Query 007631
Match_columns 595
No_of_seqs 359 out of 1807
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 13:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2263 Methionine synthase II 100.0 6E-167 1E-171 1289.1 47.3 588 1-590 2-590 (765)
2 PLN02475 5-methyltetrahydropte 100.0 1E-158 2E-163 1350.3 63.6 587 1-591 1-591 (766)
3 PRK05222 5-methyltetrahydropte 100.0 9E-153 2E-157 1308.5 63.0 583 1-591 2-586 (758)
4 TIGR01371 met_syn_B12ind 5-met 100.0 2E-150 5E-155 1287.6 62.4 578 6-591 1-580 (750)
5 cd03312 CIMS_N_terminal_like C 100.0 9.5E-99 2E-103 800.0 38.1 360 2-367 1-360 (360)
6 PF08267 Meth_synt_1: Cobalami 100.0 1.4E-92 3E-97 732.3 27.7 308 2-316 1-309 (310)
7 PRK08575 5-methyltetrahydropte 100.0 1.3E-65 2.8E-70 540.0 35.2 308 2-366 5-321 (326)
8 TIGR01371 met_syn_B12ind 5-met 100.0 7.8E-53 1.7E-57 483.2 33.7 314 2-369 424-748 (750)
9 PRK09121 5-methyltetrahydropte 100.0 7.3E-50 1.6E-54 422.1 33.3 313 2-369 5-335 (339)
10 PRK04326 methionine synthase; 100.0 9.2E-50 2E-54 421.0 32.3 309 2-369 10-323 (330)
11 cd03310 CIMS_like CIMS - Cobal 100.0 5.3E-49 1.1E-53 413.1 25.5 307 1-366 1-320 (321)
12 PRK05222 5-methyltetrahydropte 100.0 8.2E-48 1.8E-52 442.1 33.9 315 2-369 430-753 (758)
13 PRK06520 5-methyltetrahydropte 100.0 2.5E-47 5.5E-52 406.9 31.0 322 2-367 10-366 (368)
14 PRK06233 hypothetical protein; 100.0 6.6E-46 1.4E-50 396.8 30.8 323 3-367 12-369 (372)
15 cd03311 CIMS_C_terminal_like C 100.0 2.8E-46 6.2E-51 394.7 25.7 311 2-366 2-331 (332)
16 PLN02475 5-methyltetrahydropte 100.0 2.2E-45 4.7E-50 420.1 34.5 316 2-369 435-759 (766)
17 COG0620 MetE Methionine syntha 100.0 5.6E-45 1.2E-49 381.6 31.5 315 2-369 7-328 (330)
18 PRK01207 methionine synthase; 100.0 3.4E-43 7.5E-48 367.6 32.1 306 2-369 6-340 (343)
19 PF01717 Meth_synt_2: Cobalami 100.0 9.1E-43 2E-47 367.0 27.3 311 2-366 3-323 (324)
20 COG0620 MetE Methionine syntha 100.0 3.5E-43 7.5E-48 368.1 15.6 163 428-591 1-163 (330)
21 PRK00957 methionine synthase; 100.0 1.5E-40 3.2E-45 347.4 30.3 294 2-367 4-303 (305)
22 PRK01207 methionine synthase; 100.0 1.7E-39 3.8E-44 339.7 17.2 153 431-590 3-156 (343)
23 PRK06438 hypothetical protein; 100.0 6.2E-38 1.3E-42 317.4 24.0 266 2-336 3-278 (292)
24 PRK09121 5-methyltetrahydropte 100.0 3.5E-37 7.6E-42 325.7 17.6 159 431-591 2-161 (339)
25 PRK06052 5-methyltetrahydropte 100.0 1.1E-32 2.5E-37 284.3 24.8 295 3-369 7-341 (344)
26 PF01717 Meth_synt_2: Cobalami 100.0 6.6E-34 1.4E-38 299.7 13.6 159 432-591 1-159 (324)
27 PRK06233 hypothetical protein; 100.0 3.9E-32 8.4E-37 290.8 15.7 159 430-591 7-176 (372)
28 PRK06520 5-methyltetrahydropte 100.0 4.8E-32 1E-36 289.6 16.2 162 429-591 5-175 (368)
29 PRK08575 5-methyltetrahydropte 100.0 1.1E-30 2.4E-35 275.2 16.1 158 431-591 2-166 (326)
30 cd03311 CIMS_C_terminal_like C 100.0 3.8E-31 8.3E-36 279.5 8.1 156 433-591 1-160 (332)
31 PRK04326 methionine synthase; 100.0 1.4E-29 2.9E-34 267.5 17.1 163 426-591 3-166 (330)
32 KOG2263 Methionine synthase II 100.0 1.7E-28 3.7E-33 256.6 20.3 313 2-355 435-756 (765)
33 PRK00957 methionine synthase; 99.9 4.9E-25 1.1E-29 230.5 14.0 139 432-591 2-149 (305)
34 PRK06438 hypothetical protein; 99.9 1E-23 2.2E-28 214.1 14.4 154 432-590 2-163 (292)
35 cd03312 CIMS_N_terminal_like C 99.9 3.4E-23 7.3E-28 221.0 15.2 155 434-591 2-187 (360)
36 cd03310 CIMS_like CIMS - Cobal 99.8 2.2E-20 4.7E-25 196.4 11.1 150 434-591 2-156 (321)
37 cd00465 URO-D_CIMS_like The UR 99.8 2.7E-19 6E-24 186.6 15.7 231 110-355 63-305 (306)
38 PRK06052 5-methyltetrahydropte 99.7 1.7E-16 3.7E-21 164.7 9.4 134 432-591 4-151 (344)
39 PF08267 Meth_synt_1: Cobalami 99.4 2.3E-12 5.1E-17 134.4 10.9 156 433-591 1-186 (310)
40 cd03465 URO-D_like The URO-D _ 99.0 9.8E-09 2.1E-13 108.3 15.9 171 149-331 126-313 (330)
41 PRK06252 methylcobalamin:coenz 98.7 4.2E-07 9.1E-12 96.6 16.1 185 137-331 123-318 (339)
42 TIGR01463 mtaA_cmuA methyltran 98.7 4.9E-07 1.1E-11 96.2 16.5 183 137-331 123-320 (340)
43 cd03307 Mta_CmuA_like MtaA_Cmu 98.3 1.4E-05 3.1E-10 84.6 15.1 181 137-331 114-309 (326)
44 PF01208 URO-D: Uroporphyrinog 98.3 1.5E-05 3.3E-10 84.7 14.5 188 137-338 122-329 (343)
45 PLN02433 uroporphyrinogen deca 98.2 3.7E-05 7.9E-10 82.3 17.4 185 137-331 116-319 (345)
46 PRK00115 hemE uroporphyrinogen 98.1 0.00011 2.5E-09 78.4 17.9 185 137-331 123-326 (346)
47 cd00465 URO-D_CIMS_like The UR 98.1 1.6E-06 3.4E-11 90.7 3.4 112 466-590 27-148 (306)
48 TIGR01464 hemE uroporphyrinoge 98.0 0.00014 3E-09 77.5 16.6 186 136-331 116-321 (338)
49 cd00717 URO-D Uroporphyrinogen 98.0 0.00019 4.1E-09 76.3 16.7 185 137-331 114-318 (335)
50 cd03309 CmuC_like CmuC_like. P 97.7 0.00087 1.9E-08 71.1 15.6 174 150-331 114-304 (321)
51 COG0407 HemE Uroporphyrinogen- 96.6 0.037 8.1E-07 59.3 14.0 187 135-331 124-330 (352)
52 cd03308 CmuA_CmuC_like CmuA_Cm 95.7 0.25 5.4E-06 53.7 15.0 173 149-331 171-359 (378)
53 PF02581 TMP-TENI: Thiamine mo 92.8 2.4 5.2E-05 41.0 13.2 110 188-326 14-123 (180)
54 PRK03512 thiamine-phosphate py 88.7 3 6.5E-05 41.6 9.7 107 191-326 24-130 (211)
55 cd00564 TMP_TenI Thiamine mono 87.2 9.8 0.00021 36.3 12.2 111 187-326 13-123 (196)
56 PRK06512 thiamine-phosphate py 84.2 15 0.00033 36.9 12.1 110 189-326 29-139 (221)
57 PRK02615 thiamine-phosphate py 83.4 7.9 0.00017 41.7 10.2 110 188-326 159-268 (347)
58 PRK07695 transcriptional regul 83.2 22 0.00048 34.8 12.7 105 190-326 19-123 (201)
59 PRK08999 hypothetical protein; 83.2 8.3 0.00018 40.4 10.2 108 189-326 147-254 (312)
60 PF01729 QRPTase_C: Quinolinat 82.7 6.9 0.00015 37.8 8.6 62 192-267 93-155 (169)
61 TIGR00693 thiE thiamine-phosph 80.9 15 0.00034 35.5 10.6 109 188-326 15-124 (196)
62 KOG2872 Uroporphyrinogen decar 80.7 6.5 0.00014 40.9 7.8 160 179-361 186-356 (359)
63 PRK08195 4-hyroxy-2-oxovalerat 78.6 36 0.00077 36.5 13.2 134 189-336 28-174 (337)
64 PRK00043 thiE thiamine-phospha 78.2 9.3 0.0002 37.4 8.1 67 188-269 23-90 (212)
65 PLN02898 HMP-P kinase/thiamin- 77.6 16 0.00034 41.3 10.7 110 188-326 309-418 (502)
66 COG0646 MetH Methionine syntha 76.8 22 0.00047 37.4 10.4 143 181-330 138-297 (311)
67 PRK06256 biotin synthase; Vali 75.8 93 0.002 32.9 15.5 136 190-335 98-246 (336)
68 PRK12290 thiE thiamine-phospha 74.3 18 0.00039 40.1 9.5 108 190-326 221-328 (437)
69 COG0352 ThiE Thiamine monophos 73.8 25 0.00053 35.3 9.7 109 189-326 24-132 (211)
70 PLN02334 ribulose-phosphate 3- 73.3 60 0.0013 32.5 12.6 73 188-267 22-97 (229)
71 PRK05848 nicotinate-nucleotide 71.1 15 0.00032 38.3 7.7 65 191-269 194-259 (273)
72 TIGR03217 4OH_2_O_val_ald 4-hy 70.0 77 0.0017 33.9 13.1 134 189-336 27-173 (333)
73 COG3462 Predicted membrane pro 68.4 5.9 0.00013 35.2 3.4 28 15-42 89-116 (117)
74 cd00530 PTE Phosphotriesterase 66.4 1.4E+02 0.003 30.6 13.9 147 182-332 97-249 (293)
75 cd04724 Tryptophan_synthase_al 63.8 1.7E+02 0.0037 29.6 14.6 77 187-266 15-110 (242)
76 PRK09517 multifunctional thiam 63.0 84 0.0018 37.5 12.8 112 189-326 22-136 (755)
77 PRK07428 nicotinate-nucleotide 61.5 27 0.00058 36.7 7.4 62 193-268 210-272 (288)
78 PRK13585 1-(5-phosphoribosyl)- 60.9 53 0.0011 32.9 9.3 127 189-326 35-170 (241)
79 PRK12928 lipoyl synthase; Prov 60.5 2.2E+02 0.0048 29.8 14.8 156 190-355 94-268 (290)
80 PF09851 SHOCT: Short C-termin 59.4 19 0.0004 24.7 3.9 25 444-468 3-27 (31)
81 PRK08508 biotin synthase; Prov 58.3 2.3E+02 0.005 29.3 15.8 132 193-335 50-196 (279)
82 cd07948 DRE_TIM_HCS Saccharomy 57.7 2.3E+02 0.0051 29.2 14.6 127 189-331 25-167 (262)
83 cd07943 DRE_TIM_HOA 4-hydroxy- 57.5 1.5E+02 0.0032 30.4 12.0 136 189-336 25-171 (263)
84 PF09851 SHOCT: Short C-termin 57.5 24 0.00052 24.1 4.2 27 15-41 3-29 (31)
85 PRK10812 putative DNAse; Provi 56.6 2.4E+02 0.0052 29.0 14.9 143 218-385 109-254 (265)
86 PRK07896 nicotinate-nucleotide 55.1 49 0.0011 34.8 8.1 64 193-270 213-277 (289)
87 TIGR01334 modD putative molybd 53.2 45 0.00097 34.9 7.3 64 191-268 200-264 (277)
88 COG3462 Predicted membrane pro 53.0 19 0.0004 32.1 3.8 23 447-469 92-114 (117)
89 TIGR02660 nifV_homocitr homoci 52.6 3.2E+02 0.007 29.5 14.2 129 190-336 27-172 (365)
90 TIGR02082 metH 5-methyltetrahy 51.0 1.4E+02 0.0031 37.5 12.3 128 181-314 143-286 (1178)
91 PRK06096 molybdenum transport 50.3 52 0.0011 34.5 7.3 64 192-269 202-266 (284)
92 TIGR02090 LEU1_arch isopropylm 49.9 1.6E+02 0.0034 31.9 11.2 130 190-336 26-171 (363)
93 cd04731 HisF The cyclase subun 49.8 1.9E+02 0.0041 29.0 11.3 125 190-326 31-170 (243)
94 PF06187 DUF993: Protein of un 48.9 31 0.00066 36.9 5.3 107 180-291 126-250 (382)
95 PRK02083 imidazole glycerol ph 47.7 2E+02 0.0044 29.1 11.1 127 191-326 35-174 (253)
96 PRK08385 nicotinate-nucleotide 46.6 85 0.0018 32.8 8.2 65 191-269 194-261 (278)
97 PRK05581 ribulose-phosphate 3- 45.7 39 0.00084 33.2 5.4 71 188-268 18-94 (220)
98 cd07944 DRE_TIM_HOA_like 4-hyd 45.6 3.6E+02 0.0078 27.8 15.2 136 189-336 23-168 (266)
99 PF05120 GvpG: Gas vesicle pro 45.2 56 0.0012 27.6 5.4 36 14-49 34-69 (79)
100 cd07939 DRE_TIM_NifV Streptomy 44.2 3.6E+02 0.0078 27.4 14.1 143 189-359 23-182 (259)
101 COG0084 TatD Mg-dependent DNas 43.9 2E+02 0.0042 29.8 10.3 51 307-362 185-235 (256)
102 KOG3338 Divalent cation tolera 42.3 21 0.00045 32.9 2.5 50 93-144 95-144 (153)
103 PRK09490 metH B12-dependent me 40.8 2.3E+02 0.0049 35.9 11.8 127 182-314 160-302 (1229)
104 PRK15108 biotin synthase; Prov 40.7 2.2E+02 0.0047 30.6 10.5 114 191-315 84-211 (345)
105 PLN02389 biotin synthase 38.9 5.2E+02 0.011 28.2 13.1 127 191-326 124-265 (379)
106 cd00958 DhnA Class I fructose- 37.9 1.3E+02 0.0028 30.0 7.9 124 190-327 80-216 (235)
107 PRK06559 nicotinate-nucleotide 37.8 97 0.0021 32.6 7.0 63 191-270 209-272 (290)
108 PRK09016 quinolinate phosphori 36.3 1.1E+02 0.0023 32.4 7.0 63 191-270 220-283 (296)
109 COG4586 ABC-type uncharacteriz 35.6 1.3E+02 0.0028 31.7 7.3 80 200-292 175-258 (325)
110 PLN02716 nicotinate-nucleotide 35.1 1.3E+02 0.0028 32.0 7.4 71 192-270 216-293 (308)
111 PRK15124 2'-5' RNA ligase; Pro 35.0 2.3E+02 0.0049 27.1 8.7 95 211-318 10-114 (176)
112 PRK13361 molybdenum cofactor b 34.6 5.5E+02 0.012 27.1 12.4 104 190-325 52-160 (329)
113 PRK06978 nicotinate-nucleotide 34.0 1.4E+02 0.003 31.5 7.5 63 191-270 217-280 (294)
114 PTZ00170 D-ribulose-5-phosphat 34.0 2E+02 0.0043 29.0 8.4 20 187-206 20-39 (228)
115 PRK11858 aksA trans-homoaconit 33.5 6.6E+02 0.014 27.3 14.1 129 190-336 30-175 (378)
116 PRK08005 epimerase; Validated 33.5 5E+02 0.011 25.9 12.8 73 187-269 14-90 (210)
117 PRK05742 nicotinate-nucleotide 32.4 1.6E+02 0.0036 30.7 7.7 61 192-269 202-263 (277)
118 PRK08645 bifunctional homocyst 32.4 3E+02 0.0066 32.0 10.7 135 182-330 121-273 (612)
119 TIGR00735 hisF imidazoleglycer 32.4 4.3E+02 0.0094 26.8 10.8 125 191-326 35-176 (254)
120 cd03174 DRE_TIM_metallolyase D 32.3 5.2E+02 0.011 25.8 14.5 150 189-360 22-190 (265)
121 cd00429 RPE Ribulose-5-phospha 31.9 1.2E+02 0.0027 29.2 6.5 20 188-207 14-33 (211)
122 PRK05301 pyrroloquinoline quin 31.6 6.7E+02 0.015 26.9 13.3 122 189-327 52-191 (378)
123 PRK06543 nicotinate-nucleotide 31.5 1.7E+02 0.0037 30.6 7.6 63 191-270 205-268 (281)
124 PF00682 HMGL-like: HMGL-like 29.8 2E+02 0.0043 28.7 7.6 147 189-360 17-181 (237)
125 TIGR00078 nadC nicotinate-nucl 29.6 1.8E+02 0.004 30.1 7.5 59 192-267 191-250 (265)
126 cd07937 DRE_TIM_PC_TC_5S Pyruv 29.6 6.4E+02 0.014 26.0 11.8 136 191-336 26-179 (275)
127 PRK06106 nicotinate-nucleotide 29.5 1.8E+02 0.0039 30.5 7.4 60 193-269 208-268 (281)
128 COG0157 NadC Nicotinate-nucleo 29.3 2.2E+02 0.0048 29.8 7.8 64 192-270 201-265 (280)
129 cd07945 DRE_TIM_CMS Leptospira 28.9 6.8E+02 0.015 26.0 13.5 136 190-336 23-177 (280)
130 PF00036 EF-hand_1: EF hand; 28.6 47 0.001 22.3 1.9 25 16-40 1-28 (29)
131 PF00834 Ribul_P_3_epim: Ribul 27.8 2E+02 0.0043 28.5 7.0 143 188-367 14-162 (201)
132 cd01568 QPRTase_NadC Quinolina 27.7 2E+02 0.0044 29.7 7.4 57 195-266 197-254 (269)
133 cd00405 PRAI Phosphoribosylant 27.6 1.5E+02 0.0032 29.0 6.2 95 191-293 11-106 (203)
134 cd07940 DRE_TIM_IPMS 2-isoprop 25.9 7.2E+02 0.016 25.3 12.5 143 189-359 23-186 (268)
135 COG1099 Predicted metal-depend 25.4 5.9E+02 0.013 26.1 9.7 114 202-331 97-215 (254)
136 PRK01033 imidazole glycerol ph 25.4 5E+02 0.011 26.5 9.8 93 191-297 35-133 (258)
137 PF05120 GvpG: Gas vesicle pro 23.9 2.2E+02 0.0049 24.0 5.6 33 446-478 37-69 (79)
138 cd01573 modD_like ModD; Quinol 23.8 2.7E+02 0.006 28.9 7.5 58 195-266 199-257 (272)
139 TIGR00510 lipA lipoate synthas 23.6 8.9E+02 0.019 25.6 12.0 141 189-336 97-255 (302)
140 cd01572 QPRTase Quinolinate ph 23.1 2.9E+02 0.0062 28.6 7.5 62 192-270 195-257 (268)
141 COG0036 Rpe Pentose-5-phosphat 21.4 8.6E+02 0.019 24.6 10.8 68 187-268 17-92 (220)
142 COG0648 Nfo Endonuclease IV [D 20.7 4.9E+02 0.011 27.3 8.6 88 179-270 80-178 (280)
143 PRK08072 nicotinate-nucleotide 20.6 2.7E+02 0.0058 29.1 6.7 61 193-270 202-263 (277)
144 TIGR02109 PQQ_syn_pqqE coenzym 20.5 1E+03 0.022 25.1 12.7 121 189-326 43-181 (358)
145 KOG2672 Lipoate synthase [Coen 20.2 1.7E+02 0.0037 30.7 4.9 27 468-494 270-296 (360)
No 1
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-167 Score=1289.06 Aligned_cols=588 Identities=83% Similarity=1.244 Sum_probs=571.3
Q ss_pred CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCC
Q 007631 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (595)
Q Consensus 1 ~~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (595)
|.+|++||||||++||||+|+|+||.|+++.++|.++++++|.++|+.|+.+|+|+||+|+||+||+|||++.|||+||.
T Consensus 2 ~~S~i~G~PRiGp~RELK~A~E~~W~GKts~ddL~~va~~LR~~~WK~~k~aGv~~IPSN~FS~YDQvlD~t~~~~~vP~ 81 (765)
T KOG2263|consen 2 MASHIVGYPRIGPKRELKFALESFWDGKTSADDLQKVAADLRSSIWKLMKAAGVKIIPSNTFSHYDQVLDTTAMLGAVPP 81 (765)
T ss_pred cccccccCCCcCccHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchhHHHHHHhHHHHhcCCCc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHH
Q 007631 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (595)
Q Consensus 81 rf~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T 160 (595)
||+..-+.+.+|.||+|+||..+++|+||+||||+||||++||+..++.|++.+++.++||++||++|+.++|||+||+|
T Consensus 82 RYg~~sg~~~lD~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~s~KavdEf~EAK~lGi~T~PVLvGPvs 161 (765)
T KOG2263|consen 82 RYGRTSGEIGLDVYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYASHKAVDEFKEAKALGIDTVPVLVGPVS 161 (765)
T ss_pred ccccccCccchhhhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeeccchhHHHHHHHHhcCCcccceeecchh
Confidence 99877677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEE
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l 240 (595)
||+|+|..++...++++.+|+++|+|+|.|+|.+|.+||++|||||||+|++|++.+.++++..||..+......++++|
T Consensus 162 YL~l~K~aKg~~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l~a~k~AY~~l~~~~~~~~v~l 241 (765)
T KOG2263|consen 162 YLLLSKAAKGVDKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKLQAFKGAYAELESTLSGLNVLL 241 (765)
T ss_pred hhheeccccCcccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHHHHHHHHHHHHHhhccccceee
Confidence 99999976654335789999999999999999999999999999999999999999999999999999986544579999
Q ss_pred EeccCCCCcccHHHHhcCCC-ccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCC
Q 007631 241 ETYFADVPAETYKILTSLKG-VTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK 319 (595)
Q Consensus 241 ~tyfg~~~~~v~~~l~~l~p-vd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~ 319 (595)
+||||++-.+.++.|.+| | |.++|+|+++++++++.++..||.+|.|++|||||||||.+|+......|+++...+|.
T Consensus 242 ~TYF~~v~~~a~~~lk~L-~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~ 320 (765)
T KOG2263|consen 242 ATYFADVPAEAYKTLKSL-KGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGK 320 (765)
T ss_pred hhhhccCCHHHHHHHhCC-cceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhcc
Confidence 999999876669999999 7 99999999999999999988899999999999999999999999999999999999999
Q ss_pred CcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCCCCHHHH
Q 007631 320 DKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQ 399 (595)
Q Consensus 320 ~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 399 (595)
|++.||+||||+|+|+|+.+|++|++|||+|||||.|||.|++.|++++++..+.+.+.+|..+.++|+.|++++|++||
T Consensus 321 dkvvVstS~SlLHt~vdL~nE~kld~EiK~w~aFA~qK~~Ev~~l~Ka~sg~~~~a~~eaNa~~~~sR~~Sp~v~~~aV~ 400 (765)
T KOG2263|consen 321 DKVVVSTSCSLLHTAVDLINETKLDAEIKSWLAFAAQKVVEVNALAKALSGQKVEALFEANAAALASRRSSPRVTNEAVQ 400 (765)
T ss_pred ceEEEeechhhhccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhcchHHHhhccCCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred hHHhhCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 007631 400 KPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQE 479 (595)
Q Consensus 400 ~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe 479 (595)
+|++++++.|.+|.+||+.|..+||++||||+||||||||||||.+||..|++|++|.||+++|.++++++|.++|+.||
T Consensus 401 ~r~a~v~~~~h~R~t~~~~Rl~~QQk~lnLPl~PTTTIGSFPQTkelR~~R~~f~~~~IS~edY~k~I~~Ei~kVvkfQE 480 (765)
T KOG2263|consen 401 KRVAAVKGSDHRRATPVSARLDAQQKKLNLPLLPTTTIGSFPQTKELRRVRREFKAKKISEEDYVKFIKEEIEKVVKFQE 480 (765)
T ss_pred HHHHhcCcccccccCchhhhhHHHHhhcCCCccccccccCCcchHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceeeec
Q 007631 480 ELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLT 559 (595)
Q Consensus 480 ~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~lp 559 (595)
++||||++|||.+|||||+||+|+|+||.||.||||||||+||+|||||+|+|+|+++|+|.|..|+|++|.+|||+|||
T Consensus 481 elgiDVLVHGEpERNDMVeyFGEql~GfaFTvNGWVQSYGSRcVkPPiI~GDvsRPk~MtV~~S~~AQs~TsrPmKGMLT 560 (765)
T KOG2263|consen 481 ELGIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSYAQSMTSRPMKGMLT 560 (765)
T ss_pred HhCccEEecCCcccccHHHHHHhhccceEEEecchhHhhcCcccCCCeeeccccCCCcceeeHHHHHHHHhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhhhcCCCCCCChhHHHHHHHHHHHh
Q 007631 560 GPVTILNWSFVRNDQPRQGINQIQCPVNLRI 590 (595)
Q Consensus 560 gP~ti~~~s~~~~y~~~~~~~~~diA~a~r~ 590 (595)
||+||++|||+|+++++. +.|+|||+|+|+
T Consensus 561 gPvTiL~WSF~R~D~~~~-~~~~QiALaikD 590 (765)
T KOG2263|consen 561 GPVTILNWSFVRNDQPRH-ETCYQIALAIKD 590 (765)
T ss_pred CceEEEEeccccCCcchh-HHHHHHHHHHHH
Confidence 999999999999999999 999999999986
No 2
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=1.1e-158 Score=1350.33 Aligned_cols=587 Identities=86% Similarity=1.299 Sum_probs=559.7
Q ss_pred CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCC
Q 007631 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (595)
Q Consensus 1 ~~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (595)
|+||++||||||++||||+|+|+||+|++++++|.++++++++.+|+.|+++|||+||||||||||||||+++|||.||+
T Consensus 1 ~~~~~lGyPRig~~ReLKka~e~yw~G~is~eeL~~~~~~~~~~~~~~Q~~aGld~ItdGdfsryD~vLD~~~m~g~ip~ 80 (766)
T PLN02475 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (766)
T ss_pred CCccccCCCCCCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCcchhHHHHhHHHHhccchh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHH
Q 007631 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (595)
Q Consensus 81 rf~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T 160 (595)
||+...+..+++.||+||||..+++|++|||||||||||+|||+.+++.|++.++.++++|++|+++|+.+||||+||+|
T Consensus 81 r~~~~~g~~~l~~yfamaRG~~~~~a~emtKwFdtNYHY~VPe~~~~~~f~~~~~~~l~e~~eA~~~g~~~kpVl~GP~T 160 (766)
T PLN02475 81 RYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVKFSYASHKAVNEYKEAKALGVDTVPVLVGPVS 160 (766)
T ss_pred hhhccCCcchHHHHHHHhcCCcccccccceEEecCCcceECcEECCCCccccCccchHHHHHHHHHcCCCCCcEEECHHH
Confidence 99744333569999999999656789999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCC-CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEE
Q 007631 161 YLLLSKPAK-GVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVL 239 (595)
Q Consensus 161 ~l~lsk~~~-~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~ 239 (595)
|++||++.. +| .++++.+++++|+++|+++|++|.++||+|||||||+|++|++.++++++.++|+.|.++.+.++++
T Consensus 161 ~l~Lsk~~~~~~-~~~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~ 239 (766)
T PLN02475 161 YLLLSKPAKGVD-KSFDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLSGLNVL 239 (766)
T ss_pred HHHHhccccccc-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCHHHHHHHHHHHHHHHhccCCCeEE
Confidence 999999643 34 2367999999999999999999999999999999999999999899999999999998765557999
Q ss_pred EEeccCCCC-cccHHHHhcCCC-ccEEEEEeecCCCChhhHhh-hCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhh
Q 007631 240 IETYFADVP-AETYKILTSLKG-VTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGT 316 (595)
Q Consensus 240 l~tyfg~~~-~~v~~~l~~l~p-vd~i~lD~~~~~~~l~~l~~-~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~ 316 (595)
|+||||+++ ++ ++.+.++ | ||+|||||++++++++.+.. .+|++|.|++|||||||+|++|+++++++|+++.+.
T Consensus 240 l~TyFg~~~~~~-~~~l~~l-p~Vd~l~lD~v~~~~~L~~l~~~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~ 317 (766)
T PLN02475 240 VETYFADVPAEA-YKTLTSL-KGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRNIWANDLAASLATLQALEGI 317 (766)
T ss_pred EEccCCCCCHHH-HHHHHcC-CCCCEEEEEecCChhhHHHHHhccCCCCCeEEEEEEeCCCcccCCHHHHHHHHHHHHHh
Confidence 999999999 58 9999999 9 99999999998889999855 478899999999999999999999999999999998
Q ss_pred cCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCCCCH
Q 007631 317 VGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNE 396 (595)
Q Consensus 317 ~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (595)
+|+++|||+|||||+|+|++++.|++||+++|+|||||+|||.||++|+++++++...+.+.+|.++++.|+.|++++|+
T Consensus 318 ~~~~~l~v~psCsLlhvP~~~~~e~~l~~~~~~~~afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (766)
T PLN02475 318 VGKDKLVVSTSCSLLHTAVDLVNETKLDKELKSWLAFAAQKVVEVVALAKALAGQKDEAFFSANAAAQASRRSSPRVTNE 397 (766)
T ss_pred cCCCcEEEeCCCCCccCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhcCCccCCH
Confidence 88899999999999999999999999999999999999999999999999997642256789999999999999999999
Q ss_pred HHHhHHhhCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 007631 397 AVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVK 476 (595)
Q Consensus 397 ~v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~ 476 (595)
+||+|+++|+++|++|++||++|+++|+++||||+||||||||||||++|+++|++|++|+|+.++|+++++++|+++|+
T Consensus 398 ~v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~lptT~IGSfPrp~~lr~ar~~~~~G~i~~e~~~~~~~~aI~~~V~ 477 (766)
T PLN02475 398 AVQKAAAALKGSDHRRATPVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISEEDYVKAIKEEIAKVVK 477 (766)
T ss_pred HHHHHHHhCChhhcccCCcHHHHHHHHHHHhCCCCCCCccccCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCcee
Q 007631 477 LQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKG 556 (595)
Q Consensus 477 ~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~ 556 (595)
.|+++|||||||||++|+|||+||+++|+||.++.+|||||||++|+|+|+|+|+|++++||+++|++|+|++|++|+|+
T Consensus 478 ~Qe~~GlDvltdGE~~R~dmv~~F~e~L~Gf~~~~~g~v~~~g~~~~r~p~i~G~I~~~~~~~v~~~~~aq~~t~~~vK~ 557 (766)
T PLN02475 478 LQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSVAQSMTKRPMKG 557 (766)
T ss_pred HHHHcCCCeeecCceeccchHHHHHHhCCCeeecCCceEEeeCCcCCCCCeEeccccCCCCCCHHHHHHHHhccCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccHHHHHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631 557 MLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 557 ~lpgP~ti~~~s~~~~y~~~~~~~~~diA~a~r~~ 591 (595)
|||||+||++||++++|.+++ +++.|||+|||+-
T Consensus 558 ~ltGP~Ti~~~s~~r~~~~~~-e~~~~iA~alr~E 591 (766)
T PLN02475 558 MLTGPVTILNWSFVRNDQPRH-ETCYQIALAIKDE 591 (766)
T ss_pred EEecHHHHHhhhhcccCCCHH-HHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999963
No 3
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=9.2e-153 Score=1308.54 Aligned_cols=583 Identities=55% Similarity=0.929 Sum_probs=554.7
Q ss_pred CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCC
Q 007631 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (595)
Q Consensus 1 ~~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (595)
|+||++||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+|||||||||||||||++|||+||+
T Consensus 2 ~~~~~lGyPRiG~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~~Gld~it~Gdfs~yd~vLD~~~~lg~ip~ 81 (758)
T PRK05222 2 IKTHILGFPRIGPRRELKKALESYWAGKISEEELLATARELRARHWQRQKEAGLDLIPVGDFSYYDHVLDTAVLLGAIPE 81 (758)
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEeccCCcccHHHHHHHHHHhCCCch
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHH
Q 007631 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (595)
Q Consensus 81 rf~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T 160 (595)
||....+..++++||+|+||..+.++++|||||||||||+|||+++++.|++..++++++|++|+++|+++|||||||+|
T Consensus 82 rf~~~~~~~~~~~yF~~arg~~~~~~~emtKwF~tNYhY~VPei~g~~~~~~~~~~~l~e~~~ak~~g~~~K~vl~GP~T 161 (758)
T PRK05222 82 RFGNLGGSVDLDTYFAMARGGKDVAALEMTKWFNTNYHYIVPEFDPDTQFKLTSNKLLDEFEEAKALGINTKPVLLGPVT 161 (758)
T ss_pred hhccccCCCccccceecccCCCCcccccceEEecCCCceeCcEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEccHHH
Confidence 99754334578999999999766668999999999999999999999999888899999999999999999999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEE
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l 240 (595)
|++|+++...| +++.+++++|+++|+++|++|+++||+|||||||+|+++++.++.+++.++|+.+.+..++++++|
T Consensus 162 ~l~ls~~~~~~---~~~~ell~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l 238 (758)
T PRK05222 162 FLWLSKSKGEG---FDRLDLLDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLL 238 (758)
T ss_pred HHHHhcccccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999841233 589999999999999999999999999999999999999988899999999999987544579999
Q ss_pred EeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCC
Q 007631 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKD 320 (595)
Q Consensus 241 ~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~ 320 (595)
+||||+++++ ++.|.++ |||+|||||++++.+++++...+|.+|.|++|||||||+|+||+++++++|+++.+++ +
T Consensus 239 ~tyfg~~~~~-~~~l~~l-~Vd~l~LD~~~~~~~l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e 314 (758)
T PRK05222 239 ATYFGSLNDA-LDLLASL-PVDGLHLDLVRGPEQLAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--D 314 (758)
T ss_pred EeeccchhhH-HHHHHcC-CCCEEEEEeeCCccchHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--c
Confidence 9999999877 9999999 9999999999987789999755788999999999999999999999999999999987 8
Q ss_pred cEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhhhcCCCCCCHHH
Q 007631 321 KVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQ--KDEAYFSSNAAAQASRKSSPRVTNEAV 398 (595)
Q Consensus 321 rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (595)
+|||||||||+|||+++..|++||+++++|||||+|||+||++|+++++++ ++...+.+|.++++.|+.|++++|++|
T Consensus 315 ~L~lspsCgL~~vP~~~~~E~~l~~~~~~~~afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 394 (758)
T PRK05222 315 RLWVAPSCSLLHVPVDLDAETKLDPELKSWLAFAKQKLEELALLARALNGGRGAVAEALAANRAAIAARRTSPRVHNPAV 394 (758)
T ss_pred cEEEeCCCCCcCCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhCCccCCHHH
Confidence 999999999999999999999999999999999999999999999999762 345578999999999999999999999
Q ss_pred HhHHhhCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 007631 399 QKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQ 478 (595)
Q Consensus 399 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Q 478 (595)
|+|+++|+++|++|++||++|+++|+++||||+||||||||||||++|+++|+++++|+|+.++|+++++++|+++|+.|
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~IGSfPrp~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~Q 474 (758)
T PRK05222 395 RARLAALTEADFQRQSPYAERAAAQRARLNLPLLPTTTIGSFPQTTEIRKARAAFKKGELSEEEYEAFIREEIARAIRLQ 474 (758)
T ss_pred HHHHHhCCHhhcccCCcHHHHHHHHHHHhCCCCCcccccCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceeee
Q 007631 479 EELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGML 558 (595)
Q Consensus 479 e~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~l 558 (595)
+++|||||||||++|+|||+||+++|+||.++.+|||||||++|++||+|+|+|++++|++++|++|+|++|+++||+||
T Consensus 475 e~~GlDvltdGE~~R~d~v~~F~~~l~Gf~~~~~g~v~~~g~~~~r~p~i~G~i~~~~p~~v~~~~~aq~~t~~~vK~~l 554 (758)
T PRK05222 475 EELGLDVLVHGEFERNDMVEYFGEQLDGFAFTQNGWVQSYGSRCVKPPIIYGDVSRPEPMTVEWIKYAQSLTDKPVKGML 554 (758)
T ss_pred HHcCCCEeecCceeeeehHHHHHHhCCCeeecCCceeeeeCCcCCCCCeeeCCCcCCCCCchHHHHHHHhccCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631 559 TGPVTILNWSFVRNDQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 559 pgP~ti~~~s~~~~y~~~~~~~~~diA~a~r~~ 591 (595)
|||+||++||++++|.+++ +++.|||.|||+-
T Consensus 555 tGP~T~~~~s~~r~~~~~~-e~~~dlA~al~~E 586 (758)
T PRK05222 555 TGPVTILNWSFVRDDQPRE-ETARQIALAIRDE 586 (758)
T ss_pred ecHHHHHHHHhcccCCCHH-HHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999863
No 4
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=2.2e-150 Score=1287.63 Aligned_cols=578 Identities=60% Similarity=0.978 Sum_probs=550.0
Q ss_pred ccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCcccCC
Q 007631 6 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWN 85 (595)
Q Consensus 6 ~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~rf~~~ 85 (595)
+||||||++||||+|+|+||+|++++++|.++++++++++|+.|+++|||+||||||||||||||+++|||.||+||+..
T Consensus 1 ~g~PRig~~reLK~a~e~yw~gki~~~~L~~~~~~~~~~~~~~Q~~aGld~ItdGdfs~yD~vLd~~~~~g~ip~r~~~~ 80 (750)
T TIGR01371 1 LGFPRIGPKRELKKALESYWAGKITKEELLKVAKDLRKKNWKLQKEAGVDFIPSNDFSLYDHVLDTAVMLGAIPERFGNY 80 (750)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCCcchHHHHHHHHHHhccchHhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred CCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHHHhhhc
Q 007631 86 GGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLS 165 (595)
Q Consensus 86 ~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T~l~ls 165 (595)
.+..+++.||+||||..++.+++|||||||||||+|||+++++.|++..+.++++|++|+++|+++||||+||+||++||
T Consensus 81 ~~~~~~~~yFa~arG~~~~~~~emtKwFdtNYhY~VPe~~~~~~~~l~~~~~~~e~~~A~~~g~~~Kpvl~GP~T~l~ls 160 (750)
T TIGR01371 81 GGDLDLDTYFAMARGNKDVPALEMTKWFNTNYHYIVPELSPTTEFKLTSNKPLEEYLEAKELGIETKPVLLGPITFLKLS 160 (750)
T ss_pred ccccchhhhHHHhhCCCCcccceeEEEECCCCeeECCEECCCcceecCcchHHHHHHHHHhcCCCCeEEEECHHHHHHHh
Confidence 22247899999999976678899999999999999999999999999899999999999999999999999999999999
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccC
Q 007631 166 KPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA 245 (595)
Q Consensus 166 k~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg 245 (595)
+...+| +++++++++|+++|+++|++|.++||+|||||||+|++|++.++++++.++|+.|..+.++++++||||||
T Consensus 161 k~~~~y---~~~~~ll~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg 237 (750)
T TIGR01371 161 KAVEEP---FEPLSLLEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD 237 (750)
T ss_pred CccCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC
Confidence 843344 68999999999999999999999999999999999999999889999999999998765558999999999
Q ss_pred CCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEe
Q 007631 246 DVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVS 325 (595)
Q Consensus 246 ~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vs 325 (595)
+++++ ++.|.++ |||+||+||++++.+++.+...+|++|.|++|||||||+|++|+++++++|+++.+.. ++|||+
T Consensus 238 ~~~~~-~~~l~~l-pvd~l~lD~v~~~~~L~~~~~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~--~~l~v~ 313 (750)
T TIGR01371 238 SVGDA-LEALVSL-PVKGIGLDFVHGKGTLELVKAGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV--GKLVVS 313 (750)
T ss_pred chHHH-HHHHHcC-CCCEEEEEeccCcccHHHHHhcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC--CCEEEe
Confidence 99988 9999999 9999999999988899988655888999999999999999999999999999999854 579999
Q ss_pred CCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhhhcCCCCCCHHHHhHHh
Q 007631 326 TSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQ--KDEAYFSSNAAAQASRKSSPRVTNEAVQKPAA 403 (595)
Q Consensus 326 psCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 403 (595)
|||||+|||+|+..|++||+++++|||||+|||.||++|+++++++ +....+.+|.++++.|+.|++++|++||+|++
T Consensus 314 psCsLlhvP~~~~~e~~l~~~~~~~~~fa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (750)
T TIGR01371 314 TSCSLLHVPVDLELETKLDPELKSWLAFAKEKLEELKALKRALNGNDDAVAFALEANAAAIAARKSSPRVNDAQVKARLA 393 (750)
T ss_pred CCCCcccCCccCcccccCCHHHHhhhhhHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhcCCccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999763 34556889999999999999999999999999
Q ss_pred hCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 007631 404 ALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDI 483 (595)
Q Consensus 404 ~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~Gl 483 (595)
+|+++|++|++||++|+++||++|+||+||||||||||||.+|+++|++|.+|++|.++|+++++++|+++|+.|+++||
T Consensus 394 ~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~vGSfPr~~~lk~are~~~~G~is~eel~~~~~~~i~~~i~~Qe~aGL 473 (750)
T TIGR01371 394 NLKEDDFRRRSPFKERLPLQQKRLNLPLLPTTTIGSFPQTPEVRKARAAYRKGEISEEEYEKFIKEEIKKVIKIQEELGL 473 (750)
T ss_pred hCCHhhcccCCcHHHHHHHHHHHhCCCCCcCcccCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceeeeccHHH
Q 007631 484 DVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVT 563 (595)
Q Consensus 484 dvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~lpgP~t 563 (595)
|+||||||+|+|||+||+++|+||.++.+||||+||++|+++|+|+|++++++||+++|++|+|+++++++|+|||||+|
T Consensus 474 Dvi~~GEf~r~D~v~~F~e~L~G~~~~~~G~v~~~g~~~v~~P~i~g~v~~~~~~~v~~~~~aq~lt~~~vK~~LtGPvT 553 (750)
T TIGR01371 474 DVLVHGEFERNDMVEYFGEKLAGFAFTQNGWVQSYGSRCVRPPIIYGDVSRPKPMTVKWSVYAQSLTSKPVKGMLTGPVT 553 (750)
T ss_pred CEeccCCeeeecHHHHHhhcCCcEEEecCcceeecCCcCCCCCEEeCCCCCCCCCchHHHHHHHhccCCCCceEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631 564 ILNWSFVRNDQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 564 i~~~s~~~~y~~~~~~~~~diA~a~r~~ 591 (595)
|+.||++++|.+++ +++.|||.||++-
T Consensus 554 ~l~~s~~r~d~~~~-~~~~~la~a~~~e 580 (750)
T TIGR01371 554 ILNWSFVRDDIPRK-EIAYQIALAIRDE 580 (750)
T ss_pred HHhhhhhccCCCHH-HHHHHHHHHHHHH
Confidence 99999999999999 9999999999863
No 5
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=100.00 E-value=9.5e-99 Score=799.98 Aligned_cols=360 Identities=56% Similarity=0.925 Sum_probs=337.4
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
.||++||||||++||||+|+|+||+|+||+++|+++++++++++|+.|+++|||+||||||||||||||++++||+||+|
T Consensus 1 ~~~~~GyPrig~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~~Gl~~it~Gef~~yd~~ld~~~~l~~ip~r 80 (360)
T cd03312 1 KTHILGFPRIGANRELKKALESYWKGKISEEELLATAKELRLRHWKLQKEAGIDLIPVGDFSLYDHVLDTSVLLGAIPER 80 (360)
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCchhHHHHHHHHHHhCCCchh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSY 161 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T~ 161 (595)
|....+..++++||+|+||..+..+++|||||||||||+|||+.+++.+++..++++++|++|+++|.++|||||||+||
T Consensus 81 ~~~~~~~~~~~~yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~~~~~l~~~~~a~~~~~~~K~~i~GP~T~ 160 (360)
T cd03312 81 FGALGGLVDLDTYFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLASNKLLDEYLEAKALGINTKPVLLGPVTF 160 (360)
T ss_pred hccccCCccHHHHHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccCcchHHHHHHHHHhcCCCCcEEEECHHHH
Confidence 98543335789999999997667899999999999999999999999998788999999999999999999999999999
Q ss_pred hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEE
Q 007631 162 LLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE 241 (595)
Q Consensus 162 l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~ 241 (595)
+.||++...| .++.+++++|+++|++++++|+++||+|||||||+|+++++.++.+.+.++|+.+.++.++.+++|+
T Consensus 161 ~~ls~~~~~Y---~~~~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~ 237 (360)
T cd03312 161 LKLSKAKGGG---FDRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLA 237 (360)
T ss_pred HHHhcccccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 9999853225 5889999999999999999999999999999999999999888999999999999876555799999
Q ss_pred eccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCc
Q 007631 242 TYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDK 321 (595)
Q Consensus 242 tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~r 321 (595)
||||+++++ ++.|.++ |||+|+|||++++++++.+...+|++|.|++|||||||+|+||+++++++|+++.+++ .+|
T Consensus 238 tyfg~~~~~-~~~l~~l-~Vd~l~le~~~~~~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~ 314 (360)
T cd03312 238 TYFGSLGEN-LDLLASL-PVDGLHLDLVRGPENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDR 314 (360)
T ss_pred ecccchHHH-HHHHHcC-CCCEEEEEecCCcccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCc
Confidence 999998776 9999999 9999999999987899999765667899999999999999999999999999999988 699
Q ss_pred EEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHH
Q 007631 322 VVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (595)
Q Consensus 322 l~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~ 367 (595)
|||||||||+|+|+++..|++||+++++|||||+|||+||++|+++
T Consensus 315 l~lsp~CgL~~lP~~~~~e~~~~~~~~~~lafa~~k~~e~~~l~~~ 360 (360)
T cd03312 315 LVVSPSCSLLHVPVDLENETKLDPELKSWLAFAKQKLEELALLARA 360 (360)
T ss_pred EEEECCCCCcCCCcccccccCCCHHHHhhcchHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999863
No 6
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=100.00 E-value=1.4e-92 Score=732.30 Aligned_cols=308 Identities=50% Similarity=0.895 Sum_probs=258.3
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+||++||||||++||||+|+|+||+|+||+++|+++++++|.++|+.|+++|||+||+||||||||||||++|||+||+|
T Consensus 1 kt~~lGyPRiG~~RELK~alE~yW~g~~~~~~L~~~~~~lr~~~w~~q~~agld~ip~gdfs~YD~vLD~~~~~g~iP~r 80 (310)
T PF08267_consen 1 KTHILGYPRIGPNRELKKALEAYWKGKISEEELEQTAKELRKEHWQLQKEAGLDLIPVGDFSLYDHVLDTAVLLGAIPER 80 (310)
T ss_dssp -EE-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHTT-SBEEES---SS-HHHHHHHHTT---GG
T ss_pred CCccccCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCchhhHHHHHHHHhccCChh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSY 161 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T~ 161 (595)
|+...+..+++.||+||||..+++|++|||||||||||+|||+++++.|++..++++++|++|+++|+++||||+||+||
T Consensus 81 f~~~~~~~~l~~yFamARG~~~~~a~eMtKWFdTNYHY~VPE~~~~~~f~l~~~~~~~~~~eA~~~G~~~kpvL~GP~Tf 160 (310)
T PF08267_consen 81 FRHADGLDDLDRYFAMARGTDDVPALEMTKWFDTNYHYIVPEITGDTEFKLDSNKLLDEFREAKALGINTKPVLPGPVTF 160 (310)
T ss_dssp GCT-TSSSSHHHHHHHHHSCCCCT--EEEESTTSS-EEEE-EE-TTS----SCCHHHHHHHHHHHTTGGEEEEEE-HHHH
T ss_pred hccCCCCCCHhheeeeccCCCCCchHHHHHHhccCCCeEceEECCCCceeeCcchHHHHHHHHHhhhcCCeeEEEcHHHH
Confidence 99655566899999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEE
Q 007631 162 LLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE 241 (595)
Q Consensus 162 l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~ 241 (595)
++|||+ .++ .++.+++++|+++|+++|++|+++||+|||||||+|++|+++++.+++..+|+.|. ...+++|+|+
T Consensus 161 L~Lsk~-~~~---~~~~~ll~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~~~~~~~~~~aY~~L~-~~~~~~ill~ 235 (310)
T PF08267_consen 161 LLLSKN-EDG---SDPLDLLDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLPEEWLEAFEEAYEELA-AAPRPKILLA 235 (310)
T ss_dssp HHTSEE-TTC---CHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHC-CTTTSEEEEE
T ss_pred HHHcCc-CCC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCCHHHHHHHHHHHHHHh-cCCCCcEEEE
Confidence 999996 332 37899999999999999999999999999999999999999999999999999996 3346899999
Q ss_pred eccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhh-hCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhh
Q 007631 242 TYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGT 316 (595)
Q Consensus 242 tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~-~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~ 316 (595)
||||+..++ ++.++++ ||++||||++++..+++.+.. +||++|.|++|||||||||++|+++++++|+++.+.
T Consensus 236 TYFg~~~~~-l~~l~~l-pv~~l~lDlv~~~~~l~~~~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~~ 309 (310)
T PF08267_consen 236 TYFGDLGDN-LELLLDL-PVDGLHLDLVRGPENLEALLKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLREK 309 (310)
T ss_dssp --SS--CCH-HHHHTTS-SESEEEEETTTHCHHHHHHHHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHHC
T ss_pred CCCCchhhH-HHHHhcC-CCcEEEeeccCCcccHHHHHhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHhc
Confidence 999999998 9999999 999999999998889999988 799999999999999999999999999999999764
No 7
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.3e-65 Score=540.03 Aligned_cols=308 Identities=21% Similarity=0.381 Sum_probs=277.1
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+||+++|||+ ++||+|+|+||+|+++.++|+++.+++++.+|+.|+++|||+|||||||| |||+|+
T Consensus 5 tt~VGS~Prp---~~Lk~a~e~~~~g~i~~~~l~~~~~~a~~~~v~~Q~~aGlD~itdGe~r~-d~~~~~---------- 70 (326)
T PRK08575 5 KALVGSYPRP---VKLAKVISWYNSGKISKEKLEKAINENTKRFFELAKDVGIDYTTDGLFRW-DDIFDP---------- 70 (326)
T ss_pred eeeeCCCCCC---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeCCCCcch-HHHHHH----------
Confidence 4777789999 99999999999999999999999999999999999999999999999988 988865
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccC-CcccHHHHHHHHHc----C--CCCceE
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYA-SHKAVQEYKEAKAL----G--METVPV 154 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~-~~~~~~~~~~a~~~----g--~~~K~v 154 (595)
+|.++|| +.+++|+|||||||||++|+++++ +++. .++++++|++|+++ | .++|++
T Consensus 71 ------------f~~~~~G---~~~~~~~k~f~~ny~y~~P~v~g~--i~~~~~~~~~~~~~~ak~~~~~~~~~~~~K~v 133 (326)
T PRK08575 71 ------------TISFISG---VEKGGLQRFYDNNFYYRQPVIKEK--INLKEENPYLQWLESAREIKEEVSLESKLKAV 133 (326)
T ss_pred ------------HHHHcCC---cccCceeEecCCCceeeCeEEEee--ecCCCCCccHHHHHHHHHhHhccCCCCCccEE
Confidence 3567788 456789999999999999999995 4444 46799999999987 3 389999
Q ss_pred eehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecccc-ccCCChHHHHHHHHHHHHHHcCC
Q 007631 155 LVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTL-VLDLDSHKLQAFSDAYSELQSSL 233 (595)
Q Consensus 155 l~GP~T~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L-~~d~~~~~~~~~~~ay~~l~~~~ 233 (595)
||||+||+.++++ ++| .+.++++.+++.+|++++++|++ ||+|||||||+| +++++.++.+.+.++|+.+.++.
T Consensus 134 l~GP~T~~~~s~~-~~Y---~~~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~~~~~~~~~~a~~~~~~~~ 208 (326)
T PRK08575 134 LPGPLTYAVLSDN-EYY---KNLIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIKRDTLEKLPEVYKTMAKNV 208 (326)
T ss_pred EecHHHHHHHhcc-ccC---CCHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999986 556 47889999999999999999999 999999999999 89998889999999999998766
Q ss_pred CCCcEEEEeccCCC-CcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHH
Q 007631 234 SGLNVLIETYFADV-PAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQD 312 (595)
Q Consensus 234 ~~~~i~l~tyfg~~-~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~ 312 (595)
+.+++||||||.. .++ ++.|.++ |||+||+|++++..+++.+...+| +|.|++|||||||+++|+++++.++|++
T Consensus 209 -~~~i~l~tyfg~~~~~~-~~~l~~~-~vd~l~ld~~~~~~~l~~~~~~~~-~k~l~~GviD~rn~~vE~~eev~~~i~~ 284 (326)
T PRK08575 209 -NIEKHLMTYFEINNLKR-LDILFSL-PVTYFGIDVIENLKKLGRVYTYLK-GRKVYLGILNARNTKMEKISTIRRIVNK 284 (326)
T ss_pred -CCCEEEECCCCCccccH-HHHHhcC-CCcEEEEEecCChhHHHHHHhhCC-CCEEEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 3789999999952 245 9999999 999999999987778888866666 7999999999999999999999999999
Q ss_pred HHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHH
Q 007631 313 LAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (595)
Q Consensus 313 ~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~ 366 (595)
+.+ +|+++|||+|||||..+|++ .|.+||.=|+...+
T Consensus 285 ~~~-~~~~~l~v~pdcgl~~lp~~----------------~a~~KL~~l~~~~~ 321 (326)
T PRK08575 285 VKR-KGVSDIIVGNNTLFDFIPEV----------------VAVKKLKLLGKLEK 321 (326)
T ss_pred HHh-cCCCeEEEeCCCCcccCcHH----------------HHHHHHHHHHHHHh
Confidence 999 89999999999999999998 68999998887743
No 8
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=7.8e-53 Score=483.16 Aligned_cols=314 Identities=16% Similarity=0.195 Sum_probs=267.4
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||+||||+ .+||+|+++||+|+||+++|++++++++.++|+.|+++|||+||||||+|||+|. |
T Consensus 424 tt~vGSfPr~---~~lk~are~~~~G~is~eel~~~~~~~i~~~i~~Qe~aGLDvi~~GEf~r~D~v~-----------~ 489 (750)
T TIGR01371 424 TTTIGSFPQT---PEVRKARAAYRKGEISEEEYEKFIKEEIKKVIKIQEELGLDVLVHGEFERNDMVE-----------Y 489 (750)
T ss_pred CcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCeeeecHHH-----------H
Confidence 5788889999 7799999999999999999999999999999999999999999999999999984 4
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcC-CCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALG-METVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g-~~~K~vl~GP~T 160 (595)
|. ..|++||.|+||. .+.|++. +|.+|++.+++.+ ..+..++++++|++++ .++|++|+||+|
T Consensus 490 F~-----e~L~G~~~~~~G~--------v~~~g~~-~v~~P~i~g~v~~--~~~~~v~~~~~aq~lt~~~vK~~LtGPvT 553 (750)
T TIGR01371 490 FG-----EKLAGFAFTQNGW--------VQSYGSR-CVRPPIIYGDVSR--PKPMTVKWSVYAQSLTSKPVKGMLTGPVT 553 (750)
T ss_pred Hh-----hcCCcEEEecCcc--------eeecCCc-CCCCCEEeCCCCC--CCCCchHHHHHHHhccCCCCceEEechHH
Confidence 43 1578888888872 1223333 4789999998654 3455699999999996 899999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC---hHHHHHHHHHHHHHHc---CCC
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD---SHKLQAFSDAYSELQS---SLS 234 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~---~~~~~~~~~ay~~l~~---~~~ 234 (595)
|+.||+. .+| .++.+++.+|+++|++++++|+++||+|||||||+|+.+++ .++.+.+..+|+.+.. +.+
T Consensus 554 ~l~~s~~-r~d---~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~ 629 (750)
T TIGR01371 554 ILNWSFV-RDD---IPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSGVK 629 (750)
T ss_pred HHhhhhh-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 9999985 332 58899999999999999999999999999999999998876 4566777777777653 333
Q ss_pred -CCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCC-CChhhHhh--hCCCCcEEEEeEeeCCCCCCCCHHHHHHHH
Q 007631 235 -GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKT--EFPLGKYLFAGVVDGRNIWANDLASSLTTL 310 (595)
Q Consensus 235 -~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~-~~l~~l~~--~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i 310 (595)
..+|++|+|||+++++ ++.|.++ +||+|+||++++. +.++.+.. .+| +.|++||||+||+|++|+++++++|
T Consensus 630 ~~~~I~~H~C~g~~~~i-~~~l~~l-~vD~i~lE~~r~~~e~L~~~~~~~~~~--~~ig~GVvD~~s~~ve~~eei~~~i 705 (750)
T TIGR01371 630 DETQIHTHMCYSEFNEI-IESIADL-DADVISIEASRSDMELLSAFKNGFGYP--NGIGPGVYDIHSPRVPSVEEMADLI 705 (750)
T ss_pred CCCEEEEEEECCCcHHH-HHHHHhC-CCCEEEEEecCCChhHHHHhhhhcccC--CeEEEEEEeCCCCCcCCHHHHHHHH
Confidence 4789999999999987 9999999 9999999999854 45555543 243 5699999999999999999999999
Q ss_pred HHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 311 QDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 311 ~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
+++.++++.+||||||||||...+++ =|.+||.-|+..++.++
T Consensus 706 ~~a~~~i~~erl~vsPdCGL~tr~~~----------------~~~~~L~~mv~aa~~~r 748 (750)
T TIGR01371 706 EKALQVLPAERLWVNPDCGLKTRNWE----------------EVIASLKNMVEAAKEAR 748 (750)
T ss_pred HHHHHhcCcceEEEeCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHh
Confidence 99999998899999999999987665 28889999988887764
No 9
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=7.3e-50 Score=422.15 Aligned_cols=313 Identities=19% Similarity=0.157 Sum_probs=267.8
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||++|||+ ++|+++++.|-+|+++.++|+++.++.++..++.|+++|||+||||||+|-|++.++...++++-
T Consensus 5 tt~VGS~prp---~~l~~~~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~-- 79 (339)
T PRK09121 5 TSTAGSLPKP---SWLAEPETLWSPWKLQGEELIEGKQDALRLSLQEQEDAGIDIVSDGEQTRQHFVTTFIEHLSGVD-- 79 (339)
T ss_pred CceecCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceeCCccccchHHHHHHHhCCCce--
Confidence 5788889999 99999999999999999999999999999999999999999999999999999999988877751
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
+. .+| . .+.+ +|++|..|.++|+..+ ..+..+++|++++++ +.++|.+||||+|
T Consensus 80 ~~--------------~~~-------~-~~~~-~~~~~~~p~v~G~i~~--~~~~~~~~~~~~~~~~~~~vK~~ipgP~t 134 (339)
T PRK09121 80 FE--------------KRE-------T-VRIR-DRYDASVPTVVGAVSR--QKPVFVEDAKFLRQQTTQPIKWALPGPMT 134 (339)
T ss_pred ee--------------cCC-------c-ceec-ccccCCCCEEEEecCC--CCCCcHHHHHHHHhccCCCceEEeCcHHH
Confidence 00 011 1 1445 8889999999997664 457788999999987 5779999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEE
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l 240 (595)
++.++.+ +.| .+.++++.+|+.+|++++++|+++||++||||||+|.+.. .+..+...++++...++.+ ..+.+
T Consensus 135 l~~~~~~-~~Y---~~~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~-~~~~~~~v~~~n~~~~g~~-~~v~~ 208 (339)
T PRK09121 135 MIDTLYD-DHY---KSREKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFF-DEVNDWGVAALERAIEGLK-CETAV 208 (339)
T ss_pred HHHHhcc-ccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhh-HHHHHHHHHHHHHHHcCCC-CceEE
Confidence 9988875 566 4789999999999999999999999999999999999633 3346777778887777665 67889
Q ss_pred EeccCCCC-----------------cccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCH
Q 007631 241 ETYFADVP-----------------AETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDL 303 (595)
Q Consensus 241 ~tyfg~~~-----------------~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~ 303 (595)
|+|||+.. +.+++.|.++ +||+|+|||++...+++.+.. + ++|.|++||||+||+.+|++
T Consensus 209 HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~-~vd~~~lE~~~~r~~~~~l~~-~-~~~~v~lGvvd~k~~~lE~~ 285 (339)
T PRK09121 209 HICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKS-NIDIISLECHNSRVPMDLLEL-I-RGKKVMVGAIDVASDTIETP 285 (339)
T ss_pred EEeCCCCCCCccccccccccccccHHHHHHHHHhC-CCCEEEEEecCCCCCcHHHHh-c-ccCeEEeeeEeCCCCCCCCH
Confidence 99998541 2348889999 999999999986657777663 4 67899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 304 ASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 304 ~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
+++++||++++++++++||||||||||..+|.+ -|.+||.-|+..++.++
T Consensus 286 e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~----------------~a~~KL~~l~~~a~~~~ 335 (339)
T PRK09121 286 EEVADTLRKALQFVDADKLYPCTNCGMAPLSRD----------------VARGKLNALSAGAEIVR 335 (339)
T ss_pred HHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987665 58899999988876654
No 10
>PRK04326 methionine synthase; Provisional
Probab=100.00 E-value=9.2e-50 Score=421.04 Aligned_cols=309 Identities=21% Similarity=0.294 Sum_probs=264.4
Q ss_pred ceeec-cCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCC
Q 007631 2 ASHVV-GYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (595)
Q Consensus 2 ~t~v~-GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (595)
.|+++ +|||+ ++||+|+++||+|+++.++|.+..+++++.+|+.|+++|+|+||||||||.|++
T Consensus 10 ~~t~vGS~Prp---~~l~~a~~~~~~g~~~~~~l~~~~~~a~~~~v~~q~~~Gld~itdGe~~r~~~~------------ 74 (330)
T PRK04326 10 PTTVVGSYPKP---KWLREAIRLHKAGKISEEDLHEAFDDAVRLVVKDHERAGVDIPVDGEMRREEMV------------ 74 (330)
T ss_pred cCccccCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCeEEcHhHH------------
Confidence 34555 59999 889999999999999999999999999999999999999999999999997754
Q ss_pred cccCCCCCcccchhhhhhc-CCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc--CCCCceEeeh
Q 007631 81 RYSWNGGEIGFDVYFSMAR-GNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL--GMETVPVLVG 157 (595)
Q Consensus 81 rf~~~~~~~~l~~yFa~aR-G~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~--g~~~K~vl~G 157 (595)
.||.+++ |. ....-+||||||| |++|+++++ ++..++.+++++++++++ +.++|++|+|
T Consensus 75 ------------~~f~~~~~G~---~~~~~~~~~~~~~-~~~P~v~g~--~~~~~~~~l~~~~~~~~~~~~~~vk~~l~G 136 (330)
T PRK04326 75 ------------EYFAERIEGF---KFYGPVRVWGNNY-FRKPSVVGK--IEYKEPMLVDEFEFAKSVTYTRPVKVPITG 136 (330)
T ss_pred ------------HHHHHhCCce---eccCceecccccc-ccCCeEEEe--ccCCCCCcHHHHHHHHhcccCCCceEeccC
Confidence 3555555 42 1223478999999 999999885 455568899999999988 7899999999
Q ss_pred HHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCc
Q 007631 158 PVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLN 237 (595)
Q Consensus 158 P~T~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~ 237 (595)
|+|++.++.. ..| .+..+++.+|+++|++++++|.++||++||||||+|+.. .++.+.+..+|+.+.++.. ..
T Consensus 137 P~Tla~~~~~-~~y---~~~~e~~~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~--~~~~~~~~~~l~~~~~~~~-~~ 209 (330)
T PRK04326 137 PYTIAEWSFN-EYY---KDKEELVFDLAKVINEEIKNLVEAGAKYIQIDEPALATH--PEDVEIAVEALNRIVKGIN-AK 209 (330)
T ss_pred HHHHHhhccc-ccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCchhhcC--HHHHHHHHHHHHHHHhCCC-CE
Confidence 9999987763 455 367899999999999999999999999999999999974 3556888888888877553 57
Q ss_pred EEEEeccCCCCcccHHHHhcCCCccEEEEEeecCC-CChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhh
Q 007631 238 VLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGT 316 (595)
Q Consensus 238 i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~-~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~ 316 (595)
+.||+|||++.+. ++.+.++ +||+|++|++++. .+++.+++ .+.+|.|++||||++|+|++++++++++++++.+.
T Consensus 210 v~lH~C~G~~~~~-~~~l~~~-~vd~i~~d~~~~~~~~l~~~~~-~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~ 286 (330)
T PRK04326 210 LGLHVCYGDYSRI-APYILEF-PVDQFDLEFANGNYKLLDLLKE-YGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEY 286 (330)
T ss_pred EEEEEeCCCcHHH-HHHHHhC-CCCEEEEEeCCCCchhHHHhhc-cCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 8999999998876 9999999 9999999998743 46666654 22378999999999999999999999999999998
Q ss_pred cCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 317 VGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 317 ~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
++.++++|||||||.|+|++ -|.+||+-++..++.++
T Consensus 287 ~~~~~~~lsp~Cgl~~~~~~----------------~a~~kl~~l~~~a~~~~ 323 (330)
T PRK04326 287 VPPEKLYINPDCGLKLLPRE----------------IAYQKLVNMVKATREVR 323 (330)
T ss_pred CChhhEEECCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 88889999999999999875 48889998888887764
No 11
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=100.00 E-value=5.3e-49 Score=413.09 Aligned_cols=307 Identities=21% Similarity=0.250 Sum_probs=253.2
Q ss_pred CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCC
Q 007631 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (595)
Q Consensus 1 ~~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (595)
++|++++|||+ .++++|++.||+|+++.+++++..++++.++|+.|+++|+|+|||||| ||+|+|++..++..|+
T Consensus 1 ~~t~vGS~P~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~gl~~i~dge~--~~~~~~~~~~~~~~~~ 75 (321)
T cd03310 1 LATGIGSYPLP---DGVTKEWSILEKGAIEPEWPEEALFTALGSFFELQLEAGVEVPTYGQL--GDDMIGRFLEVLVDLE 75 (321)
T ss_pred CCCcccCCCCc---hhHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhhcCCcCCCccc--HHHHHhhHHHHHHHhh
Confidence 46888899999 999999999999999999999999999999999999999999999999 7999998877665543
Q ss_pred cccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHH
Q 007631 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (595)
Q Consensus 81 rf~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T 160 (595)
|| +|||+|||||++|++.+++ +.......++++++++..+.++|++|+||+|
T Consensus 76 ~~---------------------------~~~~~~n~~y~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~vk~~l~GP~T 127 (321)
T cd03310 76 TG---------------------------TRFFDNNFFYRPPEAKIEA-FLPLELDYLEEVAEAYKEALKVKVVVTGPLT 127 (321)
T ss_pred cc---------------------------cccccccceeccchhcccc-cccccHHHHHHHHHhcCCCCceEEEecCHHh
Confidence 21 7999999999999998876 5444445666666665556789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC--hHHHHHHHHHHHHHHcCCCCCcE
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD--SHKLQAFSDAYSELQSSLSGLNV 238 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~--~~~~~~~~~ay~~l~~~~~~~~i 238 (595)
++.+++...+| ..+..+++++|+++|++++++|.++||.|||||||+|+.++. ..+.+.+.++|+.+..+.. ..+
T Consensus 128 la~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~l~~~G~~~iqidEP~l~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~ 204 (321)
T cd03310 128 LALLAFLPNGE--PDAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAGAFEDLEIVDAALEEVSLKSG-GDV 204 (321)
T ss_pred HhHhhccccCC--chHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccccccccccchHHHHHHHHHHHhhccC-Cce
Confidence 99988853332 136789999999999999999999999999999999999875 5678999999999865221 234
Q ss_pred EEEeccCCCCcccHHHHhcCCCccEEEEEeecCC----CChhhHhh-hCCCCcEEEEeEeeC----CCCCCC--CHHHHH
Q 007631 239 LIETYFADVPAETYKILTSLKGVTGFGFDLIRGT----KTLDLIKT-EFPLGKYLFAGVVDG----RNIWAN--DLASSL 307 (595)
Q Consensus 239 ~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~----~~l~~l~~-~~p~~k~l~lGVVdg----rn~w~e--d~~~~~ 307 (595)
.+|+|++ .. ++.+.++ ++|+|++|++++. +++..+.+ ++ .++.+++|+||+ ||+|++ ++++++
T Consensus 205 ~lHic~~---~~-~~~l~~~-~vd~l~~D~~~~~~~~~~~l~~~~~~g~-~~~~lg~gvid~~~~~~~~~~~~~~~~~~~ 278 (321)
T cd03310 205 EVHLCAP---LD-YEALLEL-GVDVIGFDAAALPSKYLEDLKKLLRIGV-RTLILGLVVTDNEAKGRNAWKEIERLEKLV 278 (321)
T ss_pred EEEECCC---CC-HHHHHhC-CCCEEEEecccCcccchhHHHHHHhcCC-ceEEEEeeecCCcccCCCHHHHHHHHHHHH
Confidence 5566655 34 8999999 9999999999864 67777654 23 678999999999 999998 666666
Q ss_pred HHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHH
Q 007631 308 TTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (595)
Q Consensus 308 ~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~ 366 (595)
++++.....+ .++++|+|||||.|+|++ -|.+||..|+.+++
T Consensus 279 ~~l~~~~~~~-~~~~~vtpscgL~~~p~~----------------~a~~kl~~l~~~a~ 320 (321)
T cd03310 279 RRLEEPGEVL-DEILYLTPDCGLAFLPPQ----------------EARRKLALLAEAAR 320 (321)
T ss_pred HHhccchhhh-hhceeeCCCccCCCCCHH----------------HHHHHHHHHHHHhh
Confidence 6666543323 378999999999999998 49999999988764
No 12
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=8.2e-48 Score=442.15 Aligned_cols=315 Identities=18% Similarity=0.202 Sum_probs=263.9
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||+||||+ .+|++|+++||+|+||.++|++..++.+.+.|+.|+++|||+||||||+|+|+|.++...++++-
T Consensus 430 tt~IGSfPrp---~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~Qe~~GlDvltdGE~~R~d~v~~F~~~l~Gf~-- 504 (758)
T PRK05222 430 TTTIGSFPQT---TEIRKARAAFKKGELSEEEYEAFIREEIARAIRLQEELGLDVLVHGEFERNDMVEYFGEQLDGFA-- 504 (758)
T ss_pred ccccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCceeeeehHHHHHHhCCCee--
Confidence 5788899999 99999999999999999999999999999999999999999999999999999999887776641
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
| ...+..+.|++. +|..|.+.|+..+ ..+..++++++|+++ +.++|++||||+|
T Consensus 505 ~----------------------~~~g~v~~~g~~-~~r~p~i~G~i~~--~~p~~v~~~~~aq~~t~~~vK~~ltGP~T 559 (758)
T PRK05222 505 F----------------------TQNGWVQSYGSR-CVKPPIIYGDVSR--PEPMTVEWIKYAQSLTDKPVKGMLTGPVT 559 (758)
T ss_pred e----------------------cCCceeeeeCCc-CCCCCeeeCCCcC--CCCCchHHHHHHHhccCCCCcEEEecHHH
Confidence 1 011223556544 4788999998665 333348999999998 7899999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCCh------HHHHHHHHHHHHHHcCCC
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS------HKLQAFSDAYSELQSSLS 234 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~------~~~~~~~~ay~~l~~~~~ 234 (595)
++.+|... .| .++.+++.+|+.+|++++++|+++||++||||||+|...++. +.++...++++...++.+
T Consensus 560 ~~~~s~~r-~~---~~~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~ 635 (758)
T PRK05222 560 ILNWSFVR-DD---QPREETARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVK 635 (758)
T ss_pred HHHHHhcc-cC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCC
Confidence 99999863 33 478999999999999999999999999999999999876541 234555666666555543
Q ss_pred -CCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCC-CChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHH
Q 007631 235 -GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQD 312 (595)
Q Consensus 235 -~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~-~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~ 312 (595)
..+|++|+|||++.++ ++.|.++ +||+|+||++++. +.|+.+.+ .+.++.|++||||+||+++|+++++.++|++
T Consensus 636 ~~~~i~tH~C~g~~~~i-~~~i~~l-~vD~~~lE~~rs~~e~L~~~~~-~~~~~~iglGVvd~~s~~ves~eei~~rI~~ 712 (758)
T PRK05222 636 DETQIHTHMCYSEFNDI-IDAIAAL-DADVISIETSRSDMELLDAFED-FGYPNEIGPGVYDIHSPRVPSVEEIEELLRK 712 (758)
T ss_pred CCCEEEEEEeccChHHH-HHHHHhC-CCCEEEEEecCCCchhHHHhhc-cCCCCeEEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 4789999999999987 9999999 9999999988743 44554443 3336789999999999999999999999999
Q ss_pred HHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 313 LAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 313 ~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
+++++|++||||||||||..+|++ =+.+||.-|+..++.++
T Consensus 713 a~~~v~~e~l~v~PdCGl~t~~~~----------------~~~~kL~~mv~aa~~~r 753 (758)
T PRK05222 713 ALEVIPAERLWVNPDCGLKTRGWE----------------ETIAALKNMVAAAKELR 753 (758)
T ss_pred HHHhCChheEEEeCCCCCcCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999997776 27889999988887664
No 13
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=2.5e-47 Score=406.94 Aligned_cols=322 Identities=14% Similarity=0.190 Sum_probs=254.1
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+||+++|||+ ++|++|+++|-+|+||.++|+++.++.+++.++.|+++|||+||||||+|.+|++|+...++++ ++
T Consensus 10 tt~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldvitDGE~rR~~w~~df~~~l~Gv-~~ 85 (368)
T PRK06520 10 ADVVGSFLRP---AAIKQARQQFAAGEIDAAALRKIEDMEIRKVVEKQRACGLKVVTDGEFRRAWWHFDFFDGLQGV-ER 85 (368)
T ss_pred cceeccCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccccceeeehhhhcCCe-ee
Confidence 4788889999 9999999999999999999999999999999999999999999999998765556887777775 22
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc--CCCCceEeehHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL--GMETVPVLVGPV 159 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~--g~~~K~vl~GP~ 159 (595)
|... .++ .++++|-.|..|.++|+..++ ..++++++|++++++ +.++|.+||||+
T Consensus 86 ~~~~---------------------~g~-~f~~~~~~~~~~~v~G~I~~~-~~~~~~~~~~~l~~~~~~~~~K~~ipgP~ 142 (368)
T PRK06520 86 YEAE---------------------QGI-QFNGVQTKARGVRVTGKLDFP-DDHPMLEDFRFLKSISGDATPKMTIPSPS 142 (368)
T ss_pred eccc---------------------Cce-eecCcccccCCeEEEEEecCC-CCCchHHHHHHHHhhccCCCCCEEcCcHH
Confidence 3210 011 133445557789999977663 247789999999987 457899999999
Q ss_pred HHhhh-----ccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChH----------H----HH
Q 007631 160 SYLLL-----SKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH----------K----LQ 220 (595)
Q Consensus 160 T~l~l-----sk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~----------~----~~ 220 (595)
|++++ +.+ ++| .+.++++.||+.+|++++++|+++||++||||||+|++-++.. + .+
T Consensus 143 ~l~~~~~~~~~~~-~~Y---~~~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~ 218 (368)
T PRK06520 143 VLHFRGGRKAIDA-TVY---PDLDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELAR 218 (368)
T ss_pred HHHhhccccccch-hcC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHH
Confidence 99854 333 456 4789999999999999999999999999999999998733211 2 23
Q ss_pred HHHHHHHHHHcCCC-CCcEEEEeccCCCC----------cccHHHH-hcCCCccEEEEEeec-CCCChhhHhhhCCC-Cc
Q 007631 221 AFSDAYSELQSSLS-GLNVLIETYFADVP----------AETYKIL-TSLKGVTGFGFDLIR-GTKTLDLIKTEFPL-GK 286 (595)
Q Consensus 221 ~~~~ay~~l~~~~~-~~~i~l~tyfg~~~----------~~v~~~l-~~l~pvd~i~lD~~~-~~~~l~~l~~~~p~-~k 286 (595)
.+.++++.+.++.| .+.|.+|+|||++. +. ++.| .++ +||+++|||++ +.+.+++|.. ++. +|
T Consensus 219 ~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i-~~~L~~~~-~vd~~~lE~~~~r~g~~e~L~~-l~~~~k 295 (368)
T PRK06520 219 IYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPV-AETLFGGV-NVDAFFLEYDNERAGGFEPLRF-IPPGHQ 295 (368)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHH-HHHHHhhc-CCCeEEEEeccCCCCCcchHHH-hhhcCC
Confidence 44467776666554 35567799999864 55 8886 479 99999999986 4577787764 543 67
Q ss_pred EEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHH
Q 007631 287 YLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (595)
Q Consensus 287 ~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~ 366 (595)
.|++||||++++.+|+++++++||+++++++|++||||||||||...-- -..|+.+ -|.+||.=|+.+|+
T Consensus 296 ~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~----~~~l~~~------~~~~KL~~l~~~a~ 365 (368)
T PRK06520 296 QVVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCGFASTEE----GNSLSEE------QQWAKLRLVVEIAN 365 (368)
T ss_pred EEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccCCCcccc----CCCCCHH------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999993210 0012222 48889988888775
Q ss_pred H
Q 007631 367 A 367 (595)
Q Consensus 367 ~ 367 (595)
.
T Consensus 366 ~ 366 (368)
T PRK06520 366 E 366 (368)
T ss_pred H
Confidence 4
No 14
>PRK06233 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-46 Score=396.80 Aligned_cols=323 Identities=18% Similarity=0.214 Sum_probs=251.9
Q ss_pred eeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCcc
Q 007631 3 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRY 82 (595)
Q Consensus 3 t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~rf 82 (595)
+|+++|||+ ++|++|+++|-+|+++.++|+++.++.+++.++.|+++|||+||||||+|.|+++|+...|+++-. |
T Consensus 12 ~~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~~-~ 87 (372)
T PRK06233 12 DIVGSFLRP---ERLKEAREQFAIGEISQDQLLKIQHAEIKRLVKEQVELGLKAVTDGEFNRSWWHLDFLWGLNGVGK-Y 87 (372)
T ss_pred ceEeeCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCcCCccHHHHHHhhcCceEe-e
Confidence 678889999 999999999999999999999999999999999999999999999999998888999999888621 1
Q ss_pred cCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc---CCCCceEeehHH
Q 007631 83 SWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL---GMETVPVLVGPV 159 (595)
Q Consensus 83 ~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~---g~~~K~vl~GP~ 159 (595)
.. ..++.+ .| .+--|..|.++++..+. ..++++++|+++++. +.++|.+||||+
T Consensus 88 ~~-------~~~~~~-~~--------------~~~~~~~~~v~g~i~~~-~~~p~~~~~~~~~~~~~~~~~~K~tipgP~ 144 (372)
T PRK06233 88 EY-------EDSYKF-HG--------------AKTRTDNAELAGKVAFN-PDHPFFAAFKYLKSIVPEGVLPKQTIPSPS 144 (372)
T ss_pred cC-------cceeee-cC--------------CcCCCCCCEEEEeeccC-CCCchHHHHHHHHhhhcCCCceEEEecCcH
Confidence 10 011100 01 00124458888876553 246789999999987 356799999999
Q ss_pred HHhhhccC---CCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC---h---------HHHH---H
Q 007631 160 SYLLLSKP---AKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD---S---------HKLQ---A 221 (595)
Q Consensus 160 T~l~lsk~---~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~---~---------~~~~---~ 221 (595)
|++.++.. .++| .+.++++.||+.+|++++++|+++||++||||||+|++... . +..+ .
T Consensus 145 ~l~~~~~~~~~~~~Y---~~~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
T PRK06233 145 LLFRDNRSDNWPKFY---DSWDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAED 221 (372)
T ss_pred HhccCcccccccccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHH
Confidence 99854321 2456 47899999999999999999999999999999999875211 0 1222 3
Q ss_pred HHHHHHHHHcCCC-CCcEEEEeccCCCC----------cccHHHHhcCCCccEEEEEeec-CCCChhhHhhh--CCCCcE
Q 007631 222 FSDAYSELQSSLS-GLNVLIETYFADVP----------AETYKILTSLKGVTGFGFDLIR-GTKTLDLIKTE--FPLGKY 287 (595)
Q Consensus 222 ~~~ay~~l~~~~~-~~~i~l~tyfg~~~----------~~v~~~l~~l~pvd~i~lD~~~-~~~~l~~l~~~--~p~~k~ 287 (595)
+.++++....+.| ++.|.+|.|+|++. +. ++.|.++ +||+|+|||++ +.+++++|... .|.+|.
T Consensus 222 ~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i-~~~l~~~-~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~ 299 (372)
T PRK06233 222 AVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPV-AKYLGQL-NYDGFFLEYDNDRSGSFEPLKQIWNNRDNVR 299 (372)
T ss_pred HHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHH-HHHHHhC-CCCEEEEecCCCccCccchHHHhhccCCCCE
Confidence 3346666655544 45778899999775 54 8999999 99999999987 45889888751 233799
Q ss_pred EEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHH
Q 007631 288 LFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (595)
Q Consensus 288 l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~ 367 (595)
|++||||+++..+|+++++++||+++++++|++||||||||||... . .-..|+++ -|.+||.=|+.+++-
T Consensus 300 v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~--~--~g~~l~~~------~~~~KL~~l~~~a~~ 369 (372)
T PRK06233 300 IVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCGFAST--E--EGNILTEA------DQWAKLALVKKIADK 369 (372)
T ss_pred EEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCccc--c--ccCCCCHH------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999932 1 00123333 478898888777653
No 15
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=100.00 E-value=2.8e-46 Score=394.75 Aligned_cols=311 Identities=22% Similarity=0.214 Sum_probs=260.3
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+||+++|||+ ++|++|+++|.+|+++.++|+++.+++++..++.|+++|||+||||||+|.|++.++...++++-
T Consensus 2 tt~vGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~v~~Q~~~GldiitDGe~~r~~~~~~f~~~l~G~~-- 76 (332)
T cd03311 2 TTTVGSFPRP---KELREARAKFKKGEISAEELREAEDDAIADAVKDQEEAGLDVVTDGEFRRSDMVEYFLERLDGFE-- 76 (332)
T ss_pred CceecCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccccHHHHHHHhCCcee--
Confidence 6889999999 99999999999999999999999999999999999999999999999999999988887766641
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcC--CCCceEeehHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALG--METVPVLVGPV 159 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g--~~~K~vl~GP~ 159 (595)
..+..+.+ .|..|..|.+.++... ..+..+.+++.+++.. .++|++++||+
T Consensus 77 ------------------------~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lk~~l~GP~ 129 (332)
T cd03311 77 ------------------------FTGWVQSY-GSRYYKPPGIVGDVSR--RPPMTVEEGKIAQSLTHPKPLKGILTGPV 129 (332)
T ss_pred ------------------------eccceeee-ccceeeCCeeeccccc--CCCCeEEEEEEeccCCCCccccccCCCCe
Confidence 01123444 3445788887764322 2344555666666542 67899999999
Q ss_pred HHhhhccCCC--CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCCh----HHHHHHHHHHHHHHcCC
Q 007631 160 SYLLLSKPAK--GVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS----HKLQAFSDAYSELQSSL 233 (595)
Q Consensus 160 T~l~lsk~~~--~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~----~~~~~~~~ay~~l~~~~ 233 (595)
|++.++.+.. .| .+..+++++|+.+|++++++|+++||++||||||+|+..++. ...+.+..+++.+....
T Consensus 130 Tla~~~~~~~~~~y---~~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (332)
T cd03311 130 TIPSPSFVRFRGYY---PSREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRP 206 (332)
T ss_pred eECCchhhcccccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCC
Confidence 9998877422 14 478899999999999999999999999999999999887654 45677888888886523
Q ss_pred CCCcEEEEeccCCC----------CcccHHHHhcCCCccEEEEEeecC-CCChhhHhhhCCCCcEEEEeEeeCCCCCCCC
Q 007631 234 SGLNVLIETYFADV----------PAETYKILTSLKGVTGFGFDLIRG-TKTLDLIKTEFPLGKYLFAGVVDGRNIWAND 302 (595)
Q Consensus 234 ~~~~i~l~tyfg~~----------~~~v~~~l~~l~pvd~i~lD~~~~-~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed 302 (595)
.+..+.+|+|||+. .+. ++.|.++ +||+|++|+++. .++++.+.. ++.+|.|++||||++|+++|+
T Consensus 207 ~~~~v~lHiC~G~~~~~~~~~~~y~~i-~~~l~~~-~vd~~~le~~~~~~~~~~~l~~-~~~~k~l~~GvVd~~~~~~e~ 283 (332)
T cd03311 207 DDTQIHTHICYGNFRSTWAAEGGYEPI-AEYIFEL-DVDVFFLEYDNSRAGGLEPLKE-LPYDKKVGLGVVDVKSPEVES 283 (332)
T ss_pred CCCEEEEEEECCCCcccccccCcHHHH-HHHHHhC-CCCEEEEEEcCCCCcchHHHHh-CCCCCEEEeeeecCCCCCCCC
Confidence 34688999999988 565 8999999 999999999984 578999976 777999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHH
Q 007631 303 LASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (595)
Q Consensus 303 ~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~ 366 (595)
+++++++|+++.++++.++++|||||||.++|.+ -|.+||+.++.+++
T Consensus 284 ~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~----------------~a~~kl~~~~~~~~ 331 (332)
T cd03311 284 PEEVKDRIEEAAKYVPLEQLWVSPDCGFATRERG----------------NALTKLENMVKAAL 331 (332)
T ss_pred HHHHHHHHHHHHhhCCHHHEEECCCCCCCcCCCc----------------hhHHHHHHHHHHhh
Confidence 9999999999999998899999999999999995 58888888877753
No 16
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=2.2e-45 Score=420.10 Aligned_cols=316 Identities=16% Similarity=0.145 Sum_probs=267.4
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||++|||+ .+|++|+.+|-+|+|+.+++++..++.+++.++.|+++|||+||||||+|.|+|.++...++++-
T Consensus 435 tT~IGSfPrp---~~lr~ar~~~~~G~i~~e~~~~~~~~aI~~~V~~Qe~~GlDvltdGE~~R~dmv~~F~e~L~Gf~-- 509 (766)
T PLN02475 435 TTTIGSFPQT---VELRRVRREYKAKKISEEDYVKAIKEEIAKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA-- 509 (766)
T ss_pred CccccCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeecCceeccchHHHHHHhCCCee--
Confidence 5788889999 99999999999999999999999999999999999999999999999999999998887776641
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
| +..+..+.|++.| |+.|.+.|+.++ ..+..++++++|+++ +.++|++||||+|
T Consensus 510 ~----------------------~~~g~v~~~g~~~-~r~p~i~G~I~~--~~~~~v~~~~~aq~~t~~~vK~~ltGP~T 564 (766)
T PLN02475 510 F----------------------TANGWVQSYGSRC-VKPPIIYGDVSR--PKAMTVFWSSVAQSMTKRPMKGMLTGPVT 564 (766)
T ss_pred e----------------------cCCceEEeeCCcC-CCCCeEeccccC--CCCCCHHHHHHHHhccCCccceEEecHHH
Confidence 0 0113345565544 678999997665 567899999999988 5789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC------hHHHHHHHHHHHHHHcCC-
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD------SHKLQAFSDAYSELQSSL- 233 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~------~~~~~~~~~ay~~l~~~~- 233 (595)
++.+|.+ .+| .++.+++.+|+.+|++++++|+++||++||||||+|...++ .+.++...++++....+.
T Consensus 565 i~~~s~~-r~~---~~~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~v~ 640 (766)
T PLN02475 565 ILNWSFV-RND---QPRHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQ 640 (766)
T ss_pred HHhhhhc-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhcCC
Confidence 9999886 344 47899999999999999999999999999999999987543 123344445555544433
Q ss_pred CCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCC-CChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHH
Q 007631 234 SGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQD 312 (595)
Q Consensus 234 ~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~-~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~ 312 (595)
+..+|++|+|||++.++ ++.|.++ +||+|++|+.++. +.|+.++..++.+|.|++||||.|++.+|+++++.++|++
T Consensus 641 ~~~~I~~H~C~gnf~~I-~~~i~~l-~~D~~~~E~~rs~~~~l~~l~~~~~~~~~IglGViD~~s~~ves~Eei~~rI~~ 718 (766)
T PLN02475 641 DTTQIHTHMCYSNFNDI-IHSIIDM-DADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINK 718 (766)
T ss_pred CCCEEEEEEecCCcHHH-HHHHHhC-CCCEEEEEcCCCChhhhHHHHhhcCCCCeEEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 35689999999999986 9999999 9999999998754 4588886546778899999999999999999999999999
Q ss_pred HHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 313 LAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 313 ~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
+++++|++||||||||||...++. -+.+||.-|+.-++.++
T Consensus 719 a~~~v~~e~l~vnPDCGl~tr~~~----------------~~~~kL~~mv~aa~~~r 759 (766)
T PLN02475 719 MLAVLESNILWVNPDCGLKTRKYP----------------EVKPALKNMVAAAKLLR 759 (766)
T ss_pred HHHhCCcceEEEcCCCCcccCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776 36779999988887765
No 17
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-45 Score=381.56 Aligned_cols=315 Identities=20% Similarity=0.259 Sum_probs=274.5
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|++++|||+ .+|++|+++|-+|+++.+++.+..++.+...++.|+++|||+++||+|.|+|+|-+++..++++-
T Consensus 7 tt~iGSfPr~---~~l~~a~~~~~~G~i~~ee~~~~~~~~i~~~i~~q~~~Gldv~v~Ge~~r~Dmv~~F~e~l~G~~-- 81 (330)
T COG0620 7 TTVIGSFPRP---EELRKAREKWKKGEISEEEYEEILREAIRRAIKDQEEAGLDVLVDGEFERNDMVEYFAEKLDGVK-- 81 (330)
T ss_pred ccccCCCCCC---hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEecCCceeecHHHHHHHHHcCCee--
Confidence 5778889999 99999999999999999999999999999999999999999999999999999987776665541
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
.+..++.+.|++ ..|+.|++.|+..+ ..+++++++.+++++ ..++|.+||||+|
T Consensus 82 ----------------------~~~~~~v~~~~~-~~~r~p~i~g~v~~--~~~~~v~~~~~a~~~~~~~~K~~ltGP~t 136 (330)
T COG0620 82 ----------------------FTQNGWVRSYGS-RCYRPPIIIGDVSR--PEPMTVEEFLYAQSLTEKPVKGMLTGPVT 136 (330)
T ss_pred ----------------------eccCCcEEEecc-EEeeCceEeccccc--CCCCcchhhhhhhhccCccceeeeccHHh
Confidence 124577888998 88999999998766 568899999999986 4789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC----hHHHHHHHHHHHHHHcCC-CC
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD----SHKLQAFSDAYSELQSSL-SG 235 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~----~~~~~~~~~ay~~l~~~~-~~ 235 (595)
++.+|.+ .+| .++.+++.+++.+|++++++|.++||++||||||+|...++ ++.++.+..+++....+. .+
T Consensus 137 i~~~s~~-~~~---~~~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d 212 (330)
T COG0620 137 ILLWSFN-RYY---ISREELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRRDDDYLEWAVEAINLAAAGVGAD 212 (330)
T ss_pred hHhhhcc-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCccccchHHHHHHHHHHHHHHhcCCCC
Confidence 9999986 344 48899999999999999999999999999999999987643 235677777777666542 35
Q ss_pred CcEEEEeccCCCCcccHHHHhcCCCccEEEEEeec-CCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHH
Q 007631 236 LNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR-GTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLA 314 (595)
Q Consensus 236 ~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~-~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~ 314 (595)
.+||+|.|++++.+. .+.+..+ ++|++.++..+ +.+.++.+.. +..++.+++||||.|++.+|+.+++.++|++++
T Consensus 213 ~~i~~HiCy~e~~~~-~~~i~~l-d~dv~~~e~~~s~~~~~~~~~~-~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~ 289 (330)
T COG0620 213 TQIHLHICYSEFNDI-PDAIEAL-DADVIDIETSRSRMELLEVLEE-VKYDKEIGLGVVDIHSPKVESVEEIAARIRKAL 289 (330)
T ss_pred cEEEEEEECCcccch-hHHHhhc-CCcEEeeeccccccchhHHHHh-ccCCCeeecceEecCCCCcCCHHHHHHHHHHHH
Confidence 899999999998886 8999999 99999999998 4567777765 557899999999999999999999999999999
Q ss_pred hhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 315 GTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 315 ~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
+.++++++||+|||||..+|++ -|.+||.-|+..++.++
T Consensus 290 ~~~~~e~~~vnPDCGl~~~~~~----------------~a~~kL~nmv~a~~~~r 328 (330)
T COG0620 290 ERVPPERLYVNPDCGLKTLPRE----------------IAEAKLENMVKAAKEIR 328 (330)
T ss_pred HhCChheEEEcCCCCcccCcHH----------------HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999965 47888888888877654
No 18
>PRK01207 methionine synthase; Provisional
Probab=100.00 E-value=3.4e-43 Score=367.60 Aligned_cols=306 Identities=14% Similarity=0.186 Sum_probs=252.2
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcc-CCCCcccchhhhhHHHhhCCCCC
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFI-PSNTFSYYDQVLDTTAMLGAVPP 80 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~I-tdGefs~yD~vLD~~~~~g~ip~ 80 (595)
+|++++||++ ++++++. ++++. .+++.+...+.++..++.|+++|||+| +||++.|.| |.+
T Consensus 6 TT~iGS~P~p---~~~~~~~---~~~~~-~~~~~e~~~~ai~~~v~~Qe~aGlDiv~~dGe~~R~d-mv~---------- 67 (343)
T PRK01207 6 TQEIGSFRKP---EYLSREF---HKIEG-TDKFYELAERATLETLDVFENAGLDNIGIGGEMFRWE-MYE---------- 67 (343)
T ss_pred ccccCCCCCC---HHHHHHH---hccCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEeeCCcEeech-HHH----------
Confidence 4566669999 8877666 55655 577777777799999999999999999 799999977 432
Q ss_pred cccCCCCCcccchhhhhh-cCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehH
Q 007631 81 RYSWNGGEIGFDVYFSMA-RGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGP 158 (595)
Q Consensus 81 rf~~~~~~~~l~~yFa~a-RG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP 158 (595)
||+-. .| +...++.+.|+++ +|..|.+.++... ..+..++++++|+++ ..++|.+||||
T Consensus 68 -------------~f~~~l~G---~~~~g~vr~y~~~-~~r~Pii~g~i~~--~~~~~v~e~~~a~~~t~kpvK~~ltGP 128 (343)
T PRK01207 68 -------------HPAERIKG---IIFYGMVRSFDNR-YYRKGSIIDRMER--RSSFHLDEVEFVADNTKKPIKVPITGP 128 (343)
T ss_pred -------------HHHHhcCC---eEecCeEEEeccc-cccCCeEEeeccC--CCCCcHHHHHHHHHccCCCcEEEecCH
Confidence 22222 23 2335678889985 5999999997654 467899999999998 57899999999
Q ss_pred HHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHc------CCC-eEEeeccccccCCChHHHHHHHHHHHHHHc
Q 007631 159 VSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAA------GAT-WIQFDEPTLVLDLDSHKLQAFSDAYSELQS 231 (595)
Q Consensus 159 ~T~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~a------G~~-~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~ 231 (595)
+|++.||.+ ++| .++.+++.+|+.+.++++++|.++ ||. +||||||+|... .++++.+.++++....
T Consensus 129 ~Ti~~~S~~-~~Y---~~~~el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal~~~--~~~l~~av~a~n~~~~ 202 (343)
T PRK01207 129 YTMMDWSFN-DFY---RDRYDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPATTTH--PDEMDIVVDSINKSVY 202 (343)
T ss_pred HHHHHHhcc-ccc---CCHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCcCCC--hHHHHHHHHHHHHHHh
Confidence 999999986 566 589999999999999999999999 998 699999999864 3466667788887777
Q ss_pred CCCCCcEEEEeccC-CCCcccHHHHhcCCCccEEEEEeecCC--------------CChhhHhh---hCCCCcEEEEeEe
Q 007631 232 SLSGLNVLIETYFA-DVPAETYKILTSLKGVTGFGFDLIRGT--------------KTLDLIKT---EFPLGKYLFAGVV 293 (595)
Q Consensus 232 ~~~~~~i~l~tyfg-~~~~~v~~~l~~l~pvd~i~lD~~~~~--------------~~l~~l~~---~~p~~k~l~lGVV 293 (595)
+.+ .++++|+||| ++.+. ++.|.++ ++|+|++|++++. .+++.+.. .++.++.|++||+
T Consensus 203 gv~-~~i~~H~C~g~~~~~i-~~~i~~~-~~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV~ 279 (343)
T PRK01207 203 GID-NEFSIHVCYSSDYRLL-YDRIPEL-NIDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGVT 279 (343)
T ss_pred CCC-CcEEEEEEcCCChHHH-HHHHHhC-CCCEEEEEeccCcccccccccccccchhHHHHHHhhccccCCCCeEEeeEE
Confidence 665 4799999999 78776 9999999 9999999999543 35666643 2446678999999
Q ss_pred eCCCCCCCCHHHHHHHHHHHHhhc-CCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 294 DGRNIWANDLASSLTTLQDLAGTV-GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 294 dgrn~w~ed~~~~~~~i~~~~~~~-~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
|.|++.+|+++++.++|+++++++ |+++|||+|||||...|++ -|.+||.-|+..++.++
T Consensus 280 D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~----------------~a~~KL~~mv~aa~~~r 340 (343)
T PRK01207 280 DVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSRE----------------IGEQKLRNMVAAKNNIL 340 (343)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 7999999999999998875 48899999888877654
No 19
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=100.00 E-value=9.1e-43 Score=366.96 Aligned_cols=311 Identities=22% Similarity=0.268 Sum_probs=236.5
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
||+|++|||+ ++|++|+++|-+|+++.++|++.+++++++.++.|+++|||+||||||++.|++.++...+.++ .
T Consensus 3 TT~VGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~V~~Q~~~GldvitDGE~~R~~~~~~f~~~l~G~-~- 77 (324)
T PF01717_consen 3 TTVVGSFPRP---EELKEAREAFAKGEISPEELEEIEDEAIADAVKRQEDAGLDVITDGEFRRGDFHSYFAERLDGF-G- 77 (324)
T ss_dssp BB-SSB---S---HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHT-SCBE-BTTT-SSTTHHHHTTSEEE-E-
T ss_pred CcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceecceeccCchhhhhhhhccCc-e-
Confidence 6788889999 9999999999999999999999999999999999999999999999999988888887655544 1
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
+. .. +...-|.+ .++..|.+.++ +....+..++++.+++.. ..++|.+++||+|
T Consensus 78 ~~--------------~~--------~~~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~vK~~i~gP~t 132 (324)
T PF01717_consen 78 DT--------------LN--------GDVQSFGE-RYYRPPIVVGK--ISRKKPFAVEEFKYAQSLTDKPVKGTITGPST 132 (324)
T ss_dssp EE--------------SS--------EEEEEETT-EEEEEEEEEEE--EEESS-SSHHHHHHHHHT-SSSBEEEEE-HHH
T ss_pred ee--------------cc--------ccceeccc-ccccceEEecc--cccCCcchhHHHHHHHhccccccccccCHHHH
Confidence 10 00 11112332 23567777775 334567788999999877 4568999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHH---HHHH-----HHHHHHHHcC
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHK---LQAF-----SDAYSELQSS 232 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~---~~~~-----~~ay~~l~~~ 232 (595)
++..+.. ..| .+..+++.+|+.+|+++++.|+++||++||||||+|....+... ...+ ..+.+.....
T Consensus 133 l~~~~~~-~~y---~~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (324)
T PF01717_consen 133 LADPSAN-RYY---KDREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAVKG 208 (324)
T ss_dssp HHHTSEE-SSS---S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hhchhcc-ccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhccCC
Confidence 9888775 344 48899999999999999999999999999999998876543221 1111 2222222222
Q ss_pred CCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCC-CChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHH
Q 007631 233 LSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQ 311 (595)
Q Consensus 233 ~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~-~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~ 311 (595)
.+..+.+|+|+|++... ++.|.++ +||+++||+++.. ++++.|++ ++.+|.|++||||+++..+|++++++++|+
T Consensus 209 -~~~~v~~H~C~~~~~~~-~~~l~~~-~vd~~~lE~~~~~~~~l~~l~~-~~~~k~v~lGvv~~~~~~vE~~e~v~~ri~ 284 (324)
T PF01717_consen 209 -EDATVGVHVCRGNYPSI-LPLLADL-NVDAFFLEFADRRAGDLEPLRE-LPSGKKVVLGVVDTKSPEVESPEEVADRIE 284 (324)
T ss_dssp -TTSEEEEEESSSCHCTT-HHHHHCS-S-SEEEEEETSSTTGGGHHCHC-TTTTSEEEEEES-TTSSS--THHHHHHHHH
T ss_pred -CCCEEEEEecCccchhh-HHHHhhc-ccceEEeecccCCcccHHHHHh-CcCCceEEEEEEcCCCCCcCCHHHHHHHHH
Confidence 34788999999988765 7899999 9999999999854 89999987 899999999999999999999999999999
Q ss_pred HHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHH
Q 007631 312 DLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (595)
Q Consensus 312 ~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~ 366 (595)
++.++++++||++||||||..++.+ -|.+||.-++..|+
T Consensus 285 ~a~~~~~~~~l~~sPdCGfa~~~~~----------------~a~~kL~~~v~aa~ 323 (324)
T PF01717_consen 285 EALEYVPLEQLWLSPDCGFASLTRE----------------EARAKLRNMVEAAR 323 (324)
T ss_dssp HHHTTS-GGGEEEEESSTSTTS-HH----------------HHHHHHHHHHHHHH
T ss_pred HHHhcCccccEEEcCCCCCCCCCHH----------------HHHHHHHHHHHHHc
Confidence 9999999999999999999987655 58899998887764
No 20
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-43 Score=368.06 Aligned_cols=163 Identities=56% Similarity=0.874 Sum_probs=159.7
Q ss_pred CCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCc
Q 007631 428 NLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGF 507 (595)
Q Consensus 428 ~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~ 507 (595)
++|+||||+|||||||++|+++|.+|++|+++.++|+++++++|+++|+.|+++|||++|||||+|+|||+||+++|+||
T Consensus 1 ~~~~~~tt~iGSfPr~~~l~~a~~~~~~G~i~~ee~~~~~~~~i~~~i~~q~~~Gldv~v~Ge~~r~Dmv~~F~e~l~G~ 80 (330)
T COG0620 1 KLPLLPTTVIGSFPRPEELRKAREKWKKGEISEEEYEEILREAIRRAIKDQEEAGLDVLVDGEFERNDMVEYFAEKLDGV 80 (330)
T ss_pred CCCcCcccccCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEecCCceeecHHHHHHHHHcCCe
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceeeeccHHHHHhhhcCCCCCCChhHHHHHHHHH
Q 007631 508 AFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVN 587 (595)
Q Consensus 508 ~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~lpgP~ti~~~s~~~~y~~~~~~~~~diA~a 587 (595)
.++.+|||||||++|+++|+|+|+|+++.||+++|+.|+|+++.+|+|+|||||+||+.|||+++|.+++ ++++|||+|
T Consensus 81 ~~~~~~~v~~~~~~~~r~p~i~g~v~~~~~~~v~~~~~a~~~~~~~~K~~ltGP~ti~~~s~~~~~~~~~-el~~~iA~a 159 (330)
T COG0620 81 KFTQNGWVRSYGSRCYRPPIIIGDVSRPEPMTVEEFLYAQSLTEKPVKGMLTGPVTILLWSFNRYYISRE-ELAKDIALA 159 (330)
T ss_pred eeccCCcEEEeccEEeeCceEecccccCCCCcchhhhhhhhccCccceeeeccHHhhHhhhccccCCCHH-HHHHHHHHH
Confidence 9989999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhh
Q 007631 588 LRIF 591 (595)
Q Consensus 588 ~r~~ 591 (595)
||+.
T Consensus 160 l~~e 163 (330)
T COG0620 160 LRDE 163 (330)
T ss_pred HHHH
Confidence 9974
No 21
>PRK00957 methionine synthase; Provisional
Probab=100.00 E-value=1.5e-40 Score=347.40 Aligned_cols=294 Identities=17% Similarity=0.185 Sum_probs=235.0
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
||.|++||++ +++.+. +|..-.+.+.+++..+++++..++.|+++|||+|||||||+ |++.++...++++
T Consensus 4 t~~vgs~p~~---~~~~~~---~~~~~~~~~~~~~~~~~ai~~~v~~q~~~Gld~vtdGe~r~-~~~~~f~~~l~G~--- 73 (305)
T PRK00957 4 TTVVGSYPVV---KGEPET---LKDKIKGFFGLYDPYKPAIEEAVADQVKAGIDIISDGQVRG-DMVEIFASNMPGF--- 73 (305)
T ss_pred cceecCCCCC---ccchhH---HHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCccC-chHHHHHhcCCCc---
Confidence 4556669999 554333 23333677889999999999999999999999999999975 5567665433332
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc------CCCCceEe
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL------GMETVPVL 155 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~------g~~~K~vl 155 (595)
. | |.+.++..+. +.+.++++|++++++ +.++|++|
T Consensus 74 --------------------~-------------~-----~~vvg~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~vK~~i 114 (305)
T PRK00957 74 --------------------D-------------G-----KRVIGRVEPP-AKPITLKDLKYAKKVAKKKDPNKGVKGII 114 (305)
T ss_pred --------------------c-------------C-----CeEEEeecCC-CCCCcHHHHHHHHHHHhccCCCCceeEEe
Confidence 0 1 2333543332 147899999999976 35799999
Q ss_pred ehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCC
Q 007631 156 VGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSG 235 (595)
Q Consensus 156 ~GP~T~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~ 235 (595)
+||+|++.++.....|. .....+++.+|+++|++++++|+++||++||||||+|+.++. ..+.+..+|+.+.++.+
T Consensus 115 ~GP~Tla~~~~~~~~y~-~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~--~~~~~~~~~~~~~~~i~- 190 (305)
T PRK00957 115 TGPSTLAYSLRVEPFYS-DNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAY--DLEVAKKAIDIITKGLN- 190 (305)
T ss_pred cCHHHHHhhcccccccC-CccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCc--hHHHHHHHHHHHHHhhC-
Confidence 99999998877533563 233478999999999999999999999999999999998754 24566778887766443
Q ss_pred CcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHh
Q 007631 236 LNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAG 315 (595)
Q Consensus 236 ~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~ 315 (595)
..+.+|.| |++.+. ++.|.++ +||+|+||++++..+++.+...++.+|.|++||||++|+|++++++++++|+++.+
T Consensus 191 ~~v~lH~C-G~~~~i-~~~l~~~-~vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~~~ 267 (305)
T PRK00957 191 VPVAMHVC-GDVSNI-IDDLLKF-NVDILDHEFASNKKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEGIE 267 (305)
T ss_pred CceEEEEC-CCcHHH-HHHHHhC-CCCEEEEeecCCCCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 45677777 888876 9999999 99999999988777888886445668999999999999999999999999999999
Q ss_pred hcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHH
Q 007631 316 TVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (595)
Q Consensus 316 ~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~ 367 (595)
++++++++|||||||.|+|++ -|.+||+-++..++.
T Consensus 268 ~~~~~~l~lsp~CGl~~~~~~----------------~~~~kL~~l~~aa~~ 303 (305)
T PRK00957 268 ILGAENILIDPDCGMRMLPRD----------------VAFEKLKNMVEAARE 303 (305)
T ss_pred hcCHHHEEECCCcCCCcCCHH----------------HHHHHHHHHHHHHHH
Confidence 998899999999999999876 478898888877764
No 22
>PRK01207 methionine synthase; Provisional
Probab=100.00 E-value=1.7e-39 Score=339.74 Aligned_cols=153 Identities=24% Similarity=0.324 Sum_probs=141.6
Q ss_pred CCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEe-ecCcccccchhHHHhhcccCcee
Q 007631 431 NLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVL-VHGEPERNDMVEYFGEQLSGFAF 509 (595)
Q Consensus 431 ~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~Gldvi-tdGE~~R~d~~~yF~e~l~G~~~ 509 (595)
+||||+|||||||.|+++.. ++++. .+++.+...++|+.+|+.|+++|||+| +|||++|+||++||+++|+||.+
T Consensus 3 ~l~TT~iGS~P~p~~~~~~~---~~~~~-~~~~~e~~~~ai~~~v~~Qe~aGlDiv~~dGe~~R~dmv~~f~~~l~G~~~ 78 (343)
T PRK01207 3 ALITQEIGSFRKPEYLSREF---HKIEG-TDKFYELAERATLETLDVFENAGLDNIGIGGEMFRWEMYEHPAERIKGIIF 78 (343)
T ss_pred cccccccCCCCCCHHHHHHH---hccCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEeeCCcEeechHHHHHHHhcCCeEe
Confidence 48999999999999977655 45554 455666666699999999999999988 79999999999999999999999
Q ss_pred eecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceeeeccHHHHHhhhcCCCCCCChhHHHHHHHHHHH
Q 007631 510 TVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLR 589 (595)
Q Consensus 510 ~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~lpgP~ti~~~s~~~~y~~~~~~~~~diA~a~r 589 (595)
+||+|+||++|+|+|+|+|+|++++|++++|++|+|++|++|||+|||||+||+.||++++|.+++ ++++|||+|++
T Consensus 79 --~g~vr~y~~~~~r~Pii~g~i~~~~~~~v~e~~~a~~~t~kpvK~~ltGP~Ti~~~S~~~~Y~~~~-el~~~iA~al~ 155 (343)
T PRK01207 79 --YGMVRSFDNRYYRKGSIIDRMERRSSFHLDEVEFVADNTKKPIKVPITGPYTMMDWSFNDFYRDRY-DLAMEFARIIN 155 (343)
T ss_pred --cCeEEEeccccccCCeEEeeccCCCCCcHHHHHHHHHccCCCcEEEecCHHHHHHHhcccccCCHH-HHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred h
Q 007631 590 I 590 (595)
Q Consensus 590 ~ 590 (595)
+
T Consensus 156 ~ 156 (343)
T PRK01207 156 E 156 (343)
T ss_pred H
Confidence 5
No 23
>PRK06438 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-38 Score=317.36 Aligned_cols=266 Identities=18% Similarity=0.278 Sum_probs=223.3
Q ss_pred ceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCC
Q 007631 2 ASHVVG-YPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (595)
Q Consensus 2 ~t~v~G-yPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (595)
++.+.| |||+ .++++.+++|..|+++.+++.++.++.+.+.+..|+++|||++|||.++|+|. ++..
T Consensus 3 ~~~~~G~yPrp---~~l~k~l~~~~~G~i~~e~l~~~~~~~~~~~~~~q~~aGld~~tdG~lrWdDi-~~~~-------- 70 (292)
T PRK06438 3 KKLVYGIYPRT---EELRLEYNRWERGLIPDSEINEKINEEKYIFYDKVKDIGIDEYTDPLFNWYDI-FRPI-------- 70 (292)
T ss_pred ccccCCCCCCC---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhcCCceEecCccchHHh-hhhH--------
Confidence 466667 9999 99999999999999999999999999999999999999999999999999775 3321
Q ss_pred cccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc--------CCCCc
Q 007631 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL--------GMETV 152 (595)
Q Consensus 81 rf~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~--------g~~~K 152 (595)
+...+| +...+++|+||||++|+.|++.|+..+ +...+++..++++ +...|
T Consensus 71 --------------~~~~~g---ve~ggL~Ry~dNN~fYR~Pvv~g~l~~----~~~~~~~~~~~e~~~~~~~~~~~~lk 129 (292)
T PRK06438 71 --------------SLSVNG---VSLGPLTRYLETNTFYRIPEISGVKDF----NRELDKFQKIDENPPLPLYHLKKGIS 129 (292)
T ss_pred --------------HHHhcC---ccccceeEEeccCceeecceecCCCCc----chhhHHHHHHHhcccccccCCCCCce
Confidence 122345 566799999999999999999998666 6788889888874 24569
Q ss_pred eEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChH-HHHHHHHHHHHHHc
Q 007631 153 PVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH-KLQAFSDAYSELQS 231 (595)
Q Consensus 153 ~vl~GP~T~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~-~~~~~~~ay~~l~~ 231 (595)
.|||||+||..||.+ ++| .|..+|+.+++.+|++++++|- ++.|+|.||+|. +.+.. ..+.+.+
T Consensus 130 avLPGPyT~a~lS~n-e~Y---~d~~e~~~aia~~l~~e~~al~---v~~v~l~EPsl~-~~~~~~~~e~~~e------- 194 (292)
T PRK06438 130 IFLPSPYSFYKMSKT-LEK---IDYNDFYKKLVNIYSRILDIFS---IKNVVLLDVFYY-KNDNYSYLSDLAK------- 194 (292)
T ss_pred EEecCchhHHHhhcc-ccc---CCHHHHHHHHHHHHHHHHHhCC---cceEEEecchhc-CCCchhhhhhccc-------
Confidence 999999999999986 666 4889999999999999999886 999999999999 54322 3333322
Q ss_pred CCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHH
Q 007631 232 SLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQ 311 (595)
Q Consensus 232 ~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~ 311 (595)
+..++|+||||. ...+++.|+ + +||+| + +.+.+..+.. + .. .+++|||||||+.+|++++ .+++
T Consensus 195 ---~~~v~l~TYf~~-~~~~~~~L~-~-~vd~i----v-~~~~l~~v~e-y-~~-~v~lGivdarnTkmE~~e~-~~~i- 258 (292)
T PRK06438 195 ---KYNVILITSGNV-SKLNFNGLG-H-KFESI----V-RDDEVDYIIN-K-CS-YPGIKIFSGDNTKMEDLKA-RKEI- 258 (292)
T ss_pred ---cccEEEEEecCC-chhhHHhhc-c-cceeE----e-ccchhhhHHh-h-cC-CceeeeeecCcccccCHHH-hhhc-
Confidence 257889999998 543489999 9 99999 3 4677888876 5 44 7999999999999999999 8888
Q ss_pred HHHhhcCCCcEEEeCCCCCcccccc
Q 007631 312 DLAGTVGKDKVVVSTSCSLLHTAVD 336 (595)
Q Consensus 312 ~~~~~~~~~rl~vspsCgL~h~P~~ 336 (595)
-|.++++|+|||.|..+|+.
T Consensus 259 -----~~~~~v~vt~nt~ldfLP~~ 278 (292)
T PRK06438 259 -----SGYDNVLLTHSDYMDFLPRE 278 (292)
T ss_pred -----cCcceEEEcCCchhhhccHH
Confidence 34589999999999999998
No 24
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=3.5e-37 Score=325.68 Aligned_cols=159 Identities=26% Similarity=0.352 Sum_probs=152.4
Q ss_pred CCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceee
Q 007631 431 NLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFT 510 (595)
Q Consensus 431 ~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~ 510 (595)
+||||||||||||+||+++|+++++|+++.++|+++++++|+++|+.|+++|||+|||||++|.||+.||+++|+||.++
T Consensus 2 ~l~tt~VGS~prp~~l~~~~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~~~ 81 (339)
T PRK09121 2 LLPTSTAGSLPKPSWLAEPETLWSPWKLQGEELIEGKQDALRLSLQEQEDAGIDIVSDGEQTRQHFVTTFIEHLSGVDFE 81 (339)
T ss_pred CCCCceecCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceeCCccccchHHHHHHHhCCCceee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ecceeeecCCcc-cCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceeeeccHHHHHhhhcCCCCCCChhHHHHHHHHHHH
Q 007631 511 VNGWVQSYGSRC-VKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLR 589 (595)
Q Consensus 511 ~~g~v~~yg~~~-~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~lpgP~ti~~~s~~~~y~~~~~~~~~diA~a~r 589 (595)
..+++++| +++ +++|+|+|+|++++|+++++++|+++++++++|++||||+||+.|+++++|.+++ ++++|||.|||
T Consensus 82 ~~~~~~~~-~~~~~~~p~v~G~i~~~~~~~~~~~~~~~~~~~~~vK~~ipgP~tl~~~~~~~~Y~~~~-el~~dlA~al~ 159 (339)
T PRK09121 82 KRETVRIR-DRYDASVPTVVGAVSRQKPVFVEDAKFLRQQTTQPIKWALPGPMTMIDTLYDDHYKSRE-KLAWEFAKILN 159 (339)
T ss_pred cCCcceec-ccccCCCCEEEEecCCCCCCcHHHHHHHHhccCCCceEEeCcHHHHHHHhccccCCCHH-HHHHHHHHHHH
Confidence 78889999 665 6889999999998899999999999999999999999999999999999999999 99999999998
Q ss_pred hh
Q 007631 590 IF 591 (595)
Q Consensus 590 ~~ 591 (595)
+.
T Consensus 160 ~E 161 (339)
T PRK09121 160 QE 161 (339)
T ss_pred HH
Confidence 73
No 25
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.1e-32 Score=284.32 Aligned_cols=295 Identities=16% Similarity=0.224 Sum_probs=213.4
Q ss_pred eeeccCCCCCCcHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCC
Q 007631 3 SHVVGYPRMGPKRELKFALESFW---DGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVP 79 (595)
Q Consensus 3 t~v~GyPRig~~reLK~A~e~yw---~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip 79 (595)
|++++||++ .++++ +.|- .|+++.++|.+ .+++.++.|+++|+|++|+|.|+ | |+++.
T Consensus 7 ~~iGsyP~P---~~~~k--~~~~~~~~g~~~~e~l~~----~~~~~~~~q~dAGld~~Tdgqlr--D-m~~~f------- 67 (344)
T PRK06052 7 DDIGSFPLP---EGVTR--EWVENAFETREEDEKLFS----VVRSAFQMKIDAGVQVPTYPQFR--D-MIEQF------- 67 (344)
T ss_pred ccCCCCCCC---ccccH--HHHhhhhcCCCcHHHHHH----HHHHHHHHHHhcCCccccchHHH--H-HHHhH-------
Confidence 566679998 66666 5554 69999999998 88999999999999999999999 4 33321
Q ss_pred CcccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccC-CcccHHHHHHHHHcCCCCceEeehH
Q 007631 80 PRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYA-SHKAVQEYKEAKALGMETVPVLVGP 158 (595)
Q Consensus 80 ~rf~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~-~~~~~~~~~~a~~~g~~~K~vl~GP 158 (595)
+...+|..... + .|.|-|=.... ..+. -.....+|++-...+.++|.+|+||
T Consensus 68 ---------------l~~i~~~~~~~--~---------p~~~~~~~a~i-~el~~~~~~~~~~~~~~~~~~~VKv~iTGP 120 (344)
T PRK06052 68 ---------------LDIIRDEKCCE--E---------PYVVKEECAKI-LELEAIEEVAKEYKEETGETLEVRVCVTGP 120 (344)
T ss_pred ---------------HHHHcCCcccC--C---------CeeeehhhhhH-HHHHHHHHHHHHHHHhhCCCCCeEEEecCH
Confidence 22234422110 0 12222111110 0000 0111122222221235799999999
Q ss_pred HHHhhhccCCCCcCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC-hHHHHHHHHHHHHH-----Hc
Q 007631 159 VSYLLLSKPAKGVEKSFS-LLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD-SHKLQAFSDAYSEL-----QS 231 (595)
Q Consensus 159 ~T~l~lsk~~~~y~~~~d-~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~-~~~~~~~~~ay~~l-----~~ 231 (595)
+|++.++....+| .| ..++..+++.+.+++++.|.++||.+||||||+|.+.+. ..+.+.+.+|++.. ..
T Consensus 121 ~tL~~~~f~~~~Y---~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~~a~~~ 197 (344)
T PRK06052 121 TELYLQEFGGTIY---TDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTVASTYARKQ 197 (344)
T ss_pred HHHHHHHcCCccc---cchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHHHHhhhccC
Confidence 9999998865466 35 789999999999999999999999999999999998753 11334444444444 23
Q ss_pred CCCCCcEEEEeccCCCCcccHHHHhcCCC-ccEEEEEeecCCCChhhHhhh-C-CCCcEEEEeEeeC--C----------
Q 007631 232 SLSGLNVLIETYFADVPAETYKILTSLKG-VTGFGFDLIRGTKTLDLIKTE-F-PLGKYLFAGVVDG--R---------- 296 (595)
Q Consensus 232 ~~~~~~i~l~tyfg~~~~~v~~~l~~l~p-vd~i~lD~~~~~~~l~~l~~~-~-p~~k~l~lGVVdg--r---------- 296 (595)
+. ++++++|+ +..++.++++ | ||.|++|+.+++.+++.+.+. + -.+|.|++||+|+ +
T Consensus 198 gv-dv~i~lH~------~l~~~~i~~~-~~idvi~~E~A~~~~~L~~l~~~~~e~~dk~ig~GV~dtd~~~~~~~~~~~~ 269 (344)
T PRK06052 198 GA-DVEIHLHS------PLYYELICET-PGINVIGVESAATPSYLDLIDKKVLEDTDTFLRVGVARTDIFSLIAILNEKY 269 (344)
T ss_pred Cc-ceEEEEeh------HhhHHHHhcC-CCCCEEeeeccCChHHHHHHhhhhhhhcCCceEEeEEEchhhcchhhhhhhc
Confidence 33 36788876 3313899999 9 999999999988899888762 1 1379999999999 8
Q ss_pred --------------CCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHH
Q 007631 297 --------------NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVN 362 (595)
Q Consensus 297 --------------n~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~ 362 (595)
+..+|+.+++.++|+++.+++|++++||+|||||.+.| |+. -|.+||.-|+
T Consensus 270 ~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK~~~-----e~~----------~A~~KL~nmv 334 (344)
T PRK06052 270 GTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLGSWP-----SQE----------LAFRLLENVA 334 (344)
T ss_pred ccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCCCh-----hhH----------HHHHHHHHHH
Confidence 78888999999999999999999999999999999654 111 5899999998
Q ss_pred HHHHHhc
Q 007631 363 ALAKALS 369 (595)
Q Consensus 363 ~l~~~l~ 369 (595)
..++.++
T Consensus 335 ~aa~~~r 341 (344)
T PRK06052 335 KAINEFR 341 (344)
T ss_pred HHHHHHH
Confidence 8887765
No 26
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=100.00 E-value=6.6e-34 Score=299.70 Aligned_cols=159 Identities=38% Similarity=0.572 Sum_probs=140.4
Q ss_pred CcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceeee
Q 007631 432 LPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTV 511 (595)
Q Consensus 432 ~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~ 511 (595)
||||+|||||||++|+++|.+|.+|+++.++++++++++|+++|++|+++||||+|||||+|.||+.||.++|+||....
T Consensus 1 ~~TT~VGS~prp~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~V~~Q~~~GldvitDGE~~R~~~~~~f~~~l~G~~~~~ 80 (324)
T PF01717_consen 1 FPTTVVGSFPRPEELKEAREAFAKGEISPEELEEIEDEAIADAVKRQEDAGLDVITDGEFRRGDFHSYFAERLDGFGDTL 80 (324)
T ss_dssp S-BB-SSB---SHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHT-SCBE-BTTT-SSTTHHHHTTSEEEEEES
T ss_pred CCCcccCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceecceeccCchhhhhhhhccCceeec
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999995555
Q ss_pred cceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceeeeccHHHHHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631 512 NGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 512 ~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~lpgP~ti~~~s~~~~y~~~~~~~~~diA~a~r~~ 591 (595)
++|+++||++++++|+|+|+|.+++|++++++.++++.+++++|+++|||+||+.|+++++|.+++ +++.|+|.||++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vK~~i~gP~tl~~~~~~~~y~~~~-~~~~dla~a~~~e 159 (324)
T PF01717_consen 81 NGDVQSFGERYYRPPIVVGKISRKKPFAVEEFKYAQSLTDKPVKGTITGPSTLADPSANRYYKDRE-ELLEDLAEAYREE 159 (324)
T ss_dssp SEEEEEETTEEEEEEEEEEEEEESS-SSHHHHHHHHHT-SSSBEEEEE-HHHHHHTSEESSSS-HH-HHHHHHHHHHHHH
T ss_pred cccceecccccccceEEecccccCCcchhHHHHHHHhccccccccccCHHHHhhchhccccCCCHH-HHHHHHHHHHHHH
Confidence 789999999998999999999999999999999999999999999999999999999999999999 9999999999863
No 27
>PRK06233 hypothetical protein; Provisional
Probab=99.98 E-value=3.9e-32 Score=290.79 Aligned_cols=159 Identities=19% Similarity=0.135 Sum_probs=141.3
Q ss_pred CCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCcee
Q 007631 430 PNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAF 509 (595)
Q Consensus 430 p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~ 509 (595)
|||+||||||||||+||+++|+++++|+++.++|+++++++|+++|++|+++|||||||||++|+||+.+|++.|+||.+
T Consensus 7 ~~~~~~~VGS~prP~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~~ 86 (372)
T PRK06233 7 APFRFDIVGSFLRPERLKEAREQFAIGEISQDQLLKIQHAEIKRLVKEQVELGLKAVTDGEFNRSWWHLDFLWGLNGVGK 86 (372)
T ss_pred CCcccceEeeCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCcCCccHHHHHHhhcCceEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eecceeeecCCcc----cCCcEEEeeCCCC-CCCcHHHHHHHHhccC--CCceeeeccHHHHHhhhc----CCCCCCChh
Q 007631 510 TVNGWVQSYGSRC----VKPPIIYGDVSRP-KAMTVFWSSMAQSMTK--RPMKGMLTGPVTILNWSF----VRNDQPRQG 578 (595)
Q Consensus 510 ~~~g~v~~yg~~~----~~~pii~g~I~~~-~~~~~~~~~~aq~~t~--k~vK~~lpgP~ti~~~s~----~~~y~~~~~ 578 (595)
. ++.++|+..+ ..+|+|+|+|+++ +++.+++++|++++++ .++|++||||+||+.++. +++|.+++
T Consensus 87 ~--~~~~~~~~~~~~~~~~~~~v~g~i~~~~~~p~~~~~~~~~~~~~~~~~~K~tipgP~~l~~~~~~~~~~~~Y~~~e- 163 (372)
T PRK06233 87 Y--EYEDSYKFHGAKTRTDNAELAGKVAFNPDHPFFAAFKYLKSIVPEGVLPKQTIPSPSLLFRDNRSDNWPKFYDSWD- 163 (372)
T ss_pred e--cCcceeeecCCcCCCCCCEEEEeeccCCCCchHHHHHHHHhhhcCCCceEEEecCcHHhccCcccccccccCCCHH-
Confidence 4 4555554332 4579999999984 3456899999999974 568999999999996642 56899999
Q ss_pred HHHHHHHHHHHhh
Q 007631 579 INQIQCPVNLRIF 591 (595)
Q Consensus 579 ~~~~diA~a~r~~ 591 (595)
+++.|||.||++.
T Consensus 164 el~~dlA~a~~~E 176 (372)
T PRK06233 164 DYLDDLAQAYHDT 176 (372)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 28
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.98 E-value=4.8e-32 Score=289.57 Aligned_cols=162 Identities=17% Similarity=0.103 Sum_probs=143.2
Q ss_pred CCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCce
Q 007631 429 LPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA 508 (595)
Q Consensus 429 ~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~ 508 (595)
.|||+||||||||||++|+++|+++++|+|+.++|+++++++|+++|+.|+++|||+|||||++|.+|+.+|+++|+|++
T Consensus 5 ~~~~~tt~VGS~prP~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldvitDGE~rR~~w~~df~~~l~Gv~ 84 (368)
T PRK06520 5 KAPFRADVVGSFLRPAAIKQARQQFAAGEIDAAALRKIEDMEIRKVVEKQRACGLKVVTDGEFRRAWWHFDFFDGLQGVE 84 (368)
T ss_pred CCCCCcceeccCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccccceeeehhhhcCCee
Confidence 38899999999999999999999999999999999999999999999999999999999999999988889999999988
Q ss_pred eeec-ceeeecCCc-ccCCcEEEeeCCCC-CCCcHHHHHHHHhccC-CCceeeeccHHHHHhh-----hcCCCCCCChhH
Q 007631 509 FTVN-GWVQSYGSR-CVKPPIIYGDVSRP-KAMTVFWSSMAQSMTK-RPMKGMLTGPVTILNW-----SFVRNDQPRQGI 579 (595)
Q Consensus 509 ~~~~-g~v~~yg~~-~~~~pii~g~I~~~-~~~~~~~~~~aq~~t~-k~vK~~lpgP~ti~~~-----s~~~~y~~~~~~ 579 (595)
...+ +...++|++ +.+.|+|+|+|+++ +++.+++++|++++++ .++|++||||+||+.| +.+++|.+++ +
T Consensus 85 ~~~~~~g~~f~~~~~~~~~~~v~G~I~~~~~~~~~~~~~~l~~~~~~~~~K~~ipgP~~l~~~~~~~~~~~~~Y~~~~-~ 163 (368)
T PRK06520 85 RYEAEQGIQFNGVQTKARGVRVTGKLDFPDDHPMLEDFRFLKSISGDATPKMTIPSPSVLHFRGGRKAIDATVYPDLD-D 163 (368)
T ss_pred eecccCceeecCcccccCCeEEEEEecCCCCCchHHHHHHHHhhccCCCCCEEcCcHHHHHhhccccccchhcCCCHH-H
Confidence 5432 224455554 35679999999986 3556899999999974 5899999999999966 6888999999 9
Q ss_pred HHHHHHHHHHhh
Q 007631 580 NQIQCPVNLRIF 591 (595)
Q Consensus 580 ~~~diA~a~r~~ 591 (595)
++.|||.||++.
T Consensus 164 ~~~dlA~al~~E 175 (368)
T PRK06520 164 YFDDLAKTWRDA 175 (368)
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 29
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.97 E-value=1.1e-30 Score=275.21 Aligned_cols=158 Identities=19% Similarity=0.286 Sum_probs=146.6
Q ss_pred CCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceee
Q 007631 431 NLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFT 510 (595)
Q Consensus 431 ~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~ 510 (595)
.|+||||||||||+||+++++++.+|+++.+++++..+++++++|+.|+++|||+||||||+|++|+.+|++.+.|++.
T Consensus 2 ~~~tt~VGS~Prp~~Lk~a~e~~~~g~i~~~~l~~~~~~a~~~~v~~Q~~aGlD~itdGe~r~d~~~~~f~~~~~G~~~- 80 (326)
T PRK08575 2 KIKKALVGSYPRPVKLAKVISWYNSGKISKEKLEKAINENTKRFFELAKDVGIDYTTDGLFRWDDIFDPTISFISGVEK- 80 (326)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeCCCCcchHHHHHHHHHHcCCccc-
Confidence 4789999999999999999999999999999999999999999999999999999999999997799999999999975
Q ss_pred ecceeeecCCcc-cCCcEEEeeCCCCCC-CcHHHHHHHHhccC-----CCceeeeccHHHHHhhhcCCCCCCChhHHHHH
Q 007631 511 VNGWVQSYGSRC-VKPPIIYGDVSRPKA-MTVFWSSMAQSMTK-----RPMKGMLTGPVTILNWSFVRNDQPRQGINQIQ 583 (595)
Q Consensus 511 ~~g~v~~yg~~~-~~~pii~g~I~~~~~-~~~~~~~~aq~~t~-----k~vK~~lpgP~ti~~~s~~~~y~~~~~~~~~d 583 (595)
.+.+++|++++ ++.|+|+|+|++.++ .+++|+++++++++ +++|++||||+|++.|+.+++|.+++ +++.+
T Consensus 81 -~~~~k~f~~ny~y~~P~v~g~i~~~~~~~~~~~~~~ak~~~~~~~~~~~~K~vl~GP~T~~~~s~~~~Y~~~e-~l~~~ 158 (326)
T PRK08575 81 -GGLQRFYDNNFYYRQPVIKEKINLKEENPYLQWLESAREIKEEVSLESKLKAVLPGPLTYAVLSDNEYYKNLI-ELMED 158 (326)
T ss_pred -CceeEecCCCceeeCeEEEeeecCCCCCccHHHHHHHHHhHhccCCCCCccEEEecHHHHHHHhccccCCCHH-HHHHH
Confidence 46789999886 889999999998754 58999999999852 48999999999999999999998888 99999
Q ss_pred HHHHHHhh
Q 007631 584 CPVNLRIF 591 (595)
Q Consensus 584 iA~a~r~~ 591 (595)
+|.+|++.
T Consensus 159 ~a~~l~~e 166 (326)
T PRK08575 159 YASVVNSL 166 (326)
T ss_pred HHHHHHHH
Confidence 99999864
No 30
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=99.97 E-value=3.8e-31 Score=279.53 Aligned_cols=156 Identities=51% Similarity=0.753 Sum_probs=147.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceeeec
Q 007631 433 PTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVN 512 (595)
Q Consensus 433 ~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~ 512 (595)
|||||||||||+||+++++++++|+++.++|+++++++|+++|+.|+++|||+|||||++|.||+.||+++|+||+. .
T Consensus 1 ~tt~vGS~prp~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~v~~Q~~~GldiitDGe~~r~~~~~~f~~~l~G~~~--~ 78 (332)
T cd03311 1 PTTTVGSFPRPKELREARAKFKKGEISAEELREAEDDAIADAVKDQEEAGLDVVTDGEFRRSDMVEYFLERLDGFEF--T 78 (332)
T ss_pred CCceecCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccccHHHHHHHhCCceee--c
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988 4
Q ss_pred ceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccC-CCceeeeccHHHHHhhhcCCC---CCCChhHHHHHHHHHH
Q 007631 513 GWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTK-RPMKGMLTGPVTILNWSFVRN---DQPRQGINQIQCPVNL 588 (595)
Q Consensus 513 g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~-k~vK~~lpgP~ti~~~s~~~~---y~~~~~~~~~diA~a~ 588 (595)
+|+++++++++++|.++|+++++.++.+.+++++++.+. +++|+++|||+||+.++.+.+ |.+.+ +++.++|.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~l~GP~Tla~~~~~~~~~~y~~~~-el~~~la~~~ 157 (332)
T cd03311 79 GWVQSYGSRYYKPPGIVGDVSRRPPMTVEEGKIAQSLTHPKPLKGILTGPVTIPSPSFVRFRGYYPSRE-ELAMDLALAL 157 (332)
T ss_pred cceeeeccceeeCCeeecccccCCCCeEEEEEEeccCCCCccccccCCCCeeECCchhhcccccCCCHH-HHHHHHHHHH
Confidence 789999999999999999998877888899999999987 899999999999999998876 88888 9999999999
Q ss_pred Hhh
Q 007631 589 RIF 591 (595)
Q Consensus 589 r~~ 591 (595)
++.
T Consensus 158 ~~e 160 (332)
T cd03311 158 REE 160 (332)
T ss_pred HHH
Confidence 864
No 31
>PRK04326 methionine synthase; Provisional
Probab=99.96 E-value=1.4e-29 Score=267.55 Aligned_cols=163 Identities=36% Similarity=0.533 Sum_probs=153.6
Q ss_pred hCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhccc
Q 007631 426 KLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLS 505 (595)
Q Consensus 426 ~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~ 505 (595)
++++|+|+||+|||||||.||++++++|.+|+++.++++++.+++++.+|+.|+++|+|+||||||+|.||+.||...++
T Consensus 3 ~~~~~~~~~t~vGS~Prp~~l~~a~~~~~~g~~~~~~l~~~~~~a~~~~v~~q~~~Gld~itdGe~~r~~~~~~f~~~~~ 82 (330)
T PRK04326 3 HDKLPFLPTTVVGSYPKPKWLREAIRLHKAGKISEEDLHEAFDDAVRLVVKDHERAGVDIPVDGEMRREEMVEYFAERIE 82 (330)
T ss_pred CCCCCCCcCccccCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCeEEcHhHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhcc-CCCceeeeccHHHHHhhhcCCCCCCChhHHHHHH
Q 007631 506 GFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMT-KRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQC 584 (595)
Q Consensus 506 G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t-~k~vK~~lpgP~ti~~~s~~~~y~~~~~~~~~di 584 (595)
|+++ .+++++||++++++|.|+|+++..+++.+++++++++.+ ++++|+++|||+|++.++.+++|.+.. +++.++
T Consensus 83 G~~~--~~~~~~~~~~~~~~P~v~g~~~~~~~~~l~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~~~y~~~~-e~~~~l 159 (330)
T PRK04326 83 GFKF--YGPVRVWGNNYFRKPSVVGKIEYKEPMLVDEFEFAKSVTYTRPVKVPITGPYTIAEWSFNEYYKDKE-ELVFDL 159 (330)
T ss_pred ceec--cCceeccccccccCCeEEEeccCCCCCcHHHHHHHHhcccCCCceEeccCHHHHHhhcccccCCCHH-HHHHHH
Confidence 9987 578888998888889999999988889999999999998 899999999999999888888899888 999999
Q ss_pred HHHHHhh
Q 007631 585 PVNLRIF 591 (595)
Q Consensus 585 A~a~r~~ 591 (595)
+.++++.
T Consensus 160 ~~~~~~~ 166 (330)
T PRK04326 160 AKVINEE 166 (330)
T ss_pred HHHHHHH
Confidence 9998863
No 32
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=99.96 E-value=1.7e-28 Score=256.61 Aligned_cols=313 Identities=17% Similarity=0.188 Sum_probs=238.2
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||++||.. .||+..+..|-+|+||++++.+.+++.+.+.++.|++.|||++..||-.+.|.| ..||.
T Consensus 435 TTTIGSFPQT---kelR~~R~~f~~~~IS~edY~k~I~~Ei~kVvkfQEelgiDVLVHGEpERNDMV----eyFGE---- 503 (765)
T KOG2263|consen 435 TTTIGSFPQT---KELRRVRREFKAKKISEEDYVKFIKEEIEKVVKFQEELGIDVLVHGEPERNDMV----EYFGE---- 503 (765)
T ss_pred cccccCCcch---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHhHHHHhCccEEecCCcccccHH----HHHHh----
Confidence 5788889999 999999999999999999999999999999999999999999999998886654 22221
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
.+.+| ++ +..+...-+...| -..|.|.|+.. ...+.-+.+-.+|++. ..+.|..|+||+|
T Consensus 504 --------ql~Gf-aF-------TvNGWVQSYGSRc-VkPPiI~GDvs--RPk~MtV~~S~~AQs~TsrPmKGMLTgPvT 564 (765)
T KOG2263|consen 504 --------QLSGF-AF-------TVNGWVQSYGSRC-VKPPIIYGDVS--RPKAMTVFWSSYAQSMTSRPMKGMLTGPVT 564 (765)
T ss_pred --------hccce-EE-------EecchhHhhcCcc-cCCCeeecccc--CCCcceeeHHHHHHHHhcCcccccccCceE
Confidence 12221 11 1222222233322 33467777643 2335556677788887 5789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC---hHH---HHHHHHHHHHHHcCC-
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD---SHK---LQAFSDAYSELQSSL- 233 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~---~~~---~~~~~~ay~~l~~~~- 233 (595)
+|.||...++ .++.+-..+|+-+.+.++.+|.++|+..||+|||+|...++ .++ ++...++++--..++
T Consensus 565 iL~WSF~R~D----~~~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR~aE~~~Yl~WAv~aFRi~~sgVq 640 (765)
T KOG2263|consen 565 ILNWSFVRND----QPRHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLRKAEHSFYLDWAVHAFRITNSGVQ 640 (765)
T ss_pred EEEeccccCC----cchhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcchhhHHHHHHHHHHHhhhcccccc
Confidence 9999986442 46678889999999999999999999999999999987764 222 233344444322232
Q ss_pred CCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChh-hHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHH
Q 007631 234 SGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLD-LIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQD 312 (595)
Q Consensus 234 ~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~-~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~ 312 (595)
+..+||-|.||.+++++ +..+.++ ..|.+.+|..+....+- .++.+...+--+++||.|-+++.+.+.++++++|.+
T Consensus 641 d~TQIHtH~CYSdfndi-~~~I~~m-DADVitIEnSrsD~kllsvf~~gvkY~~~IGpG~~DIHSPRiPs~dE~~erI~~ 718 (765)
T KOG2263|consen 641 DSTQIHTHMCYSDFNDI-IHSIIDM-DADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIAERINK 718 (765)
T ss_pred ccchhhhhhhhhhccHH-HHHHHhc-cCcEEEEecCcchHHHHHHHhccCcccCCcCCceecccCCCCCCHHHHHHHHHH
Confidence 34689999999999997 9999999 99999999988543333 333344445579999999999999999999999999
Q ss_pred HHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHH
Q 007631 313 LAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAA 355 (595)
Q Consensus 313 ~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~ 355 (595)
.++.++.+.+||+|+|||..--|+ |++ +.++++.+=|+
T Consensus 719 ~l~~~~~~~lWvNPDCGLKTR~~~---E~~--~~L~~Mv~AAk 756 (765)
T KOG2263|consen 719 MLAVLPQNILWVNPDCGLKTRGYT---EVK--PALKNMVAAAK 756 (765)
T ss_pred HHHhcccccEEECCCcCcccCCCc---ccc--HHHHHHHHHHH
Confidence 999999999999999999976665 544 45666555443
No 33
>PRK00957 methionine synthase; Provisional
Probab=99.92 E-value=4.9e-25 Score=230.47 Aligned_cols=139 Identities=27% Similarity=0.321 Sum_probs=120.7
Q ss_pred CcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceeee
Q 007631 432 LPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTV 511 (595)
Q Consensus 432 ~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~ 511 (595)
||||+|||||+|+|+...... .-.+.+.+++.++++|+++|+.|+++|||++||||+ |.||+.||+++|+||+
T Consensus 2 ~~t~~vgs~p~~~~~~~~~~~---~~~~~~~~~~~~~~ai~~~v~~q~~~Gld~vtdGe~-r~~~~~~f~~~l~G~~--- 74 (305)
T PRK00957 2 MITTVVGSYPVVKGEPETLKD---KIKGFFGLYDPYKPAIEEAVADQVKAGIDIISDGQV-RGDMVEIFASNMPGFD--- 74 (305)
T ss_pred CCcceecCCCCCccchhHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCc-cCchHHHHHhcCCCcc---
Confidence 689999999999996654322 336778899999999999999999999999999999 6788999999999984
Q ss_pred cceeeecCCcccCCcEEEeeCCCC-CCCcHHHHHHHHhccC-----CCceeeeccHHHHHhhhcCC-CCCCC--hhHHHH
Q 007631 512 NGWVQSYGSRCVKPPIIYGDVSRP-KAMTVFWSSMAQSMTK-----RPMKGMLTGPVTILNWSFVR-NDQPR--QGINQI 582 (595)
Q Consensus 512 ~g~v~~yg~~~~~~pii~g~I~~~-~~~~~~~~~~aq~~t~-----k~vK~~lpgP~ti~~~s~~~-~y~~~--~~~~~~ 582 (595)
.|.|+|+|+++ +|+++++++|+++++. .++|++||||+|++.+++++ +|.+. + +++.
T Consensus 75 -------------~~~vvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vK~~i~GP~Tla~~~~~~~~y~~~~~~-~~~~ 140 (305)
T PRK00957 75 -------------GKRVIGRVEPPAKPITLKDLKYAKKVAKKKDPNKGVKGIITGPSTLAYSLRVEPFYSDNKDE-ELIY 140 (305)
T ss_pred -------------CCeEEEeecCCCCCCcHHHHHHHHHHHhccCCCCceeEEecCHHHHHhhcccccccCCccHH-HHHH
Confidence 14566999997 6899999999999974 48999999999999988876 67776 6 9999
Q ss_pred HHHHHHHhh
Q 007631 583 QCPVNLRIF 591 (595)
Q Consensus 583 diA~a~r~~ 591 (595)
|++.+|++.
T Consensus 141 dla~~~~~~ 149 (305)
T PRK00957 141 DLARALRKE 149 (305)
T ss_pred HHHHHHHHH
Confidence 999999874
No 34
>PRK06438 hypothetical protein; Provisional
Probab=99.90 E-value=1e-23 Score=214.11 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=142.2
Q ss_pred CcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceeee
Q 007631 432 LPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTV 511 (595)
Q Consensus 432 ~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~ 511 (595)
+.+-++||||||.|+++..++++.|.++.++++++++++.++++..|.++|||.+|||.++|+||+.+|...++|++.
T Consensus 2 ~~~~~~G~yPrp~~l~k~l~~~~~G~i~~e~l~~~~~~~~~~~~~~q~~aGld~~tdG~lrWdDi~~~~~~~~~gve~-- 79 (292)
T PRK06438 2 VKKLVYGIYPRTEELRLEYNRWERGLIPDSEINEKINEEKYIFYDKVKDIGIDEYTDPLFNWYDIFRPISLSVNGVSL-- 79 (292)
T ss_pred cccccCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhcCCceEecCccchHHhhhhHHHHhcCccc--
Confidence 346689999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred cceeeecCCc-ccCCcEEEeeCCCCCCCcHHHHHHHHhcc-------CCCceeeeccHHHHHhhhcCCCCCCChhHHHHH
Q 007631 512 NGWVQSYGSR-CVKPPIIYGDVSRPKAMTVFWSSMAQSMT-------KRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQ 583 (595)
Q Consensus 512 ~g~v~~yg~~-~~~~pii~g~I~~~~~~~~~~~~~aq~~t-------~k~vK~~lpgP~ti~~~s~~~~y~~~~~~~~~d 583 (595)
+|.+|+|+++ ++|.|+|.|++++ ...++|+..++.+. +.++|+.||||+|++..|.|++|.+.+ ++..+
T Consensus 80 ggL~Ry~dNN~fYR~Pvv~g~l~~--~~~~~~~~~~~e~~~~~~~~~~~~lkavLPGPyT~a~lS~ne~Y~d~~-e~~~a 156 (292)
T PRK06438 80 GPLTRYLETNTFYRIPEISGVKDF--NRELDKFQKIDENPPLPLYHLKKGISIFLPSPYSFYKMSKTLEKIDYN-DFYKK 156 (292)
T ss_pred cceeEEeccCceeecceecCCCCc--chhhHHHHHHHhcccccccCCCCCceEEecCchhHHHhhcccccCCHH-HHHHH
Confidence 7899999877 5899999999998 44668999998874 357899999999999999999999999 99999
Q ss_pred HHHHHHh
Q 007631 584 CPVNLRI 590 (595)
Q Consensus 584 iA~a~r~ 590 (595)
||.++..
T Consensus 157 ia~~l~~ 163 (292)
T PRK06438 157 LVNIYSR 163 (292)
T ss_pred HHHHHHH
Confidence 9999864
No 35
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=99.90 E-value=3.4e-23 Score=220.97 Aligned_cols=155 Identities=23% Similarity=0.193 Sum_probs=140.7
Q ss_pred ccccCCCCC---cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCce--
Q 007631 434 TTTIGSFPQ---TMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA-- 508 (595)
Q Consensus 434 tt~VGSfPr---p~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~-- 508 (595)
||++| ||| +++|++++++|.+|+||.+++++.+++++++.++.|+++|||.||||||+|.|+|.+|+..|+|+.
T Consensus 2 ~~~~G-yPrig~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~~Gl~~it~Gef~~yd~~ld~~~~l~~ip~r 80 (360)
T cd03312 2 THILG-FPRIGANRELKKALESYWKGKISEEELLATAKELRLRHWKLQKEAGIDLIPVGDFSLYDHVLDTSVLLGAIPER 80 (360)
T ss_pred CCcCC-CCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCchhHHHHHHHHHHhCCCchh
Confidence 78899 999 999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ee----------------e------cceeeecCCcc-cCCcEEEeeCCC--CCCCcHHHHHHHHhccCCCceeeeccHHH
Q 007631 509 FT----------------V------NGWVQSYGSRC-VKPPIIYGDVSR--PKAMTVFWSSMAQSMTKRPMKGMLTGPVT 563 (595)
Q Consensus 509 ~~----------------~------~g~v~~yg~~~-~~~pii~g~I~~--~~~~~~~~~~~aq~~t~k~vK~~lpgP~t 563 (595)
+. . .+..++|+++| |+.|.|.|++.+ ..++++++++++++++ +++|++||||+|
T Consensus 81 ~~~~~~~~~~~~yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~~~~~l~~~~~a~~~~-~~~K~~i~GP~T 159 (360)
T cd03312 81 FGALGGLVDLDTYFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLASNKLLDEYLEAKALG-INTKPVLLGPVT 159 (360)
T ss_pred hccccCCccHHHHHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccCcchHHHHHHHHHhcC-CCCcEEEECHHH
Confidence 10 0 12357899997 889999999998 4688999999999985 799999999999
Q ss_pred HHhhhcCCC-CCCChhHHHHHHHHHHHhh
Q 007631 564 ILNWSFVRN-DQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 564 i~~~s~~~~-y~~~~~~~~~diA~a~r~~ 591 (595)
++.||.+++ |.+.+ ++++|||.+|++.
T Consensus 160 ~~~ls~~~~~Y~~~~-el~~dla~~y~~e 187 (360)
T cd03312 160 FLKLSKAKGGGFDRL-SLLDKLLPVYKEL 187 (360)
T ss_pred HHHHhcccccCCCHH-HHHHHHHHHHHHH
Confidence 999999887 88888 9999999999864
No 36
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=99.82 E-value=2.2e-20 Score=196.35 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=128.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceeeecc
Q 007631 434 TTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNG 513 (595)
Q Consensus 434 tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g 513 (595)
||+|||||||+++++++..+..|+++.+++++..++++..+++.|+++|+|+++|||| |.+|+.+|.+.+.|++..
T Consensus 2 ~t~vGS~P~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~gl~~i~dge~-~~~~~~~~~~~~~~~~~~--- 77 (321)
T cd03310 2 ATGIGSYPLPDGVTKEWSILEKGAIEPEWPEEALFTALGSFFELQLEAGVEVPTYGQL-GDDMIGRFLEVLVDLETG--- 77 (321)
T ss_pred CCcccCCCCchhHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhhcCCcCCCccc-HHHHHhhHHHHHHHhhcc---
Confidence 8999999999999999999999999999999999999999999999999999999999 999999999999999853
Q ss_pred eeeecCCcc-cCCcEEEeeCCCCCCCcHHHHHHHHhcc--CCCceeeeccHHHHHhhhcCCCC--CCChhHHHHHHHHHH
Q 007631 514 WVQSYGSRC-VKPPIIYGDVSRPKAMTVFWSSMAQSMT--KRPMKGMLTGPVTILNWSFVRND--QPRQGINQIQCPVNL 588 (595)
Q Consensus 514 ~v~~yg~~~-~~~pii~g~I~~~~~~~~~~~~~aq~~t--~k~vK~~lpgP~ti~~~s~~~~y--~~~~~~~~~diA~a~ 588 (595)
.+.|++++ +++|.++|++ +. +...+.++.++... ..++|+++|||+|++.++.+.+| ...+ +++.+++.+|
T Consensus 78 -~~~~~~n~~y~~p~~~~~~-~~-~~~~~~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~~~~~~~~~~-~l~~~l~~~~ 153 (321)
T cd03310 78 -TRFFDNNFFYRPPEAKIEA-FL-PLELDYLEEVAEAYKEALKVKVVVTGPLTLALLAFLPNGEPDAYE-DLAKSLAEFL 153 (321)
T ss_pred -cccccccceeccchhcccc-cc-cccHHHHHHHHHhcCCCCceEEEecCHHhHhHhhccccCCchHHH-HHHHHHHHHH
Confidence 45666554 7889999997 32 33444444444433 25899999999999999988776 4566 9999999988
Q ss_pred Hhh
Q 007631 589 RIF 591 (595)
Q Consensus 589 r~~ 591 (595)
+..
T Consensus 154 ~~~ 156 (321)
T cd03310 154 REQ 156 (321)
T ss_pred HHH
Confidence 763
No 37
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.81 E-value=2.7e-19 Score=186.57 Aligned_cols=231 Identities=16% Similarity=0.197 Sum_probs=168.7
Q ss_pred ceecccCceeecceecCCCccccCCcccHHHHHHHHHcC-CCCceEeehHHHHhhhccCCCC-----cCCCCCHHHHHHH
Q 007631 110 TKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALG-METVPVLVGPVSYLLLSKPAKG-----VEKSFSLLSLIDK 183 (595)
Q Consensus 110 tkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g-~~~K~vl~GP~T~l~lsk~~~~-----y~~~~d~~~ll~~ 183 (595)
.-||+.|+|+.+|++..+. .+...+..++..+.+++.+ .+++.+++||+|++..+...+. |..-.+..++++.
T Consensus 63 ~~~~~~~~~p~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~GP~Tla~~l~~~~~~~~~~~~~p~~~~~ll~~ 141 (306)
T cd00465 63 WAFRYYSQAPSVPEIDEEE-DPFREAPALEHITAVRSLEEFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEY 141 (306)
T ss_pred eEEecCCCCCCCCCcccCC-ChhhHHHHHHHHHHHHhccccceEeecCCHHHHHHHHHcccHHHHHHHHChHHHHHHHHH
Confidence 3489999999999886643 1223466788999998774 7889999999999976653222 2100134578999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEeeccccccC---CChH-HHHHHHHHHHHHHcC--CCCCcEEEEeccCCCCcccHHHHhc
Q 007631 184 IIPVYKEVVAELKAAGATWIQFDEPTLVLD---LDSH-KLQAFSDAYSELQSS--LSGLNVLIETYFADVPAETYKILTS 257 (595)
Q Consensus 184 L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d---~~~~-~~~~~~~ay~~l~~~--~~~~~i~l~tyfg~~~~~v~~~l~~ 257 (595)
++.++.+.++++.++||++||+|||++... ++++ ..+.+...++++.+. .....+.+|+|++. .+. ++.+.+
T Consensus 142 i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~~-~~~-~~~l~~ 219 (306)
T cd00465 142 LTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYDA-ADL-LEEMIQ 219 (306)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCCH-HHH-HHHHHH
Confidence 999999999999999999999999999877 3544 334444555554431 12346888999664 455 899999
Q ss_pred CCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCccccccc
Q 007631 258 LKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDL 337 (595)
Q Consensus 258 l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~ 337 (595)
+ ++|++++|+.. +++..+++.++.++.|..||.++++.+. .+++.+.++++.+.++. +.+++|+||+.+.+..+
T Consensus 220 ~-~~d~~~~d~~~--~d~~~~~~~~~~~~~i~Ggv~~~~~~~~--~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~~~ 293 (306)
T cd00465 220 L-GVDVISFDMTV--NEPKEAIEKVGEKKTLVGGVDPGYLPAT--DEECIAKVEELVERLGP-HYIINPDCGLGPDSDYK 293 (306)
T ss_pred h-CcceEeccccc--CCHHHHHHHhCCCEEEECCCCccccCCC--HHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCCCc
Confidence 9 99999999876 2444444457766789999999866444 39999999999998875 89999999998764442
Q ss_pred ccccCCcHHHHhhhhhHH
Q 007631 338 ENETKLDQEIKSWLAFAA 355 (595)
Q Consensus 338 ~~E~~l~~~~~~~laFA~ 355 (595)
++.++....+++
T Consensus 294 ------~enl~a~v~a~~ 305 (306)
T cd00465 294 ------PEHLRAVVQLVD 305 (306)
T ss_pred ------HHHHHHHHHHhh
Confidence 445555555443
No 38
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.66 E-value=1.7e-16 Score=164.70 Aligned_cols=134 Identities=15% Similarity=0.185 Sum_probs=103.4
Q ss_pred CcccccCCCCCcHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCce
Q 007631 432 LPTTTIGSFPQTMDLRRVRREFK---AKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA 508 (595)
Q Consensus 432 ~~tt~VGSfPrp~~l~~ar~~~~---~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~ 508 (595)
+.+|++||||+|+|+++ ++++ .|+++.+++.+ .+++++..|.++|+|++|||.++ ||..+|++.++|=.
T Consensus 4 iv~~~iGsyP~P~~~~k--~~~~~~~~g~~~~e~l~~----~~~~~~~~q~dAGld~~Tdgqlr--Dm~~~fl~~i~~~~ 75 (344)
T PRK06052 4 IIFDDIGSFPLPEGVTR--EWVENAFETREEDEKLFS----VVRSAFQMKIDAGVQVPTYPQFR--DMIEQFLDIIRDEK 75 (344)
T ss_pred EEeccCCCCCCCccccH--HHHhhhhcCCCcHHHHHH----HHHHHHHHHHhcCCccccchHHH--HHHHhHHHHHcCCc
Confidence 56899999999999998 5554 58898888877 89999999999999999999998 99999999998733
Q ss_pred eeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhc-------cC--CCceeeeccHHHHHhhhcCC-CCCC-Ch
Q 007631 509 FTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSM-------TK--RPMKGMLTGPVTILNWSFVR-NDQP-RQ 577 (595)
Q Consensus 509 ~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~-------t~--k~vK~~lpgP~ti~~~s~~~-~y~~-~~ 577 (595)
- |..|-.|.-+ .. .+-++..+.+. |. ++||+++|||+||+.|+|++ +|.+ ++
T Consensus 76 ~------------~~~p~~~~~~----~a-~i~el~~~~~~~~~~~~~~~~~~~VKv~iTGP~tL~~~~f~~~~Y~d~~~ 138 (344)
T PRK06052 76 C------------CEEPYVVKEE----CA-KILELEAIEEVAKEYKEETGETLEVRVCVTGPTELYLQEFGGTIYTDILL 138 (344)
T ss_pred c------------cCCCeeeehh----hh-hHHHHHHHHHHHHHHHHhhCCCCCeEEEecCHHHHHHHHcCCccccchHH
Confidence 2 2222222111 11 11123333222 22 47999999999999999998 8998 78
Q ss_pred hHHHHHHHHHHHhh
Q 007631 578 GINQIQCPVNLRIF 591 (595)
Q Consensus 578 ~~~~~diA~a~r~~ 591 (595)
++++|||.++++.
T Consensus 139 -~la~~ia~~l~~e 151 (344)
T PRK06052 139 -ILAKSVERFVENA 151 (344)
T ss_pred -HHHHHHHHHHHHH
Confidence 9999999999874
No 39
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=99.37 E-value=2.3e-12 Score=134.41 Aligned_cols=156 Identities=21% Similarity=0.165 Sum_probs=111.8
Q ss_pred cccccCCCCC---cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcc-----
Q 007631 433 PTTTIGSFPQ---TMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQL----- 504 (595)
Q Consensus 433 ~tt~VGSfPr---p~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l----- 504 (595)
.|+++| ||| .+||+++..+|-+|++|.+++.+..++--....+.|.++|||.|+.|.|+.-|.+.+-.-.+
T Consensus 1 kt~~lG-yPRiG~~RELK~alE~yW~g~~~~~~L~~~~~~lr~~~w~~q~~agld~ip~gdfs~YD~vLD~~~~~g~iP~ 79 (310)
T PF08267_consen 1 KTHILG-YPRIGPNRELKKALEAYWKGKISEEELEQTAKELRKEHWQLQKEAGLDLIPVGDFSLYDHVLDTAVLLGAIPE 79 (310)
T ss_dssp -EE-S----SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHTT-SBEEES---SS-HHHHHHHHTT---G
T ss_pred CCcccc-CCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCchhhHHHHHHHHhccCCh
Confidence 378999 999 99999999999999999999999999999999999999999999999999999875422211
Q ss_pred ------------------cCcee-eecceeeecCCcc-cCCcEEEeeCCCC--CCCcHHHHHHHHhccCCCceeeeccHH
Q 007631 505 ------------------SGFAF-TVNGWVQSYGSRC-VKPPIIYGDVSRP--KAMTVFWSSMAQSMTKRPMKGMLTGPV 562 (595)
Q Consensus 505 ------------------~G~~~-~~~g~v~~yg~~~-~~~pii~g~I~~~--~~~~~~~~~~aq~~t~k~vK~~lpgP~ 562 (595)
.|..- ...+..++|+++| |..|.+.++..+. ..-.+++++-++++ ..+.|.+|+||+
T Consensus 80 rf~~~~~~~~l~~yFamARG~~~~~a~eMtKWFdTNYHY~VPE~~~~~~f~l~~~~~~~~~~eA~~~-G~~~kpvL~GP~ 158 (310)
T PF08267_consen 80 RFRHADGLDDLDRYFAMARGTDDVPALEMTKWFDTNYHYIVPEITGDTEFKLDSNKLLDEFREAKAL-GINTKPVLPGPV 158 (310)
T ss_dssp GGCT-TSSSSHHHHHHHHHSCCCCT--EEEESTTSS-EEEE-EE-TTS----SCCHHHHHHHHHHHT-TGGEEEEEE-HH
T ss_pred hhccCCCCCCHhheeeeccCCCCCchHHHHHHhccCCCeEceEECCCCceeeCcchHHHHHHHHHhh-hcCCeeEEEcHH
Confidence 11100 0123468899986 7899999987664 34456888888665 478999999999
Q ss_pred HHHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631 563 TILNWSFVRNDQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 563 ti~~~s~~~~y~~~~~~~~~diA~a~r~~ 591 (595)
|++..|.+..+.+.. +++.+|+.+|.+.
T Consensus 159 TfL~Lsk~~~~~~~~-~ll~~l~~vY~~l 186 (310)
T PF08267_consen 159 TFLLLSKNEDGSDPL-DLLDDLLPVYAEL 186 (310)
T ss_dssp HHHHTSEETTCCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHcCcCCCCCHH-HHHHHHHHHHHHH
Confidence 999999988888777 9999999998763
No 40
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=98.98 E-value=9.8e-09 Score=108.35 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=129.2
Q ss_pred CCCceEeehHHHHhhhccCCC-----CcCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCC-ChHH-
Q 007631 149 METVPVLVGPVSYLLLSKPAK-----GVEKSFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDL-DSHK- 218 (595)
Q Consensus 149 ~~~K~vl~GP~T~l~lsk~~~-----~y~~~~d~---~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~-~~~~- 218 (595)
.+++..+.||+|++......+ -| .++ .++++.++....+.++.+.++|++.||++||.....+ +++.
T Consensus 126 ~~v~g~~~gP~t~a~~l~g~~~~~~~~~---~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f 202 (330)
T cd03465 126 VPVIGAVGGPFTLASLLMGASKFLMLLY---TDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDF 202 (330)
T ss_pred eeeeccCCCHHHHHHHHHhHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHH
Confidence 677999999999985322100 11 134 6788888888999999999999999999999776543 5442
Q ss_pred H----HHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEee
Q 007631 219 L----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVD 294 (595)
Q Consensus 219 ~----~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVd 294 (595)
. ..+++.++.+... ...+.+|.| |+.... ++.+.++ ++|.+++|... ++..+++.++ ++....|-||
T Consensus 203 ~e~~~p~~k~i~~~i~~~--g~~~~lH~c-G~~~~~-~~~l~~~-~~d~~~~d~~~---dl~~~~~~~g-~~~~i~G~id 273 (330)
T cd03465 203 KEFSLPYLKKVFDAIKAL--GGPVIHHNC-GDTAPI-LELMADL-GADVFSIDVTV---DLAEAKKKVG-DKACLMGNLD 273 (330)
T ss_pred HHHhhHHHHHHHHHHHHc--CCceEEEEC-CCchhH-HHHHHHh-CCCeEeecccC---CHHHHHHHhC-CceEEEeCcC
Confidence 2 3445555555432 246788888 887766 9999999 99999998764 6666766564 4788888888
Q ss_pred CC-CCCCCCHHHHHHHHHHHHhhcCC--CcEEEeCCCCCc
Q 007631 295 GR-NIWANDLASSLTTLQDLAGTVGK--DKVVVSTSCSLL 331 (595)
Q Consensus 295 gr-n~w~ed~~~~~~~i~~~~~~~~~--~rl~vspsCgL~ 331 (595)
.. .....+.+++.+.++++.+.++. .+.+++|.|++.
T Consensus 274 ~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~ 313 (330)
T cd03465 274 PIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIP 313 (330)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCC
Confidence 87 67778999999999999998765 679999999975
No 41
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=98.68 E-value=4.2e-07 Score=96.63 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=123.1
Q ss_pred cHHHHHHHHH-cC--CCCceEeehHHHHhhhccCC-CCcCC-CCCH---HHHHHHHHHHHHHHHHHHHHcCCCeEEeecc
Q 007631 137 AVQEYKEAKA-LG--METVPVLVGPVSYLLLSKPA-KGVEK-SFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEP 208 (595)
Q Consensus 137 ~~~~~~~a~~-~g--~~~K~vl~GP~T~l~lsk~~-~~y~~-~~d~---~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP 208 (595)
.++..+..++ ++ +++...+.||+|++...... ..+.. ..++ .++++.+.+...+.++.+.++|++.||++||
T Consensus 123 ~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~ 202 (339)
T PRK06252 123 VLEAIKILKEKVGEEVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADP 202 (339)
T ss_pred HHHHHHHHHHHcCCcCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 3444444443 33 67899999999987521110 11100 0123 3457777778888889899999999999999
Q ss_pred ccccC-CChHHH-HHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCc
Q 007631 209 TLVLD-LDSHKL-QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGK 286 (595)
Q Consensus 209 ~L~~d-~~~~~~-~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k 286 (595)
.-..+ ++++.. +.....++++.+........+|.| |+.... ++.+.++ ++|++++|... ++..+++.++ ++
T Consensus 203 ~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~c-G~~~~~-l~~~~~~-g~d~~~~d~~~---dl~~~~~~~g-~~ 275 (339)
T PRK06252 203 SASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHIC-GDLTSI-LEEMADC-GFDGISIDEKV---DVKTAKENVG-DR 275 (339)
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEEC-CCchHH-HHHHHhc-CCCeeccCCCC---CHHHHHHHhC-CC
Confidence 65433 455433 222333333333211113456666 776665 8999999 99999988643 5666665564 56
Q ss_pred EEEEeEeeC-CCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 287 YLFAGVVDG-RNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 287 ~l~lGVVdg-rn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
....|-||. ......+++++.+.++++.+. | ..++||.||+.
T Consensus 276 ~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~-g--~~Il~~gcgi~ 318 (339)
T PRK06252 276 AALIGNVSTSFTLLNGTPEKVKAEAKKCLED-G--VDILAPGCGIA 318 (339)
T ss_pred eEEEeccCcHHHhcCCCHHHHHHHHHHHHHc-C--CCEEcCCCCCC
Confidence 888899999 777789999999999999873 3 46999999985
No 42
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=98.68 E-value=4.9e-07 Score=96.19 Aligned_cols=183 Identities=12% Similarity=0.148 Sum_probs=124.2
Q ss_pred cHHHHHHHHHc-C--CCCceEeehHHHHhhhccCC----CCcCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCeEEeecc
Q 007631 137 AVQEYKEAKAL-G--METVPVLVGPVSYLLLSKPA----KGVEKSFS-LLSLIDKIIPVYKEVVAELKAAGATWIQFDEP 208 (595)
Q Consensus 137 ~~~~~~~a~~~-g--~~~K~vl~GP~T~l~lsk~~----~~y~~~~d-~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP 208 (595)
.++..+.+++. | ++++..+.||+|++...... ..+....+ ..++++.+.++..+.++.+.++|+..||+.||
T Consensus 123 ~l~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp 202 (340)
T TIGR01463 123 VLEAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADP 202 (340)
T ss_pred HHHHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCC
Confidence 45666666643 3 67888999999987521100 01100111 23467777788888889899999999999999
Q ss_pred ccccC-CChHH-----HHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhC
Q 007631 209 TLVLD-LDSHK-----LQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEF 282 (595)
Q Consensus 209 ~L~~d-~~~~~-----~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~ 282 (595)
.-..+ ++++. ...+++.++.+... . ....+|.| |+.... ++.+.++ ++|++++|... +++..++.+
T Consensus 203 ~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~-g-~~~ilH~C-G~~~~~-~~~l~~~-g~d~ls~d~~~---~l~~~~~~~ 274 (340)
T TIGR01463 203 FASSDLISPETYKEFGLPYQKRLFAYIKEI-G-GITVLHIC-GFTQPI-LRDIANN-GCFGFSVDMKP---GMDHAKRVI 274 (340)
T ss_pred ccCccccCHHHHHHHHHHHHHHHHHHHHhc-C-CceEEEEC-CCchhh-HHHHHHh-CCCEEeecCCC---CHHHHHHHc
Confidence 75433 45442 23445555555431 1 23456667 766665 8999999 99999988654 466665546
Q ss_pred CCCcEEEEeEeeCCC-CCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 283 PLGKYLFAGVVDGRN-IWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 283 p~~k~l~lGVVdgrn-~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
+ ++.+..|-||... ....+.+++.+.++++.+. .+.+++|.||+.
T Consensus 275 g-~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~~---~~~Il~~gcgi~ 320 (340)
T TIGR01463 275 G-GQASLVGNLSPFSTLMNGTPEKVKKLAKEVLYN---GGDIVMPGCDID 320 (340)
T ss_pred C-CceEEEecCChHHHhcCCCHHHHHHHHHHHHHc---CCeEECCCCCCC
Confidence 4 5778899998743 4467999999999998863 468999999995
No 43
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=98.28 E-value=1.4e-05 Score=84.61 Aligned_cols=181 Identities=13% Similarity=0.173 Sum_probs=120.3
Q ss_pred cHHHHHHHHH-cC--CCCceEeehHHHHhhhccCCC-CcC-CCCCH---HHHHHHHHHHHHHHHHHHHHcCCCeEEeecc
Q 007631 137 AVQEYKEAKA-LG--METVPVLVGPVSYLLLSKPAK-GVE-KSFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEP 208 (595)
Q Consensus 137 ~~~~~~~a~~-~g--~~~K~vl~GP~T~l~lsk~~~-~y~-~~~d~---~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP 208 (595)
.++..+..++ +| +++-..+.||+|++......+ .+. -..++ .++++.+.+...+.++.+.++|++.||+.+|
T Consensus 114 v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~ 193 (326)
T cd03307 114 VLEAIKILKEKYGEEVPVIGGMTGPASLASHLAGVENFLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADP 193 (326)
T ss_pred HHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCC
Confidence 3444544443 33 567888899999875211001 000 00122 3566777777778888888999999999999
Q ss_pred ccccC-CChHHHH-----HHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhC
Q 007631 209 TLVLD-LDSHKLQ-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEF 282 (595)
Q Consensus 209 ~L~~d-~~~~~~~-----~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~ 282 (595)
.-... ++++..+ .+++.++.+.. ..+.+|.| |+.... ++.+.++ ++|++++|... +++.+++.+
T Consensus 194 ~a~~~~isp~~f~e~~~p~~k~i~~~i~~----~~~ilh~c-G~~~~~-l~~~~~~-g~d~~~~d~~~---dl~e~~~~~ 263 (326)
T cd03307 194 TASPELISPEFYEEFALPYHKKIVKELHG----CPTILHIC-GNTTPI-LEYIAQC-GFDGISVDEKV---DVKTAKEIV 263 (326)
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHhc----CCcEEEEC-CCChhH-HHHHHHc-CCCeecccccC---CHHHHHHHc
Confidence 65433 2554332 33444444432 23556666 666555 9999999 99999988643 576666556
Q ss_pred CCCcEEEEeEeeCC-CCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 283 PLGKYLFAGVVDGR-NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 283 p~~k~l~lGVVdgr-n~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
+ ++....|=||.. ..-..+++++.+.++++.+. | ..++||.|++.
T Consensus 264 g-~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~-g--~~Il~~Gc~i~ 309 (326)
T cd03307 264 G-GRAALIGNVSPSQTLLNGTPEDVKAEARKCLED-G--VDILAPGCGIA 309 (326)
T ss_pred C-CceEEEeCCChHHHhcCCCHHHHHHHHHHHHHc-c--CCEecCcCCCC
Confidence 4 467888988885 56678999999999999875 3 36899999984
No 44
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=98.25 E-value=1.5e-05 Score=84.71 Aligned_cols=188 Identities=16% Similarity=0.178 Sum_probs=117.3
Q ss_pred cHHHHHHHHH-c--CCCCceEeehHHHHhhhcc---CCC-C----cCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 007631 137 AVQEYKEAKA-L--GMETVPVLVGPVSYLLLSK---PAK-G----VEKSF-SLLSLIDKIIPVYKEVVAELKAAGATWIQ 204 (595)
Q Consensus 137 ~~~~~~~a~~-~--g~~~K~vl~GP~T~l~lsk---~~~-~----y~~~~-d~~~ll~~L~~aY~~~l~~L~~aG~~~IQ 204 (595)
.++..+.+++ . ..++-..+.||+|++.... ..+ . |. .. .-.++++.+.+...+.++.+.++|++.|+
T Consensus 122 ~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~-~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~ 200 (343)
T PF01208_consen 122 VLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRGFEEFLMDLYD-DPEKVHELLDKITDFIIEYAKAQIEAGADGIF 200 (343)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCCHHHHHHHHHh-CchhHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3444555554 3 3556677899999985322 111 0 10 00 12457778888888888999999999999
Q ss_pred eeccccccCCChHHH-----HHHHHHHHHHHcCCCCC-cEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhH
Q 007631 205 FDEPTLVLDLDSHKL-----QAFSDAYSELQSSLSGL-NVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLI 278 (595)
Q Consensus 205 iDEP~L~~d~~~~~~-----~~~~~ay~~l~~~~~~~-~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l 278 (595)
+-+ ....-++++.. ..+++.++.+.+. .. .+.+|+| |+.... ++.+.++ ++|++++|.. .++...
T Consensus 201 ~~d-~~~~~isp~~f~e~~~P~~k~i~~~i~~~--g~~~~~lH~c-G~~~~~-~~~l~~~-g~d~~~~~~~---~~~~~~ 271 (343)
T PF01208_consen 201 IFD-SSGSLISPEMFEEFILPYLKKIIDAIKEA--GKDPVILHIC-GNTTPI-LDDLADL-GADVLSVDEK---VDLAEA 271 (343)
T ss_dssp EEE-TTGGGS-HHHHHHHTHHHHHHHHHHHHHH--ETE-EEEEET-THG-GG-HHHHHTS-S-SEEEE-TT---S-HHHH
T ss_pred ccc-cccCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCceEEEEC-CchHHH-HHHHHhc-CCCEEEEcCC---CCHHHH
Confidence 998 44444566543 2344555555442 13 6788888 887776 9999999 9999998743 356444
Q ss_pred hhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhh--cCCCcEEEeCCCCCcccccccc
Q 007631 279 KTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGT--VGKDKVVVSTSCSLLHTAVDLE 338 (595)
Q Consensus 279 ~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~--~~~~rl~vspsCgL~h~P~~~~ 338 (595)
++.+. ++.+..|=||....-.-+.+++.+.++++.+. .+..+.+++|+|++ |.++.
T Consensus 272 ~~~~~-~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~i---p~~~p 329 (343)
T PF01208_consen 272 KRKLG-DKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSPGCGI---PPDTP 329 (343)
T ss_dssp HHHHT-TSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEBSS------TTS-
T ss_pred HHHhC-CCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcC---CCCcC
Confidence 44465 67888999999545449999999999999883 34568999999996 55543
No 45
>PLN02433 uroporphyrinogen decarboxylase
Probab=98.25 E-value=3.7e-05 Score=82.26 Aligned_cols=185 Identities=14% Similarity=0.166 Sum_probs=121.9
Q ss_pred cHHHHHHHHH-cC--CCCceEeehHHHHhhh-cc--CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHcCCCe
Q 007631 137 AVQEYKEAKA-LG--METVPVLVGPVSYLLL-SK--PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGATW 202 (595)
Q Consensus 137 ~~~~~~~a~~-~g--~~~K~vl~GP~T~l~l-sk--~~~~y~~-----~~d~---~~ll~~L~~aY~~~l~~L~~aG~~~ 202 (595)
.++..+..++ +| +++=..+.||+|.+.. .. ..+.+.. ..++ .++++.+++...+.++.+.++|+..
T Consensus 116 ~leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~ 195 (345)
T PLN02433 116 VGEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQV 195 (345)
T ss_pred HHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 4455555553 33 5667778999998752 11 0000000 0122 2355555666666677777899999
Q ss_pred EEeeccccccCCChHHHH-----HHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhh
Q 007631 203 IQFDEPTLVLDLDSHKLQ-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDL 277 (595)
Q Consensus 203 IQiDEP~L~~d~~~~~~~-----~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~ 277 (595)
|||.+| ++.-++++..+ .+++.++.+....+...+.+|.| |.. .. ++.+.++ +++++++|.. .++..
T Consensus 196 i~i~d~-~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c-G~~-~~-~~~~~~~-~~~~i~~d~~---~dl~e 267 (345)
T PLN02433 196 VQIFDS-WAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN-GSG-GL-LERLAGT-GVDVIGLDWT---VDMAD 267 (345)
T ss_pred EEEecC-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-CCH-HH-HHHHHhc-CCCEEEcCCC---CCHHH
Confidence 999999 66567766433 33455555543211235677766 543 44 8999999 9999999975 35666
Q ss_pred HhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 278 IKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 278 l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
.++.++ ++.+..|=||. ....-+.+++.+.++++++..+....+++|.|++.
T Consensus 268 ~~~~~g-~~~~l~GNi~p-~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~ 319 (345)
T PLN02433 268 ARRRLG-SDVAVQGNVDP-AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVL 319 (345)
T ss_pred HHHHhC-CCeEEEeCCCc-hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC
Confidence 665564 57888997776 35577899999999999987665569999999985
No 46
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=98.12 E-value=0.00011 Score=78.44 Aligned_cols=185 Identities=13% Similarity=0.115 Sum_probs=119.4
Q ss_pred cHHHHHHHHHc-C--CCCceEeehHHHHhhh-cc--CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHcCCCe
Q 007631 137 AVQEYKEAKAL-G--METVPVLVGPVSYLLL-SK--PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGATW 202 (595)
Q Consensus 137 ~~~~~~~a~~~-g--~~~K~vl~GP~T~l~l-sk--~~~~y~~-----~~d~---~~ll~~L~~aY~~~l~~L~~aG~~~ 202 (595)
.++..+..++. | +++=..+.||+|++.. .. ...++.. ..++ ..+++.+++...+.++.+.++|++.
T Consensus 123 ~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~ 202 (346)
T PRK00115 123 VLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQA 202 (346)
T ss_pred HHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 44555555533 2 4556667899999753 21 0011000 0122 3455666666677777788899999
Q ss_pred EEeeccccccCCChHHHH-----HHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhh
Q 007631 203 IQFDEPTLVLDLDSHKLQ-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDL 277 (595)
Q Consensus 203 IQiDEP~L~~d~~~~~~~-----~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~ 277 (595)
||+-|| ++.-++++..+ .+++.++.+....+... .+|-| |+.... ++.+.++ ++++|++|.. .++..
T Consensus 203 i~i~d~-~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~-ilh~c-g~~~~~-~~~~~~~-~~~~is~d~~---~dl~~ 274 (346)
T PRK00115 203 VQIFDS-WAGALSPADYREFVLPYMKRIVAELKREHPDVP-VILFG-KGAGEL-LEAMAET-GADVVGLDWT---VDLAE 274 (346)
T ss_pred EEEecC-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc-CCcHHH-HHHHHhc-CCCEEeeCCC---CCHHH
Confidence 999999 44446665443 33444444443211122 23333 555555 8999999 9999999974 45666
Q ss_pred HhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 278 IKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 278 l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
.++.++ ++....|=||. ..-..+.+++.+..+++++..+....+++|.|++.
T Consensus 275 ~k~~~g-~~~~i~Gni~p-~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~ 326 (346)
T PRK00115 275 ARRRVG-DKKALQGNLDP-AVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGIL 326 (346)
T ss_pred HHHHcC-CCeEEEeCCCh-hHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCC
Confidence 666564 56888898887 45567899999999999987655679999999985
No 47
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=98.11 E-value=1.6e-06 Score=90.65 Aligned_cols=112 Identities=21% Similarity=0.144 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeC-CCCCCCcHHHHH
Q 007631 466 TIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDV-SRPKAMTVFWSS 544 (595)
Q Consensus 466 ~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I-~~~~~~~~~~~~ 544 (595)
.-.+++.+++..|+ +|+|++++|| +++..|++.|.|.. .++++.+...|...++. +..-++.+++++
T Consensus 27 ~~~~~~~~~~~~~~-~g~D~~~~~~----~~~~~~~ealg~~~-------~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~ 94 (306)
T cd00465 27 SKAEWGITLVEPEE-IPLDVIPVHE----DDVLKVAQALGEWA-------FRYYSQAPSVPEIDEEEDPFREAPALEHIT 94 (306)
T ss_pred CCchhhceeecccc-CCCCeeeecC----cceeehhhhcCceE-------EecCCCCCCCCCcccCCChhhHHHHHHHHH
Confidence 34456777888888 9999999999 78899999997743 33444443334444444 334467889999
Q ss_pred HHHhccCCCceeeeccHHHHHhhhcCCCC---------CCChhHHHHHHHHHHHh
Q 007631 545 MAQSMTKRPMKGMLTGPVTILNWSFVRND---------QPRQGINQIQCPVNLRI 590 (595)
Q Consensus 545 ~aq~~t~k~vK~~lpgP~ti~~~s~~~~y---------~~~~~~~~~diA~a~r~ 590 (595)
.+++.+++|+|++++||+|++.++.+..+ .... +++.+++.++++
T Consensus 95 ~~~~~~~~~v~~~~~GP~Tla~~l~~~~~~~~~~~~~p~~~~-~ll~~i~~~~~~ 148 (306)
T cd00465 95 AVRSLEEFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMH-ELIEYLTEFILE 148 (306)
T ss_pred HHHhccccceEeecCCHHHHHHHHHcccHHHHHHHHChHHHH-HHHHHHHHHHHH
Confidence 99999999999999999999988865543 3334 667777766654
No 48
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=98.05 E-value=0.00014 Score=77.54 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=118.1
Q ss_pred ccHHHHHHHHHc-C--CCCceEeehHHHHhhh-cc--CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHcCCC
Q 007631 136 KAVQEYKEAKAL-G--METVPVLVGPVSYLLL-SK--PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGAT 201 (595)
Q Consensus 136 ~~~~~~~~a~~~-g--~~~K~vl~GP~T~l~l-sk--~~~~y~~-----~~d~---~~ll~~L~~aY~~~l~~L~~aG~~ 201 (595)
..++..+.+++. + +++=..+.||+|++.. .. ...++.. ..++ .++++.+++...+.++.+.++|++
T Consensus 116 ~~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad 195 (338)
T TIGR01464 116 YVYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQ 195 (338)
T ss_pred HHHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555555543 2 5667778999998742 21 0000000 0122 235555556666777777889999
Q ss_pred eEEeeccccccCCChHHHH-----HHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChh
Q 007631 202 WIQFDEPTLVLDLDSHKLQ-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLD 276 (595)
Q Consensus 202 ~IQiDEP~L~~d~~~~~~~-----~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~ 276 (595)
.|||-|| ++.-++++..+ .+++.++.+....+...+ ++-| |+.... ++.+.++ +++++++|.. .++.
T Consensus 196 ~i~i~d~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~c-g~~~~~-~~~~~~~-~~~~~s~d~~---~dl~ 267 (338)
T TIGR01464 196 AVQIFDS-WAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFA-KGAGHL-LEELAET-GADVVGLDWT---VDLK 267 (338)
T ss_pred EEEEECC-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEe-CCcHHH-HHHHHhc-CCCEEEeCCC---CCHH
Confidence 9999999 45446655433 334555555432111222 3333 444454 8999999 9999999974 4566
Q ss_pred hHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcC-CCcEEEeCCCCCc
Q 007631 277 LIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG-KDKVVVSTSCSLL 331 (595)
Q Consensus 277 ~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~-~~rl~vspsCgL~ 331 (595)
..++.++ +|....|=||..-. ..+.+++.+..+++++..+ ....++||.|++.
T Consensus 268 e~~~~~~-~~~~i~Gni~p~~l-~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~ 321 (338)
T TIGR01464 268 EARKRVG-PGVAIQGNLDPAVL-YAPEEALEEKVEKILEAFGGKSRYIFNLGHGIL 321 (338)
T ss_pred HHHHHhC-CCeeEEeCCChHHh-cCCHHHHHHHHHHHHHHhccCCCceecCCCcCC
Confidence 6665564 56788888887544 6688999999999998764 3458999999985
No 49
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=98.01 E-value=0.00019 Score=76.34 Aligned_cols=185 Identities=16% Similarity=0.152 Sum_probs=117.8
Q ss_pred cHHHHHHHHHc-C--CCCceEeehHHHHhhhcc---CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHcCCCe
Q 007631 137 AVQEYKEAKAL-G--METVPVLVGPVSYLLLSK---PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGATW 202 (595)
Q Consensus 137 ~~~~~~~a~~~-g--~~~K~vl~GP~T~l~lsk---~~~~y~~-----~~d~---~~ll~~L~~aY~~~l~~L~~aG~~~ 202 (595)
.++..+..++. | +++=.++.||+|++.... ...++.. ..++ .++++.+++...+.++.+.++|++.
T Consensus 114 ~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~ 193 (335)
T cd00717 114 VYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQA 193 (335)
T ss_pred HHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 44455555533 3 455667789999885321 1011000 0122 3455556666667777777899999
Q ss_pred EEeeccccccCCChHHHH-----HHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhh
Q 007631 203 IQFDEPTLVLDLDSHKLQ-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDL 277 (595)
Q Consensus 203 IQiDEP~L~~d~~~~~~~-----~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~ 277 (595)
||+-|| ++.-++++..+ .+++.++.+....+...+ +|-| |+-... ++.+.++ +++++++|.. .++..
T Consensus 194 i~i~d~-~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-lh~c-g~~~~~-~~~~~~~-~~~~~s~d~~---~dl~e 265 (335)
T cd00717 194 VQIFDS-WAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-ILFA-KGAGGL-LEDLAQL-GADVVGLDWR---VDLDE 265 (335)
T ss_pred EEEeCc-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEc-CCCHHH-HHHHHhc-CCCEEEeCCC---CCHHH
Confidence 999999 44446655433 334555555442111222 3323 333454 9999999 9999999965 35666
Q ss_pred HhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEeCCCCCc
Q 007631 278 IKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (595)
Q Consensus 278 l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~-~rl~vspsCgL~ 331 (595)
.++.++ +|.+..|=||.. ....+.+++.+..+++++..+. .+.++||.|++.
T Consensus 266 ~k~~~g-~~~~i~Gni~p~-~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~ 318 (335)
T cd00717 266 ARKRLG-PKVALQGNLDPA-LLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGIL 318 (335)
T ss_pred HHHHhC-CCeEEEeCCChh-hhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCC
Confidence 666564 578888978874 4567789999999999987764 579999999974
No 50
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=97.71 E-value=0.00087 Score=71.07 Aligned_cols=174 Identities=10% Similarity=0.108 Sum_probs=117.5
Q ss_pred CCceEeehHHHHhhhccC-C----CCcCCCC-CHHHHHHHHHHHHHHHHHHHHHc-CCCeEEeecccccc---CCChHHH
Q 007631 150 ETVPVLVGPVSYLLLSKP-A----KGVEKSF-SLLSLIDKIIPVYKEVVAELKAA-GATWIQFDEPTLVL---DLDSHKL 219 (595)
Q Consensus 150 ~~K~vl~GP~T~l~lsk~-~----~~y~~~~-d~~~ll~~L~~aY~~~l~~L~~a-G~~~IQiDEP~L~~---d~~~~~~ 219 (595)
..-+.+.||+|.+.+-.. . .-|. .. .-.++++.++++..+.++...++ |++.||+-|+.=.. -+++++.
T Consensus 114 ~~~~~~~Gpf~~a~~l~g~e~~~~~l~~-~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f 192 (321)
T cd03309 114 IDVPLPGGVFERFRLRMSMEDALMALYE-EPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATF 192 (321)
T ss_pred eccCCCCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHH
Confidence 345788999998643210 0 0010 01 12457777888888888877777 99999997752221 1455543
Q ss_pred H-----HHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEee
Q 007631 220 Q-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVD 294 (595)
Q Consensus 220 ~-----~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVd 294 (595)
+ .+++.++.+.... ...+.++.| |+.... ++.+.++ ++|.+++|... .++..+++.++ ++....|-+|
T Consensus 193 ~efv~P~~krIi~~ik~~~-g~piilH~c-G~~~~~-l~~~~e~-g~dvl~~d~~~--~dl~eak~~~g-~k~~l~GNlD 265 (321)
T cd03309 193 REFILPRMQRIFDFLRSNT-SALIVHHSC-GAAASL-VPSMAEM-GVDSWNVVMTA--NNTAELRRLLG-DKVVLAGAID 265 (321)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCceEEEeC-CCcHHH-HHHHHHc-CCCEEEecCCC--CCHHHHHHHhC-CCeEEEcCCC
Confidence 2 3345555554321 234677777 765555 9999999 99999999754 36766666564 5788899999
Q ss_pred CCCCCCCC-HHHHHHHHHHHHhhcCC-CcEEEeCCCCCc
Q 007631 295 GRNIWAND-LASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (595)
Q Consensus 295 grn~w~ed-~~~~~~~i~~~~~~~~~-~rl~vspsCgL~ 331 (595)
....-... .+++.+.++++.+.++. .+.+.+|+|++-
T Consensus 266 p~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~ 304 (321)
T cd03309 266 DVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLP 304 (321)
T ss_pred hHHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCC
Confidence 76554444 78899999999998886 789999999974
No 51
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=96.60 E-value=0.037 Score=59.27 Aligned_cols=187 Identities=16% Similarity=0.146 Sum_probs=119.6
Q ss_pred cccHHHHHHHHH-cC--CCCceEeehHHHHh-hhcc--CCCCcCC-------CCC-HHHHHHHHHHHHHHHHHHHHHcCC
Q 007631 135 HKAVQEYKEAKA-LG--METVPVLVGPVSYL-LLSK--PAKGVEK-------SFS-LLSLIDKIIPVYKEVVAELKAAGA 200 (595)
Q Consensus 135 ~~~~~~~~~a~~-~g--~~~K~vl~GP~T~l-~lsk--~~~~y~~-------~~d-~~~ll~~L~~aY~~~l~~L~~aG~ 200 (595)
+..++..+-+++ ++ .+.=.-.-||+|++ ++.. .++.|.. ..+ -..|++.++++..+-++...++|+
T Consensus 124 ~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGA 203 (352)
T COG0407 124 PYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGA 203 (352)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 446666766663 34 34455566899987 3321 1111100 011 246888999999999999999999
Q ss_pred CeEEeeccccccCCChHHHH-----HHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCCh
Q 007631 201 TWIQFDEPTLVLDLDSHKLQ-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTL 275 (595)
Q Consensus 201 ~~IQiDEP~L~~d~~~~~~~-----~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l 275 (595)
+.|||.+.. +..++..+-+ ...+..+.+....+.+. +++-| ++.... ++.+.+. ++|++++|+.-+ +
T Consensus 204 davqifDsW-~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~p-ii~f~-~ga~~~-l~~m~~~-g~d~l~vdw~v~---l 275 (352)
T COG0407 204 DAVQIFDSW-AGVLSMIDYDEFVLPYMKRIVREVKEVKGGVP-VIHFC-KGAGHL-LEDMAKT-GFDVLGVDWRVD---L 275 (352)
T ss_pred CEEEeeccc-cccCCcccHHHHhhhHHHHHHHHHHHhCCCCc-EEEEC-CCcHHH-HHHHHhc-CCcEEeeccccC---H
Confidence 999999983 4333333333 33333344433211111 22222 333444 8888999 999999998654 4
Q ss_pred hhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEeCCCCCc
Q 007631 276 DLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (595)
Q Consensus 276 ~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~-~rl~vspsCgL~ 331 (595)
...++.+ .++.-.-|=+|. .+...+.+++.+..+++++-.+. ...++|+-||..
T Consensus 276 ~~a~~~~-~~~~~lqGNldP-~lL~~~~~~i~~~~~~iL~~~~~~~~~IfnlGhGI~ 330 (352)
T COG0407 276 KEAKKRL-GDKVALQGNLDP-ALLYAPPEAIKEEVKRILEDGGDGSGYIFNLGHGIL 330 (352)
T ss_pred HHHHHHh-CCCceEEeccCh-HhhcCCHHHHHHHHHHHHHHhccCCCceecCCCCcC
Confidence 4444434 234678898888 88888999999988888875443 479999999985
No 52
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=95.69 E-value=0.25 Score=53.69 Aligned_cols=173 Identities=12% Similarity=0.077 Sum_probs=111.7
Q ss_pred CCCceEeehHHH-HhhhccC-C----CCcCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCCe-EEeeccc-cccCCChHHH
Q 007631 149 METVPVLVGPVS-YLLLSKP-A----KGVEKSF-SLLSLIDKIIPVYKEVVAELKAAGATW-IQFDEPT-LVLDLDSHKL 219 (595)
Q Consensus 149 ~~~K~vl~GP~T-~l~lsk~-~----~~y~~~~-d~~~ll~~L~~aY~~~l~~L~~aG~~~-IQiDEP~-L~~d~~~~~~ 219 (595)
.++=..+.||+| +...-.. . .-|. .. .-.++++.+++.-.+.++...++|+.- |-+.+|. +..-++++..
T Consensus 171 vpi~~~~~gPf~~la~~l~g~~~~~~~l~~-~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f 249 (378)
T cd03308 171 LNAGGVSEAPFDIIGDYLRGFKGISIDLRR-RPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQF 249 (378)
T ss_pred cccceeEeCChHHHHHHHhCHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHH
Confidence 567788999997 5421110 0 0010 01 123566777777777788888999983 4444453 3334565543
Q ss_pred H-----HHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCcc-EEEEEeecCCCChhhHhhhCCCCcEEEEeEe
Q 007631 220 Q-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT-GFGFDLIRGTKTLDLIKTEFPLGKYLFAGVV 293 (595)
Q Consensus 220 ~-----~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd-~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVV 293 (595)
+ .+++..+.+... ...+.+|.| |+.... ++.+.++ +.+ .++++.. .++...++.++ ++....|=|
T Consensus 250 ~ef~~P~~k~i~~~i~~~--g~~~ilh~c-G~~~~~-l~~l~~~-g~~~v~~~~~~---~dl~~ak~~~g-~~~~i~GNl 320 (378)
T cd03308 250 EKFYWPSFKKVVEGLAAR--GQRIFLFFE-GDWERY-LEYLQEL-PKGKTVGLFEY---GDPKKVKEKLG-DKKCIAGGF 320 (378)
T ss_pred HHHHHHHHHHHHHHHHhc--CCCEEEEcC-CCcHHH-HHHHHhc-CCCcEEEcCCC---CCHHHHHHHhC-CCEEEEcCC
Confidence 3 345555555432 245667767 766665 8999999 887 5555432 46776666565 567778877
Q ss_pred eCCCCCCCCHHHHHHHHHHHHhhcC-CCcEEEeCCCCCc
Q 007631 294 DGRNIWANDLASSLTTLQDLAGTVG-KDKVVVSTSCSLL 331 (595)
Q Consensus 294 dgrn~w~ed~~~~~~~i~~~~~~~~-~~rl~vspsCgL~ 331 (595)
|.--...-+++++.+.++++++..+ ....+++|.||+.
T Consensus 321 ~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~ 359 (378)
T cd03308 321 PTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPII 359 (378)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCC
Confidence 7764444589999999999998765 3569999999996
No 53
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=92.79 E-value=2.4 Score=40.97 Aligned_cols=110 Identities=20% Similarity=0.279 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEE
Q 007631 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD 267 (595)
+.+.+.++.+.|+++||+-+| +++.++...+.+....+.... +..++|+.+ .+....+ ++||+||.
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k----~~~~~~~~~~a~~l~~~~~~~-~~~liin~~--------~~la~~~-~~dGvHl~ 79 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREK----DLSDEELLELARRLAELCQKY-GVPLIINDR--------VDLALEL-GADGVHLG 79 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-S----SS-HHHHHHHHHHHHHHHHHT-TGCEEEES---------HHHHHHC-T-SEEEEB
T ss_pred HHHHHHHHHHCCCcEEEEcCC----CCCccHHHHHHHHHHHHhhcc-eEEEEecCC--------HHHHHhc-CCCEEEec
Confidence 445566677889999999999 444444443333333333222 357888743 5666778 99999998
Q ss_pred eecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
-..- .....+..+++++.+++.+ -+.++ ++++. ..|.|-+.+||
T Consensus 80 ~~~~--~~~~~r~~~~~~~~ig~S~--------h~~~e----~~~a~-~~g~dYv~~gp 123 (180)
T PF02581_consen 80 QSDL--PPAEARKLLGPDKIIGASC--------HSLEE----AREAE-ELGADYVFLGP 123 (180)
T ss_dssp TTSS--SHHHHHHHHTTTSEEEEEE--------SSHHH----HHHHH-HCTTSEEEEET
T ss_pred cccc--chHHhhhhcccceEEEeec--------CcHHH----HHHhh-hcCCCEEEECC
Confidence 6432 2333433466778887766 34444 33333 35668899998
No 54
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=88.68 E-value=3 Score=41.62 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=62.6
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeec
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
.++++.++|+.+||+-++-+ +..+...+......+.+.. +..++|+.. ++....+ +.||+||...+
T Consensus 24 ~l~~~l~~G~~~vqLR~k~~----~~~~~~~la~~l~~~~~~~-~~~liInd~--------~~lA~~~-~adGVHlg~~d 89 (211)
T PRK03512 24 WIERLLDAGVRTLQLRIKDR----RDEEVEADVVAAIALGRRY-QARLFINDY--------WRLAIKH-QAYGVHLGQED 89 (211)
T ss_pred HHHHHHhCCCCEEEEcCCCC----CHHHHHHHHHHHHHHHHHh-CCeEEEeCH--------HHHHHHc-CCCEEEcChHh
Confidence 47888899999999998854 4444444444333343322 356777632 5666778 99999997533
Q ss_pred CCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 271 GTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 271 ~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
- .....+..++.++.|++.+ .+.+++ .++. ..|.|-+.++|
T Consensus 90 ~--~~~~~r~~~~~~~~iG~S~--------H~~~e~----~~A~-~~gaDYi~lgp 130 (211)
T PRK03512 90 L--ETADLNAIRAAGLRLGVST--------HDDMEI----DVAL-AARPSYIALGH 130 (211)
T ss_pred C--CHHHHHHhcCCCCEEEEeC--------CCHHHH----HHHh-hcCCCEEEECC
Confidence 2 1233333345555554433 344443 3332 24667788887
No 55
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=87.21 E-value=9.8 Score=36.29 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEE
Q 007631 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (595)
Q Consensus 187 aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~l 266 (595)
.+.+.++++.++|+.+||||.+- .+......+.+.+..+.... +.++++.. . ++..... ++|++|+
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~----~~~~~~~~~~~~i~~~~~~~-~~~l~~~~-------~-~~~a~~~-g~~~vh~ 78 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKD----LSARELLELARALRELCRKY-GVPLIIND-------R-VDLALAV-GADGVHL 78 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHh-CCeEEEeC-------h-HHHHHHc-CCCEEec
Confidence 34577888889999999999873 33222222222222222211 24565542 2 5667778 9999999
Q ss_pred EeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 267 DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 267 D~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
..... ....+....+.++.+++.+ .+.++ +.++.+ .|.+-+.++|
T Consensus 79 ~~~~~--~~~~~~~~~~~~~~~g~~~--------~t~~~----~~~~~~-~g~d~i~~~~ 123 (196)
T cd00564 79 GQDDL--PVAEARALLGPDLIIGVST--------HSLEE----ALRAEE-LGADYVGFGP 123 (196)
T ss_pred CcccC--CHHHHHHHcCCCCEEEeeC--------CCHHH----HHHHhh-cCCCEEEECC
Confidence 85332 2233333234455555443 23333 333332 4667888865
No 56
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=84.25 E-value=15 Score=36.91 Aligned_cols=110 Identities=12% Similarity=0.143 Sum_probs=62.9
Q ss_pred HHHHHHHHHcC-CCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEE
Q 007631 189 KEVVAELKAAG-ATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 189 ~~~l~~L~~aG-~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD 267 (595)
.+.++++.+.| +++||+=|+.+ +..+...+.+....+.... +..++|.. . ++....+ +.||+||-
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l----~~~~~~~~a~~l~~l~~~~-gv~liINd-------~-~dlA~~~-~adGVHLg 94 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGL----DEATFQKQAEKLVPVIQEA-GAAALIAG-------D-SRIAGRV-KADGLHIE 94 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCC----CHHHHHHHHHHHHHHHHHh-CCEEEEeC-------H-HHHHHHh-CCCEEEEC
Confidence 35666777889 79999998854 4444433444444443322 25677752 2 6666778 99999996
Q ss_pred eecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
-.. ..+..+++.++.++.|++.+.+ +.++.. ++. ..|+|=|.++|
T Consensus 95 ~~d--~~~~~~r~~~~~~~iiG~s~~~-------s~~~a~----~A~-~~gaDYv~~Gp 139 (221)
T PRK06512 95 GNL--AALAEAIEKHAPKMIVGFGNLR-------DRHGAM----EIG-ELRPDYLFFGK 139 (221)
T ss_pred ccc--cCHHHHHHhcCCCCEEEecCCC-------CHHHHH----Hhh-hcCCCEEEECC
Confidence 322 1355555445455554433232 233322 232 36778888887
No 57
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=83.40 E-value=7.9 Score=41.69 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEE
Q 007631 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD 267 (595)
+.+.+.++.++|+.+||+-++-+ +..+...+.+.+..+.... +..++|.. . .+....+ ++||+||-
T Consensus 159 ll~~l~~al~~Gv~~VQLR~K~~----~~~~~~~~a~~L~~l~~~~-~~~lIIND-------~-vdlAl~~-~aDGVHLg 224 (347)
T PRK02615 159 LLEVVEAALKGGVTLVQYRDKTA----DDRQRLEEAKKLKELCHRY-GALFIVND-------R-VDIALAV-DADGVHLG 224 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHh-CCeEEEeC-------h-HHHHHHc-CCCEEEeC
Confidence 44567777899999999998843 3334333334444443322 24566652 2 5566678 99999996
Q ss_pred eecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
..+-+ ....+..++.++.+++.+ .+++++....+ .|.|=|.++|
T Consensus 225 q~dl~--~~~aR~llg~~~iIG~S~--------Hs~~e~~~A~~-----~GaDYI~lGP 268 (347)
T PRK02615 225 QEDLP--LAVARQLLGPEKIIGRST--------TNPEEMAKAIA-----EGADYIGVGP 268 (347)
T ss_pred hhhcC--HHHHHHhcCCCCEEEEec--------CCHHHHHHHHH-----cCCCEEEECC
Confidence 43321 222333355566655444 23555433332 3556677776
No 58
>PRK07695 transcriptional regulator TenI; Provisional
Probab=83.22 E-value=22 Score=34.79 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
+... +.++|+++||+-++-+. .++...+.+..... +....+++++.. .+....+ ++||+|+-..
T Consensus 19 ~~~~-~~~~g~~~iqlR~k~~~----~~~~~~~~~~l~~~--~~~~~~liin~~--------~~la~~~-~~~gvHl~~~ 82 (201)
T PRK07695 19 AVAM-QIHSEVDYIHIREREKS----AKELYEGVESLLKK--GVPASKLIINDR--------VDIALLL-NIHRVQLGYR 82 (201)
T ss_pred HHHH-HHhCCCCEEEEcCCCCC----HHHHHHHHHHHHHh--CCCCCeEEEECH--------HHHHHHc-CCCEEEeCcc
Confidence 4444 66899999999998544 33433333332222 111235777643 5566778 9999999753
Q ss_pred cCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
. .....+++.+| +..|++. .+ +.++ +.++.+ .|.+-+.++|
T Consensus 83 ~--~~~~~~r~~~~-~~~ig~s---~~-----s~e~----a~~a~~-~Gadyi~~g~ 123 (201)
T PRK07695 83 S--FSVRSVREKFP-YLHVGYS---VH-----SLEE----AIQAEK-NGADYVVYGH 123 (201)
T ss_pred c--CCHHHHHHhCC-CCEEEEe---CC-----CHHH----HHHHHH-cCCCEEEECC
Confidence 2 22344554454 4454443 22 3444 333433 5666666544
No 59
>PRK08999 hypothetical protein; Provisional
Probab=83.17 E-value=8.3 Score=40.40 Aligned_cols=108 Identities=21% Similarity=0.270 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
.+.++++.+.|+.+||+-++- .+.++...+.+.+..+.... +..++|+.+ .+....+ ++||+||--
T Consensus 147 ~~~~~~~l~~g~~~vqlR~k~----~~~~~~~~~~~~l~~~~~~~-~~~liind~--------~~la~~~-~~~GvHl~~ 212 (312)
T PRK08999 147 LARLERALAAGIRLIQLRAPQ----LPPAAYRALARAALGLCRRA-GAQLLLNGD--------PELAEDL-GADGVHLTS 212 (312)
T ss_pred HHHHHHHHHCCCcEEEEeCCC----CCHHHHHHHHHHHHHHHHHh-CCEEEEECc--------HHHHHhc-CCCEEEcCh
Confidence 345556668999999999984 44445555555555554322 356777633 5667778 999999985
Q ss_pred ecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 269 IRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 269 ~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
.+.+ ....+. ++.++.+++.+ .+.+++ .++.+ .|.|-+.++|
T Consensus 213 ~d~~--~~~~r~-~~~~~~ig~S~--------h~~~~~----~~a~~-~~~dyi~~gp 254 (312)
T PRK08999 213 AQLA--ALAARP-LPAGRWVAASC--------HDAEEL----ARAQR-LGVDFAVLSP 254 (312)
T ss_pred hhcC--hHhhcc-CCCCCEEEEec--------CCHHHH----HHHHh-cCCCEEEECC
Confidence 4321 111222 44455555444 334443 33322 4667788887
No 60
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=82.72 E-value=6.9 Score=37.76 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEE
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD 267 (595)
+.+..++|++.||+|-+ +.+++..+.+..+.+ .+++.|.++ |++. ++ ++.+.++ +||.|++=
T Consensus 93 ~~ea~~~g~d~I~lD~~------~~~~~~~~v~~l~~~---~~~v~ie~S---GGI~~~n-i~~ya~~-gvD~isvg 155 (169)
T PF01729_consen 93 AEEALEAGADIIMLDNM------SPEDLKEAVEELREL---NPRVKIEAS---GGITLEN-IAEYAKT-GVDVISVG 155 (169)
T ss_dssp HHHHHHTT-SEEEEES-------CHHHHHHHHHHHHHH---TTTSEEEEE---SSSSTTT-HHHHHHT-T-SEEEEC
T ss_pred HHHHHHhCCCEEEecCc------CHHHHHHHHHHHhhc---CCcEEEEEE---CCCCHHH-HHHHHhc-CCCEEEcC
Confidence 34445699999999965 334444333333333 234566666 7776 56 8888999 99998764
No 61
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=80.92 E-value=15 Score=35.48 Aligned_cols=109 Identities=11% Similarity=0.129 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHH-HHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEE
Q 007631 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKL-QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~-~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~l 266 (595)
+.+.+..+.+.|+++||+-++- .+..+. +.+.+....... . ..+++++. . .+....+ +.+|+||
T Consensus 15 ~~~~~~~~~~~g~~~v~lR~~~----~~~~~~~~~~~~l~~~~~~-~-~~~l~i~~-------~-~~la~~~-g~~GvHl 79 (196)
T TIGR00693 15 LLNRVEAALKGGVTLVQLRDKG----SNTRERLALAEKLQELCRR-Y-GVPFIVND-------R-VDLALAL-GADGVHL 79 (196)
T ss_pred HHHHHHHHHhcCCCEEEEecCC----CCHHHHHHHHHHHHHHHHH-h-CCeEEEEC-------H-HHHHHHc-CCCEEec
Confidence 4456677888999999999873 333333 333333332322 1 24677753 2 5667778 9999999
Q ss_pred EeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 267 DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 267 D~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
-... -....++..++.++.+++.+ + +.+++ .++.+ .|.+-+.++|
T Consensus 80 ~~~~--~~~~~~r~~~~~~~~ig~s~---h-----~~~e~----~~a~~-~g~dyi~~~~ 124 (196)
T TIGR00693 80 GQDD--LPASEARALLGPDKIIGVST---H-----NLEEL----AEAEA-EGADYIGFGP 124 (196)
T ss_pred Cccc--CCHHHHHHhcCCCCEEEEeC---C-----CHHHH----HHHhH-cCCCEEEECC
Confidence 6322 12333333344555555444 2 33443 23332 4667677765
No 62
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=80.75 E-value=6.5 Score=40.94 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHH-----HHHHcC-----CCCCcEEEEeccCCC-
Q 007631 179 SLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAY-----SELQSS-----LSGLNVLIETYFADV- 247 (595)
Q Consensus 179 ~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay-----~~l~~~-----~~~~~i~l~tyfg~~- 247 (595)
.|+..|.++..+-|..=..+|+..+||=|- |+..+++++.+.+.--| +.+.+. .+.+.+++ |...
T Consensus 186 ~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeS-wageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~---fakG~ 261 (359)
T KOG2872|consen 186 ALLQILTDAIVEYLVYQVVAGAQALQIFES-WAGELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMIL---FAKGS 261 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-hcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEE---EEcCc
Confidence 466777777777777778899999999884 77788877655433222 222221 11224443 3322
Q ss_pred CcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCC
Q 007631 248 PAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTS 327 (595)
Q Consensus 248 ~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsps 327 (595)
... ++.++++ ++|.++||++-.+. +.. +.+.+ .+-.=|=+|- ++--.+.+++-+++++..+..|+.+-+++=-
T Consensus 262 g~~-Le~l~~t-G~DVvgLDWTvdp~--ear-~~~g~-~VtlQGNlDP-~~ly~s~e~it~~v~~mv~~fG~~ryI~NLG 334 (359)
T KOG2872|consen 262 GGA-LEELAQT-GYDVVGLDWTVDPA--EAR-RRVGN-RVTLQGNLDP-GVLYGSKEEITQLVKQMVKDFGKSRYIANLG 334 (359)
T ss_pred chH-HHHHHhc-CCcEEeecccccHH--HHH-HhhCC-ceEEecCCCh-HHhcCCHHHHHHHHHHHHHHhCccceEEecC
Confidence 233 9999999 99999999975321 111 11222 2333354554 3445678899999999999999888777654
Q ss_pred CCCcccccccccccCCcHHHHhhhhhHHhHHHHH
Q 007631 328 CSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEV 361 (595)
Q Consensus 328 CgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El 361 (595)
-|.. |- .|++ ..+|..|++.++
T Consensus 335 HGi~--p~-------tp~e---~v~~f~E~~h~~ 356 (359)
T KOG2872|consen 335 HGIT--PG-------TPPE---HVAHFVEAVHKI 356 (359)
T ss_pred CCCC--CC-------CCHH---HHHHHHHHHHHh
Confidence 4442 33 2443 344666666554
No 63
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=78.65 E-value=36 Score=36.53 Aligned_cols=134 Identities=14% Similarity=0.086 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCCeEEee------ccccccCCC-hHHHHHHHHHHHHHHcCCCCCcEEE--EeccCCCCcccHHHHhcCC
Q 007631 189 KEVVAELKAAGATWIQFD------EPTLVLDLD-SHKLQAFSDAYSELQSSLSGLNVLI--ETYFADVPAETYKILTSLK 259 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiD------EP~L~~d~~-~~~~~~~~~ay~~l~~~~~~~~i~l--~tyfg~~~~~v~~~l~~l~ 259 (595)
.++++.|.++|++.|++= -..+....+ ..+.+.++.+-..+ ++.++.. .-.++...+ ++...+.
T Consensus 28 ~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~----~~~~~~~ll~pg~~~~~d--l~~a~~~- 100 (337)
T PRK08195 28 RAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV----KQAKIAALLLPGIGTVDD--LKMAYDA- 100 (337)
T ss_pred HHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC----CCCEEEEEeccCcccHHH--HHHHHHc-
Confidence 456777889999999992 111211111 01233333332222 2233332 112344433 5666777
Q ss_pred CccEEEEEeecCCCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCccccc
Q 007631 260 GVTGFGFDLIRGTKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (595)
Q Consensus 260 pvd~i~lD~~~~~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~ 335 (595)
+++.+.+=+--. +.+.+.+. . ..+..+.+.+.++ .+.+++.+++.++.+.+ .|++.+++.-+.|.+ +|.
T Consensus 101 gvd~iri~~~~~--e~~~~~~~i~~ak~~G~~v~~~l~~a---~~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~-~P~ 173 (337)
T PRK08195 101 GVRVVRVATHCT--EADVSEQHIGLARELGMDTVGFLMMS---HMAPPEKLAEQAKLMES-YGAQCVYVVDSAGAL-LPE 173 (337)
T ss_pred CCCEEEEEEecc--hHHHHHHHHHHHHHCCCeEEEEEEec---cCCCHHHHHHHHHHHHh-CCCCEEEeCCCCCCC-CHH
Confidence 899877654222 11222211 1 2366888889877 46789999999998866 688999999999976 354
Q ss_pred c
Q 007631 336 D 336 (595)
Q Consensus 336 ~ 336 (595)
+
T Consensus 174 ~ 174 (337)
T PRK08195 174 D 174 (337)
T ss_pred H
Confidence 3
No 64
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=78.19 E-value=9.3 Score=37.36 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHH-HHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEE
Q 007631 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHK-LQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~-~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~l 266 (595)
+.+.++.+.++|+++||+|.+- .+..+ .+.+.+ +..+.... +.+++++. . ++.+.+. ++|++|+
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~----~~~~~~~~~~~~-~~~~~~~~-~~~l~~~~-------~-~~~a~~~-gad~vh~ 87 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKG----LDTRERLELARA-LKELCRRY-GVPLIVND-------R-VDLALAV-GADGVHL 87 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCC----CCHHHHHHHHHH-HHHHHHHh-CCeEEEeC-------h-HHHHHHc-CCCEEec
Confidence 4567788889999999999884 33222 233322 33332211 24566642 2 6777888 9999999
Q ss_pred Eee
Q 007631 267 DLI 269 (595)
Q Consensus 267 D~~ 269 (595)
...
T Consensus 88 ~~~ 90 (212)
T PRK00043 88 GQD 90 (212)
T ss_pred Ccc
Confidence 653
No 65
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=77.64 E-value=16 Score=41.31 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEE
Q 007631 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD 267 (595)
+.+.++.+.+.|+.+|||-++.+ +.+++....+.+..+.... +..++|+.+ .+....+ +.||+||-
T Consensus 309 ~~~~l~~~l~~Gv~~vqlR~k~~----~~~~~~~~a~~l~~~~~~~-~~~liind~--------~~lA~~~-~adGvHl~ 374 (502)
T PLN02898 309 TVDAVRAAIEGGATIVQLREKEA----ETREFIEEAKACLAICRSY-GVPLLINDR--------VDVALAC-DADGVHLG 374 (502)
T ss_pred HHHHHHHHHHcCCCEEEEccCCC----CHHHHHHHHHHHHHHHHHh-CCEEEEcCh--------HHHHHhc-CCCEEEeC
Confidence 34567888899999999998844 3333322222222232221 356777533 5566678 89999996
Q ss_pred eecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
-.+- .....+..++.++.|++.+ .+.+++ .++.+ .|.|-+.++|
T Consensus 375 ~~d~--~~~~~r~~~~~~~~iG~S~--------h~~~e~----~~a~~-~gadyi~~gp 418 (502)
T PLN02898 375 QSDM--PVRLARSLLGPGKIIGVSC--------KTPEQA----EQAWK-DGADYIGCGG 418 (502)
T ss_pred hHhc--CHHHHHHhcCCCCEEEEeC--------CCHHHH----HHHhh-cCCCEEEECC
Confidence 4321 1233343355566655443 234443 33322 4667777665
No 66
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=76.82 E-value=22 Score=37.39 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCC--------CCcccH
Q 007631 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFAD--------VPAETY 252 (595)
Q Consensus 181 l~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~--------~~~~v~ 252 (595)
+++|..+|++.++.|.+-|++.+-|. .+.-++...+-+.+.+++++.... ++.++++.-+.+ --+.++
T Consensus 138 fd~l~~ay~eq~~~Li~gG~D~iLiE-T~~D~l~~KaA~~a~~~~~~~~~~---~LPv~~s~Ti~~sG~tl~Gq~~~a~~ 213 (311)
T COG0646 138 FDELVEAYREQVEGLIDGGADLILIE-TIFDTLNAKAAVFAAREVFEELGV---RLPVMISGTITDSGRTLSGQTIEAFL 213 (311)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEe-hhccHHHHHHHHHHHHHHHHhcCC---cccEEEEEEEecCceecCCCcHHHHH
Confidence 57999999999999999999987665 222221112233444455444322 355666533321 112236
Q ss_pred HHHhcCCCccEEEEEeecCCCChhhHhhhC--CCCcEEE----EeEeeCCCC---CCCCHHHHHHHHHHHHhhcCCCcEE
Q 007631 253 KILTSLKGVTGFGFDLIRGTKTLDLIKTEF--PLGKYLF----AGVVDGRNI---WANDLASSLTTLQDLAGTVGKDKVV 323 (595)
Q Consensus 253 ~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~--p~~k~l~----lGVVdgrn~---w~ed~~~~~~~i~~~~~~~~~~rl~ 323 (595)
..|..+ +++.++|.+..+++.+.+....+ ..+..|+ +|+=|-.+- ..++++.....+....+.-+. | +
T Consensus 214 ~~l~~~-~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~v-n-I 290 (311)
T COG0646 214 NSLEHL-GPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGV-N-I 290 (311)
T ss_pred HHhhcc-CCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCCc-e-e
Confidence 677889 99999999988875555543322 2455555 366555555 899999999988887764321 2 3
Q ss_pred EeCCCCC
Q 007631 324 VSTSCSL 330 (595)
Q Consensus 324 vspsCgL 330 (595)
|.-=||=
T Consensus 291 vGGCCGT 297 (311)
T COG0646 291 VGGCCGT 297 (311)
T ss_pred eccccCC
Confidence 4566664
No 67
>PRK06256 biotin synthase; Validated
Probab=75.75 E-value=93 Score=32.93 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
++++.+.+.|+..+.|--- .......+.+.+.++++.+... .++.+++..|...+..+..|.+. +++.+++.+.
T Consensus 98 ~~~~~~~~~g~~~~~l~~~--g~~p~~~~~~~~~e~i~~i~~~---~~i~~~~~~g~l~~e~l~~Lkea-G~~~v~~~lE 171 (336)
T PRK06256 98 EAAKEAIEEGAGTFCIVAS--GRGPSGKEVDQVVEAVKAIKEE---TDLEICACLGLLTEEQAERLKEA-GVDRYNHNLE 171 (336)
T ss_pred HHHHHHHHCCCCEEEEEec--CCCCCchHHHHHHHHHHHHHhc---CCCcEEecCCcCCHHHHHHHHHh-CCCEEecCCc
Confidence 3445566779875554210 1112223455666777767543 24455556676664448888899 9999887543
Q ss_pred c---------CCCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCccccc
Q 007631 270 R---------GTKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (595)
Q Consensus 270 ~---------~~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~ 335 (595)
. ...+++...+. + ..+-.+..|+|=|- -|+.+++.+.+..+. .++++.+.+++-.+.-..|.
T Consensus 172 ts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl---gEt~ed~~~~~~~l~-~l~~~~v~i~~l~P~pGT~l 246 (336)
T PRK06256 172 TSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM---GESLEDRVEHAFFLK-ELDADSIPINFLNPIPGTPL 246 (336)
T ss_pred cCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC---CCCHHHHHHHHHHHH-hCCCCEEeecccccCCCCCC
Confidence 2 11233222110 1 12345677777665 377788777777665 46667777776444444443
No 68
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=74.26 E-value=18 Score=40.09 Aligned_cols=108 Identities=11% Similarity=0.085 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
+.++++.++|+++||+=|.-+ +.++...+.+....+.+.. +..+++..+ ++....+ +.+|+||--.
T Consensus 221 ~~ve~aL~aGv~~VQLReK~l----s~~el~~la~~l~~l~~~~-gv~LiIND~--------~dlAl~~-gAdGVHLGQe 286 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKDP----QQADLEQQIIRAIALGREY-NAQVFINDY--------WQLAIKH-QAYGVHLGQE 286 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHh-CCEEEEECH--------HHHHHHc-CCCEEEcChH
Confidence 458888899999999998844 4444433333334443322 256777643 6666778 9999999854
Q ss_pred cCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
+-+ ...++..++.++. +|+ +. -+++++ .++. ..|++=|.++|
T Consensus 287 DL~--~~~aR~ilg~~~i--IGv-St-----Hs~eEl----~~A~-~~gaDYI~lGP 328 (437)
T PRK12290 287 DLE--EANLAQLTDAGIR--LGL-ST-----HGYYEL----LRIV-QIQPSYIALGH 328 (437)
T ss_pred Hcc--hhhhhhhcCCCCE--EEE-ec-----CCHHHH----HHHh-hcCCCEEEECC
Confidence 421 1223322344544 455 22 344443 3332 25667777776
No 69
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=73.77 E-value=25 Score=35.27 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
.+.+.+..+.|++.||+=|.-.. ..+.....+....+.... +..++|. +. ++..... +.||+||--
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~----~~~~~~~a~~~~~lc~~~-~v~liIN-------d~-~dlA~~~-~AdGVHlGq 89 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLS----DEEYLALAEKLRALCQKY-GVPLIIN-------DR-VDLALAV-GADGVHLGQ 89 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCC----hHHHHHHHHHHHHHHHHh-CCeEEec-------Cc-HHHHHhC-CCCEEEcCC
Confidence 34556666899999999987333 333222222223333322 2456664 22 6666778 999999986
Q ss_pred ecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 269 IRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 269 ~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
.+- .....++-+++++.|++++ .|++++++..+. |+|=+.++|
T Consensus 90 ~D~--~~~~ar~~~~~~~iIG~S~--------h~~eea~~A~~~-----g~DYv~~Gp 132 (211)
T COG0352 90 DDM--PLAEARELLGPGLIIGLST--------HDLEEALEAEEL-----GADYVGLGP 132 (211)
T ss_pred ccc--chHHHHHhcCCCCEEEeec--------CCHHHHHHHHhc-----CCCEEEECC
Confidence 532 2333333466666666655 266665443333 344455544
No 70
>PLN02334 ribulose-phosphate 3-epimerase
Probab=73.31 E-value=60 Score=32.54 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHH-HHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEE--
Q 007631 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKL-QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGF-- 264 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~-~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i-- 264 (595)
+.+.++++.++|++|||+|+--.... +.... ..+.+.+..+.+ .+ +.+|+-+ -+..+. ++.+... ++|++
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~-~~~~~g~~~~~~l~~~~~-~~-~~vhlmv--~~p~d~-~~~~~~~-gad~v~v 94 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFV-PNLTIGPPVVKALRKHTD-AP-LDCHLMV--TNPEDY-VPDFAKA-GASIFTF 94 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcC-CccccCHHHHHHHHhcCC-Cc-EEEEecc--CCHHHH-HHHHHHc-CCCEEEE
Confidence 56788899999999999997533211 11011 012222222311 11 2344332 223333 6667788 89999
Q ss_pred EEE
Q 007631 265 GFD 267 (595)
Q Consensus 265 ~lD 267 (595)
|++
T Consensus 95 H~~ 97 (229)
T PLN02334 95 HIE 97 (229)
T ss_pred eec
Confidence 888
No 71
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.15 E-value=15 Score=38.29 Aligned_cols=65 Identities=9% Similarity=0.137 Sum_probs=41.4
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEee
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~ 269 (595)
+..+..++|++.||+|.+ + .+.++++...+....+++.+..+ |++. ++ +..+..+ +||.|.+=..
T Consensus 194 ea~~A~~~GaDiI~LDn~------~---~e~l~~~v~~~~~~~~~~~ieAs---GgIt~~n-i~~ya~~-GvD~IsvG~l 259 (273)
T PRK05848 194 EAKNAMNAGADIVMCDNM------S---VEEIKEVVAYRNANYPHVLLEAS---GNITLEN-INAYAKS-GVDAISSGSL 259 (273)
T ss_pred HHHHHHHcCCCEEEECCC------C---HHHHHHHHHHhhccCCCeEEEEE---CCCCHHH-HHHHHHc-CCCEEEeChh
Confidence 345556899999999986 2 33444554444322233344444 7776 56 8888899 9998876543
No 72
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=70.02 E-value=77 Score=33.94 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCCeEEee------ccccccCCC-hHHHHHHHHHHHHHHcCCCCCcEEEEec--cCCCCcccHHHHhcCC
Q 007631 189 KEVVAELKAAGATWIQFD------EPTLVLDLD-SHKLQAFSDAYSELQSSLSGLNVLIETY--FADVPAETYKILTSLK 259 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiD------EP~L~~d~~-~~~~~~~~~ay~~l~~~~~~~~i~l~ty--fg~~~~~v~~~l~~l~ 259 (595)
.++++.|.++|+++|.+= .-.+....+ ..+.+.++.+...+. +.++.+..- .+...+ ++...+.
T Consensus 27 ~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~----~~~~~~ll~pg~~~~~d--l~~a~~~- 99 (333)
T TIGR03217 27 RAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK----RAKVAVLLLPGIGTVHD--LKAAYDA- 99 (333)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC----CCEEEEEeccCccCHHH--HHHHHHC-
Confidence 456778889999999993 112221111 113344444433332 233332211 233323 5666777
Q ss_pred CccEEEEEeecCCCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCccccc
Q 007631 260 GVTGFGFDLIRGTKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (595)
Q Consensus 260 pvd~i~lD~~~~~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~ 335 (595)
+++.+.+=+--. +.+.+.+. . ..+..+...+.++ .+.+++.+++.++.+.+ .|++.++|.-+.|.+ +|.
T Consensus 100 gvd~iri~~~~~--e~d~~~~~i~~ak~~G~~v~~~l~~s---~~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~-~P~ 172 (333)
T TIGR03217 100 GARTVRVATHCT--EADVSEQHIGMARELGMDTVGFLMMS---HMTPPEKLAEQAKLMES-YGADCVYIVDSAGAM-LPD 172 (333)
T ss_pred CCCEEEEEeccc--hHHHHHHHHHHHHHcCCeEEEEEEcc---cCCCHHHHHHHHHHHHh-cCCCEEEEccCCCCC-CHH
Confidence 888887654221 11222211 1 1356788888876 47789999999998865 688999999999986 355
Q ss_pred c
Q 007631 336 D 336 (595)
Q Consensus 336 ~ 336 (595)
+
T Consensus 173 ~ 173 (333)
T TIGR03217 173 D 173 (333)
T ss_pred H
Confidence 4
No 73
>COG3462 Predicted membrane protein [Function unknown]
Probab=68.39 E-value=5.9 Score=35.17 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 007631 15 RELKFALESFWDGKSSADELQNVAADLR 42 (595)
Q Consensus 15 reLK~A~e~yw~g~i~~~eL~~~~~~~~ 42 (595)
|..-=+.|+|-+|+||+||+++..++++
T Consensus 89 RA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 89 RAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 6777789999999999999999988875
No 74
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=66.40 E-value=1.4e+02 Score=30.64 Aligned_cols=147 Identities=13% Similarity=0.053 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHH-HcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccC--CCCcccHHHHhcC
Q 007631 182 DKIIPVYKEVVAELK-AAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA--DVPAETYKILTSL 258 (595)
Q Consensus 182 ~~L~~aY~~~l~~L~-~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg--~~~~~v~~~l~~l 258 (595)
+++...+.+.+.... .-+++..-|=|-.+-....+...+.|....+ ++... +..+++|+--+ ...+. ++.|.+.
T Consensus 97 ~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~-lA~~~-~~Pv~iH~~~~~~~~~~~-l~~l~~~ 173 (293)
T cd00530 97 EELTDMLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAAR-AQKET-GVPISTHTQAGLTMGLEQ-LRILEEE 173 (293)
T ss_pred HHHHHHHHHHHHhccccCCcCceEEEEeecCCCCCHHHHHHHHHHHH-HHHHH-CCeEEEcCCCCccccHHH-HHHHHHc
Confidence 345555555444322 2233332332222222233445555555543 32222 24577776533 22333 6666554
Q ss_pred CCccE--EEEEeecCCCChhhHhhhCCCCcEEEEeEeeCC-CCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcc
Q 007631 259 KGVTG--FGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGR-NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (595)
Q Consensus 259 ~pvd~--i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgr-n~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h 332 (595)
++.. +.+.-....++++.+...+..+-.++++.+... ..+..+.+...+.++++.+..+.++|.++||++...
T Consensus 174 -g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~ 249 (293)
T cd00530 174 -GVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKS 249 (293)
T ss_pred -CCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchh
Confidence 4421 222211112244444432223445555532211 111233456677888888888889999999998863
No 75
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=63.77 E-value=1.7e+02 Score=29.62 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccccCCChHHHH--------------HHHHHHHHHHcCCCCCcEEEEeccCC-----C
Q 007631 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQ--------------AFSDAYSELQSSLSGLNVLIETYFAD-----V 247 (595)
Q Consensus 187 aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~--------------~~~~ay~~l~~~~~~~~i~l~tyfg~-----~ 247 (595)
...+.++.|.++||++|+||=|.--.-.+...++ ..-+....+.+.. +..+++-+|+.. +
T Consensus 15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~ 93 (242)
T cd04724 15 TTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYGL 93 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhCH
Confidence 4467788899999999999965421111222222 2222333333222 346888888764 2
Q ss_pred CcccHHHHhcCCCccEEEE
Q 007631 248 PAETYKILTSLKGVTGFGF 266 (595)
Q Consensus 248 ~~~v~~~l~~l~pvd~i~l 266 (595)
.. .++.+.+. +++++-+
T Consensus 94 ~~-fi~~~~~a-G~~giii 110 (242)
T cd04724 94 ER-FLRDAKEA-GVDGLII 110 (242)
T ss_pred HH-HHHHHHHC-CCcEEEE
Confidence 23 37778888 9998888
No 76
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=63.00 E-value=84 Score=37.54 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
.+.++++.++|+++||+-|+- ++.++...+.+....+.... +..++|... .+....+ +.| +||--
T Consensus 22 ~~~l~~~l~~g~~~iqlR~K~----~~~~~~~~~a~~l~~l~~~~-~~~liind~--------~~la~~~-~~d-VHlg~ 86 (755)
T PRK09517 22 AGIVDSAISGGVSVVQLRDKN----AGVEDVRAAAKELKELCDAR-GVALVVNDR--------LDVAVEL-GLH-VHIGQ 86 (755)
T ss_pred HHHHHHHHhcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHh-CCeEEEeCh--------HHHHHHc-CCC-eecCC
Confidence 345666678899999999884 44445544444444443322 356777632 5566677 888 88764
Q ss_pred ecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhc---CCCcEEEeC
Q 007631 269 IRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV---GKDKVVVST 326 (595)
Q Consensus 269 ~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~---~~~rl~vsp 326 (595)
.+- .....+..++.++.|++.+ .+.+++......+. .+ |.|=+.++|
T Consensus 87 ~dl--~~~~~r~~~~~~~~iG~S~--------h~~~e~~~~~~~~~-~~g~~gaDYi~~Gp 136 (755)
T PRK09517 87 GDT--PYTQARRLLPAHLELGLTI--------ETLDQLEAVIAQCA-ETGVALPDVIGIGP 136 (755)
T ss_pred CcC--CHHHHHHhcCCCCEEEEeC--------CCHHHHHHHHhhhc-cCCCCCCCEEEECC
Confidence 321 2344444355555554432 34454432222221 12 366777776
No 77
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.52 E-value=27 Score=36.69 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=37.8
Q ss_pred HHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEe
Q 007631 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 193 ~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~ 268 (595)
.+..++|+++||+| .++.++ ++++...+....+++.+..+ |++. ++ ++.+..+ +||+|.+=.
T Consensus 210 ~eA~~~GaD~I~LD------n~~~e~---l~~av~~~~~~~~~i~leAs---GGIt~~n-i~~ya~t-GvD~Isvgs 272 (288)
T PRK07428 210 QEALEYGADIIMLD------NMPVDL---MQQAVQLIRQQNPRVKIEAS---GNITLET-IRAVAET-GVDYISSSA 272 (288)
T ss_pred HHHHHcCCCEEEEC------CCCHHH---HHHHHHHHHhcCCCeEEEEE---CCCCHHH-HHHHHHc-CCCEEEEch
Confidence 44558899999999 333333 33443334321222333333 7776 56 8888888 999887654
No 78
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=60.91 E-value=53 Score=32.93 Aligned_cols=127 Identities=14% Similarity=0.246 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC--cccHHHHhcCCCccEEEE
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP--AETYKILTSLKGVTGFGF 266 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~--~~v~~~l~~l~pvd~i~l 266 (595)
.+.++.+.+.|++|||+=+-.....-.....+.+.+..+.. ...+.+. |+++ +. ++.+.++ +++++++
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~-----~~~l~v~---GGi~~~~~-~~~~~~~-Ga~~v~i 104 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAV-----GVPVQLG---GGIRSAED-AASLLDL-GVDRVIL 104 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHc-----CCcEEEc---CCcCCHHH-HHHHHHc-CCCEEEE
Confidence 34555566889999998765433221122333444332221 2456664 4554 23 5567788 9999988
Q ss_pred Eeec--CCCChhhHhhhCCCCcE-EEEeEeeCC---CCCCCCHH-HHHHHHHHHHhhcCCCcEEEeC
Q 007631 267 DLIR--GTKTLDLIKTEFPLGKY-LFAGVVDGR---NIWANDLA-SSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 267 D~~~--~~~~l~~l~~~~p~~k~-l~lGVVdgr---n~w~ed~~-~~~~~i~~~~~~~~~~rl~vsp 326 (595)
.-.. .+..+..+.+.++.++. +++-+.+++ .-|.++.. ...+.++.+ ...|.+.+.+.+
T Consensus 105 Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~-~~~G~~~i~~~~ 170 (241)
T PRK13585 105 GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRF-EELGAGSILFTN 170 (241)
T ss_pred ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHH-HHcCCCEEEEEe
Confidence 7543 22234444444665543 333322211 23433222 233344444 335667776543
No 79
>PRK12928 lipoyl synthase; Provisional
Probab=60.45 E-value=2.2e+02 Score=29.81 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=82.4
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEe-ccCC-CCcccHHHHhcCCCccEEEE-
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIET-YFAD-VPAETYKILTSLKGVTGFGF- 266 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~t-yfg~-~~~~v~~~l~~l~pvd~i~l- 266 (595)
++++++.+.|++.|-|---. ..|+++...+.+.+..+.|....+...|.+.+ .|.. ..+. +..+.+. +.+.+..
T Consensus 94 ~~a~~~~~~G~keivitg~~-~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~-L~~l~~A-g~~i~~hn 170 (290)
T PRK12928 94 RVAEAVAALGLRYVVLTSVA-RDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRER-LATVLAA-KPDVFNHN 170 (290)
T ss_pred HHHHHHHHCCCCEEEEEEEe-CCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHH-HHHHHHc-Cchhhccc
Confidence 44556777899987773211 11332222344555555555433334444433 2221 3343 5556555 4444443
Q ss_pred -Eee-------cCCCChhh----Hhh--hCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCC--CC
Q 007631 267 -DLI-------RGTKTLDL----IKT--EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSC--SL 330 (595)
Q Consensus 267 -D~~-------~~~~~l~~----l~~--~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsC--gL 330 (595)
+-+ +...+.+. +.. ...++-.+..|+|=|. -|+.+++.+.++.+.+ ++.+.+-|.+=+ |.
T Consensus 171 lEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~---GET~ed~~etl~~Lre-l~~d~v~i~~Yl~p~~ 246 (290)
T PRK12928 171 LETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL---GETEDEVIETLRDLRA-VGCDRLTIGQYLRPSL 246 (290)
T ss_pred CcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC---CCCHHHHHHHHHHHHh-cCCCEEEEEcCCCCCc
Confidence 211 11122222 221 1223456777787774 5899999999998866 677888887643 47
Q ss_pred cccccccccccCCcHHHHhhhhhHH
Q 007631 331 LHTAVDLENETKLDQEIKSWLAFAA 355 (595)
Q Consensus 331 ~h~P~~~~~E~~l~~~~~~~laFA~ 355 (595)
.|+|+. +.--|++...|-.+|.
T Consensus 247 ~~~~v~---~~~~~~~f~~~~~~~~ 268 (290)
T PRK12928 247 AHLPVQ---RYWTPEEFEALGQIAR 268 (290)
T ss_pred cCCcee---eccCHHHHHHHHHHHH
Confidence 999987 3223444444444443
No 80
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=59.36 E-value=19 Score=24.71 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHH
Q 007631 444 MDLRRVRREFKAKKISEDDYVKTIK 468 (595)
Q Consensus 444 ~~l~~ar~~~~~g~i~~~e~~~~~~ 468 (595)
..|..+...+.+|.||.+||.+.-.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4577888899999999999987654
No 81
>PRK08508 biotin synthase; Provisional
Probab=58.30 E-value=2.3e+02 Score=29.32 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=78.6
Q ss_pred HHHHHcCCCeEEe--eccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeec
Q 007631 193 AELKAAGATWIQF--DEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 193 ~~L~~aG~~~IQi--DEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
++..+.|+.-+-+ ..+. .++.+.+.+.+.++.+.+.. +++.++.+.|...+..+..|.+. ++|.+++++..
T Consensus 50 ~~a~~~g~~~~~lv~sg~~----~~~~~~e~~~ei~~~ik~~~--p~l~i~~s~G~~~~e~l~~Lk~a-Gld~~~~~lEt 122 (279)
T PRK08508 50 KMAKANGALGFCLVTSGRG----LDDKKLEYVAEAAKAVKKEV--PGLHLIACNGTASVEQLKELKKA-GIFSYNHNLET 122 (279)
T ss_pred HHHHHCCCCEEEEEeccCC----CCcccHHHHHHHHHHHHhhC--CCcEEEecCCCCCHHHHHHHHHc-CCCEEcccccc
Confidence 3344568865433 2221 12335677777777776532 35667667787664448889898 99999987643
Q ss_pred C---------CCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCccccc
Q 007631 271 G---------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (595)
Q Consensus 271 ~---------~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~ 335 (595)
+ ..+++...+. . ..+-.+..|+|=|- -|+.+++++.+..+.+ ++++-+-++...+.-.+|.
T Consensus 123 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl---GEt~ed~~~~l~~lr~-L~~~svpl~~~~p~~~t~~ 196 (279)
T PRK08508 123 SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL---GESWEDRISFLKSLAS-LSPHSTPINFFIPNPALPL 196 (279)
T ss_pred hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec---CCCHHHHHHHHHHHHc-CCCCEEeeCCcCCCCCCCC
Confidence 2 1233331110 0 12345556666663 4778888888888754 6666677777555555554
No 82
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=57.69 E-value=2.3e+02 Score=29.16 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=77.4
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
.++++.|.++|++.|++=-|... +.+.+..+.. ..+ . ....+... .-.+..+ ++...+. .++.+++=+
T Consensus 25 ~~i~~~L~~~Gv~~IEvG~P~~~----~~~~~~~~~l-~~~--~-~~~~v~~~-~r~~~~d--i~~a~~~-g~~~i~i~~ 92 (262)
T cd07948 25 IEIAKALDAFGVDYIELTSPAAS----PQSRADCEAI-AKL--G-LKAKILTH-IRCHMDD--ARIAVET-GVDGVDLVF 92 (262)
T ss_pred HHHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHH-HhC--C-CCCcEEEE-ecCCHHH--HHHHHHc-CcCEEEEEE
Confidence 45677889999999999877544 2233333222 112 1 11233211 1122222 5667778 899999876
Q ss_pred ecC------------CCChhhHhhh--C--CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 269 IRG------------TKTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 269 ~~~------------~~~l~~l~~~--~--p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
.-+ .+.++.+.+. . ..+..+.+++.| ..+.+++.+.+.++.+.+ .|++++++.-.-|.+
T Consensus 93 ~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed---a~r~~~~~l~~~~~~~~~-~g~~~i~l~Dt~G~~ 167 (262)
T cd07948 93 GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED---SFRSDLVDLLRVYRAVDK-LGVNRVGIADTVGIA 167 (262)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe---eCCCCHHHHHHHHHHHHH-cCCCEEEECCcCCCC
Confidence 421 1223333221 1 235689999986 466778888888888865 588999999988865
No 83
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=57.53 E-value=1.5e+02 Score=30.40 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCCeEEeecc------ccccCCC-hHHHHHHHHHHHHHHcCCCCCcEEEE--eccCCCCcccHHHHhcCC
Q 007631 189 KEVVAELKAAGATWIQFDEP------TLVLDLD-SHKLQAFSDAYSELQSSLSGLNVLIE--TYFADVPAETYKILTSLK 259 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP------~L~~d~~-~~~~~~~~~ay~~l~~~~~~~~i~l~--tyfg~~~~~v~~~l~~l~ 259 (595)
.++++.|.++|+++|.+==| ......+ ....+.++..-... ++.++.+- ...+...+ ++...+.
T Consensus 25 ~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~----~~~~~~~~~~~~~~~~~~--i~~a~~~- 97 (263)
T cd07943 25 RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL----KQAKLGVLLLPGIGTVDD--LKMAADL- 97 (263)
T ss_pred HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc----cCCEEEEEecCCccCHHH--HHHHHHc-
Confidence 45567788999999998511 1111111 11223333222211 22343221 11333333 5666777
Q ss_pred CccEEEEEeecCC-CChhhHhhh-CCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccc
Q 007631 260 GVTGFGFDLIRGT-KTLDLIKTE-FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (595)
Q Consensus 260 pvd~i~lD~~~~~-~~l~~l~~~-~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~ 336 (595)
+++.+.+-+.-+. .++....+. -..+..+.+.+.++ .+.+++.+++.++.+.+ .|++.+++.-+.|.+ .|.+
T Consensus 98 g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~---~~~~~~~~~~~~~~~~~-~G~d~i~l~DT~G~~-~P~~ 171 (263)
T cd07943 98 GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMS---HMASPEELAEQAKLMES-YGADCVYVTDSAGAM-LPDD 171 (263)
T ss_pred CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEec---cCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCc-CHHH
Confidence 8998888543321 122222111 12466788888776 45688999999998865 688999999999976 3544
No 84
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=57.46 E-value=24 Score=24.15 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 007631 15 RELKFALESFWDGKSSADELQNVAADL 41 (595)
Q Consensus 15 reLK~A~e~yw~g~i~~~eL~~~~~~~ 41 (595)
.+|+..-+.|-+|.||++|+.+.-+++
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 578888899999999999999876665
No 85
>PRK10812 putative DNAse; Provisional
Probab=56.61 E-value=2.4e+02 Score=29.01 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCcc---EEEEEeecCCCChhhHhhhCCCCcEEEEeEee
Q 007631 218 KLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT---GFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVD 294 (595)
Q Consensus 218 ~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd---~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVd 294 (595)
..+.|+...+ ++... +..|.+|+- +...+. ++.|.+. ++. ++.-=| .++.+.+...+..+-.+++|-+-
T Consensus 109 Q~~vf~~ql~-lA~e~-~~Pv~iH~r-~a~~~~-l~iL~~~-~~~~~~~v~H~f---sG~~~~a~~~~~~G~~is~~g~~ 180 (265)
T PRK10812 109 QQESFRHHIQ-IGREL-NKPVIVHTR-DARADT-LAILREE-KVTDCGGVLHCF---TEDRETAGKLLDLGFYISFSGIV 180 (265)
T ss_pred HHHHHHHHHH-HHHHh-CCCeEEEee-CchHHH-HHHHHhh-cCCCCCEEEEee---cCCHHHHHHHHHCCCEEEECeee
Confidence 3445555443 33322 245777764 333344 7777654 332 331112 23444444322235567765321
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchH
Q 007631 295 GRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDE 374 (595)
Q Consensus 295 grn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~ 374 (595)
+ +. -.+.++++.+.+|.|||.+.|||+.+. |.......+-| ..+....+++.|+.- +..+...
T Consensus 181 t---~~-----~~~~~~~~~~~ipldrlLlETD~P~~~-p~~~~g~~n~P----~~i~~v~~~ia~l~g----~~~eei~ 243 (265)
T PRK10812 181 T---FR-----NAEQLRDAARYVPLDRLLVETDSPYLA-PVPHRGKENQP----AMVRDVAEYMAVLKG----VSVEELA 243 (265)
T ss_pred e---cC-----ccHHHHHHHHhCChhhEEEecCCCCCC-CcCCCCCCCCc----HHHHHHHHHHHHHhC----CCHHHHH
Confidence 1 11 124567777788889999999999862 33222222223 234456667776622 2112334
Q ss_pred HHHHHHHHHHH
Q 007631 375 AYFSSNAAAQA 385 (595)
Q Consensus 375 ~~~~~~~~~~~ 385 (595)
..+..|...+-
T Consensus 244 ~~~~~N~~~lf 254 (265)
T PRK10812 244 QVTTDNFARLF 254 (265)
T ss_pred HHHHHHHHHHH
Confidence 45556655443
No 86
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.14 E-value=49 Score=34.77 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=40.0
Q ss_pred HHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEeec
Q 007631 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 193 ~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
.+..++|++.||+| +++.+++ +++...+....+++.+..+ |+++ ++ +..+..+ +||.|..=...
T Consensus 213 ~eal~~gaDiI~LD------nm~~e~v---k~av~~~~~~~~~v~ieaS---GGI~~~n-i~~yA~t-GvD~Is~galt 277 (289)
T PRK07896 213 DEVLAEGAELVLLD------NFPVWQT---QEAVQRRDARAPTVLLESS---GGLTLDT-AAAYAET-GVDYLAVGALT 277 (289)
T ss_pred HHHHHcCCCEEEeC------CCCHHHH---HHHHHHHhccCCCEEEEEE---CCCCHHH-HHHHHhc-CCCEEEeChhh
Confidence 44458899999999 4544443 3444333222223333333 7787 66 8888999 99998876543
No 87
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=53.15 E-value=45 Score=34.86 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEe
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~ 268 (595)
..++..++|++.||+| .++.+++ .++...+.+..++..+.++ |++. ++ +..+..+ +||.|..=.
T Consensus 200 ea~ea~~~GaDiI~lD------n~~~e~l---~~~v~~l~~~~~~~~leas---GGI~~~n-i~~ya~~-GvD~is~ga 264 (277)
T TIGR01334 200 QALTVLQASPDILQLD------KFTPQQL---HHLHERLKFFDHIPTLAAA---GGINPEN-IADYIEA-GIDLFITSA 264 (277)
T ss_pred HHHHHHHcCcCEEEEC------CCCHHHH---HHHHHHHhccCCCEEEEEE---CCCCHHH-HHHHHhc-CCCEEEeCc
Confidence 3455678999999999 4444444 3333334322222333333 8887 56 8888899 999886543
No 88
>COG3462 Predicted membrane protein [Function unknown]
Probab=53.02 E-value=19 Score=32.14 Aligned_cols=23 Identities=17% Similarity=0.533 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Q 007631 447 RRVRREFKAKKISEDDYVKTIKE 469 (595)
Q Consensus 447 ~~ar~~~~~g~i~~~e~~~~~~~ 469 (595)
.-++.+|.+|+||+|||++.+++
T Consensus 92 eIlkER~AkGEItEEEY~r~~~~ 114 (117)
T COG3462 92 EILKERYAKGEITEEEYRRIIRT 114 (117)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 34678899999999999988764
No 89
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.61 E-value=3.2e+02 Score=29.48 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEe
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~ 268 (595)
++++.|.++|++.|.+==|... +.+.+.++..- +..++.+ ++++ +... +. ++...+. .++.+++=+
T Consensus 27 ~ia~~L~~~Gv~~IEvG~p~~~----~~~~e~i~~i~----~~~~~~~--i~~~-~r~~~~d-i~~a~~~-g~~~i~i~~ 93 (365)
T TIGR02660 27 AIARALDEAGVDELEVGIPAMG----EEERAVIRAIV----ALGLPAR--LMAW-CRARDAD-IEAAARC-GVDAVHISI 93 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----HHHHHHHHHHH----HcCCCcE--EEEE-cCCCHHH-HHHHHcC-CcCEEEEEE
Confidence 4567788999999999766533 34455544442 2112223 3332 3222 23 6677788 899888876
Q ss_pred ecCC------------CChhhHhhh----CCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcc
Q 007631 269 IRGT------------KTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (595)
Q Consensus 269 ~~~~------------~~l~~l~~~----~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h 332 (595)
..+. +.++.+.+. -..+..+.++.-| ..+.|++.+++.++.+.+ .|+++|.+.-..|..
T Consensus 94 ~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed---~~r~~~~~l~~~~~~~~~-~Ga~~i~l~DT~G~~- 168 (365)
T TIGR02660 94 PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED---ASRADPDFLVELAEVAAE-AGADRFRFADTVGIL- 168 (365)
T ss_pred ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC---CCCCCHHHHHHHHHHHHH-cCcCEEEEcccCCCC-
Confidence 5321 112222110 1135578888775 467789999999998876 688999999999976
Q ss_pred cccc
Q 007631 333 TAVD 336 (595)
Q Consensus 333 ~P~~ 336 (595)
.|..
T Consensus 169 ~P~~ 172 (365)
T TIGR02660 169 DPFS 172 (365)
T ss_pred CHHH
Confidence 3543
No 90
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=50.97 E-value=1.4e+02 Score=37.50 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHc-CCCCCcEEEE-eccCC-C----C---cc
Q 007631 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQS-SLSGLNVLIE-TYFAD-V----P---AE 250 (595)
Q Consensus 181 l~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~-~~~~~~i~l~-tyfg~-~----~---~~ 250 (595)
.+++...|.+.++.|.+.||+.|=+.= +. | -.+..+...+.+.... ...++.++++ +.+.. . + +.
T Consensus 143 ~del~~~y~eq~~~L~~~GvD~iliET-i~--d--~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~ 217 (1178)
T TIGR02082 143 YDELVDAYTEQAKGLLDGGVDLLLIET-CF--D--TLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEA 217 (1178)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEec-cC--C--HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHH
Confidence 378999999999999999999876652 11 2 2234444444443321 1123568887 66632 1 1 12
Q ss_pred cHHHHhcCCCccEEEEEeecCCCChhhHhhhCC--CCcEEE----EeEeeCCCCCCCCHHHHHHHHHHHH
Q 007631 251 TYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFP--LGKYLF----AGVVDGRNIWANDLASSLTTLQDLA 314 (595)
Q Consensus 251 v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p--~~k~l~----lGVVdgrn~w~ed~~~~~~~i~~~~ 314 (595)
++..+..+ +++++++.+..++..+..+.+.+. .++-++ +|+-+....|-+++++..+.+++..
T Consensus 218 ~~~~l~~~-~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~ 286 (1178)
T TIGR02082 218 FLTSLEHA-GIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFA 286 (1178)
T ss_pred HHHHHhcC-CCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHH
Confidence 25556678 999999999987665555443231 122232 3555555578888887666655543
No 91
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=50.31 E-value=52 Score=34.51 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=38.7
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEee
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~ 269 (595)
+++..++|++.||+| .++.++++.. ...+....++..+-.+ |++. ++ +..+..+ +||.|..=..
T Consensus 202 a~ea~~agaDiI~LD------n~~~e~l~~a---v~~~~~~~~~~~leaS---GGI~~~n-i~~yA~t-GvD~Is~gal 266 (284)
T PRK06096 202 AIAALRAQPDVLQLD------KFSPQQATEI---AQIAPSLAPHCTLSLA---GGINLNT-LKNYADC-GIRLFITSAP 266 (284)
T ss_pred HHHHHHcCCCEEEEC------CCCHHHHHHH---HHHhhccCCCeEEEEE---CCCCHHH-HHHHHhc-CCCEEEECcc
Confidence 455668899999998 3444444433 3333221122333333 8887 56 8888899 9998865543
No 92
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=49.92 E-value=1.6e+02 Score=31.92 Aligned_cols=130 Identities=13% Similarity=0.169 Sum_probs=79.1
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
++++.|.++|++.|.+=-|.. ++++.+.++.. .+.....+ ++++.-...+. ++.+.+. .++.+++=+.
T Consensus 26 ~ia~~L~~~Gv~~IEvG~p~~----~~~~~e~i~~i----~~~~~~~~--v~~~~r~~~~d-i~~a~~~-g~~~i~i~~~ 93 (363)
T TIGR02090 26 EIARKLDELGVDVIEAGFPIA----SEGEFEAIKKI----SQEGLNAE--ICSLARALKKD-IDKAIDC-GVDSIHTFIA 93 (363)
T ss_pred HHHHHHHHcCCCEEEEeCCCC----ChHHHHHHHHH----HhcCCCcE--EEEEcccCHHH-HHHHHHc-CcCEEEEEEc
Confidence 466778899999999865533 33444444433 22112223 33332212233 6677788 8998888544
Q ss_pred cC------------CCChhhHhhh--C--CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCccc
Q 007631 270 RG------------TKTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHT 333 (595)
Q Consensus 270 ~~------------~~~l~~l~~~--~--p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~ 333 (595)
.+ .+.++.+.+. + ..+..+.+++.|+ .+.|++.+++.++.+.+ .|.++|.+.-+.|.+ .
T Consensus 94 ~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda---~r~~~~~l~~~~~~~~~-~g~~~i~l~DT~G~~-~ 168 (363)
T TIGR02090 94 TSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA---TRTDIDFLIKVFKRAEE-AGADRINIADTVGVL-T 168 (363)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec---CCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCcc-C
Confidence 21 0122222220 1 2356788888876 67899999999998865 688999999988865 3
Q ss_pred ccc
Q 007631 334 AVD 336 (595)
Q Consensus 334 P~~ 336 (595)
|.+
T Consensus 169 P~~ 171 (363)
T TIGR02090 169 PQK 171 (363)
T ss_pred HHH
Confidence 443
No 93
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=49.82 E-value=1.9e+02 Score=29.00 Aligned_cols=125 Identities=10% Similarity=0.133 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC--cccHHHHhcCCCccEEEEE
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP--AETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~--~~v~~~l~~l~pvd~i~lD 267 (595)
++++.|.++|+++|-+-+-.-.........+.+.+..+.+ +..+.+. |+++ +. +..+... +++++-+-
T Consensus 31 ~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~-----~~pv~~~---GGI~s~~d-~~~~l~~-G~~~v~ig 100 (243)
T cd04731 31 ELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEV-----FIPLTVG---GGIRSLED-ARRLLRA-GADKVSIN 100 (243)
T ss_pred HHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhC-----CCCEEEe---CCCCCHHH-HHHHHHc-CCceEEEC
Confidence 3555666889997776653221111122344444433322 2456665 4443 22 4455566 77776443
Q ss_pred ee--cCCCChhhHhhhCCCCcEEEEeE-----------eeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 268 LI--RGTKTLDLIKTEFPLGKYLFAGV-----------VDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 268 ~~--~~~~~l~~l~~~~p~~k~l~lGV-----------Vdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
-. .+++-+..+.+.++.++ +.++| |-.|.-+.++.....+.++.+.+ .|.+.+.++.
T Consensus 101 ~~~~~~p~~~~~i~~~~~~~~-i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~G~d~i~v~~ 170 (243)
T cd04731 101 SAAVENPELIREIAKRFGSQC-VVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE-LGAGEILLTS 170 (243)
T ss_pred chhhhChHHHHHHHHHcCCCC-EEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH-CCCCEEEEec
Confidence 22 13333444444465444 33333 22233334445555666666643 5777888865
No 94
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=48.91 E-value=31 Score=36.87 Aligned_cols=107 Identities=21% Similarity=0.410 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEE-----------eccCCCC
Q 007631 180 LIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE-----------TYFADVP 248 (595)
Q Consensus 180 ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~-----------tyfg~~~ 248 (595)
-++++..+|.|.+....++|.+.|-+--=.|+.-. ...+-+.++|..+..... -+++|| .|+|+-+
T Consensus 126 sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A--~~p~DY~~VY~~lL~q~~-~PVILHWLG~mFDPaL~GYWGs~d 202 (382)
T PF06187_consen 126 SLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVA--RSPDDYLRVYDRLLSQAD-EPVILHWLGDMFDPALAGYWGSAD 202 (382)
T ss_dssp -HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH----SHHHHHHHHHHHHHH-S-S-EEEEEE-TTT-GGGTTTTS-SS
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhh--CCHHHHHHHHHHHHHHcC-CCEEEEecccccCcccccccCCCc
Confidence 46899999999999999999998876655554311 123557788888766432 245554 5777543
Q ss_pred --c---ccHHHHh--cCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEe
Q 007631 249 --A---ETYKILT--SLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAG 291 (595)
Q Consensus 249 --~---~v~~~l~--~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lG 291 (595)
. .+++.+. .- +||||-+-+-+...++ .++..+|.+-.+.=|
T Consensus 203 ~~~A~~t~l~lI~~~~~-kVdGIKiSLLD~~~Ei-~lRrrLP~gVr~YTG 250 (382)
T PF06187_consen 203 LDAAMDTVLELIAAHAD-KVDGIKISLLDAEKEI-ALRRRLPEGVRMYTG 250 (382)
T ss_dssp HHHHHHHHHHHHHHTGG-GEEEEEEES--HHHHH-HHHTS--TT-EEEE-
T ss_pred HHHHHHHHHHHHHhChh-hcCeeEecccCcHHHH-HHHHhCCccceeecC
Confidence 1 1244443 34 6888888775532222 133357765544433
No 95
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=47.73 E-value=2e+02 Score=29.13 Aligned_cols=127 Identities=8% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeec
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
+.+.+.++|+++|-+-+=.-........++.+.+..+.+ .+.+.+..-..+..+ +..+... +++++.+.-..
T Consensus 35 ~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~-----~ipv~~~GGi~s~~~--~~~~l~~-Ga~~Viigt~~ 106 (253)
T PRK02083 35 LAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQV-----FIPLTVGGGIRSVED--ARRLLRA-GADKVSINSAA 106 (253)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhC-----CCCEEeeCCCCCHHH--HHHHHHc-CCCEEEEChhH
Confidence 344455889998877652211111122344444443322 245666522222223 4455667 88887665432
Q ss_pred --CCCChhhHhhhCCCCcEE-EEeEee----------CCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 271 --GTKTLDLIKTEFPLGKYL-FAGVVD----------GRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 271 --~~~~l~~l~~~~p~~k~l-~lGVVd----------grn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
++..++.+.+.+++++.+ ++.+-+ .|+-|..+-....+.++++.+ .|.+.+.+.+
T Consensus 107 l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~g~~~ii~~~ 174 (253)
T PRK02083 107 VANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE-LGAGEILLTS 174 (253)
T ss_pred hhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH-cCCCEEEEcC
Confidence 344555555557655543 443322 222222222234455555543 4667777754
No 96
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.56 E-value=85 Score=32.81 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCC--CCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEE
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSL--SGLNVLIETYFADVP-AETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~--~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD 267 (595)
++.+..++|++.||+|-. +.+++ +++...+.... +++.+..+ |++. ++ +..+.++ +||.|..=
T Consensus 194 ea~~a~~agaDiI~LDn~------~~e~l---~~~v~~l~~~~~~~~~~leaS---GGI~~~n-i~~yA~t-GvD~Is~g 259 (278)
T PRK08385 194 DALKAAKAGADIIMLDNM------TPEEI---REVIEALKREGLRERVKIEVS---GGITPEN-IEEYAKL-DVDVISLG 259 (278)
T ss_pred HHHHHHHcCcCEEEECCC------CHHHH---HHHHHHHHhcCcCCCEEEEEE---CCCCHHH-HHHHHHc-CCCEEEeC
Confidence 345556899999999954 33343 33333343211 22333334 7787 66 8888999 99998876
Q ss_pred ee
Q 007631 268 LI 269 (595)
Q Consensus 268 ~~ 269 (595)
..
T Consensus 260 al 261 (278)
T PRK08385 260 AL 261 (278)
T ss_pred hh
Confidence 44
No 97
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=45.72 E-value=39 Score=33.22 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCeEEeec---cccccCCChHHHHHHHHHHHHHHcCCC-CCcEEEEeccCCCCcccHHHHhcCCCccE
Q 007631 188 YKEVVAELKAAGATWIQFDE---PTLVLDLDSHKLQAFSDAYSELQSSLS-GLNVLIETYFADVPAETYKILTSLKGVTG 263 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDE---P~L~~d~~~~~~~~~~~ay~~l~~~~~-~~~i~l~tyfg~~~~~v~~~l~~l~pvd~ 263 (595)
+.+.++.+.++|+++||+|. +... ..+ ...+.++ .+.+..+ ...++|-+| +.. +. ++.+.+. ++|+
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~-~~~-~~~~~~~----~i~~~~~~~~~v~l~v~-d~~-~~-i~~~~~~-g~d~ 87 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVP-NLT-IGPPVVE----AIRKVTKLPLDVHLMVE-NPD-RY-VPDFAKA-GADI 87 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCC-CcC-cCHHHHH----HHHhcCCCcEEEEeeeC-CHH-HH-HHHHHHc-CCCE
Confidence 56678889999999999985 3211 100 0122222 2222111 234666666 322 23 5666788 8999
Q ss_pred --EEEEe
Q 007631 264 --FGFDL 268 (595)
Q Consensus 264 --i~lD~ 268 (595)
+|.+-
T Consensus 88 v~vh~~~ 94 (220)
T PRK05581 88 ITFHVEA 94 (220)
T ss_pred EEEeecc
Confidence 66653
No 98
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=45.63 E-value=3.6e+02 Score=27.77 Aligned_cols=136 Identities=10% Similarity=0.046 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCC-----hHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCcc
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLD-----SHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVT 262 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~-----~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd 262 (595)
.++.+.|.++|+++|.+==|.-..... --+.+.+++...... ++.++.....-+... +. ++...+. +|+
T Consensus 23 ~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~-l~~a~~~-gv~ 97 (266)
T cd07944 23 KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK---GNTKIAVMVDYGNDDIDL-LEPASGS-VVD 97 (266)
T ss_pred HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc---cCCEEEEEECCCCCCHHH-HHHHhcC-CcC
Confidence 456677889999999887554421100 001233333322211 124454443323222 22 4445667 888
Q ss_pred EEEEEeecCCCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccc
Q 007631 263 GFGFDLIRGTKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (595)
Q Consensus 263 ~i~lD~~~~~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~ 336 (595)
.+++=+.. ..++.+.+. . ..+..+.+++.|+-. .+.+.+.+.++++.+ .|++++++.-+.|.+ .|.+
T Consensus 98 ~iri~~~~--~~~~~~~~~i~~ak~~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~~~i~l~DT~G~~-~P~~ 168 (266)
T cd07944 98 MIRVAFHK--HEFDEALPLIKAIKEKGYEVFFNLMAISG---YSDEELLELLELVNE-IKPDVFYIVDSFGSM-YPED 168 (266)
T ss_pred EEEEeccc--ccHHHHHHHHHHHHHCCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCCCEEEEecCCCCC-CHHH
Confidence 88876533 244443321 1 135679999998754 688999999999876 588999999999987 3554
No 99
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=45.22 E-value=56 Score=27.59 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=29.3
Q ss_pred cHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 007631 14 KRELKFALESFWDGKSSADELQNVAADLRASIWNQM 49 (595)
Q Consensus 14 ~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q 49 (595)
+++|...-.+|..|+||++++.+..+++-.+.-..+
T Consensus 34 ~~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~ 69 (79)
T PF05120_consen 34 RRELAELQEALEAGEISEEEFERREDELLDRLEEAR 69 (79)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 477888888999999999999999998866554433
No 100
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=44.21 E-value=3.6e+02 Score=27.42 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEE
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD 267 (595)
.++++.|.++|++.|++-=|.+. +.+.+.++. +.+..++.+ +..+ .... +. ++...+. +++.+++=
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~~~----~~~~e~~~~----l~~~~~~~~--~~~~-~r~~~~~-v~~a~~~-g~~~i~i~ 89 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPAMG----EEEREAIRA----IVALGLPAR--LIVW-CRAVKED-IEAALRC-GVTAVHIS 89 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCCCC----HHHHHHHHH----HHhcCCCCE--EEEe-ccCCHHH-HHHHHhC-CcCEEEEE
Confidence 45667788999999999755432 233333333 332222223 3322 2221 22 5666777 89988886
Q ss_pred eecCCC------------ChhhHhh---hC-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 268 LIRGTK------------TLDLIKT---EF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 268 ~~~~~~------------~l~~l~~---~~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
+..+.. .++.+.. .. ..+..+.+|..|+ .+.+++.+.+.++++.+ .|.++|++.-+.|.+
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~---~~~~~~~~~~~~~~~~~-~G~~~i~l~DT~G~~ 165 (259)
T cd07939 90 IPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDA---SRADPDFLIEFAEVAQE-AGADRLRFADTVGIL 165 (259)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccC---CCCCHHHHHHHHHHHHH-CCCCEEEeCCCCCCC
Confidence 643210 1111111 01 1355788888765 45789999999999876 688999999999976
Q ss_pred ccccccccccCCcHHHHhhhhhHHhHHH
Q 007631 332 HTAVDLENETKLDQEIKSWLAFAAQKVV 359 (595)
Q Consensus 332 h~P~~~~~E~~l~~~~~~~laFA~qKl~ 359 (595)
.| .++...+.-.++++.
T Consensus 166 -~P----------~~v~~lv~~l~~~~~ 182 (259)
T cd07939 166 -DP----------FTTYELIRRLRAATD 182 (259)
T ss_pred -CH----------HHHHHHHHHHHHhcC
Confidence 24 445555555555543
No 101
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=43.88 E-value=2e+02 Score=29.77 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHH
Q 007631 307 LTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVN 362 (595)
Q Consensus 307 ~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~ 362 (595)
...++++++.+|.|+|.+=|||+++. |.....-.+-|..++ .-.|+++||.
T Consensus 185 a~~~~ev~~~iPldrLL~ETDsPyl~-P~p~rGkrNeP~~v~----~v~~~iAelk 235 (256)
T COG0084 185 AEKLREVARELPLDRLLLETDAPYLA-PVPYRGKRNEPAYVR----HVAEKLAELK 235 (256)
T ss_pred cHHHHHHHHhCCHhHeEeccCCCCCC-CcCCCCCCCCchHHH----HHHHHHHHHh
Confidence 45677788889999999999999984 544444333444443 3556666664
No 102
>KOG3338 consensus Divalent cation tolerance-related protein [Inorganic ion transport and metabolism]
Probab=42.28 E-value=21 Score=32.94 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=36.0
Q ss_pred hhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHH
Q 007631 93 VYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEA 144 (595)
Q Consensus 93 ~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a 144 (595)
.||-|..-.... --++||+-+.|..|-|||+.+ .++...+.+++++.+..
T Consensus 95 E~ll~iKtrsSl-~~~Lt~fV~~nHpYeVpEVia-lpi~~gs~~YLeW~~q~ 144 (153)
T KOG3338|consen 95 EYLLIIKTRSSL-HWPLTKFVRGNHPYEVPEVIA-LPIHLGSRPYLEWMNQC 144 (153)
T ss_pred hHHHHHHHhhhh-hhhHHHHHhcCCCccchhhee-eccccCCcHHHHHHHHh
Confidence 466566432222 237899999999999999987 46677778888887654
No 103
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=40.79 E-value=2.3e+02 Score=35.91 Aligned_cols=127 Identities=18% Similarity=0.234 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcC-CCCCcEEEEecc-C-C-----CCc--cc
Q 007631 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSS-LSGLNVLIETYF-A-D-----VPA--ET 251 (595)
Q Consensus 182 ~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~-~~~~~i~l~tyf-g-~-----~~~--~v 251 (595)
+++...|.+.++.|.+.||+.|=|.= + .| -.+..+...+.+..... ..++.++++.-| . + ... .+
T Consensus 160 del~~~y~eQi~~L~e~GVDllliET-i--~d--~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~ 234 (1229)
T PRK09490 160 DELVAAYREQTRGLIEGGADLILIET-I--FD--TLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAF 234 (1229)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEee-e--CC--HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHH
Confidence 78999999999999999999876652 1 12 22444444444443211 123567776444 2 1 111 12
Q ss_pred HHHHhcCCCccEEEEEeecCCCChhhHhhhCC--CCcEEE----EeEeeCCCCCCCCHHHHHHHHHHHH
Q 007631 252 YKILTSLKGVTGFGFDLIRGTKTLDLIKTEFP--LGKYLF----AGVVDGRNIWANDLASSLTTLQDLA 314 (595)
Q Consensus 252 ~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p--~~k~l~----lGVVdgrn~w~ed~~~~~~~i~~~~ 314 (595)
+..+..+ +++++++.+..++..+..+.+.+. .+..++ +|+-+....|-.++++..+.+++..
T Consensus 235 ~~~l~~~-~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~ 302 (1229)
T PRK09490 235 WNSLRHA-KPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFA 302 (1229)
T ss_pred HHHHhcC-CCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3445578 899999999987666655544221 233444 6777777788888888666665543
No 104
>PRK15108 biotin synthase; Provisional
Probab=40.69 E-value=2.2e+02 Score=30.64 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=66.4
Q ss_pred HHHHHHHcCCCeEEeeccccc-cCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 191 VVAELKAAGATWIQFDEPTLV-LDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~-~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
..+...+.|++-|-+= .+ .+.+..+.+.+.++++.+.+ . .+.+ +.+.|......+..|.+. ++|.+++++.
T Consensus 84 ~a~~~~~~G~~~i~i~---~~g~~p~~~~~e~i~~~i~~ik~-~-~i~v--~~s~G~ls~e~l~~LkeA-Gld~~n~~le 155 (345)
T PRK15108 84 SARKAKAAGSTRFCMG---AAWKNPHERDMPYLEQMVQGVKA-M-GLET--CMTLGTLSESQAQRLANA-GLDYYNHNLD 155 (345)
T ss_pred HHHHHHHcCCCEEEEE---ecCCCCCcchHHHHHHHHHHHHh-C-CCEE--EEeCCcCCHHHHHHHHHc-CCCEEeeccc
Confidence 3445667898865221 00 12223356777777777753 1 2344 345676664448899999 9999999886
Q ss_pred cC---------CCChhhHhhh----CCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHh
Q 007631 270 RG---------TKTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAG 315 (595)
Q Consensus 270 ~~---------~~~l~~l~~~----~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~ 315 (595)
.. .++++...+. ...+..+..|+|=|. -|+.++.++.+..+.+
T Consensus 156 T~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl---gEt~ed~v~~~~~l~~ 211 (345)
T PRK15108 156 TSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL---GETVKDRAGLLLQLAN 211 (345)
T ss_pred cChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC---CCCHHHHHHHHHHHHh
Confidence 42 2333333221 123557777877775 4566666666666654
No 105
>PLN02389 biotin synthase
Probab=38.86 E-value=5.2e+02 Score=28.23 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=69.0
Q ss_pred HHHHHHHcCCCeEEeeccccc-cCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 191 VVAELKAAGATWIQFDEPTLV-LDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~-~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
.++++.+.|++.|-|=. .+. ..-.+...+.+.++++.+.+ . .+. ++...|-.....+..|.+. ++|.+++.+.
T Consensus 124 ~a~~~~~~G~~~~~ivt-s~rg~~~e~~~~e~i~eiir~ik~-~-~l~--i~~s~G~l~~E~l~~LkeA-Gld~~~~~Le 197 (379)
T PLN02389 124 AAKRAKEAGSTRFCMGA-AWRDTVGRKTNFNQILEYVKEIRG-M-GME--VCCTLGMLEKEQAAQLKEA-GLTAYNHNLD 197 (379)
T ss_pred HHHHHHHcCCCEEEEEe-cccCCCCChhHHHHHHHHHHHHhc-C-CcE--EEECCCCCCHHHHHHHHHc-CCCEEEeeec
Confidence 44556678998664410 000 11111245666677776753 2 234 4555676664448899999 9999999887
Q ss_pred cC---------CCChhhHhhh----CCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhc-CCCcEEEeC
Q 007631 270 RG---------TKTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV-GKDKVVVST 326 (595)
Q Consensus 270 ~~---------~~~l~~l~~~----~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~-~~~rl~vsp 326 (595)
.. ..+++...+. -..+-.+..|+|=|.. |+.++.++.+..+.+.- .++.+-+++
T Consensus 198 Ts~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlg---Et~edrv~~l~~Lr~L~~~~~~v~l~~ 265 (379)
T PLN02389 198 TSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLG---EAEEDRVGLLHTLATLPEHPESVPINA 265 (379)
T ss_pred CChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCC---CCHHHHHHHHHHHHhcccCCcEEeccc
Confidence 31 2344332220 1134567888888875 55555555555443321 234455544
No 106
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=37.91 E-value=1.3e+02 Score=29.97 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCCeE--EeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCC------C-cccHHH----Hh
Q 007631 190 EVVAELKAAGATWI--QFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADV------P-AETYKI----LT 256 (595)
Q Consensus 190 ~~l~~L~~aG~~~I--QiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~------~-~~v~~~----l~ 256 (595)
..+++..++|++.| |+.+-.+. ..+-.+.+.+..+.... . .+++++-.+..+. . +. +.. ..
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~~~i~~v~~~~~~-~-g~~~iie~~~~g~~~~~~~~~~~-i~~~~~~a~ 153 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEE---EREMLEELARVAAEAHK-Y-GLPLIAWMYPRGPAVKNEKDPDL-IAYAARIGA 153 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCch---HHHHHHHHHHHHHHHHH-c-CCCEEEEEeccCCcccCccCHHH-HHHHHHHHH
Confidence 34567779999987 88754221 11222233333222222 1 3567776554211 1 22 222 45
Q ss_pred cCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCC
Q 007631 257 SLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTS 327 (595)
Q Consensus 257 ~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsps 327 (595)
++ ++|.+.+.+..+.+.++.+.+..+-. .+.. | .+-..|.++.++.++.+.+ .|.+.+.++++
T Consensus 154 ~~-GaD~Ik~~~~~~~~~~~~i~~~~~~p-vv~~----G-G~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~ 216 (235)
T cd00958 154 EL-GADIVKTKYTGDAESFKEVVEGCPVP-VVIA----G-GPKKDSEEEFLKMVYDAME-AGAAGVAVGRN 216 (235)
T ss_pred HH-CCCEEEecCCCCHHHHHHHHhcCCCC-EEEe----C-CCCCCCHHHHHHHHHHHHH-cCCcEEEechh
Confidence 67 88888886543323334443323211 2222 3 3344588888888888876 67777766654
No 107
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.84 E-value=97 Score=32.64 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEee
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~ 269 (595)
++.+..++|++.||+| .++.+++ +++...+.. +..+-.+ |++. ++ +.....+ +||.|..=..
T Consensus 209 ea~~a~~agaDiImLD------nmspe~l---~~av~~~~~---~~~leaS---GGI~~~n-i~~yA~t-GVD~Is~gal 271 (290)
T PRK06559 209 AAEEAAAAGADIIMLD------NMSLEQI---EQAITLIAG---RSRIECS---GNIDMTT-ISRFRGL-AIDYVSSGSL 271 (290)
T ss_pred HHHHHHHcCCCEEEEC------CCCHHHH---HHHHHHhcC---ceEEEEE---CCCCHHH-HHHHHhc-CCCEEEeCcc
Confidence 3455668899999999 4544444 333333322 2233333 7777 56 8888888 9999887654
Q ss_pred c
Q 007631 270 R 270 (595)
Q Consensus 270 ~ 270 (595)
.
T Consensus 272 t 272 (290)
T PRK06559 272 T 272 (290)
T ss_pred c
Confidence 4
No 108
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=36.25 E-value=1.1e+02 Score=32.44 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEee
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~ 269 (595)
++.+..++|++.||+|-. +.+++ +++...+.. ++.+..+ |+++ ++ +..+..+ +||.|.+=..
T Consensus 220 ea~ea~~~gaDiI~LDn~------s~e~~---~~av~~~~~---~~~ieaS---GGI~~~n-i~~yA~t-GVD~Is~gal 282 (296)
T PRK09016 220 ELDQALKAGADIIMLDNF------TTEQM---REAVKRTNG---RALLEVS---GNVTLET-LREFAET-GVDFISVGAL 282 (296)
T ss_pred HHHHHHHcCCCEEEeCCC------ChHHH---HHHHHhhcC---CeEEEEE---CCCCHHH-HHHHHhc-CCCEEEeCcc
Confidence 345566789999999954 33333 333333321 2334344 7787 66 8888999 9999887655
Q ss_pred c
Q 007631 270 R 270 (595)
Q Consensus 270 ~ 270 (595)
.
T Consensus 283 t 283 (296)
T PRK09016 283 T 283 (296)
T ss_pred c
Confidence 4
No 109
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=35.60 E-value=1.3e+02 Score=31.72 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=49.2
Q ss_pred CCeEEeeccccccCCCh-HHHHHHHHHHHHHHcCCCCCcEEEEec-cCCCCcccHHHHhcCCCccEEEEEeec--CCCCh
Q 007631 200 ATWIQFDEPTLVLDLDS-HKLQAFSDAYSELQSSLSGLNVLIETY-FADVPAETYKILTSLKGVTGFGFDLIR--GTKTL 275 (595)
Q Consensus 200 ~~~IQiDEP~L~~d~~~-~~~~~~~~ay~~l~~~~~~~~i~l~ty-fg~~~~~v~~~l~~l~pvd~i~lD~~~--~~~~l 275 (595)
-+.+=+|||.+.+|... +.+-.|-+.|+.-- ..-|+++|. |+++ .. + +=..+++|--. -.+.+
T Consensus 175 p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~----~aTVllTTH~~~di-----~~---l-c~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 175 PKVLFLDEPTVGLDVNAQANIREFLKEYNEER----QATVLLTTHIFDDI-----AT---L-CDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred CcEEEecCCccCcchhHHHHHHHHHHHHHHhh----CceEEEEecchhhH-----HH---h-hhheEEeeCCcEeecccH
Confidence 57899999999998753 23333344444332 246788774 4433 23 3 33467887543 23678
Q ss_pred hhHhhhCCCCcEEEEeE
Q 007631 276 DLIKTEFPLGKYLFAGV 292 (595)
Q Consensus 276 ~~l~~~~p~~k~l~lGV 292 (595)
+.+...|.+.|.+++=+
T Consensus 242 ~~l~~~f~~~k~~~~el 258 (325)
T COG4586 242 AQLQEQFGPYKEFSVEL 258 (325)
T ss_pred HHHHHHhCCceEEEEEE
Confidence 88877677778877655
No 110
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=35.09 E-value=1.3e+02 Score=31.99 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHH------cCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEE
Q 007631 192 VAELKA------AGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGF 264 (595)
Q Consensus 192 l~~L~~------aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i 264 (595)
+.+..+ +|++.||+|-=-+..+......+.++++...+.. ...+-.+ |++. ++ +..+..+ +||.|
T Consensus 216 a~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~---~~~lEaS---GGIt~~n-i~~yA~t-GVD~I 287 (308)
T PLN02716 216 VKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING---RFETEAS---GNVTLDT-VHKIGQT-GVTYI 287 (308)
T ss_pred HHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC---CceEEEE---CCCCHHH-HHHHHHc-CCCEE
Confidence 344567 9999999996423222112245666777665532 1223333 7777 56 7788888 89988
Q ss_pred EEEeec
Q 007631 265 GFDLIR 270 (595)
Q Consensus 265 ~lD~~~ 270 (595)
.+=...
T Consensus 288 s~Galt 293 (308)
T PLN02716 288 SSGALT 293 (308)
T ss_pred EeCccc
Confidence 776543
No 111
>PRK15124 2'-5' RNA ligase; Provisional
Probab=34.96 E-value=2.3e+02 Score=27.10 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=53.9
Q ss_pred ccCCChHHHHHHHHHHHHHHcC-----CCCCcEEEEecc-CCCCcccHHHH----hcCCCccEEEEEeecCCCChhhHhh
Q 007631 211 VLDLDSHKLQAFSDAYSELQSS-----LSGLNVLIETYF-ADVPAETYKIL----TSLKGVTGFGFDLIRGTKTLDLIKT 280 (595)
Q Consensus 211 ~~d~~~~~~~~~~~ay~~l~~~-----~~~~~i~l~tyf-g~~~~~v~~~l----~~l~pvd~i~lD~~~~~~~l~~l~~ 280 (595)
+.+++++..+.+.+....+... .++-++||+-.| |++.+..++.+ .++ ....+.|.+..- .
T Consensus 10 Al~~p~~~~~~l~~~~~~~~~~~~~rwv~~~nlHiTL~FlG~v~~~~~~~l~~~l~~~-~~~pF~l~l~~~----g---- 80 (176)
T PRK15124 10 AIDLPDEIRQQIIHWRATHFPPEAGRPVAAANLHLTLAFLGEVSAEKQQALSQLAGRI-RQPGFTLTLDDA----G---- 80 (176)
T ss_pred EeCCCHHHHHHHHHHHHHhccccCcccccccccEEEEEecCCCCHHHHHHHHHHHHhc-ccCCeEEEECcc----c----
Confidence 4455555555555555444221 223478888665 87764323333 334 455566666431 1
Q ss_pred hCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcC
Q 007631 281 EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG 318 (595)
Q Consensus 281 ~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~ 318 (595)
.||..++|.+|+-.+ .+.+..+.+.|+++....|
T Consensus 81 ~Fp~prvlwlg~~~~----~~~L~~L~~~l~~~l~~~G 114 (176)
T PRK15124 81 QWPRSRVVWLGMRQP----PRGLLQLANMLRSQAARSG 114 (176)
T ss_pred CcCCCCEEEEEcCCC----CHHHHHHHHHHHHHHHHcC
Confidence 266567999999544 2456777777777766554
No 112
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.62 E-value=5.5e+02 Score=27.11 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCCeEEe--eccccccCCChHHHHHHHHHHHHHHcCCCCC-cEEEEeccCCC-CcccHHHHhcCCCccEEE
Q 007631 190 EVVAELKAAGATWIQF--DEPTLVLDLDSHKLQAFSDAYSELQSSLSGL-NVLIETYFADV-PAETYKILTSLKGVTGFG 265 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQi--DEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~-~i~l~tyfg~~-~~~v~~~l~~l~pvd~i~ 265 (595)
.+++.+.+.|++.|.| -||.+..++ .+.+.. +.+. +.+ .+.++|- |.. .+. ++.|.+. .++.+.
T Consensus 52 ~li~~~~~~Gv~~I~~tGGEPllr~dl----~~li~~----i~~~-~~l~~i~itTN-G~ll~~~-~~~L~~a-Gl~~v~ 119 (329)
T PRK13361 52 WLAQAFTELGVRKIRLTGGEPLVRRGC----DQLVAR----LGKL-PGLEELSLTTN-GSRLARF-AAELADA-GLKRLN 119 (329)
T ss_pred HHHHHHHHCCCCEEEEECcCCCccccH----HHHHHH----HHhC-CCCceEEEEeC-hhHHHHH-HHHHHHc-CCCeEE
Confidence 3455566789999999 789765432 222222 2221 112 5667776 543 343 7788888 889888
Q ss_pred EEeecC-CCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEe
Q 007631 266 FDLIRG-TKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVS 325 (595)
Q Consensus 266 lD~~~~-~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vs 325 (595)
+.++.. ++.+.. + .+ ..+.+.+++.|+.+.+ .|...+.|+
T Consensus 120 ISlDs~~~e~~~~----i-----------~~----~g~~~~vl~~i~~~~~-~Gi~~v~in 160 (329)
T PRK13361 120 ISLDTLRPELFAA----L-----------TR----NGRLERVIAGIDAAKA-AGFERIKLN 160 (329)
T ss_pred EEeccCCHHHhhh----h-----------cC----CCCHHHHHHHHHHHHH-cCCCceEEE
Confidence 887652 111111 1 01 1357778888877754 343345544
No 113
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.03 E-value=1.4e+02 Score=31.51 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEee
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~ 269 (595)
.+.+..++|++.||+| .++.++++. +...+.. +..+-.+ |++. ++ +..+..+ +||.|..=..
T Consensus 217 ea~eA~~aGaDiImLD------nmspe~l~~---av~~~~~---~~~lEaS---GGIt~~n-i~~yA~t-GVD~IS~gal 279 (294)
T PRK06978 217 QLETALAHGAQSVLLD------NFTLDMMRE---AVRVTAG---RAVLEVS---GGVNFDT-VRAFAET-GVDRISIGAL 279 (294)
T ss_pred HHHHHHHcCCCEEEEC------CCCHHHHHH---HHHhhcC---CeEEEEE---CCCCHHH-HHHHHhc-CCCEEEeCcc
Confidence 3455668899999999 455444433 3333321 2233333 7777 56 8888888 9998877654
Q ss_pred c
Q 007631 270 R 270 (595)
Q Consensus 270 ~ 270 (595)
.
T Consensus 280 t 280 (294)
T PRK06978 280 T 280 (294)
T ss_pred c
Confidence 3
No 114
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=34.02 E-value=2e+02 Score=28.97 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCCeEEee
Q 007631 187 VYKEVVAELKAAGATWIQFD 206 (595)
Q Consensus 187 aY~~~l~~L~~aG~~~IQiD 206 (595)
-+.+++++|.++|++|+.+|
T Consensus 20 ~l~~~~~~l~~~~~~~~H~D 39 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVD 39 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 45788999999999999999
No 115
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=33.48 E-value=6.6e+02 Score=27.28 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEe
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~ 268 (595)
++++.|.++|++.|.+==|... +.+.+.++.. .+.. ++..+.++ +... .. ++.+.+. +++.+++=+
T Consensus 30 ~ia~~L~~~GV~~IE~G~p~~~----~~~~e~i~~i----~~~~--~~~~i~~~-~r~~~~d-i~~a~~~-g~~~i~i~~ 96 (378)
T PRK11858 30 AIARMLDEIGVDQIEAGFPAVS----EDEKEAIKAI----AKLG--LNASILAL-NRAVKSD-IDASIDC-GVDAVHIFI 96 (378)
T ss_pred HHHHHHHHhCCCEEEEeCCCcC----hHHHHHHHHH----HhcC--CCeEEEEE-cccCHHH-HHHHHhC-CcCEEEEEE
Confidence 4567788999999999877543 3344444433 2211 22333333 3222 22 6677777 888888865
Q ss_pred ecCC------------CChhhHhhh----CCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcc
Q 007631 269 IRGT------------KTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (595)
Q Consensus 269 ~~~~------------~~l~~l~~~----~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h 332 (595)
..+. +.++.+.+. -..+..+.++..| ..+.|++.+++.++.+.+ .|.++|.+.-..|.+
T Consensus 97 ~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed---~~r~~~~~l~~~~~~~~~-~Ga~~I~l~DT~G~~- 171 (378)
T PRK11858 97 ATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED---ASRTDLDFLIEFAKAAEE-AGADRVRFCDTVGIL- 171 (378)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc---CCCCCHHHHHHHHHHHHh-CCCCEEEEeccCCCC-
Confidence 4221 122322220 1135567777765 456799999999999876 688999999988876
Q ss_pred cccc
Q 007631 333 TAVD 336 (595)
Q Consensus 333 ~P~~ 336 (595)
.|.+
T Consensus 172 ~P~~ 175 (378)
T PRK11858 172 DPFT 175 (378)
T ss_pred CHHH
Confidence 3543
No 116
>PRK08005 epimerase; Validated
Probab=33.48 E-value=5e+02 Score=25.94 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCeEEeec--cccccCC--ChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCcc
Q 007631 187 VYKEVVAELKAAGATWIQFDE--PTLVLDL--DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT 262 (595)
Q Consensus 187 aY~~~l~~L~~aG~~~IQiDE--P~L~~d~--~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd 262 (595)
-+.+++++|.++|++||.+|= -.++.++ ....++.+++. . .. +.++||.. .+...- ++.+.+. ++|
T Consensus 14 ~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~----t-~~-~~DvHLMv--~~P~~~-i~~~~~~-gad 83 (210)
T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQ----T-RH-PLSFHLMV--SSPQRW-LPWLAAI-RPG 83 (210)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhc----C-CC-CeEEEecc--CCHHHH-HHHHHHh-CCC
Confidence 457889999999999999991 1111111 23344444432 1 11 24555542 233333 6777777 777
Q ss_pred EEEEEee
Q 007631 263 GFGFDLI 269 (595)
Q Consensus 263 ~i~lD~~ 269 (595)
.+.+-+.
T Consensus 84 ~It~H~E 90 (210)
T PRK08005 84 WIFIHAE 90 (210)
T ss_pred EEEEccc
Confidence 6555443
No 117
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.43 E-value=1.6e+02 Score=30.69 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=38.2
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEee
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~ 269 (595)
+.+..++|+++||+|- ++.++ ++++...+. +++.+... |++. ++ ++.+... +||+|.+=..
T Consensus 202 a~eA~~~gaD~I~LD~------~~~e~---l~~~v~~~~---~~i~leAs---GGIt~~n-i~~~a~t-GvD~Isvg~l 263 (277)
T PRK05742 202 LRQALAAGADIVMLDE------LSLDD---MREAVRLTA---GRAKLEAS---GGINEST-LRVIAET-GVDYISIGAM 263 (277)
T ss_pred HHHHHHcCCCEEEECC------CCHHH---HHHHHHHhC---CCCcEEEE---CCCCHHH-HHHHHHc-CCCEEEEChh
Confidence 3455688999999983 23333 333333231 23444444 7777 67 8888899 9999887654
No 118
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=32.35 E-value=3e+02 Score=31.99 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCC---------CCcccH
Q 007631 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFAD---------VPAETY 252 (595)
Q Consensus 182 ~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~---------~~~~v~ 252 (595)
+++...|.+.++.|.++||+.|=+.- -.+-++..++.++.+... ...++++-.+.+ +.+. +
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET-----~~~~~Ea~a~~~a~~~~~----~~p~~~Sf~~~~~g~l~~G~~~~~~-~ 190 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLET-----FYDLEELLLALEAAREKT----DLPIIAQVAFHEDGVTQNGTSLEEA-L 190 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEc-----cCCHHHHHHHHHHHHHhC----CCcEEEEEEECCCCeeCCCCCHHHH-H
Confidence 68999999999999999999876652 112234444444444331 134555533321 1233 6
Q ss_pred HHHhcCCCccEEEEEeecCCCChhhHhhhCCC--CcEEE----EeE---eeCCCCCCCCHHHHHHHHHHHHhhcCCCcEE
Q 007631 253 KILTSLKGVTGFGFDLIRGTKTLDLIKTEFPL--GKYLF----AGV---VDGRNIWANDLASSLTTLQDLAGTVGKDKVV 323 (595)
Q Consensus 253 ~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~--~k~l~----lGV---Vdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~ 323 (595)
..+.++ +++++++..+.++..+..+.+.+.. ++-++ .|. .+++..|..+++...+...+..+. |. -+
T Consensus 191 ~~~~~~-~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~-Ga--~i 266 (612)
T PRK08645 191 KELVAA-GADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQ-GV--RL 266 (612)
T ss_pred HHHHhC-CCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHh-CC--CE
Confidence 667788 8999999998765555554432321 22222 122 344455667777777766666542 32 23
Q ss_pred EeCCCCC
Q 007631 324 VSTSCSL 330 (595)
Q Consensus 324 vspsCgL 330 (595)
|.-=||-
T Consensus 267 iGGCCgt 273 (612)
T PRK08645 267 IGGCCGT 273 (612)
T ss_pred EeEecCC
Confidence 5555654
No 119
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=32.35 E-value=4.3e+02 Score=26.77 Aligned_cols=125 Identities=6% Similarity=0.068 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC--cccHHHHhcCCCccEEEEEe
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP--AETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~--~~v~~~l~~l~pvd~i~lD~ 268 (595)
+.+.+.+.|+++|.+=+=.=........++.+.+..+.+ ...+.+. |+++ +. +..+..+ +++.+-+--
T Consensus 35 ~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~-----~~pv~~~---GGi~s~~d-~~~~~~~-Ga~~vivgt 104 (254)
T TIGR00735 35 LAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETV-----FIPLTVG---GGIKSIED-VDKLLRA-GADKVSINT 104 (254)
T ss_pred HHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhc-----CCCEEEE---CCCCCHHH-HHHHHHc-CCCEEEECh
Confidence 344555789998877652211111122333333333322 2456665 4443 22 4556667 788765432
Q ss_pred e--cCCCChhhHhhhCCCCc-EEEEeEeeCC-----------CCCCC-CHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 269 I--RGTKTLDLIKTEFPLGK-YLFAGVVDGR-----------NIWAN-DLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 269 ~--~~~~~l~~l~~~~p~~k-~l~lGVVdgr-----------n~w~e-d~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
. .++.-+..+.+.|++++ .+++-+-++. +.|.+ ......+.++.+. ..|.+.+.++.
T Consensus 105 ~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~-~~G~~~iivt~ 176 (254)
T TIGR00735 105 AAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVE-KLGAGEILLTS 176 (254)
T ss_pred hHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHH-HcCCCEEEEeC
Confidence 2 23334444444576444 3455444443 22333 3333445555553 35777888864
No 120
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=32.35 E-value=5.2e+02 Score=25.80 Aligned_cols=150 Identities=11% Similarity=0.109 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCCeEEeeccccccC--CChHHHHHHHHHHHHHHcCCCCCcE-EEEeccCCCCcccHHHHhcCCCccEEE
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLD--LDSHKLQAFSDAYSELQSSLSGLNV-LIETYFADVPAETYKILTSLKGVTGFG 265 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d--~~~~~~~~~~~ay~~l~~~~~~~~i-~l~tyfg~~~~~v~~~l~~l~pvd~i~ 265 (595)
.++++.|.++|+++|.+==|.-..- .-....+.++. +....++.++ .+.+. + .+. ++.+.+. +++.++
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~----l~~~~~~~~~~~l~~~-~--~~~-i~~a~~~-g~~~i~ 92 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRA----IRKLVPNVKLQALVRN-R--EKG-IERALEA-GVDEVR 92 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHH----HHhccCCcEEEEEccC-c--hhh-HHHHHhC-CcCEEE
Confidence 4567778899999999876543200 00122333333 3322222344 22222 1 333 7778888 888887
Q ss_pred EEeecC---------C---CChhhHhhh----CCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCC
Q 007631 266 FDLIRG---------T---KTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCS 329 (595)
Q Consensus 266 lD~~~~---------~---~~l~~l~~~----~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCg 329 (595)
+=+... . +.++.+... -..+..+.+.+.+.-.. ..+++.+.+.++.+.+ .|.+.+.+..+-|
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~l~~~~~~~~~-~g~~~i~l~Dt~G 170 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-KTDPEYVLEVAKALEE-AGADEISLKDTVG 170 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-CCCHHHHHHHHHHHHH-cCCCEEEechhcC
Confidence 776432 0 123333221 12456788888654332 4899999999999876 6788999988766
Q ss_pred CcccccccccccCCcHHHHhhhhhHHhHHHH
Q 007631 330 LLHTAVDLENETKLDQEIKSWLAFAAQKVVE 360 (595)
Q Consensus 330 L~h~P~~~~~E~~l~~~~~~~laFA~qKl~E 360 (595)
.. .|.++...++..++.+..
T Consensus 171 ~~-----------~P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 171 LA-----------TPEEVAELVKALREALPD 190 (265)
T ss_pred Cc-----------CHHHHHHHHHHHHHhCCC
Confidence 52 355666766666665553
No 121
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=31.87 E-value=1.2e+02 Score=29.20 Aligned_cols=20 Identities=40% Similarity=0.704 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCeEEeec
Q 007631 188 YKEVVAELKAAGATWIQFDE 207 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDE 207 (595)
|.+.++.+.++|+++||+|.
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~ 33 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDV 33 (211)
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 56678889999999999985
No 122
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=31.61 E-value=6.7e+02 Score=26.85 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCCeEEee--ccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCC-CCcccHHHHhcCCCccEEE
Q 007631 189 KEVVAELKAAGATWIQFD--EPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFAD-VPAETYKILTSLKGVTGFG 265 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiD--EP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~-~~~~v~~~l~~l~pvd~i~ 265 (595)
.++++++.+.|+..|.|- ||.|..+ ..+.++. +.+. ...+.+.|- |. +.+..++.|.+. +++.+.
T Consensus 52 ~~ii~~~~~~g~~~v~~~GGEPll~~~----~~~il~~----~~~~--g~~~~i~TN-G~ll~~~~~~~L~~~-g~~~v~ 119 (378)
T PRK05301 52 IRVLREARALGALQLHFSGGEPLLRKD----LEELVAH----AREL--GLYTNLITS-GVGLTEARLAALKDA-GLDHIQ 119 (378)
T ss_pred HHHHHHHHHcCCcEEEEECCccCCchh----HHHHHHH----HHHc--CCcEEEECC-CccCCHHHHHHHHHc-CCCEEE
Confidence 455666778899888885 9977533 2233332 2221 244566665 43 343337788888 888777
Q ss_pred EEeec----------CC-CChhhHhhh---CC-CCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCC
Q 007631 266 FDLIR----------GT-KTLDLIKTE---FP-LGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTS 327 (595)
Q Consensus 266 lD~~~----------~~-~~l~~l~~~---~p-~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsps 327 (595)
+.++. +. +.++.+.+. +. .+..+++-+| +...+.+++.+.++-+.+ +|.+.+.+++.
T Consensus 120 iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~v----v~~~N~~~i~~~~~~~~~-lgv~~i~~~~~ 191 (378)
T PRK05301 120 LSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAV----IHRHNIDQIPRIIELAVE-LGADRLELANT 191 (378)
T ss_pred EEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEE----eecCCHHHHHHHHHHHHH-cCCCEEEEecc
Confidence 76653 11 234443221 11 1222333222 233456677666666544 67788887763
No 123
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.52 E-value=1.7e+02 Score=30.65 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=38.9
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEee
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~ 269 (595)
.+.+..++|++.||+| .++.++++ ++...+.. ...+-.+ |++. ++ +.....+ +||.|..=..
T Consensus 205 e~~ea~~~gaDiImLD------n~s~e~l~---~av~~~~~---~~~leaS---GgI~~~n-i~~yA~t-GVD~Is~gal 267 (281)
T PRK06543 205 QIEPVLAAGVDTIMLD------NFSLDDLR---EGVELVDG---RAIVEAS---GNVNLNT-VGAIAST-GVDVISVGAL 267 (281)
T ss_pred HHHHHHhcCCCEEEEC------CCCHHHHH---HHHHHhCC---CeEEEEE---CCCCHHH-HHHHHhc-CCCEEEeCcc
Confidence 3455567899999999 45544443 33333322 2233333 7777 56 7888888 8998877654
Q ss_pred c
Q 007631 270 R 270 (595)
Q Consensus 270 ~ 270 (595)
.
T Consensus 268 t 268 (281)
T PRK06543 268 T 268 (281)
T ss_pred c
Confidence 3
No 124
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=29.82 E-value=2e+02 Score=28.66 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCC--CCcccHHHHhcCCCccEEEE
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFAD--VPAETYKILTSLKGVTGFGF 266 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~--~~~~v~~~l~~l~pvd~i~l 266 (595)
.++++.|.++|++.|.+==|.. .+.+.+.+++.-+.+.+ ..+...+.... .... ++.+... +++.+++
T Consensus 17 ~~i~~~L~~~Gv~~iEvg~~~~----~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~i~~~-~~~~~~~-g~~~i~i 86 (237)
T PF00682_consen 17 LEIAKALDEAGVDYIEVGFPFA----SEDDFEQVRRLREALPN----ARLQALCRANEEDIERA-VEAAKEA-GIDIIRI 86 (237)
T ss_dssp HHHHHHHHHHTTSEEEEEHCTS----SHHHHHHHHHHHHHHHS----SEEEEEEESCHHHHHHH-HHHHHHT-TSSEEEE
T ss_pred HHHHHHHHHhCCCEEEEccccc----CHHHHHHhhhhhhhhcc----cccceeeeehHHHHHHH-HHhhHhc-cCCEEEe
Confidence 4556678899999999884433 34566666666555543 23332222221 1122 3444557 8888887
Q ss_pred EeecCC------------CChhhHhhh--C--CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCC
Q 007631 267 DLIRGT------------KTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSL 330 (595)
Q Consensus 267 D~~~~~------------~~l~~l~~~--~--p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL 330 (595)
=+.-+. +.++.+... + ..+..+.+|+.|. .+.+++.+.+.++.+.+ .|++.+++.-+-|.
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~---~~~~~~~~~~~~~~~~~-~g~~~i~l~Dt~G~ 162 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDA---SRTDPEELLELAEALAE-AGADIIYLADTVGI 162 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTT---GGSSHHHHHHHHHHHHH-HT-SEEEEEETTS-
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccc---ccccHHHHHHHHHHHHH-cCCeEEEeeCccCC
Confidence 764321 013332221 1 1356788888765 46678888888888866 47899999988888
Q ss_pred cccccccccccCCcHHHHhhhhhHHhHHHH
Q 007631 331 LHTAVDLENETKLDQEIKSWLAFAAQKVVE 360 (595)
Q Consensus 331 ~h~P~~~~~E~~l~~~~~~~laFA~qKl~E 360 (595)
.. |. ++...++..++.+.+
T Consensus 163 ~~-P~----------~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 163 MT-PE----------DVAELVRALREALPD 181 (237)
T ss_dssp S--HH----------HHHHHHHHHHHHSTT
T ss_pred cC-HH----------HHHHHHHHHHHhccC
Confidence 72 44 455555555555443
No 125
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=29.60 E-value=1.8e+02 Score=30.05 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=37.5
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEE
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD 267 (595)
+.+..++|+++|++|-.. . +.++++...+.. .+.+... |+++ +| +..+.+. +||+|.+=
T Consensus 191 a~~A~~~gaDyI~ld~~~------~---e~lk~~v~~~~~---~ipi~As---GGI~~~n-i~~~a~~-Gvd~Isvg 250 (265)
T TIGR00078 191 AEEAAEAGADIIMLDNMK------P---EEIKEAVQLLKG---RVLLEAS---GGITLDN-LEEYAET-GVDVISSG 250 (265)
T ss_pred HHHHHHcCCCEEEECCCC------H---HHHHHHHHHhcC---CCcEEEE---CCCCHHH-HHHHHHc-CCCEEEeC
Confidence 444568899999998532 2 233444333322 1334443 7777 67 8888999 99999883
No 126
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=29.57 E-value=6.4e+02 Score=25.97 Aligned_cols=136 Identities=11% Similarity=0.085 Sum_probs=75.9
Q ss_pred HHHHHHHcCCCeEEeecccccc----CCChHHHHHHHHHHHHHHcCCCCCcEEEE-e-----ccCC----CCcccHHHHh
Q 007631 191 VVAELKAAGATWIQFDEPTLVL----DLDSHKLQAFSDAYSELQSSLSGLNVLIE-T-----YFAD----VPAETYKILT 256 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~----d~~~~~~~~~~~ay~~l~~~~~~~~i~l~-t-----yfg~----~~~~v~~~l~ 256 (595)
+...|.++|+++|.+=-|+-.. -....+.+.++..-+.. ++.++... . .|.. +....++...
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~----~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~ 101 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAM----PNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAA 101 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhC----CCCceehhcccccccCccCCCcHHHHHHHHHHH
Confidence 5677889999999998887311 12233444444332222 12233221 1 0111 1111144556
Q ss_pred cCCCccEEEEEeecCCCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcc
Q 007631 257 SLKGVTGFGFDLIRGTKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (595)
Q Consensus 257 ~l~pvd~i~lD~~~~~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h 332 (595)
+. +++.+++=+.- .+++.+... . ..+..+.+++--. ..-+.+++.+++.++++.+ .|.++|.+.-+.|.+.
T Consensus 102 ~~-g~~~iri~~~~--~~~~~~~~~i~~ak~~G~~v~~~i~~~-~~~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~ 176 (275)
T cd07937 102 KN-GIDIFRIFDAL--NDVRNLEVAIKAVKKAGKHVEGAICYT-GSPVHTLEYYVKLAKELED-MGADSICIKDMAGLLT 176 (275)
T ss_pred Hc-CCCEEEEeecC--ChHHHHHHHHHHHHHCCCeEEEEEEec-CCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCCC
Confidence 66 78888884322 234433321 1 1345555555211 2256789999999999876 6889999999999984
Q ss_pred cccc
Q 007631 333 TAVD 336 (595)
Q Consensus 333 ~P~~ 336 (595)
|.+
T Consensus 177 -P~~ 179 (275)
T cd07937 177 -PYA 179 (275)
T ss_pred -HHH
Confidence 443
No 127
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.52 E-value=1.8e+02 Score=30.49 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=37.6
Q ss_pred HHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEee
Q 007631 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 193 ~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~ 269 (595)
.+..++|++.||+|- ++.++ ++++...+.. +..+-.+ |++. ++ +..+..+ +||.|.+=..
T Consensus 208 ~ea~~~gaDiI~LDn------~s~e~---l~~av~~~~~---~~~leaS---GGI~~~n-i~~yA~t-GVD~Is~Gal 268 (281)
T PRK06106 208 EEALELGVDAVLLDN------MTPDT---LREAVAIVAG---RAITEAS---GRITPET-APAIAAS-GVDLISVGWL 268 (281)
T ss_pred HHHHHcCCCEEEeCC------CCHHH---HHHHHHHhCC---CceEEEE---CCCCHHH-HHHHHhc-CCCEEEeChh
Confidence 445588999999994 33333 3444443422 1223333 7777 66 8888899 9998887644
No 128
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=29.33 E-value=2.2e+02 Score=29.80 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=39.9
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEeec
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
+.+-.++|++.|++| +++.++ ++++.+.+.. . -++++- .-|++. ++ ++....+ .||.|.+=+-.
T Consensus 201 ~~eAl~agaDiImLD------Nm~~e~---~~~av~~l~~-~--~~~~lE-aSGgIt~~n-i~~yA~t-GVD~IS~galt 265 (280)
T COG0157 201 AEEALEAGADIIMLD------NMSPEE---LKEAVKLLGL-A--GRALLE-ASGGITLEN-IREYAET-GVDVISVGALT 265 (280)
T ss_pred HHHHHHcCCCEEEec------CCCHHH---HHHHHHHhcc-C--CceEEE-EeCCCCHHH-HHHHhhc-CCCEEEeCccc
Confidence 344558899999999 344433 3444444311 1 134443 338887 56 8888999 99998877654
No 129
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.93 E-value=6.8e+02 Score=26.02 Aligned_cols=136 Identities=9% Similarity=0.090 Sum_probs=81.8
Q ss_pred HHHHHH-HHcCCCeEEeeccccccCCChHHHHHHHHHHHHH--HcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEE
Q 007631 190 EVVAEL-KAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSEL--QSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (595)
Q Consensus 190 ~~l~~L-~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l--~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~l 266 (595)
++++.| .++|++.|++==|.. ++++.+++...-+.- ....+ ++.+..+-.. ... ++...+. .++.+++
T Consensus 23 ~i~~~L~~~~Gv~~IEvg~~~~----s~~e~~av~~~~~~~~~~~~~~--~~~~~a~~~~-~~~-~~~A~~~-g~~~i~i 93 (280)
T cd07945 23 NIAKILLQELKVDRIEVASARV----SEGEFEAVQKIIDWAAEEGLLD--RIEVLGFVDG-DKS-VDWIKSA-GAKVLNL 93 (280)
T ss_pred HHHHHHHHHhCCCEEEecCCCC----CHHHHHHHHHHHHHhhhhcccc--CcEEEEecCc-HHH-HHHHHHC-CCCEEEE
Confidence 455665 566999999875532 344444443332211 11111 2222222122 223 6667777 8899888
Q ss_pred EeecC------------CCChhhHhh---h-CCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCC
Q 007631 267 DLIRG------------TKTLDLIKT---E-FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSL 330 (595)
Q Consensus 267 D~~~~------------~~~l~~l~~---~-~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL 330 (595)
=+..+ .+.++.+.+ . -..+..+.+++-|.-+..+.+++.+++.++.+.+ .|.++|.+.-.-|.
T Consensus 94 ~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~-~G~~~i~l~DT~G~ 172 (280)
T cd07945 94 LTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSD-LPIKRIMLPDTLGI 172 (280)
T ss_pred EEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHH-cCCCEEEecCCCCC
Confidence 87321 122222221 0 1135689999998766778899999999999876 68899999999998
Q ss_pred cccccc
Q 007631 331 LHTAVD 336 (595)
Q Consensus 331 ~h~P~~ 336 (595)
+ .|..
T Consensus 173 ~-~P~~ 177 (280)
T cd07945 173 L-SPFE 177 (280)
T ss_pred C-CHHH
Confidence 7 3654
No 130
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=28.64 E-value=47 Score=22.26 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.5
Q ss_pred HHHHHHHHhhC---CCCCHHHHHHHHHH
Q 007631 16 ELKFALESFWD---GKSSADELQNVAAD 40 (595)
Q Consensus 16 eLK~A~e~yw~---g~i~~~eL~~~~~~ 40 (595)
|++++...|-+ |.||.+||.+..++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 67888888875 88999999988765
No 131
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=27.83 E-value=2e+02 Score=28.53 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCCeEEeec--cccccC--CChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccE
Q 007631 188 YKEVVAELKAAGATWIQFDE--PTLVLD--LDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTG 263 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDE--P~L~~d--~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~ 263 (595)
+.+.+++|.++|++|+.+|= -.++.. .....++.+++. . +..+-+|-...+...- ++.+.+. +++.
T Consensus 14 l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~-----~---~~~~DvHLMv~~P~~~-i~~~~~~-g~~~ 83 (201)
T PF00834_consen 14 LEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKI-----T---DLPLDVHLMVENPERY-IEEFAEA-GADY 83 (201)
T ss_dssp HHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT-----S---SSEEEEEEESSSGGGH-HHHHHHH-T-SE
T ss_pred HHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhc-----C---CCcEEEEeeeccHHHH-HHHHHhc-CCCE
Confidence 46889999999999999991 111111 123333443322 1 2333334344444444 7888888 7887
Q ss_pred EEEEeecCCCChhhHhhhCC-CCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCc-EEEeCCCCCccccccccccc
Q 007631 264 FGFDLIRGTKTLDLIKTEFP-LGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDK-VVVSTSCSLLHTAVDLENET 341 (595)
Q Consensus 264 i~lD~~~~~~~l~~l~~~~p-~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~r-l~vspsCgL~h~P~~~~~E~ 341 (595)
+.+=+.... ++..+.+.+. .+...++.+ |+. ++++ .+++....+ |. ++.+-+=|+.-=
T Consensus 84 i~~H~E~~~-~~~~~i~~ik~~g~k~Gial----nP~-T~~~----~~~~~l~~v--D~VlvMsV~PG~~Gq-------- 143 (201)
T PF00834_consen 84 ITFHAEATE-DPKETIKYIKEAGIKAGIAL----NPE-TPVE----ELEPYLDQV--DMVLVMSVEPGFGGQ-------- 143 (201)
T ss_dssp EEEEGGGTT-THHHHHHHHHHTTSEEEEEE-----TT-S-GG----GGTTTGCCS--SEEEEESS-TTTSSB--------
T ss_pred EEEcccchh-CHHHHHHHHHHhCCCEEEEE----ECC-CCch----HHHHHhhhc--CEEEEEEecCCCCcc--------
Confidence 666554332 2222222111 244454444 221 1222 233333333 34 233333333311
Q ss_pred CCcHHHHhhhhhHHhHHHHHHHHHHH
Q 007631 342 KLDQEIKSWLAFAAQKVVEVNALAKA 367 (595)
Q Consensus 342 ~l~~~~~~~laFA~qKl~El~~l~~~ 367 (595)
.+.....+|++|++.+...
T Consensus 144 -------~f~~~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 144 -------KFIPEVLEKIRELRKLIPE 162 (201)
T ss_dssp ---------HGGHHHHHHHHHHHHHH
T ss_pred -------cccHHHHHHHHHHHHHHHh
Confidence 2334688999999888765
No 132
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=27.75 E-value=2e+02 Score=29.75 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=35.0
Q ss_pred HHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEE
Q 007631 195 LKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGF 266 (595)
Q Consensus 195 L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~l 266 (595)
...+|+++|++|-. .. +.++++...+... +++.+... |++. ++ +..+.+. ++|++.+
T Consensus 197 A~~~gaD~I~ld~~------~~---e~l~~~v~~i~~~-~~i~i~as---GGIt~~n-i~~~a~~-Gad~Isv 254 (269)
T cd01568 197 ALEAGADIIMLDNM------SP---EELKEAVKLLKGL-PRVLLEAS---GGITLEN-IRAYAET-GVDVIST 254 (269)
T ss_pred HHHcCCCEEEECCC------CH---HHHHHHHHHhccC-CCeEEEEE---CCCCHHH-HHHHHHc-CCCEEEE
Confidence 34679999999852 22 2333333333221 22334444 7776 67 8888899 9999976
No 133
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=27.63 E-value=1.5e+02 Score=28.97 Aligned_cols=95 Identities=15% Similarity=0.041 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCeEEeecccccc-CCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 191 VVAELKAAGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~-d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
.++...++|+++||+=.--... .++.+....+.+. +.... ..+.|..- .+.... .+....+ ++|++||--.
T Consensus 11 d~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~---~~~~~--~~V~v~vn-~~~~~i-~~ia~~~-~~d~Vqlhg~ 82 (203)
T cd00405 11 DALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAA---LPPFV--KRVGVFVN-EDLEEI-LEIAEEL-GLDVVQLHGD 82 (203)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHh---CCCCC--cEEEEEeC-CCHHHH-HHHHHhc-CCCEEEECCC
Confidence 4566678999999997521111 1222222222222 11100 12222100 222232 4566778 8999998643
Q ss_pred cCCCChhhHhhhCCCCcEEEEeEe
Q 007631 270 RGTKTLDLIKTEFPLGKYLFAGVV 293 (595)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGVV 293 (595)
........+++.++.+...++|+-
T Consensus 83 e~~~~~~~l~~~~~~~~i~~i~~~ 106 (203)
T cd00405 83 ESPEYCAQLRARLGLPVIKAIRVK 106 (203)
T ss_pred CCHHHHHHHHhhcCCcEEEEEecC
Confidence 322233334332333344456664
No 134
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.86 E-value=7.2e+02 Score=25.34 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEecc-CCCCcccHHHHhcCCC----ccE
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYF-ADVPAETYKILTSLKG----VTG 263 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyf-g~~~~~v~~~l~~l~p----vd~ 263 (595)
.++++.|.++|++.|.+==|.. ++.+.+.+ +.+....++.+ +..+- +...+ ++...+. . ++.
T Consensus 23 ~~i~~~L~~~Gv~~iEvg~~~~----~~~~~~~~----~~l~~~~~~~~--~~~l~r~~~~~--v~~a~~~-~~~~~~~~ 89 (268)
T cd07940 23 LEIARQLDELGVDVIEAGFPAA----SPGDFEAV----KRIAREVLNAE--ICGLARAVKKD--IDAAAEA-LKPAKVDR 89 (268)
T ss_pred HHHHHHHHHcCCCEEEEeCCCC----CHHHHHHH----HHHHHhCCCCE--EEEEccCCHhh--HHHHHHh-CCCCCCCE
Confidence 4567778899999999853332 23333332 33333222223 33332 22222 4555454 4 888
Q ss_pred EEEEeecC------------CCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCC
Q 007631 264 FGFDLIRG------------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTS 327 (595)
Q Consensus 264 i~lD~~~~------------~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsps 327 (595)
+.+=+.-+ .++++.+... . ..+..+.+|..|+- +.+++.+.+.++++.+ .|++.|++.-+
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~-~G~~~i~l~DT 165 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT---RTDLDFLIEVVEAAIE-AGATTINIPDT 165 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC---CCCHHHHHHHHHHHHH-cCCCEEEECCC
Confidence 87754311 1123333221 1 12456888877653 4688988999998876 68899999999
Q ss_pred CCCcccccccccccCCcHHHHhhhhhHHhHHH
Q 007631 328 CSLLHTAVDLENETKLDQEIKSWLAFAAQKVV 359 (595)
Q Consensus 328 CgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~ 359 (595)
.|.++ | .++...++-.++++.
T Consensus 166 ~G~~~-P----------~~v~~lv~~l~~~~~ 186 (268)
T cd07940 166 VGYLT-P----------EEFGELIKKLKENVP 186 (268)
T ss_pred CCCCC-H----------HHHHHHHHHHHHhCC
Confidence 99863 4 455555555555544
No 135
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=25.43 E-value=5.9e+02 Score=26.05 Aligned_cols=114 Identities=14% Similarity=0.211 Sum_probs=63.8
Q ss_pred eEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCc---ccHHHHhc--CCCccEEEEEeecCCCChh
Q 007631 202 WIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPA---ETYKILTS--LKGVTGFGFDLIRGTKTLD 276 (595)
Q Consensus 202 ~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~---~v~~~l~~--l~pvd~i~lD~~~~~~~l~ 276 (595)
.|-|=|-=|- +.++++.+.|+.... |+... ++.+++||.-.+=.+ .+++.+.+ + +-+-+-+|-++ .+.++
T Consensus 97 VvAiGEiGLe-~~t~~E~evf~~QL~-LA~e~-dvPviVHTPr~nK~e~t~~ildi~~~~~l-~~~lvvIDH~N-~etv~ 171 (254)
T COG1099 97 VVAIGEIGLE-EATDEEKEVFREQLE-LAREL-DVPVIVHTPRRNKKEATSKILDILIESGL-KPSLVVIDHVN-EETVD 171 (254)
T ss_pred eeEeeecccc-cCCHHHHHHHHHHHH-HHHHc-CCcEEEeCCCCcchhHHHHHHHHHHHcCC-Chhheehhccc-HHHHH
Confidence 4666664333 356678888877654 43322 367999998765322 12555543 4 34444444333 23344
Q ss_pred hHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 277 LIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 277 ~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
.+.+ .+-.+++-| +- -+=+.++..+.+++- |++|+.+++|||-+
T Consensus 172 ~vld---~e~~vGlTv---qP-gKlt~~eAveIV~ey----~~~r~ilnSD~~s~ 215 (254)
T COG1099 172 EVLD---EEFYVGLTV---QP-GKLTVEEAVEIVREY----GAERIILNSDAGSA 215 (254)
T ss_pred HHHh---ccceEEEEe---cC-CcCCHHHHHHHHHHh----CcceEEEecccccc
Confidence 3332 333444444 22 445556666665543 46999999999976
No 136
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=25.41 E-value=5e+02 Score=26.48 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCeEEeeccccccC--CChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC--cccHHHHhcCCCccEEEE
Q 007631 191 VVAELKAAGATWIQFDEPTLVLD--LDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP--AETYKILTSLKGVTGFGF 266 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d--~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~--~~v~~~l~~l~pvd~i~l 266 (595)
+++.+.+.|+++|.+=+ |..+ ......+.+++ +.... ...+.+. |+++ +. +..+.++ +++++-+
T Consensus 35 ~a~~~~~~g~~~l~i~D--l~~~~~~~~~n~~~i~~----i~~~~-~~pv~~g---GGi~s~~d-~~~l~~~-G~~~vvi 102 (258)
T PRK01033 35 AVRIFNEKEVDELIVLD--IDASKRGSEPNYELIEN----LASEC-FMPLCYG---GGIKTLEQ-AKKIFSL-GVEKVSI 102 (258)
T ss_pred HHHHHHHcCCCEEEEEE--CCCCcCCCcccHHHHHH----HHHhC-CCCEEEC---CCCCCHHH-HHHHHHC-CCCEEEE
Confidence 45666789998765543 1111 11123344433 33321 2445443 3443 22 4456677 8888765
Q ss_pred Eeec--CCCChhhHhhhCCCCcEEEEeEeeCCC
Q 007631 267 DLIR--GTKTLDLIKTEFPLGKYLFAGVVDGRN 297 (595)
Q Consensus 267 D~~~--~~~~l~~l~~~~p~~k~l~lGVVdgrn 297 (595)
.-.. ++.-+..+.+.+++++ ++++| |.|+
T Consensus 103 gs~~~~~~~~~~~~~~~~~~~~-i~vsi-D~k~ 133 (258)
T PRK01033 103 NTAALEDPDLITEAAERFGSQS-VVVSI-DVKK 133 (258)
T ss_pred ChHHhcCHHHHHHHHHHhCCCc-EEEEE-EEec
Confidence 5321 2223333433465444 44444 6554
No 137
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=23.93 E-value=2.2e+02 Score=24.03 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 007631 446 LRRVRREFKAKKISEDDYVKTIKEEINNVVKLQ 478 (595)
Q Consensus 446 l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Q 478 (595)
|.....++..|+||.++|++..++-...+-..+
T Consensus 37 L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~ 69 (79)
T PF05120_consen 37 LAELQEALEAGEISEEEFERREDELLDRLEEAR 69 (79)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444556788999999999998887666655444
No 138
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=23.76 E-value=2.7e+02 Score=28.86 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=34.1
Q ss_pred HHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEE
Q 007631 195 LKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGF 266 (595)
Q Consensus 195 L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~l 266 (595)
..++|+++|++| |.. ..+.+ ++...+....+++.+... |+++ ++ +..+.+. +||+|.+
T Consensus 199 A~~~gaD~I~ld-~~~-----p~~l~---~~~~~~~~~~~~i~i~As---GGI~~~n-i~~~~~~-Gvd~I~v 257 (272)
T cd01573 199 AAEAGADILQLD-KFS-----PEELA---ELVPKLRSLAPPVLLAAA---GGINIEN-AAAYAAA-GADILVT 257 (272)
T ss_pred HHHcCCCEEEEC-CCC-----HHHHH---HHHHHHhccCCCceEEEE---CCCCHHH-HHHHHHc-CCcEEEE
Confidence 447899999999 322 22333 222223221123344444 7776 66 7888888 9999844
No 139
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=23.56 E-value=8.9e+02 Score=25.57 Aligned_cols=141 Identities=17% Similarity=0.209 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEec-cCCCCcccHHHHhcCCCccEEEE-
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETY-FADVPAETYKILTSLKGVTGFGF- 266 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~ty-fg~~~~~v~~~l~~l~pvd~i~l- 266 (595)
.++++.+.+.|++.|.|-=--. .|+.+...+.+.+.++.|.+..+.+.|.+.+. |-+..+. ++.+.+. +.|.+..
T Consensus 97 ~~~a~~~~~~GlkevvLTsv~~-ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~-l~~l~~a-G~dv~~hn 173 (302)
T TIGR00510 97 AKLAETIKDMGLKYVVITSVDR-DDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAA-LDILLDA-PPDVYNHN 173 (302)
T ss_pred HHHHHHHHHCCCCEEEEEeecC-CCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHH-HHHHHHc-Cchhhccc
Confidence 5666777889998775541100 02222234556777777765334344555432 2112233 7777776 6665544
Q ss_pred -Eee-------cCCCChh----hHhh--hCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC--CCCC
Q 007631 267 -DLI-------RGTKTLD----LIKT--EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST--SCSL 330 (595)
Q Consensus 267 -D~~-------~~~~~l~----~l~~--~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp--sCgL 330 (595)
|-+ +...+.+ .+.. ...++-.+.-|+|=|- -|+.+++.+.++.+.+ +|.+.+.|.. +=|-
T Consensus 174 lEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl---GETeee~~etl~~Lre-lg~d~v~igqYl~p~~ 249 (302)
T TIGR00510 174 LETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGL---GETNEEIKQTLKDLRD-HGVTMVTLGQYLRPSR 249 (302)
T ss_pred ccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEEC---CCCHHHHHHHHHHHHh-cCCCEEEeecccCCCC
Confidence 222 2222222 2222 1212445566666665 4888888888888865 5777776643 2236
Q ss_pred cccccc
Q 007631 331 LHTAVD 336 (595)
Q Consensus 331 ~h~P~~ 336 (595)
.|+|+.
T Consensus 250 ~~~~v~ 255 (302)
T TIGR00510 250 RHLPVK 255 (302)
T ss_pred CCCccc
Confidence 788886
No 140
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.11 E-value=2.9e+02 Score=28.64 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=39.1
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEeec
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
+.+..++|+++||+|- +. .+.++++...+.. ++.+... |++. +| ++.+.+. +||+|.+=...
T Consensus 195 a~~A~~~gaDyI~ld~------~~---~e~l~~~~~~~~~---~ipi~Ai---GGI~~~n-i~~~a~~-Gvd~Iav~sl~ 257 (268)
T cd01572 195 LKEALEAGADIIMLDN------MS---PEELREAVALLKG---RVLLEAS---GGITLEN-IRAYAET-GVDYISVGALT 257 (268)
T ss_pred HHHHHHcCCCEEEECC------cC---HHHHHHHHHHcCC---CCcEEEE---CCCCHHH-HHHHHHc-CCCEEEEEeee
Confidence 3445578999999983 22 2344444433321 2344444 8887 67 8888899 99998876443
No 141
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.43 E-value=8.6e+02 Score=24.62 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccccCC---C-----hHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcC
Q 007631 187 VYKEVVAELKAAGATWIQFDEPTLVLDL---D-----SHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSL 258 (595)
Q Consensus 187 aY~~~l~~L~~aG~~~IQiDEP~L~~d~---~-----~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l 258 (595)
-+.++++++.++|++||-+| ++|- + ..-++++++ . ... ..++||.. .+.... ++.+.+.
T Consensus 17 ~l~~el~~~~~agad~iH~D----VMDghFVPNiTfGp~~v~~l~~----~-t~~-p~DvHLMV--~~p~~~-i~~fa~a 83 (220)
T COG0036 17 RLGEELKALEAAGADLIHID----VMDGHFVPNITFGPPVVKALRK----I-TDL-PLDVHLMV--ENPDRY-IEAFAKA 83 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEe----ccCCCcCCCcccCHHHHHHHhh----c-CCC-ceEEEEec--CCHHHH-HHHHHHh
Confidence 45788999999999999999 4441 1 223344333 1 112 24455432 233333 7777777
Q ss_pred CCccEEEEEe
Q 007631 259 KGVTGFGFDL 268 (595)
Q Consensus 259 ~pvd~i~lD~ 268 (595)
++|-|.+=+
T Consensus 84 -gad~It~H~ 92 (220)
T COG0036 84 -GADIITFHA 92 (220)
T ss_pred -CCCEEEEEe
Confidence 777554443
No 142
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=20.72 E-value=4.9e+02 Score=27.29 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCC-ChHHHHHHHHHHHHHHcCCCCCcEEE----------EeccCCC
Q 007631 179 SLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDL-DSHKLQAFSDAYSELQSSLSGLNVLI----------ETYFADV 247 (595)
Q Consensus 179 ~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~-~~~~~~~~~~ay~~l~~~~~~~~i~l----------~tyfg~~ 247 (595)
+.++.=.....++++....+|+..|-+.- -..... .++-++.+.++++.+... ..+.+++ .+-||.+
T Consensus 80 e~~ekS~~~l~~e~~r~~~lG~~~lv~Hp-G~~~~~~~e~~l~~i~~~Ln~~~~~-~~v~i~~e~~agegs~~g~~F~~L 157 (280)
T COG0648 80 EKVEKSIERLIDEIDRCEQLGAKLLVFHP-GSYLGQGKEEGLNRIAEALNELLEE-EGVIILLENTAGEGSGKGTQFGEL 157 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEECC-ccccCCCHHHHHHHHHHHHHHHhhc-cCCeEEEEEeccccCccccchhhH
Confidence 67778888889999999999999998884 333333 234466677777666542 2233443 2456665
Q ss_pred CcccHHHHhcCCCccEEEEEeec
Q 007631 248 PAETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 248 ~~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
.++ ++.+.+. .==+.-||+++
T Consensus 158 ~ei-i~~~~~~-~~igvCiDtcH 178 (280)
T COG0648 158 AEI-IDLIEEK-ERIGVCIDTCH 178 (280)
T ss_pred HHH-HHhhccc-CceEEEEEchh
Confidence 554 5555555 43457778776
No 143
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.61 E-value=2.7e+02 Score=29.09 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=36.9
Q ss_pred HHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEeec
Q 007631 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 193 ~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
++..++|+++|++|- ++. +.++++...+. +++.+... |++. +| ++.+.+. +||++.+=...
T Consensus 202 ~~A~~~gaDyI~lD~------~~~---e~l~~~~~~~~---~~i~i~Ai---GGIt~~n-i~~~a~~-Gvd~IAvg~l~ 263 (277)
T PRK08072 202 REAVAAGADIIMFDN------RTP---DEIREFVKLVP---SAIVTEAS---GGITLEN-LPAYGGT-GVDYISLGFLT 263 (277)
T ss_pred HHHHHcCCCEEEECC------CCH---HHHHHHHHhcC---CCceEEEE---CCCCHHH-HHHHHHc-CCCEEEEChhh
Confidence 444578999999972 332 33444433231 11222222 7776 67 8888998 99998876543
No 144
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.51 E-value=1e+03 Score=25.15 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCeEEee--ccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCC-CCcccHHHHhcCCCccEEE
Q 007631 189 KEVVAELKAAGATWIQFD--EPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFAD-VPAETYKILTSLKGVTGFG 265 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiD--EP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~-~~~~v~~~l~~l~pvd~i~ 265 (595)
.++++++.+.|+..|-|- ||.|..+ ..+.++.+ ... .+.+.++|- |. +.+..++.|.+. +++.+.
T Consensus 43 ~~ii~~~~~~g~~~v~~~GGEPll~~~----~~~ii~~~----~~~--g~~~~l~TN-G~ll~~e~~~~L~~~-g~~~v~ 110 (358)
T TIGR02109 43 TDVLTQAAELGVLQLHFSGGEPLARPD----LVELVAHA----RRL--GLYTNLITS-GVGLTEARLDALADA-GLDHVQ 110 (358)
T ss_pred HHHHHHHHhcCCcEEEEeCcccccccc----HHHHHHHH----HHc--CCeEEEEeC-CccCCHHHHHHHHhC-CCCEEE
Confidence 456667778899888885 9987643 23333322 221 245566665 53 343337778888 888887
Q ss_pred EEeecC-----------CCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 266 FDLIRG-----------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 266 lD~~~~-----------~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
+.++.. .+.++.+.+. + ..+..+.+-++ +...+.+++.+.++-+.+ +|.+.+.+++
T Consensus 111 iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~v----v~~~N~~~l~~~~~~~~~-lg~~~i~~~~ 181 (358)
T TIGR02109 111 LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFV----IHRHNIDQIPEIIELAIE-LGADRVELAT 181 (358)
T ss_pred EeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEE----eccCCHHHHHHHHHHHHH-cCCCEEEEEe
Confidence 777531 1233332221 1 11222222222 234566777666666544 6777887765
No 145
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=20.24 E-value=1.7e+02 Score=30.71 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCCEeecCccccc
Q 007631 468 KEEINNVVKLQEELDIDVLVHGEPERN 494 (595)
Q Consensus 468 ~~ai~~~V~~Qe~~GldvitdGE~~R~ 494 (595)
+++|..+.+..++++.||+|=|.+.|.
T Consensus 270 deei~~tl~dLr~~~vdv~t~gqym~p 296 (360)
T KOG2672|consen 270 DEEIKQTLKDLRAADVDVVTFGQYMQP 296 (360)
T ss_pred HHHHHHHHHHHHHcCCcEEecccccCC
Confidence 355677788899999999999998665
Done!