.+|++|+|++|+|++.++.+|.++.+|+
T Consensus 195 ~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 195 ANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp GGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred hCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 998 4 99999999999999999999999999999999999977665 88899999999999999999999999999999
Q ss_pred EEEcccccCCCCCCccccccCCCCcccccCCCCCC
Q 007628 235 NFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCS 269 (595)
Q Consensus 235 ~L~Ls~N~Lsg~~p~~~~~~~~~~~~~~~~~~~c~ 269 (595)
+|+|++|+|+|.++............+.+|.+.|+
T Consensus 272 ~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred EEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 99999999999988764444444444555555554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.8e-35 Score=336.62 Aligned_cols=259 Identities=23% Similarity=0.413 Sum_probs=227.8
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~ 91 (595)
+.++.+|+.|+|++|++++.++..|+++.+|++|+|++|+|.+.++..|+++.+|++|+|++|+|++.++..|.++.+|+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 45677888888888888888888888888899999999988888888888999999999999999988888899999999
Q ss_pred EEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccc------------
Q 007628 92 YLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKM------------ 157 (595)
Q Consensus 92 ~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l------------ 157 (595)
+|||++|+|+|.++.++.. .+|++|+|++|++++.++..+.. .+|++|+|++|.|+|.++..++++
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 9999999999888887766 78999999999998888877765 679999999999888777655431
Q ss_pred ---------------------------------------------------------cchhhHHHhhccccCCCCCCccC
Q 007628 158 ---------------------------------------------------------GKTLNEIILMNDNLTGCLPPQIG 180 (595)
Q Consensus 158 ---------------------------------------------------------~~~L~~L~Ls~N~l~g~ip~~~~ 180 (595)
..+|+.|+|++|+++|.++.+|+
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 14578899999999999999999
Q ss_pred CCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccccCCCCcc
Q 007628 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGGGGRM 260 (595)
Q Consensus 181 ~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~~~~~~ 260 (595)
+|.+|++|||++|+|+|.++++|++|++|++|||++|+|+|.++..|.++.+|++|||++|+|+|.|+....+.......
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~ 733 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877776667777
Q ss_pred cccCCCCCCC
Q 007628 261 MAARPADCSK 270 (595)
Q Consensus 261 ~~~~~~~c~~ 270 (595)
+.+|...|+.
T Consensus 734 ~~gN~~Lcg~ 743 (768)
T 3rgz_A 734 FLNNPGLCGY 743 (768)
T ss_dssp GCSCTEEEST
T ss_pred hcCCchhcCC
Confidence 8888888864
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.3e-33 Score=291.08 Aligned_cols=233 Identities=26% Similarity=0.419 Sum_probs=217.6
Q ss_pred CCCCCCceeEEEccC-CCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCC
Q 007628 11 NSPSLRVVASIDLNH-ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPK 89 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~-n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~ 89 (595)
.+.++.+|++|+|++ |++.+.++..|+++.+|++|+|++|+|++.++..|+++.+|++|+|++|+|++.++..|.++.+
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 456789999999995 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEccCCCCCCCCCccccc-c-CCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhh
Q 007628 90 LKYLDLRFNEFEGSVPSKLFD-K-DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILM 167 (595)
Q Consensus 90 L~~LdLs~N~l~g~ip~~l~~-~-~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls 167 (595)
|++|+|++|+|+|.++..+.. . +|++|+|++|++++.++..+....|++|+|++|+|++.++..|..+ .+|++|+|+
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~ 229 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLA 229 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT-SCCSEEECC
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcC-CCCCEEECC
Confidence 999999999999999888876 4 8999999999999999988888779999999999999999999888 899999999
Q ss_pred ccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccccc-CCCC
Q 007628 168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY-FTGE 246 (595)
Q Consensus 168 ~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~-Lsg~ 246 (595)
+|++++.++. +..+.+|++|+|++|+|++.++.+|..+.+|++|+|++|+|+|.++.. .++.+|+.|+|++|. ++|.
T Consensus 230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 9999977665 888999999999999999999999999999999999999999999876 889999999999998 6664
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5.5e-32 Score=313.57 Aligned_cols=240 Identities=29% Similarity=0.508 Sum_probs=222.4
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
+.+|+.|+|++|++++.++..|+++.+|++|+|++|+|++.++..|+++.+|++|+|++|+|++.++..|.++.+|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
|++|+|+|.++..+.. .+|++|+|++|++++.++.++.. .+|++|+|++|++++.++..++++ .+|++|+|++|.+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccC
Confidence 9999999999888776 89999999999999999988765 789999999999999999999998 89999999999988
Q ss_pred CCCCCcc----------------------------------------------------------------------CCC
Q 007628 173 GCLPPQI----------------------------------------------------------------------GML 182 (595)
Q Consensus 173 g~ip~~~----------------------------------------------------------------------~~L 182 (595)
|.++.++ +.+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 7776543 345
Q ss_pred ccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccccC
Q 007628 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAG 255 (595)
Q Consensus 183 ~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~ 255 (595)
.+|++|||++|+|+|.++++|++|.+|++|+|++|+|+|.++..|++|.+|+.|||++|+|+|.++.......
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 7799999999999999999999999999999999999999999999999999999999999999997765543
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.5e-30 Score=281.99 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=67.5
Q ss_pred eeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628 137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH 216 (595)
Q Consensus 137 ~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~ 216 (595)
++|+|++|++++.++..|+.+ .+|++|+|++|++.+..+..|+++.+|++|+|++|.|++..+..|+.+.+|++|+|++
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred eEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 333333344443344444444 5566666666666665566666666666666666666655556666666666666666
Q ss_pred CcCCCCCchhccCCCCCcEEEcccccCCCCCCc
Q 007628 217 NRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249 (595)
Q Consensus 217 N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~ 249 (595)
|+|++..+..|.++.+|++|+|++|+|++....
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcccccChhhccccccccEEECCCCccccCCHh
Confidence 666666566666666666666666666665443
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=4.2e-30 Score=268.48 Aligned_cols=225 Identities=20% Similarity=0.231 Sum_probs=196.4
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
...|+.|+|++|+|+. ++..+++|.+|++|+|++|+|+ .++..|++|.+|++|+|++|+|+ .++..|.+|.+|++||
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 3579999999999984 6778999999999999999999 88999999999999999999999 7788999999999999
Q ss_pred ccCCCCCCCCCcccc----------ccCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhH
Q 007628 95 LRFNEFEGSVPSKLF----------DKDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNE 163 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~----------~~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~ 163 (595)
|++|++.+.++..+. ..+|++|+|++|+++ .++..+. ..+|++|+|++|+|++ ++..|+.+ .+|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l-~~L~~ 233 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL-PKLEE 233 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC-TTCCE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccC-CCCCE
Confidence 999999889988764 478999999999888 5555554 4678999999999885 55567777 78999
Q ss_pred HHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628 164 IILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243 (595)
Q Consensus 164 L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L 243 (595)
|+|++|++.+.++..|+.+.+|++|+|++|++.+.++..|++|.+|++|+|++|.+.+.++..|++|.+|+.+++..|.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999988888888889999999999999888888888888999999999999998889999999999999998888776
Q ss_pred CC
Q 007628 244 TG 245 (595)
Q Consensus 244 sg 245 (595)
..
T Consensus 314 ~~ 315 (328)
T 4fcg_A 314 AQ 315 (328)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.3e-30 Score=279.23 Aligned_cols=237 Identities=19% Similarity=0.264 Sum_probs=184.5
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchh--hcCCCCCCEEeccCCcCCCcCchh-cCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPST--FRRLKLLYEVDLSNNRFVGKFPKL-FLSLP 88 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~--~~~L~~L~~L~Ls~N~Lsg~lp~~-l~~L~ 88 (595)
+.++.+|++|||++|+|+++.+..|+++.+|++|+|++|+|++.+... |+++.+|++|+|++|+|++..+.. |.+++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 456677777777777777766777777777777777777776644443 677777777777777777665554 67777
Q ss_pred CCCEEEccCCCCCCCCCccccc-----------------------------------cCCCeeeccCC------------
Q 007628 89 KLKYLDLRFNEFEGSVPSKLFD-----------------------------------KDLDAIFLNDN------------ 121 (595)
Q Consensus 89 ~L~~LdLs~N~l~g~ip~~l~~-----------------------------------~~L~~L~L~~N------------ 121 (595)
+|++|||++|+|++.....+.. .+|++|+|++|
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 7777777777776554432211 12444444444
Q ss_pred ---------------------------------------------------ccccCCCcccCC-CCceeEEeeccCCCCC
Q 007628 122 ---------------------------------------------------RFQFGIPENLGN-SPVSVLVFANNDLGGC 149 (595)
Q Consensus 122 ---------------------------------------------------~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ 149 (595)
++.+.++..+.. .+|++|+|++|+|++.
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 333333444433 6799999999999998
Q ss_pred cCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccC
Q 007628 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ 229 (595)
Q Consensus 150 ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~ 229 (595)
....|..+ .+|++|+|++|++.+.....|+.+.+|++|||++|+|++..+.+|..+.+|++|+|++|+|++.....|..
T Consensus 315 ~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 315 DDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ChhHhcCc-ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 88899888 89999999999999888899999999999999999999888999999999999999999999877778899
Q ss_pred CCCCcEEEcccccCCCCCCc
Q 007628 230 LPNLQNFTYSFNYFTGEPPS 249 (595)
Q Consensus 230 l~~L~~L~Ls~N~Lsg~~p~ 249 (595)
+.+|++|+|++|.|+|.++.
T Consensus 394 l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred CCcccEEEccCCCcccCCCc
Confidence 99999999999999998874
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=6.8e-31 Score=298.28 Aligned_cols=236 Identities=22% Similarity=0.334 Sum_probs=184.1
Q ss_pred CceecccCCCCCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcC----------------------------
Q 007628 1 MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRF---------------------------- 52 (595)
Q Consensus 1 ~gv~C~~~~~~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l---------------------------- 52 (595)
.||+|+.. .+|+.|+|++++++|.++.+|++|++|++|+|++|++
T Consensus 73 ~GV~C~~~-------~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l 145 (636)
T 4eco_A 73 PGVSLNSN-------GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145 (636)
T ss_dssp TTEEECTT-------CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHH
T ss_pred CCeEEcCC-------CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhH
Confidence 49999753 4788999999999988888999999999999988843
Q ss_pred --------------------------------------------------CCCCchhhcCCCCCCEEeccCCcCCCc---
Q 007628 53 --------------------------------------------------CGVVPSTFRRLKLLYEVDLSNNRFVGK--- 79 (595)
Q Consensus 53 --------------------------------------------------~~~lp~~~~~L~~L~~L~Ls~N~Lsg~--- 79 (595)
+| ++.+|++|++|++|+|++|+|+|.
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~ 224 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC 224 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred HHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccc
Confidence 34 677788899999999999998875
Q ss_pred --------------CchhcC--CCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCc-ccc-CCCcccCC-------
Q 007628 80 --------------FPKLFL--SLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNR-FQF-GIPENLGN------- 133 (595)
Q Consensus 80 --------------lp~~l~--~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~-l~~-~~p~~l~~------- 133 (595)
++..|. +|.+|++|+|++|+|.|.++..+.. .+|++|+|++|+ +++ .++..++.
T Consensus 225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l 304 (636)
T 4eco_A 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304 (636)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence 788888 8889999999999888888877765 788888888887 777 66666544
Q ss_pred CCceeEEeeccCCCCCcCc--ccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCC-cc
Q 007628 134 SPVSVLVFANNDLGGCIPG--SIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKS-LE 210 (595)
Q Consensus 134 ~~L~~L~L~~N~l~~~ip~--~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~-L~ 210 (595)
.+|++|+|++|+|+ .++. .|+++ .+|++|+|++|++.|.++ .|+.+.+|++|+|++|+|+ .++..|+.+.+ |+
T Consensus 305 ~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence 67888888888887 6776 77777 678888888888877777 7777777777777777777 67777777777 77
Q ss_pred EEEccCCcCCCCCchhccCCC--CCcEEEcccccCCCCCCc
Q 007628 211 QLNVAHNRFTGVIPSSVCQLP--NLQNFTYSFNYFTGEPPS 249 (595)
Q Consensus 211 ~L~Ls~N~Lsg~iP~~l~~l~--~L~~L~Ls~N~Lsg~~p~ 249 (595)
+|+|++|+|+ .++..+..+. +|++|+|++|.|++.++.
T Consensus 381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 7777777777 5666665544 677777777777765544
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.9e-29 Score=274.39 Aligned_cols=229 Identities=20% Similarity=0.206 Sum_probs=203.8
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.+|.+|++|+|++|+|+++..+.|.+|.+|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 47999999999999999999999999999999999999998899999999999999999999887888999999999999
Q ss_pred cCCCCCCCCCccccc--cCCCeeeccCCccccCCCc-cc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628 96 RFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPE-NL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL 171 (595)
Q Consensus 96 s~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~-~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l 171 (595)
++|+|+ .++...+. .+|++|+|++|+..+.+.. .+ ...+|++|+|++|+|++. ..+..+ .+|++|+|++|+|
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPL-VGLEELEMSGNHF 230 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTC-TTCCEEECTTSCC
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--cccccc-ccccEEECcCCcC
Confidence 999998 44443333 7999999999665555544 23 347899999999999865 356666 7899999999999
Q ss_pred CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
.+..+..|.++.+|++|+|++|+|++.....|.++.+|++|+|++|+|++...+.|..+.+|+.|+|++|.|.++..
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 99989999999999999999999998889999999999999999999998888889999999999999999987643
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=276.07 Aligned_cols=258 Identities=19% Similarity=0.199 Sum_probs=169.4
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
.+.++.+|+.|+|++|+|+++.+..|.+|.+|++|+|++|+|+++....|.+|.+|++|+|++|+|.+.....|.++.+|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 45677788888888888888777888888888888888888887666677888888888888888877777777777777
Q ss_pred CEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCC--------------------
Q 007628 91 KYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGG-------------------- 148 (595)
Q Consensus 91 ~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~-------------------- 148 (595)
++|+|++|+|++.....+.. .+|++|+|++|++++.....+. ..+|+.|+|.+|.+.+
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 77777777776544433333 5666666666666543332222 2334444444444443
Q ss_pred ----CcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCc
Q 007628 149 ----CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP 224 (595)
Q Consensus 149 ----~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP 224 (595)
.+...+... .+|++|+|++|++++.....|..+.+|++|+|++|.|++.....|.++.+|++|+|++|+|++..+
T Consensus 211 ~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 211 PYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred ccccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence 333333333 245556666666664433456777777777887777776666677777777888888777777777
Q ss_pred hhccCCCCCcEEEcccccCCCCCCcccccc-CCCCcccccCCCCCC
Q 007628 225 SSVCQLPNLQNFTYSFNYFTGEPPSCTAAA-GGGGRMMAARPADCS 269 (595)
Q Consensus 225 ~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~-~~~~~~~~~~~~~c~ 269 (595)
..|.++.+|+.|+|++|+|++.....+... ......+.+|.+.|+
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 777777778888888887777655433221 223333444554443
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2e-29 Score=259.41 Aligned_cols=231 Identities=18% Similarity=0.219 Sum_probs=203.2
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCC--CchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV--VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~--lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.+|+.|+|++|+|+++....|.++.+|++|+|++|+|+.+ +...+.++.+|++|+|++|+|. .++..|.++.+|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 5799999999999987666789999999999999999843 3677889999999999999998 566779999999999
Q ss_pred EccCCCCCCCCC-ccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCC-CcCcccccccchhhHHHhhcc
Q 007628 94 DLRFNEFEGSVP-SKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGG-CIPGSIGKMGKTLNEIILMND 169 (595)
Q Consensus 94 dLs~N~l~g~ip-~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~-~ip~~l~~l~~~L~~L~Ls~N 169 (595)
+|++|+|++... ..+.. .+|++|+|++|++.+.....+.. .+|++|+|++|.+++ .++..+..+ .+|++|+|++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC-cCCCEEECCCC
Confidence 999999986544 22222 79999999999999887776654 789999999999987 577888887 89999999999
Q ss_pred ccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCC-CCCcEEEcccccCCCCCC
Q 007628 170 NLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL-PNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 170 ~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l-~~L~~L~Ls~N~Lsg~~p 248 (595)
++.+..+..|..+.+|++|+|++|.|++.....|..+.+|++|+|++|+|++..+..+..+ .+|++|+|++|.|++...
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9998889999999999999999999997777789999999999999999999999999998 599999999999988643
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.8e-29 Score=269.60 Aligned_cols=229 Identities=22% Similarity=0.229 Sum_probs=202.2
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+++.|+|++|+|+++....|.++.+|++|+|++|+|+++...+|.+|.+|++|+|++|+|+++..+.|.++.+|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56899999999999998899999999999999999999988899999999999999999999777778999999999999
Q ss_pred cCCCCCCCCCccccc-cCCCeeeccCCccccCCCc-cc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPE-NL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~-~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
++|+|++.....+.. .+|++|+|++|+..+.+.. .+ ...+|++|+|++|+|+.. + .+..+ .+|++|+|++|+|+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l-~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPL-IKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTC-SSCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCC-cccCEEECCCCccC
Confidence 999998443333333 7999999999665555544 33 347899999999999843 3 46666 78999999999999
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~ 247 (595)
+..+..|.++.+|++|+|++|+|++....+|.++.+|++|+|++|+|++...+.|..+.+|+.|+|++|.|.++.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 988999999999999999999999888999999999999999999999888888999999999999999998653
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=274.36 Aligned_cols=237 Identities=16% Similarity=0.133 Sum_probs=189.1
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
.+.++.+|+.|+|++|+|+++....|.++.+|++|+|++|+|.++....|.++.+|++|+|++|+|+++....|.++.+|
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 45677888888888888887766677888888888888888887777788888888888888888877777777778888
Q ss_pred CEEEccCCCCCCCCCccccc-cCCCeeeccCCccccC------------------------CCcc-cCCCCceeEEeecc
Q 007628 91 KYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFG------------------------IPEN-LGNSPVSVLVFANN 144 (595)
Q Consensus 91 ~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~------------------------~p~~-l~~~~L~~L~L~~N 144 (595)
++|+|++|+|++.....+.. .+|+.|+|++|++.+. +... +...+|++|+|++|
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 88888888777433222222 4566666655555433 2222 22247888999999
Q ss_pred CCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCc
Q 007628 145 DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP 224 (595)
Q Consensus 145 ~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP 224 (595)
+|++.....|..+ .+|++|+|++|.|.+.....|..+.+|++|+|++|+|++..+.+|.++.+|++|+|++|+|++...
T Consensus 235 ~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 235 NLTAVPYLAVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp CCCSCCHHHHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred cccccCHHHhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 9986555667777 899999999999998888899999999999999999999889999999999999999999998888
Q ss_pred hhccCCCCCcEEEcccccCCCCCC
Q 007628 225 SSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 225 ~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
..|..+.+|+.|+|++|.|++...
T Consensus 314 ~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp GGBSCGGGCCEEECCSSCEECSGG
T ss_pred hHcCCCcccCEEEccCCCccCccc
Confidence 889999999999999999987643
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=265.78 Aligned_cols=242 Identities=19% Similarity=0.241 Sum_probs=197.2
Q ss_pred cccCCCCCCCC-----CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc
Q 007628 5 CARSPFNSPSL-----RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79 (595)
Q Consensus 5 C~~~~~~~~~l-----~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~ 79 (595)
|++...+...+ .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|+++.+|++|+|++|+|++.
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 66554443333 4799999999999998877899999999999999999998889999999999999999999977
Q ss_pred CchhcCCCCCCCEEEccCCCCCCCCCc-ccc--ccCCCeeeccCCc-cccCCCcccC-CCCceeEEeeccCCCCCcCccc
Q 007628 80 FPKLFLSLPKLKYLDLRFNEFEGSVPS-KLF--DKDLDAIFLNDNR-FQFGIPENLG-NSPVSVLVFANNDLGGCIPGSI 154 (595)
Q Consensus 80 lp~~l~~L~~L~~LdLs~N~l~g~ip~-~l~--~~~L~~L~L~~N~-l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l 154 (595)
....|.++.+|++|||++|+|+ .++. ..+ ..+|++|+|++|+ +.+.....+. ..+|++|+|++|++++..+..|
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 6777999999999999999998 4554 333 2899999999995 5544444454 4689999999999999889999
Q ss_pred ccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCC-------------------------------CCc
Q 007628 155 GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLP-------------------------------SSI 203 (595)
Q Consensus 155 ~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP-------------------------------~~l 203 (595)
..+ .+|++|+|++|++.......+..+.+|++|+|++|.|++... +.|
T Consensus 195 ~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 195 KSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp TTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred hcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 988 789999999999864433344568899999999999986432 235
Q ss_pred CCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 204 GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 204 ~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
..+.+|++|+|++|+|++.....|.++.+|++|+|++|.|+|...
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 677889999999999984433446888999999999999988754
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.1e-29 Score=253.40 Aligned_cols=227 Identities=16% Similarity=0.182 Sum_probs=198.4
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~ 97 (595)
.+.+++++++++.+ +.. ...+|++|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|||++
T Consensus 13 ~~~~~c~~~~l~~i-p~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQAV-PVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSSC-CTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcccC-CcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 36889999998874 433 356899999999999988888899999999999999999988888999999999999999
Q ss_pred CC-CCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC
Q 007628 98 NE-FEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC 174 (595)
Q Consensus 98 N~-l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ 174 (595)
|+ +++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|+|++.....|.++ .+|++|+|++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC-CCccEEECCCCccccc
Confidence 97 66443444443 7899999999999987776665 4789999999999998777778877 8999999999999977
Q ss_pred CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 175 ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
....|..+.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++.....|..+.+|++|+|++|.|++...
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 77789999999999999999998889999999999999999999998877889999999999999999987644
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.4e-28 Score=252.65 Aligned_cols=229 Identities=18% Similarity=0.245 Sum_probs=190.5
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++.+.+|++|.+|++|+|++|+|+ .++..+. .+|++|+|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 46888999999888877778888999999999999998888888899999999999999888 4454443 78899999
Q ss_pred cCCCCCCCCCccccc-cCCCeeeccCCcccc--CCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQF--GIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~--~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
++|+|++.....+.. .+|++|+|++|+++. .....+...+|++|++++|++++ ++..+. .+|++|+|++|++.
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP---ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC---SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc---CCCCEEECCCCcCC
Confidence 999888444333333 789999999998853 55566665688899999998886 455443 57999999999999
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccc
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA 252 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~ 252 (595)
+.....|..+.+|++|+|++|.|++.....|+.+.+|++|+|++|+|+ .++..+.++.+|++|+|++|+|++.....++
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 888889999999999999999999888888999999999999999998 7888899999999999999999987665443
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.9e-29 Score=292.86 Aligned_cols=237 Identities=20% Similarity=0.319 Sum_probs=207.0
Q ss_pred CceecccCCCCCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEc-cCCcCCCC------------------------
Q 007628 1 MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHI-NSNRFCGV------------------------ 55 (595)
Q Consensus 1 ~gv~C~~~~~~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~L-s~N~l~~~------------------------ 55 (595)
.||+|++. .+|+.|+|++++|.|.++.+|++|++|++|+| ++|.|.|.
T Consensus 315 ~GV~C~~~-------~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~ 387 (876)
T 4ecn_A 315 PGVDLDNN-------GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387 (876)
T ss_dssp TTEEECTT-------SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHH
T ss_pred CceEecCC-------CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhh
Confidence 48999762 47999999999999999999999999999999 77754333
Q ss_pred ----------------------------------------------------CchhhcCCCCCCEEeccCCcCCC-----
Q 007628 56 ----------------------------------------------------VPSTFRRLKLLYEVDLSNNRFVG----- 78 (595)
Q Consensus 56 ----------------------------------------------------lp~~~~~L~~L~~L~Ls~N~Lsg----- 78 (595)
++.+|++|.+|++|+|++|+|+|
T Consensus 388 ~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~ 467 (876)
T 4ecn_A 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV 467 (876)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred hhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccc
Confidence 77889999999999999999998
Q ss_pred ------------cCchhcC--CCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCc-ccc-CCCcccCC--------
Q 007628 79 ------------KFPKLFL--SLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNR-FQF-GIPENLGN-------- 133 (595)
Q Consensus 79 ------------~lp~~l~--~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~-l~~-~~p~~l~~-------- 133 (595)
.++..|. +|.+|++|+|++|+|.|.++..+.. .+|++|+|++|+ +++ .++..++.
T Consensus 468 ~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l 547 (876)
T 4ecn_A 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547 (876)
T ss_dssp SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred cccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence 3888877 9999999999999999999987776 799999999998 887 66654432
Q ss_pred CCceeEEeeccCCCCCcCc--ccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCC-cc
Q 007628 134 SPVSVLVFANNDLGGCIPG--SIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKS-LE 210 (595)
Q Consensus 134 ~~L~~L~L~~N~l~~~ip~--~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~-L~ 210 (595)
.+|++|+|++|+|+ .++. .|+++ .+|++|+|++|+|. .++ .|+.|.+|++|+|++|.|+ .++..|..+.+ |+
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred CCccEEEeeCCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence 47999999999999 7888 88888 79999999999998 777 8999999999999999999 88989999998 99
Q ss_pred EEEccCCcCCCCCchhccCCCC--CcEEEcccccCCCCCCcc
Q 007628 211 QLNVAHNRFTGVIPSSVCQLPN--LQNFTYSFNYFTGEPPSC 250 (595)
Q Consensus 211 ~L~Ls~N~Lsg~iP~~l~~l~~--L~~L~Ls~N~Lsg~~p~~ 250 (595)
+|+|++|+|+ .++..+..+.. |+.|+|++|+|+|.++..
T Consensus 623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 9999999998 77888877654 999999999998876543
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=3.5e-28 Score=258.83 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=61.1
Q ss_pred ceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEcc
Q 007628 136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVA 215 (595)
Q Consensus 136 L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls 215 (595)
|++|+|++|++++. ..+..+ .+|++|+|++|.+.+..+..|..+.+|++|+|++|+|++ ++..+..+.+|++|+|+
T Consensus 228 L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 228 LTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECC
T ss_pred ccEEECCCCCCccc--HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECC
Confidence 33444444444332 233344 456666666666666556666666666666666666663 44445556666666666
Q ss_pred CCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 216 HNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 216 ~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+|+|+ .++..+..+.+|++|+|++|.|+..
T Consensus 304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCcce-ecCccccccCcCCEEECCCCcccee
Confidence 66666 3445555666666666666666654
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.5e-28 Score=252.42 Aligned_cols=213 Identities=18% Similarity=0.239 Sum_probs=195.8
Q ss_pred CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCee
Q 007628 38 RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAI 116 (595)
Q Consensus 38 ~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L 116 (595)
...+|+.|+|++|+|+ .++..|++|.+|++|+|++|+|+ .++..|.+|.+|++|||++|+|+ .++..+.. .+|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999999 67888999999999999999999 88899999999999999999999 77777665 899999
Q ss_pred eccCCccccCCCcccC----------CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccce
Q 007628 117 FLNDNRFQFGIPENLG----------NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT 186 (595)
Q Consensus 117 ~L~~N~l~~~~p~~l~----------~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~ 186 (595)
+|++|++.+.++..+. ..+|++|+|++|+|+ .++..|+.+ .+|++|+|++|++.+ ++.+|+.|.+|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC-CCCCEEEccCCCCCc-CchhhccCCCCC
Confidence 9999999999888775 678999999999999 788889888 899999999999995 667899999999
Q ss_pred EEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccccCC
Q 007628 187 VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGG 256 (595)
Q Consensus 187 ~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~~ 256 (595)
+|+|++|++.+.++..|+.+.+|++|+|++|++.+.++..|.++.+|++|+|++|++.+.++........
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999987666543
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=4.3e-28 Score=272.37 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=150.7
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCch-hcCCCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPK-LFLSLPKL 90 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~-~l~~L~~L 90 (595)
+.++.+|+.|+|++|+|+. ++..|.++.+|++|+|++|+|.++.+..|.++.+|++|+|++|++.+.++. .|.++.+|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 4556667777777777663 555666677777777777776665555666666666666666655544332 34555555
Q ss_pred CEEEccCCCCCC--------------------------CCCccccc-cCCCeeeccCCccccCCCcc-c-CCCCceeEEe
Q 007628 91 KYLDLRFNEFEG--------------------------SVPSKLFD-KDLDAIFLNDNRFQFGIPEN-L-GNSPVSVLVF 141 (595)
Q Consensus 91 ~~LdLs~N~l~g--------------------------~ip~~l~~-~~L~~L~L~~N~l~~~~p~~-l-~~~~L~~L~L 141 (595)
++|||++|+|++ ..+..+.. .+|++|+|++|++.+..... + ...+|++|+|
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 555555555543 32222222 44555555555555443322 2 2245666666
Q ss_pred eccCCCCCcCcccccccchhhHHHhhccccCCC---CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCc
Q 007628 142 ANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC---LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR 218 (595)
Q Consensus 142 ~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~---ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~ 218 (595)
++|.+++.....|+.+ .+|++|+|++|++.+. ....|..+.+|++|+|++|+|++..+.+|+.+.+|++|+|++|+
T Consensus 433 ~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTCCCBTTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCCcCHHHHhCC-CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 6666666555556555 5666666666666542 22456666677777777777766666677777777777777777
Q ss_pred CCCCCchhccCCCCCcEEEcccccCCCCCCcccccc-CCCCcccccCCCCCC
Q 007628 219 FTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAA-GGGGRMMAARPADCS 269 (595)
Q Consensus 219 Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~-~~~~~~~~~~~~~c~ 269 (595)
|++.+++.|.++.+| .|||++|+|++.++...... ......+.+|.+.|+
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 777777777777777 77777777776665433222 223334555555553
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.4e-27 Score=248.34 Aligned_cols=229 Identities=19% Similarity=0.250 Sum_probs=189.4
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
..|+.|+|++|+|+++....|+++.+|++|+|++|+|+++.+..|++|.+|++|+|++|+|+ .++..+. .+|++|+|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 46888999999998887778899999999999999999888888999999999999999988 4454443 68999999
Q ss_pred cCCCCCCCCCccccc-cCCCeeeccCCcccc--CCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628 96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQF--GIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL 171 (595)
Q Consensus 96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~--~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l 171 (595)
++|+|++.....+.. .+|++|+|++|++.. .....+. ..+|++|++++|+++. ++..+. .+|++|+|++|++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP---PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC---TTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc---ccCCEEECCCCcC
Confidence 999988544433333 789999999998863 3444443 4689999999999885 444443 6799999999999
Q ss_pred CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccc
Q 007628 172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251 (595)
Q Consensus 172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~ 251 (595)
.+.....|..+.+|++|+|++|.|++.....|..+.+|++|+|++|+|+ .++..+..+.+|++|+|++|+|++.....+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 9888889999999999999999999887788999999999999999998 778889999999999999999998766544
Q ss_pred c
Q 007628 252 A 252 (595)
Q Consensus 252 ~ 252 (595)
+
T Consensus 284 ~ 284 (330)
T 1xku_A 284 C 284 (330)
T ss_dssp S
T ss_pred C
Confidence 3
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.7e-28 Score=261.23 Aligned_cols=248 Identities=17% Similarity=0.162 Sum_probs=207.6
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
....++.++++++. ++..+. .+|++|+|++|+|+++..+.|.+|.+|++|+|++|+|+++....|.+|.+|++|||+
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 45678999998886 455443 689999999999999999999999999999999999998888999999999999999
Q ss_pred CCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCc-ccccccchhhHHHhhccccCC
Q 007628 97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPG-SIGKMGKTLNEIILMNDNLTG 173 (595)
Q Consensus 97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~-~l~~l~~~L~~L~Ls~N~l~g 173 (595)
+|+|++.....+.. .+|++|+|++|+++......+. ..+|++|+|++|+..+.+.. .|..+ .+|++|+|++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-TTCCEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC-CCCCEEECCCCcccc
Confidence 99999544443333 7999999999999866555554 47899999999655555554 46666 899999999999986
Q ss_pred CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc
Q 007628 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA 253 (595)
Q Consensus 174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~ 253 (595)
. ..|..+.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++.....|.++.+|+.|||++|+|++........
T Consensus 211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4 46889999999999999999888999999999999999999999988999999999999999999999877665443
Q ss_pred cC-CCCcccccCCCCCCC
Q 007628 254 AG-GGGRMMAARPADCSK 270 (595)
Q Consensus 254 ~~-~~~~~~~~~~~~c~~ 270 (595)
.. .....+.+|.+.|++
T Consensus 289 l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CTTCCEEECCSSCEECST
T ss_pred ccCCCEEEccCCCcCCCC
Confidence 32 344456777777763
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=259.25 Aligned_cols=248 Identities=18% Similarity=0.199 Sum_probs=207.7
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
.++.++.++++++. ++..+. .+|+.|+|++|+|+++....|.+|.+|++|+|++|+|+++....|.+|.+|++|||+
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 35678999998886 555554 689999999999999988999999999999999999998888999999999999999
Q ss_pred CCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCc-ccccccchhhHHHhhccccCC
Q 007628 97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPG-SIGKMGKTLNEIILMNDNLTG 173 (595)
Q Consensus 97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~-~l~~l~~~L~~L~Ls~N~l~g 173 (595)
+|+|++.....+.. .+|++|+|++|+++......+. ..+|++|+|++|+..+.+.. .|..+ .+|++|+|++|+|+.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL-SNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-SSCCEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc-cccCeecCCCCcCcc
Confidence 99999544433333 8999999999999866655554 47899999999655555554 56666 899999999999984
Q ss_pred CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc
Q 007628 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA 253 (595)
Q Consensus 174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~ 253 (595)
++ .|..+.+|++|||++|+|++..+..|.++.+|++|+|++|+|++.....|.++.+|+.|||++|+|++.....+..
T Consensus 200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred -cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 44 5889999999999999999888999999999999999999999988899999999999999999999877665443
Q ss_pred c-CCCCcccccCCCCCCC
Q 007628 254 A-GGGGRMMAARPADCSK 270 (595)
Q Consensus 254 ~-~~~~~~~~~~~~~c~~ 270 (595)
. ......+.+|.+.|++
T Consensus 278 l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CTTCCEEECCSSCEECSS
T ss_pred ccCCCEEEcCCCCccCCC
Confidence 3 2344556777777764
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.4e-28 Score=250.26 Aligned_cols=247 Identities=21% Similarity=0.270 Sum_probs=206.2
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc--CchhcCCCCCCCEEEc
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK--FPKLFLSLPKLKYLDL 95 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~--lp~~l~~L~~L~~LdL 95 (595)
.+.+++++++++.+ +..+ ..+|++|+|++|+|+++....|+++.+|++|+|++|+|+.. +...+.++.+|++|||
T Consensus 9 ~~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45789999998874 4433 36899999999999976666789999999999999999833 3567778999999999
Q ss_pred cCCCCCCCCCccccc-cCCCeeeccCCccccCCC--cccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIP--ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p--~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
++|+|+ .++..+.. .+|++|+|++|++++... .+....+|++|+|++|.+++.....|..+ .+|++|+|++|.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCCCccc
Confidence 999998 45544443 899999999999987654 33345789999999999998888888888 89999999999998
Q ss_pred C-CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccc
Q 007628 173 G-CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251 (595)
Q Consensus 173 g-~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~ 251 (595)
+ .++..|..+.+|++|+|++|+|++..+..|..+.+|++|+|++|+|++.....|.++.+|++|||++|+|++......
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 7 678899999999999999999998889999999999999999999998877789999999999999999999877654
Q ss_pred ccc--CCCCcccccCCCCCC
Q 007628 252 AAA--GGGGRMMAARPADCS 269 (595)
Q Consensus 252 ~~~--~~~~~~~~~~~~~c~ 269 (595)
... ......+.+|.+.|+
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEECTTCCEECS
T ss_pred HhhhccCCEEEccCCCeecc
Confidence 443 233344555555553
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=4.5e-27 Score=245.01 Aligned_cols=227 Identities=16% Similarity=0.241 Sum_probs=199.4
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
.+.++.+|+.|+|++|+|+++.+..|+++.+|++|+|++|+|+. ++..+. .+|++|+|++|+|++.....|.++.+|
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 46788999999999999999989999999999999999999994 555444 899999999999998777889999999
Q ss_pred CEEEccCCCCCC--CCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhc
Q 007628 91 KYLDLRFNEFEG--SVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN 168 (595)
Q Consensus 91 ~~LdLs~N~l~g--~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~ 168 (595)
++|+|++|.++. .....+...+|++|+|++|++++ ++..+. .+|++|+|++|++++.....|..+ .+|++|+|++
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~ 226 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGH 226 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCS
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCC
Confidence 999999999963 44444433589999999999986 444443 689999999999999888889888 8999999999
Q ss_pred cccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCC------CCCcEEEccccc
Q 007628 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL------PNLQNFTYSFNY 242 (595)
Q Consensus 169 N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l------~~L~~L~Ls~N~ 242 (595)
|++.+.....|+.+.+|++|+|++|+|+ .++..|..+.+|++|+|++|+|++.....|..+ .+|+.|+|++|.
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 9999988889999999999999999999 888999999999999999999998766666653 679999999999
Q ss_pred CC
Q 007628 243 FT 244 (595)
Q Consensus 243 Ls 244 (595)
+.
T Consensus 306 ~~ 307 (332)
T 2ft3_A 306 VP 307 (332)
T ss_dssp SC
T ss_pred cc
Confidence 87
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.6e-27 Score=267.76 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=165.6
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
..++.|||++|+|+++.+.+|+++++|++|+|++|+|.++.+++|++|.+|++|+|++|+|++..+..|.++.+|++|||
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 35788888888888877778888888888888888888777788888888888888888888777777888888888888
Q ss_pred cCCCCCCCCCccccc-cCCCeeeccCCcccc-CCCcccCCCCceeEEeeccCCCCCcCcccccccc--------------
Q 007628 96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQF-GIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGK-------------- 159 (595)
Q Consensus 96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~-~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~-------------- 159 (595)
++|+|++.....+.. .+|++|+|++|++.+ .++.++...+|++|+|++|.+++...+.|+.+ .
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT-TTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh-cccceeEEecCCCcc
Confidence 888877543333333 677777777777775 33555555666667666666665444433333 2
Q ss_pred ---------------------------------------------------------------hhhHHHhhccccCCCCC
Q 007628 160 ---------------------------------------------------------------TLNEIILMNDNLTGCLP 176 (595)
Q Consensus 160 ---------------------------------------------------------------~L~~L~Ls~N~l~g~ip 176 (595)
+|++|++++|++.+...
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 34455555566665555
Q ss_pred CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
..|+.+.+|++|+|++|+|+ .+++.|.++.+|++|+|++|+|++..+..+.++.+|++|+|++|.+.+.+.
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 56777778888888888877 677777888888888888888877666777777777777777777765544
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3e-28 Score=276.48 Aligned_cols=229 Identities=14% Similarity=0.226 Sum_probs=170.1
Q ss_pred CCCCCceeEEEccCCCCCCC-----------------Cchhhc--CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEecc
Q 007628 12 SPSLRVVASIDLNHADIAGY-----------------LPPEIG--RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLS 72 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~-----------------lp~~~~--~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls 72 (595)
+.++.+|++|+|++|+|++. ++..|+ +|++|++|+|++|++.+.++.+|++|.+|++|+|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 45677888888888888885 777877 88888888888888888888888888888888888
Q ss_pred CCc-CCC-cCchhcCCC------CCCCEEEccCCCCCCCCCc--cccc-cCCCeeeccCCccccCCCcccCCCCceeEEe
Q 007628 73 NNR-FVG-KFPKLFLSL------PKLKYLDLRFNEFEGSVPS--KLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVF 141 (595)
Q Consensus 73 ~N~-Lsg-~lp~~l~~L------~~L~~LdLs~N~l~g~ip~--~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L 141 (595)
+|+ |+| .++..|.+| .+|++|+|++|+|+ .++. .+.. .+|++|+|++|+++|.++.+....+|++|+|
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEEC
Confidence 887 887 677777665 78888888888887 6766 4444 6788888888888877773333356777777
Q ss_pred eccCCCCCcCcccccccch-hhHHHhhccccCCCCCCccCCCc--cceEEeccCccccCCCCCCcC-------CCCCccE
Q 007628 142 ANNDLGGCIPGSIGKMGKT-LNEIILMNDNLTGCLPPQIGMLK--NLTVFDVSFNHLQGSLPSSIG-------NMKSLEQ 211 (595)
Q Consensus 142 ~~N~l~~~ip~~l~~l~~~-L~~L~Ls~N~l~g~ip~~~~~L~--~L~~LdLs~N~L~g~lP~~l~-------~L~~L~~ 211 (595)
++|+|+ .++..|+.+ .+ |++|+|++|+++ .++..|+.+. +|++|+|++|.|++.+++.|. .+.+|++
T Consensus 361 ~~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 361 AYNQIT-EIPANFCGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CSSEEE-ECCTTSEEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCccc-cccHhhhhh-cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 777777 666777777 45 777777777777 6666666654 777777777777777777666 6667777
Q ss_pred EEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628 212 LNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 212 L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls 244 (595)
|+|++|+|++.....+..+.+|++|+|++|+|+
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 777777777443344555777777777777776
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-27 Score=269.21 Aligned_cols=227 Identities=19% Similarity=0.204 Sum_probs=130.1
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+|++|+|++|+|+++....|+++.+|+.|+|++|.|+++....|++|.+|++|+|++|+|+++....|.++.+|++|+|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 44555555555555554445555555555555555555555555555555555555555555444444455555555555
Q ss_pred cCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC--------------------------------------CCCc
Q 007628 96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG--------------------------------------NSPV 136 (595)
Q Consensus 96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~--------------------------------------~~~L 136 (595)
++|.|++..+..+.. .+|++|+|++|++.+.....+. ..+|
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L 234 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence 555555444333322 4555555555554432111100 0124
Q ss_pred eeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628 137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH 216 (595)
Q Consensus 137 ~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~ 216 (595)
++|+|++|.|++. ..++.+ .+|++|+|++|.|.+.++..|+.|.+|++|+|++|.|++ ++..+..+.+|++|+|++
T Consensus 235 ~~L~L~~n~l~~~--~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 235 TILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred CEEECCCCCCCCC--hhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence 4444444544432 344444 567777777777777777777777777777777777774 455566677777777777
Q ss_pred CcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628 217 NRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 217 N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~ 247 (595)
|.|+ .++..+..+.+|+.|+|++|.|++..
T Consensus 311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 311 NHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence 7777 45566677777777777777776653
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.8e-28 Score=247.51 Aligned_cols=234 Identities=19% Similarity=0.225 Sum_probs=201.1
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-CCCcCchhcCCCCCCCEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-FVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-Lsg~lp~~l~~L~~L~~L 93 (595)
..+|+.|+|++|+|+++..+.|.++.+|++|+|++|+|+++...+|.++.+|++|+|++|+ +.+.....|.++.+|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4579999999999999888889999999999999999999889999999999999999997 887768899999999999
Q ss_pred EccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628 94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL 171 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l 171 (595)
+|++|+|++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|+|++.....|..+ .+|++|+|++|++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc-cccCEEECCCCcc
Confidence 99999999766655544 8999999999999977666554 4789999999999997777778877 8999999999999
Q ss_pred CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcc
Q 007628 172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250 (595)
Q Consensus 172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~ 250 (595)
.+..+..|..+.+|++|+|++|+|++...+.|..+.+|++|+|++|.|.+..... ..+..|+.++++.|.+.+..+..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 9998999999999999999999999776677999999999999999998754321 11233556667777777665543
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=4.4e-27 Score=263.63 Aligned_cols=110 Identities=23% Similarity=0.281 Sum_probs=89.0
Q ss_pred hhHHHhhcccc-CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcc
Q 007628 161 LNEIILMNDNL-TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYS 239 (595)
Q Consensus 161 L~~L~Ls~N~l-~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls 239 (595)
|++|+|++|++ .+.+++.|..+.+|++|||++|+|++..+.+|.+|.+|++|+|++|+|++.....|.++.+|++|||+
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 44455555543 33466778889999999999999998889999999999999999999999888899999999999999
Q ss_pred cccCCCCCCcccccc--CCCCcccccCCCCCCC
Q 007628 240 FNYFTGEPPSCTAAA--GGGGRMMAARPADCSK 270 (595)
Q Consensus 240 ~N~Lsg~~p~~~~~~--~~~~~~~~~~~~~c~~ 270 (595)
+|+|++..+...... ......+.+|++.|++
T Consensus 551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999888766543 2344557778888863
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=7e-27 Score=243.16 Aligned_cols=228 Identities=16% Similarity=0.237 Sum_probs=199.4
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
.+.++.+|++|+|++|+|+++.+..|+++.+|++|+|++|+|+. ++..+. .+|++|+|++|+|++.....|.++.+|
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccc
Confidence 35678999999999999999989999999999999999999984 555443 799999999999998888899999999
Q ss_pred CEEEccCCCCCC--CCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhh
Q 007628 91 KYLDLRFNEFEG--SVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILM 167 (595)
Q Consensus 91 ~~LdLs~N~l~g--~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls 167 (595)
++|+|++|+++. .....+.. .+|++|+|++|+++. ++..+. .+|++|+|++|++++.....|..+ .+|++|+|+
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls 224 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAASLKGL-NNLAKLGLS 224 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTGGGTTC-TTCCEEECC
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHHHhcCC-CCCCEEECC
Confidence 999999999963 33433333 799999999999985 444443 789999999999999888889888 899999999
Q ss_pred ccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccC------CCCCcEEEcccc
Q 007628 168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ------LPNLQNFTYSFN 241 (595)
Q Consensus 168 ~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~------l~~L~~L~Ls~N 241 (595)
+|++.+.....|..+.+|++|+|++|+|+ .++..+..+.+|++|+|++|+|++.....|.. +..|+.|+|++|
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence 99999888889999999999999999999 88899999999999999999999876666654 377999999999
Q ss_pred cCCC
Q 007628 242 YFTG 245 (595)
Q Consensus 242 ~Lsg 245 (595)
.+..
T Consensus 304 ~~~~ 307 (330)
T 1xku_A 304 PVQY 307 (330)
T ss_dssp SSCG
T ss_pred cccc
Confidence 9864
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.7e-27 Score=264.18 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=117.3
Q ss_pred ceecccCCCCCCCC-----CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcC
Q 007628 2 GVFCARSPFNSPSL-----RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF 76 (595)
Q Consensus 2 gv~C~~~~~~~~~l-----~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~L 76 (595)
|| |++...+...+ .+|++|||++|+|+++.+.+|.++++|++|+|++|+|+++.+++|++|.+|++|+|++|+|
T Consensus 8 ~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 8 GV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp SE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 55 77664444333 4799999999999988888899999999999999999988888999999999999999999
Q ss_pred CCcCchhcCCCCCCCEEEccCCCCCCC-CCccccc-cCCCeeeccCCccccCCC-ccc-CCCCceeEEeeccCCCCCcCc
Q 007628 77 VGKFPKLFLSLPKLKYLDLRFNEFEGS-VPSKLFD-KDLDAIFLNDNRFQFGIP-ENL-GNSPVSVLVFANNDLGGCIPG 152 (595)
Q Consensus 77 sg~lp~~l~~L~~L~~LdLs~N~l~g~-ip~~l~~-~~L~~L~L~~N~l~~~~p-~~l-~~~~L~~L~L~~N~l~~~ip~ 152 (595)
++.....|.+|.+|++|||++|+|++. ++..+.. .+|++|+|++|++.+.+. ..+ ...+|++|+|++|++++.++.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 988888899999999999999998853 3333333 678888888887544443 223 335677777777777766555
Q ss_pred ccc
Q 007628 153 SIG 155 (595)
Q Consensus 153 ~l~ 155 (595)
.|+
T Consensus 167 ~l~ 169 (549)
T 2z81_A 167 SLK 169 (549)
T ss_dssp TTT
T ss_pred hhh
Confidence 544
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=4.8e-27 Score=267.58 Aligned_cols=259 Identities=17% Similarity=0.212 Sum_probs=164.4
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCC--CCchhhcCC--CCCCEEeccCCcCCCcCchhcCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCG--VVPSTFRRL--KLLYEVDLSNNRFVGKFPKLFLS 86 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~--~lp~~~~~L--~~L~~L~Ls~N~Lsg~lp~~l~~ 86 (595)
.+..+.+|+.|+|++|+|+++....|.++.+|++|+|++|.+.+ +....|..+ .+|++|+|++|+|+++.+..|.+
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 45567888888888888888777778887777777776665322 111122211 24444444445554444445555
Q ss_pred CCCCCEEEccCCCCCCCCCccccc--------------------------cCCCeeeccCCccc--cCCCcccCC-CCce
Q 007628 87 LPKLKYLDLRFNEFEGSVPSKLFD--------------------------KDLDAIFLNDNRFQ--FGIPENLGN-SPVS 137 (595)
Q Consensus 87 L~~L~~LdLs~N~l~g~ip~~l~~--------------------------~~L~~L~L~~N~l~--~~~p~~l~~-~~L~ 137 (595)
+.+|++|||++|+|.+.++...+. .+|++|+|++|++. +.++..+.. .+|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 555555555555554433322221 34445555544443 233343333 5678
Q ss_pred eEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC--------CccCCCccceEEeccCccccCCCCCCcCCCCCc
Q 007628 138 VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP--------PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSL 209 (595)
Q Consensus 138 ~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip--------~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L 209 (595)
+|+|++|+|++.....|..+ .+|++|+|++|++++... ..|++|.+|++|+|++|+|+....+.|.+|.+|
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 88888888887666667666 678888888887764321 236777888888888888884444567888888
Q ss_pred cEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccc--ccCCCCcccccCCCCCCC
Q 007628 210 EQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA--AAGGGGRMMAARPADCSK 270 (595)
Q Consensus 210 ~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~--~~~~~~~~~~~~~~~c~~ 270 (595)
++|+|++|+|++.....|.++.+|++|+|++|+|++....... ........+.+|.+.|++
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 8888888888876666778888888888888888887665432 233444556777887764
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=3e-27 Score=251.66 Aligned_cols=231 Identities=17% Similarity=0.246 Sum_probs=168.1
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.+.++++|+|++|.|+.+....|.++++|++|+|++|+|+++....|+++.+|++|+|++|+|++..+..|.++.+|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34667777777777776655556777777777777777777666677777777777777777777667777777777777
Q ss_pred EccCCCCCCCCCcccc--ccCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccc-------------
Q 007628 94 DLRFNEFEGSVPSKLF--DKDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKM------------- 157 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~--~~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l------------- 157 (595)
||++|+|+ .++..++ ..+|++|+|++|++++.....+.. .+|++|+|++|++++.....+..+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 77777777 4444443 267777777777777665554443 567777777777665322221111
Q ss_pred -----------------------cchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEc
Q 007628 158 -----------------------GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV 214 (595)
Q Consensus 158 -----------------------~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~L 214 (595)
..+|++|+|++|++++. ..|+.+.+|++|+|++|.|++..+..|..+.+|++|+|
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 12466777777777654 56788889999999999999888888999999999999
Q ss_pred cCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 215 AHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 215 s~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
++|+|++ ++..+..+.+|++|+|++|+|++...
T Consensus 280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 312 (390)
T 3o6n_A 280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER 312 (390)
T ss_dssp CSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred CCCcCcc-cCcccCCCCCCCEEECCCCcceecCc
Confidence 9999985 55667788999999999999986543
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.6e-27 Score=260.14 Aligned_cols=230 Identities=21% Similarity=0.244 Sum_probs=161.1
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+|+.|||++|+|+++....|.++.+|++|+|++|+|+++.++.|++|.+|++|||++|+|+ .++.. .+.+|++|||
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57889999999999888888999999999999999999888888999999999999999988 45554 7888888888
Q ss_pred cCCCCCC-CCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCC--CCCcCccccccc-------------
Q 007628 96 RFNEFEG-SVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDL--GGCIPGSIGKMG------------- 158 (595)
Q Consensus 96 s~N~l~g-~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l--~~~ip~~l~~l~------------- 158 (595)
++|+|++ .++..+.. .+|++|+|++|++.+..-..+....|++|+|++|++ .+.++..|..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 8888886 35555544 778888888877764221111111225555555555 333333332210
Q ss_pred ---------------------------------------------------------------------chhhHHHhhcc
Q 007628 159 ---------------------------------------------------------------------KTLNEIILMND 169 (595)
Q Consensus 159 ---------------------------------------------------------------------~~L~~L~Ls~N 169 (595)
.+|++|+|++|
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 13444555555
Q ss_pred ccCCCCCCcc-----------------------------------------------------CCCccceEEeccCcccc
Q 007628 170 NLTGCLPPQI-----------------------------------------------------GMLKNLTVFDVSFNHLQ 196 (595)
Q Consensus 170 ~l~g~ip~~~-----------------------------------------------------~~L~~L~~LdLs~N~L~ 196 (595)
++.|.++..+ ..+.+|++|+|++|+|+
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred cccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccC
Confidence 5555444443 45667777888888887
Q ss_pred CCCCCCcCCCCCccEEEccCCcCCC--CCchhccCCCCCcEEEcccccCCCCCC
Q 007628 197 GSLPSSIGNMKSLEQLNVAHNRFTG--VIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 197 g~lP~~l~~L~~L~~L~Ls~N~Lsg--~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
+.++..|+.+.+|++|+|++|+|++ .++..|+++.+|++|+|++|.|++.++
T Consensus 338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 7777777788888888888888876 455667777788888888888777443
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2.3e-27 Score=266.41 Aligned_cols=251 Identities=18% Similarity=0.147 Sum_probs=183.1
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc--CchhcCCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK--FPKLFLSLPK 89 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~--lp~~l~~L~~ 89 (595)
+..+.+|+.|+|++|++ +.++ .+ ++.+|++|+|++|++.+.+ .+.++.+|++|+|++|+|++. +...+.++.+
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 34455666666666666 3344 34 6666666666666444333 566778888888888887755 3677788888
Q ss_pred CCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCC-ccc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHh
Q 007628 90 LKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIP-ENL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIIL 166 (595)
Q Consensus 90 L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p-~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~L 166 (595)
|++|+|++|++++ ++..+.. .+|++|+|++|++.+... ..+ ...+|++|+|++|++++.++..|+.+ .+|++|+|
T Consensus 378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l 455 (606)
T 3vq2_A 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKM 455 (606)
T ss_dssp CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEEC
T ss_pred ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-CCCCEEEC
Confidence 8888888888774 3333333 788888888888887765 333 34678888888888888888888877 78888888
Q ss_pred hccccCC-CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCC
Q 007628 167 MNDNLTG-CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 167 s~N~l~g-~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg 245 (595)
++|++.+ .++..|+.+.+|++|+|++|+|++..++.|+++.+|++|+|++|+|++.++..|.++.+|++|||++|+|+.
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 8888887 467888888889999999998888888888888889999999998888888888888889999999998885
Q ss_pred CCCcccccc-CCCCcccccCCCCCC
Q 007628 246 EPPSCTAAA-GGGGRMMAARPADCS 269 (595)
Q Consensus 246 ~~p~~~~~~-~~~~~~~~~~~~~c~ 269 (595)
......... ......+.+|.+.|+
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCCCCCS
T ss_pred cCHhHhhhcccCcEEEccCCCcccC
Confidence 433322221 134445666666664
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1e-26 Score=235.60 Aligned_cols=214 Identities=18% Similarity=0.225 Sum_probs=169.6
Q ss_pred ceecccCCCCCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCc
Q 007628 2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP 81 (595)
Q Consensus 2 gv~C~~~~~~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp 81 (595)
|+.|.|. ..++.|++++++|+. ++..+. .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++..
T Consensus 9 ~~~C~c~-------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 9 GGVCSCN-------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp TCSBEEE-------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred CCCCEeC-------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 5667664 356799999999987 455444 689999999999998888899999999999999999997777
Q ss_pred hhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchh
Q 007628 82 KLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTL 161 (595)
Q Consensus 82 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L 161 (595)
..|.++.+|++|+|++|+|++.....+.. ..+|++|+|++|+|++.....|..+ .+|
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~l-~~L 135 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQ----------------------LVNLAELRLDRNQLKSLPPRVFDSL-TKL 135 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTT----------------------CSSCCEEECCSSCCCCCCTTTTTTC-TTC
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHccc----------------------ccCCCEEECCCCccCeeCHHHhCcC-cCC
Confidence 77899999999999999998433222211 1334455555555555555555555 677
Q ss_pred hHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccc
Q 007628 162 NEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241 (595)
Q Consensus 162 ~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N 241 (595)
++|+|++|+|.+.....|..+.+|++|+|++|+|++.....|..+.+|++|+|++|+|++.....|..+.+|+.|+|++|
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 88888888887666667888999999999999999777777899999999999999999777777888999999999999
Q ss_pred cCCCCCC
Q 007628 242 YFTGEPP 248 (595)
Q Consensus 242 ~Lsg~~p 248 (595)
.|.+...
T Consensus 216 ~~~c~c~ 222 (270)
T 2o6q_A 216 PWDCTCN 222 (270)
T ss_dssp CBCCSSS
T ss_pred CeeCCCc
Confidence 9987643
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.1e-26 Score=259.26 Aligned_cols=230 Identities=17% Similarity=0.220 Sum_probs=167.8
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+|+.|||++|+|+++...+|.++.+|++|+|++|+|+++.+++|++|.+|++|||++|+|+ .++.. .+.+|++|||
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57899999999999888889999999999999999999888889999999999999999988 55554 7889999999
Q ss_pred cCCCCCCC-CCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCC--CCCcCccccccc-------------
Q 007628 96 RFNEFEGS-VPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDL--GGCIPGSIGKMG------------- 158 (595)
Q Consensus 96 s~N~l~g~-ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l--~~~ip~~l~~l~------------- 158 (595)
++|+|++. ++..+.. .+|++|+|++|++++..-..+....|++|+|++|.+ ++..+..|..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 99998852 3344443 788888888888875332222222347777777776 555554444321
Q ss_pred -------------------------------------------------------------------chhhHHHhhcccc
Q 007628 159 -------------------------------------------------------------------KTLNEIILMNDNL 171 (595)
Q Consensus 159 -------------------------------------------------------------------~~L~~L~Ls~N~l 171 (595)
.+|++|++++|++
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 1455666666666
Q ss_pred CCCCCCcc-----------------------------------------------------CCCccceEEeccCccccCC
Q 007628 172 TGCLPPQI-----------------------------------------------------GMLKNLTVFDVSFNHLQGS 198 (595)
Q Consensus 172 ~g~ip~~~-----------------------------------------------------~~L~~L~~LdLs~N~L~g~ 198 (595)
.|.++..+ +.+.+|++|+|++|+|++.
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc
Confidence 66665544 5566777778888877777
Q ss_pred CCCCcCCCCCccEEEccCCcCCCC--CchhccCCCCCcEEEcccccCCCCCC
Q 007628 199 LPSSIGNMKSLEQLNVAHNRFTGV--IPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 199 lP~~l~~L~~L~~L~Ls~N~Lsg~--iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
++..|+++.+|++|+|++|+|++. ++..|.++.+|++|+|++|+|++.++
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence 777777777788888888777752 34557777777777777777776443
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=270.42 Aligned_cols=236 Identities=20% Similarity=0.216 Sum_probs=119.5
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchh--hcCCCCCCEEeccCCcCCCcCc-hhcCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPST--FRRLKLLYEVDLSNNRFVGKFP-KLFLSLP 88 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~--~~~L~~L~~L~Ls~N~Lsg~lp-~~l~~L~ 88 (595)
+.++.+|++|+|++|+|+++.++.|++|.+|++|+|++|+|++.+... |++|.+|++|+|++|+|++... ..|.+|.
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 445555555555555555555555555555555555555555544333 5555566666666665554432 3455566
Q ss_pred CCCEEEccCCCCCCCCCccccc---cCCCeeeccCCccccCCCcccCC-------CCceeEEeeccCCCCCcCcccccc-
Q 007628 89 KLKYLDLRFNEFEGSVPSKLFD---KDLDAIFLNDNRFQFGIPENLGN-------SPVSVLVFANNDLGGCIPGSIGKM- 157 (595)
Q Consensus 89 ~L~~LdLs~N~l~g~ip~~l~~---~~L~~L~L~~N~l~~~~p~~l~~-------~~L~~L~L~~N~l~~~ip~~l~~l- 157 (595)
+|++|+|++|.|++.....+.. .+|+.|+|++|.+.+.+...+.. ..|++|+|++|++++.+...+.+.
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 6666666666555444433322 34444444444444333222111 125555555555444333322211
Q ss_pred ------------------------------------cchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCC
Q 007628 158 ------------------------------------GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPS 201 (595)
Q Consensus 158 ------------------------------------~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~ 201 (595)
..+|++|+|++|.+.+.....|..+.+|++|+|++|+|++..+.
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 02345555555555554455555555555555555555555555
Q ss_pred CcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628 202 SIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 202 ~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~ 247 (595)
+|..+.+|++|+|++|+|++..+..|.++.+|+.|+|++|+|++..
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence 5555555555555555555544555555555555555555554433
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=7.3e-27 Score=236.86 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=134.8
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~ 97 (595)
|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+|++.....|.++.+|++|+|++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 55555555555554444555555555555555555544444555555555555555555544444555555555555555
Q ss_pred CCCCCCCCccccccCCCeeeccCCccccCCCccc-CCCCceeEEeeccCCCCC-cCcccccccchhhHHHhhccccCCCC
Q 007628 98 NEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFANNDLGGC-IPGSIGKMGKTLNEIILMNDNLTGCL 175 (595)
Q Consensus 98 N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~~~-ip~~l~~l~~~L~~L~Ls~N~l~g~i 175 (595)
|+|+ +.....+ ...+|++|+|++|++++. ++..|+.+ .+|++|+|++|++++..
T Consensus 110 n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 110 TNLA-----------------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp SCCC-----------------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEEC
T ss_pred CCcc-----------------------ccCchhcccCCCCCEEECcCCccceecCchhhccC-CCCCEEECCCCCCCcCC
Confidence 5554 3322222 224566666666666653 46666666 67777888887777666
Q ss_pred CCccCCCccce----EEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 176 PPQIGMLKNLT----VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 176 p~~~~~L~~L~----~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
...|..+.+|+ +|+|++|.|++.....+. ..+|++|+|++|+|++.....|.++.+|+.|+|++|.|++...
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 66666666666 899999999965555554 4589999999999998777778999999999999999998765
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.2e-28 Score=251.10 Aligned_cols=202 Identities=19% Similarity=0.233 Sum_probs=126.3
Q ss_pred CCCCCcEEEccCCcCCCCCchhh--cCCCCCCEEeccCCcCCCcCchhcCCC-----CCCCEEEccCCCCCCCCCccccc
Q 007628 38 RLTDLAIFHINSNRFCGVVPSTF--RRLKLLYEVDLSNNRFVGKFPKLFLSL-----PKLKYLDLRFNEFEGSVPSKLFD 110 (595)
Q Consensus 38 ~L~~L~~L~Ls~N~l~~~lp~~~--~~L~~L~~L~Ls~N~Lsg~lp~~l~~L-----~~L~~LdLs~N~l~g~ip~~l~~ 110 (595)
++.+|++|+|++|+|++.++..+ +++.+|++|+|++|+|++. +..|.++ .+|++|+|++|+|++.....+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56677777777777776666655 6677777777777777655 5555554 67777777777776555444433
Q ss_pred -cCCCeeeccCCccccCC--C-cc--cCCCCceeEEeeccCCCC--CcCcccccccchhhHHHhhccccCCCCC-CccCC
Q 007628 111 -KDLDAIFLNDNRFQFGI--P-EN--LGNSPVSVLVFANNDLGG--CIPGSIGKMGKTLNEIILMNDNLTGCLP-PQIGM 181 (595)
Q Consensus 111 -~~L~~L~L~~N~l~~~~--p-~~--l~~~~L~~L~L~~N~l~~--~ip~~l~~l~~~L~~L~Ls~N~l~g~ip-~~~~~ 181 (595)
.+|++|+|++|++.+.+ . .. ....+|++|+|++|+|++ .+...++....+|++|+|++|++.+.++ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 66777777777665431 1 11 233567777777777663 2222222222567777777777776553 34555
Q ss_pred CccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCC
Q 007628 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 182 L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg 245 (595)
+.+|++|+|++|+|+ .++..+. .+|++|+|++|+|++. +. +..+.+|++|+|++|.|++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 667777777777776 5666555 6677777777777654 33 6667777777777777765
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.6e-26 Score=263.22 Aligned_cols=232 Identities=21% Similarity=0.256 Sum_probs=196.4
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
..|+.|+|++|+|+++....|..+.+|++|+|++|+|.+.+. ..|.++.+|++|+|++|++.+.....|..+.+|++|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 357778888888888888888899999999999999887555 6788999999999999998888888888999999999
Q ss_pred ccCCCCC--CCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCc--------ccccccchhh
Q 007628 95 LRFNEFE--GSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPG--------SIGKMGKTLN 162 (595)
Q Consensus 95 Ls~N~l~--g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~--------~l~~l~~~L~ 162 (595)
|++|.+. +.++..+.. .+|++|+|++|++++.....+. ..+|++|+|++|++++.... .|..+ .+|+
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l-~~L~ 539 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL-SHLH 539 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC-TTCC
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC-CCCC
Confidence 9999886 455555544 7899999999999977766554 47899999999999865322 25556 7899
Q ss_pred HHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhcc-CCCCCcEEEcccc
Q 007628 163 EIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVC-QLPNLQNFTYSFN 241 (595)
Q Consensus 163 ~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~-~l~~L~~L~Ls~N 241 (595)
+|+|++|++.......|.+|.+|++|||++|+|++.....|..+.+|++|+|++|+|++.....|. .+.+|+.|+|++|
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 999999999965556799999999999999999977777789999999999999999998888887 7899999999999
Q ss_pred cCCCCCC
Q 007628 242 YFTGEPP 248 (595)
Q Consensus 242 ~Lsg~~p 248 (595)
.|.+...
T Consensus 620 ~~~c~c~ 626 (680)
T 1ziw_A 620 PFDCTCE 626 (680)
T ss_dssp CCCBCCC
T ss_pred CcccCCc
Confidence 9988754
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.2e-27 Score=246.64 Aligned_cols=246 Identities=17% Similarity=0.191 Sum_probs=199.7
Q ss_pred eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCC
Q 007628 19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98 (595)
Q Consensus 19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N 98 (595)
.+.|+++++++. ++..+. .+|++|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|||++|
T Consensus 34 ~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 34 GICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp SEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 358999999987 455554 48999999999999888779999999999999999999888889999999999999999
Q ss_pred CCCCCCCcc-ccc-cCCCeeeccCCccccCCC-ccc-CCCCceeEEeeccC-CCCCcCcccccccchhhHHHhhccccCC
Q 007628 99 EFEGSVPSK-LFD-KDLDAIFLNDNRFQFGIP-ENL-GNSPVSVLVFANND-LGGCIPGSIGKMGKTLNEIILMNDNLTG 173 (595)
Q Consensus 99 ~l~g~ip~~-l~~-~~L~~L~L~~N~l~~~~p-~~l-~~~~L~~L~L~~N~-l~~~ip~~l~~l~~~L~~L~Ls~N~l~g 173 (595)
+|++ +... +.. .+|++|+|++|++++... ..+ ...+|++|++++|+ +++.....|+.+ .+|++|+|++|++.+
T Consensus 111 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 111 YLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQS 188 (353)
T ss_dssp CCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCE
T ss_pred cCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEEECCCCCcCc
Confidence 9994 5544 333 799999999999985444 234 45789999999995 666667778887 899999999999999
Q ss_pred CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCC-------------------------------
Q 007628 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV------------------------------- 222 (595)
Q Consensus 174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~------------------------------- 222 (595)
..+..|+++.+|++|+|++|.++......+..+.+|++|+|++|+|++.
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 9899999999999999999999743333445689999999999999873
Q ss_pred CchhccCCCCCcEEEcccccCCCCCCccc-cccCCCCcccccCCCCCC
Q 007628 223 IPSSVCQLPNLQNFTYSFNYFTGEPPSCT-AAAGGGGRMMAARPADCS 269 (595)
Q Consensus 223 iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~-~~~~~~~~~~~~~~~~c~ 269 (595)
++..|.++.+|++|||++|+|+....... .........+.+|.+.|+
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 34567889999999999999996544432 223344455666666665
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=269.17 Aligned_cols=236 Identities=19% Similarity=0.184 Sum_probs=174.8
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCC-chhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVV-PSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~l-p~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
.+|+.|||++|+|+++....|.+|.+|++|+|++|.+.+.+ +.+|++|.+|++|+|++|+|+++.++.|.+|.+|++||
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 56888899988888888888888888888888888655544 67788888888888888888877788888888888888
Q ss_pred ccCCCCCCCCCcc--ccc-cCCCeeeccCCccccCCC-ccc-CCCCceeEEeeccCCCCCcCccccccc-ch--------
Q 007628 95 LRFNEFEGSVPSK--LFD-KDLDAIFLNDNRFQFGIP-ENL-GNSPVSVLVFANNDLGGCIPGSIGKMG-KT-------- 160 (595)
Q Consensus 95 Ls~N~l~g~ip~~--l~~-~~L~~L~L~~N~l~~~~p-~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~-~~-------- 160 (595)
|++|+|++.+... +.. .+|++|+|++|++++... ..+ ...+|++|+|++|.|++.....|+.+. .+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 8888888755443 222 678888888888876543 233 346788888888887776666554431 22
Q ss_pred ----------------------hhHHHhhccccCCCCCCccCC-------------------------------------
Q 007628 161 ----------------------LNEIILMNDNLTGCLPPQIGM------------------------------------- 181 (595)
Q Consensus 161 ----------------------L~~L~Ls~N~l~g~ip~~~~~------------------------------------- 181 (595)
|++|+|++|++.+.+...|..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 555555555554443332221
Q ss_pred -CccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccc
Q 007628 182 -LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251 (595)
Q Consensus 182 -L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~ 251 (595)
+.+|++|+|++|.+.+.....|..+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|++......
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 1467778888888777777788888899999999999988888888889999999999999887755433
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=6.3e-27 Score=262.84 Aligned_cols=231 Identities=16% Similarity=0.154 Sum_probs=205.7
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCC--CchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV--VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~--lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~ 91 (595)
.+.+|+.|+|++|.+.+.+ .++.+.+|++|+|++|+|++. +...|.++.+|++|+|++|++++ ++..|.++.+|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 402 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence 7789999999999655433 788999999999999999876 48899999999999999999985 558899999999
Q ss_pred EEEccCCCCCCCCCcc-ccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCC-CcCcccccccchhhHHHhh
Q 007628 92 YLDLRFNEFEGSVPSK-LFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGG-CIPGSIGKMGKTLNEIILM 167 (595)
Q Consensus 92 ~LdLs~N~l~g~ip~~-l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~-~ip~~l~~l~~~L~~L~Ls 167 (595)
+|+|++|++.+..+.. +.. .+|++|+|++|++.+..+..+.. .+|++|+|++|++++ .++..|+.+ .+|++|+|+
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls 481 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLS 481 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC-CCCCEEECC
Confidence 9999999999877633 333 89999999999999888777654 789999999999998 478888888 899999999
Q ss_pred ccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC-CCcEEEcccccCCCC
Q 007628 168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP-NLQNFTYSFNYFTGE 246 (595)
Q Consensus 168 ~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~-~L~~L~Ls~N~Lsg~ 246 (595)
+|++++..+..|+.|.+|++|+|++|+|++.++..|++|.+|++|+|++|+|+ .++..|..+. +|++|+|++|.|.+.
T Consensus 482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 99999999999999999999999999999988999999999999999999999 6777788886 699999999999986
Q ss_pred CCc
Q 007628 247 PPS 249 (595)
Q Consensus 247 ~p~ 249 (595)
...
T Consensus 561 c~~ 563 (606)
T 3vq2_A 561 CEH 563 (606)
T ss_dssp STT
T ss_pred Ccc
Confidence 654
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=252.78 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=63.5
Q ss_pred hhhHHHhhccccCCCCCCccCCCccceEEeccCcccc-CCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEc
Q 007628 160 TLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ-GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY 238 (595)
Q Consensus 160 ~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~-g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~L 238 (595)
+|++|+|++|.+.+.++..|.++.+|++|+|++|.++ +.++..|+.+.+|++|+|++|+|++..+..|.++.+|++|+|
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 3444444445444445555556666666666666665 456666666666777777777766666666677777777777
Q ss_pred ccccCCCCCCcccccc-CCCCcccccCCCCCC
Q 007628 239 SFNYFTGEPPSCTAAA-GGGGRMMAARPADCS 269 (595)
Q Consensus 239 s~N~Lsg~~p~~~~~~-~~~~~~~~~~~~~c~ 269 (595)
++|+|++......... ......+.+|.+.|+
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 7777766655433222 222333444444443
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.2e-26 Score=259.20 Aligned_cols=230 Identities=17% Similarity=0.251 Sum_probs=194.3
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.+.++++|+|++|.|..+....|.+|.+|++|+|++|+|.++....|++|.+|++|+|++|+|++..+..|.+|.+|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45778999999999998877788999999999999999999988899999999999999999999888899999999999
Q ss_pred EccCCCCCCCCCcccc-c-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccc-------------
Q 007628 94 DLRFNEFEGSVPSKLF-D-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKM------------- 157 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~-~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l------------- 157 (595)
+|++|+|+ .++..++ . .+|++|+|++|++.+.....+.. .+|++|+|++|.|++.....+..+
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence 99999999 4554443 3 89999999999999888776654 789999999999986533322211
Q ss_pred -----------------------cchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEc
Q 007628 158 -----------------------GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV 214 (595)
Q Consensus 158 -----------------------~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~L 214 (595)
..+|+.|+|++|.+++. ..|+.+.+|++|+|++|.|++.++..|+.|.+|++|+|
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 12356666667766653 66888899999999999999888999999999999999
Q ss_pred cCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628 215 AHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 215 s~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~ 247 (595)
++|+|++ ++..+..+.+|+.|+|++|.|++..
T Consensus 286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~ 317 (597)
T 3oja_B 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVE 317 (597)
T ss_dssp TTSCCCE-EECSSSCCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCC-CCcccccCCCCcEEECCCCCCCccC
Confidence 9999986 5677778899999999999998643
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2.4e-26 Score=256.61 Aligned_cols=235 Identities=22% Similarity=0.192 Sum_probs=173.9
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc-CchhcCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK-FPKLFLSLPK 89 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~-lp~~l~~L~~ 89 (595)
.+.++.+|++|+|++|+|+++.++.|.++.+|++|||++|+|+. ++.. .+.+|++|+|++|+|++. ++..|.+|.+
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCc
Confidence 46788999999999999999889999999999999999999994 5554 899999999999999863 4578999999
Q ss_pred CCEEEccCCCCCCCCCccccccCCCeeeccCCcc--ccCCCcccCC----------------------------------
Q 007628 90 LKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRF--QFGIPENLGN---------------------------------- 133 (595)
Q Consensus 90 L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l--~~~~p~~l~~---------------------------------- 133 (595)
|++|||++|+|++..-..+...+|++|+|++|++ ++..+..+..
T Consensus 148 L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp CCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred ccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 9999999999875322222112337777777666 3332222111
Q ss_pred ------------------------------------------------CCceeEEeeccCCCCCcCccc-----------
Q 007628 134 ------------------------------------------------SPVSVLVFANNDLGGCIPGSI----------- 154 (595)
Q Consensus 134 ------------------------------------------------~~L~~L~L~~N~l~~~ip~~l----------- 154 (595)
.+|++|++++|.++|.++..+
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 156666666676666665544
Q ss_pred ------------------------------------------ccccchhhHHHhhccccCCCCCCccCCCccceEEeccC
Q 007628 155 ------------------------------------------GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSF 192 (595)
Q Consensus 155 ------------------------------------------~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~ 192 (595)
..+ .+|++|+|++|++++.++.+|+++.+|++|+|++
T Consensus 308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP-SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC-CCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence 223 5778888888888887888888888888888888
Q ss_pred ccccC--CCCCCcCCCCCccEEEccCCcCCCCCch-hccCCCCCcEEEcccccCCCCCCc
Q 007628 193 NHLQG--SLPSSIGNMKSLEQLNVAHNRFTGVIPS-SVCQLPNLQNFTYSFNYFTGEPPS 249 (595)
Q Consensus 193 N~L~g--~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~-~l~~l~~L~~L~Ls~N~Lsg~~p~ 249 (595)
|+|++ .++..|+.+.+|++|+|++|+|++.++. .+..+.+|++|+|++|+|++.+..
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh
Confidence 88875 2345678888888888888888874443 466777777777777777665443
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-27 Score=245.76 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=178.1
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.+.+|+.|||++|+|+++....|.++.+|++|+|++|+|++... |.++.+|++|+|++|+|++.. .+.+|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 34578999999999998888889999999999999999987654 888999999999999887432 34789999
Q ss_pred EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
+|++|+|++..... ..+|++|+|++|++++.....+. ..+|++|+|++|.|++.....+.....+|++|+|++|+|+
T Consensus 105 ~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp ECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 99999988544332 26799999999999876665554 4679999999999998777777543378999999999988
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls 244 (595)
+. ..+..+.+|++|+|++|+|++ ++..|..+.+|++|+|++|+|+ .++..+..+.+|+.|+|++|.|+
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 183 DV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 55 334458899999999999984 5556889999999999999998 46778889999999999999998
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.5e-27 Score=242.69 Aligned_cols=240 Identities=10% Similarity=0.069 Sum_probs=197.4
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
..++.++++++++...+...+..+.+|++|+|++|+|+++....|.++.+|++|+|++|+|++... |.++.+|++|||
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 468889999999887777778888899999999999999888999999999999999999997664 999999999999
Q ss_pred cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628 96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL 175 (595)
Q Consensus 96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i 175 (595)
++|+|++.. ...+|++|+|++|++++..... ..+|++|+|++|+|++.....++.+ .+|++|+|++|++.+..
T Consensus 88 s~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 88 NNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSEEEEEE----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEE
T ss_pred cCCcccccc----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCccc
Confidence 999988422 2279999999999998765544 3579999999999999888888887 89999999999999877
Q ss_pred CCccC-CCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccccc
Q 007628 176 PPQIG-MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAA 254 (595)
Q Consensus 176 p~~~~-~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~ 254 (595)
...|. .+.+|++|+|++|.|++. ..+..+.+|++|+|++|+|++. +..|..+.+|++|+|++|.|++.........
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~ 237 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred HHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCC
Confidence 77764 789999999999999855 3344589999999999999965 4558999999999999999996433322222
Q ss_pred CCCCcccccCCCC
Q 007628 255 GGGGRMMAARPAD 267 (595)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (595)
......+.+|.+.
T Consensus 238 ~L~~L~l~~N~~~ 250 (317)
T 3o53_A 238 NLEHFDLRGNGFH 250 (317)
T ss_dssp TCCEEECTTCCCB
T ss_pred CCCEEEccCCCcc
Confidence 2333334444444
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3e-26 Score=252.76 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=52.7
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCC-CCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCG-VVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~-~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
+.++.+|++|||++|+|++ ++.. .+.+|++|+|++|+|++ .++..|++|.+|++|+|++|+|++ ..|..+.+|
T Consensus 65 ~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L 138 (520)
T 2z7x_B 65 FKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL 138 (520)
T ss_dssp GTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS
T ss_pred hhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc
Confidence 4566777777777777774 3333 67777777777777776 356777777777777777777654 233333444
Q ss_pred --CEEEccCCCC
Q 007628 91 --KYLDLRFNEF 100 (595)
Q Consensus 91 --~~LdLs~N~l 100 (595)
++|+|++|++
T Consensus 139 ~L~~L~l~~n~l 150 (520)
T 2z7x_B 139 NISKVLLVLGET 150 (520)
T ss_dssp CEEEEEEEECTT
T ss_pred eeeEEEeecccc
Confidence 4555544444
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=3.8e-26 Score=266.55 Aligned_cols=229 Identities=15% Similarity=0.186 Sum_probs=180.2
Q ss_pred CCCCCCceeEEEccCCCCCC-----------------CCchhhc--CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEec
Q 007628 11 NSPSLRVVASIDLNHADIAG-----------------YLPPEIG--RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~-----------------~lp~~~~--~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~L 71 (595)
.+.+|.+|+.|+|++|+|++ .++..|+ +|.+|++|+|++|++.+.++..|++|.+|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 35678889999999999998 3788877 9999999999999999999999999999999999
Q ss_pred cCCc-CCC-cCchhcCCCC-------CCCEEEccCCCCCCCCCc--cccc-cCCCeeeccCCccccCCCcccCCCCceeE
Q 007628 72 SNNR-FVG-KFPKLFLSLP-------KLKYLDLRFNEFEGSVPS--KLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVL 139 (595)
Q Consensus 72 s~N~-Lsg-~lp~~l~~L~-------~L~~LdLs~N~l~g~ip~--~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L 139 (595)
++|+ |+| .++..|.+|. +|++|+|++|+|+ .++. .+.. .+|++|+|++|+++ .++.+....+|++|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEE
Confidence 9998 887 6776665554 8999999999998 7777 4544 78999999999988 66644445678899
Q ss_pred EeeccCCCCCcCcccccccch-hhHHHhhccccCCCCCCccCCCcc--ceEEeccCccccCCCCCCc---C--CCCCccE
Q 007628 140 VFANNDLGGCIPGSIGKMGKT-LNEIILMNDNLTGCLPPQIGMLKN--LTVFDVSFNHLQGSLPSSI---G--NMKSLEQ 211 (595)
Q Consensus 140 ~L~~N~l~~~ip~~l~~l~~~-L~~L~Ls~N~l~g~ip~~~~~L~~--L~~LdLs~N~L~g~lP~~l---~--~L~~L~~ 211 (595)
+|++|+|+ .++..|+.+ .+ |++|+|++|+|. .++..|..+.. |++|+|++|+|+|.++... . .+.+|++
T Consensus 601 ~Ls~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAF-TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp ECCSSCCS-CCCTTSCEE-CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred ECcCCccc-cchHHHhhc-cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 99999988 788888888 55 999999999888 77777777654 8888888888887655322 2 2347778
Q ss_pred EEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628 212 LNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 212 L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls 244 (595)
|+|++|+|++.....+..+.+|+.|+|++|+|+
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 888888777433333446777777777777777
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.9e-26 Score=255.70 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=100.4
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc-CchhcCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK-FPKLFLSLPK 89 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~-lp~~l~~L~~ 89 (595)
.+.++.+|++|+|++|+|+++.++.|+++.+|++|+|++|+|+++....|++|.+|++|+|++|+|++. ++..|.++.+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 467889999999999999998888999999999999999999988888899999999999999999863 4667888999
Q ss_pred CCEEEccCCCCCCCCCccccc--cCCCeeeccCCccccCCCccc
Q 007628 90 LKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENL 131 (595)
Q Consensus 90 L~~LdLs~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l 131 (595)
|++|+|++|++.+.++...+. .+|++|+|++|++++.++..+
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 999999999865566543332 678888888888776655544
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.8e-28 Score=249.06 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=184.0
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCC-CCCchhhc-------CCCCCCEEeccCCcCCCcCchhc--
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFC-GVVPSTFR-------RLKLLYEVDLSNNRFVGKFPKLF-- 84 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~-~~lp~~~~-------~L~~L~~L~Ls~N~Lsg~lp~~l-- 84 (595)
+++|+.|+|++|++ .++..+... |+.|+|++|+|. +.+...+. ++.+|++|+|++|+|++.++..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45678888999999 567777665 899999999994 45666665 89999999999999999888876
Q ss_pred CCCCCCCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCC--cCccc-
Q 007628 85 LSLPKLKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGC--IPGSI- 154 (595)
Q Consensus 85 ~~L~~L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~--ip~~l- 154 (595)
.++.+|++|||++|+|++. +..+.. .+|++|+|++|++.+.....+.. .+|++|+|++|++.+. +...+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8999999999999999976 544432 68999999999999887666654 7899999999998765 23333
Q ss_pred -ccccchhhHHHhhccccCCC--C-CCccCCCccceEEeccCccccCCCC-CCcCCCCCccEEEccCCcCCCCCchhccC
Q 007628 155 -GKMGKTLNEIILMNDNLTGC--L-PPQIGMLKNLTVFDVSFNHLQGSLP-SSIGNMKSLEQLNVAHNRFTGVIPSSVCQ 229 (595)
Q Consensus 155 -~~l~~~L~~L~Ls~N~l~g~--i-p~~~~~L~~L~~LdLs~N~L~g~lP-~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~ 229 (595)
+.+ .+|++|+|++|+|++. + ...+..+.+|++|||++|+|++..+ ..+..+.+|++|+|++|+|+ .++..+.
T Consensus 197 ~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 197 PLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp TTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred hccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 555 7899999999999832 2 2334577999999999999998774 56677899999999999999 6777666
Q ss_pred CCCCcEEEcccccCCCC
Q 007628 230 LPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 230 l~~L~~L~Ls~N~Lsg~ 246 (595)
.+|++|||++|+|++.
T Consensus 274 -~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp -SEEEEEECCSSCCCSC
T ss_pred -CCceEEECCCCCCCCC
Confidence 7899999999999987
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.5e-26 Score=234.68 Aligned_cols=224 Identities=17% Similarity=0.190 Sum_probs=167.4
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
+.++..+++.++.+.+. ..+.++.+|+.|++++|.|... ..|+++.+|++|+|++|+|++. ..|.++.+|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 34455566666666654 3456677788888888877743 3577788888888888887753 3677788888888
Q ss_pred ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
|++|+|++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|+|++.....|..+ .+|++|+|++|+++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQLQ 170 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-ccCCEEECCCCCcC
Confidence 8888887544443332 6777777777777765555443 3678888888888887666666666 78888888888888
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccc
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA 252 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~ 252 (595)
+.....|+.|.+|++|+|++|+|++.....|..+.+|++|+|++|.+.+. +.+|++|++++|.++|.++...+
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 77777788889999999999999887777788899999999999988754 45788889999999988876544
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-26 Score=252.61 Aligned_cols=218 Identities=19% Similarity=0.232 Sum_probs=189.0
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.+.+|+.|+|++|+|+++.+..|+++.+|++|+|++|.|++... |++|.+|++|+|++|+|++.. .+.+|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 44589999999999999888999999999999999999997665 999999999999999998543 34899999
Q ss_pred EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
+|++|+|++..... ..+|+.|+|++|++++..+..+. ..+|++|+|++|.|++.++..|+....+|++|+|++|.|+
T Consensus 105 ~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 99999999655433 26899999999999988776665 4789999999999999888888743389999999999998
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls 244 (595)
+. ..+..+.+|++|||++|.|++ ++..|..+.+|+.|+|++|+|++ ++..+..+.+|+.|+|++|.|.
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 66 334568999999999999996 45558999999999999999995 6788999999999999999998
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.7e-26 Score=253.26 Aligned_cols=238 Identities=21% Similarity=0.191 Sum_probs=192.8
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhh-------------------cCCCCCCEEecc
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTF-------------------RRLKLLYEVDLS 72 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~-------------------~~L~~L~~L~Ls 72 (595)
+..+.+|+.|+|++|++++ ++..+..+ +|+.|+|++|++..+-...+ ..+.+|++|+|+
T Consensus 278 ~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~ 355 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355 (570)
T ss_dssp TGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECC
T ss_pred hcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCc
Confidence 4456777788888777774 55556666 66666666666652211111 567888888888
Q ss_pred CCcCCCcC--chhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCc--ccCCCCceeEEeeccCCCC
Q 007628 73 NNRFVGKF--PKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE--NLGNSPVSVLVFANNDLGG 148 (595)
Q Consensus 73 ~N~Lsg~l--p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~--~l~~~~L~~L~L~~N~l~~ 148 (595)
+|+|++.. ...+.++.+|++|+|++|++.+.........+|++|+|++|++.+.... +....+|++|+|++|.+.+
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 88888553 6778889999999999999885444322227899999999999876652 2344789999999999999
Q ss_pred CcCcccccccchhhHHHhhccccC-CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhc
Q 007628 149 CIPGSIGKMGKTLNEIILMNDNLT-GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSV 227 (595)
Q Consensus 149 ~ip~~l~~l~~~L~~L~Ls~N~l~-g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l 227 (595)
.+...|..+ .+|++|+|++|.+. +.++..|+.+.+|++|+|++|+|++..+.+|+.+.+|++|+|++|+|++.....|
T Consensus 436 ~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 436 AFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp CCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 998888888 89999999999998 6788999999999999999999998889999999999999999999999888889
Q ss_pred cCCCCCcEEEcccccCCCCCCcccc
Q 007628 228 CQLPNLQNFTYSFNYFTGEPPSCTA 252 (595)
Q Consensus 228 ~~l~~L~~L~Ls~N~Lsg~~p~~~~ 252 (595)
.++.+|++|+|++|.|+|.++....
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred hcccCCcEEEecCCcccCCCcchHH
Confidence 9999999999999999998775443
No 58
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=5.5e-25 Score=229.88 Aligned_cols=222 Identities=18% Similarity=0.272 Sum_probs=134.5
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~ 91 (595)
+.++.+|++|+|++|+|+++ ..|.++.+|++|+|++|+|.++.. |.++.+|++|+|++|.+...+. .+.++.+|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~ 158 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLN 158 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCC
T ss_pred hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCc
Confidence 45778888999999888874 468888889999999888886432 7788888888888885553433 366777777
Q ss_pred EEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCC----------------------CCceeEEeeccCCCCC
Q 007628 92 YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGN----------------------SPVSVLVFANNDLGGC 149 (595)
Q Consensus 92 ~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~----------------------~~L~~L~L~~N~l~~~ 149 (595)
+|+|++|++.+... .....+|++|+|++|++.+... .... .+|++|+|++|++++.
T Consensus 159 ~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 159 YLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp EEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred EEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC
Confidence 77777777663322 2222566666666666553221 2222 3455555555555433
Q ss_pred cCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccC
Q 007628 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ 229 (595)
Q Consensus 150 ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~ 229 (595)
.. +..+ .+|++|++++|++.+. ..|..+.+|++|+|++|.|++. ..+..+.+|++|+|++|+|++.....|++
T Consensus 237 ~~--~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 237 SP--LANL-SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp GG--GTTC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred cc--hhcC-CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 22 3333 4555555555555532 3455555566666666655532 34555556666666666665555555556
Q ss_pred CCCCcEEEcccccCCCCC
Q 007628 230 LPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 230 l~~L~~L~Ls~N~Lsg~~ 247 (595)
+.+|++|+|++|.|++..
T Consensus 310 l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CTTCSEEECCSSSCCCCG
T ss_pred cccCCEEEccCCcccccc
Confidence 666666666666655543
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-26 Score=251.92 Aligned_cols=198 Identities=12% Similarity=0.104 Sum_probs=174.2
Q ss_pred CCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeec
Q 007628 39 LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFL 118 (595)
Q Consensus 39 L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L 118 (595)
+.+|+.|+|++|.|+++.+..|++|.+|++|+|++|+|++..+ |.++.+|++|||++|.|++.. ...+|++|+|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEEC
Confidence 3489999999999999989999999999999999999997765 899999999999999998432 2278999999
Q ss_pred cCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccC-CCccceEEeccCccccC
Q 007628 119 NDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG-MLKNLTVFDVSFNHLQG 197 (595)
Q Consensus 119 ~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~-~L~~L~~LdLs~N~L~g 197 (595)
++|++.+.....+ .+|++|+|++|.|++..+..|+.+ .+|++|+|++|.|++.++..|. .|.+|++|+|++|.|++
T Consensus 107 ~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 9999987665543 679999999999999989899888 8999999999999998888886 79999999999999996
Q ss_pred CCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 198 ~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
. ..+..+.+|++|+|++|+|++.. ..|..+.+|+.|||++|.|++...
T Consensus 184 ~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 184 V--KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp E--ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEECT
T ss_pred c--cccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcccch
Confidence 6 33456999999999999999755 458899999999999999997443
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.6e-24 Score=222.46 Aligned_cols=204 Identities=19% Similarity=0.234 Sum_probs=160.9
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
.++.+++.|++++++|+. ++..+. .+|++|+|++|+|+++....|.++.+|++|+|++|+|+++.. +..+.+|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred cccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 466788999999999886 444443 678999999999988888889999999999999999885432 377888999
Q ss_pred EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
|||++|+|+ .++..+. ...+|++|+|++|+|++.....|..+ .+|++|+|++|+|+
T Consensus 82 L~Ls~N~l~-~l~~~~~----------------------~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQ----------------------TLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELK 137 (290)
T ss_dssp EECCSSCCS-SCCCCTT----------------------TCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCCC
T ss_pred EECCCCcCC-cCchhhc----------------------cCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCCC
Confidence 999999887 4433221 12345666666666665555666666 77888888888888
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+.....|..+.+|++|+|++|+|++.....|..+.+|++|+|++|+|+ .++..+..+.+|+.|+|++|.|.+.
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 777777888999999999999999666667788999999999999998 6777888888999999999998765
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.3e-24 Score=234.05 Aligned_cols=212 Identities=19% Similarity=0.174 Sum_probs=172.4
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
.++.+|+.|||++|+|+++ + .|+++.+|++|+|++|+|+++ .|+++.+|++|+|++|+|++. .|.++.+|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCE
T ss_pred hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCE
Confidence 3477899999999999985 3 788999999999999999975 288999999999999999975 2888999999
Q ss_pred EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
|||++|+|++ ++ .....+|++|+|++|++++. +.....+|++|++++|++.+.+ .++.+ .+|++|+|++|+++
T Consensus 111 L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQ-TQLTTLDCSFNKIT 183 (457)
T ss_dssp EECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTC-TTCCEEECCSSCCC
T ss_pred EECCCCcCCe-ec-CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccC-CcCCEEECCCCccc
Confidence 9999999986 43 22237899999999998874 3344577899999998666655 46666 78899999999888
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
+. + ++.+.+|++|+|++|+|++. .|+.+.+|++|+|++|+|++ ++ ++.+.+|+.|+|++|+|++...
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 64 3 78888899999999998864 48888889999999999987 44 7888889999999998888653
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.6e-24 Score=236.44 Aligned_cols=219 Identities=22% Similarity=0.335 Sum_probs=165.9
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~ 91 (595)
+.++.+|+.|+|++|+++++ ..+.++.+|++|+|++|+|.+... ++.+.+|++|+|++|+|++. ..|.++.+|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 45667788888888887764 357778888888888888876544 77788888888888888754 4577788888
Q ss_pred EEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628 92 YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL 171 (595)
Q Consensus 92 ~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l 171 (595)
+|||++|+|++... .....+|++|+|++|++.+... .....+|++|+|++|++++... +..+ .+|++|+|++|++
T Consensus 247 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~L~~n~l 321 (466)
T 1o6v_A 247 DLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNL-KNLTYLTLYFNNI 321 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGC-TTCSEEECCSSCC
T ss_pred EEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCC-CCCCEEECcCCcC
Confidence 88888888875443 2223678888888888876443 4445678888888888876544 5555 7788888888888
Q ss_pred CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628 172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~ 247 (595)
.+..+ +..+.+|++|+|++|.+++. ..+..|.+|++|+|++|+|++..+ +.++.+|+.|+|++|.|++..
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred CCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 87654 67888888888888888854 567888888888888888887765 788888888888888888753
No 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.9e-24 Score=223.38 Aligned_cols=218 Identities=18% Similarity=0.283 Sum_probs=119.6
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
..+.+|++|+|++|+|+++.. |.++.+|++|+|++|+|+++ ..|.++.+|++|+|++|+|++... +.++.+|++
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~ 136 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYS 136 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCE
T ss_pred hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeE
Confidence 344555566666555554322 55555666666666655542 245556666666666665553322 555566666
Q ss_pred EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
|+|++|.+.+.+.......+|++|+|++|++.+... .....+|++|++++|++++... +..+ .+|++|++++|++.
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCC-CccceeecccCCCC
Confidence 666665444344332222566666666666553322 3334566677777776664332 3333 45555555555555
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+... +..+.+|++|+|++|.+++... +..+.+|++|+|++|+|++. ..+..+.+|++|+|++|.|++.
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~ 280 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI 280 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC
Confidence 3322 5556666666666666653322 56666666666666666643 4566666666666666666653
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=6.5e-25 Score=222.63 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=182.9
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
..++.|+.|++++|+|+.+ ..|.++.+|++|+|++|+|++. ..|.++.+|++|+|++|+|++.....|.++.+|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4567899999999999864 4688999999999999999974 58999999999999999999888888999999999
Q ss_pred EEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccc
Q 007628 93 LDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN 170 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~ 170 (595)
|+|++|+|++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|+|++.....|+.+ .+|++|+|++|+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL-TQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC-ccCCEEECCCCc
Confidence 999999999665554443 8999999999999977666654 4789999999999998877777777 899999999999
Q ss_pred cCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCC
Q 007628 171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232 (595)
Q Consensus 171 l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~ 232 (595)
+.+.....|+.+.+|++|+|++|.+.+. +.+|+.|++.+|+++|.++.+++.+..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 9998888899999999999999998743 567899999999999999999887664
No 65
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=2e-24 Score=216.23 Aligned_cols=180 Identities=20% Similarity=0.232 Sum_probs=122.1
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
.++.|++++++++. ++..+. .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 56789999999986 455544 589999999999999988899999999999999999998888889999999999999
Q ss_pred CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628 97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176 (595)
Q Consensus 97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip 176 (595)
+|+|++.....+.. ..+|++|+|++|+|+ +...
T Consensus 92 ~n~l~~~~~~~~~~----------------------l~~L~~L~L~~N~l~-------------------------~~~~ 124 (251)
T 3m19_A 92 NNQLASLPLGVFDH----------------------LTQLDKLYLGGNQLK-------------------------SLPS 124 (251)
T ss_dssp TSCCCCCCTTTTTT----------------------CTTCCEEECCSSCCC-------------------------CCCT
T ss_pred CCcccccChhHhcc----------------------cCCCCEEEcCCCcCC-------------------------CcCh
Confidence 99998433222111 122333333333333 2333
Q ss_pred CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
..|..+.+|++|+|++|+|++.....|+.+.+|++|+|++|+|++.....|.++.+|+.|+|++|.|++.
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 3344555566666666666544444555566666666666666555555555556666666666666554
No 66
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=6.2e-24 Score=231.76 Aligned_cols=221 Identities=21% Similarity=0.357 Sum_probs=117.0
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~ 91 (595)
+..+.+|++|||++|+|+++.. |.++.+|++|+|++|+|.++.. |++|.+|++|+|++|+|++... |.++.+|+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 137 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCC
Confidence 3456777888888887776533 7777777777777777775543 7777777777777777764422 55666666
Q ss_pred EEEccCCCCCCCCCcc--------------------c-cccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCc
Q 007628 92 YLDLRFNEFEGSVPSK--------------------L-FDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCI 150 (595)
Q Consensus 92 ~LdLs~N~l~g~ip~~--------------------l-~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~i 150 (595)
+|||++|+|++. ... + ...+|++|+|++|++.+. .......+|++|++++|++++..
T Consensus 138 ~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 138 RLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred EEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc
Confidence 666666655431 110 0 013455555555554422 11222233444444444443322
Q ss_pred C--------------------cccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCcc
Q 007628 151 P--------------------GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLE 210 (595)
Q Consensus 151 p--------------------~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~ 210 (595)
. ..+..+ .+|++|+|++|++.+... |..+.+|++|+|++|.+++... +..+.+|+
T Consensus 216 ~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 290 (466)
T 1o6v_A 216 PLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 290 (466)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred cccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccC
Confidence 2 223333 445555555555543322 4455555555555555553222 44555555
Q ss_pred EEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628 211 QLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 211 ~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~ 247 (595)
+|+|++|+|++... +..+.+|+.|+|++|+|++..
T Consensus 291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence 55555555554322 455555555555555555543
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=6e-24 Score=231.96 Aligned_cols=208 Identities=17% Similarity=0.191 Sum_probs=166.9
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
++..+.+|++|+|++|+|+++ .|+++.+|++|+|++|+|+++ .|+++.+|++|+|++|+|+++ + |.++.+|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCC-C--CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCee-c--CCCCCcC
Confidence 356778999999999999985 389999999999999999975 389999999999999999974 3 8899999
Q ss_pred CEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccc
Q 007628 91 KYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN 170 (595)
Q Consensus 91 ~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~ 170 (595)
++|+|++|+|++. . .....+|++|+|++|++.+.+ ......+|++|+|++|+|++. + ++.+ .+|++|++++|+
T Consensus 130 ~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l-~--l~~l-~~L~~L~l~~N~ 202 (457)
T 3bz5_A 130 TYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITEL-D--VSQN-KLLNRLNCDTNN 202 (457)
T ss_dssp CEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCC-C--CTTC-TTCCEEECCSSC
T ss_pred CEEECCCCcccee-c-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCcccee-c--cccC-CCCCEEECcCCc
Confidence 9999999999963 2 222378999999999766666 344557899999999999874 3 6666 789999999999
Q ss_pred cCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628 171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243 (595)
Q Consensus 171 l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L 243 (595)
+++. .|+.+.+|++|+|++|+|++ ++ ++.+.+|++|+|++|+|++.... .+.+|+.|++++|+|
T Consensus 203 l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~---~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 203 ITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDL 266 (457)
T ss_dssp CSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT---TCTTCCEEECTTCCC
T ss_pred CCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH---HCCCCCEEeccCCCC
Confidence 9875 48888999999999999986 44 88889999999999999876533 344444444444433
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=9.1e-25 Score=225.66 Aligned_cols=223 Identities=17% Similarity=0.158 Sum_probs=177.5
Q ss_pred ceeEEEccCCCCCCCCch---hhcCCCCCcEEEccCCcCCCCCchhh--cCCCCCCEEeccCCcCCCcCc----hhcCCC
Q 007628 17 VVASIDLNHADIAGYLPP---EIGRLTDLAIFHINSNRFCGVVPSTF--RRLKLLYEVDLSNNRFVGKFP----KLFLSL 87 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~---~~~~L~~L~~L~Ls~N~l~~~lp~~~--~~L~~L~~L~Ls~N~Lsg~lp----~~l~~L 87 (595)
.++.|+|+++++....-. .+..+.+|++|+|++|+|.+.++..| .++.+|++|+|++|+|++.+. ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 467888888877542111 12345679999999999999998888 899999999999999997544 455689
Q ss_pred CCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccC--CC-cc--cCCCCceeEEeeccCCCCCc--Ccc-ccccc
Q 007628 88 PKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFG--IP-EN--LGNSPVSVLVFANNDLGGCI--PGS-IGKMG 158 (595)
Q Consensus 88 ~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~--~p-~~--l~~~~L~~L~L~~N~l~~~i--p~~-l~~l~ 158 (595)
.+|++|+|++|+|.+.....+.. .+|++|+|++|++.+. +. .. ....+|++|+|++|+|+..- ... +..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l- 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG- 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT-
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC-
Confidence 99999999999998766655544 7899999999997642 11 12 23467999999999997321 112 3444
Q ss_pred chhhHHHhhccccCCCCCCccCCC---ccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcE
Q 007628 159 KTLNEIILMNDNLTGCLPPQIGML---KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235 (595)
Q Consensus 159 ~~L~~L~Ls~N~l~g~ip~~~~~L---~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~ 235 (595)
.+|++|+|++|+|.+.++..+..+ .+|++|+|++|+|+ .++..+. .+|++|+|++|+|++. ..+..+.+|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~--~~~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA--PQPDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC--CCTTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC--chhhhCCCccE
Confidence 789999999999999888888887 69999999999999 7777775 7999999999999974 23788899999
Q ss_pred EEcccccCCC
Q 007628 236 FTYSFNYFTG 245 (595)
Q Consensus 236 L~Ls~N~Lsg 245 (595)
|+|++|.|+.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999975
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=7.8e-24 Score=214.54 Aligned_cols=224 Identities=19% Similarity=0.218 Sum_probs=179.5
Q ss_pred EEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCC
Q 007628 20 SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE 99 (595)
Q Consensus 20 ~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~ 99 (595)
.++..+.++.. ++..+. .+|++|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|||++|+
T Consensus 11 ~~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 56666666665 444443 579999999999998888899999999999999999998777889999999999999999
Q ss_pred CCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC-CCCc
Q 007628 100 FEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC-LPPQ 178 (595)
Q Consensus 100 l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~-ip~~ 178 (595)
|++.....+ ....+|++|++++|++++.....++.+ .+|++|+|++|++.+. ++..
T Consensus 88 l~~~~~~~~----------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 88 IQSLALGAF----------------------SGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp CCEECTTTT----------------------TTCTTCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGG
T ss_pred cCccChhhh----------------------cCCccccEEECCCCCccccCchhcccC-CCCCEEECcCCccceecCchh
Confidence 873322111 123678889999999998777778888 8999999999999874 6889
Q ss_pred cCCCccceEEeccCccccCCCCCCcCCCCCcc----EEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc-
Q 007628 179 IGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLE----QLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA- 253 (595)
Q Consensus 179 ~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~----~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~- 253 (595)
|+++.+|++|+|++|+|++.....|..+.+|+ +|+|++|+|++.....+.. .+|+.|+|++|+|++........
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTC
T ss_pred hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccc
Confidence 99999999999999999987777787777777 8999999999766555544 48999999999999877655432
Q ss_pred cCCCCcccccCCCCCCC
Q 007628 254 AGGGGRMMAARPADCSK 270 (595)
Q Consensus 254 ~~~~~~~~~~~~~~c~~ 270 (595)
.......+.+|.+.|+.
T Consensus 224 ~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CSCCEEECCSSCBCCCT
T ss_pred ccccEEEccCCcccccC
Confidence 33444556777777754
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.7e-23 Score=214.79 Aligned_cols=179 Identities=21% Similarity=0.253 Sum_probs=144.7
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
..++.|+|++|+|+++....|.++.+|++|+|++|+|+++.. ++.+.+|++|+|++|+|+ .++..+.++.+|++|+|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 579999999999999888999999999999999999996533 388999999999999999 67788899999999999
Q ss_pred cCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC
Q 007628 96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC 174 (595)
Q Consensus 96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ 174 (595)
++|+|++.....+.. .+|++| +|++|+|++.....|..+ .+|++|+|++|+|++.
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L-----------------------~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQEL-----------------------YLKGNELKTLPPGLLTPT-PKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEE-----------------------ECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCSCC
T ss_pred CCCcCcccCHHHHcCCCCCCEE-----------------------ECCCCCCCccChhhcccc-cCCCEEECCCCcCCcc
Confidence 999998543333322 444444 455555554444444445 6778888888888766
Q ss_pred CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCC
Q 007628 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV 222 (595)
Q Consensus 175 ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~ 222 (595)
....|..+.+|++|+|++|+|+ .++..+..+.+|+.|+|++|.+...
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 6667788999999999999999 7888888889999999999998754
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=9.4e-24 Score=209.54 Aligned_cols=196 Identities=14% Similarity=0.161 Sum_probs=111.3
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-CCCcCchhcCCCCCCCEEEccC-CCCCCCCCccccc-cCCCeee
Q 007628 41 DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-FVGKFPKLFLSLPKLKYLDLRF-NEFEGSVPSKLFD-KDLDAIF 117 (595)
Q Consensus 41 ~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-Lsg~lp~~l~~L~~L~~LdLs~-N~l~g~ip~~l~~-~~L~~L~ 117 (595)
+|++|+|++|+|+++...+|+++.+|++|+|++|+ |+++....|.++.+|++|+|++ |+|++.....+.. .+|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 4433344455555555555554 5554222121111 3444444
Q ss_pred ccCCccccCCCcccCCCCce---eEEeecc-CCCCCcCcccccccchhh-HHHhhccccCCCCCCccCCCccceEEeccC
Q 007628 118 LNDNRFQFGIPENLGNSPVS---VLVFANN-DLGGCIPGSIGKMGKTLN-EIILMNDNLTGCLPPQIGMLKNLTVFDVSF 192 (595)
Q Consensus 118 L~~N~l~~~~p~~l~~~~L~---~L~L~~N-~l~~~ip~~l~~l~~~L~-~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~ 192 (595)
|++|++++ ++.+.....|+ +|+|++| ++++.....|..+ .+|+ +|+|++|++. .++..+....+|++|+|++
T Consensus 112 l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccch-hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 44444443 22222223344 7777777 6665555556655 6777 7777777776 4444333336788888888
Q ss_pred cc-ccCCCCCCcCCC-CCccEEEccCCcCCCCCchhccCCCCCcEEEccccc
Q 007628 193 NH-LQGSLPSSIGNM-KSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY 242 (595)
Q Consensus 193 N~-L~g~lP~~l~~L-~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~ 242 (595)
|. |++...+.|..+ .+|++|+|++|+|++. +.. .+.+|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 84 775556677777 7888888888888743 332 56677788777653
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=2.5e-24 Score=222.57 Aligned_cols=210 Identities=17% Similarity=0.246 Sum_probs=133.9
Q ss_pred EccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628 22 DLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE 101 (595)
Q Consensus 22 dLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~ 101 (595)
.+..+++++.+ .+.++.+|+.|+|++|+|..+ . .|..+.+|++|+|++|+|++... |.++.+|++|+|++|+|+
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 34444444321 233455556666666655532 2 45556666666666666553322 555666666666666655
Q ss_pred CCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCC
Q 007628 102 GSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181 (595)
Q Consensus 102 g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~ 181 (595)
+ +.......+|++|+|++|++++. .......+|++|+|++|++++... ++.+ .+|++|+|++|++.+... |..
T Consensus 99 ~-~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~--l~~ 171 (308)
T 1h6u_A 99 N-VSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSDLTP--LAN 171 (308)
T ss_dssp C-CGGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTT
T ss_pred C-chhhcCCCCCCEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEccCCcCCCChh--hcC
Confidence 3 22222225566666666655542 223334567777777777765433 5555 678888888888875432 788
Q ss_pred CccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 182 L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
+.+|++|+|++|.|++... +..+.+|++|+|++|+|++.. .+..+.+|+.|+|++|.|++...
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 8899999999999885432 788899999999999998665 48888999999999999887433
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=8.2e-26 Score=240.36 Aligned_cols=234 Identities=17% Similarity=0.183 Sum_probs=187.9
Q ss_pred CCCceeEEEccCCCCCCCCc----hhhcCCCCCcEEEccCCc---CCCCCchhh-------cCCCCCCEEeccCCcCCC-
Q 007628 14 SLRVVASIDLNHADIAGYLP----PEIGRLTDLAIFHINSNR---FCGVVPSTF-------RRLKLLYEVDLSNNRFVG- 78 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp----~~~~~L~~L~~L~Ls~N~---l~~~lp~~~-------~~L~~L~~L~Ls~N~Lsg- 78 (595)
.+.+|+.|+|++|+|.+... ..|.++.+|++|+|++|. |.+.++..+ .++.+|++|+|++|+|++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 45679999999999987633 447789999999999964 444555554 789999999999999997
Q ss_pred ---cCchhcCCCCCCCEEEccCCCCCCCCCccccc--------------cCCCeeeccCCccc-cCCC---ccc-CCCCc
Q 007628 79 ---KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--------------KDLDAIFLNDNRFQ-FGIP---ENL-GNSPV 136 (595)
Q Consensus 79 ---~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--------------~~L~~L~L~~N~l~-~~~p---~~l-~~~~L 136 (595)
.+...|.++.+|++|+|++|+|++.....+.. .+|++|+|++|++. +.+. ..+ ...+|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 46778899999999999999997433333322 58999999999987 3333 122 34689
Q ss_pred eeEEeeccCCCC-----CcCcccccccchhhHHHhhccccC----CCCCCccCCCccceEEeccCccccCC----CCCCc
Q 007628 137 SVLVFANNDLGG-----CIPGSIGKMGKTLNEIILMNDNLT----GCLPPQIGMLKNLTVFDVSFNHLQGS----LPSSI 203 (595)
Q Consensus 137 ~~L~L~~N~l~~-----~ip~~l~~l~~~L~~L~Ls~N~l~----g~ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l 203 (595)
++|+|++|+|+. .+...+..+ .+|++|+|++|.|+ +.+...|..+.+|++|+|++|.|++. +...|
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 999999999983 233366666 78999999999996 56777889999999999999999865 45566
Q ss_pred --CCCCCccEEEccCCcCCC----CCchhc-cCCCCCcEEEcccccCCCCCC
Q 007628 204 --GNMKSLEQLNVAHNRFTG----VIPSSV-CQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 204 --~~L~~L~~L~Ls~N~Lsg----~iP~~l-~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
+.+.+|++|+|++|+|++ .++..+ .++.+|+.|+|++|.|++...
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 448999999999999997 477776 668999999999999998763
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=4e-23 Score=225.23 Aligned_cols=83 Identities=33% Similarity=0.443 Sum_probs=34.4
Q ss_pred hhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC--CCchhccCC-------
Q 007628 160 TLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG--VIPSSVCQL------- 230 (595)
Q Consensus 160 ~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg--~iP~~l~~l------- 230 (595)
+|++|+|++|++.+ ++.. +.+|++|+|++|+|+ .++. .+.+|++|+|++|+|++ .++.+++++
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 45555555555553 3322 345666666666665 3444 34566666666666666 555555555
Q ss_pred ------CCCcEEEcccccCCC--CCCcc
Q 007628 231 ------PNLQNFTYSFNYFTG--EPPSC 250 (595)
Q Consensus 231 ------~~L~~L~Ls~N~Lsg--~~p~~ 250 (595)
.+|++|||++|+|++ .++..
T Consensus 390 ~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp ----------------------------
T ss_pred ccccccCcCCEEECCCCcCCccccchhh
Confidence 556666666666665 44443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.2e-22 Score=205.65 Aligned_cols=185 Identities=20% Similarity=0.284 Sum_probs=151.7
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 46999999999999988889999999999999999999877778899999999999999999877788999999999999
Q ss_pred cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628 96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL 175 (595)
Q Consensus 96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i 175 (595)
++|+|++.....+.. ..+|++|+|++|+|++.....|..+ .+|++|+|++|++.+..
T Consensus 117 ~~n~l~~~~~~~~~~----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDS----------------------LTKLTYLSLGYNELQSLPKGVFDKL-TSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CSSCCCCCCTTTTTT----------------------CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCC
T ss_pred CCCccCeeCHHHhCc----------------------CcCCCEEECCCCcCCccCHhHccCC-cccceeEecCCcCcEeC
Confidence 999998544332211 2344555555555554444445555 67888888888888777
Q ss_pred CCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628 176 PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 176 p~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
...|..+.+|++|+|++|.|++.....|..+.+|++|+|++|.+....
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 777889999999999999999776777899999999999999987653
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=3.3e-23 Score=232.09 Aligned_cols=229 Identities=17% Similarity=0.195 Sum_probs=186.7
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCC--CCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCG--VVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~--~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
+..|+.+++.+|.+.+. ..+..+.+|++|++++|.+.. .....+..+.+|++|++.+|.+.+ +...|..+.+|+.
T Consensus 348 l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~ 424 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEH 424 (635)
T ss_dssp CTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCE
T ss_pred chhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccc
Confidence 34455555555544432 233457788888888888753 456667788888888888888773 4556788999999
Q ss_pred EEccCCCCCCCCCccccc--cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCC-CCcCcccccccchhhHHHhhc
Q 007628 93 LDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLG-GCIPGSIGKMGKTLNEIILMN 168 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~-~~ip~~l~~l~~~L~~L~Ls~ 168 (595)
+++++|++.+.+....+. .+|+.++++.|++.+.....+.. ..+++|+|++|.+. +.+++.|..+ .+|++|+|++
T Consensus 425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~ 503 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQ 503 (635)
T ss_dssp EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTT
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc-cccCEEECCC
Confidence 999988877666655554 78999999999998877766654 67999999999754 4567777777 8999999999
Q ss_pred cccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCC-CCCcEEEcccccCCCCC
Q 007628 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL-PNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 169 N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l-~~L~~L~Ls~N~Lsg~~ 247 (595)
|+|++..+.+|++|.+|++|+|++|+|++..+..|..|.+|++|||++|+|++..+++|..+ .+|++|+|++|.|+++.
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999999999999999998888899999999999999999999999999988 68999999999998753
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.4e-22 Score=202.83 Aligned_cols=180 Identities=18% Similarity=0.229 Sum_probs=139.9
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeecc
Q 007628 40 TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLN 119 (595)
Q Consensus 40 ~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~ 119 (595)
.++++|+++++.|+ .++..+. .+|++|+|++|+|++.....|.++.+|++|+|++|+|++.....+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------- 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF----------- 79 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-----------
Confidence 45778999999998 4555554 689999999999998888889999999999999998874332211
Q ss_pred CCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCC
Q 007628 120 DNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSL 199 (595)
Q Consensus 120 ~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~l 199 (595)
..+ .+|++|+|++|+|++.....|..+.+|++|+|++|+|++..
T Consensus 80 -----------------------------------~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 80 -----------------------------------DDL-TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp -----------------------------------TTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -----------------------------------ccC-CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC
Confidence 222 34555555555555555567788999999999999999777
Q ss_pred CCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccccc-CCCCcccccCCCCCC
Q 007628 200 PSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAA-GGGGRMMAARPADCS 269 (595)
Q Consensus 200 P~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~-~~~~~~~~~~~~~c~ 269 (595)
...|..+.+|++|+|++|+|++.....|.++.+|++|+|++|+|++.....+... ......+.+|.+.|.
T Consensus 124 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7778999999999999999998777789999999999999999998877544332 344445666777665
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.6e-24 Score=228.76 Aligned_cols=231 Identities=13% Similarity=0.165 Sum_probs=172.2
Q ss_pred CceeEEEccCCCCCCCCc----hhhcCCC-CCcEEEccCCcCCCCCchhhcCC-----CCCCEEeccCCcCCCcCchh--
Q 007628 16 RVVASIDLNHADIAGYLP----PEIGRLT-DLAIFHINSNRFCGVVPSTFRRL-----KLLYEVDLSNNRFVGKFPKL-- 83 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp----~~~~~L~-~L~~L~Ls~N~l~~~lp~~~~~L-----~~L~~L~Ls~N~Lsg~lp~~-- 83 (595)
++|+.|||++|+|++... +.|.++. +|++|+|++|+|++.....|..+ .+|++|+|++|+|++.....
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 458999999999888766 6777888 89999999999988777777665 88999999999988666553
Q ss_pred --cCCC-CCCCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCccc----C-C-CCceeEEeeccCCCC
Q 007628 84 --FLSL-PKLKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENL----G-N-SPVSVLVFANNDLGG 148 (595)
Q Consensus 84 --l~~L-~~L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l----~-~-~~L~~L~L~~N~l~~ 148 (595)
|..+ .+|++|||++|+|++.....+.. .+|++|+|++|++.+.....+ . . .+|++|+|++|+|++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 4444 78999999999987555443322 489999999998885443332 2 2 379999999999887
Q ss_pred CcCcccccc----cchhhHHHhhccccCCC----CCCccCC-CccceEEeccCccccCCCC----CCcCCCCCccEEEcc
Q 007628 149 CIPGSIGKM----GKTLNEIILMNDNLTGC----LPPQIGM-LKNLTVFDVSFNHLQGSLP----SSIGNMKSLEQLNVA 215 (595)
Q Consensus 149 ~ip~~l~~l----~~~L~~L~Ls~N~l~g~----ip~~~~~-L~~L~~LdLs~N~L~g~lP----~~l~~L~~L~~L~Ls 215 (595)
.....|+++ ..+|++|+|++|+|.+. +...|.. ..+|++|||++|.|++... ..+..+.+|++|+|+
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 766555432 14788999999988853 3334444 3589999999999876433 345777889999999
Q ss_pred CCcCCCC-------CchhccCCCCCcEEEcccccCCCC
Q 007628 216 HNRFTGV-------IPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 216 ~N~Lsg~-------iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+|.|.+. +...+.++.+|+.|||++|.|.+.
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9985543 233567788899999999998765
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.2e-24 Score=227.77 Aligned_cols=229 Identities=16% Similarity=0.152 Sum_probs=184.4
Q ss_pred EEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc----hhhcCCC-CCCEEeccCCcCCCcCchhcCCC-----CC
Q 007628 20 SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP----STFRRLK-LLYEVDLSNNRFVGKFPKLFLSL-----PK 89 (595)
Q Consensus 20 ~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp----~~~~~L~-~L~~L~Ls~N~Lsg~lp~~l~~L-----~~ 89 (595)
.++|++|++++.+++.+....+|++|||++|+|++... +.|.++. +|++|+|++|+|++.....|..+ .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 57899999999988888888889999999999998777 7888998 99999999999998767666664 99
Q ss_pred CCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCcccC------CCCceeEEeeccCCCCCcCccc---
Q 007628 90 LKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENLG------NSPVSVLVFANNDLGGCIPGSI--- 154 (595)
Q Consensus 90 L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l~------~~~L~~L~L~~N~l~~~ip~~l--- 154 (595)
|++|||++|+|++.....+.. .+|++|+|++|++++.....+. ...|++|+|++|+|++.....+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998766554433 5899999999999876554432 2589999999999996554444
Q ss_pred -ccccchhhHHHhhccccCCCCCCccCC----C-ccceEEeccCccccCC----CCCCcCC-CCCccEEEccCCcCCCCC
Q 007628 155 -GKMGKTLNEIILMNDNLTGCLPPQIGM----L-KNLTVFDVSFNHLQGS----LPSSIGN-MKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 155 -~~l~~~L~~L~Ls~N~l~g~ip~~~~~----L-~~L~~LdLs~N~L~g~----lP~~l~~-L~~L~~L~Ls~N~Lsg~i 223 (595)
..+..+|++|+|++|+|++....+|.. + .+|++|||++|.|++. +...+.. ..+|++|+|++|+|++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 444348999999999998776654443 4 6999999999999863 3445555 459999999999998754
Q ss_pred c----hhccCCCCCcEEEcccccCCCCCC
Q 007628 224 P----SSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 224 P----~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
. ..+..+.+|++|+|++|.|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCH
Confidence 3 445778999999999999765543
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=5.2e-23 Score=212.44 Aligned_cols=202 Identities=15% Similarity=0.133 Sum_probs=161.6
Q ss_pred CCCcEEEccCCcCCCCCch---hhcCCCCCCEEeccCCcCCCcCchhc--CCCCCCCEEEccCCCCCCCCCccc-----c
Q 007628 40 TDLAIFHINSNRFCGVVPS---TFRRLKLLYEVDLSNNRFVGKFPKLF--LSLPKLKYLDLRFNEFEGSVPSKL-----F 109 (595)
Q Consensus 40 ~~L~~L~Ls~N~l~~~lp~---~~~~L~~L~~L~Ls~N~Lsg~lp~~l--~~L~~L~~LdLs~N~l~g~ip~~l-----~ 109 (595)
..++.|+|+++++....-. .+..+.+|++|+|++|+|.+.++..+ .++.+|++|||++|+|++.+.... .
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3478889998887642111 12345779999999999999998888 899999999999999997655221 1
Q ss_pred ccCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCC--cC--cccccccchhhHHHhhccccCCCCCC----ccC
Q 007628 110 DKDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGC--IP--GSIGKMGKTLNEIILMNDNLTGCLPP----QIG 180 (595)
Q Consensus 110 ~~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~--ip--~~l~~l~~~L~~L~Ls~N~l~g~ip~----~~~ 180 (595)
..+|++|+|++|++.+.....+. ..+|++|+|++|++.+. +. ..+..+ .+|++|+|++|+++. +.. .++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF-PAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC-CCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 37999999999999887776664 47899999999998753 21 223455 789999999999963 222 256
Q ss_pred CCccceEEeccCccccCCCCCCcCCC---CCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 181 MLKNLTVFDVSFNHLQGSLPSSIGNM---KSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 181 ~L~~L~~LdLs~N~L~g~lP~~l~~L---~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
.+.+|++|||++|+|++.++..+..+ .+|++|+|++|+|+ .++..+. .+|++|||++|+|++.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence 78999999999999998888888777 69999999999999 5666664 7999999999999985
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.7e-22 Score=208.88 Aligned_cols=193 Identities=17% Similarity=0.280 Sum_probs=165.5
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.+.+|+.|+|++|+|+.+ ..|.++.+|++|+|++|+|.++.. |.++.+|++|+|++|+|++. ..|.++.+|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 467899999999999875 368999999999999999997544 99999999999999999964 369999999999
Q ss_pred EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628 94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g 173 (595)
+|++|+|++ +.......+|++|+|++|++++... .....+|++|+|++|++++... +..+ .+|++|+|++|++.+
T Consensus 113 ~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQITD-VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANL-SKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCC
T ss_pred ECCCCCCCC-chhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCC-CCCCEEECCCCccCc
Confidence 999999985 4443333899999999999986543 4455789999999999987544 7777 889999999999986
Q ss_pred CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG 221 (595)
Q Consensus 174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg 221 (595)
... |..+.+|++|+|++|.|++.. .+..+.+|++|+|++|.|++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 543 889999999999999999655 48999999999999999986
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=2.9e-23 Score=226.33 Aligned_cols=213 Identities=21% Similarity=0.229 Sum_probs=102.5
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCC-------------CEEeccCCcCCCcC
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLL-------------YEVDLSNNRFVGKF 80 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L-------------~~L~Ls~N~Lsg~l 80 (595)
+.+.|+.|+|++|+| +.++.+|++|++|++|+|++|++.|.++.+|+++.+| ++|+|++|+|++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 346777788888877 5677778888888888888777777777777666543 556666665553 1
Q ss_pred chhc-----------------CCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeec
Q 007628 81 PKLF-----------------LSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFAN 143 (595)
Q Consensus 81 p~~l-----------------~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~ 143 (595)
+... ..+.+|++|||++|+|++ ++.. ..+|++|+|++|++++ ++++....+|++|++++
T Consensus 87 p~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 87 PELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN 162 (454)
T ss_dssp CSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred CCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence 2110 012344444444444442 1111 1356666666666654 44333335566666666
Q ss_pred cCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628 144 NDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 144 N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
|++++ ++..+ .+|++|+|++|++.+ ++ +|++|.+|++|+|++|+|++ ++..+ .+|++|+|++|+|+ .+
T Consensus 163 N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 163 NSLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-EL 230 (454)
T ss_dssp SCCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SC
T ss_pred CcCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cc
Confidence 66654 33322 355666666666664 33 46666666666666666653 33221 35555555555555 34
Q ss_pred chhccCCCCCcEEEcccccCCC
Q 007628 224 PSSVCQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 224 P~~l~~l~~L~~L~Ls~N~Lsg 245 (595)
+ .|+++.+|++|++++|+|++
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSS
T ss_pred c-ccCCCCCCCEEECCCCcCCc
Confidence 4 35566666666666666655
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.3e-24 Score=221.88 Aligned_cols=219 Identities=17% Similarity=0.159 Sum_probs=102.5
Q ss_pred eeEEEccCCCCCCCCchhhcCC--CCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc-CchhcCCCCCCCEEE
Q 007628 18 VASIDLNHADIAGYLPPEIGRL--TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK-FPKLFLSLPKLKYLD 94 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L--~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~-lp~~l~~L~~L~~Ld 94 (595)
++.|||+++++. ...+.++ .+|+.|+|++|.|.+.... +.++.+|++|+|++|+|++. +...+.++.+|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555555544 2334444 4555555555555544333 33455555555555555433 444455555555555
Q ss_pred ccCCCCCCCCCccccc-cCCCeeeccCC-ccccC-CCccc-CCCCceeEEeecc-CCCCC-cCcccccccc-hhhHHHhh
Q 007628 95 LRFNEFEGSVPSKLFD-KDLDAIFLNDN-RFQFG-IPENL-GNSPVSVLVFANN-DLGGC-IPGSIGKMGK-TLNEIILM 167 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N-~l~~~-~p~~l-~~~~L~~L~L~~N-~l~~~-ip~~l~~l~~-~L~~L~Ls 167 (595)
|++|++++.+...+.. .+|++|+|++| .+++. +...+ ...+|++|+|++| ++++. +...+..+ . +|++|+|+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV-SETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS-CTTCCEEECC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc-ccCCCEEEeC
Confidence 5555554333333322 45555555555 33321 22211 1234555555555 44432 23333333 3 55555555
Q ss_pred cc--ccC-CCCCCccCCCccceEEeccCcc-ccCCCCCCcCCCCCccEEEccCCc-CCCCCchhccCCCCCcEEEcccc
Q 007628 168 ND--NLT-GCLPPQIGMLKNLTVFDVSFNH-LQGSLPSSIGNMKSLEQLNVAHNR-FTGVIPSSVCQLPNLQNFTYSFN 241 (595)
Q Consensus 168 ~N--~l~-g~ip~~~~~L~~L~~LdLs~N~-L~g~lP~~l~~L~~L~~L~Ls~N~-Lsg~iP~~l~~l~~L~~L~Ls~N 241 (595)
+| .++ +.+...+..+.+|++|+|++|. +++.....|.++.+|++|+|++|. ++...-..|.++.+|+.|+|++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 55 222 2233344445555555555555 444444455555555555555552 22111123445555555555555
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.4e-22 Score=193.99 Aligned_cols=178 Identities=16% Similarity=0.233 Sum_probs=133.1
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~ 97 (595)
.+.+++++++++.+ +.. ...+|++|+|++|+|+++....|+++.+|++|+|++|+|+++....|.++.+|++|||++
T Consensus 9 ~~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 56888888888764 333 356899999999999988777889999999999999999977777788999999999999
Q ss_pred CCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCC
Q 007628 98 NEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPP 177 (595)
Q Consensus 98 N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~ 177 (595)
|+|++.....+ ..+ .+|++|+|++|+|.+....
T Consensus 86 n~l~~~~~~~~----------------------------------------------~~l-~~L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 86 NQLQSLPNGVF----------------------------------------------DKL-TQLKELALNTNQLQSLPDG 118 (208)
T ss_dssp SCCCCCCTTTT----------------------------------------------TTC-TTCCEEECCSSCCCCCCTT
T ss_pred CcCCccCHhHh----------------------------------------------cCc-cCCCEEEcCCCcCcccCHh
Confidence 98873222111 111 3344444444444444445
Q ss_pred ccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccc
Q 007628 178 QIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA 252 (595)
Q Consensus 178 ~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~ 252 (595)
.|..+.+|++|+|++|+|++.....|..+.+|++|+|++|.+.+ .+.+|++|++++|+|+|.++...+
T Consensus 119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 56778888888888888886666668888888888888887764 345788888888888888876544
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=5.4e-22 Score=208.57 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=167.1
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCE-EeccCCcCCCcCchhcCCCCCCCEE
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYE-VDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~-L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
++++.|+|++|+|+.+-.++|.+|.+|++|+|++|+|.+.++ .+|.+|.+|++ +++++|+|+++.++.|.+|.+|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 579999999999998777789999999999999999876554 56889988875 6677899998888999999999999
Q ss_pred EccCCCCCCCCCccccc-cCCCeeeccCC-ccccCCCcccCC--CCceeEEeeccCCCCCcCcccccccchhhHHHhhcc
Q 007628 94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDN-RFQFGIPENLGN--SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMND 169 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N-~l~~~~p~~l~~--~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N 169 (595)
+|++|+|++........ .++..|++.++ ++.......+.. ..+++|+|++|+|+. +...++.+ .+|++|++.+|
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~-~~L~~l~l~~~ 187 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNG-TQLDELNLSDN 187 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTT-EEEEEEECTTC
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccc-cchhHHhhccC
Confidence 99999998544333322 56777888664 444333333333 358899999999985 55555555 57899999864
Q ss_pred ccCCCCC-CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628 170 NLTGCLP-PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243 (595)
Q Consensus 170 ~l~g~ip-~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L 243 (595)
+..+.++ +.|..|.+|++|||++|+|+ .++.. .+.+|+.|++.++.-...++ .+.++.+|+.+++.++..
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 4444555 56899999999999999999 45442 34566666655544333565 488899999999987653
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.2e-22 Score=198.45 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=151.8
Q ss_pred CCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCC-CCCCCCccccc--cCCCeeeccC-CccccCCCcccC-CCCcee
Q 007628 64 KLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE-FEGSVPSKLFD--KDLDAIFLND-NRFQFGIPENLG-NSPVSV 138 (595)
Q Consensus 64 ~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~-l~g~ip~~l~~--~~L~~L~L~~-N~l~~~~p~~l~-~~~L~~ 138 (595)
.+|++|+|++|+|+++....|.++.+|++|||++|+ |+ .+....+. .+|++|+|++ |++++.....+. ..+|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 489999999999998777799999999999999997 77 45543333 7999999998 999866655554 468999
Q ss_pred EEeeccCCCCCcCcccccccchhh---HHHhhcc-ccCCCCCCccCCCccce-EEeccCccccCCCCCCcCCCCCccEEE
Q 007628 139 LVFANNDLGGCIPGSIGKMGKTLN---EIILMND-NLTGCLPPQIGMLKNLT-VFDVSFNHLQGSLPSSIGNMKSLEQLN 213 (595)
Q Consensus 139 L~L~~N~l~~~ip~~l~~l~~~L~---~L~Ls~N-~l~g~ip~~~~~L~~L~-~LdLs~N~L~g~lP~~l~~L~~L~~L~ 213 (595)
|+|++|+|++ ++. |..+ .+|+ +|+|++| ++.+.....|.++.+|+ +|+|++|+|+ .++..+....+|++|+
T Consensus 110 L~l~~n~l~~-lp~-~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEECCCS-CCC-CTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEE
T ss_pred EeCCCCCCcc-ccc-cccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEE
Confidence 9999999987 555 6666 6777 9999999 99877777899999999 9999999999 5555544448999999
Q ss_pred ccCCc-CCCCCchhccCC-CCCcEEEcccccCCCCCCc
Q 007628 214 VAHNR-FTGVIPSSVCQL-PNLQNFTYSFNYFTGEPPS 249 (595)
Q Consensus 214 Ls~N~-Lsg~iP~~l~~l-~~L~~L~Ls~N~Lsg~~p~ 249 (595)
|++|+ |++.....|.++ .+|+.|||++|+|++....
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 99995 987767889999 9999999999999976443
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=3.6e-22 Score=223.18 Aligned_cols=188 Identities=22% Similarity=0.378 Sum_probs=141.9
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
+|+.|+|++|+|++ ++..+ +.+|++|+|++|+|+. ++ ..+.+|++|+|++|+|++ ++. |.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 68888999888887 55545 3678899999998884 45 557888899999998886 555 554 88899999
Q ss_pred CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628 97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176 (595)
Q Consensus 97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip 176 (595)
+|+|++ ++. ...+|+.|+|++|++++ ++. ...+|++|+|++|.|++ ++. |. .+|++|+|++|+|+ .++
T Consensus 129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP---ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC---TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh---CCCCEEECcCCCCC-chh
Confidence 998886 655 45788888888888876 444 34678888888888876 555 44 67888888888887 555
Q ss_pred CccCCCccc-------eEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC
Q 007628 177 PQIGMLKNL-------TVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP 231 (595)
Q Consensus 177 ~~~~~L~~L-------~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~ 231 (595)
. |.. +| ++|+|++|+|+ .++..+..|.+|++|+|++|.|++.++..|..+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5 554 66 88888888888 5777777788888888888888887777766543
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2e-23 Score=216.90 Aligned_cols=233 Identities=13% Similarity=0.066 Sum_probs=185.2
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCC-CchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV-VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~-lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
..++.|+|++|.|.+.... +.++.+|++|+|++|+|++. +...+.++.+|++|+|++|++++.+...|.++.+|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6799999999999987655 66899999999999999876 788899999999999999999988888999999999999
Q ss_pred ccCC-CCCCC-CCccccc-cCCCeeeccCC-ccccC-CCcccC-CC-CceeEEeecc--CCC-CCcCcccccccchhhHH
Q 007628 95 LRFN-EFEGS-VPSKLFD-KDLDAIFLNDN-RFQFG-IPENLG-NS-PVSVLVFANN--DLG-GCIPGSIGKMGKTLNEI 164 (595)
Q Consensus 95 Ls~N-~l~g~-ip~~l~~-~~L~~L~L~~N-~l~~~-~p~~l~-~~-~L~~L~L~~N--~l~-~~ip~~l~~l~~~L~~L 164 (595)
|++| .|++. +...+.. .+|++|+|++| ++++. +...+. .. +|++|+|++| .++ +.+...+..+ .+|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-PNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-TTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC-CCCCEE
Confidence 9999 67743 3333332 78999999999 88753 333333 35 8999999999 555 4455566666 799999
Q ss_pred Hhhccc-cCCCCCCccCCCccceEEeccCcc-ccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccccc
Q 007628 165 ILMNDN-LTGCLPPQIGMLKNLTVFDVSFNH-LQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY 242 (595)
Q Consensus 165 ~Ls~N~-l~g~ip~~~~~L~~L~~LdLs~N~-L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~ 242 (595)
+|++|. +++.....|.++.+|++|+|++|. +....-..|+++.+|++|+|++| ++...-..+. .+|+.|+|++|+
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 999999 776777789999999999999995 43333346888999999999999 6543323332 246777799999
Q ss_pred CCCCCCccccc
Q 007628 243 FTGEPPSCTAA 253 (595)
Q Consensus 243 Lsg~~p~~~~~ 253 (595)
|++..+...+.
T Consensus 305 l~~~~~~~~~~ 315 (336)
T 2ast_B 305 FTTIARPTIGN 315 (336)
T ss_dssp SCCTTCSSCSS
T ss_pred CccccCCcccc
Confidence 99987765443
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=6.3e-21 Score=215.38 Aligned_cols=209 Identities=22% Similarity=0.273 Sum_probs=117.2
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+|+.|+|++|+|+.+ +. .+.+|++|+|++|+|++ ++. .+.+|++|+|++|+|+++ +. .+.+|++|+|
T Consensus 61 ~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence 4567777777776643 22 45667777777777664 332 556666666666666532 22 2344444444
Q ss_pred cCCCCCCCCCccccccCCCeeeccCCccccCCCcc------------------cCCCCceeEEeeccCCCCCcCcccc--
Q 007628 96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPEN------------------LGNSPVSVLVFANNDLGGCIPGSIG-- 155 (595)
Q Consensus 96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~------------------l~~~~L~~L~L~~N~l~~~ip~~l~-- 155 (595)
++|+|++ ++..+ .+|++|+|++|++++. +.. ....+|++|+|++|.|++ ++..+.
T Consensus 129 ~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L 203 (622)
T 3g06_A 129 FGNQLTS-LPVLP--PGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSEL 203 (622)
T ss_dssp CSSCCSC-CCCCC--TTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred CCCCCCc-CCCCC--CCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchh
Confidence 4444442 22221 3444444444444321 110 011345555555555553 111111
Q ss_pred --------------cccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628 156 --------------KMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG 221 (595)
Q Consensus 156 --------------~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg 221 (595)
....+|++|+|++|+|++ ++ ..+.+|++|+|++|+|+ .++. .+.+|++|+|++|+|+
T Consensus 204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-
T ss_pred hEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-
Confidence 111346666666666664 33 34566777777777776 4444 4567888888888887
Q ss_pred CCchhccCCCCCcEEEcccccCCCCCCcc
Q 007628 222 VIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250 (595)
Q Consensus 222 ~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~ 250 (595)
.++..|.++.+|+.|+|++|.|++.+...
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 66777888888888888888887765543
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=3.4e-22 Score=205.04 Aligned_cols=193 Identities=17% Similarity=0.234 Sum_probs=125.5
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
+.++..++|.++.+++++ .+.++.+|+.|+|++|+|.++ ..|..|.+|++|+|++|+|++... |.++.+|++|+
T Consensus 23 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~ 96 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96 (291)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence 344455566666666542 345678888888888888754 357888888888888888886544 88888888888
Q ss_pred ccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC
Q 007628 95 LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC 174 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ 174 (595)
|++|+|++ +.......+|++|+|++|++++ . ..+..+ .+|++|+|++|++.+.
T Consensus 97 l~~n~l~~-~~~l~~l~~L~~L~L~~n~i~~-----------------------~--~~l~~l-~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 97 LDENKVKD-LSSLKDLKKLKSLSLEHNGISD-----------------------I--NGLVHL-PQLESLYLGNNKITDI 149 (291)
T ss_dssp CCSSCCCC-GGGGTTCTTCCEEECTTSCCCC-----------------------C--GGGGGC-TTCCEEECCSSCCCCC
T ss_pred CCCCcCCC-ChhhccCCCCCEEECCCCcCCC-----------------------C--hhhcCC-CCCCEEEccCCcCCcc
Confidence 88888874 3322222455555555555442 1 233333 4555555555555543
Q ss_pred CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 175 ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
..|+.+.+|++|+|++|.|++... +..+.+|++|+|++|+|++. ..+..+.+|+.|+|++|.++..
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCC
Confidence 456667777777777777765433 66777777777777777643 3466777777777777776653
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.9e-23 Score=222.11 Aligned_cols=226 Identities=15% Similarity=0.215 Sum_probs=175.8
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCC----chhhcCCCCCCEEeccCCc---CCCcCchhc------
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVV----PSTFRRLKLLYEVDLSNNR---FVGKFPKLF------ 84 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~l----p~~~~~L~~L~~L~Ls~N~---Lsg~lp~~l------ 84 (595)
|+..+|+..++.. +...+..+.+|+.|+|++|+|.+.. ...|.++.+|++|+|++|. |.+.++..+
T Consensus 11 L~~~~l~~~~~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 11 LKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CEESSCCSHHHHT-TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred cccCCCCHHHHHH-HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 4444444444443 5567888999999999999998763 3447799999999999964 444555444
Q ss_pred -CCCCCCCEEEccCCCCCCC----CCccccc-cCCCeeeccCCccccCCCcccCC--------------CCceeEEeecc
Q 007628 85 -LSLPKLKYLDLRFNEFEGS----VPSKLFD-KDLDAIFLNDNRFQFGIPENLGN--------------SPVSVLVFANN 144 (595)
Q Consensus 85 -~~L~~L~~LdLs~N~l~g~----ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~--------------~~L~~L~L~~N 144 (595)
.++.+|++|||++|+|++. +...+.. .+|++|+|++|++.......+.. .+|++|+|++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 7899999999999999863 3334333 78999999999987443333322 68999999999
Q ss_pred CCCC-CcC---cccccccchhhHHHhhccccC--C---CCCCccCCCccceEEeccCcccc----CCCCCCcCCCCCccE
Q 007628 145 DLGG-CIP---GSIGKMGKTLNEIILMNDNLT--G---CLPPQIGMLKNLTVFDVSFNHLQ----GSLPSSIGNMKSLEQ 211 (595)
Q Consensus 145 ~l~~-~ip---~~l~~l~~~L~~L~Ls~N~l~--g---~ip~~~~~L~~L~~LdLs~N~L~----g~lP~~l~~L~~L~~ 211 (595)
+|+. .+. ..|..+ .+|++|+|++|+|. | .+...|..+.+|++|+|++|.|+ +.+...|..+.+|++
T Consensus 170 ~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp CCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCcHHHHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 9983 333 345555 68999999999987 2 33447889999999999999996 567788899999999
Q ss_pred EEccCCcCCCC----Cchhc--cCCCCCcEEEcccccCCC
Q 007628 212 LNVAHNRFTGV----IPSSV--CQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 212 L~Ls~N~Lsg~----iP~~l--~~l~~L~~L~Ls~N~Lsg 245 (595)
|+|++|+|++. +...+ +.+.+|+.|+|++|.|++
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 99999999875 55666 448999999999999998
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.4e-20 Score=182.65 Aligned_cols=175 Identities=15% Similarity=0.163 Sum_probs=134.4
Q ss_pred ceecccCCCC---CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCC
Q 007628 2 GVFCARSPFN---SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVG 78 (595)
Q Consensus 2 gv~C~~~~~~---~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg 78 (595)
||.|...... ..-..+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+|++
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 6777654321 1224579999999999999888889999999999999999998888889999999999999999998
Q ss_pred cCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCccccc
Q 007628 79 KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGK 156 (595)
Q Consensus 79 ~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~ 156 (595)
+....|.++.+|++|||++|+|++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|.+.+.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------- 163 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------- 163 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------
Confidence 77778899999999999999999554443332 6788888888888765554443 35677777777766532
Q ss_pred ccchhhHHHhhccccCCCCCCccCCCcc
Q 007628 157 MGKTLNEIILMNDNLTGCLPPQIGMLKN 184 (595)
Q Consensus 157 l~~~L~~L~Ls~N~l~g~ip~~~~~L~~ 184 (595)
+ ..|+.|++..|+++|.++++++.+..
T Consensus 164 ~-~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 C-PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp T-TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred C-CCHHHHHHHHHhCCceeeccCccccC
Confidence 2 45667777777777777666665543
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=6.1e-22 Score=223.18 Aligned_cols=195 Identities=17% Similarity=0.240 Sum_probs=124.2
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
..+.++..++|.++.+.+++ .+.+|.+|+.|+|++|+|..+ ..|.+|.+|+.|+|++|+|+++.. |.+|.+|++
T Consensus 18 ~~l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 34556667777777777653 356788889999999998854 368889999999999999886554 888899999
Q ss_pred EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
|+|++|+|.+ +.......+|+.|+|++|++.+ +. .|..+ .+|+.|+|++|+|.
T Consensus 92 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~-l~------------------------~l~~l-~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 92 LFLDENKIKD-LSSLKDLKKLKSLSLEHNGISD-IN------------------------GLVHL-PQLESLYLGNNKIT 144 (605)
T ss_dssp EECCSSCCCC-CTTSTTCTTCCEEECTTSCCCC-CG------------------------GGGGC-TTCSEEECCSSCCC
T ss_pred EECcCCCCCC-ChhhccCCCCCEEEecCCCCCC-Cc------------------------cccCC-CccCEEECCCCccC
Confidence 9999998874 3322222556666666665553 22 23333 44555555555544
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+. ..|+.|.+|++|+|++|.|++..+ |..|.+|++|+|++|+|++. ..|..|.+|+.|+|++|.|++.
T Consensus 145 ~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 145 DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 33 445555566666666666654433 55566666666666666543 3455566666666666665554
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.8e-21 Score=217.52 Aligned_cols=186 Identities=22% Similarity=0.339 Sum_probs=156.6
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccC
Q 007628 41 DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLND 120 (595)
Q Consensus 41 ~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~ 120 (595)
+|+.|+|++|+|++ ++..+ +.+|++|+|++|+|+ .++ ..+.+|++|||++|+|++ ++. +. .+|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence 89999999999997 66655 488999999999999 555 457899999999999996 777 43 4999999999
Q ss_pred CccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCC
Q 007628 121 NRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLP 200 (595)
Q Consensus 121 N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP 200 (595)
|++++ ++. ...+|++|+|++|.|++ ++. ...+|++|+|++|+|++ ++. |. .+|++|+|++|+|+ .++
T Consensus 130 N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE--LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC--CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC--cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 99987 555 56789999999999997 554 23789999999999997 666 66 89999999999999 677
Q ss_pred CCcCCCCCc-------cEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc
Q 007628 201 SSIGNMKSL-------EQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA 253 (595)
Q Consensus 201 ~~l~~L~~L-------~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~ 253 (595)
. |.. +| ++|+|++|+|+ .++..+.++.+|+.|+|++|.|++.++...+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 7 655 77 99999999999 57888888999999999999999977655443
No 95
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.5e-20 Score=212.32 Aligned_cols=201 Identities=22% Similarity=0.308 Sum_probs=137.5
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
+++.|+|++|+|+. ++..+. .+|+.|+|++|+|++ ++. .+.+|++|+|++|+|++ ++. .+.+|++|+|+
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 48999999999995 566555 799999999999995 444 68999999999999984 454 68999999999
Q ss_pred CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccc----------------cch
Q 007628 97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKM----------------GKT 160 (595)
Q Consensus 97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l----------------~~~ 160 (595)
+|+|++ ++. ...+|+.|+|++|++++ ++..+ .+|++|+|++|+|++. +..+.++ ..+
T Consensus 110 ~N~l~~-l~~--~l~~L~~L~L~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~ 182 (622)
T 3g06_A 110 SNPLTH-LPA--LPSGLCKLWIFGNQLTS-LPVLP--PGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSG 182 (622)
T ss_dssp SCCCCC-CCC--CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred CCcCCC-CCC--CCCCcCEEECCCCCCCc-CCCCC--CCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCC
Confidence 999985 444 44789999999999885 44433 6789999999988752 2222111 144
Q ss_pred hhHHHhhccccCCCCCCccCC-----------------CccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628 161 LNEIILMNDNLTGCLPPQIGM-----------------LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 161 L~~L~Ls~N~l~g~ip~~~~~-----------------L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
|++|+|++|+|++ ++..+.+ +.+|++|+|++|+|++ ++ ..+.+|++|+|++|+|++ +
T Consensus 183 L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-l 256 (622)
T 3g06_A 183 LQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-L 256 (622)
T ss_dssp CCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred CcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-C
Confidence 6666666666654 2221111 1345555555555553 33 334556666666666652 3
Q ss_pred chhccCCCCCcEEEcccccCC
Q 007628 224 PSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 224 P~~l~~l~~L~~L~Ls~N~Ls 244 (595)
+. .+.+|+.|+|++|+|+
T Consensus 257 p~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CC---CCTTCCEEECCSSCCC
T ss_pred Cc---ccccCcEEeCCCCCCC
Confidence 33 4456666777777666
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.4e-21 Score=203.60 Aligned_cols=217 Identities=12% Similarity=0.125 Sum_probs=165.4
Q ss_pred eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCc-hhcCCCCCCCE-EEcc
Q 007628 19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP-KLFLSLPKLKY-LDLR 96 (595)
Q Consensus 19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp-~~l~~L~~L~~-LdLs 96 (595)
++++.++++|+. ++..| ..+|++|+|++|+|+.+..++|++|.+|++|+|++|+|.+.++ ++|.+|.+|++ ++++
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 467889999986 56655 4689999999999997777789999999999999999876665 57889988775 6777
Q ss_pred CCCCCCCCCccccc-cCCCeeeccCCccccCCCccc-CCCCceeEEeec-cCCCCCcCcccccccchhhHHHhhccccCC
Q 007628 97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFAN-NDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173 (595)
Q Consensus 97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~-N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g 173 (595)
+|+|++..+..+.. .+|++|+|++|++.+.....+ ...++.+|++.+ |++.......|..+...+++|+|++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 89998544444433 799999999999986554433 346778888876 566655556676665678999999999984
Q ss_pred CCCCccCCCccceEEeccC-ccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccccc
Q 007628 174 CLPPQIGMLKNLTVFDVSF-NHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY 242 (595)
Q Consensus 174 ~ip~~~~~L~~L~~LdLs~-N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~ 242 (595)
+...+..+.+|++|+|++ |.++..-.++|..+.+|++|||++|+|+..-...| .+|+.|.+.++.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~ 234 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTY 234 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCT
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCC
Confidence 455555667899999986 56664434578999999999999999995544444 456666655543
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=5.6e-24 Score=230.45 Aligned_cols=233 Identities=13% Similarity=0.098 Sum_probs=119.7
Q ss_pred CCCCCceeEEEccCCCCCCCCchhhc-----CCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCcCch
Q 007628 12 SPSLRVVASIDLNHADIAGYLPPEIG-----RLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGKFPK 82 (595)
Q Consensus 12 ~~~l~~L~~LdLs~n~i~~~lp~~~~-----~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~lp~ 82 (595)
+.++.+|+.|+|++|.|++.....|. .+.+|++|+|++|+|++. +...|.++.+|++|+|++|+|++....
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 34566777777777776543222222 244577777777776653 244455566677777766666533222
Q ss_pred hcC-----CCCCCCEEEccCCCCCCC----CCccccc-cCCCeeeccCCccccCCC----ccc--CCCCceeEEeeccCC
Q 007628 83 LFL-----SLPKLKYLDLRFNEFEGS----VPSKLFD-KDLDAIFLNDNRFQFGIP----ENL--GNSPVSVLVFANNDL 146 (595)
Q Consensus 83 ~l~-----~L~~L~~LdLs~N~l~g~----ip~~l~~-~~L~~L~L~~N~l~~~~p----~~l--~~~~L~~L~L~~N~l 146 (595)
.|. .+.+|++|+|++|+|++. +...+.. .+|++|+|++|++.+... ..+ ...+|++|+|++|+|
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 221 244566666666666532 1222211 456666666665543211 111 124455555555555
Q ss_pred CCC----cCcccccccc-----------------------------hhhHHHhhccccCCC----CCCccCCCccceEEe
Q 007628 147 GGC----IPGSIGKMGK-----------------------------TLNEIILMNDNLTGC----LPPQIGMLKNLTVFD 189 (595)
Q Consensus 147 ~~~----ip~~l~~l~~-----------------------------~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~Ld 189 (595)
++. +...+..+ . +|++|+|++|.+++. +...|..+.+|++||
T Consensus 269 ~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 432 22223223 3 444455555544432 223344456666666
Q ss_pred ccCccccCCCCCCcCC-----CCCccEEEccCCcCCC----CCchhccCCCCCcEEEcccccCCC
Q 007628 190 VSFNHLQGSLPSSIGN-----MKSLEQLNVAHNRFTG----VIPSSVCQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 190 Ls~N~L~g~lP~~l~~-----L~~L~~L~Ls~N~Lsg----~iP~~l~~l~~L~~L~Ls~N~Lsg 245 (595)
|++|.|++.....+.+ +.+|++|+|++|+|++ .+...+..+.+|++|||++|+|++
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 6666665433222221 4566666666666664 455556666666666666666654
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=6.8e-21 Score=187.33 Aligned_cols=80 Identities=24% Similarity=0.346 Sum_probs=69.4
Q ss_pred eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCC
Q 007628 19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98 (595)
Q Consensus 19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N 98 (595)
+.+++++++++. ++..+. .+|++|+|++|+|+++....|.++.+|++|+|++|+|+++.++.|.+|.+|++|||++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578999999886 454443 68999999999999888888999999999999999999888889999999999999999
Q ss_pred CCC
Q 007628 99 EFE 101 (595)
Q Consensus 99 ~l~ 101 (595)
+|+
T Consensus 91 ~l~ 93 (220)
T 2v9t_B 91 KIT 93 (220)
T ss_dssp CCC
T ss_pred cCC
Confidence 887
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=188.26 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=66.3
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
.+.|++++|+|+. ++..+. ..+++|+|++|+|+++.. ..|.++.+|++|+|++|+|+++....|.++.+|++|||+
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3589999999887 455543 356899999999997754 458899999999999999998777788899999999999
Q ss_pred CCCCC
Q 007628 97 FNEFE 101 (595)
Q Consensus 97 ~N~l~ 101 (595)
+|+|+
T Consensus 90 ~N~l~ 94 (220)
T 2v70_A 90 SNRLE 94 (220)
T ss_dssp SSCCC
T ss_pred CCccC
Confidence 88887
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.9e-23 Score=226.27 Aligned_cols=231 Identities=17% Similarity=0.150 Sum_probs=141.2
Q ss_pred CCCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCCCCCchhh-cCCC----CCCEEeccCCcCCC----cC
Q 007628 14 SLRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFCGVVPSTF-RRLK----LLYEVDLSNNRFVG----KF 80 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~-~~L~----~L~~L~Ls~N~Lsg----~l 80 (595)
.+.+|+.|+|++|+|++. +...|.++.+|++|+|++|+|.+.....| ..+. +|++|+|++|+|+. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 456778888888887742 34556777888888888888765433333 3344 68888888888773 45
Q ss_pred chhcCCCCCCCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCccc-----CCCCceeEEeeccCCCCC
Q 007628 81 PKLFLSLPKLKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENL-----GNSPVSVLVFANNDLGGC 149 (595)
Q Consensus 81 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l-----~~~~L~~L~L~~N~l~~~ 149 (595)
...|.++.+|++|||++|.|++.....+.. .+|++|+|++|++++.....+ ...+|++|+|++|.+++.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 677778888888888888876432222221 257788888777765332111 125677777777776654
Q ss_pred cCcccccc----cchhhHHHhhccccCCC----CCCccCCCccceEEeccCccccCCC-----CCCcCCCCCccEEEccC
Q 007628 150 IPGSIGKM----GKTLNEIILMNDNLTGC----LPPQIGMLKNLTVFDVSFNHLQGSL-----PSSIGNMKSLEQLNVAH 216 (595)
Q Consensus 150 ip~~l~~l----~~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~L~g~l-----P~~l~~L~~L~~L~Ls~ 216 (595)
....+.+. ..+|++|+|++|++++. +...|..+.+|++|+|++|.|++.. ...+..+.+|++|+|++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 33333321 13667777777766643 3445555666777777777665321 11122456666666666
Q ss_pred CcCCCC----CchhccCCCCCcEEEcccccCC
Q 007628 217 NRFTGV----IPSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 217 N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Ls 244 (595)
|+|++. +...+.++.+|++|+|++|.|+
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 666643 4445555666666666666554
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=4e-21 Score=202.88 Aligned_cols=178 Identities=17% Similarity=0.238 Sum_probs=121.5
Q ss_pred eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhc-CCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628 19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR-RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97 (595)
Q Consensus 19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~-~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~ 97 (595)
+++++++++|+. ++..+. ..|+.|+|++|+|+++....|. +|.+|++|+|++|+|+++..+.|.+|.+|++|||++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578999999887 455443 4588999999999988888887 899999999999999987778899999999999999
Q ss_pred CCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCC
Q 007628 98 NEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPP 177 (595)
Q Consensus 98 N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~ 177 (595)
|+|++.....+ ..+ .+|++|+|++|+|.+..+.
T Consensus 98 N~l~~~~~~~~----------------------------------------------~~l-~~L~~L~L~~N~i~~~~~~ 130 (361)
T 2xot_A 98 NHLHTLDEFLF----------------------------------------------SDL-QALEVLLLYNNHIVVVDRN 130 (361)
T ss_dssp SCCCEECTTTT----------------------------------------------TTC-TTCCEEECCSSCCCEECTT
T ss_pred CcCCcCCHHHh----------------------------------------------CCC-cCCCEEECCCCcccEECHH
Confidence 99873221111 111 2333344444444434445
Q ss_pred ccCCCccceEEeccCccccCCCCCCc---CCCCCccEEEccCCcCCCCCchhccCCCC--CcEEEcccccCCCC
Q 007628 178 QIGMLKNLTVFDVSFNHLQGSLPSSI---GNMKSLEQLNVAHNRFTGVIPSSVCQLPN--LQNFTYSFNYFTGE 246 (595)
Q Consensus 178 ~~~~L~~L~~LdLs~N~L~g~lP~~l---~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~--L~~L~Ls~N~Lsg~ 246 (595)
.|..|.+|++|+|++|+|++.....| ..+.+|++|+|++|+|++.....|..+.+ |+.|+|++|.|.++
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 56666777777777777764333333 45677777777777777555556666655 36677777777653
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.5e-20 Score=192.78 Aligned_cols=171 Identities=22% Similarity=0.358 Sum_probs=130.1
Q ss_pred CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.+.+|+.|+|++|+|.++ ..|.++.+|++|+|++|+|+++.. |.++.+|++|+|++|+|++. . .|.++.+|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEE
Confidence 467799999999999876 468999999999999999997654 99999999999999999863 3 48999999999
Q ss_pred EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628 94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173 (595)
Q Consensus 94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g 173 (595)
||++|+|++ +.......+|++|+|++|++++ . ..+..+ .+|++|+|++|++.+
T Consensus 118 ~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~-----------------------~--~~l~~l-~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 118 SLEHNGISD-INGLVHLPQLESLYLGNNKITD-----------------------I--TVLSRL-TKLDTLSLEDNQISD 170 (291)
T ss_dssp ECTTSCCCC-CGGGGGCTTCCEEECCSSCCCC-----------------------C--GGGGGC-TTCSEEECCSSCCCC
T ss_pred ECCCCcCCC-ChhhcCCCCCCEEEccCCcCCc-----------------------c--hhhccC-CCCCEEEccCCcccc
Confidence 999999985 3322222566666666666553 2 334444 566666666666665
Q ss_pred CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG 221 (595)
Q Consensus 174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg 221 (595)
... |..+.+|++|+|++|.|++ + ..+..+.+|+.|+|++|+|++
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~-l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred chh--hcCCCccCEEECCCCcCCC-C-hhhccCCCCCEEECcCCcccC
Confidence 433 6777788888888888874 3 347778888888888888765
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.4e-19 Score=178.90 Aligned_cols=156 Identities=23% Similarity=0.267 Sum_probs=101.5
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
.++.+++++++++. ++..+ ..+|++|+|++|+|+++.+..|.++.+|++|+|++|+|+++....|.++.+|++|||+
T Consensus 20 s~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 35567777777665 33333 2667777777777777767777777777777777777765555666777777777777
Q ss_pred CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628 97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176 (595)
Q Consensus 97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip 176 (595)
+|+|++ ...
T Consensus 97 ~N~l~~-----------------------------------------------------------------------l~~ 105 (229)
T 3e6j_A 97 TNQLTV-----------------------------------------------------------------------LPS 105 (229)
T ss_dssp SSCCCC-----------------------------------------------------------------------CCT
T ss_pred CCcCCc-----------------------------------------------------------------------cCh
Confidence 776652 112
Q ss_pred CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247 (595)
Q Consensus 177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~ 247 (595)
..|..+.+|++|+|++|+|+ .++..+..+.+|++|+|++|+|++.....|..+.+|+.|+|++|.|++..
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 23344556666666666666 55666666666677777776666555556666666777777777666553
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=3.2e-20 Score=209.15 Aligned_cols=173 Identities=20% Similarity=0.307 Sum_probs=143.7
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
..|..|+.|+|++|+|..+ ..|..|.+|+.|+|++|+|.++.. |.+|.+|+.|+|++|+|++. . .|.+|.+|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCE
Confidence 3577899999999999875 369999999999999999997654 99999999999999999964 3 7899999999
Q ss_pred EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
|+|++|+|.+ +.......+|+.|+|++|++++. .....+.+|++|+|++|+|++..+ |..+ .+|++|+|++|+|.
T Consensus 114 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCC
T ss_pred EEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccC-CCCCEEECcCCCCC
Confidence 9999999995 44433448899999999999865 444455788999999999887665 6666 78888888888888
Q ss_pred CCCCCccCCCccceEEeccCccccCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGS 198 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~ 198 (595)
+. ..|..|.+|+.|+|++|.|.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 64 4688888889999988888754
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=2.5e-21 Score=195.73 Aligned_cols=172 Identities=19% Similarity=0.309 Sum_probs=122.0
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
..+.+++.++|++++|+++. .+.++.+|++|+|++|+|+.+ . .|.++.+|++|+|++|+|++... |.+|.+|++
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 46677888999999998754 688899999999999999854 3 78999999999999999996544 899999999
Q ss_pred EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628 93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172 (595)
Q Consensus 93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~ 172 (595)
|+|++|+|++ ++.... .+|++|+|++|++++. . .+..+ .+|++|+|++|+|+
T Consensus 90 L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~~-~------------------------~l~~l-~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRDT-D------------------------SLIHL-KNLEILSIRNNKLK 141 (263)
T ss_dssp EECCSSCCSC-CTTCCC-SSCCEEECCSSCCSBS-G------------------------GGTTC-TTCCEEECTTSCCC
T ss_pred EECCCCccCC-cCcccc-CcccEEEccCCccCCC-h------------------------hhcCc-ccccEEECCCCcCC
Confidence 9999999984 433333 5666666666665532 1 23333 44555555555554
Q ss_pred CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCC
Q 007628 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV 222 (595)
Q Consensus 173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~ 222 (595)
+. ..|+.|.+|++|+|++|.|++. ..|..+.+|++|+|++|.+++.
T Consensus 142 ~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 142 SI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 33 2455666666666666666644 5566666666666666666543
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.1e-18 Score=172.43 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=119.5
Q ss_pred ceecccCCCC---CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCC
Q 007628 2 GVFCARSPFN---SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVG 78 (595)
Q Consensus 2 gv~C~~~~~~---~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg 78 (595)
+|.|...... ..-..+|+.|+|++|+|+++.+..|.++.+|++|+|++|+|.++....|.+|.+|++|+|++|+|++
T Consensus 23 ~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc
Confidence 5677654322 1123679999999999999999999999999999999999998777889999999999999999998
Q ss_pred cCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCccccccc
Q 007628 79 KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMG 158 (595)
Q Consensus 79 ~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~ 158 (595)
+....|..+.+|++|+|++|+|+ .+
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~l~-~l------------------------------------------------------ 127 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNKLT-EL------------------------------------------------------ 127 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-SC------------------------------------------------------
T ss_pred cChhHhCcchhhCeEeccCCccc-cc------------------------------------------------------
Confidence 87888899999999999999886 22
Q ss_pred chhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628 159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 159 ~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
+..|..+.+|++|+|++|+|++.....|..+.+|++|+|++|.|.+..
T Consensus 128 -----------------p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 128 -----------------PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp -----------------CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred -----------------CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 123344566777777777777655566777777888888888777553
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=1.5e-22 Score=226.63 Aligned_cols=191 Identities=22% Similarity=0.261 Sum_probs=152.3
Q ss_pred cCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-------------CCCcCchhcCCCCCCCEEE-ccCCCCCC
Q 007628 37 GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-------------FVGKFPKLFLSLPKLKYLD-LRFNEFEG 102 (595)
Q Consensus 37 ~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-------------Lsg~lp~~l~~L~~L~~Ld-Ls~N~l~g 102 (595)
..+.+|+.|+|++|+|+ .++.+|++|.+|+.|+|++|. +.+.++..|.+|.+|+.|| +++|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56777888888888886 678888888888888887665 4556666777777777777 6665442
Q ss_pred CCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCC
Q 007628 103 SVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGML 182 (595)
Q Consensus 103 ~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L 182 (595)
+|+.++|.+|.+... ....|++|+|++|+|++ ++. |+.+ .+|++|+|++|+|+ .++..|+.|
T Consensus 424 ---------~L~~l~l~~n~i~~l-----~~~~L~~L~Ls~n~l~~-lp~-~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKM-----EYADVRVLHLAHKDLTV-LCH-LEQL-LLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp ---------HHHHHHHHHHHHHHH-----HHTTCSEEECTTSCCSS-CCC-GGGG-TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred ---------hhhhhhhhccccccc-----CccCceEEEecCCCCCC-CcC-cccc-ccCcEeecCccccc-ccchhhhcC
Confidence 455556666665432 11347889999999986 555 8877 78999999999998 788899999
Q ss_pred ccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC-chhccCCCCCcEEEcccccCCCCCCc
Q 007628 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI-PSSVCQLPNLQNFTYSFNYFTGEPPS 249 (595)
Q Consensus 183 ~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i-P~~l~~l~~L~~L~Ls~N~Lsg~~p~ 249 (595)
.+|++|+|++|+|++ ++ .|+.|.+|++|+|++|+|++.+ +..|++|.+|+.|+|++|.|++.+..
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 999999999999996 66 8999999999999999999886 89999999999999999999987653
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=1.7e-19 Score=182.31 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=136.2
Q ss_pred CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeee
Q 007628 38 RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF 117 (595)
Q Consensus 38 ~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~ 117 (595)
++.+|+.|+|++|.|+++. .+.+|.+|++|+|++|+|+. +. .|..+.+|++|+|++|+|++... .....+|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 4667788899999998654 68899999999999999984 44 68889999999999999985433 22225666666
Q ss_pred ccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccC
Q 007628 118 LNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG 197 (595)
Q Consensus 118 L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g 197 (595)
|++|++++. .. +.. .+|++|+|++|++++. ..|+.|.+|++|+|++|+|++
T Consensus 92 L~~N~l~~l------------------------~~-~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 92 VNRNRLKNL------------------------NG-IPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCSSCCSCC------------------------TT-CCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc------------------------Cc-ccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 666665531 11 111 4566677777776653 468899999999999999996
Q ss_pred CCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 198 ~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
. ..++.+.+|++|+|++|+|++. ..+.++.+|+.|+|++|.+++...
T Consensus 143 ~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 143 I--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp C--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred C--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 4 3789999999999999999976 789999999999999999988743
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=2.3e-19 Score=206.53 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=119.0
Q ss_pred ceeEEEccCCCCCCC---------CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCC
Q 007628 17 VVASIDLNHADIAGY---------LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSL 87 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~---------lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L 87 (595)
.++.++|++|+|.++ ..+.|..+..|++|+|++|+|. .++..+.+|.+|++|+|++|+|+ .++..|.+|
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 455666666665543 3566888999999999999998 67777779999999999999999 788889999
Q ss_pred CCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHH
Q 007628 88 PKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEII 165 (595)
Q Consensus 88 ~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~ 165 (595)
.+|++|||++|+|+ .++..+.. .+|++|+|++|+|+ .++..|.. .+|++|+|++|.|++.++..++.+...+..|+
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 99999999999999 77777665 78999999999987 55655544 68999999999999999888877644556688
Q ss_pred hhccccCCCCCCccCCCccceEEeccCc--------cccCCCCCCcCCCCCccEEEccCCcCC
Q 007628 166 LMNDNLTGCLPPQIGMLKNLTVFDVSFN--------HLQGSLPSSIGNMKSLEQLNVAHNRFT 220 (595)
Q Consensus 166 Ls~N~l~g~ip~~~~~L~~L~~LdLs~N--------~L~g~lP~~l~~L~~L~~L~Ls~N~Ls 220 (595)
|.+|.+++.++.++ +.|+|++| .|.+.+...+.++.+++.+.+++|.+.
T Consensus 348 l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 348 LRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred hccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 99999998877654 45556555 344444445566777777788888775
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.7e-18 Score=168.68 Aligned_cols=135 Identities=21% Similarity=0.295 Sum_probs=112.3
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL 95 (595)
.+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++.++.|.+|.+|++|+|++|+|+++....|.++.+|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 47999999999999988889999999999999999999999999999999999999999999777777899999999999
Q ss_pred cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628 96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL 175 (595)
Q Consensus 96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i 175 (595)
++|+|++..
T Consensus 112 ~~N~l~~~~----------------------------------------------------------------------- 120 (220)
T 2v9t_B 112 NANKINCLR----------------------------------------------------------------------- 120 (220)
T ss_dssp CSSCCCCCC-----------------------------------------------------------------------
T ss_pred CCCCCCEeC-----------------------------------------------------------------------
Confidence 999887321
Q ss_pred CCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628 176 PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG 221 (595)
Q Consensus 176 p~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg 221 (595)
+..|..|.+|++|+|++|+|++.....|..+.+|++|+|++|.|..
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 1234456667777777777776666667777777777777777764
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=4e-20 Score=212.82 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=120.2
Q ss_pred CceeEEEccCCCCCCCCchhhcCCCCCcE-----EEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 16 RVVASIDLNHADIAGYLPPEIGRLTDLAI-----FHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~-----L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
..++.|+|.+|++..+ ...+..+.+|+. +++..|++. +..+.|..+.+|++|+|++|+|. .++..+.+|.+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 4588899999988773 333333333333 333444444 55778999999999999999998 677777799999
Q ss_pred CEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhc
Q 007628 91 KYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN 168 (595)
Q Consensus 91 ~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~ 168 (595)
++|+|++|+|+ .++..+.. .+|++|+|++|+|+ .++..+.. .+|++|+|++|.|+ .++.+|+.+ .+|++|+|++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l-~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL-CNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSC-TTCCCEECTT
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcC-CCccEEeCCC
Confidence 99999999999 78876655 89999999999999 66766654 78999999999997 778888888 8999999999
Q ss_pred cccCCCCCCccCCCcc-ceEEeccCccccCCCCCCcCCCCCccEEEccCC--------cCCCCCchhccCCCCCcEEEcc
Q 007628 169 DNLTGCLPPQIGMLKN-LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHN--------RFTGVIPSSVCQLPNLQNFTYS 239 (595)
Q Consensus 169 N~l~g~ip~~~~~L~~-L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N--------~Lsg~iP~~l~~l~~L~~L~Ls 239 (595)
|.|++.++..|..+.. +..|+|++|.++|.++..+ +.|+|++| .|.+.+...+.++.+++.+.++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls 399 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS 399 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeee
Confidence 9999988888876533 3458899999998887754 44555555 4555555566677777888889
Q ss_pred cccCCC
Q 007628 240 FNYFTG 245 (595)
Q Consensus 240 ~N~Lsg 245 (595)
+|.+++
T Consensus 400 ~Nil~~ 405 (727)
T 4b8c_D 400 YNTLCQ 405 (727)
T ss_dssp --CCCG
T ss_pred cccccc
Confidence 998863
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=3.8e-22 Score=223.33 Aligned_cols=204 Identities=16% Similarity=0.122 Sum_probs=153.0
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCc-------------CCCCCchhhcCCCCCCEEe-ccCCcCCC
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNR-------------FCGVVPSTFRRLKLLYEVD-LSNNRFVG 78 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~-------------l~~~lp~~~~~L~~L~~L~-Ls~N~Lsg 78 (595)
-.+..|+.|+|++|+|+ .++..|++|++|+.|+|++|. +.+.++..|++|.+|+.|+ ++.|++.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677889999999997 479999999999999998775 6677888899999999999 6776543
Q ss_pred cCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCccccccc
Q 007628 79 KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMG 158 (595)
Q Consensus 79 ~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~ 158 (595)
+|+.|+|++|.|++ +....|+.|+|++|++++ ++......+|++|+|++|+|+ .++..|+.+
T Consensus 424 ----------~L~~l~l~~n~i~~-----l~~~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l- 485 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-----MEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAAL- 485 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-----HHHTTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGC-
T ss_pred ----------hhhhhhhhcccccc-----cCccCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcC-
Confidence 23333344443331 111234444444444443 233233356777777777777 677888888
Q ss_pred chhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCC-CCCcCCCCCccEEEccCCcCCCCCch---hccCCCCCc
Q 007628 159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSL-PSSIGNMKSLEQLNVAHNRFTGVIPS---SVCQLPNLQ 234 (595)
Q Consensus 159 ~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~l-P~~l~~L~~L~~L~Ls~N~Lsg~iP~---~l~~l~~L~ 234 (595)
.+|++|+|++|+|++ ++ .|+.|.+|++|+|++|+|++.. +..|+.|.+|++|+|++|.|++..+. .+..+.+|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 789999999999986 55 8999999999999999999876 89999999999999999999976542 345588999
Q ss_pred EEEc
Q 007628 235 NFTY 238 (595)
Q Consensus 235 ~L~L 238 (595)
.||+
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 9975
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=4.1e-19 Score=171.13 Aligned_cols=89 Identities=13% Similarity=0.276 Sum_probs=63.4
Q ss_pred cccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCcc-ccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCC
Q 007628 152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNH-LQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL 230 (595)
Q Consensus 152 ~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~-L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l 230 (595)
..|+.+ .+|++|+|++|++++.+...|+.|.+|++|+|++|. ++ .+. .|..|.+|++|+|++|+|++.. .+.++
T Consensus 106 ~~l~~l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l 180 (197)
T 4ezg_A 106 PNLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDF 180 (197)
T ss_dssp CCCTTC-TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGC
T ss_pred hhhcCC-CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccC
Confidence 334444 455666666666655555667778889999999998 54 554 6888899999999999998643 78888
Q ss_pred CCCcEEEcccccCCC
Q 007628 231 PNLQNFTYSFNYFTG 245 (595)
Q Consensus 231 ~~L~~L~Ls~N~Lsg 245 (595)
.+|++|+|++|+|.+
T Consensus 181 ~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 181 PKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSCCEEEECBC----
T ss_pred CCCCEEEeeCcccCC
Confidence 999999999998764
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=7.3e-19 Score=169.34 Aligned_cols=157 Identities=13% Similarity=0.186 Sum_probs=110.0
Q ss_pred hhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCC
Q 007628 35 EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLD 114 (595)
Q Consensus 35 ~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~ 114 (595)
..+++.+|+.|+|++|+|.. +. .|..+.+|++|+|++|+++.. ..|.++.+|++|+|++|+|++.....+..
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---- 110 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSG---- 110 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTT----
T ss_pred ChhhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcC----
Confidence 34667788888888888884 34 688888888888888876632 46788888888888888887533332221
Q ss_pred eeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCcc
Q 007628 115 AIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNH 194 (595)
Q Consensus 115 ~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~ 194 (595)
..+|++|+|++|++++.+...|+.+ .+|++|+|++|++.+.+. .|..|.+|++|+|++|.
T Consensus 111 ------------------l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 111 ------------------LTSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp ------------------CTTCCEEECCSSBCBGGGHHHHTTC-SSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred ------------------CCCCCEEEecCCccCcHhHHHHhhC-CCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 2344555555555555555556555 667777777776333444 67889999999999999
Q ss_pred ccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628 195 LQGSLPSSIGNMKSLEQLNVAHNRFTG 221 (595)
Q Consensus 195 L~g~lP~~l~~L~~L~~L~Ls~N~Lsg 221 (595)
|++ +. .+..+.+|++|+|++|+|.+
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 985 33 78899999999999999864
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.1e-18 Score=184.00 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=127.4
Q ss_pred CEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCC
Q 007628 67 YEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDL 146 (595)
Q Consensus 67 ~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l 146 (595)
+.|++++|+|+ .++..+. ..|++|||++|+|++.....+. ....+|++|+|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~---------------------~~l~~L~~L~L~~N~i 76 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTP---------------------TRLTNLHSLLLSHNHL 76 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSS---------------------SCCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhh---------------------hcccccCEEECCCCcC
Confidence 46777777777 3454432 3467777777777632222111 0235566777777777
Q ss_pred CCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchh
Q 007628 147 GGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSS 226 (595)
Q Consensus 147 ~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~ 226 (595)
++...+.|..+ .+|++|+|++|+|.+.....|..|.+|++|+|++|+|++..+..|.+|.+|++|+|++|+|++.....
T Consensus 77 ~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 77 NFISSEAFVPV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CccChhhccCC-CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 76666667777 78899999999988777788999999999999999999888899999999999999999999755555
Q ss_pred c---cCCCCCcEEEcccccCCCCCCccccccCC---CCcccccCCCCCC
Q 007628 227 V---CQLPNLQNFTYSFNYFTGEPPSCTAAAGG---GGRMMAARPADCS 269 (595)
Q Consensus 227 l---~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~~---~~~~~~~~~~~c~ 269 (595)
| ..+.+|+.|||++|+|++........... ....+.+|.+.|+
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 5 67999999999999999765433322211 2334555666554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=167.32 Aligned_cols=137 Identities=21% Similarity=0.261 Sum_probs=114.0
Q ss_pred CceeEEEccCCCCCCCCc-hhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 16 RVVASIDLNHADIAGYLP-PEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 16 ~~L~~LdLs~n~i~~~lp-~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
..++.|+|++|+|+++.. ..|.++.+|++|+|++|+|+++...+|.++.+|++|+|++|+|+++....|.+|.+|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 357899999999998754 5589999999999999999998888999999999999999999988888999999999999
Q ss_pred ccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC
Q 007628 95 LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC 174 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ 174 (595)
|++|+|++..
T Consensus 112 Ls~N~l~~~~---------------------------------------------------------------------- 121 (220)
T 2v70_A 112 LRSNRITCVG---------------------------------------------------------------------- 121 (220)
T ss_dssp CTTSCCCCBC----------------------------------------------------------------------
T ss_pred CCCCcCCeEC----------------------------------------------------------------------
Confidence 9999887321
Q ss_pred CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 175 ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
+..|..|.+|++|+|++|+|++..+..|..+.+|++|+|++|.|++..
T Consensus 122 -~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 122 -NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp -TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred -HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 223445667777778777777766777777777888888888777543
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.8e-18 Score=164.84 Aligned_cols=132 Identities=22% Similarity=0.318 Sum_probs=103.8
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCch-hhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPS-TFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~-~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
.+.|++++|+|+. ++..+.. +|++|+|++|+|+++... .|+++.+|++|+|++|+|+++.+..|.++.+|++|||+
T Consensus 10 ~~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4689999999865 5555543 889999999999877664 48899999999999999998888889999999999999
Q ss_pred CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628 97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176 (595)
Q Consensus 97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip 176 (595)
+|+|++. ..
T Consensus 87 ~N~l~~~-----------------------------------------------------------------------~~ 95 (192)
T 1w8a_A 87 ENKIKEI-----------------------------------------------------------------------SN 95 (192)
T ss_dssp SCCCCEE-----------------------------------------------------------------------CS
T ss_pred CCcCCcc-----------------------------------------------------------------------CH
Confidence 8887621 11
Q ss_pred CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI 223 (595)
Q Consensus 177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i 223 (595)
..|..+.+|++|+|++|+|++..++.|..+.+|++|+|++|.|++..
T Consensus 96 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 23455667888888888888777788888888888888888887654
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=6.3e-18 Score=162.41 Aligned_cols=132 Identities=19% Similarity=0.287 Sum_probs=109.0
Q ss_pred CEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcc-cccccchhhHHHhhcc
Q 007628 91 KYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGS-IGKMGKTLNEIILMND 169 (595)
Q Consensus 91 ~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~-l~~l~~~L~~L~Ls~N 169 (595)
++||+++|+|+ .++..+.. .+++|+|++|+|++..... |+.+ .+|++|+|++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~------------------------~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N 64 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL------------------------HTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRN 64 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT------------------------TCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSS
T ss_pred CEEEcCCCCcC-cCccCCCC------------------------CCCEEECCCCcCCccCCccccccC-CCCCEEECCCC
Confidence 67777777775 45543322 4555666666665555443 5556 78999999999
Q ss_pred ccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 170 NLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 170 ~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
+|++.++..|..+.+|++|+|++|+|++...+.|..+.+|++|+|++|+|++.++..|..+.+|++|+|++|.|+|...
T Consensus 65 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 65 QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9998889999999999999999999998888889999999999999999999999999999999999999999998754
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=9.7e-18 Score=174.43 Aligned_cols=228 Identities=15% Similarity=0.091 Sum_probs=143.8
Q ss_pred CCceeEEEccCCCCCCCCchhhcC-CCCCcEEEccCCcCC--------------------CCCchhhcC--------CCC
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGR-LTDLAIFHINSNRFC--------------------GVVPSTFRR--------LKL 65 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~-L~~L~~L~Ls~N~l~--------------------~~lp~~~~~--------L~~ 65 (595)
+.+|+.|+|+++ |....-..+.+ +.+|++|||++|+|. .+-..+|.+ |.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 334666666543 22111122222 556666777666666 223356777 899
Q ss_pred CCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCc--cc---cCCC--cccCCCCce-
Q 007628 66 LYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNR--FQ---FGIP--ENLGNSPVS- 137 (595)
Q Consensus 66 L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~--l~---~~~p--~~l~~~~L~- 137 (595)
|+.|+|.+ +|+.+-..+|.+|.+|++|+|++|.+. .|....|...++.+.|..+. .. ..+. .+.....|+
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 99999988 788666778999999999999999887 56666665433333333222 10 0000 011111222
Q ss_pred -------------------------eEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccC
Q 007628 138 -------------------------VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSF 192 (595)
Q Consensus 138 -------------------------~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~ 192 (595)
.+.+.++ +....-..+.+.+.+|+.|+|.+|++..+-..+|.+|.+|++|+|.+
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 2222222 11111111222236788899999888877777899999999999998
Q ss_pred ccccCCCCCCcCCCCCcc-EEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 193 NHLQGSLPSSIGNMKSLE-QLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 193 N~L~g~lP~~l~~L~~L~-~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
| ++..-..+|.+|.+|+ .|+|.+ +++..-..+|.+|.+|+.|+|++|.++..-.
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 8 7766677889999998 999988 6765666889999999999998888875544
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=3.1e-19 Score=199.34 Aligned_cols=234 Identities=13% Similarity=0.033 Sum_probs=161.8
Q ss_pred CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCEEeccCCcCCCcCchhcCCCCC
Q 007628 11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPK 89 (595)
Q Consensus 11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~ 89 (595)
....+.+|+.|+|+++.. +.++..+..+.+|++|+|++|.|++... ..+.++.+|++|+|+++...+.+...+.++++
T Consensus 265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 345666777788877533 3456677788889999999988765433 34678899999999844333334445567888
Q ss_pred CCEEEccC-----------CCCCCCCCcccc--ccCCCeeeccCCccccCCCcccC--CCCceeEEee----ccCCCCC-
Q 007628 90 LKYLDLRF-----------NEFEGSVPSKLF--DKDLDAIFLNDNRFQFGIPENLG--NSPVSVLVFA----NNDLGGC- 149 (595)
Q Consensus 90 L~~LdLs~-----------N~l~g~ip~~l~--~~~L~~L~L~~N~l~~~~p~~l~--~~~L~~L~L~----~N~l~~~- 149 (595)
|++|+|++ |.+++..-..++ ..+|++|+|..|++++.....+. ..+|+.|+|. .|++++.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 99999993 555532222222 26899999988888765444443 4578899986 5667653
Q ss_pred ----cCcccccccchhhHHHhhcc--ccCCCCCCccCC-CccceEEeccCccccC-CCCCCcCCCCCccEEEccCCcCCC
Q 007628 150 ----IPGSIGKMGKTLNEIILMND--NLTGCLPPQIGM-LKNLTVFDVSFNHLQG-SLPSSIGNMKSLEQLNVAHNRFTG 221 (595)
Q Consensus 150 ----ip~~l~~l~~~L~~L~Ls~N--~l~g~ip~~~~~-L~~L~~LdLs~N~L~g-~lP~~l~~L~~L~~L~Ls~N~Lsg 221 (595)
+...+..+ .+|++|+|++| .+++.....++. +.+|++|+|++|++++ .+...+..+.+|++|+|++|.|++
T Consensus 424 ~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 424 LDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 22224444 77888888643 344433333433 7889999999999875 344456788999999999999875
Q ss_pred C-CchhccCCCCCcEEEcccccCCCC
Q 007628 222 V-IPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 222 ~-iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
. +...+..+.+|+.|+|++|++++.
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4 344556789999999999998876
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=5.4e-17 Score=151.81 Aligned_cols=134 Identities=20% Similarity=0.166 Sum_probs=79.8
Q ss_pred CCCCcEEEccCCcCC-CCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeee
Q 007628 39 LTDLAIFHINSNRFC-GVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF 117 (595)
Q Consensus 39 L~~L~~L~Ls~N~l~-~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~ 117 (595)
..+|++|+|++|+|+ +.++..|.++.+|++|+|++|+|++. ..|.++.+|++|||++|+|++.++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~------------ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD------------ 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH------------
Confidence 356677777777766 55666666677777777777776654 566666667777776666653221
Q ss_pred ccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccC
Q 007628 118 LNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG 197 (595)
Q Consensus 118 L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g 197 (595)
..+..|.+|++|+|++|.|++
T Consensus 89 -----------------------------------------------------------~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 89 -----------------------------------------------------------MLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp -----------------------------------------------------------HHHHHCTTCCEEECBSSSCCS
T ss_pred -----------------------------------------------------------HHHhhCCCCCEEeccCCccCc
Confidence 122234455666666666553
Q ss_pred CC-CCCcCCCCCccEEEccCCcCCCCCc---hhccCCCCCcEEEcccccCCC
Q 007628 198 SL-PSSIGNMKSLEQLNVAHNRFTGVIP---SSVCQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 198 ~l-P~~l~~L~~L~~L~Ls~N~Lsg~iP---~~l~~l~~L~~L~Ls~N~Lsg 245 (595)
.. ...|..+.+|++|+|++|.|++... ..|..+.+|++|++++|.+..
T Consensus 110 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 110 ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 21 1455566666666666666664443 356666666666666666543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=2.8e-17 Score=153.77 Aligned_cols=86 Identities=23% Similarity=0.342 Sum_probs=79.3
Q ss_pred CCCceeEEEccCCCCC-CCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628 14 SLRVVASIDLNHADIA-GYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92 (595)
Q Consensus 14 ~l~~L~~LdLs~n~i~-~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~ 92 (595)
...+|+.|+|++|+|+ +.++..|.++.+|++|+|++|+|+++ ..|.++.+|++|+|++|+|++.++..+.++.+|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4578999999999998 66788889999999999999999976 88999999999999999999888888888999999
Q ss_pred EEccCCCCC
Q 007628 93 LDLRFNEFE 101 (595)
Q Consensus 93 LdLs~N~l~ 101 (595)
|||++|+|+
T Consensus 100 L~Ls~N~l~ 108 (168)
T 2ell_A 100 LNLSGNKLK 108 (168)
T ss_dssp EECBSSSCC
T ss_pred EeccCCccC
Confidence 999999987
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=6.8e-17 Score=155.54 Aligned_cols=94 Identities=20% Similarity=0.259 Sum_probs=76.8
Q ss_pred cccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC
Q 007628 152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP 231 (595)
Q Consensus 152 ~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~ 231 (595)
..|..+ .+|++|+|++|+|++.....|.+|.+|++|+|++|+|++..++.|..|.+|++|+|++|+|++.....|..+.
T Consensus 48 ~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 48 KELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126 (193)
T ss_dssp GGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred HHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence 344444 5677777777777766677788889999999999999988788899999999999999999876667788899
Q ss_pred CCcEEEcccccCCCC
Q 007628 232 NLQNFTYSFNYFTGE 246 (595)
Q Consensus 232 ~L~~L~Ls~N~Lsg~ 246 (595)
+|+.|+|++|.|.++
T Consensus 127 ~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 127 ALSHLAIGANPLYCD 141 (193)
T ss_dssp TCCEEECCSSCEECS
T ss_pred cccEEEeCCCCeecC
Confidence 999999999998764
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=149.86 Aligned_cols=129 Identities=22% Similarity=0.328 Sum_probs=100.8
Q ss_pred eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCC
Q 007628 19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98 (595)
Q Consensus 19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N 98 (595)
++|++++|+|+. ++..+. .+|++|+|++|+|+ .++..|.++.+|++|+|++|+|+++....|.+|.+|++|||++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 578999999886 444443 57899999999998 56688999999999999999999887788888999999999888
Q ss_pred CCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCc
Q 007628 99 EFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ 178 (595)
Q Consensus 99 ~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~ 178 (595)
+|++ .....
T Consensus 89 ~l~~-----------------------------------------------------------------------i~~~~ 97 (193)
T 2wfh_A 89 RLRC-----------------------------------------------------------------------IPPRT 97 (193)
T ss_dssp CCCB-----------------------------------------------------------------------CCTTT
T ss_pred ccCE-----------------------------------------------------------------------eCHHH
Confidence 8762 11234
Q ss_pred cCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCC
Q 007628 179 IGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV 222 (595)
Q Consensus 179 ~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~ 222 (595)
|..|.+|++|+|++|+|++.....|..+.+|++|+|++|.|.+.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 55677788888888888865555677888888888888887653
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=8.3e-17 Score=147.45 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=34.2
Q ss_pred CCCcEEEccCCcCC-CCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628 40 TDLAIFHINSNRFC-GVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE 101 (595)
Q Consensus 40 ~~L~~L~Ls~N~l~-~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~ 101 (595)
.+|+.|+|++|+|+ +.++..|.++.+|++|+|++|+|++. ..|.++.+|++|||++|+|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~ 77 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS 77 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc
Confidence 45555555555555 44555555555666666666655544 45555556666666655554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=7.9e-17 Score=147.59 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=52.2
Q ss_pred CceeEEEccCCCCC-CCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 16 RVVASIDLNHADIA-GYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 16 ~~L~~LdLs~n~i~-~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
.+|+.|+|++|+|+ +.++..|..+.+|++|+|++|+|+++ ..|+++.+|++|+|++|+|++.++..+.++.+|++||
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 44555566666666666666666654 5566666666666666666655555555566666666
Q ss_pred ccCCCCC
Q 007628 95 LRFNEFE 101 (595)
Q Consensus 95 Ls~N~l~ 101 (595)
|++|+|+
T Consensus 95 ls~N~i~ 101 (149)
T 2je0_A 95 LSGNKIK 101 (149)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 6666554
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.1e-15 Score=144.25 Aligned_cols=81 Identities=23% Similarity=0.312 Sum_probs=49.1
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~ 97 (595)
++.|++++++++.+ +..+ ..+|++|+|++|+|+++....|+++.+|++|+|++|+|+++....|.++.+|++|||++
T Consensus 9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45677777776653 2222 34666666666666655555566666666666666666655555556666666666666
Q ss_pred CCCC
Q 007628 98 NEFE 101 (595)
Q Consensus 98 N~l~ 101 (595)
|+|+
T Consensus 86 N~l~ 89 (177)
T 2o6r_A 86 NKLQ 89 (177)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6554
No 128
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=4.4e-18 Score=189.93 Aligned_cols=224 Identities=14% Similarity=0.139 Sum_probs=105.8
Q ss_pred CCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCcCchhcCC
Q 007628 15 LRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLS 86 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~ 86 (595)
+.+|+.|+|++|++++. +...+.++.+|+.|+|++|+++++ +...+.++.+|++|+|++|.+.+ +...+.+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 34556666666655443 222334555666666666665522 22334455666666666665553 3344444
Q ss_pred CCCCCEEEccCCCCC--------------------------CCCCccccc-cCCCeeeccCCccccCCCc-c-cCCCCce
Q 007628 87 LPKLKYLDLRFNEFE--------------------------GSVPSKLFD-KDLDAIFLNDNRFQFGIPE-N-LGNSPVS 137 (595)
Q Consensus 87 L~~L~~LdLs~N~l~--------------------------g~ip~~l~~-~~L~~L~L~~N~l~~~~p~-~-l~~~~L~ 137 (595)
+.+|++|+++++... +.++..+.. .+|++|+|++|.+.+.... . ....+|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 555555555421111 011111111 3455555555553322111 1 1223455
Q ss_pred eEEeeccCCCCCcCcccccccchhhHHHhhc-----------cccCCC-CCCccCCCccceEEeccCccccCCCCCCcCC
Q 007628 138 VLVFANNDLGGCIPGSIGKMGKTLNEIILMN-----------DNLTGC-LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGN 205 (595)
Q Consensus 138 ~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~-----------N~l~g~-ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~ 205 (595)
+|+|. +.+.......+.....+|++|+|.+ |.+++. +...+..|.+|++|+|+.|++++.....++.
T Consensus 322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 55555 2222221122222224566666662 233211 1111233566777777666666554444444
Q ss_pred -CCCccEEEcc----CCcCCCC-----CchhccCCCCCcEEEccc
Q 007628 206 -MKSLEQLNVA----HNRFTGV-----IPSSVCQLPNLQNFTYSF 240 (595)
Q Consensus 206 -L~~L~~L~Ls----~N~Lsg~-----iP~~l~~l~~L~~L~Ls~ 240 (595)
+.+|++|+|+ .|+|++. +...+.++.+|+.|+|++
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 6677777774 5666653 333455677777777764
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=1.6e-15 Score=143.18 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=91.9
Q ss_pred CceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEc
Q 007628 135 PVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV 214 (595)
Q Consensus 135 ~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~L 214 (595)
.|++|+|++|+|++.....|..+ .+|++|+|++|+|++.....|+.+.+|++|+|++|+|++.....|..+.+|++|+|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCc-ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45556666666655544555555 67888888888888776677889999999999999999777777899999999999
Q ss_pred cCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 215 AHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 215 s~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
++|+|++.....|..+.+|++|+|++|.|++...
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999997776778889999999999999998765
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=2.5e-18 Score=165.73 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=101.3
Q ss_pred hcCCCCCcEEEccCCcCCCCCch------hhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCcccc
Q 007628 36 IGRLTDLAIFHINSNRFCGVVPS------TFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLF 109 (595)
Q Consensus 36 ~~~L~~L~~L~Ls~N~l~~~lp~------~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 109 (595)
|..+..|+.++|++++|.|.++. .|.++.+|++|+|++|+|++ ++ .|.++.+|++|||++|+|+ .++..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44556666666666666666554 77777888888888887775 44 6777777778877777776 3332221
Q ss_pred ccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEe
Q 007628 110 DKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189 (595)
Q Consensus 110 ~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~Ld 189 (595)
. + .+|++|+|++|++++ ++ .|+.+.+|++|+
T Consensus 91 ~----------------------------------------------~-~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 91 V----------------------------------------------A-DTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp H----------------------------------------------H-HHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred c----------------------------------------------C-CcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 1 1 223333333333332 11 345667888888
Q ss_pred ccCccccCCCC-CCcCCCCCccEEEccCCcCCCCCch----------hccCCCCCcEEEcccccCCC
Q 007628 190 VSFNHLQGSLP-SSIGNMKSLEQLNVAHNRFTGVIPS----------SVCQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 190 Ls~N~L~g~lP-~~l~~L~~L~~L~Ls~N~Lsg~iP~----------~l~~l~~L~~L~Ls~N~Lsg 245 (595)
|++|.|++... ..+..+.+|++|+|++|.|++.++. .+..+.+|+.|| +|.++.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88888874222 4677888888999988888766543 377888999887 666654
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.1e-15 Score=158.99 Aligned_cols=220 Identities=9% Similarity=0.012 Sum_probs=166.2
Q ss_pred CCceeEEEccCCCCC--------------------CCCchhhcC--------CCCCcEEEccCCcCCCCCchhhcCCCCC
Q 007628 15 LRVVASIDLNHADIA--------------------GYLPPEIGR--------LTDLAIFHINSNRFCGVVPSTFRRLKLL 66 (595)
Q Consensus 15 l~~L~~LdLs~n~i~--------------------~~lp~~~~~--------L~~L~~L~Ls~N~l~~~lp~~~~~L~~L 66 (595)
+.+|+.|||++|+|. .+-...|.+ |.+|+.|+|.+ +|+.+-..+|.+|.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 567999999999988 233456777 99999999999 8888888899999999
Q ss_pred CEEeccCCcCCCcCchhcCCCCCCCEEEccCCCC---CCCCCccccc--cCC--------------------------Ce
Q 007628 67 YEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEF---EGSVPSKLFD--KDL--------------------------DA 115 (595)
Q Consensus 67 ~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l---~g~ip~~l~~--~~L--------------------------~~ 115 (595)
++|+|.+|.+..+...+|.++.+|.+|++..+.+ ...+....|. ..| +.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999999999877788999988888888766321 0112211121 222 22
Q ss_pred eeccCCccccCCCccc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccce-EEeccCc
Q 007628 116 IFLNDNRFQFGIPENL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT-VFDVSFN 193 (595)
Q Consensus 116 L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~-~LdLs~N 193 (595)
+.+.++.......... ...+|+.|+|.+|+++.+-...|..+ .+|++|+|.+| +..+-..+|.+|.+|+ .|+|.+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 2222211100000000 14689999999999987666667766 89999999998 7767778899999999 999998
Q ss_pred cccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEc
Q 007628 194 HLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY 238 (595)
Q Consensus 194 ~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~L 238 (595)
+++.....+|.+|.+|++|+|++|+|+..-..+|.++.+|+.|+.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 777666789999999999999999999777789999999999864
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=9.7e-16 Score=144.68 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=41.1
Q ss_pred hhcCCCCCcEEEccCCcCCCCCchhhcCCC-CCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628 35 EIGRLTDLAIFHINSNRFCGVVPSTFRRLK-LLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE 101 (595)
Q Consensus 35 ~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~-~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~ 101 (595)
.|.++.+|++|+|++|+|+.+ . .+..+. +|++|+|++|+|++. ..|.++.+|++|||++|+|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred hcCCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc
Confidence 455666777777777777743 3 344443 777777777777754 56666777777777777665
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=1.3e-14 Score=155.50 Aligned_cols=218 Identities=14% Similarity=0.109 Sum_probs=155.7
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
+|+.|+|.++ |+.+...+|.++ +|+.|+|.+ .|..+-..+|.+|.+|+.|+|.+|+|+.+-..+|. +.+|+.|+|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4777777655 666666677775 588888875 66666667788888888888888888755555555 5788888887
Q ss_pred CCCCCCCCCccccc--cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC--
Q 007628 97 FNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT-- 172 (595)
Q Consensus 97 ~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~-- 172 (595)
+| ++ .|....|. .+|+.|+|.+| ++..-...|....|+.|.| .+.++.+....|.++ .+|+.|+|.+|.+.
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYC-PELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTC-TTCCEEEEESSCCCCC
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCC-CCCCEEEeCCccccCC
Confidence 54 55 55555554 57888888765 3333344455577888888 455665555666666 78888888877664
Q ss_pred ---CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 173 ---GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 173 ---g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
.+-..+|.+|.+|+.|+|. |.++..-..+|.+|.+|+.|+|.+| ++..-..+|.++ +|+.|+|++|.+...
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 3445678888899999998 4476566678888899999999655 665556788888 899999998876543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=1e-15 Score=144.47 Aligned_cols=85 Identities=21% Similarity=0.192 Sum_probs=73.8
Q ss_pred CCCCceeEEEccCCCCCCCCchhhcCCC-CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628 13 PSLRVVASIDLNHADIAGYLPPEIGRLT-DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91 (595)
Q Consensus 13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~-~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~ 91 (595)
..+.+|+.|+|++|+|+.+ . .+..+. +|++|+|++|+|+++ ..|.++.+|++|+|++|+|++.....|.++.+|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4567899999999999975 3 455555 999999999999976 7899999999999999999976556678999999
Q ss_pred EEEccCCCCC
Q 007628 92 YLDLRFNEFE 101 (595)
Q Consensus 92 ~LdLs~N~l~ 101 (595)
+|||++|+|+
T Consensus 92 ~L~L~~N~i~ 101 (176)
T 1a9n_A 92 ELILTNNSLV 101 (176)
T ss_dssp EEECCSCCCC
T ss_pred EEECCCCcCC
Confidence 9999999986
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1e-17 Score=161.45 Aligned_cols=154 Identities=16% Similarity=0.263 Sum_probs=112.2
Q ss_pred CCceeEEEccCCCCCCCCch------hhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCC
Q 007628 15 LRVVASIDLNHADIAGYLPP------EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLP 88 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~------~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~ 88 (595)
+.+|+.++|+++++.+.++. .|.++.+|++|+|++|+|++ ++ .|.++.+|++|+|++|+|+ .++..+..+.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34566677777777766655 89999999999999999997 55 8999999999999999999 6677788889
Q ss_pred CCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhc
Q 007628 89 KLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN 168 (595)
Q Consensus 89 ~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~ 168 (595)
+|++|||++|+|++ ++......+|++|+|++|++ ++ +..+
T Consensus 94 ~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i-----------------------~~------------~~~~---- 133 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKI-----------------------TN------------WGEI---- 133 (198)
T ss_dssp HCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEEC-----------------------CC------------HHHH----
T ss_pred cCCEEECcCCcCCc-CCccccCCCCCEEECCCCcC-----------------------Cc------------hhHH----
Confidence 99999999999984 33211113344444443332 21 0000
Q ss_pred cccCCCCCCccCCCccceEEeccCccccCCCCCC----------cCCCCCccEEEccCCcCCC
Q 007628 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSS----------IGNMKSLEQLNVAHNRFTG 221 (595)
Q Consensus 169 N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~----------l~~L~~L~~L~Ls~N~Lsg 221 (595)
..|..+.+|++|+|++|.+++.++.. +..+.+|++|| +|.++.
T Consensus 134 --------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 134 --------DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp --------HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred --------HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 24566888999999999997665543 77888999887 666653
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=2.8e-14 Score=152.83 Aligned_cols=218 Identities=12% Similarity=0.096 Sum_probs=172.2
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
.|+.|+|.+ +|+.+...+|.+|.+|+.|+|.+|+|+.+-..+|. +.+|+.|+|.++ +..+-..+|.+|.+|+.|+|.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 588999986 78877778999999999999999999977777777 689999999855 776777899999999999998
Q ss_pred CCCCCCCCCccccc-cCCCeeeccCCccccCCCccc-CCCCceeEEeeccCCC-----CCcCcccccccchhhHHHhhcc
Q 007628 97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFANNDLG-----GCIPGSIGKMGKTLNEIILMND 169 (595)
Q Consensus 97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~-----~~ip~~l~~l~~~L~~L~Ls~N 169 (595)
+| ++ .|....|. .+|+.|+|.++ ++..-...| .+.+|+.|+|.+|.+. .+....|..+ .+|+.|+|. +
T Consensus 235 ~~-l~-~I~~~aF~~~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c-~~L~~l~l~-~ 309 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRESGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC-PKLARFEIP-E 309 (401)
T ss_dssp TT-CC-EECTTTTTTCCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC-TTCCEECCC-T
T ss_pred CC-cc-CccccccccCCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC-ccCCeEEeC-C
Confidence 75 44 55555555 78999999543 443323333 3468999999988775 2334445555 789999998 4
Q ss_pred ccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC-CCcEEEcccccCC
Q 007628 170 NLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP-NLQNFTYSFNYFT 244 (595)
Q Consensus 170 ~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~-~L~~L~Ls~N~Ls 244 (595)
++..+-..+|.+|.+|+.|+|..| ++..-..+|.+| +|+.|+|++|.+.......|.++. +|+.|.|-.|.+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 576666778999999999999665 665667889999 999999999999877777888884 7899999887653
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=7.9e-17 Score=179.69 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=22.8
Q ss_pred CCCceeEEEccCCC--CCCC-CchhhcCCCCCcEEEccCC
Q 007628 14 SLRVVASIDLNHAD--IAGY-LPPEIGRLTDLAIFHINSN 50 (595)
Q Consensus 14 ~l~~L~~LdLs~n~--i~~~-lp~~~~~L~~L~~L~Ls~N 50 (595)
.+.+|+.|+|++|+ +... +...+.++.+|+.|+|++|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 55678888888876 2211 1112244677888888776
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=2.7e-16 Score=175.33 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=66.3
Q ss_pred CCceeEEEccCCCCCCCCchhhc-CCCCCcEEEccCC-cCCCC-CchhhcCCCCCCEEeccCCcCCCcCchhc----CCC
Q 007628 15 LRVVASIDLNHADIAGYLPPEIG-RLTDLAIFHINSN-RFCGV-VPSTFRRLKLLYEVDLSNNRFVGKFPKLF----LSL 87 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~-~L~~L~~L~Ls~N-~l~~~-lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l----~~L 87 (595)
+.+|+.|+|++|.+++.....+. .+.+|++|+|++| .+++. +...+.++.+|++|+|++|.|++.....+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45677888888877765555554 5778888888877 44432 33444577888888888887765433333 356
Q ss_pred CCCCEEEccCCCCCCCCCcccc------ccCCCeeeccCC
Q 007628 88 PKLKYLDLRFNEFEGSVPSKLF------DKDLDAIFLNDN 121 (595)
Q Consensus 88 ~~L~~LdLs~N~l~g~ip~~l~------~~~L~~L~L~~N 121 (595)
.+|++|+|++|. +.+....+ ..+|++|+|++|
T Consensus 184 ~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 678888888776 12221111 156777777766
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=1.6e-14 Score=135.86 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=92.5
Q ss_pred ceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEcc
Q 007628 136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVA 215 (595)
Q Consensus 136 L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls 215 (595)
.+.|++++|+|+. ++..+. .+|++|+|++|+|++..+..|.+|.+|++|||++|+|++.....|..|.+|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3456777777664 555543 578889999999998888899999999999999999997777778999999999999
Q ss_pred CCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 216 HNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 216 ~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
+|+|++.....|.++.+|++|+|++|.|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998777789999999999999999998754
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=9e-14 Score=130.78 Aligned_cols=105 Identities=25% Similarity=0.361 Sum_probs=86.6
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
..+.||+++|+|+. ++..+ ..+|++|+|++|+|+++.+..|.+|.+|++|+|++|+|+++..+.|.+|.+|++|||+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999999987 55555 3789999999999999989999999999999999999998888888999999999999
Q ss_pred CCCCCCCCCccccc-cCCCeeeccCCccc
Q 007628 97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQ 124 (595)
Q Consensus 97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~ 124 (595)
+|+|++.....+.. .+|++|+|++|.|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999544433322 56666666666655
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=8.3e-14 Score=131.66 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=91.1
Q ss_pred eeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628 137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH 216 (595)
Q Consensus 137 ~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~ 216 (595)
+.|++++|+++ .++..+. .+|++|+|++|+|.+..+..|++|.+|++|+|++|+|++.....|..|.+|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777775 4565554 5788899999999988888999999999999999999976666788999999999999
Q ss_pred CcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628 217 NRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248 (595)
Q Consensus 217 N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p 248 (595)
|+|++.....|.++.+|++|+|++|.|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99997766779999999999999999987654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.1e-13 Score=128.82 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=85.1
Q ss_pred eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628 18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97 (595)
Q Consensus 18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~ 97 (595)
.+.|++++|+|+. ++..+. .+|++|+|++|+|+++.+..|++|.+|++|+|++|+|+++....|.+|.+|++|||++
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3689999999976 555554 7899999999999999899999999999999999999987777789999999999999
Q ss_pred CCCCCCCCccccc-cCCCeeeccCCccc
Q 007628 98 NEFEGSVPSKLFD-KDLDAIFLNDNRFQ 124 (595)
Q Consensus 98 N~l~g~ip~~l~~-~~L~~L~L~~N~l~ 124 (595)
|+|++.....+.. .+|++|+|++|.|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9998543332322 56666666666655
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=2.5e-15 Score=159.40 Aligned_cols=185 Identities=18% Similarity=0.192 Sum_probs=98.2
Q ss_pred CCCCcEEEccCCcCCCCCchhhcC-----CCCCCEEeccCCcCCCcCchhc-CCCCCCCEEEccCCCCCCCCCcccc---
Q 007628 39 LTDLAIFHINSNRFCGVVPSTFRR-----LKLLYEVDLSNNRFVGKFPKLF-LSLPKLKYLDLRFNEFEGSVPSKLF--- 109 (595)
Q Consensus 39 L~~L~~L~Ls~N~l~~~lp~~~~~-----L~~L~~L~Ls~N~Lsg~lp~~l-~~L~~L~~LdLs~N~l~g~ip~~l~--- 109 (595)
+.+|+.|+|++|+|+......|.. ..+|++|+|++|+|+......| ..|.+|++|||++|+|++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 345667777777766543333322 2567777777776653322222 2345667777777776533222221
Q ss_pred ---ccCCCeeeccCCccccCCCcc----c-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCC
Q 007628 110 ---DKDLDAIFLNDNRFQFGIPEN----L-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181 (595)
Q Consensus 110 ---~~~L~~L~L~~N~l~~~~p~~----l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~ 181 (595)
..+|+.|+|++|+++...... + .+..|++|+|++|.|+... ++. +.+.|..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g----------~~~-----------L~~~L~~ 209 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG----------LEL-----------LAAQLDR 209 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH----------HHH-----------HHHHGGG
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH----------HHH-----------HHHHHhc
Confidence 145677777777665321111 1 2345667777777665311 111 1123445
Q ss_pred CccceEEeccCccccCC----CCCCcCCCCCccEEEccCCcCCCCCchhccCC---C--CCcEEE--cccccCC
Q 007628 182 LKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL---P--NLQNFT--YSFNYFT 244 (595)
Q Consensus 182 L~~L~~LdLs~N~L~g~----lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l---~--~L~~L~--Ls~N~Ls 244 (595)
+.+|++|||++|.|++. +.+.+..+.+|++|||++|.|++.-...|..+ . .|+.+. +..|.++
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 56788888888888642 33344556788888888888875433334332 1 156665 5555554
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=7.6e-13 Score=137.97 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=88.1
Q ss_pred eEEEccCC-CCCCCCchhhcCCCCCcEEEccC-CcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628 19 ASIDLNHA-DIAGYLPPEIGRLTDLAIFHINS-NRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96 (595)
Q Consensus 19 ~~LdLs~n-~i~~~lp~~~~~L~~L~~L~Ls~-N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs 96 (595)
..++++++ +|++ ++. |..+.+|++|+|++ |+|+++....|++|.+|++|+|++|+|+++.+..|.+|.+|++|||+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 7887 677 99999999999996 99998888899999999999999999999888899999999999999
Q ss_pred CCCCCCCCCccccccCCCeeeccCCcccc
Q 007628 97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQF 125 (595)
Q Consensus 97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~ 125 (595)
+|+|++.....+....|+.|+|.+|.|..
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccC
Confidence 99998544433333558888888888764
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=7.1e-15 Score=155.95 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=110.1
Q ss_pred CCCCCEEeccCCcCCCcCchh----cC-CCCCCCEEEccCCCCCCCCCccccc--cCCCeeeccCCccccCCCccc----
Q 007628 63 LKLLYEVDLSNNRFVGKFPKL----FL-SLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENL---- 131 (595)
Q Consensus 63 L~~L~~L~Ls~N~Lsg~lp~~----l~-~L~~L~~LdLs~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l---- 131 (595)
+.+|++|+|++|+|+...... +. +..+|++|||++|.|++.....++. .+|+.|+|++|++.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 477999999999998543333 33 2378999999999987432222322 467777777777653322222
Q ss_pred --CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCC----CCCCcCC
Q 007628 132 --GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGS----LPSSIGN 205 (595)
Q Consensus 132 --~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l~~ 205 (595)
....|++|+|++|.|+... ++ .+...+..+.+|++|||++|.|++. +.+.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~----------~~-----------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAG----------VA-----------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHH----------HH-----------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred HhcCCccceeeCCCCCCChHH----------HH-----------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 1345666666666654211 11 1122345567899999999999743 3556777
Q ss_pred CCCccEEEccCCcCCCC----CchhccCCCCCcEEEcccccCCCC
Q 007628 206 MKSLEQLNVAHNRFTGV----IPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 206 L~~L~~L~Ls~N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+.+|++|+|++|.|++. +...+..+.+|++|||++|.|++.
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 88999999999999853 445566678999999999998754
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=2.3e-12 Score=134.25 Aligned_cols=92 Identities=20% Similarity=0.158 Sum_probs=83.5
Q ss_pred CCCCCceeEEEccC-CCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628 12 SPSLRVVASIDLNH-ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90 (595)
Q Consensus 12 ~~~l~~L~~LdLs~-n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L 90 (595)
+..+.+|+.|+|++ |+|+++....|++|.+|++|+|++|+|+++.+..|.+|.+|++|+|++|+|+++....|..+. |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 45677899999996 999999889999999999999999999999999999999999999999999977777777776 9
Q ss_pred CEEEccCCCCCCCC
Q 007628 91 KYLDLRFNEFEGSV 104 (595)
Q Consensus 91 ~~LdLs~N~l~g~i 104 (595)
++|+|.+|.|...-
T Consensus 106 ~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 106 QELVLSGNPLHCSC 119 (347)
T ss_dssp CEEECCSSCCCCCG
T ss_pred eEEEeeCCCccCCC
Confidence 99999999998543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.18 E-value=9e-12 Score=131.51 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=29.5
Q ss_pred CccceEEeccCccccCC----CCCCcCCCCCccEEEccCCcCCCCCchhccC-CCCCcEEEccccc
Q 007628 182 LKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ-LPNLQNFTYSFNY 242 (595)
Q Consensus 182 L~~L~~LdLs~N~L~g~----lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~-l~~L~~L~Ls~N~ 242 (595)
|.+|++|||++|.|++. +...+..+.+|++|+|++|.|++..-..|.. + ...++|++|+
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 45566666666665532 2233344556666666666655433333332 2 2345555554
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=3.4e-10 Score=120.37 Aligned_cols=203 Identities=13% Similarity=0.101 Sum_probs=112.8
Q ss_pred CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCcccc-c
Q 007628 32 LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLF-D 110 (595)
Q Consensus 32 lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~-~ 110 (595)
...+|.++.+|+.++|.++. ..+...+|.++.+|+.++|.+| ++.+...+|.++..|+.+++.++... +....+ .
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~ 229 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK 229 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred chhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc
Confidence 34567788888888886553 3355667788888888888766 44455567777777777777655432 111111 2
Q ss_pred cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCC-------------------CCcCcccccccchhhHHHhhcccc
Q 007628 111 KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLG-------------------GCIPGSIGKMGKTLNEIILMNDNL 171 (595)
Q Consensus 111 ~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~-------------------~~ip~~l~~l~~~L~~L~Ls~N~l 171 (595)
..|+.+.+..+......-.+.....++.+.+.++... ..+.+..+....+|+.+.+.++ +
T Consensus 230 ~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 230 TGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp CCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-C
T ss_pred CCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-c
Confidence 4455555443221111111112233333333322111 0111112222255666665443 4
Q ss_pred CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccc
Q 007628 172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241 (595)
Q Consensus 172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N 241 (595)
..+-..+|.+|.+|+.|+|.++ ++..-..+|.+|.+|+.++|..| ++..-..+|.+|.+|+.++|..|
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 4344456777778888877644 55444567777788888887666 55444567777778888877654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=8.8e-10 Score=117.11 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=50.0
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCc---CCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNR---FCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~---l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L 93 (595)
.|+.+.|-++ |+.+-..+|.++.+|+.+.|.+|. |+.+-..+|.++.+|+.+.+.++ ++.+...+|.++.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4777777643 666667788888888888887664 55445556666666666666544 332334455555666666
Q ss_pred Ecc
Q 007628 94 DLR 96 (595)
Q Consensus 94 dLs 96 (595)
+|.
T Consensus 143 ~lp 145 (394)
T 4gt6_A 143 TIP 145 (394)
T ss_dssp ECC
T ss_pred ccc
Confidence 554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=6.9e-11 Score=124.71 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=50.9
Q ss_pred CCccceEEeccCccccCCCCCCc---CCCCCccEEEccCCcCCCC----CchhccCCCCCcEEEcccccCCCC
Q 007628 181 MLKNLTVFDVSFNHLQGSLPSSI---GNMKSLEQLNVAHNRFTGV----IPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 181 ~L~~L~~LdLs~N~L~g~lP~~l---~~L~~L~~L~Ls~N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
.+.+|++|+|++|.+.+.....+ ..+.+|++|+|++|+|++. +...+..+.+|+.|+|++|.|+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 47899999999999874332233 3578999999999999864 333445678999999999988754
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.95 E-value=2e-09 Score=114.33 Aligned_cols=201 Identities=13% Similarity=0.041 Sum_probs=120.7
Q ss_pred CCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc
Q 007628 31 YLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD 110 (595)
Q Consensus 31 ~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 110 (595)
+...+|.++..++.+...+. ..+...+|.++.+|+.++|.++. ..+...+|.++.+|+.++|.+| ++ .|....+.
T Consensus 131 i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~ 205 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFA 205 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTT
T ss_pred ecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhc
Confidence 33455666654444443333 22445689999999999998764 3356678999999999999876 44 45555554
Q ss_pred --cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC----------------
Q 007628 111 --KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT---------------- 172 (595)
Q Consensus 111 --~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~---------------- 172 (595)
..|+.+.+..+.... ....+....|+.+.+.++. +......+..+ ..|+.+.+.++...
T Consensus 206 ~~~~L~~i~~~~~~~~i-~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~-~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 206 ECILLENMEFPNSLYYL-GDFALSKTGVKNIIIPDSF-TELGKSVFYGC-TDLESISIQNNKLRIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TCTTCCBCCCCTTCCEE-CTTTTTTCCCCEEEECTTC-CEECSSTTTTC-SSCCEEEECCTTCEECSCTTTTCTTCCEEE
T ss_pred cccccceeecCCCceEe-ehhhcccCCCceEEECCCc-eeccccccccc-ccceeEEcCCCcceeeccccccccccceec
Confidence 678888877665431 2233445678877775432 21222222222 34444444333211
Q ss_pred ----CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccc
Q 007628 173 ----GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241 (595)
Q Consensus 173 ----g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N 241 (595)
.+....|..+.+|+.++|.++ ++..-..+|.+|.+|+.|+|.++ ++..-..+|.+|.+|+.++|..|
T Consensus 283 ~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 283 YGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp ECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 011234556677777777654 44344566777888888888644 55344567778888888877655
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.87 E-value=1.3e-08 Score=107.98 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=76.2
Q ss_pred CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEE
Q 007628 134 SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLN 213 (595)
Q Consensus 134 ~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~ 213 (595)
..|+.+.+.++.. .+....|.++ ..|+.+.+. +.+..+-..+|.+|.+|+.|+|..+ ++..-..+|.+|.+|++|.
T Consensus 265 ~~L~~i~lp~~~~-~I~~~aF~~c-~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 265 AYLASVKMPDSVV-SIGTGAFMNC-PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp SSCCEEECCTTCC-EECTTTTTTC-TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccEEecccccc-eecCcccccc-cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 4567777654432 2333444444 678888775 4455455678999999999999865 5545567899999999999
Q ss_pred ccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628 214 VAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243 (595)
Q Consensus 214 Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L 243 (595)
|..+ ++..-..+|.+|.+|+.++|.+|..
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 9755 6645567899999999999998764
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=2.6e-08 Score=104.82 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=57.8
Q ss_pred CceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEc
Q 007628 135 PVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV 214 (595)
Q Consensus 135 ~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~L 214 (595)
.|+.+.+..+ ++......+..+ ..|+.+.+.++ ++.+-..+|.++.+|+.++|..+ ++..-..+|.+|.+|+.++|
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred ccceeeeccc-eeEEccccccCC-ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 4555555432 222223333333 45666665543 33333455666777777777543 33344456677777777777
Q ss_pred cCCcCCCCCchhccCCCCCcEEEcccc
Q 007628 215 AHNRFTGVIPSSVCQLPNLQNFTYSFN 241 (595)
Q Consensus 215 s~N~Lsg~iP~~l~~l~~L~~L~Ls~N 241 (595)
.+|.++..-...|.+|.+|+.++|..+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc
Confidence 776666444566777777777777543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=2.1e-08 Score=105.50 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=115.9
Q ss_pred CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628 15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94 (595)
Q Consensus 15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld 94 (595)
..+|+.+.|.+ +|+.+-..+|.+|.+|+.++|.++ |+.+-..+|.++ +|+.+.+.++ +..+-..+|.++ +|+.++
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence 34677777764 466666677888888888888654 665666777777 5777777654 443444556554 688888
Q ss_pred ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCC--------------------------
Q 007628 95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLG-------------------------- 147 (595)
Q Consensus 95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~-------------------------- 147 (595)
|.++.. .+....|. .+|+.+.+..+.-......+.....++.+.+..+...
T Consensus 120 lp~~~~--~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 120 FPGATT--EIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CCTTCC--EECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCCccc--cccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 765422 22222222 3344443332211111111111122222222111100
Q ss_pred ---------CCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCc
Q 007628 148 ---------GCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR 218 (595)
Q Consensus 148 ---------~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~ 218 (595)
......+... ..|+.+.+..+ +..+...+|.++.+|+.++|..+ ++..-..+|.++.+|+.++|..+
T Consensus 198 ~~~~~~~~~~i~~~~f~~~-~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 198 EFTIPSTVKTVTAYGFSYG-KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp EEECCTTCCEECTTTTTTC-SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred ccccccceeEEeecccccc-cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence 0000111111 23333333222 22233455667778888888665 44344566777888888887654
Q ss_pred CCCCCchhccCCCCCcEEEcccccCC
Q 007628 219 FTGVIPSSVCQLPNLQNFTYSFNYFT 244 (595)
Q Consensus 219 Lsg~iP~~l~~l~~L~~L~Ls~N~Ls 244 (595)
++..-...|.++.+|+.++|.+|.++
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~ 299 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIE 299 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred ceeccccccccccccccccccccccc
Confidence 44344456777888888888776654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=2.8e-09 Score=101.43 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=80.4
Q ss_pred CCCCCchhhcCCCCCcEEEccCC-cCCCC----CchhhcCCCCCCEEeccCCcCCCc----CchhcCCCCCCCEEEccCC
Q 007628 28 IAGYLPPEIGRLTDLAIFHINSN-RFCGV----VPSTFRRLKLLYEVDLSNNRFVGK----FPKLFLSLPKLKYLDLRFN 98 (595)
Q Consensus 28 i~~~lp~~~~~L~~L~~L~Ls~N-~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~----lp~~l~~L~~L~~LdLs~N 98 (595)
+...+...+.....|++|+|++| .|... +...|....+|++|+|++|+|... +...|....+|++|||++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 33334556677888888888888 77643 445566778888888888888632 3445556678888888888
Q ss_pred CCCCCCC----ccccc-cCCCeeec--cCCccccCCCccc-----CCCCceeEEeeccCCC
Q 007628 99 EFEGSVP----SKLFD-KDLDAIFL--NDNRFQFGIPENL-----GNSPVSVLVFANNDLG 147 (595)
Q Consensus 99 ~l~g~ip----~~l~~-~~L~~L~L--~~N~l~~~~p~~l-----~~~~L~~L~L~~N~l~ 147 (595)
.|++..- ..+.. ..|++|+| ++|.+.......+ .+..|++|+|++|.|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 8874322 22222 57888888 7788764322222 2367899999998875
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=1.6e-09 Score=103.20 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=58.9
Q ss_pred CCceeEEEccCC-CCCCC----CchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCc----Cc
Q 007628 15 LRVVASIDLNHA-DIAGY----LPPEIGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGK----FP 81 (595)
Q Consensus 15 l~~L~~LdLs~n-~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~----lp 81 (595)
...|+.|+|++| +|... +.+.+....+|++|+|++|+|.+. +.+.|....+|++|+|++|+|... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 345666666666 55432 233344556666666666666542 233344556666666666666532 33
Q ss_pred hhcCCCCCCCEEEc--cCCCCCCCCCccccc-----cCCCeeeccCCccc
Q 007628 82 KLFLSLPKLKYLDL--RFNEFEGSVPSKLFD-----KDLDAIFLNDNRFQ 124 (595)
Q Consensus 82 ~~l~~L~~L~~LdL--s~N~l~g~ip~~l~~-----~~L~~L~L~~N~l~ 124 (595)
..+....+|++||| ++|.|+...-..+.. ..|++|+|++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44555566666666 556665322211111 45666666666653
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=4.3e-08 Score=98.82 Aligned_cols=40 Identities=33% Similarity=0.496 Sum_probs=18.6
Q ss_pred CCCCCCEEeccCCcCCC--cCchhcCCCCCCCEEEccCCCCC
Q 007628 62 RLKLLYEVDLSNNRFVG--KFPKLFLSLPKLKYLDLRFNEFE 101 (595)
Q Consensus 62 ~L~~L~~L~Ls~N~Lsg--~lp~~l~~L~~L~~LdLs~N~l~ 101 (595)
+|.+|+.|+|++|+|++ .++..+..|.+|++|||++|+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34445555555555544 22233344445555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=1.6e-07 Score=94.55 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=62.9
Q ss_pred EEccCCCCC---CCCchhhcCCCCCcEEEccCCcCCC--CCchhhcCCCCCCEEeccCCcCCCcCchhcCCCC--CCCEE
Q 007628 21 IDLNHADIA---GYLPPEIGRLTDLAIFHINSNRFCG--VVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLP--KLKYL 93 (595)
Q Consensus 21 LdLs~n~i~---~~lp~~~~~L~~L~~L~Ls~N~l~~--~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~--~L~~L 93 (595)
|+++.|.+. ..+.....++.+|+.|+|++|+|++ .+...+..|.+|+.|+|++|+|++. ..+..|. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 566666432 2222233568899999999999998 3457788999999999999999975 3344444 99999
Q ss_pred EccCCCCCCCCC
Q 007628 94 DLRFNEFEGSVP 105 (595)
Q Consensus 94 dLs~N~l~g~ip 105 (595)
+|++|.|.+.++
T Consensus 226 ~L~~Npl~~~~~ 237 (267)
T 3rw6_A 226 WLDGNSLCDTFR 237 (267)
T ss_dssp ECTTSTTGGGCS
T ss_pred EccCCcCccccC
Confidence 999999987665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=7.7e-07 Score=83.85 Aligned_cols=83 Identities=16% Similarity=0.088 Sum_probs=49.3
Q ss_pred ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCc-CCCCCchhhcCC----CCCCEEeccCCc-CCCcCchhcCCCCCC
Q 007628 17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNR-FCGVVPSTFRRL----KLLYEVDLSNNR-FVGKFPKLFLSLPKL 90 (595)
Q Consensus 17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~-l~~~lp~~~~~L----~~L~~L~Ls~N~-Lsg~lp~~l~~L~~L 90 (595)
.|+.|||+++.|+..--..+.+|.+|+.|+|++|. |++.--..|..+ .+|++|+|++|. |+..--..|.+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46777777776665544556666677777777764 554444445543 256777776653 553333445566667
Q ss_pred CEEEccCCC
Q 007628 91 KYLDLRFNE 99 (595)
Q Consensus 91 ~~LdLs~N~ 99 (595)
++|+|+++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777776653
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.95 E-value=2.6e-06 Score=81.62 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=72.5
Q ss_pred hhhcCCCCCcEEEccCC-cCCCC----CchhhcCCCCCCEEeccCCcCCC----cCchhcCCCCCCCEEEccCCCCCCCC
Q 007628 34 PEIGRLTDLAIFHINSN-RFCGV----VPSTFRRLKLLYEVDLSNNRFVG----KFPKLFLSLPKLKYLDLRFNEFEGSV 104 (595)
Q Consensus 34 ~~~~~L~~L~~L~Ls~N-~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg----~lp~~l~~L~~L~~LdLs~N~l~g~i 104 (595)
..+.+-..|++|+|++| +|.+. +-+.|...+.|+.|+|++|+|.. .+-+.|..-+.|++|||++|.|++..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33455667888888875 76542 45566777888888888888873 23445556677888888888887543
Q ss_pred Cccccc-----cCCCeeeccCCcc---ccC----CCccc-CCCCceeEEeeccCCC
Q 007628 105 PSKLFD-----KDLDAIFLNDNRF---QFG----IPENL-GNSPVSVLVFANNDLG 147 (595)
Q Consensus 105 p~~l~~-----~~L~~L~L~~N~l---~~~----~p~~l-~~~~L~~L~L~~N~l~ 147 (595)
-..+.. ..|+.|+|++|+. ... +.+.+ .+..|+.|+|..|.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 333322 4688888875432 211 11222 2367888888777654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.80 E-value=1.3e-06 Score=83.75 Aligned_cols=42 Identities=7% Similarity=0.091 Sum_probs=18.0
Q ss_pred hcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCC
Q 007628 36 IGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFV 77 (595)
Q Consensus 36 ~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Ls 77 (595)
+..-+.|+.|+|++|+|.+. +.+.|...+.|++|+|++|+|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33334444444444444421 2223333444444444444444
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=1.1e-05 Score=75.97 Aligned_cols=62 Identities=5% Similarity=0.039 Sum_probs=45.9
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-CCCcCchhcCCC----CCCCEEEccCCC-CC
Q 007628 40 TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-FVGKFPKLFLSL----PKLKYLDLRFNE-FE 101 (595)
Q Consensus 40 ~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-Lsg~lp~~l~~L----~~L~~LdLs~N~-l~ 101 (595)
-+|+.|||+++.|++.--..|.+|.+|+.|+|++|. |+..--..|..+ .+|++|||++|. |+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 468899999998887766778888999999998885 664333445554 368888888874 65
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.33 E-value=0.00021 Score=63.71 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=37.1
Q ss_pred EEeccCcccc-CCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCC
Q 007628 187 VFDVSFNHLQ-GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG 245 (595)
Q Consensus 187 ~LdLs~N~L~-g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg 245 (595)
.+|.++++|+ ..++..|- .+|++|+|++|+|+.+-.+.|..+.+|++|+|++|.|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5667777665 34554432 356777777777776555667777777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00033 Score=62.36 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=26.1
Q ss_pred EEEccCCCCC-CCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcC
Q 007628 20 SIDLNHADIA-GYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF 76 (595)
Q Consensus 20 ~LdLs~n~i~-~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~L 76 (595)
++|.++++++ ..++..|. .+|++|+|++|+|+.+-...|..|.+|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666655 12332221 2345555555555544444444455555555544443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.16 E-value=0.66 Score=38.83 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=28.9
Q ss_pred CCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCC
Q 007628 26 ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN 74 (595)
Q Consensus 26 n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N 74 (595)
..|+.+...+|.++.+|+.+.|-.+ ++.+-..+|.+|.+|+.+.|.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555566666667776666554 33345556666666666666554
No 166
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=88.70 E-value=0.32 Score=46.13 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=4.1
Q ss_pred EEcccccCCC
Q 007628 236 FTYSFNYFTG 245 (595)
Q Consensus 236 L~Ls~N~Lsg 245 (595)
.++++..|.|
T Consensus 186 ~~l~~~~l~g 195 (216)
T 3pss_A 186 LDLRRVNLDG 195 (216)
T ss_dssp CCTTTSCCTT
T ss_pred cccccCcccC
Confidence 3344444444
No 167
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=87.27 E-value=0.34 Score=45.97 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=4.8
Q ss_pred EEccCCcCCCC
Q 007628 212 LNVAHNRFTGV 222 (595)
Q Consensus 212 L~Ls~N~Lsg~ 222 (595)
.+|.+..|.|.
T Consensus 180 a~l~~a~l~ga 190 (201)
T 2j8k_A 180 ANLEDANLEGT 190 (201)
T ss_dssp CBCTTCBCTTS
T ss_pred CCcCCCEECcC
Confidence 34444444443
No 168
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=85.82 E-value=0.5 Score=44.21 Aligned_cols=12 Identities=0% Similarity=-0.189 Sum_probs=5.2
Q ss_pred CCEEEccCCCCC
Q 007628 90 LKYLDLRFNEFE 101 (595)
Q Consensus 90 L~~LdLs~N~l~ 101 (595)
|+..++.+++|.
T Consensus 71 l~~~~f~~~~l~ 82 (200)
T 2xt2_A 71 FMEVRFVDCKML 82 (200)
T ss_dssp EEEEEEESCBCT
T ss_pred eeeeEEEcCEec
Confidence 344444444444
No 169
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=83.76 E-value=1.5 Score=41.60 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=25.7
Q ss_pred cceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246 (595)
Q Consensus 184 ~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~ 246 (595)
+|+..++.++.|.+.. |. -.+|+..++.++.|++.. |.+ .+|+..+|++..|++.
T Consensus 131 ~l~~~~f~~~~l~~a~---f~-~a~L~~a~f~~~~L~~a~---f~~-a~l~~~~l~~a~l~~~ 185 (214)
T 2w7z_A 131 NFNLVHFNQTRLVESE---FF-EVTWXXLLLEACDLTESN---WLN-TSLXGLDFSQNTFERL 185 (214)
T ss_dssp EEEEEEEESCBCTTCB---CT-TCEEEEEEEESCBCTTCB---CTT-CCCTTCBCTTSBCSCC
T ss_pred ccCceEEEecccCCCC---cc-CCEEEEEEEEecccccCE---ecC-CeeccCCcccCCcCce
Confidence 3555555555554321 11 134555666666655421 211 2355555555555543
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.67 E-value=2.2 Score=35.61 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=33.1
Q ss_pred ccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCc
Q 007628 170 NLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR 218 (595)
Q Consensus 170 ~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~ 218 (595)
.++.+-..+|.+|.+|+.+.|-.+- +..-..+|.+|.+|+.+.|....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCCC
Confidence 3444555677888888888887653 33556678888888888887643
No 171
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=75.48 E-value=3.5 Score=38.93 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=25.1
Q ss_pred CCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCC
Q 007628 89 KLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGG 148 (595)
Q Consensus 89 ~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~ 148 (595)
+|+..++.++.|.|. .+....|+...+.++++.+ ..+....|+...+.++.|.+
T Consensus 91 ~l~~~~f~~~~l~~a---~f~~a~l~~~~f~~~~l~~---a~f~~a~l~~~~f~~~~l~~ 144 (214)
T 2w7z_A 91 SFHRVTFLRCNLTGT---NFADSYLXDCLFEDCXADY---ASFRFANFNLVHFNQTRLVE 144 (214)
T ss_dssp EEEEEEEESCBCTTC---BCTTCEEEEEEEESCBCTT---CBCTTCEEEEEEEESCBCTT
T ss_pred EEEeeEEeCCeeeCC---CcCCCEeeeeEEeCCCCCC---CcCCcCccCceEEEecccCC
Confidence 355556666665532 1112334444444444442 12333445555666655553
No 172
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=75.10 E-value=1.9 Score=40.14 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=5.1
Q ss_pred CCEEeccCCcCC
Q 007628 66 LYEVDLSNNRFV 77 (595)
Q Consensus 66 L~~L~Ls~N~Ls 77 (595)
|+..++.+++|.
T Consensus 71 l~~~~f~~~~l~ 82 (200)
T 2xt2_A 71 FMEVRFVDCKML 82 (200)
T ss_dssp EEEEEEESCBCT
T ss_pred eeeeEEEcCEec
Confidence 333444444444
No 173
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=73.13 E-value=2.7 Score=39.77 Aligned_cols=9 Identities=11% Similarity=-0.090 Sum_probs=3.9
Q ss_pred EcccccCCC
Q 007628 237 TYSFNYFTG 245 (595)
Q Consensus 237 ~Ls~N~Lsg 245 (595)
+|++..|.|
T Consensus 188 ~l~~a~l~g 196 (217)
T 2xty_A 188 DIRGVDLQG 196 (217)
T ss_dssp CTTTSCCTT
T ss_pred cCCCCccCc
Confidence 344444444
No 174
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=69.36 E-value=3.4 Score=45.67 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=7.5
Q ss_pred CccEEEccCCcCCC
Q 007628 208 SLEQLNVAHNRFTG 221 (595)
Q Consensus 208 ~L~~L~Ls~N~Lsg 221 (595)
.++..+|.++.|.+
T Consensus 161 ~l~~i~L~Ga~I~~ 174 (613)
T 3nb2_A 161 KSNTINLGGCYIDL 174 (613)
T ss_dssp STTEEEETTEEEEC
T ss_pred ccceeeecCcEEec
Confidence 45555555555543
No 175
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=63.50 E-value=5.5 Score=44.05 Aligned_cols=13 Identities=0% Similarity=-0.020 Sum_probs=7.9
Q ss_pred cceEEeccCcccc
Q 007628 184 NLTVFDVSFNHLQ 196 (595)
Q Consensus 184 ~L~~LdLs~N~L~ 196 (595)
.+...+|.++.|.
T Consensus 161 ~l~~i~L~Ga~I~ 173 (613)
T 3nb2_A 161 KSNTINLGGCYID 173 (613)
T ss_dssp STTEEEETTEEEE
T ss_pred ccceeeecCcEEe
Confidence 4556666666665
No 176
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=53.93 E-value=3 Score=38.52 Aligned_cols=9 Identities=11% Similarity=0.062 Sum_probs=3.7
Q ss_pred EccCCcCCC
Q 007628 213 NVAHNRFTG 221 (595)
Q Consensus 213 ~Ls~N~Lsg 221 (595)
++.+..|.|
T Consensus 156 ~~~~a~l~g 164 (186)
T 2bm5_A 156 LWRTASLVG 164 (186)
T ss_dssp HHHHSBCTT
T ss_pred ccccCeecc
Confidence 334444443
No 177
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=45.64 E-value=2.3 Score=39.24 Aligned_cols=9 Identities=11% Similarity=0.253 Sum_probs=3.8
Q ss_pred EcccccCCC
Q 007628 237 TYSFNYFTG 245 (595)
Q Consensus 237 ~Ls~N~Lsg 245 (595)
++.+..|.|
T Consensus 156 ~~~~a~l~g 164 (186)
T 2bm5_A 156 LWRTASLVG 164 (186)
T ss_dssp HHHHSBCTT
T ss_pred ccccCeecc
Confidence 344444444
No 178
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=40.03 E-value=23 Score=32.64 Aligned_cols=7 Identities=0% Similarity=-0.273 Sum_probs=2.6
Q ss_pred EEccCCC
Q 007628 93 LDLRFNE 99 (595)
Q Consensus 93 LdLs~N~ 99 (595)
+++++..
T Consensus 52 ~~f~~~~ 58 (184)
T 2f3l_A 52 ASYEDVK 58 (184)
T ss_dssp CEEESCB
T ss_pred ccccCCe
Confidence 3333333
No 179
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=38.79 E-value=13 Score=34.34 Aligned_cols=10 Identities=0% Similarity=0.295 Sum_probs=3.6
Q ss_pred EEeccCCcCC
Q 007628 68 EVDLSNNRFV 77 (595)
Q Consensus 68 ~L~Ls~N~Ls 77 (595)
.+++.+..|.
T Consensus 51 ~~~f~~~~l~ 60 (184)
T 2f3l_A 51 SASYEDVKLI 60 (184)
T ss_dssp -CEEESCBCT
T ss_pred CccccCCeEC
Confidence 3344444333
No 180
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=27.50 E-value=36 Score=37.38 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCC--CCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeee
Q 007628 40 TDLAIFHINSNRFCGVVPSTFRRLK--LLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF 117 (595)
Q Consensus 40 ~~L~~L~Ls~N~l~~~lp~~~~~L~--~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~ 117 (595)
.++...||++.++.+.+..++.++. +|+..+|++..|++ ..|+..+|.+++|.+ ..+....|+..+
T Consensus 40 rDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~---------AdLs~A~L~gAnLs~---AnLsgA~L~~An 107 (627)
T 2qyu_A 40 RDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTY---------SDISHLHFDECRFTY---STLSDVVCSNTK 107 (627)
T ss_dssp TBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTT---------CBCTTCEEESCBCTT---CBCTTCBCTTCE
T ss_pred CcCCCCCCCCCccccccccccccccCCccCCCccCCCccCC---------CCCCCCccCCcccCC---Cchhhhccccce
Q ss_pred ccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchh-hHHHhhccccCCCCC-CccCCCccceEEeccCccc
Q 007628 118 LNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTL-NEIILMNDNLTGCLP-PQIGMLKNLTVFDVSFNHL 195 (595)
Q Consensus 118 L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L-~~L~Ls~N~l~g~ip-~~~~~L~~L~~LdLs~N~L 195 (595)
|.+.+|++..-....... ..-+|.+..|++ ..| +..+|.+..+.+..- ..+.-.-+-+.+.|..+.|
T Consensus 108 LsgAnLsgAnL~gA~L~~-~gAnLsgAdL~g----------A~L~~gAdLsGA~L~~ad~~~~~~~~~~~~~~~~~~~~L 176 (627)
T 2qyu_A 108 FSNSDMNEVFLQYSITTQ-QQPSFIDTTLKN----------TLIRHKANLSGVILNEPDNSSPPSVSGGGNFIRLGDIWL 176 (627)
T ss_dssp EESCBCTTCEECCCTTCC-SCCEEEEEECTT----------CEECSCCEEEEEECCCCCSCCCCCCSSCCCEEEETTEEE
T ss_pred ECCcCCCCcccCCccccC-CCCeeCCCCCCC----------CccccCccCCCCcCCCCccccCceEEeccCeeEEeeEEE
Q ss_pred cCCCCCCcC
Q 007628 196 QGSLPSSIG 204 (595)
Q Consensus 196 ~g~lP~~l~ 204 (595)
. ++..+.
T Consensus 177 ~--lp~~w~ 183 (627)
T 2qyu_A 177 Q--MPLLWT 183 (627)
T ss_dssp E--CCSSCC
T ss_pred e--CCCccC
Done!