Query 007631
Match_columns 595
No_of_seqs 359 out of 1807
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ppg_A 5-methyltetrahydroptero 100.0 2E-164 8E-169 1393.0 57.4 584 2-591 25-621 (789)
2 1t7l_A 5-methyltetrahydroptero 100.0 3E-149 1E-153 1264.2 45.2 557 2-591 34-594 (766)
3 1u1j_A 5-methyltetrahydroptero 100.0 5E-146 2E-150 1259.4 53.8 587 1-591 1-590 (765)
4 2nq5_A 5-methyltetrahydroptero 100.0 6E-144 2E-148 1238.4 50.6 569 1-591 4-575 (755)
5 1t7l_A 5-methyltetrahydroptero 100.0 8E-57 2.7E-61 509.6 27.0 317 2-359 438-762 (766)
6 3rpd_A Methionine synthase (B1 100.0 1.5E-50 5.1E-55 428.7 25.0 312 2-369 20-350 (357)
7 1ypx_A Putative vitamin-B12 in 100.0 2.9E-49 1E-53 422.2 24.5 324 2-370 9-366 (375)
8 3ppg_A 5-methyltetrahydroptero 100.0 2.3E-43 7.9E-48 401.3 29.1 312 2-369 465-786 (789)
9 3rpd_A Methionine synthase (B1 100.0 3.5E-45 1.2E-49 387.5 10.3 171 419-591 5-176 (357)
10 2nq5_A 5-methyltetrahydroptero 100.0 1.1E-40 3.9E-45 382.9 24.7 313 2-369 419-742 (755)
11 1u1j_A 5-methyltetrahydroptero 100.0 1.3E-40 4.4E-45 383.5 24.3 313 2-369 434-758 (765)
12 1ypx_A Putative vitamin-B12 in 100.0 1.1E-37 3.7E-42 332.9 11.6 161 429-591 4-172 (375)
13 1j93_A UROD, uroporphyrinogen 99.1 5.9E-10 2E-14 117.5 14.4 185 136-331 129-333 (353)
14 2inf_A URO-D, UPD, uroporphyri 99.1 4.8E-09 1.6E-13 110.8 19.6 181 136-331 130-331 (359)
15 1r3s_A URO-D, uroporphyrinogen 98.5 2.8E-06 9.4E-11 89.9 16.9 185 137-331 134-342 (367)
16 3cyv_A URO-D, UPD, uroporphyri 98.4 3.1E-06 1.1E-10 89.0 15.2 185 137-331 124-330 (354)
17 2eja_A URO-D, UPD, uroporphyri 98.3 4.9E-06 1.7E-10 86.9 14.3 181 137-330 117-316 (338)
18 4exq_A UPD, URO-D, uroporphyri 97.7 0.00094 3.2E-08 70.6 16.6 185 137-331 129-340 (368)
19 4ay7_A Methylcobalamin\: coenz 97.4 0.0022 7.5E-08 67.0 15.8 184 137-331 133-328 (348)
20 3nl6_A Thiamine biosynthetic b 86.1 1.5 5.1E-05 48.5 8.1 108 190-326 29-139 (540)
21 3o63_A Probable thiamine-phosp 85.8 11 0.00038 37.0 13.5 112 190-326 47-163 (243)
22 2tps_A Protein (thiamin phosph 69.9 55 0.0019 30.7 12.8 108 189-326 34-144 (227)
23 1yad_A Regulatory protein TENI 69.3 76 0.0026 29.8 13.7 104 192-326 35-138 (221)
24 3rhg_A Putative phophotriester 69.0 56 0.0019 33.9 13.4 151 182-336 140-302 (365)
25 3gtx_A Organophosphorus hydrol 65.1 24 0.00083 36.2 9.6 129 198-331 151-284 (339)
26 1ur4_A Galactanase; hydrolase, 61.2 1.5E+02 0.0052 31.0 15.1 126 176-330 131-268 (399)
27 1q7z_A 5-methyltetrahydrofolat 57.4 20 0.00068 39.6 7.7 122 182-313 122-261 (566)
28 4dnh_A Uncharacterized protein 55.9 19 0.00063 37.0 6.4 104 181-289 132-253 (396)
29 3tn4_A Phosphotriesterase; lac 54.5 26 0.0009 36.4 7.7 108 214-329 187-302 (360)
30 2ob3_A Parathion hydrolase; me 54.1 1.1E+02 0.0037 30.8 12.2 124 201-330 130-270 (330)
31 1vzw_A Phosphoribosyl isomeras 50.1 23 0.00079 34.0 6.1 124 193-326 39-167 (244)
32 1xi3_A Thiamine phosphate pyro 49.7 46 0.0016 30.9 8.0 108 189-326 29-136 (215)
33 2y88_A Phosphoribosyl isomeras 46.6 16 0.00054 35.1 4.2 121 191-326 36-170 (244)
34 1qo2_A Molecule: N-((5-phospho 45.9 42 0.0014 32.1 7.2 122 191-326 35-165 (241)
35 1nvm_A HOA, 4-hydroxy-2-oxoval 45.4 1.9E+02 0.0065 29.4 12.5 136 189-336 33-179 (345)
36 1rd5_A Tryptophan synthase alp 43.3 30 0.001 33.8 5.7 77 187-266 33-124 (262)
37 3l0g_A Nicotinate-nucleotide p 43.2 60 0.0021 32.8 8.0 62 191-269 219-281 (300)
38 1o4u_A Type II quinolic acid p 42.6 63 0.0022 32.4 8.0 63 192-268 206-269 (285)
39 3k2g_A Resiniferatoxin-binding 42.2 56 0.0019 33.8 7.9 114 214-331 184-308 (364)
40 3tqv_A Nicotinate-nucleotide p 41.0 69 0.0024 32.2 8.0 60 191-267 210-270 (287)
41 1thf_D HISF protein; thermophI 40.8 66 0.0023 30.7 7.8 69 193-269 37-105 (253)
42 1tqj_A Ribulose-phosphate 3-ep 39.2 1.2E+02 0.004 29.1 9.2 72 189-269 20-94 (230)
43 1qpo_A Quinolinate acid phosph 39.1 69 0.0024 32.1 7.7 63 191-267 206-269 (284)
44 1rpx_A Protein (ribulose-phosp 36.7 67 0.0023 30.4 7.0 72 189-269 26-100 (230)
45 3pnz_A Phosphotriesterase fami 36.1 1.2E+02 0.0042 30.7 9.2 144 182-332 129-277 (330)
46 3paj_A Nicotinate-nucleotide p 35.9 80 0.0027 32.2 7.6 59 192-267 244-303 (320)
47 3iix_A Biotin synthetase, puta 34.2 3.5E+02 0.012 26.8 12.3 128 192-334 93-237 (348)
48 3gnn_A Nicotinate-nucleotide p 32.7 76 0.0026 32.1 6.7 60 192-268 222-282 (298)
49 3t7v_A Methylornithine synthas 32.7 2.4E+02 0.0081 28.3 10.8 131 192-335 100-247 (350)
50 1h5y_A HISF; histidine biosynt 32.6 60 0.0021 30.6 5.9 72 189-268 36-107 (253)
51 2ffi_A 2-pyrone-4,6-dicarboxyl 31.4 1.8E+02 0.0062 27.9 9.3 134 190-331 96-240 (288)
52 3ovg_A Amidohydrolase; structu 31.2 1.1E+02 0.0036 31.8 7.8 111 215-331 164-278 (363)
53 1ka9_F Imidazole glycerol phos 28.5 54 0.0018 31.4 4.7 86 190-283 35-122 (252)
54 2jvf_A De novo protein M7; tet 27.7 67 0.0023 25.4 4.1 24 183-206 30-53 (96)
55 3vnd_A TSA, tryptophan synthas 27.2 1E+02 0.0036 30.4 6.6 76 188-266 34-129 (267)
56 2fli_A Ribulose-phosphate 3-ep 26.7 1.7E+02 0.0059 27.0 7.9 95 189-292 19-116 (220)
57 2w6r_A Imidazole glycerol phos 26.1 58 0.002 31.5 4.5 71 190-268 34-104 (266)
58 1ete_A FLT3 ligand; four-helix 25.9 40 0.0014 29.2 2.8 12 325-336 1-12 (134)
59 4i6k_A Amidohydrolase family p 24.4 87 0.003 30.7 5.5 136 190-333 109-254 (294)
60 2b7n_A Probable nicotinate-nuc 24.1 1.5E+02 0.005 29.3 7.1 56 197-266 200-256 (273)
61 1r30_A Biotin synthase; SAM ra 23.9 5.6E+02 0.019 25.7 13.4 129 191-334 107-254 (369)
62 3a98_A DOCK2, dedicator of cyt 23.7 1.2E+02 0.004 28.1 5.9 44 445-488 130-173 (184)
63 2v82_A 2-dehydro-3-deoxy-6-pho 23.5 1.5E+02 0.0052 27.4 6.8 64 189-267 22-87 (212)
64 3gg7_A Uncharacterized metallo 23.4 84 0.0029 30.7 5.1 45 309-362 178-223 (254)
65 2jbm_A Nicotinate-nucleotide p 23.3 1.6E+02 0.0056 29.5 7.3 61 192-266 210-271 (299)
66 1h1y_A D-ribulose-5-phosphate 22.1 4.5E+02 0.015 24.6 10.0 18 190-207 23-40 (228)
67 2xf7_A GP23.1; viral protein; 21.8 69 0.0024 23.0 2.9 19 449-467 24-42 (51)
No 1
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A
Probab=100.00 E-value=2.3e-164 Score=1393.04 Aligned_cols=584 Identities=50% Similarity=0.800 Sum_probs=559.0
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+||++||||||++||||+|+|+||+|+||+++|.++++++|+++|+.|+++|||+||+|||||||||||+++|||+||+|
T Consensus 25 ~~~~lg~prig~~relk~a~e~yw~g~~~~~eL~~~~~~lr~~~w~~q~~aGid~ip~~dFs~YD~vLd~~~~~g~ip~r 104 (789)
T 3ppg_A 25 QSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSNDFSYYDQVLDLSLLFNAIPER 104 (789)
T ss_dssp CEECSCCCCSCTTCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSBCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred HHhhcCCCCcCCccHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEecCCCcchHHHHHHHHHhCCCchh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccchhhhhhcCCC----------CCCccccceecccCceeecceecCCCccccC---CcccHHHHHHHHHcC
Q 007631 82 YSWNGGEIGFDVYFSMARGNA----------SVPAMEMTKWFDTNYHYIVPELGPDVNFSYA---SHKAVQEYKEAKALG 148 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~----------~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~---~~~~~~~~~~a~~~g 148 (595)
|+... ..+|++||+||||.. +++|+||||||||||||+||||.+++.|+++ .++++++|++|+++|
T Consensus 105 ~~~~~-~~~l~~yf~~arg~~~~~~~~~~~~~~~a~eMtKWFdTNYHYiVPE~~~~~~f~l~~~~~~k~~~e~~eAk~~G 183 (789)
T 3ppg_A 105 YTKFD-LAPIDVLFAMGRGLQAAATATQAAVDVTALEMVKWFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKALG 183 (789)
T ss_dssp GGSSC-CCHHHHHHHHHHCEEECC-----CEEECCCCEEECTTSSCEEECCEECTTCCCCCCGGGCCHHHHHHHHHHHTT
T ss_pred hcccC-CCcHHHHHHHhcCCccccccccccCCcccccccccccCCCCeeceEECCCCCeeeccccchhHHHHHHHHHHcC
Confidence 98532 346999999999965 5779999999999999999999999999999 899999999999999
Q ss_pred CCCceEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHH
Q 007631 149 METVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSE 228 (595)
Q Consensus 149 ~~~K~vl~GP~T~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~ 228 (595)
+.+||||+||+|||+|||..++- .++++.+++++|+++|.++|++|.++||+|||||||+|++|+++++++++.++|+.
T Consensus 184 ~~~kpVl~GPvT~L~L~k~~~~~-~~~~~~~lL~~Ll~~Y~~~l~~L~~~G~~wVQiDEP~Lv~dl~~~~~~~~~~aY~~ 262 (789)
T 3ppg_A 184 VQTRPVILGPVSYLYLGKADKDS-LDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYDA 262 (789)
T ss_dssp CCCEEEEECHHHHHHTCEECGGG-TTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHTHHHHHHHH
T ss_pred CCCCceeecHHHHHHHhcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCCeeecCCCHHHHHHHHHHHHH
Confidence 99999999999999999931210 13688899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHH
Q 007631 229 LQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLT 308 (595)
Q Consensus 229 l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~ 308 (595)
|.+. +.++|+|+||||+++++ ++.|.++ ||+||||||++++++++.+...||++|.|++|||||||||++|++++++
T Consensus 263 L~~~-~~~kill~TYFg~~~~~-l~~l~~l-pV~gl~lDlv~~~~~l~~v~~~~~~~k~L~aGvVdGRNiWr~dl~~~l~ 339 (789)
T 3ppg_A 263 LVGA-DVPELILTTYFGDVRPN-LKAIENL-PVAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKASA 339 (789)
T ss_dssp HCST-TSCEEEEECCSSCCGGG-HHHHTTC-CCSEEEEETTTCGGGHHHHHHTCCTTCEEEEEEECSSCCBCCCHHHHHH
T ss_pred HhhC-CCCCEEEECCCCCHHHH-HHHHHcC-CCcEEEEEccCCcchHHHHHhhcCCCCeEEEEEecCCccccCCHHHHHH
Confidence 9763 34799999999999988 9999999 9999999999988899999878999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 007631 309 TLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRK 388 (595)
Q Consensus 309 ~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~ 388 (595)
+|+++.+.+|.++|||||||||+|||+|++.|++||+++++|||||+|||.||+.|++++.+++..+++.+|.+++++|+
T Consensus 340 ~l~~l~~~lg~~~l~vspScSLlHvP~~l~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 419 (789)
T 3ppg_A 340 VVQKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARS 419 (789)
T ss_dssp HHHHHHHHHCGGGEEEEESSCGGGSCSCGGGCSSSCHHHHTTBCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEeCCCCCCCCCcccccccCCCHHHHhhcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh
Confidence 99999998998999999999999999999999999999999999999999999999999987556778999999999999
Q ss_pred cCCCCCCHHHHhHHhhCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007631 389 SSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIK 468 (595)
Q Consensus 389 ~~~~~~~~~v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~ 468 (595)
.|++++|++||+|+++|+++|++|.+||++|+++|+++|+||+||||||||||||+||+++|++|++|+||.++|+++++
T Consensus 420 ~~~~~~~~~v~~r~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~ptt~VGSfPRp~~L~~aR~~~~~G~is~~el~~~~~ 499 (789)
T 3ppg_A 420 ESSITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQITAEEYEAFIN 499 (789)
T ss_dssp TCSSSCCHHHHHHHHTCCTGGGSCSSCHHHHHHHHHHHHCCCSSCBBCCSCCCCCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred cccccCCHHHHHHHHhCCHhhhccCCchHHHHHHHHHhcCCCCceeccccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHh
Q 007631 469 EEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQS 548 (595)
Q Consensus 469 ~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~ 548 (595)
++|+++|++|+++||||||||||+|+|||+||+++|+||+++.+||||+||++|+++|+|+|+|++++||+++|++|+|+
T Consensus 500 ~aI~~vV~~Qe~~GLdvvtDGE~~R~d~v~~F~e~L~G~~~~~~g~vq~~g~r~~~~p~i~G~V~~~~p~~v~~~~~~qs 579 (789)
T 3ppg_A 500 KEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQS 579 (789)
T ss_dssp HHHHHHHHHHHHHTCSBBCCCCTTCSCTTHHHHTTSEEEECCSSCCEEEETTEEECCCEEEEEEECCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeeeCCCccchhHHHHHHHhCCCeeEecCcceEecCCccccCCeeeccCCCCCCCcHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeeccHHHHHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631 549 MTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 549 ~t~k~vK~~lpgP~ti~~~s~~~~y~~~~~~~~~diA~a~r~~ 591 (595)
+|++|+|+|||||+||+.|+++++|.+++ +++.|||.|||+.
T Consensus 580 ~t~~pvK~~L~gP~ti~~~s~~r~~~~~e-e~~~dlA~A~r~E 621 (789)
T 3ppg_A 580 ITSKPMKGMLTGPVTILRWSFPRDDVSGK-IQALQLGLALRDE 621 (789)
T ss_dssp TCSSCBEEEEECHHHHHHTSBCCSSSCHH-HHHHHHHHHHHHH
T ss_pred hccCCCceeccchHhHhhhhccccCCCHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999974
No 2
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=100.00 E-value=2.8e-149 Score=1264.19 Aligned_cols=557 Identities=40% Similarity=0.697 Sum_probs=523.8
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+||++||||||++||||+|+|+||+|++|+++|.++++++|.++|+.|++ |||+||+|||||||||||+++|||+||+|
T Consensus 34 ~~~~~g~prig~~relk~a~e~yw~g~~~~~~l~~~~~~lr~~~~~~q~~-g~~~i~~~dfs~yd~vld~~~~~g~~p~r 112 (766)
T 1t7l_A 34 KAYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEMNKLRMYMVENYRK-NVDVIPSNELSYYDFVLDTAVMVGAVPER 112 (766)
T ss_dssp EECCCCCCSSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH-HCSSCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred HhhccCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCeeccCCCcchhHHHhHHHHhCCCchh
Confidence 48899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSY 161 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T~ 161 (595)
|+.. .++++||+||||. +|+||||||||||||+|||++ ++.|++++++++++|++|+++|+++||||+||+||
T Consensus 113 ~~~~---~~l~~yf~~arg~---~a~em~kwf~tnyhy~vpe~~-~~~f~~~~~~~~~~~~ea~~~g~~~~pvl~gp~t~ 185 (766)
T 1t7l_A 113 FGEY---RGLSTYFDMARGG---KALEMTKFFNTNYHYLVPEIE-TEEFYLLENKPLEDYLFFKSKGIETAPWVIGPFTF 185 (766)
T ss_dssp GCSC---CSHHHHHHHHSST---TCCEEEECTTSSCEEEECBCC-CSCCCCSCCHHHHHHHHHHTTTCCCEEEEECHHHH
T ss_pred hccc---cchHHHHHHHcCC---cchhhhhhhcCCCCeEeeeec-CceeccCcchHHHHHHHHHhcCCCCeeEEEChHHH
Confidence 9742 2389999999994 899999999999999999999 89999999999999999999999999999999999
Q ss_pred hhhccCCCCc---CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcE
Q 007631 162 LLLSKPAKGV---EKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNV 238 (595)
Q Consensus 162 l~lsk~~~~y---~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i 238 (595)
|+|||. ++| ..+ +..+++++|+++|.++|++|+++||+|||||||+|++|++.++.+++..+|..|. .++|
T Consensus 186 l~l~k~-~~~~~~~~~-~~~~~l~~l~~~y~~~l~~l~~~g~~~vq~dep~l~~d~~~~~~~~~~~~y~~l~----~~~~ 259 (766)
T 1t7l_A 186 LYLSKR-NGEWIRRPN-QMEKLLESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRELS----EFPL 259 (766)
T ss_dssp HHTCEE-TTEECCSHH-HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEECGGGGSCCBHHHHHHHHHHHHTTT----TSCE
T ss_pred HHHhcc-CCccccccc-hHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCCeeecCCCHHHHHHHHHHHHHhc----CCcE
Confidence 999994 432 101 1238999999999999999999999999999999999999999999999999993 3699
Q ss_pred EEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhh-hCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhc
Q 007631 239 LIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV 317 (595)
Q Consensus 239 ~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~-~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~ 317 (595)
+|+||||+++ + ++.+.++ ||+|||+|+++++++++.+.+ +||++|.|++|||||||||++|+++++++|+.+.+
T Consensus 260 ~~~tyf~~~~-~-~~~~~~l-~v~~~~~d~v~~~~~~~~~~~~~~~~~~~l~~Gvvdgrniw~~d~~~~~~~~~~~~~-- 334 (766)
T 1t7l_A 260 TVFTYYDSVS-D-YEACVSL-PVKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQPWKVDLRKVASLVEKLGA-- 334 (766)
T ss_dssp EEECCSSCCS-C-HHHHHTS-SCSEEEEECSSCSHHHHHHHHHCCCTTSEEEEEEECSSCCBCCCHHHHHHHHHHHTC--
T ss_pred EEECCcCCHH-H-HHHHHcC-CCcEEEEEecCCHHHHHHHHhccCCCCceEEEEEecCcchhhcCHHHHHHHHHHhhe--
Confidence 9999999998 7 9999999 999999999999888999987 69999999999999999999999999999998753
Q ss_pred CCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCCCCHH
Q 007631 318 GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEA 397 (595)
Q Consensus 318 ~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (595)
|||+|||||+|||+|++.|++||+++|+|||||+|||.||+.|+++|++.. +.+ |.+++++|+ +|++
T Consensus 335 ----~~~~~s~sllh~p~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~--~~~--~~~~~~~~~-----~~~~ 401 (766)
T 1t7l_A 335 ----SAISNSCPLFHLPVTLELENNLPGGLKEKLAFAKEKLEELKMLKDFLEGKT--FDL--PNVSFEDFA-----VDLQ 401 (766)
T ss_dssp ----SEEEESSCGGGSCSCSTTCCSSSTTTGGGBCCHHHHHHHHHHHHHHHTTSC--CCC--CCCCCTTTT-----CCHH
T ss_pred ----EEEECCcCCeeccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--HHH--HHHHHHHhh-----cCHH
Confidence 999999999999999999999999999999999999999999999998642 222 555555555 8999
Q ss_pred HHhHHhhCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 007631 398 VQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKL 477 (595)
Q Consensus 398 v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~ 477 (595)
||+|+++|+++|++|.+||++|+++|+++|+||+||||||||||||++|+++|++|.+|+||.++|+++++++|+++|+.
T Consensus 402 v~~r~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~pTt~IGSfPrp~ELK~Are~y~~G~Is~eeL~~~~~~~i~~~V~~ 481 (766)
T 1t7l_A 402 AVERVRNLPEDSFRREKEYTERDRIQRERLNLPLFPTTTIGSFPQTPEVRKMRSKYRKGEISKEEYEAFIKEQIKKAIEL 481 (766)
T ss_dssp HHHHHHTCCGGGTSCSSCHHHHHHHHHHHHCCCSSCBCCCSCCCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHhhcccCCchHHHHHHHHHhcCCCCcceeeeCcCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceee
Q 007631 478 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGM 557 (595)
Q Consensus 478 Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~ 557 (595)
|+++|||+||||||+|.|||+||++.|+||.++.+||+++||++|+++|+|.|++++..||+++|++|+|+++.+|+|+|
T Consensus 482 QeeaGLDvItdGEFsR~D~Vldf~~~L~Gi~~~~~g~~~~~~~~~~~~pi~~G~i~ra~pMtlde~~~Aksl~~~pvK~~ 561 (766)
T 1t7l_A 482 QEEIGLDVLVHGEFERTDMVEFFAEKLNGIATTQNGWVLSYGSRCYRPPIIYGTVTRPEPMTLKEITYAQSLTEKPVKGM 561 (766)
T ss_dssp HHHHTCSSBCCCCTTCSSHHHHHHTTSEEEECCSSCCEEEETTEEECCCEEEEEEECCSCSSHHHHHHHHHTCSSCBEEE
T ss_pred HHHcCCCccCCCCcchhhHHHHHHHHhCCccccccccccccccccccCceeecCCccCCcChHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999998878999999999999999999999889999999999999999999999
Q ss_pred eccHHHHHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631 558 LTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 558 lpgP~ti~~~s~~~~y~~~~~~~~~diA~a~r~~ 591 (595)
||||+|++.|++.+.+.+++ +++.|||.||++.
T Consensus 562 LtGPvTlL~ls~~r~d~~r~-ell~dLA~ayree 594 (766)
T 1t7l_A 562 LTGPVTIMSWSYYREDIPER-EIAYQIALAINEE 594 (766)
T ss_dssp EECHHHHHHTSEECSSSCHH-HHHHHHHHHHHHH
T ss_pred EeCHHHHHHHhhccCCCCHH-HHHHHHHHHHHHH
Confidence 99999999999988888888 9999999999864
No 3
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=100.00 E-value=5.4e-146 Score=1259.38 Aligned_cols=587 Identities=83% Similarity=1.268 Sum_probs=540.5
Q ss_pred CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCC
Q 007631 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (595)
Q Consensus 1 ~~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (595)
|.||++||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||||||||||||||++++||+||+
T Consensus 1 ~~~~~~g~PR~g~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~aGld~i~~gdfs~yd~vld~~~~l~~ip~ 80 (765)
T 1u1j_A 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPP 80 (765)
T ss_dssp -CBBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCG
T ss_pred CCcceecCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCcccchHHHHHHHHhCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHH
Q 007631 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (595)
Q Consensus 81 rf~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T 160 (595)
||....+..++++||+|+||..++++++|||||||||||+|||+++++.|++.+++++++|++|+++|+++||+|+||+|
T Consensus 81 r~~~~~~~~~~~~yf~~arG~~~~~a~emtkwfdtNyhy~vPe~~~~~~~~~~~~~~l~~~~~ak~~g~~~K~~l~GP~T 160 (765)
T 1u1j_A 81 RYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVS 160 (765)
T ss_dssp GGCCCSSSCCHHHHHHHHHCCSSSCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHH
T ss_pred ceeccccCccHHHHHHHhCCCccccchhhheecccCcCceeeEEcCCcccccCCcchHHHHHHHHhcCCCceEEECCHHH
Confidence 99743222358999999999645789999999999999999999999999988899999999999999999999999999
Q ss_pred HhhhccCCCC-cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEE
Q 007631 161 YLLLSKPAKG-VEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVL 239 (595)
Q Consensus 161 ~l~lsk~~~~-y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~ 239 (595)
|+++++.... |+ .+++.+++++|+++|++++++|+++||+|||||||+|+.+++.++.++++.+|+.+.+..++.+++
T Consensus 161 ll~l~k~~~~~~~-~~~~~~ll~~L~~~y~~~l~~L~~aG~~~VQiDEP~L~~~l~~~~~~~~~~a~~~l~~~~~~~~i~ 239 (765)
T 1u1j_A 161 YLLLSKAAKGVDK-SFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVL 239 (765)
T ss_dssp HHHTCEECTTCCT-TCCGGGGHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSCCCHHHHHHHHHHHHHSTTTTCSSEEE
T ss_pred HHHhhhcccccCc-cCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCccccCCCHHHHHHHHHHHHHHHhhcCCCeEE
Confidence 9999873222 31 146889999999999999999999999999999999999998888999999999996432247899
Q ss_pred EEeccCCCC-cccHHHHhcCCC-ccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhc
Q 007631 240 IETYFADVP-AETYKILTSLKG-VTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV 317 (595)
Q Consensus 240 l~tyfg~~~-~~v~~~l~~l~p-vd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~ 317 (595)
||||||++. ++ ++.|.++ | ||+||||+++++++++.+...+|++|.|++|||||||+|++|+++++++|+++.+.+
T Consensus 240 lhtc~G~~~~~~-~~~l~~l-~~vd~l~lD~v~~~~~l~~l~~~l~~~k~L~lGvVdgrni~~~d~e~v~~~l~~~~~~l 317 (765)
T 1u1j_A 240 VETYFADIPAEA-YKTLTSL-KGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIV 317 (765)
T ss_dssp EECCSSCCCHHH-HHHHTTC-TTCCEEEEESSSCTTHHHHHHHCCCSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHC
T ss_pred EEeCCCCcchHH-HHHHHcC-CCCcEEEEEecCCcccHHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHHhc
Confidence 999999999 87 9999999 9 999999999977889988866888999999999999999999999999999999999
Q ss_pred CCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCCCCHH
Q 007631 318 GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEA 397 (595)
Q Consensus 318 ~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (595)
|.+||||||||||+|||+|+..|+.|++++++|||||.|||+||+.|++++.++...+.+.+|.+++++|+.|+++||++
T Consensus 318 g~~~l~lspsCgL~hvP~~~~~e~~l~~~~~~~~~fa~~Kl~el~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (765)
T 1u1j_A 318 GKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTNEG 397 (765)
T ss_dssp CSSCEEEEESSCGGGSCSCGGGCCSSCHHHHTTBCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCTTTSCTH
T ss_pred CCCcEEEcCCCCccCCccccccccCCCHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCcccCCHH
Confidence 98999999999999999999999999999999999999999999999999986433667899999999999999999999
Q ss_pred HHhHHhhCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 007631 398 VQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKL 477 (595)
Q Consensus 398 v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~ 477 (595)
||+|+++|+++|++|.+||++|+++|+++|+|||||||||||||||++|+++|++|++|+|+.++|+++++++|+++|+.
T Consensus 398 v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~l~~~~tt~vGSfprp~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~ 477 (765)
T 1u1j_A 398 VQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDL 477 (765)
T ss_dssp HHHTTTTTSSCCCCCSSCGGGTHHHHHHHSCCCSSCBBCCSBCCCCSCCC-------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCChhhcccCCchHHHHHHHHHhcCCCCCccCccCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceee
Q 007631 478 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGM 557 (595)
Q Consensus 478 Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~ 557 (595)
|+++||||||||||+|+|||+||+++|+||+++.+||+|+||++|+++|+|+|+|+++.|++++|++|+|+++++|||+|
T Consensus 478 Q~~~GldvvtdGE~~R~~~~~~f~~~l~G~~~~~~g~~~~~~~~~~~~p~i~g~i~~~~p~~ve~~~~l~~~~~~pvK~~ 557 (765)
T 1u1j_A 478 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGM 557 (765)
T ss_dssp HHSSCCSBBCCBCTTCSCTTHHHHTTSTTEECCSSCCEEEETTEEECCCEECSCCCCCSCSSTHHHHHHTTSCSSCBEEE
T ss_pred HHHhCCCeeecchhccccHHHHHHHHhCCCccccCCcccccccccCcCCeeecCcCCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631 558 LTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 558 lpgP~ti~~~s~~~~y~~~~~~~~~diA~a~r~~ 591 (595)
||||+||+.|++.+.|.+++ +++.|||+||++.
T Consensus 558 l~GP~Tl~~~~~~r~~~~~~-~l~~~lA~a~~~e 590 (765)
T 1u1j_A 558 LTGPVTILNWSFVRNDQPRH-ETCYQIALAIKDE 590 (765)
T ss_dssp EECHHHHHHTSEECTTSCHH-HHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHhccCcCcHH-HHHHHHHHHHHHH
Confidence 99999999999999899999 9999999999864
No 4
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=100.00 E-value=6.4e-144 Score=1238.45 Aligned_cols=569 Identities=41% Similarity=0.709 Sum_probs=519.6
Q ss_pred CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCC
Q 007631 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (595)
Q Consensus 1 ~~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (595)
+++|++||||||++||||+|+|+||+|+||+++|+++++++|+.+|+.|+++|||+||+|||||||||||+++|||+||+
T Consensus 4 ~~~~~lgyPRig~~relk~a~e~yw~g~i~~~~L~~~~~~~r~~~~~~q~~aGid~i~~gdfs~yD~vl~~~~~~~~~p~ 83 (755)
T 2nq5_A 4 TKVSSLGYPRLGENREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLNAGLDLIPVGDFSLYDHILDLSVQFNIIPK 83 (755)
T ss_dssp CEEBCSCCCSSCTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHTTCSBEEESCCCSSCHHHHHHHHTTCCCG
T ss_pred cccceecCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCccchHHHHHHHHHhCCCch
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccchhhhhhcCC-CCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHH-HcCCCCceEeehH
Q 007631 81 RYSWNGGEIGFDVYFSMARGN-ASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAK-ALGMETVPVLVGP 158 (595)
Q Consensus 81 rf~~~~~~~~l~~yFa~aRG~-~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~-~~g~~~K~vl~GP 158 (595)
||+.. ..+|++||+||||. .++ +++|||||||||||+|||+++ ++|++..++++++|++|+ ++|+++||+|+||
T Consensus 84 r~~~~--~~~l~~yFa~aRG~~~~~-a~emtkwfdtNyhY~vPe~~~-~~~~~~~~~~l~~~~eA~~~~g~~vK~vl~GP 159 (755)
T 2nq5_A 84 RFAKE--PIDIDLYFAIARGNKENV-ASSMKKWFNTNYHYIVPEWSK-QRPKLNNNRLLDLYLEAREVVGDKAKPVITGP 159 (755)
T ss_dssp GGTTS--CSSHHHHHHHHHCCSSSC-CCCEEECTTSSCEEECCBCCS-CCCCCCCCHHHHHHHHHHHHHGGGEEEEEECH
T ss_pred hhccc--cccHHHHHHHHhCCCCCC-cccceeeccCCCceeeeeeeC-ceeeecCchHHHHHHHHHHhcCCCcEEEEccH
Confidence 99743 24699999999996 455 899999999999999999999 899999999999999999 7799999999999
Q ss_pred HHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcE
Q 007631 159 VSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNV 238 (595)
Q Consensus 159 ~T~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i 238 (595)
+||+++++. . + ...+++++|+++|++++++|.++||+|||||||+|+.++++++.+++..+|+.|.....+.++
T Consensus 160 ~Tla~l~k~-~----~-~~~dll~~L~~~y~~~l~~L~~~Ga~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~v 233 (755)
T 2nq5_A 160 ITYVALSTG-V----E-DFTAAVKSLLPLYKQVFTELVKAGASYIQVDEPIFVTDEGKDYLQAAKAVYAYFAKEVPDAKF 233 (755)
T ss_dssp HHHHHTCBS-C----S-CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSSGGGGGHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHhcC-C----c-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccCCCCHHHHHHHHHHHHHHHhcccCCcE
Confidence 999999984 2 1 355999999999999999999999999999999999999888999999999999631113589
Q ss_pred EEEeccCCCCcccHHHHhcCCCccEEEEEeecCC-CChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhc
Q 007631 239 LIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV 317 (595)
Q Consensus 239 ~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~-~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~ 317 (595)
+|+||||+++ + ++.|.++ |||+||+|+++++ ++++.+.+.+|.+|.|++|||||||+|++|+++++++++++.+.
T Consensus 234 ~lhtyfG~~~-~-~~~l~~l-~vd~l~lD~v~~~~~~l~~l~~~~~~~k~L~~GvVdgrniw~~d~e~v~~~l~~~~~~- 309 (755)
T 2nq5_A 234 IFQTYFEGLI-D-SQVLSQL-PVDAFGLDFVYGLEENLEAIKTGAFKGKEIFAGVIDGRNIWSSDFVKTSALLETIEEQ- 309 (755)
T ss_dssp EEECCSSCCT-T-HHHHTTS-SCSEEEEESSSSHHHHHHHHHTTTTTTSEEEEEEECTTSCBCCCHHHHHHHHHHHHHT-
T ss_pred EEEEeCCChH-H-HHHHHhC-CCCEEEEEecCCChhhHHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHhh-
Confidence 9999999987 6 9999999 9999999999877 68888887688899999999999999999999999999999876
Q ss_pred CCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCCCCHH
Q 007631 318 GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEA 397 (595)
Q Consensus 318 ~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (595)
.+++||+|||||+|+|++++.|++||+++|+|||||+|||.||+.|+++|++.. .+.+.+|.+++++|+.|++ ||+
T Consensus 310 -~~~l~vsPsCsL~h~P~~l~~e~~~~~~~~~~~~fa~~k~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~- 385 (755)
T 2nq5_A 310 -SAALTIQPSCSLLHVPVTTKNETDLDPVLRNGLAFADEKLTEVKRLAEHLDGRE-DPAYDLHIAHFDALQAADF-RNV- 385 (755)
T ss_dssp -SSEEEEEESSCGGGSCSCSTTCTTSCHHHHTTBCCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTCGG-GSC-
T ss_pred -cCCEEEcCCCCcCCCCHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHhccCcc-cCH-
Confidence 589999999999999999999999999999999999999999999999998643 4668999999999999999 887
Q ss_pred HHhHHhhCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 007631 398 VQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKL 477 (595)
Q Consensus 398 v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~ 477 (595)
|+++|++++++|.+||++|+++|+++|+|||||||||||||||++|+++|++|++|+|+.++|+++++++|+++|++
T Consensus 386 ---~~~~~~~~~~~r~~~~~~r~~~q~~~~~l~~~~tt~VGSfprp~~l~~ar~~~~~g~i~~~~l~~~~~~~i~~~V~~ 462 (755)
T 2nq5_A 386 ---KLEDLSRVATKRPSDFAKRRDIQQEKLHLPLLPTTTIGSFPQSREIRRTRLAWKRGDISDAEYKQFIQAEIERWIRI 462 (755)
T ss_dssp ---CCCCGGGSCSSCSSCHHHHHHHHHHHHCCCSSCBBCCSBCCC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhCChhhcccCCchHHHHHHHHHhcCCCCcceeeeCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceee
Q 007631 478 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGM 557 (595)
Q Consensus 478 Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~ 557 (595)
|+++||||||||||+|+|||+||+++|+||+++.+||+|+||++|+++|+|+|+|+++.|++++|++|+|+++++|||+|
T Consensus 463 Q~~~GldvvtdGE~~R~d~v~~F~~~l~G~~~~~~g~~~~~~~~~~~~p~i~G~i~~~~p~~ve~~~~l~~~t~~pvK~~ 542 (755)
T 2nq5_A 463 QEDLDLDVLVHGEFERVDMVEFFGQKLAGFTTTKFGWVQSYGSRAVKPPIIYGDVQHLEPITVEETVYAQSLTDRPVKGM 542 (755)
T ss_dssp HHHHTCSBBCCBCTTCSCTTHHHHTTEEEEECCSSCCEEEETTEEECCCEEEEEEEECSCSSHHHHHHHHHTCSSCBEEE
T ss_pred HHHcCCCcccccccccccHHHHHHHhCCCcccccCCccccccccCCCCCEecCCccCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631 558 LTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIF 591 (595)
Q Consensus 558 lpgP~ti~~~s~~~~y~~~~~~~~~diA~a~r~~ 591 (595)
||||+||+.|++.+.|.+++ +++.|||+||++.
T Consensus 543 l~GP~Tl~~~~~~r~~~~~~-el~~~lA~a~~~e 575 (755)
T 2nq5_A 543 LTGPITITNWSFERTDIPRD-QLFNQIGLAIKDE 575 (755)
T ss_dssp EECHHHHHHHSBCCSSSCHH-HHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHhccCcccHH-HHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999864
No 5
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=100.00 E-value=8e-57 Score=509.57 Aligned_cols=317 Identities=15% Similarity=0.158 Sum_probs=261.2
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||+||||+ .|||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||||||||||+|+|++.+|++||.|
T Consensus 438 Tt~IGSfPrp---~ELK~Are~y~~G~Is~eeL~~~~~~~i~~~V~~QeeaGLDvItdGEFsR~D~Vldf~~~L~Gi~~~ 514 (766)
T 1t7l_A 438 TTTIGSFPQT---PEVRKMRSKYRKGEISKEEYEAFIKEQIKKAIELQEEIGLDVLVHGEFERTDMVEFFAEKLNGIATT 514 (766)
T ss_dssp BCCCSCCCCC---HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSSBCCCCTTCSSHHHHHHTTSEEEECC
T ss_pred eeeeCcCCCC---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcchhhHHHHHHHHhCCcccc
Confidence 5788899999 9999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCC-CCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGM-ETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~-~~K~vl~GP~T 160 (595)
+..-....+.+.|| .|.+.|+. ....+..++++++|++++. ++|++|+||+|
T Consensus 515 ~~g~~~~~~~~~~~-------------------------~pi~~G~i--~ra~pMtlde~~~Aksl~~~pvK~~LtGPvT 567 (766)
T 1t7l_A 515 QNGWVLSYGSRCYR-------------------------PPIIYGTV--TRPEPMTLKEITYAQSLTEKPVKGMLTGPVT 567 (766)
T ss_dssp SSCCEEEETTEEEC-------------------------CCEEEEEE--ECCSCSSHHHHHHHHHTCSSCBEEEEECHHH
T ss_pred cccccccccccccc-------------------------CceeecCC--ccCCcChHHHHHHHHHhcCCCeEEEEeCHHH
Confidence 63100000112233 34444432 2223446899999999964 59999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChH---HHHHHHHHHHHHHc--CC-C
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH---KLQAFSDAYSELQS--SL-S 234 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~---~~~~~~~ay~~l~~--~~-~ 234 (595)
|+.+++..++ .++.+++++|+++|++++++|+++||+|||||||+|+.+++.. +.+.+..+|..+.. +. .
T Consensus 568 lL~ls~~r~d----~~r~ell~dLA~ayreeI~~L~~AGa~~IQIDEPaL~~~L~~~~~d~~~~l~~a~~aln~a~gv~~ 643 (766)
T 1t7l_A 568 IMSWSYYRED----IPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLAANARP 643 (766)
T ss_dssp HHHTSEECSS----SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTHHHHTSCSSGGGHHHHHHHHHHHHHHHTCCCT
T ss_pred HHHHhhccCC----CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcccccCCCcchhHHHHHHHHHHHHHHhhcCCC
Confidence 9998874332 4789999999999999999999999999999999999877532 56677777766642 22 2
Q ss_pred CCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCC-CcEEEEeEeeCCCCCCCCHHHHHHHHHHH
Q 007631 235 GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPL-GKYLFAGVVDGRNIWANDLASSLTTLQDL 313 (595)
Q Consensus 235 ~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~-~k~l~lGVVdgrn~w~ed~~~~~~~i~~~ 313 (595)
..+|++|+|||+++++ ++.|.++ +||+|+||++++..++..+...+|. +|.|++||||+||+|++|+++++++|+++
T Consensus 644 ~~~I~lH~C~G~~~di-~~~L~~l-~VD~IsLE~~Rs~~elL~~l~~~p~~~k~L~lGVVD~rn~~ved~EeI~~rI~~a 721 (766)
T 1t7l_A 644 ETQIHAHMCYSDFNEI-IEYIHQL-EFDVISIEASRSKGEIISAFENFKGWIKQIGVGVWDIHSPAVPSINEMREIVERV 721 (766)
T ss_dssp TSEEEEECCCSCCTTT-HHHHTTS-CCSEEEEECTTTTTGGGHHHHTSTTCCSEEEEECSCTTSCSCCCHHHHHHHHHHH
T ss_pred CceEEEEEecCchHHH-HHHHHcC-CCCEEEEecCCCchhHHHHHHhccccCCeEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 4689999999999987 9999999 9999999988764333222222432 48999999999999999999999999999
Q ss_pred HhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHH
Q 007631 314 AGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVV 359 (595)
Q Consensus 314 ~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~ 359 (595)
.+++|.+||||||||||+|+|++ .+.+.|++|++||+|==+
T Consensus 722 ~~~Vg~erL~VsPdCGL~~~p~~-----e~~~kLk~mvaaAkevr~ 762 (766)
T 1t7l_A 722 LRVLPKELIWINPDCGLKTRNWD-----EVIPSLRNMVALAKEMRE 762 (766)
T ss_dssp TTTSCGGGEEEECSSCCTTSCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccEEEeCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 367899999999986433
No 6
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=100.00 E-value=1.5e-50 Score=428.66 Aligned_cols=312 Identities=18% Similarity=0.144 Sum_probs=262.5
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||+||||+ .+||+|+++|++|+||.++|.++.++.+++.++.|+++|||+||||||+|.|+|.++...++++-
T Consensus 20 tt~vGSfprp---~~l~~ar~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~-- 94 (357)
T 3rpd_A 20 TSTAGSLPKP---LWLAEPETLWSPWKLQGEELITGKHDALRLSLQDQQLAGIDIVSDGEQTRQHFVTTFIEHLNGVD-- 94 (357)
T ss_dssp CCCSSCCCCC---TTTBCTTCSSCCBSCCHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTTTTCSCTTHHHHHTSEEEE--
T ss_pred cceeccCCCC---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCcchhhHHHHHHHhCCCee--
Confidence 5788889999 89999999999999999999999999999999999999999999999999999999887665541
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
|. .. +-. |+.+||+|.+|.+.|+..+ ..+.+++++++++++ +.++|.+||||+|
T Consensus 95 ~~--------------~~--------~~v-~~~~~~~~~~p~i~G~v~~--~~~~~v~~~~~~~~~t~~~vK~~lpgP~t 149 (357)
T 3rpd_A 95 FS--------------KR--------KIV-KIRDRYDASVPTVVGPVSR--QKSVFVEDAKFLRKQTTQPIKWALPGPMT 149 (357)
T ss_dssp EE--------------EE--------EEE-EETTTEEEEEEEEEEEEEC--CSCSSHHHHHHHHHHCSSCBEEEEECHHH
T ss_pred ec--------------cC--------ccc-cccCCceeeCCEEEccCCC--CCCCcHHHHHHHHhhccCCceEEeCCHHH
Confidence 00 01 111 2338889999999997554 567889999999988 7899999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEE
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l 240 (595)
++.++.+ .+| .++++++.+|+.+|++++++|+++||++||||||+|.... .+..+...++++....+.+ ..+.+
T Consensus 150 ~~~~~~~-~~y---~~~~e~~~dlA~a~~~ei~~l~~aG~~~IQiDeP~l~~~~-~~~~~~~v~~~n~~~~~~~-~~~~i 223 (357)
T 3rpd_A 150 MIDTLYD-DHY---KSREKLAWEFAKILNEEAKELEAAGVDIIQFDEPAFNVFF-DEVNDWGIACLERAIEGLK-CETAV 223 (357)
T ss_dssp HHTSSEE-SSS---CCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGTCH-HHHHHTHHHHHHHHHTTCC-SEEEE
T ss_pred HHHHhhh-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCccccccH-HHHHHHHHHHHHHHHhCCC-CceEE
Confidence 9988764 555 5889999999999999999999999999999999998642 2333555667776666554 57778
Q ss_pred EeccC------------------CCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCC
Q 007631 241 ETYFA------------------DVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWAND 302 (595)
Q Consensus 241 ~tyfg------------------~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed 302 (595)
|+||| +++++ ++.|.++ ++|+|+||+++...+++.+. ++.+|.|++||||++++++++
T Consensus 224 HiC~G~~~~~n~d~~~t~~~~~g~y~~i-~~~l~~~-~~D~i~lE~~~~r~~~e~l~--~~~~k~v~lGvvd~~s~~ve~ 299 (357)
T 3rpd_A 224 HICYGYGIKANTDWKKTLGSEWRQYEEV-FPKLQKS-NIDIISLECHNSHVPMELLE--LIRGKKVMVGAIDVATDTIET 299 (357)
T ss_dssp EECSCCSSHHHHHHHTTSCSCCCGGGGT-HHHHHHS-SCCEEEECCTTCCCCGGGGG--GGTTSEEEEECSCTTCSSCCC
T ss_pred EEecCCccCCccccccccccccCcHHHH-HHHHHhC-CCCEEEEEecCCCCChHHHH--hcCCCEEEeccccCcCCCCCC
Confidence 99986 24555 9999999 99999999998655677654 346899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 303 LASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 303 ~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
+++++++|+++.+++|.++|||||||||..+|.+ -|.+||.-|+..++.++
T Consensus 300 ~eev~~ri~~a~~~v~~~~l~lsPdCGl~~~~~~----------------~a~~kL~~mv~aa~~~r 350 (357)
T 3rpd_A 300 AEEVADTLRKALKFVDADKLYPCTNCGMTPLSHQ----------------VTRGKLNALSAGAEIVR 350 (357)
T ss_dssp HHHHHHHHHHHHTTSCGGGEEEECSSCCTTSCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccEEEeCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976543 47889998888887664
No 7
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-49 Score=422.21 Aligned_cols=324 Identities=16% Similarity=0.195 Sum_probs=253.0
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||+||||+ ++||+|+++|++|+||.++|+++.++.+++.++.|+++|||+||||||+|+|+|+|+...|+++. +
T Consensus 9 tt~vGSfprp---~~l~~ar~~~~~g~i~~~~l~~~~~~~i~~~v~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~-~ 84 (375)
T 1ypx_A 9 ADHVGSILRT---KGIKDAREKFQSGEITALELRKIENTEIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDGVE-G 84 (375)
T ss_dssp BCCCSCCCCC---HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHTCSEECCTTTTC--CCHHHHTTSEEEE-E
T ss_pred cceeCcCCCC---HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcchhhHHHHHHHHCCCee-e
Confidence 5788889999 99999999999999999999999999999999999999999999999999999999988777652 1
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCce-eecceecCCCccccCCcccHHHHHHHHHc-CC-C-CceEeeh
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYH-YIVPELGPDVNFSYASHKAVQEYKEAKAL-GM-E-TVPVLVG 157 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyh-Y~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~-~-~K~vl~G 157 (595)
|. ..++.+ |..+++ |..|.+.++..+. ++++++++++++++ +. + +|.+|||
T Consensus 85 ~~----------------------~~~~~~-f~~~~~~~~~p~i~g~i~~~--~~p~~~~~~~l~~~~~~~~~vK~~l~g 139 (375)
T 1ypx_A 85 YD----------------------AAGGIQ-FSKVQTKSHSVKITGPIDFT--THPFIEDFIFLKEAVGDNHVAKQTIPS 139 (375)
T ss_dssp C---------------------------------------CEEEEEEEECS--CCTHHHHHHHHHHHHCSSSEECEEEEC
T ss_pred ec----------------------CCCcee-ecCCCCCccCceecCCCCCC--CCchHHHHHHHHHHhcCCCceEEecCC
Confidence 11 112344 444444 8999999976664 35599999999987 33 5 6999999
Q ss_pred HHHHhhhccCC-CCcCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC--------------hHHHHH
Q 007631 158 PVSYLLLSKPA-KGVEKSFSL-LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD--------------SHKLQA 221 (595)
Q Consensus 158 P~T~l~lsk~~-~~y~~~~d~-~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~--------------~~~~~~ 221 (595)
|+|++.++... +.| .+. .+++++|+.+|++++++|+++||++||||||+|...++ .+..+.
T Consensus 140 P~tl~~~~~~~~~~Y---~~~~~~l~~~la~a~~~ei~~l~~aG~~~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T 1ypx_A 140 PAMLHYRGDIEYQPY---LDDAEKFANDLATAYQKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPETLQET 216 (375)
T ss_dssp THHHHHHEEECSHHH---HHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECHHHHTTSCC--------CCSTTTHHHH
T ss_pred HHHHHHHHhcchhhc---cChHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCCchhhhhccchhcccccccCCHHHHHHH
Confidence 99999776422 334 256 89999999999999999999999999999999985431 123466
Q ss_pred HHHHHHHHHcCCC-CCcEEEEeccC----------CCCcccHHHHh-cCCCccEEEEEeecCC-CChhhHhhhCCC-CcE
Q 007631 222 FSDAYSELQSSLS-GLNVLIETYFA----------DVPAETYKILT-SLKGVTGFGFDLIRGT-KTLDLIKTEFPL-GKY 287 (595)
Q Consensus 222 ~~~ay~~l~~~~~-~~~i~l~tyfg----------~~~~~v~~~l~-~l~pvd~i~lD~~~~~-~~l~~l~~~~p~-~k~ 287 (595)
+.++++.+..+.+ +..|++|+|+| ++.++ ++.|. ++ ++|+|+||+++.+ ++++.|.. ++. +|.
T Consensus 217 ~v~~~n~~~~~~~~~~~i~~HiC~gn~~s~~~~~g~~~~i-~~~l~~~~-~~d~i~lE~~~~r~g~~e~L~~-~~~~~~~ 293 (375)
T 1ypx_A 217 YKNLINEAIKHKPADMVITMHICRGNFRSTWIAEGGYGPV-AETLFGKL-NIDGFFLEYDNERSGDFAPLKY-VTRPDLK 293 (375)
T ss_dssp HHHHHHHHTTTCCTTCEEEEEECCC----------CCSGG-GHHHHTTC-CCSEEEEECCSCC---CCTTCC-CCCTTCE
T ss_pred HHHHHHHHHhcCCCCCeEEEEEeccccCCccccccchHHH-HHHHHhhC-CCCEEEEEecCCCCCcHHHHHH-hhhcCCe
Confidence 6777777766554 47899999998 56666 99998 99 9999999999854 48888875 765 789
Q ss_pred EEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHH
Q 007631 288 LFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (595)
Q Consensus 288 l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~ 367 (595)
|++||||++++++|++++++++|+++.+++|.+||||||||||.++--. ..++++ -|.+||.-|+..|+.
T Consensus 294 v~lGvvd~~~~~~e~~e~v~~ri~~a~~~v~~e~l~lsPdCGl~s~~~g----~~~t~~------~a~~kL~~~v~~A~~ 363 (375)
T 1ypx_A 294 IVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQCGFASTEEG----NILTEE------EQWDKLRYVVRLAND 363 (375)
T ss_dssp EEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEEEEESSCCC------------CHH------HHHHHHHHHHHHHHH
T ss_pred EEEeeecCcCCCCCCHHHHHHHHHHHHHhcCccceEecCCCCccccccC----CCCCHH------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999832211 012221 488999999999888
Q ss_pred hcC
Q 007631 368 LSG 370 (595)
Q Consensus 368 l~~ 370 (595)
+.+
T Consensus 364 ~~~ 366 (375)
T 1ypx_A 364 IWG 366 (375)
T ss_dssp HSC
T ss_pred HHh
Confidence 764
No 8
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A
Probab=100.00 E-value=2.3e-43 Score=401.30 Aligned_cols=312 Identities=16% Similarity=0.215 Sum_probs=238.2
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||++|||+ .+|++|+++|.+|+||.++|+++.++.+++.++.|+++|||+||||||+|.|+|.++...++++-
T Consensus 465 tt~VGSfPRp---~~L~~aR~~~~~G~is~~el~~~~~~aI~~vV~~Qe~~GLdvvtDGE~~R~d~v~~F~e~L~G~~-- 539 (789)
T 3ppg_A 465 TTTIGSFPQT---KDIRINRNKFAKGQITAEEYEAFINKEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFA-- 539 (789)
T ss_dssp BBCCSCCCCC---HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSBBCCCCTTCSCTTHHHHTTSEEEE--
T ss_pred eccccCcCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCccchhHHHHHHHhCCCee--
Confidence 5788899999 99999999999999999999999999999999999999999999999999999988876665541
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
| . ..+..++++++| |..|.+.|+..+ ..+..+++|++++++ +.++|.+||||+|
T Consensus 540 ~---------------~-------~~g~vq~~g~r~-~~~p~i~G~V~~--~~p~~v~~~~~~qs~t~~pvK~~L~gP~t 594 (789)
T 3ppg_A 540 F---------------T-------TNGWVQSYGSRY-VRPPIIVGDVSR--PKAMTVKESVYAQSITSKPMKGMLTGPVT 594 (789)
T ss_dssp C---------------C-------SSCCEEEETTEE-ECCCEEEEEEEC--CSCSSHHHHHHHHHTCSSCBEEEEECHHH
T ss_pred E---------------e-------cCcceEecCCcc-ccCCeeeccCCC--CCCCcHHHHHHHHhhccCCCceeccchHh
Confidence 1 0 012245566643 677889887543 333349999999998 5789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCCh---HH----HHHHHHHHHHHHcCC
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS---HK----LQAFSDAYSELQSSL 233 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~---~~----~~~~~~ay~~l~~~~ 233 (595)
++.++.+ ..| .++.+++.+|+.+|++++++|+++||++||||||+|...++. .+ .+...++++....+.
T Consensus 595 i~~~s~~-r~~---~~~ee~~~dlA~A~r~Ei~~L~~AG~r~IQiDEPal~e~l~~r~g~d~~~~l~~av~a~n~a~~g~ 670 (789)
T 3ppg_A 595 ILRWSFP-RDD---VSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGV 670 (789)
T ss_dssp HHHTSBC-CSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTGGGSCSSSSHHHHHHHHHHHHHHHHHHSSS
T ss_pred Hhhhhcc-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhcccccccCCHHHHHHHHHHHHHHHHhcC
Confidence 9988765 333 478999999999999999999999999999999999764431 22 334555555555554
Q ss_pred C-CCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCC-CCcEEEEeEeeCCCCCCCCHHHHHHHHH
Q 007631 234 S-GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFP-LGKYLFAGVVDGRNIWANDLASSLTTLQ 311 (595)
Q Consensus 234 ~-~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p-~~k~l~lGVVdgrn~w~ed~~~~~~~i~ 311 (595)
+ .+.|++|.|+|++.. +.|.++ ++|+|+||| ..+.++++|.. |+ .++.|++||||++++.+|++++++++|+
T Consensus 671 p~d~~I~tHiC~Gnf~~---~~I~~l-~aD~islE~-~~Rs~~e~L~~-~~~~~k~V~lGVvds~sp~vEs~EeV~~rI~ 744 (789)
T 3ppg_A 671 ENSTQIHSHFCYSDLDP---NHIKAL-DADVVSIEF-SKKDDPNYIQE-FSEYPNHIGLGLFDIHSPRIPSKQEFVSRIE 744 (789)
T ss_dssp CTTSEEEEECC---CCH---HHHHHH-CCSEEEEC----------CGG-GGGCCSEEEEC-------CCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCCCh---hHHHhC-CCCEEEEec-CCCcchHHHHH-HHhcCCeEEeeeecCCCCCCCCHHHHHHHHH
Confidence 3 368999999999874 788899 999999998 43334565553 44 3689999999999999999999999999
Q ss_pred HHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 312 DLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 312 ~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
++.+++|+++|||||||||...+++ -|.+||.-|+..++.++
T Consensus 745 ~a~~~v~~erL~lsPdCGl~t~~~~----------------~a~akL~~mveaAk~lR 786 (789)
T 3ppg_A 745 EILKVYPASKFWVNPDCGLKTRGWP----------------EVKESLTNMVEAAKEFR 786 (789)
T ss_dssp HHTTTSCGGGEEECCSCC---CCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccEEEeCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999866443 48899999988887764
No 9
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=100.00 E-value=3.5e-45 Score=387.54 Aligned_cols=171 Identities=24% Similarity=0.334 Sum_probs=158.9
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhH
Q 007631 419 RLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVE 498 (595)
Q Consensus 419 r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~ 498 (595)
..++|+++||||+||||||||||||+||+++|++|++|+||.++|+++++++|+++|+.|+++||||||||||+|+|||+
T Consensus 5 ~~~~~~~~~~~~~~ptt~vGSfprp~~l~~ar~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~~GldvvtdGE~~R~d~~~ 84 (357)
T 3rpd_A 5 KTRLNKTSLNQALLPTSTAGSLPKPLWLAEPETLWSPWKLQGEELITGKHDALRLSLQDQQLAGIDIVSDGEQTRQHFVT 84 (357)
T ss_dssp --------CCCCSSCCCCSSCCCCCTTTBCTTCSSCCBSCCHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTTTTCSCTTH
T ss_pred HHHHHHHhcCCCCcccceeccCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCcchhhHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCceeeecceeeecCCcc-cCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceeeeccHHHHHhhhcCCCCCCCh
Q 007631 499 YFGEQLSGFAFTVNGWVQSYGSRC-VKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQ 577 (595)
Q Consensus 499 yF~e~l~G~~~~~~g~v~~yg~~~-~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~lpgP~ti~~~s~~~~y~~~~ 577 (595)
||+++|+||+++.+||+++| ++| +++|+|+|+|++++|++++|++|+|++|++|+|+|||||+||+.|+++++|.+++
T Consensus 85 ~f~~~l~G~~~~~~~~v~~~-~~~~~~~p~i~G~v~~~~~~~v~~~~~~~~~t~~~vK~~lpgP~t~~~~~~~~~y~~~~ 163 (357)
T 3rpd_A 85 TFIEHLNGVDFSKRKIVKIR-DRYDASVPTVVGPVSRQKSVFVEDAKFLRKQTTQPIKWALPGPMTMIDTLYDDHYKSRE 163 (357)
T ss_dssp HHHHTSEEEEEEEEEEEEET-TTEEEEEEEEEEEEECCSCSSHHHHHHHHHHCSSCBEEEEECHHHHHTSSEESSSCCHH
T ss_pred HHHHhCCCeeeccCcccccc-CCceeeCCEEEccCCCCCCCcHHHHHHHHhhccCCceEEeCCHHHHHHHhhhccCCCHH
Confidence 99999999999999999999 776 6899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhh
Q 007631 578 GINQIQCPVNLRIF 591 (595)
Q Consensus 578 ~~~~~diA~a~r~~ 591 (595)
+++.|||.||++.
T Consensus 164 -e~~~dlA~a~~~e 176 (357)
T 3rpd_A 164 -KLAWEFAKILNEE 176 (357)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 9999999999874
No 10
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=100.00 E-value=1.1e-40 Score=382.87 Aligned_cols=313 Identities=16% Similarity=0.150 Sum_probs=233.9
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||++|||+ .+|++|+++|.+|+|+.++|+++.++.+++.++.|+++|||+||||||+|.|+|.++...|+++-
T Consensus 419 tt~VGSfprp---~~l~~ar~~~~~g~i~~~~l~~~~~~~i~~~V~~Q~~~GldvvtdGE~~R~d~v~~F~~~l~G~~-- 493 (755)
T 2nq5_A 419 TTTIGSFPQS---REIRRTRLAWKRGDISDAEYKQFIQAEIERWIRIQEDLDLDVLVHGEFERVDMVEFFGQKLAGFT-- 493 (755)
T ss_dssp BBCCSBCCC--------------------CHHHHHHHHHHHHHHHHHHHHHTCSBBCCBCTTCSCTTHHHHTTEEEEE--
T ss_pred eeeeCCCCCC---HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccHHHHHHHhCCCcc--
Confidence 5788889999 99999999999999999999999999999999999999999999999999999999887666541
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
|. ..+..+.++++| +..|.+.|+..+ ..+..++++++++++ +.++|.+|+||+|
T Consensus 494 ~~----------------------~~g~~~~~~~~~-~~~p~i~G~i~~--~~p~~ve~~~~l~~~t~~pvK~~l~GP~T 548 (755)
T 2nq5_A 494 TT----------------------KFGWVQSYGSRA-VKPPIIYGDVQH--LEPITVEETVYAQSLTDRPVKGMLTGPIT 548 (755)
T ss_dssp CC----------------------SSCCEEEETTEE-ECCCEEEEEEEE--CSCSSHHHHHHHHHTCSSCBEEEEECHHH
T ss_pred cc----------------------cCCccccccccC-CCCCEecCCccC--CCCCHHHHHHHHHHhcCCCeEEEecCHHH
Confidence 11 012335566654 688999887654 456799999999988 5789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC--h----HHHHHHHHHHHHHHcCCC
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD--S----HKLQAFSDAYSELQSSLS 234 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~--~----~~~~~~~~ay~~l~~~~~ 234 (595)
++.++... .+ .+..+++++|+.+|++++++|+++||++||||||.|...++ . +..+....+++.+..+.+
T Consensus 549 l~~~~~~r-~~---~~~~el~~~lA~a~~~ei~~L~~aG~~~IQiDEP~l~~~l~~~~~~~~~~~~~av~~l~~~~~~v~ 624 (755)
T 2nq5_A 549 ITNWSFER-TD---IPRDQLFNQIGLAIKDEIKLLENAGIAIIQVDEAALREGLPLRKSKQKAYLDDAVHAFHIATSSVK 624 (755)
T ss_dssp HHHHSBCC-SS---SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCHHHHSCSSHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHhcc-Cc---ccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcccccccccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99776542 22 37899999999999999999999999999999999976442 1 223555666666665543
Q ss_pred -CCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCC---CcEEEEeEeeCCCCCCCCHHHHHHHH
Q 007631 235 -GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPL---GKYLFAGVVDGRNIWANDLASSLTTL 310 (595)
Q Consensus 235 -~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~---~k~l~lGVVdgrn~w~ed~~~~~~~i 310 (595)
+..+++|.|+|+++++ ++.|.++ ++|+|+||..+ + +++.+.. ++. ++.|++||||+++..+++++++.++|
T Consensus 625 ~~~~i~~HiC~G~~~~i-~~~L~~~-~aD~islE~~r-s-d~e~L~~-~~~~~~~~~v~lGvvd~~s~~ve~~eeV~~ri 699 (755)
T 2nq5_A 625 DETQIHTHMCYSKFDEI-IDAIRAL-DADVISIETSR-S-HGDIIES-FETAVYPLGIGLGVYDIHSPRVPTKEEVVANI 699 (755)
T ss_dssp TTSEEEEEECCSCCSTT-HHHHHHH-CCSEEEC----------------------CEEEEECSCTTSSCCCCHHHHHHHH
T ss_pred CCCeEEEEeccCCcHHH-HHHHHhC-CCCEEEEecCC-C-CHHHHHH-HHhccCCCeEEEeeccCccCCCCCHHHHHHHH
Confidence 3679999999999887 9999999 99999999433 2 4777765 653 67999999999999999999999999
Q ss_pred HHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 311 QDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 311 ~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
+++.+++|.+++||||+|||...+.. =+.+||.-|+..++.+.
T Consensus 700 ~~a~~~v~~e~l~lsPdCGl~t~t~~----------------e~~~kL~~mveaA~~vr 742 (755)
T 2nq5_A 700 ERPLRQLSPTQFWVNPDCGLKTRQEP----------------ETIAALKVLVAATKEVR 742 (755)
T ss_dssp HGGGGSSCGGGEEEECSSCCTTSCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccEEEeCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864322 26789999998887765
No 11
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=100.00 E-value=1.3e-40 Score=383.50 Aligned_cols=313 Identities=14% Similarity=0.133 Sum_probs=247.7
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (595)
Q Consensus 2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r 81 (595)
+|||++|||+ .+|++|+++|.+|+|+.++|+++.++.+++.++.|+++|||+||||||+|.|+|.++...|+++-
T Consensus 434 tt~vGSfprp---~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~Q~~~GldvvtdGE~~R~~~~~~f~~~l~G~~-- 508 (765)
T 1u1j_A 434 TTTIGSFPQT---VELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA-- 508 (765)
T ss_dssp BBCCSBCCCC---SCCC-------------CCHHHHHHHHHHHHHHHHHSSCCSBBCCBCTTCSCTTHHHHTTSTTEE--
T ss_pred cCccCCCCCC---HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeecchhccccHHHHHHHHhCCCc--
Confidence 5788899999 99999999999999999999999999999999999999999999999999999999987776651
Q ss_pred ccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHc-CCCCceEeehHHH
Q 007631 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (595)
Q Consensus 82 f~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~-g~~~K~vl~GP~T 160 (595)
|. ..+..+.++++| +..|.+.|+..+ ..+..++++++++++ +.++|.+|+||+|
T Consensus 509 ~~----------------------~~g~~~~~~~~~-~~~p~i~g~i~~--~~p~~ve~~~~l~~~~~~pvK~~l~GP~T 563 (765)
T 1u1j_A 509 FT----------------------ANGWVQSYGSRC-VKPPVIYGDVSR--PKAMTVFWSAMAQSMTSRPMKGMLTGPVT 563 (765)
T ss_dssp CC----------------------SSCCEEEETTEE-ECCCEECSCCCC--CSCSSTHHHHHHTTSCSSCBEEEEECHHH
T ss_pred cc----------------------cCCccccccccc-CcCCeeecCcCC--CCCCHHHHHHHHHHHhcCCeEEEecCHHH
Confidence 11 012335566654 788999998665 356699999999987 5789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC------hHHHHHHHHHHHHHHcCCC
Q 007631 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD------SHKLQAFSDAYSELQSSLS 234 (595)
Q Consensus 161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~------~~~~~~~~~ay~~l~~~~~ 234 (595)
++.++... .| .+..+++++|+.+|++++++|+++||++||||||.|...++ ++..+....+++.+..+.+
T Consensus 564 l~~~~~~r-~~---~~~~~l~~~lA~a~~~ev~~L~~aG~~~IQiDEP~l~~~l~~~~~~~~~~~~~av~~~~~~~~~v~ 639 (765)
T 1u1j_A 564 ILNWSFVR-ND---QPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQ 639 (765)
T ss_dssp HHHTSEEC-TT---SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCSSGGGHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcc-Cc---CcHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcccccccccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 98766532 22 37899999999999999999999999999999999987552 1234555666666665543
Q ss_pred -CCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCC----CcEEEEeEeeCCCCCCCCHHHHHHH
Q 007631 235 -GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPL----GKYLFAGVVDGRNIWANDLASSLTT 309 (595)
Q Consensus 235 -~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~----~k~l~lGVVdgrn~w~ed~~~~~~~ 309 (595)
+..+++|.|+|+++++ ++.|.++ ++|+|+||..+ + +++.+.. ++. ++.|++||||++++.+++++++.++
T Consensus 640 ~~~~i~~HiC~G~~~~i-~~~l~~~-~~D~islE~~r-s-~~e~L~~-~~~~~~~~~~v~lGvvd~~s~~ve~~eev~~r 714 (765)
T 1u1j_A 640 DSTQIHTHMCYSHFNDI-IHSIIDM-DADVITIENSR-S-DEKLLSV-FREGVKYGAGIGPGVYDIHSPRIPSSEEIADR 714 (765)
T ss_dssp SSSEEEEECSCSCCTTT-HHHHHTT-CCSEEECCBSS-S-CTTGGGG-GTTTTCCCSEECCBSSCTTSSSCCTHHHHHHH
T ss_pred CCCeEEEEeccCCcHHH-HHHHHhC-CCCEEEEeCCC-C-CHHHHHH-HHhhccCCCeEEEeecCCccCCCCCHHHHHHH
Confidence 3679999999999987 9999999 99999999433 2 4888775 553 6899999999999999999999999
Q ss_pred HHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhc
Q 007631 310 LQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (595)
Q Consensus 310 i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~ 369 (595)
|+++.+++|.+++||||+|||...+.. =+.+||.-|+..++.+.
T Consensus 715 i~~a~~~v~~e~l~lsPdCGl~t~t~~----------------e~~~kL~~mveaA~~vr 758 (765)
T 1u1j_A 715 VNKMLAVLEQNILWVNPDCGLKTRKYT----------------EVKPALKNMVDAAKLIR 758 (765)
T ss_dssp HHHHHHSSCSTTBCBBCSSCSSSSCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccEEEeCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999864322 26789998888887764
No 12
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-37 Score=332.86 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=136.8
Q ss_pred CCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCce
Q 007631 429 LPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA 508 (595)
Q Consensus 429 ~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~ 508 (595)
|||||||||||||||++|+++|++|++|+|+.++|+++++++|+++|++|+++||||||||||+|+|||+||+++|+||+
T Consensus 4 ~~~~~tt~vGSfprp~~l~~ar~~~~~g~i~~~~l~~~~~~~i~~~v~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~ 83 (375)
T 1ypx_A 4 VAPFYADHVGSILRTKGIKDAREKFQSGEITALELRKIENTEIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDGVE 83 (375)
T ss_dssp SSSCSBCCCSCCCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHTCSEECCTTTTC--CCHHHHTTSEEEE
T ss_pred CCCCccceeCcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcchhhHHHHHHHHCCCee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -eeecceeeec--CCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCC-C-ceeeeccHHHHHhhhcC--CCCCCC-hhHH
Q 007631 509 -FTVNGWVQSY--GSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKR-P-MKGMLTGPVTILNWSFV--RNDQPR-QGIN 580 (595)
Q Consensus 509 -~~~~g~v~~y--g~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k-~-vK~~lpgP~ti~~~s~~--~~y~~~-~~~~ 580 (595)
++.+||+|++ +++ +++|+|+|+|+++++++++|++|+|+++++ | +|+|||||+||+.|++. ++|.++ + ++
T Consensus 84 ~~~~~~~~~f~~~~~~-~~~p~i~g~i~~~~~p~~~~~~~l~~~~~~~~~vK~~l~gP~tl~~~~~~~~~~Y~~~~~-~l 161 (375)
T 1ypx_A 84 GYDAAGGIQFSKVQTK-SHSVKITGPIDFTTHPFIEDFIFLKEAVGDNHVAKQTIPSPAMLHYRGDIEYQPYLDDAE-KF 161 (375)
T ss_dssp EC-----------------CEEEEEEEECSCCTHHHHHHHHHHHHCSSSEECEEEECTHHHHHHEEECSHHHHHCHH-HH
T ss_pred eecCCCceeecCCCCC-ccCceecCCCCCCCCchHHHHHHHHHHhcCCCceEEecCCHHHHHHHHhcchhhccChHH-HH
Confidence 6778999844 444 789999999999833499999999999988 8 59999999999999874 457789 8 99
Q ss_pred HHHHHHHHHhh
Q 007631 581 QIQCPVNLRIF 591 (595)
Q Consensus 581 ~~diA~a~r~~ 591 (595)
+.|||+||++.
T Consensus 162 ~~~la~a~~~e 172 (375)
T 1ypx_A 162 ANDLATAYQKA 172 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 13
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=99.10 E-value=5.9e-10 Score=117.47 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=133.8
Q ss_pred ccHHHHHHHHHc---CCCCceEeehHHHHhh-hcc--CCCC--------cCCCCC-HHHHHHHHHHHHHHHHHHHHHcCC
Q 007631 136 KAVQEYKEAKAL---GMETVPVLVGPVSYLL-LSK--PAKG--------VEKSFS-LLSLIDKIIPVYKEVVAELKAAGA 200 (595)
Q Consensus 136 ~~~~~~~~a~~~---g~~~K~vl~GP~T~l~-lsk--~~~~--------y~~~~d-~~~ll~~L~~aY~~~l~~L~~aG~ 200 (595)
.+++.++.+++. +.+++..+.||+|++. +-. .++. |. ..+ ..++++.+++++.+.++.+.++||
T Consensus 129 ~v~e~~~~l~~~~~~~~~~~g~~~~P~tla~~l~~g~~~~~~~~~~~~~~~-~Pe~~~~ll~~l~~~~~~~~~~~~~aGa 207 (353)
T 1j93_A 129 YVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFA-EPKVLHALLQKFATSMAKYIRYQADSGA 207 (353)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSSCHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCceEEEecChHHHHHHHHHcCCCcccHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456667766643 3677889999999873 211 0111 21 112 246999999999999999999999
Q ss_pred CeEEeeccccccCCChHHH-----HHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCCh
Q 007631 201 TWIQFDEPTLVLDLDSHKL-----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTL 275 (595)
Q Consensus 201 ~~IQiDEP~L~~d~~~~~~-----~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l 275 (595)
+.|||+|| |+.-+++++. ..+++..+.+....+...+ +|.| |+.... ++.+.++ ++|++++|+. .++
T Consensus 208 d~iqi~D~-~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~~~~~-ih~c-~g~~~~-l~~l~~~-g~d~~~~d~~---~d~ 279 (353)
T 1j93_A 208 QAVQIFDS-WATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPL-ILYA-SGSGGL-LERLPLT-GVDVVSLDWT---VDM 279 (353)
T ss_dssp SEEEEECG-GGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCE-EEEC-SSCTTT-GGGGGGG-CCSEEECCTT---SCH
T ss_pred CEEEEeCc-ccccCCHHHHHHHhHHHHHHHHHHHHHhCCCCCE-EEEC-CChHHH-HHHHHhc-CCCEEEeCCC---CCH
Confidence 99999999 6655665542 3445555555431112333 3556 444454 8999999 9999999874 367
Q ss_pred hhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 276 DLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 276 ~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
+.+++.++ +|.++.|-||. ..-..+.+++.+.++++++.+|..+.++||+||+.
T Consensus 280 ~~~~~~~g-~~~~l~Gnldp-~~l~~~~e~i~~~v~~~l~~~~~~g~I~~~g~gi~ 333 (353)
T 1j93_A 280 ADGRRRLG-PNVAIQGNVDP-GVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIK 333 (353)
T ss_dssp HHHHHHTC-SSSEEECCBCG-GGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSCCC
T ss_pred HHHHHHcC-CCeEEEecCCH-HHHcCCHHHHHHHHHHHHHHhCCCCEEEeCCCCCC
Confidence 77776575 47899999999 66789999999999999998887789999999984
No 14
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=99.07 E-value=4.8e-09 Score=110.84 Aligned_cols=181 Identities=14% Similarity=0.114 Sum_probs=133.2
Q ss_pred ccHHHHHHHHH-c-CCCCceEeehHHHHhh-hc--cCCCC--------cCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCC
Q 007631 136 KAVQEYKEAKA-L-GMETVPVLVGPVSYLL-LS--KPAKG--------VEKSFS-LLSLIDKIIPVYKEVVAELKAAGAT 201 (595)
Q Consensus 136 ~~~~~~~~a~~-~-g~~~K~vl~GP~T~l~-ls--k~~~~--------y~~~~d-~~~ll~~L~~aY~~~l~~L~~aG~~ 201 (595)
..++.++.+++ + +.+++..+.||+|++. +- ..++. |. ..+ ..++++.|++++.+.++.+.++||+
T Consensus 130 ~~~ea~~~l~~~~~~~~l~g~~~~P~tla~~l~~gg~s~~~~~~~~~~~~-~Pe~~~~ll~~i~~~~~~~~~~~~~aGad 208 (359)
T 2inf_A 130 YVLETIKLLVNEQLNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYS-MPDAWNLLMSKLADMIIVYVKAQIKAGAK 208 (359)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEEECHHHHHHHHHHCSCCSSCHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhCCcceEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35566666664 3 4678899999999873 22 11111 21 112 2369999999999999999999999
Q ss_pred eEEeeccccccCCChHHH-----HHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChh
Q 007631 202 WIQFDEPTLVLDLDSHKL-----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLD 276 (595)
Q Consensus 202 ~IQiDEP~L~~d~~~~~~-----~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~ 276 (595)
.|||+|| |+.-+++++. ..+++.++.+... ...+++++| |+ ... ++.+.++ ++|++++|+. .+++
T Consensus 209 ~i~i~D~-~~~~lsp~~f~ef~~p~~~~i~~~i~~~--g~~~i~~~~-G~-~~~-l~~l~~~-g~d~~~~d~~---~d~~ 278 (359)
T 2inf_A 209 AIQIFDS-WVGALNQADYRTYIKPVMNRIFSELAKE--NVPLIMFGV-GA-SHL-AGDWHDL-PLDVVGLDWR---LGID 278 (359)
T ss_dssp EEEEECT-TGGGSCHHHHHHHTHHHHHHHHHHHGGG--CSCEEEECT-TC-GGG-HHHHHTS-SCSEEECCTT---SCHH
T ss_pred EEEEeCC-ccccCCHHHHHHHhHHHHHHHHHHHHHc--CCcEEEEcC-Cc-HHH-HHHHHHh-CCCEEEeCCC---CCHH
Confidence 9999999 7766776543 3445555555432 234555655 66 554 9999999 9999999864 3577
Q ss_pred hHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCC--CcEEEeCCCCCc
Q 007631 277 LIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK--DKVVVSTSCSLL 331 (595)
Q Consensus 277 ~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~--~rl~vspsCgL~ 331 (595)
.+++ . .++.++.|-||. ..-..+.+++.+.++++++. |. ++.++||+||+.
T Consensus 279 ~~~~-~-g~~~~l~Gnldp-~~l~~t~e~I~~~v~~~l~~-~~~~~g~Il~~gcgi~ 331 (359)
T 2inf_A 279 EARS-K-GITKTVQGNLDP-SILLAPWEVIEQKTKEILDQ-GMESDGFIFNLGHGVF 331 (359)
T ss_dssp HHHH-T-TCCSEEECCBCG-GGGGSCHHHHHHHHHHHHHH-HTTSSCEEBCBSSCCC
T ss_pred HHHH-c-CCCEEEEecCCh-HHhcCCHHHHHHHHHHHHHh-CCCCCCeEEeCCCCCC
Confidence 7776 4 567899999999 67789999999999999987 65 379999999995
No 15
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=98.47 E-value=2.8e-06 Score=89.93 Aligned_cols=185 Identities=11% Similarity=0.077 Sum_probs=129.2
Q ss_pred cHHHHHHHHH-c--CCCCceEeehHHHHhh-hc--cCCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHcCCCe
Q 007631 137 AVQEYKEAKA-L--GMETVPVLVGPVSYLL-LS--KPAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGATW 202 (595)
Q Consensus 137 ~~~~~~~a~~-~--g~~~K~vl~GP~T~l~-ls--k~~~~y~~-----~~d~---~~ll~~L~~aY~~~l~~L~~aG~~~ 202 (595)
.++.++.+++ + ++++...+.||+|++. +- ..++++.. ..++ .++++.++++..+.++...++|++.
T Consensus 134 v~eai~~l~~~~~~~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~i~aGad~ 213 (367)
T 1r3s_A 134 VFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQA 213 (367)
T ss_dssp HHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHcCCCccEEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 3445555543 3 4677778889999873 31 11111100 0133 3578899999999999999999999
Q ss_pred EEeeccccccCCChHHH-----HHHHHHHHHHH-cCCC----CCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCC
Q 007631 203 IQFDEPTLVLDLDSHKL-----QAFSDAYSELQ-SSLS----GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT 272 (595)
Q Consensus 203 IQiDEP~L~~d~~~~~~-----~~~~~ay~~l~-~~~~----~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~ 272 (595)
|||.+| |+.-+++++. ..+++..+.+. ...+ ...+++++| |+ ... ++.+.++ ++|++++|..
T Consensus 214 i~i~D~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~-G~-~~~-l~~l~~~-g~d~i~~d~~--- 285 (367)
T 1r3s_A 214 LQLFES-HAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAK-DG-HFA-LEELAQA-GYEVVGLDWT--- 285 (367)
T ss_dssp EEEEET-TGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEET-TC-GGG-HHHHTTS-SCSEEECCTT---
T ss_pred EEEecC-ccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcC-Cc-HHH-HHHHHhc-CCCEEEeCCC---
Confidence 999998 6655676543 34445555554 2100 245777766 55 455 9999999 9999999863
Q ss_pred CChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 273 KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 273 ~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
.++..+++.++ ++....|-+|. ..-..+.+++.+.++++++.+|....++++.||+.
T Consensus 286 ~dl~~a~~~~g-~~~~l~Gnldp-~~L~gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~ 342 (367)
T 1r3s_A 286 VAPKKARECVG-KTVTLQGNLDP-CALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLY 342 (367)
T ss_dssp SCHHHHHHHHC-SSSEEEEEECG-GGGGSCHHHHHHHHHHHHHHHCSSSEEEEESSCCC
T ss_pred CCHHHHHHHcC-CCeEEEeCCCh-HHhcCCHHHHHHHHHHHHHHhCCCCeeecCCCCCC
Confidence 46777766564 46788899998 66678999999999999987776679999999983
No 16
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=98.41 E-value=3.1e-06 Score=88.99 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=125.8
Q ss_pred cHHHHHHHH-HcC--CCCceEeehHHHHhh-hc--cCCCCcC-----CCCCH---HHHHHHHHHHHHHHHHHHHHcCCCe
Q 007631 137 AVQEYKEAK-ALG--METVPVLVGPVSYLL-LS--KPAKGVE-----KSFSL---LSLIDKIIPVYKEVVAELKAAGATW 202 (595)
Q Consensus 137 ~~~~~~~a~-~~g--~~~K~vl~GP~T~l~-ls--k~~~~y~-----~~~d~---~~ll~~L~~aY~~~l~~L~~aG~~~ 202 (595)
.++..+.++ +++ .++...+.||+|++. +- ..+.++. -..++ .++++.++++..+.++.+.++|++.
T Consensus 124 v~eai~~l~~~~~~~~plig~~~~P~tla~~l~~g~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~ 203 (354)
T 3cyv_A 124 VMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQA 203 (354)
T ss_dssp HHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhCCCeeEEEeCCcHHHHHHHHhCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 455566555 343 677888999999874 31 1111110 00133 3688899999999999999999999
Q ss_pred EEeeccccccCCChHHH-HHHHHHHHHHHcCCC------CCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCCh
Q 007631 203 IQFDEPTLVLDLDSHKL-QAFSDAYSELQSSLS------GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTL 275 (595)
Q Consensus 203 IQiDEP~L~~d~~~~~~-~~~~~ay~~l~~~~~------~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l 275 (595)
|||.+| ++.-++++.. +.....++++.+... ...+ ++.| ++.... ++.+.++ ++|++++|.. .++
T Consensus 204 i~i~d~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~i-i~~~-~g~~~~-l~~l~~~-g~d~i~~d~~---~dl 275 (354)
T 3cyv_A 204 VMIFDT-WGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPV-TLFT-KGGGQW-LEAMAET-GCDALGLDWT---TDI 275 (354)
T ss_dssp EEEECT-TGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECCE-EEEC-TTTTTT-HHHHHTT-SCSEEECCTT---SCH
T ss_pred EEEeCC-ccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCE-EEEC-CCHHHH-HHHHHhc-CCCEEEeCCC---CCH
Confidence 999998 4555666543 222333333333211 1333 3334 334555 9999999 9999998753 467
Q ss_pred hhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEeCCCCCc
Q 007631 276 DLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (595)
Q Consensus 276 ~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~-~rl~vspsCgL~ 331 (595)
+.+++.+ .++....|-||. ..-..+.+++.+.++++.+.+|. ...+++++||+.
T Consensus 276 ~~~~~~~-g~~~~l~Gn~dp-~~l~~t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~ 330 (354)
T 3cyv_A 276 ADARRRV-GNKVALQGNMDP-SMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIH 330 (354)
T ss_dssp HHHHHHH-TTTSEEECCBCG-GGGGSCHHHHHHHHHHHHTTTTTSSCEEBCBSSCCC
T ss_pred HHHHHHh-CCCeEEEecCCh-HHhCCCHHHHHHHHHHHHHHhCCCCCeEEecCCCCC
Confidence 7776656 357789999998 55688999999999999988775 479999999984
No 17
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=98.32 E-value=4.9e-06 Score=86.85 Aligned_cols=181 Identities=14% Similarity=0.087 Sum_probs=126.8
Q ss_pred cHHHHHHHHH-c-CCCCceEeehHHHHhh-hc--cCCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHcCCCeE
Q 007631 137 AVQEYKEAKA-L-GMETVPVLVGPVSYLL-LS--KPAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGATWI 203 (595)
Q Consensus 137 ~~~~~~~a~~-~-g~~~K~vl~GP~T~l~-ls--k~~~~y~~-----~~d~---~~ll~~L~~aY~~~l~~L~~aG~~~I 203 (595)
.++..+.+++ + +.++...+.||+|++. +- ..++.+.. ..++ .++++.++++..+.++.+.++|++.|
T Consensus 117 v~eai~~l~~~~~~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i 196 (338)
T 2eja_A 117 VYEIIKRVKEAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMDILTETVLAYLKEQIKAGADVV 196 (338)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECHHHHHHHHHHTSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHhcCccEEEecchHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 4455555553 3 3667778889999873 32 11111100 0133 36889999999999999999999999
Q ss_pred EeeccccccCCChHHH-----HHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhH
Q 007631 204 QFDEPTLVLDLDSHKL-----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLI 278 (595)
Q Consensus 204 QiDEP~L~~d~~~~~~-----~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l 278 (595)
||.+| ++.-++++.. ..+++.++.+.+. ++..+++++| |+ ... ++.+.++ ++|++++|.. -+++.+
T Consensus 197 ~i~d~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~~-g~-~~~-l~~l~~~-g~d~~~~d~~---~dl~~~ 267 (338)
T 2eja_A 197 QIFDS-WVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFFR-GS-SSF-IDLAVDY-RADALSVDWS---VDIPEL 267 (338)
T ss_dssp EEEET-TGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEES-SH-HHH-HHHHTTS-CCSEEECCTT---SCHHHH
T ss_pred EEecC-ccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEcC-Cc-HHH-HHHHHHc-CCCEEEeCCC---CCHHHH
Confidence 99998 5445665543 3444444555432 1245666655 55 454 9999999 9999999863 467777
Q ss_pred hhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEeCCCCC
Q 007631 279 KTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSL 330 (595)
Q Consensus 279 ~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~-~rl~vspsCgL 330 (595)
++.+ +....|-+|. ..-..+.+++.+.++++++.+|. ...++++.||+
T Consensus 268 ~~~~---~~~l~Gn~dp-~~l~gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi 316 (338)
T 2eja_A 268 FKIY---DKGFQGNLEP-AVLYASEEVIEEKTLGLLRRIPVKTRYVFNLGHGL 316 (338)
T ss_dssp HHHC---CSEEECCBCG-GGGGSCHHHHHHHHHHHHTTCCCSSSEEBCBSSCC
T ss_pred HHhC---CeEEEECCCH-HHhcCCHHHHHHHHHHHHHHhCCCCCeEEeCCCCC
Confidence 6656 5678899998 56678999999999999988775 47999999998
No 18
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=97.65 E-value=0.00094 Score=70.61 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=122.4
Q ss_pred cHHHHHHHH-HcC-------CCCceEeehHHHHhh-h--ccCCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHH
Q 007631 137 AVQEYKEAK-ALG-------METVPVLVGPVSYLL-L--SKPAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKA 197 (595)
Q Consensus 137 ~~~~~~~a~-~~g-------~~~K~vl~GP~T~l~-l--sk~~~~y~~-----~~d~---~~ll~~L~~aY~~~l~~L~~ 197 (595)
.++..+.++ +++ +++-..+-||+|++. + +..++.+.. ..++ .++++.++++..+.++...+
T Consensus 129 v~eai~~l~~~l~~~~~~~~vpligf~gaP~Tla~~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi~ 208 (368)
T 4exq_A 129 VTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIE 208 (368)
T ss_dssp HHHHHHHHHHHTBCTTSCBSSCEEEEEECHHHHHHHHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcCcccceeEEEeCCcHHHHHHHHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 333 345556679999864 2 111111100 0123 45888888899999999999
Q ss_pred cCCCeEEeeccccccCCChHHHHHH-HHHHHHHHcCCC------CCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeec
Q 007631 198 AGATWIQFDEPTLVLDLDSHKLQAF-SDAYSELQSSLS------GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 198 aG~~~IQiDEP~L~~d~~~~~~~~~-~~ay~~l~~~~~------~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
+|++.|||-++ |+.-+++++.+.| ...++++.+... ...++++++ |. ... ++.+.++ ++|++++|..
T Consensus 209 aGad~i~ifDs-~~~~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~-g~-~~~-l~~l~~~-g~d~i~~d~~- 282 (368)
T 4exq_A 209 AGAQAVMIFDT-WGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTK-GG-GLW-LEDLAAT-GVDAVGLDWT- 282 (368)
T ss_dssp HTCSEEEEEET-TGGGSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEET-TC-GGG-HHHHHTS-SCSEEECCTT-
T ss_pred hCCCEEEEeCC-ccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcC-Cc-HHH-HHHHHHh-CCCEEeeCCC-
Confidence 99999999776 5655666554433 333334443321 134555444 33 344 8999999 9999999863
Q ss_pred CCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEeCCCCCc
Q 007631 271 GTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (595)
Q Consensus 271 ~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~-~rl~vspsCgL~ 331 (595)
.+++..++.++ ++....|=+|..- -..+.+++.+.++++++..+. ...++++.||+.
T Consensus 283 --~dl~~ak~~~g-~~~~l~Gnldp~~-L~gt~e~I~~~v~~~l~~~g~~~g~I~n~Ghgi~ 340 (368)
T 4exq_A 283 --VNLGRARERVA-GRVALQGNLDPTI-LFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGIS 340 (368)
T ss_dssp --SCHHHHHHHHT-TSSEEEEEECGGG-GGSCHHHHHHHHHHHHHHHCSCSCEEEEESSCCC
T ss_pred --CCHHHHHHHhC-CCEEEEECCCHHH-hCCCHHHHHHHHHHHHHHhCCCCCEEEeCCCCCC
Confidence 36777766565 4666779999864 478999999999999988774 469999999984
No 19
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=97.44 E-value=0.0022 Score=67.03 Aligned_cols=184 Identities=14% Similarity=0.167 Sum_probs=116.2
Q ss_pred cHHHHHHHHH-cC--CCCceEeehHHHHhhhccCCC-----CcCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCeEEeec
Q 007631 137 AVQEYKEAKA-LG--METVPVLVGPVSYLLLSKPAK-----GVEKSFS-LLSLIDKIIPVYKEVVAELKAAGATWIQFDE 207 (595)
Q Consensus 137 ~~~~~~~a~~-~g--~~~K~vl~GP~T~l~lsk~~~-----~y~~~~d-~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDE 207 (595)
.++..+..++ +| +++-..+-||+|++......+ -|. ..+ -.++++.++++..+.++...++|++.|||-+
T Consensus 133 v~eai~~l~~~l~~~~pligf~g~P~Tla~~l~~~~~~~~~~~~-~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D 211 (348)
T 4ay7_A 133 VLEAIKIIREKVGPDVPIVGGMEGPVTVASDLVSVKSFMKWSIK-KTDLLEQALDIATEASIIYANAMVEAGADVIAIAD 211 (348)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEECHHHHHHHHHCHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHhCCCeeEEEeccchHHHHHhcccchHHHHHHHH-ChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeec
Confidence 3444555543 33 455667789999874211000 010 011 2457788888888889999999999999999
Q ss_pred cccccC-CChHHHHH-HHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCC
Q 007631 208 PTLVLD-LDSHKLQA-FSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLG 285 (595)
Q Consensus 208 P~L~~d-~~~~~~~~-~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~ 285 (595)
+.-..+ ++++..+. ....++++.+..+. ..+++.| |+.... ++.+.++ ++|++++|..- ++++..++.++ +
T Consensus 212 ~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~-~~iih~~-g~~~~~-l~~~~~~-g~d~i~~d~~~--~~~~~~k~~~g-~ 284 (348)
T 4ay7_A 212 PVASPDLMSPDSFRQFLKSRLQKFASSVNS-VTVLHIC-GNVNPI-LSDMADC-GFEGLSVEEKI--GSAKKGKEVIG-T 284 (348)
T ss_dssp GGGSTTTSCHHHHHHHHHHHHHHHHHHSSS-EEEEECC-SCCHHH-HHHHHTS-CCSEEECCGGG--CCHHHHHHHHT-T
T ss_pred cccccccCCHHHHHHHhhHHHHHHHhhccC-CcEEEec-CCcHHH-HHHHHHh-ccccccccchh--hHHHHHHHHhC-C
Confidence 854433 56655433 33334445443332 2345555 555565 8999999 99999988643 24555555454 4
Q ss_pred cEEEEeEeeCCC-CCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 286 KYLFAGVVDGRN-IWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 286 k~l~lGVVdgrn-~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
+....|=+|... .-..+.+++.+.++++.+.- .-++++.||+.
T Consensus 285 ~~~l~Gnldp~~~l~~g~~e~i~~~v~~~l~~~---g~I~~~Ghgi~ 328 (348)
T 4ay7_A 285 RARLVGNVSSPFTLLPGPVDKIKAEAKEALEGG---IDVLAPGCGIA 328 (348)
T ss_dssp SSEEEEEECCCCCCTTCCHHHHHHHHHHHHHTT---CSEEEESSSCC
T ss_pred CEEEEcCCCChHhhcCCCHHHHHHHHHHHHhCC---CCEEeCCCccC
Confidence 555668777543 34568899999999888732 35789999963
No 20
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=86.06 E-value=1.5 Score=48.45 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
+.++++.+.|+++||+.|+-+. ..+...+.+....+.... +..++|.. . ++....+ +.||+||.-.
T Consensus 29 ~~ve~al~~Gv~~vQlR~K~~~----~~~~~~~a~~l~~l~~~~-~v~liIND-------~-~dlA~~~-gAdGVHLgq~ 94 (540)
T 3nl6_A 29 GQVEAGLQNGVTLVQIREKDAD----TKFFIEEALQIKELCHAH-NVPLIIND-------R-IDVAMAI-GADGIHVGQD 94 (540)
T ss_dssp HHHHHHHHTTCSEEEECCSSSC----TTHHHHHHHHHHHHHHHT-TCCEEECS-------C-SHHHHHT-TCSEEEECTT
T ss_pred HHHHHHHHCCCCEEEEecCCCC----HHHHHHHHHHHHHHHHhc-CCEEEEeC-------c-HHHHHHc-CCCEEEEChh
Confidence 4445566889999999999543 233332333333333221 35677753 2 5666778 8999999744
Q ss_pred cCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcC---CCcEEEeC
Q 007631 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG---KDKVVVST 326 (595)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~---~~rl~vsp 326 (595)
+- ....+++.+++++.+++.+ .+++++.. +.+ .| .|-|.++|
T Consensus 95 dl--~~~~ar~~lg~~~iiG~S~--------ht~eea~~----A~~-~G~~~aDYv~~Gp 139 (540)
T 3nl6_A 95 DM--PIPMIRKLVGPDMVIGWSV--------GFPEEVDE----LSK-MGPDMVDYIGVGT 139 (540)
T ss_dssp SS--CHHHHHHHHCTTSEEEEEE--------CSHHHHHH----HHH-TCC--CCEEEESC
T ss_pred hc--CHHHHHHHhCCCCEEEEEC--------CCHHHHHH----HHH-cCCCCCCEEEEcC
Confidence 32 2344444456777777766 24565433 222 45 57777765
No 21
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=85.78 E-value=11 Score=37.01 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCCeEEeeccccc-----cCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEE
Q 007631 190 EVVAELKAAGATWIQFDEPTLV-----LDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGF 264 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~-----~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i 264 (595)
+.++++.+.|+++||+=|+-.. ..++..+...+.+....+.... +..++|.. . ++....+ +.||+
T Consensus 47 ~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~-~~~liInd-------~-~~lA~~~-gAdGV 116 (243)
T 3o63_A 47 QFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRY-GALFAVND-------R-ADIARAA-GADVL 116 (243)
T ss_dssp HHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHT-TCEEEEES-------C-HHHHHHH-TCSEE
T ss_pred HHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhh-CCEEEEeC-------H-HHHHHHh-CCCEE
Confidence 3344455789999999998521 1134444333333333343322 25677752 2 5566677 89999
Q ss_pred EEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 265 GFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 265 ~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
||.-.+- ....++..++.++.+++.+ .+++++. ++.+ .|.|=|.++|
T Consensus 117 HLg~~dl--~~~~~r~~~~~~~~iG~S~--------ht~~Ea~----~A~~-~GaDyI~vgp 163 (243)
T 3o63_A 117 HLGQRDL--PVNVARQILAPDTLIGRST--------HDPDQVA----AAAA-GDADYFCVGP 163 (243)
T ss_dssp EECTTSS--CHHHHHHHSCTTCEEEEEE--------CSHHHHH----HHHH-SSCSEEEECC
T ss_pred EecCCcC--CHHHHHHhhCCCCEEEEeC--------CCHHHHH----HHhh-CCCCEEEEcC
Confidence 9975432 2334444456677777654 4555543 2322 5677788876
No 22
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=69.88 E-value=55 Score=30.67 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHH---HHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEE
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKL---QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFG 265 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~---~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~ 265 (595)
.+.++.+.++|+++||++++.... ... ..+.+.+..+.... .+.+++. +. ++.+.++ ++|+++
T Consensus 34 ~~~~~~~~~~G~~~i~l~~~~~~~----~~~~~~~~~~~~l~~~~~~~-~v~v~v~-------~~-~~~a~~~-gad~v~ 99 (227)
T 2tps_A 34 VTVVQKALKGGATLYQFREKGGDA----LTGEARIKFAEKAQAACREA-GVPFIVN-------DD-VELALNL-KADGIH 99 (227)
T ss_dssp HHHHHHHHHHTCSEEEECCCSTTC----CCHHHHHHHHHHHHHHHHHH-TCCEEEE-------SC-HHHHHHH-TCSEEE
T ss_pred HHHHHHHHHCCCCEEEEecCCCCH----hHHHHHHHHHHHHHHHHHHc-CCeEEEc-------CH-HHHHHHc-CCCEEE
Confidence 455677788999999999875432 122 22222222332211 2456664 22 6677788 999999
Q ss_pred EEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 266 FDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 266 lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
+.-.. ..+..+++.++. +.+|+ +. .+++++ ..+. ..|.+-+.++|
T Consensus 100 l~~~~--~~~~~~~~~~g~---~~~~~-s~-----~t~~e~----~~a~-~~g~d~v~~~~ 144 (227)
T 2tps_A 100 IGQED--ANAKEVRAAIGD---MILGV-SA-----HTMSEV----KQAE-EDGADYVGLGP 144 (227)
T ss_dssp ECTTS--SCHHHHHHHHTT---SEEEE-EE-----CSHHHH----HHHH-HHTCSEEEECC
T ss_pred ECCCc--cCHHHHHHhcCC---cEEEE-ec-----CCHHHH----HHHH-hCCCCEEEECC
Confidence 84221 234444433432 34454 11 345543 2232 24667788765
No 23
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=69.27 E-value=76 Score=29.78 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=58.1
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecC
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRG 271 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~ 271 (595)
+..+.++|++|||++++ +.+.++...+.+....+. .+...+++. +. ++.+.+. ++|++|+....
T Consensus 35 ~~~~~~~G~~~v~lr~~----~~~~~~~~~~~~~l~~~~--~~~~~l~v~-------~~-~~~a~~~-gad~v~l~~~~- 98 (221)
T 1yad_A 35 IIITIQNEVDFIHIRER----SKSAADILKLLDLIFEGG--IDKRKLVMN-------GR-VDIALFS-TIHRVQLPSGS- 98 (221)
T ss_dssp HHHHHGGGCSEEEECCT----TSCHHHHHHHHHHHHHTT--CCGGGEEEE-------SC-HHHHHTT-TCCEEEECTTS-
T ss_pred HHHHHHCCCCEEEEccC----CCCHHHHHHHHHHHHHhc--CcCCeEEEe-------Ch-HHHHHHc-CCCEEEeCCCc-
Confidence 44566889999999977 344333333333332221 111246554 23 6778888 99999996432
Q ss_pred CCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 272 TKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 272 ~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
...+.++..++ +..+++.+ + +++++ .++. ..|.|-|.++|
T Consensus 99 -~~~~~~~~~~~-~~~ig~sv---~-----t~~~~----~~a~-~~gaD~i~~~~ 138 (221)
T 1yad_A 99 -FSPKQIRARFP-HLHIGRSV---H-----SLEEA----VQAE-KEDADYVLFGH 138 (221)
T ss_dssp -CCHHHHHHHCT-TCEEEEEE---C-----SHHHH----HHHH-HTTCSEEEEEC
T ss_pred -cCHHHHHHHCC-CCEEEEEc---C-----CHHHH----HHHH-hCCCCEEEECC
Confidence 23455554344 55555433 2 34443 3332 24667788877
No 24
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=68.99 E-value=56 Score=33.85 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHH-HHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEe-ccCCCCcccHHHHh---
Q 007631 182 DKIIPVYKEVVAEL-KAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIET-YFADVPAETYKILT--- 256 (595)
Q Consensus 182 ~~L~~aY~~~l~~L-~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~t-yfg~~~~~v~~~l~--- 256 (595)
++|...+...+... ...|++..-|=|-.+....++.+.+.|....+ ++....++.|++|+ -.|.....++..|.
T Consensus 140 ~~L~~~~~~ei~~gi~~t~vkag~IGEiGld~~~t~~q~~~f~aq~~-~A~~~~glPV~iH~~r~~~a~~e~l~iL~e~~ 218 (365)
T 3rhg_A 140 DAMAKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDGEKNSLRAAAL-AQNNNPYASMNIHMPGWQRRGDEVLDILLTEM 218 (365)
T ss_dssp HHHHHHHHHHHHTCSTTSSCCCCEEEEEECCTTCCHHHHHHHHHHHH-HHTTCTTCEEEEECCTTSCCHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhccccCCceeEEEEEEEcCCCCCHHHHHHHHHHHH-HHHHhcCCcEEEECCCCCcCHHHHHHHHHhcc
Confidence 45554444443321 12234433333333332345556666666544 43333135688886 43333222255554
Q ss_pred cCCCccEEEEEeec-CCCChhhHhhhCCCCcEEEEeEeeCCCC-C-----CCCHHHHHHHHHHHHhhcCCCcEEEeCCCC
Q 007631 257 SLKGVTGFGFDLIR-GTKTLDLIKTEFPLGKYLFAGVVDGRNI-W-----ANDLASSLTTLQDLAGTVGKDKVVVSTSCS 329 (595)
Q Consensus 257 ~l~pvd~i~lD~~~-~~~~l~~l~~~~p~~k~l~lGVVdgrn~-w-----~ed~~~~~~~i~~~~~~~~~~rl~vspsCg 329 (595)
+. +...+.+--+. +.++++..+..+..+-.|+++-+ |+++ . ..+-++-.+.|+++.+..+.+||.|++||+
T Consensus 219 ~~-~~~~vvi~H~~rs~~~~e~a~~~l~~G~~I~~~g~-g~~~tf~~~~~~~~d~~~a~~l~~li~~g~~drilleTD~p 296 (365)
T 3rhg_A 219 GC-DPAKISLAHSDPSGKDIDYQCKMLDRGVWLEFDMI-GLDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLSHDVF 296 (365)
T ss_dssp CC-CGGGEEESCCGGGTTCHHHHHHHHHTTCEEEECCT-TCCCBCSSSCBCCCHHHHHHHHHHHHHTTCGGGEEECCCCC
T ss_pred CC-CCCceEEecCCCCCCCHHHHHHHHhCCCEEEecCC-CccccccccccccchHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 34 44444332222 22455554442223557777754 3222 1 122345667788888777789999999998
Q ss_pred Ccccccc
Q 007631 330 LLHTAVD 336 (595)
Q Consensus 330 L~h~P~~ 336 (595)
.+ .|+.
T Consensus 297 ~l-~~~~ 302 (365)
T 3rhg_A 297 LK-QMWA 302 (365)
T ss_dssp SG-GGSG
T ss_pred CC-CCCC
Confidence 85 3443
No 25
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*
Probab=65.06 E-value=24 Score=36.17 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=70.7
Q ss_pred cCCCeEEeecccccc-CCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCc--cEEEEEeecCCCC
Q 007631 198 AGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGV--TGFGFDLIRGTKT 274 (595)
Q Consensus 198 aG~~~IQiDEP~L~~-d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pv--d~i~lD~~~~~~~ 274 (595)
-|++.+.| |-.|.. ..++.+.+.|....+.-.. . ++.|++|+-.|.-...+++.|.+. ++ ..+.+--....++
T Consensus 151 tg~k~g~I-Eigld~~~~~~~q~~~f~aq~~lA~~-~-glPViiH~~~gr~a~~~~~iL~~~-~~~~~~~vi~H~~~~~~ 226 (339)
T 3gtx_A 151 TGIRAGVI-KLASSRDAITPYEQLFFRAAARVQRE-T-GVPIITHTQEGQQGPQQAELLTSL-GADPARIMIGHMDGNTD 226 (339)
T ss_dssp SSCCCSEE-EEECCSSCCCHHHHHHHHHHHHHHHH-H-CCCEEEECSTTCCHHHHHHHHHHT-TCCGGGEEECCGGGCCC
T ss_pred cCcccceE-EEEcCCCCCCHHHHHHHHHHHHHHHH-H-CCeEEEeCCCCcCHHHHHHHHHHc-CCCcccEEEEccCCCCC
Confidence 34555666 665554 3455566666665543222 1 245888875542221126666554 43 3444433332245
Q ss_pred hhhHhhhCCCCcEEEEeEeeCCCCCC--CCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 275 LDLIKTEFPLGKYLFAGVVDGRNIWA--NDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 275 l~~l~~~~p~~k~l~lGVVdgrn~w~--ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
++..+..+..+-.|+++-+- ..... .+-..-.+.++++.+..+.+||.+++||+..
T Consensus 227 ~e~a~~~l~~G~~i~~~g~~-t~~~~~~p~~~~~~~~l~~li~~~~~drilleTD~p~~ 284 (339)
T 3gtx_A 227 PAYHRETLRHGVSIAFDRIG-LQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWH 284 (339)
T ss_dssp HHHHHHHHTTTCEEEECCTT-CCSSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCCEEE
T ss_pred HHHHHHHHHcCcEEEEccCc-cccccCCCchHHHHHHHHHHHHhcCCCeEEEecCCCcc
Confidence 66555433345677775541 11111 1222456778888887888999999999975
No 26
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=61.25 E-value=1.5e+02 Score=31.01 Aligned_cols=126 Identities=20% Similarity=0.197 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCC--CeEEe-eccccccCC---ChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCc
Q 007631 176 SLLSLIDKIIPVYKEVVAELKAAGA--TWIQF-DEPTLVLDL---DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPA 249 (595)
Q Consensus 176 d~~~ll~~L~~aY~~~l~~L~~aG~--~~IQi-DEP~L~~d~---~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~ 249 (595)
+..++...+..--++++..|.+.|+ ++||+ .|+.....- -+...+.+..+|..+.+..+..+|++|..++.-.+
T Consensus 131 ~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~~~~ 210 (399)
T 1ur4_A 131 NFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETSG 210 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcchH
Confidence 5567777777666788899988885 47765 576553311 12234677778887776555678888887764332
Q ss_pred c---cHHHHhc--CCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 007631 250 E---TYKILTS--LKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVV 324 (595)
Q Consensus 250 ~---v~~~l~~--l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~v 324 (595)
. .++.+.. . .+|.|++.+-.. |-.+++.+.+.|+.+.+..+ +.|+|
T Consensus 211 ~~~~~~d~l~~~g~-d~DvIG~syYp~---------------------------W~~~l~~l~~~l~~l~~ryg-KpV~v 261 (399)
T 1ur4_A 211 RYAWIAETLHRHHV-DYDVFASSYYPF---------------------------WHGTLKNLTSVLTSVADTYG-KKVMV 261 (399)
T ss_dssp HHHHHHHHHHHTTC-CCSEEEEEECTT---------------------------TSCCHHHHHHHHHHHHHHHC-CEEEE
T ss_pred HHHHHHHHHHHcCC-CcCeEeEecCcc---------------------------chhhHHHHHHHHHHHHHHhC-CcEEE
Confidence 2 1243333 3 466666664210 22346777778888766666 45665
Q ss_pred -eCCCCC
Q 007631 325 -STSCSL 330 (595)
Q Consensus 325 -spsCgL 330 (595)
=+.|..
T Consensus 262 ~EtG~~~ 268 (399)
T 1ur4_A 262 AETSYTY 268 (399)
T ss_dssp EEECCCS
T ss_pred EEecCCc
Confidence 455554
No 27
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=57.35 E-value=20 Score=39.62 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCC---------CCcccH
Q 007631 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFAD---------VPAETY 252 (595)
Q Consensus 182 ~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~---------~~~~v~ 252 (595)
+++...|++.++.|.+.||+.+-+.= -.+-.+.++...+.+.... ++.++++.-|.+ +.+. +
T Consensus 122 ~e~~~~~~~qi~~l~~~gvD~l~~ET-----~~~~~Ea~aa~~a~~~~~~---~~Pv~vS~t~~~~g~~~~G~~~~~~-~ 192 (566)
T 1q7z_A 122 EEFYENFRETVEIMVEEGVDGIIFET-----FSDILELKAAVLAAREVSR---DVFLIAHMTFDEKGRSLTGTDPANF-A 192 (566)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEE-----ECCHHHHHHHHHHHHHHCS---SSCEEEEECCCTTSCCTTSCCHHHH-H
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEec-----cCCHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCCeeCCCCcHHHH-H
Confidence 68999999999999999999886651 1122345555555544322 356777755531 1122 5
Q ss_pred HHHhcCCCccEEEEEeecCCCChhhHhhhCC--CCcEEE----EeEe---eCCCCCCCCHHHHHHHHHHH
Q 007631 253 KILTSLKGVTGFGFDLIRGTKTLDLIKTEFP--LGKYLF----AGVV---DGRNIWANDLASSLTTLQDL 313 (595)
Q Consensus 253 ~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p--~~k~l~----lGVV---dgrn~w~ed~~~~~~~i~~~ 313 (595)
..+..+ +++++++.+..++..+..+.+.+. .++.++ .|.. |++..|..++++..+.+++.
T Consensus 193 ~~l~~~-~~~avG~NC~~gp~~~~~~l~~l~~~~~~p~~vyPNaG~p~~~~~~~~~~~~p~~~a~~~~~~ 261 (566)
T 1q7z_A 193 ITFDEL-DIDALGINCSLGPEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHDFAVHIDSY 261 (566)
T ss_dssp HHHHTS-SCSEEEEESSSCHHHHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEECCCCHHHHHTTHHHH
T ss_pred HHhhcc-CCCEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccCCccccCCCHHHHHHHHHHH
Confidence 667788 999999999766555554443221 122222 1333 77777888888755555544
No 28
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}
Probab=55.93 E-value=19 Score=37.01 Aligned_cols=104 Identities=20% Similarity=0.421 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEE-----------eccCCCC-
Q 007631 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE-----------TYFADVP- 248 (595)
Q Consensus 181 l~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~-----------tyfg~~~- 248 (595)
++++..+|.|.+....++|.+.|-+--=+|+.-. ...+-+.++|..+..... -.++|| .|+|+-+
T Consensus 132 l~~V~~AY~EQ~~~Ve~~G~~~ILMASRaLA~~A--~~pdDY~~VY~~vL~q~~-~PVILHWLG~mFDPaL~GYWGs~d~ 208 (396)
T 4dnh_A 132 IDDILAAYESQIEAIEAEGGRIILMASRALAAAA--KGPEDYIRVYDRVLSQVK-EPVIIHWLGEMFDPALEGYWGNADH 208 (396)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCCHHHHHHC--CSHHHHHHHHHHHHHHCS-SCEEEEEECTTTCGGGTTTTSCSSH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEehhHHHHHHh--CCHHHHHHHHHHHHHhcC-CCEEEEecccccChhhccccCCCCH
Confidence 6899999999999999999998876655553211 124567788888766443 235554 5777643
Q ss_pred -c---ccHHHHh--cCCCccEEEEEeecCCCChhhHhhhCCCCcEEE
Q 007631 249 -A---ETYKILT--SLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLF 289 (595)
Q Consensus 249 -~---~v~~~l~--~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~ 289 (595)
. .+++.+. .- +||||-+-+-+...+.. ++..+|.+-.+.
T Consensus 209 ~~A~~t~l~lI~~~~~-kVDGIKiSLLDa~~Ei~-lRrrLP~gVrmY 253 (396)
T 4dnh_A 209 MAAMKTCLDVLEAHAA-KVDGIKISLLSKEKEIV-MRRQLPKGVRMY 253 (396)
T ss_dssp HHHHHHHHHHHHHTGG-GEEEEEEESCCHHHHHH-HHTSCCTTCEEE
T ss_pred HHHHHHHHHHHHhChh-hcCceEEeeeccHhHHH-HHHhCCCcceee
Confidence 1 1234443 24 68999888765322222 333577754444
No 29
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=54.47 E-value=26 Score=36.36 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=60.5
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCcc--EE---EEEeecCCCChhhHhhhCCCCcE
Q 007631 214 LDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVT--GF---GFDLIRGTKTLDLIKTEFPLGKY 287 (595)
Q Consensus 214 ~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd--~i---~lD~~~~~~~l~~l~~~~p~~k~ 287 (595)
+++.+.+.|+.+...-.. . .+.|.+||--+.-. +. ++.|.+. .++ .+ |+++. .+.+..+.-+..+-.
T Consensus 187 ~t~~E~k~frA~a~aa~e-t-G~Pv~iHt~~~~~~~e~-l~iL~ee-G~~~~~vvi~H~~~~---~d~~~~~~~l~~G~y 259 (360)
T 3tn4_A 187 ITEYEKMFFRAAARAQKE-T-GAVIITHTQEGTMGPEQ-AAYLLEH-GADPKKIVIGHMCDN---TDPDYHRKTLAYGVY 259 (360)
T ss_dssp CCHHHHHHHHHHHHHHHH-H-CCEEEEECSTTCCHHHH-HHHHHHT-TCCGGGEEECCGGGC---CCHHHHHHHHTTTCE
T ss_pred CCHHHHHHHHHHHHHHHH-h-CCcEEEEcCcccCCHHH-HHHHHHc-CCCCCceEEEcCCCC---CCHHHHHHHHHcCCE
Confidence 455566666655443222 1 25688888765432 33 6666665 554 23 33443 344444332334567
Q ss_pred EEEeEe--eCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCC
Q 007631 288 LFAGVV--DGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCS 329 (595)
Q Consensus 288 l~lGVV--dgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCg 329 (595)
|++.-+ ++.- ...+-++-++.|.++.+..+.|||.||+||+
T Consensus 260 l~fD~iG~~~~~-~~p~d~~r~~~l~~lv~~g~~drILLstDa~ 302 (360)
T 3tn4_A 260 IAFDRFGIQGMV-GAPTDEERVRTLLALLRDGYEKQIMLSHDTV 302 (360)
T ss_dssp EEECCTTCCCST-TCCCHHHHHHHHHHHHHTTCGGGEEECCCCE
T ss_pred EEEccccccccc-CCCChHHHHHHHHHHHHhcCcceEEEecCCC
Confidence 776422 2211 1123355667788888877789999999994
No 30
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Probab=54.13 E-value=1.1e+02 Score=30.85 Aligned_cols=124 Identities=10% Similarity=-0.008 Sum_probs=61.9
Q ss_pred CeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEec-cCCCC-cccHHHHhcCCCcc--EEEEEeecCCCChh
Q 007631 201 TWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETY-FADVP-AETYKILTSLKGVT--GFGFDLIRGTKTLD 276 (595)
Q Consensus 201 ~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~ty-fg~~~-~~v~~~l~~l~pvd--~i~lD~~~~~~~l~ 276 (595)
+.+-| |.-|.....+...+.|....+ ++... ++.|++|+- .|.-. +. ++.|.+. +++ .+.+--....++.+
T Consensus 130 k~~ai-EiGld~~~~~~q~~~f~~q~~-lA~~~-glPv~iH~~~~~r~a~e~-l~iL~~~-g~~~~~~~i~H~f~~~~~e 204 (330)
T 2ob3_A 130 RAGII-KVATTGKATPFQELVLKAAAR-ASLAT-GVPVTTHTAASQRDGEQQ-AAIFESE-GLSPSRVCIGHSDDTDDLS 204 (330)
T ss_dssp CCSEE-EEECSSSCCHHHHHHHHHHHH-HHHHH-CCCEEEECCGGGTHHHHH-HHHHHHT-TCCGGGEEECSGGGCCCHH
T ss_pred ceeEE-EEeCCCCCCHHHHHHHHHHHH-HHHHh-CCeEEEECCCCCCCHHHH-HHHHHHc-CcCcccEEEeCCCCCCCHH
Confidence 44555 544432234445555555543 32211 245788863 12111 33 5555544 442 32222221123454
Q ss_pred hHhhhCCCCcEEEEeEeeCCCCC-------------CCCHHHHHHHHHHHHhhcCCCcEEEeCCCCC
Q 007631 277 LIKTEFPLGKYLFAGVVDGRNIW-------------ANDLASSLTTLQDLAGTVGKDKVVVSTSCSL 330 (595)
Q Consensus 277 ~l~~~~p~~k~l~lGVVdgrn~w-------------~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL 330 (595)
..+..+..+-.|+++. -|.... ..+.++-.+.++++.+..+.+||.|+|||+.
T Consensus 205 ~a~~~~~~G~~i~~~~-~G~~tf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~drilleTD~p~ 270 (330)
T 2ob3_A 205 YLTALAARGYLIGLDH-IPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWTF 270 (330)
T ss_dssp HHHHHHHTTCEEEECC-TTCCCTTCTTCHHHHHHHCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCS
T ss_pred HHHHHHhCCCEEEeCC-CccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCC
Confidence 4443222355677763 122222 1233455667888888888899999999986
No 31
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=50.13 E-value=23 Score=33.96 Aligned_cols=124 Identities=14% Similarity=0.175 Sum_probs=59.4
Q ss_pred HHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeec--
Q 007631 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR-- 270 (595)
Q Consensus 193 ~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~-- 270 (595)
+.+.++|+++||+++---...-.... +.++. +.+.. ++.+.++.-.-+. +. ++.+.+. ++|++++-...
T Consensus 39 ~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~----i~~~~-~ipv~v~ggI~~~-~~-~~~~l~~-Gad~V~lg~~~l~ 109 (244)
T 1vzw_A 39 LAWQRSGAEWLHLVDLDAAFGTGDNR-ALIAE----VAQAM-DIKVELSGGIRDD-DT-LAAALAT-GCTRVNLGTAALE 109 (244)
T ss_dssp HHHHHTTCSEEEEEEHHHHHTSCCCH-HHHHH----HHHHC-SSEEEEESSCCSH-HH-HHHHHHT-TCSEEEECHHHHH
T ss_pred HHHHHcCCCEEEEecCchhhcCCChH-HHHHH----HHHhc-CCcEEEECCcCCH-HH-HHHHHHc-CCCEEEECchHhh
Confidence 66678999999998621111000111 22222 22211 2456666222222 33 5667778 99999887542
Q ss_pred CCCChhhHhhhCCCCcEEEEeEee---CCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 271 GTKTLDLIKTEFPLGKYLFAGVVD---GRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 271 ~~~~l~~l~~~~p~~k~l~lGVVd---grn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
++..+..+.+.++....+++-+-+ -.+-|.++-....+.++++.+ .|.+.+.+.+
T Consensus 110 ~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~-~G~~~i~~~~ 167 (244)
T 1vzw_A 110 TPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNK-EGCARYVVTD 167 (244)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHH-TTCCCEEEEE
T ss_pred CHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHh-CCCCEEEEec
Confidence 222233333334421223333211 124555532233444555544 5667787754
No 32
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=49.71 E-value=46 Score=30.87 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
.+.++.+.++|+++||+++|... ........+....+.... +..+++. +. .+.+.+. ++|++++..
T Consensus 29 ~~~~~~~~~~G~~~i~l~~~~~~----~~~~~~~~~~l~~~~~~~-~v~v~v~-------~~-~~~a~~~-gad~v~l~~ 94 (215)
T 1xi3_A 29 VESVREALEGGATAIQMRIKNAP----TREMYEIGKTLRQLTREY-DALFFVD-------DR-VDVALAV-DADGVQLGP 94 (215)
T ss_dssp HHHHHHHHHTTCSEEEECCCSCC----HHHHHHHHHHHHHHHHHT-TCEEEEE-------SC-HHHHHHH-TCSEEEECT
T ss_pred HHHHHHHHHCCCCEEEECCCCCC----HHHHHHHHHHHHHHHHHc-CCeEEEc-------Ch-HHHHHHc-CCCEEEECC
Confidence 35567778999999999987443 222222222222222211 2455553 22 5677788 999999853
Q ss_pred ecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 269 IRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 269 ~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
.. ...+.++... .+..+++.+ .+++++. ++. ..|.+-+.++|
T Consensus 95 ~~--~~~~~~~~~~-~~~~~~v~~--------~t~~e~~----~~~-~~g~d~i~~~~ 136 (215)
T 1xi3_A 95 ED--MPIEVAKEIA-PNLIIGASV--------YSLEEAL----EAE-KKGADYLGAGS 136 (215)
T ss_dssp TS--CCHHHHHHHC-TTSEEEEEE--------SSHHHHH----HHH-HHTCSEEEEEC
T ss_pred cc--CCHHHHHHhC-CCCEEEEec--------CCHHHHH----HHH-hcCCCEEEEcC
Confidence 22 2244444322 344444333 3555532 222 24667788875
No 33
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=46.62 E-value=16 Score=35.08 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=60.3
Q ss_pred HHHHHHHcCCCeEEeecc--ccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 191 VVAELKAAGATWIQFDEP--TLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP--~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
+.+.+.++|+++||+++- ....... . +.+++ +.+.. .+.+.++.-.-+. +. ++.+.+. ++|++++..
T Consensus 36 ~a~~~~~~Gad~i~v~~~d~~~~~~~~--~-~~i~~----i~~~~-~ipv~v~ggi~~~-~~-~~~~l~~-Gad~V~lg~ 104 (244)
T 2y88_A 36 AALGWQRDGAEWIHLVDLDAAFGRGSN--H-ELLAE----VVGKL-DVQVELSGGIRDD-ES-LAAALAT-GCARVNVGT 104 (244)
T ss_dssp HHHHHHHTTCSEEEEEEHHHHTTSCCC--H-HHHHH----HHHHC-SSEEEEESSCCSH-HH-HHHHHHT-TCSEEEECH
T ss_pred HHHHHHHcCCCEEEEEcCcccccCCCh--H-HHHHH----HHHhc-CCcEEEECCCCCH-HH-HHHHHHc-CCCEEEECc
Confidence 344677899999999862 1111111 1 22222 22211 2456665222222 33 6667778 999999876
Q ss_pred ec--CCCChhhHhhhCCCCcEEEEeEeeCC----C------CCCCCHHHHHHHHHHHHhhcCCCcEEEeC
Q 007631 269 IR--GTKTLDLIKTEFPLGKYLFAGVVDGR----N------IWANDLASSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 269 ~~--~~~~l~~l~~~~p~~k~l~lGVVdgr----n------~w~ed~~~~~~~i~~~~~~~~~~rl~vsp 326 (595)
.. ++..+..+.+.++. .+.+|+ |.+ + -|.++.....+.++.+.+ .|.+.|.+++
T Consensus 105 ~~l~~p~~~~~~~~~~g~--~~~~~l-d~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~-~G~~~i~~~~ 170 (244)
T 2y88_A 105 AALENPQWCARVIGEHGD--QVAVGL-DVQIIDGEHRLRGRGWETDGGDLWDVLERLDS-EGCSRFVVTD 170 (244)
T ss_dssp HHHHCHHHHHHHHHHHGG--GEEEEE-EEEEETTEEEEEEGGGTEEEEEHHHHHHHHHH-TTCCCEEEEE
T ss_pred hHhhChHHHHHHHHHcCC--CEEEEE-eccccCCCCEEEECCccCCCCCHHHHHHHHHh-CCCCEEEEEe
Confidence 43 22223333333442 233333 222 1 344422234445555544 4667788765
No 34
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=45.90 E-value=42 Score=32.09 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=64.0
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeec
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~ 270 (595)
+++.+.++|+++||+-++.-.........+.+.+ +. .. ++.+.+..+.-+..+ +..+... ++|++++--..
T Consensus 35 ~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~----i~-~~-~ipvi~~Ggi~~~~~--~~~~~~~-Gad~V~lg~~~ 105 (241)
T 1qo2_A 35 LVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEK----LS-EF-AEHIQIGGGIRSLDY--AEKLRKL-GYRRQIVSSKV 105 (241)
T ss_dssp HHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHH----GG-GG-GGGEEEESSCCSHHH--HHHHHHT-TCCEEEECHHH
T ss_pred HHHHHHHcCCCEEEEecccccccCCchhHHHHHH----HH-hc-CCcEEEECCCCCHHH--HHHHHHC-CCCEEEECchH
Confidence 4455668999999998864421111122333333 22 11 256777655443333 4556678 89999886432
Q ss_pred --CCCChhhHhhhCCCCcEEEEeEeeCC------CCCCCCHH-HHHHHHHHHHhhcCCCcEEEeC
Q 007631 271 --GTKTLDLIKTEFPLGKYLFAGVVDGR------NIWANDLA-SSLTTLQDLAGTVGKDKVVVST 326 (595)
Q Consensus 271 --~~~~l~~l~~~~p~~k~l~lGVVdgr------n~w~ed~~-~~~~~i~~~~~~~~~~rl~vsp 326 (595)
+++.+..+ +.++ ..+.+|+ |.+ +-|.++-. ...++++++.+ .|.+.+++++
T Consensus 106 l~~p~~~~~~-~~~g--~~i~~~~-d~~~~~v~~~g~~~~~~~~~~e~~~~~~~-~G~~~i~~t~ 165 (241)
T 1qo2_A 106 LEDPSFLKSL-REID--VEPVFSL-DTRGGRVAFKGWLAEEEIDPVSLLKRLKE-YGLEEIVHTE 165 (241)
T ss_dssp HHCTTHHHHH-HTTT--CEEEEEE-EEETTEECCTTCSSCSCCCHHHHHHHHHT-TTCCEEEEEE
T ss_pred hhChHHHHHH-HHcC--CcEEEEE-EecCCEEEECCceecCCCCHHHHHHHHHh-CCCCEEEEEe
Confidence 34445555 4464 3445554 333 34554211 22334444433 5667777754
No 35
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=45.43 E-value=1.9e+02 Score=29.36 Aligned_cols=136 Identities=9% Similarity=-0.042 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCCeEEee--------ccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCC
Q 007631 189 KEVVAELKAAGATWIQFD--------EPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLK 259 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiD--------EP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~ 259 (595)
.++++.|.++|++.|.+= .|.+..-. ..+.+.++.. .+..++.++.+-++.+... +. ++...+.
T Consensus 33 ~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~-~~~~e~l~~i----~~~~~~~~i~~l~~p~~~~~~~-i~~a~~a- 105 (345)
T 1nvm_A 33 RAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGR-HTDLEYIEAV----AGEISHAQIATLLLPGIGSVHD-LKNAYQA- 105 (345)
T ss_dssp HHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCS-SCHHHHHHHH----HTTCSSSEEEEEECBTTBCHHH-HHHHHHH-
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCC-CCHHHHHHHH----HhhCCCCEEEEEecCCcccHHH-HHHHHhC-
Confidence 356677778999999992 33322111 1234444333 2222334555444444222 33 6666778
Q ss_pred CccEEEEEeecC-CCChhhHhhhC-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccccc
Q 007631 260 GVTGFGFDLIRG-TKTLDLIKTEF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (595)
Q Consensus 260 pvd~i~lD~~~~-~~~l~~l~~~~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P~~ 336 (595)
+++++++-..-+ .+....+.+.. ..+..+...+-|+ .+.+++.+++.++.+.+ .|.+.|.+.-.-|... |.+
T Consensus 106 Gvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a---~~~~~e~~~~ia~~~~~-~Ga~~i~l~DT~G~~~-P~~ 179 (345)
T 1nvm_A 106 GARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMS---HMIPAEKLAEQGKLMES-YGATCIYMADSGGAMS-MND 179 (345)
T ss_dssp TCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEEST---TSSCHHHHHHHHHHHHH-HTCSEEEEECTTCCCC-HHH
T ss_pred CcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeC---CCCCHHHHHHHHHHHHH-CCCCEEEECCCcCccC-HHH
Confidence 899998854322 12333322211 1356777777765 57788999988888876 4778999999888873 543
No 36
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=43.26 E-value=30 Score=33.77 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccccCCChHH--------------HHHHHHHHHHHHcCCCCCcEEEEeccCCC-Cccc
Q 007631 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHK--------------LQAFSDAYSELQSSLSGLNVLIETYFADV-PAET 251 (595)
Q Consensus 187 aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~--------------~~~~~~ay~~l~~~~~~~~i~l~tyfg~~-~~~v 251 (595)
...++++.|.++|+++||++-|+--.-.+... .+...+..+.+.+.. +..+++-+|+... ...
T Consensus 33 ~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~-~~Pv~~m~~~~~~~~~~- 110 (262)
T 1rd5_A 33 TTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL-SCPVVLLSYYKPIMFRS- 110 (262)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC-SSCEEEECCSHHHHSCC-
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCEEEEecCcHHHHHH-
Confidence 34567888999999999999886311111111 111222333343322 2457766665421 111
Q ss_pred HHHHhcCCCccEEEE
Q 007631 252 YKILTSLKGVTGFGF 266 (595)
Q Consensus 252 ~~~l~~l~pvd~i~l 266 (595)
++.+.+. ++|++++
T Consensus 111 ~~~a~~a-Gadgv~v 124 (262)
T 1rd5_A 111 LAKMKEA-GVHGLIV 124 (262)
T ss_dssp THHHHHT-TCCEEEC
T ss_pred HHHHHHc-CCCEEEE
Confidence 3447778 9999987
No 37
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=43.24 E-value=60 Score=32.84 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=40.5
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEee
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~~ 269 (595)
++.+..++|++.||+|-. +. +.++++...+.. ++.+-.+ |++. ++ +..+.+. +||.|++=..
T Consensus 219 e~~eAl~aGaDiImLDn~------s~---~~l~~av~~~~~---~v~leaS---GGIt~~~-i~~~A~t-GVD~IsvGal 281 (300)
T 3l0g_A 219 QVEESLSNNVDMILLDNM------SI---SEIKKAVDIVNG---KSVLEVS---GCVNIRN-VRNIALT-GVDYISIGCI 281 (300)
T ss_dssp HHHHHHHTTCSEEEEESC------CH---HHHHHHHHHHTT---SSEEEEE---SSCCTTT-HHHHHTT-TCSEEECGGG
T ss_pred HHHHHHHcCCCEEEECCC------CH---HHHHHHHHhhcC---ceEEEEE---CCCCHHH-HHHHHHc-CCCEEEeCcc
Confidence 344555789999999953 33 334444444432 3455555 7776 56 8889999 9999887643
No 38
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=42.64 E-value=63 Score=32.39 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=38.9
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEe
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~ 268 (595)
+++..++|+++|++|- ++.+++....+..... .+++.+..+ |++. ++ +..+.+. +||+|.+=-
T Consensus 206 a~eA~~aGaD~I~LDn------~~~e~l~~av~~l~~~---~~~v~ieAS---GGIt~en-i~~~a~t-GVD~IsvGs 269 (285)
T 1o4u_A 206 ALRAVEAGADIVMLDN------LSPEEVKDISRRIKDI---NPNVIVEVS---GGITEEN-VSLYDFE-TVDVISSSR 269 (285)
T ss_dssp HHHHHHTTCSEEEEES------CCHHHHHHHHHHHHHH---CTTSEEEEE---ECCCTTT-GGGGCCT-TCCEEEEGG
T ss_pred HHHHHHcCCCEEEECC------CCHHHHHHHHHHhhcc---CCCceEEEE---CCCCHHH-HHHHHHc-CCCEEEEeH
Confidence 3444568999999996 3334443333332222 123455555 6665 56 8888999 999988643
No 39
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}
Probab=42.19 E-value=56 Score=33.79 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCcEEEEec-cCCCCcccHHHHhcCCCc--cEEEEEeecCCC-ChhhHhhhCCCCcEEE
Q 007631 214 LDSHKLQAFSDAYSELQSSLSGLNVLIETY-FADVPAETYKILTSLKGV--TGFGFDLIRGTK-TLDLIKTEFPLGKYLF 289 (595)
Q Consensus 214 ~~~~~~~~~~~ay~~l~~~~~~~~i~l~ty-fg~~~~~v~~~l~~l~pv--d~i~lD~~~~~~-~l~~l~~~~p~~k~l~ 289 (595)
.++.+.+.|+...+. +... ++.|++|+- -|.....+++.|.+. ++ ..+.+--....+ +++..+..+..+-.|+
T Consensus 184 ~t~~q~~~f~aq~~~-A~~~-glPV~iH~~gr~~a~~e~l~iL~e~-g~~~~~vvi~H~~~s~~~~e~a~~~l~~G~~I~ 260 (364)
T 3k2g_A 184 FTAEEEKSLRGAARA-QVRT-GLPLMVHLPGWFRLAHRVLDLVEEE-GADLRHTVLCHMNPSHMDPVYQATLAQRGAFLE 260 (364)
T ss_dssp CCHHHHHHHHHHHHH-HHHH-CCCEEEECCTTSCCHHHHHHHHHHT-TCCGGGEEECCCGGGTTCHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHHHH-HHHH-CCeEEEecCCCCccHHHHHHHHHHc-CCCCCceEEECCCCCCCCHHHHHHHHhCCcEEE
Confidence 445566666655442 2211 245888862 233332236666554 43 333322222113 4554443222345677
Q ss_pred EeEeeCCC-------CCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 290 AGVVDGRN-------IWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 290 lGVVdgrn-------~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
++-+ |.. +|..+-++-.+.|+++.+..+.+||.|++||+.+
T Consensus 261 f~g~-gt~~~f~~~~~~~~~d~~ra~~l~~lv~~gp~drilleTD~p~~ 308 (364)
T 3k2g_A 261 FDMI-GMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVFVK 308 (364)
T ss_dssp ECCT-TCCCEETTTTEECCCHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred ecCC-cccccccccccccccHHHHHHHHHHHHHhCCcccEEEeCCCCCC
Confidence 6643 221 1233445677888888888888999999999874
No 40
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=40.95 E-value=69 Score=32.20 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEE
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD 267 (595)
++++..++|+++||+|-. +.+ .++++.+.+.. ++.+..+ |++. ++ +..+.+. +||.|++=
T Consensus 210 ea~eAl~aGaD~I~LDn~------~~~---~l~~av~~~~~---~v~ieaS---GGIt~~~-i~~~a~t-GVD~IsvG 270 (287)
T 3tqv_A 210 ELNQAIAAKADIVMLDNF------SGE---DIDIAVSIARG---KVALEVS---GNIDRNS-IVAIAKT-GVDFISVG 270 (287)
T ss_dssp HHHHHHHTTCSEEEEESC------CHH---HHHHHHHHHTT---TCEEEEE---SSCCTTT-HHHHHTT-TCSEEECS
T ss_pred HHHHHHHcCCCEEEEcCC------CHH---HHHHHHHhhcC---CceEEEE---CCCCHHH-HHHHHHc-CCCEEEEC
Confidence 344555789999999963 333 34444444432 3555555 7776 56 8889999 99998874
No 41
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=40.83 E-value=66 Score=30.72 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=40.7
Q ss_pred HHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 193 ~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
+.+.++|+++|++.++.-.. . ......+....+.+.. ++.+.+..+.-+..+ +..+... ++|++++--.
T Consensus 37 ~~~~~~Gad~i~v~d~~~~~--~--~~~~~~~~i~~i~~~~-~ipvi~~ggI~~~~~--~~~~~~~-Gad~V~lg~~ 105 (253)
T 1thf_D 37 KFYSEIGIDELVFLDITASV--E--KRKTMLELVEKVAEQI-DIPFTVGGGIHDFET--ASELILR-GADKVSINTA 105 (253)
T ss_dssp HHHHHTTCCEEEEEESSCSS--S--HHHHHHHHHHHHHTTC-CSCEEEESSCCSHHH--HHHHHHT-TCSEEEESHH
T ss_pred HHHHHcCCCEEEEECCchhh--c--CCcccHHHHHHHHHhC-CCCEEEeCCCCCHHH--HHHHHHc-CCCEEEEChH
Confidence 66678999999999863221 1 1111222333344332 356777755544333 5666778 8999988643
No 42
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=39.21 E-value=1.2e+02 Score=29.07 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCeEEeeccc--cccCCChHHHHHHHHHHHHHHcCCC-CCcEEEEeccCCCCcccHHHHhcCCCccEEE
Q 007631 189 KEVVAELKAAGATWIQFDEPT--LVLDLDSHKLQAFSDAYSELQSSLS-GLNVLIETYFADVPAETYKILTSLKGVTGFG 265 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~--L~~d~~~~~~~~~~~ay~~l~~~~~-~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~ 265 (595)
.+.++.+.++|++|||+|.-- ++..++. .. ...+.+.+... +..+|+-++ +...- ++.+.+. ++|+++
T Consensus 20 ~~~i~~~~~~Gad~ihldi~DG~fvp~~~~-g~----~~v~~lr~~~~~~~~vhlmv~--dp~~~-i~~~~~a-Gadgv~ 90 (230)
T 1tqj_A 20 GEEIKAVDEAGADWIHVDVMDGRFVPNITI-GP----LIVDAIRPLTKKTLDVHLMIV--EPEKY-VEDFAKA-GADIIS 90 (230)
T ss_dssp HHHHHHHHHTTCSEEEEEEEBSSSSSCBCB-CH----HHHHHHGGGCCSEEEEEEESS--SGGGT-HHHHHHH-TCSEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEecCCCcchhh-hH----HHHHHHHhhcCCcEEEEEEcc--CHHHH-HHHHHHc-CCCEEE
Confidence 356777888999999999720 0001110 11 12222322111 245555543 22333 6778888 999996
Q ss_pred EEee
Q 007631 266 FDLI 269 (595)
Q Consensus 266 lD~~ 269 (595)
+=..
T Consensus 91 vh~e 94 (230)
T 1tqj_A 91 VHVE 94 (230)
T ss_dssp EECS
T ss_pred ECcc
Confidence 6544
No 43
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=39.08 E-value=69 Score=32.06 Aligned_cols=63 Identities=8% Similarity=0.045 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEE
Q 007631 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD 267 (595)
++++..++|+++|++|- ++.+++....+..... .+++++.++ |++. ++ +..+.+. +||.|.+=
T Consensus 206 ea~eal~aGaD~I~LDn------~~~~~~~~~v~~l~~~---~~~v~ieaS---GGIt~~~-i~~~a~t-GVD~isvG 269 (284)
T 1qpo_A 206 QLDAVLPEKPELILLDN------FAVWQTQTAVQRRDSR---APTVMLESS---GGLSLQT-AATYAET-GVDYLAVG 269 (284)
T ss_dssp HHHHHGGGCCSEEEEET------CCHHHHHHHHHHHHHH---CTTCEEEEE---SSCCTTT-HHHHHHT-TCSEEECG
T ss_pred HHHHHHHcCCCEEEECC------CCHHHHHHHHHHhhcc---CCCeEEEEE---CCCCHHH-HHHHHhc-CCCEEEEC
Confidence 45566678999999996 3334433333332222 123556666 7776 56 8899999 99998743
No 44
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=36.69 E-value=67 Score=30.38 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCeEEeec---cccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEE
Q 007631 189 KEVVAELKAAGATWIQFDE---PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFG 265 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDE---P~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~ 265 (595)
.+.++.+.++|++|||++. |+.- ..+ ...+.+ +.|.+.. +..+.++.++-+..+. ++.+.+. ++|+++
T Consensus 26 ~~~i~~~~~~G~d~i~l~~~dg~f~~-~~~-~~~~~i----~~l~~~~-~~~~~v~l~vnd~~~~-v~~~~~~-Gad~v~ 96 (230)
T 1rpx_A 26 GEQVKAIEQAGCDWIHVDVMDGRFVP-NIT-IGPLVV----DSLRPIT-DLPLDVHLMIVEPDQR-VPDFIKA-GADIVS 96 (230)
T ss_dssp HHHHHHHHHTTCCCEEEEEEBSSSSS-CBC-CCHHHH----HHHGGGC-CSCEEEEEESSSHHHH-HHHHHHT-TCSEEE
T ss_pred HHHHHHHHHCCCCEEEEeeccCCccc-ccc-cCHHHH----HHHHhcc-CCcEEEEEEecCHHHH-HHHHHHc-CCCEEE
Confidence 3456777889999999974 3321 111 112222 2232221 1345566665543233 6677888 999998
Q ss_pred EEee
Q 007631 266 FDLI 269 (595)
Q Consensus 266 lD~~ 269 (595)
+-..
T Consensus 97 vh~~ 100 (230)
T 1rpx_A 97 VHCE 100 (230)
T ss_dssp EECS
T ss_pred EEec
Confidence 7765
No 45
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0
Probab=36.08 E-value=1.2e+02 Score=30.71 Aligned_cols=144 Identities=10% Similarity=0.013 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHH-HHcCCCeEEeecccccc-CCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcC
Q 007631 182 DKIIPVYKEVVAEL-KAAGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSL 258 (595)
Q Consensus 182 ~~L~~aY~~~l~~L-~~aG~~~IQiDEP~L~~-d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l 258 (595)
++|++.+..+|.+. ..-|++-=.| |-.+.. ..++.+.+.|+...+.-.. . ++.|++|+--|.-. +. ++.|.+.
T Consensus 129 e~l~~~~~~ei~~Gi~~t~vkaGvI-EiGld~~~~~~~q~~~f~aq~~~A~~-~-glPViiH~r~g~~a~~~-l~iL~e~ 204 (330)
T 3pnz_A 129 DKLTEFVVNEVENGLEGTPYKAGQV-KFGTGYNMITPLEEKTIRAVARAHHE-T-KAPIHSHTEAGTMALEQ-IEILKQE 204 (330)
T ss_dssp HHHHHHHHHHHHTCSTTSSCCEEEE-EEECBTTBCCHHHHHHHHHHHHHHHH-H-CCCEEEECGGGCCHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCcCcCcCeE-EEEcCCCCCCHHHHHHHHHHHHHHHH-H-CCeEEEeCCCCcChHHH-HHHHHHc
Confidence 45666555555443 2234443222 433332 2445566666665543222 1 24588887654322 33 6666554
Q ss_pred CCc--cEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcc
Q 007631 259 KGV--TGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (595)
Q Consensus 259 ~pv--d~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h 332 (595)
++ ..+.+..+...++++..+..+..+-.|+++-+ +..... .-++..+.|+++.+..+.|||.+++||+..+
T Consensus 205 -~~~~~~vvi~H~~~s~~~e~a~~~l~~G~~i~~~g~-~t~~~~-~~~~~~~~l~~lv~~g~~drilleTD~p~~~ 277 (330)
T 3pnz_A 205 -NIPLEYLSIGHMDRNLDPYYHKQVAKTGAFMSFDGI-AKIKYA-PESARIAAILYLVSEGFEDQILVSGDTARKT 277 (330)
T ss_dssp -TCCGGGEEETTGGGSCCHHHHHHHHTTTCEEEECCT-TCTTTC-CHHHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred -CCCCCeEEEecCCCCCCHHHHHHHHHcCcEEEEccC-cccCCC-ChHHHHHHHHHHHHcCCCCeEEEeCCCCCCC
Confidence 44 34444433212456655443334556776643 111111 1244566777777777789999999999753
No 46
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=35.95 E-value=80 Score=32.22 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=39.1
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEE
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFD 267 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD 267 (595)
+++..++|++.|++|-. +. +.++++-+.+. ++++|..+ |++. ++ +..+.+. +||.|++=
T Consensus 244 a~eAl~aGaD~I~LDn~------~~---~~l~~av~~l~---~~v~ieaS---GGIt~~~-I~~~a~t-GVD~isvG 303 (320)
T 3paj_A 244 LEEAISAGADIIMLDNF------SL---EMMREAVKINA---GRAALENS---GNITLDN-LKECAET-GVDYISVG 303 (320)
T ss_dssp HHHHHHTTCSEEEEESC------CH---HHHHHHHHHHT---TSSEEEEE---SSCCHHH-HHHHHTT-TCSEEECT
T ss_pred HHHHHHcCCCEEEECCC------CH---HHHHHHHHHhC---CCCeEEEE---CCCCHHH-HHHHHHc-CCCEEEEC
Confidence 34455789999999963 22 33444444443 24566666 8887 45 7888899 99988763
No 47
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=34.22 E-value=3.5e+02 Score=26.78 Aligned_cols=128 Identities=18% Similarity=0.146 Sum_probs=70.9
Q ss_pred HHHHHHcCCCeEEe--ec-cccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 192 VAELKAAGATWIQF--DE-PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 192 l~~L~~aG~~~IQi--DE-P~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
++.+.+.|++.|.| .| |.+. .+.+.+.++.+.+. .+.+++--|...+..+..|.+. +++.+.+.+
T Consensus 93 i~~~~~~g~~~i~~~gGe~p~~~-------~~~~~~li~~i~~~----~~~i~~s~g~l~~e~l~~L~~a-g~~~v~i~l 160 (348)
T 3iix_A 93 ARLAVQFGAKTIVLQSGEDPYXM-------PDVISDIVKEIKKM----GVAVTLSLGEWPREYYEKWKEA-GADRYLLRH 160 (348)
T ss_dssp HHHHHHTTCSEEEEEESCCGGGT-------THHHHHHHHHHHTT----SCEEEEECCCCCHHHHHHHHHH-TCCEEECCC
T ss_pred HHHHHHCCCCEEEEEeCCCCCcc-------HHHHHHHHHHHHhc----CceEEEecCCCCHHHHHHHHHh-CCCEEeeee
Confidence 34456679886544 45 4332 13444555555432 3444444455654348888888 888888766
Q ss_pred ecC----------CCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccc
Q 007631 269 IRG----------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTA 334 (595)
Q Consensus 269 ~~~----------~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P 334 (595)
... ..+++.+.+. + ..+-.+..|++-|.. -++.+.+.+.++.+.+ ++.+.+.++|=...-.+|
T Consensus 161 et~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p--~et~e~~~~~~~~l~~-l~~~~i~i~~~~p~~gt~ 237 (348)
T 3iix_A 161 ETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLP--GQTIDDLVDDLLFLKE-HDFDMVGIGPFIPHPDTP 237 (348)
T ss_dssp BCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCT--TCCHHHHHHHHHHHHH-HTCSEECCEECCCCTTST
T ss_pred eeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCC--CCCHHHHHHHHHHHHh-cCCCEEeeeeeecCCCCC
Confidence 531 2344433321 1 124568888888863 2566666666666544 455667766644443344
No 48
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=32.71 E-value=76 Score=32.08 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=38.6
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEEEe
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~lD~ 268 (595)
+++..++|++.|++|-. +. +.++++.+.+. ++++|..+ |++. ++ +..+.+. +||.|++=.
T Consensus 222 ~~eAl~aGaD~I~LDn~------~~---~~l~~av~~i~---~~v~ieaS---GGI~~~~-i~~~a~t-GVD~isvG~ 282 (298)
T 3gnn_A 222 LRTALAHGARSVLLDNF------TL---DMMRDAVRVTE---GRAVLEVS---GGVNFDT-VRAIAET-GVDRISIGA 282 (298)
T ss_dssp HHHHHHTTCEEEEEESC------CH---HHHHHHHHHHT---TSEEEEEE---SSCSTTT-HHHHHHT-TCSEEECGG
T ss_pred HHHHHHcCCCEEEECCC------CH---HHHHHHHHHhC---CCCeEEEE---cCCCHHH-HHHHHHc-CCCEEEECC
Confidence 45555789999999963 22 33444444342 23455555 7776 55 8888899 999887653
No 49
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=32.66 E-value=2.4e+02 Score=28.30 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=73.4
Q ss_pred HHHHHHcCCCeEEe--ec-cccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 192 VAELKAAGATWIQF--DE-PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 192 l~~L~~aG~~~IQi--DE-P~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
++++.+.|++.|-| .| |.+..+ .+.+.+.++.+.... ++.+.+ .-|...+..+..|.+. +++.+.+.+
T Consensus 100 ~~~~~~~G~~~i~l~gGe~p~~~~~-----~~~~~~l~~~ik~~~-~i~i~~--s~g~~~~e~l~~L~~a-G~~~i~i~l 170 (350)
T 3t7v_A 100 CKTLKGAGFHMVDLTMGEDPYYYED-----PNRFVELVQIVKEEL-GLPIMI--SPGLMDNATLLKAREK-GANFLALYQ 170 (350)
T ss_dssp HHHHTTSCCSEEEEEECCCHHHHHS-----THHHHHHHHHHHHHH-CSCEEE--ECSSCCHHHHHHHHHT-TEEEEECCC
T ss_pred HHHHHHCCCCEEEEeeCCCCccccC-----HHHHHHHHHHHHhhc-CceEEE--eCCCCCHHHHHHHHHc-CCCEEEEee
Confidence 34556789986544 45 643211 233344444443211 244443 3455553338888888 888887654
Q ss_pred ecC----------CCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCcccc
Q 007631 269 IRG----------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTA 334 (595)
Q Consensus 269 ~~~----------~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~P 334 (595)
... ..+++.+.+. + ..+-.+..|++=|- -++.+++.+.++.+.+ ++.+.+.+.+=.+...+|
T Consensus 171 Et~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl---get~e~~~~~l~~l~~-l~~~~v~~~~f~p~~gT~ 246 (350)
T 3t7v_A 171 ETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGV---GNDIESTILSLRGMST-NDPDMVRVMTFLPQEGTP 246 (350)
T ss_dssp BCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESS---SCCHHHHHHHHHHHHH-TCCSEEEEEECCCCTTST
T ss_pred ecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeec---CCCHHHHHHHHHHHHh-CCCCEEEecceeeCCCCc
Confidence 321 2333333221 0 12345888888887 4788888888877765 566778877655444444
Q ss_pred c
Q 007631 335 V 335 (595)
Q Consensus 335 ~ 335 (595)
.
T Consensus 247 l 247 (350)
T 3t7v_A 247 L 247 (350)
T ss_dssp T
T ss_pred C
Confidence 3
No 50
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=32.59 E-value=60 Score=30.61 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
.+.++.+.++|+++|+++++...........+.+. .+.+.. ++.+.++.+..+... +..+.+. ++|++++--
T Consensus 36 ~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~----~i~~~~-~ipvi~~g~i~~~~~--~~~~~~~-Gad~V~i~~ 107 (253)
T 1h5y_A 36 VEMAVRYEEEGADEIAILDITAAPEGRATFIDSVK----RVAEAV-SIPVLVGGGVRSLED--ATTLFRA-GADKVSVNT 107 (253)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHH----HHHHHC-SSCEEEESSCCSHHH--HHHHHHH-TCSEEEESH
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHH----HHHHhc-CCCEEEECCCCCHHH--HHHHHHc-CCCEEEECh
Confidence 34566778899999999976432111111223333 333222 245777654443333 4566677 889888753
No 51
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=31.38 E-value=1.8e+02 Score=27.86 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
++|+++.+.|++=|.+-- ....+.. -....+...|+.+.+- ++.+.+++.-...... ...+.+. |+ .+-++-.
T Consensus 96 ~el~~~~~~g~~Gi~~~~-~~~~~~~-~~~~~~~~~~~~a~~~--~lpv~iH~~~~~~~~~-~~~~~~~-pl-~~vi~H~ 168 (288)
T 2ffi_A 96 ATLAEMARLGVRGVRLNL-MGQDMPD-LTGAQWRPLLERIGEQ--GWHVELHRQVADIPVL-VRALQPY-GL-DIVIDHF 168 (288)
T ss_dssp HHHHHHHTTTCCEEECCC-SSSCCCC-TTSTTTHHHHHHHHHH--TCEEEECSCTTTHHHH-HHHHTTT-TC-CEEESGG
T ss_pred HHHHHHHHCCCeEEEEec-ccCCCCC-cccHHHHHHHHHHHHC--CCeEEEeechhhHHHH-HHHHHHC-CC-CEEEECC
Confidence 567777778888775531 1110010 0113344455444431 2446665442222232 5566667 73 3544433
Q ss_pred cCCC--------ChhhHhhhCCCCcEEEEeE--eeCCCCC-CCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 270 RGTK--------TLDLIKTEFPLGKYLFAGV--VDGRNIW-ANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 270 ~~~~--------~l~~l~~~~p~~k~l~lGV--Vdgrn~w-~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
.... .++.+.. +-....+.+++ +-..+.+ ..+.......++.+.+.+|++||..++|++..
T Consensus 169 g~~~~~~~~~~~~~~~~~~-l~~~~n~y~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~g~drll~gSD~P~~ 240 (288)
T 2ffi_A 169 GRPDARRGLGQPGFAELLT-LSGRGKVWVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSDWPHT 240 (288)
T ss_dssp GSCCTTSCTTCTTHHHHTT-CCCCSCEEEEEECGGGSSSCHHHHHHHHHHHHHHHHHHTCGGGEEEECCTTCT
T ss_pred CCCCCCCCCCChhHHHHHH-HHhCCCEEEEeCcchhhccccCCCHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 2211 1344433 32222344443 1111111 01123344678888888899999999999875
No 52
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=31.19 E-value=1.1e+02 Score=31.76 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhc--CCCccEEEEEeecCCCChhhHhhhC-CCCcEEEE
Q 007631 215 DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTS--LKGVTGFGFDLIRGTKTLDLIKTEF-PLGKYLFA 290 (595)
Q Consensus 215 ~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~--l~pvd~i~lD~~~~~~~l~~l~~~~-p~~k~l~l 290 (595)
++.+.+.|....+. +... ++.|++|+--|.-. +. ++.|.+ . +...+.+....+.++++...+.+ ..+-.|++
T Consensus 164 t~~Q~~~f~aq~~~-A~e~-glPViiH~r~gr~a~d~-l~iL~e~g~-~~~~vvi~H~~~~~~~~~a~~~l~~~G~yI~f 239 (363)
T 3ovg_A 164 DRLELKALEVAART-SILT-GCPILVHTQLGTMALEV-AKHLIGFGA-NPDKIQISHLNKNPDKYYYEKVIKETGVTLCF 239 (363)
T ss_dssp EHHHHHHHHHHHHH-HHHH-CCCEEEEEETTCSHHHH-HHHHHHHTC-CGGGEEEECGGGSCCHHHHHHHHHHHCCEEEE
T ss_pred CHHHHHHHHHHHHH-HHHh-CCEEEEeCCCCCCHHHH-HHHHHhcCC-CCCcEEEEcCCCCCCHHHHHHHHHHCCcEEEE
Confidence 34456666655542 2211 24588887544211 43 666654 4 44556665555434553322212 12446666
Q ss_pred eEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCc
Q 007631 291 GVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (595)
Q Consensus 291 GVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~ 331 (595)
+=+ ++..+..+ ++-.+.|+++.+..+.|||.+++||+.+
T Consensus 240 ~g~-~~~~~~~~-~~ra~~l~~lv~~~p~drILleTDap~~ 278 (363)
T 3ovg_A 240 DGP-DRVKYYPD-SLLAENIKYLVDKGLQKHITLSLDAGRI 278 (363)
T ss_dssp CCT-TCTTTCCH-HHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred CCe-eccccCCh-hHHHHHHHHHHHhcCCCeEEEeCCCCCC
Confidence 632 11222222 3456778888887888999999999864
No 53
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=28.49 E-value=54 Score=31.37 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
++++.+.++|+++|++-++.-.. .. .....+....+.+.. .+.+++..++-+..+ +..+... ++|++++--.
T Consensus 35 ~~a~~~~~~Gad~i~v~d~~~~~-~~---~~~~~~~i~~i~~~~-~iPvi~~Ggi~~~~~--~~~~~~~-Gad~V~lg~~ 106 (252)
T 1ka9_F 35 EAARAYDEAGADELVFLDISATH-EE---RAILLDVVARVAERV-FIPLTVGGGVRSLED--ARKLLLS-GADKVSVNSA 106 (252)
T ss_dssp HHHHHHHHHTCSCEEEEECCSST-TC---HHHHHHHHHHHHTTC-CSCEEEESSCCSHHH--HHHHHHH-TCSEEEECHH
T ss_pred HHHHHHHHcCCCEEEEEcCCccc-cC---ccccHHHHHHHHHhC-CCCEEEECCcCCHHH--HHHHHHc-CCCEEEEChH
Confidence 34556678899999997763221 11 111122233344433 367888766554433 5667778 8999998643
Q ss_pred c--CCCChhhHhhhCC
Q 007631 270 R--GTKTLDLIKTEFP 283 (595)
Q Consensus 270 ~--~~~~l~~l~~~~p 283 (595)
. ++..+..+...++
T Consensus 107 ~l~~p~~~~~~~~~~~ 122 (252)
T 1ka9_F 107 AVRRPELIRELADHFG 122 (252)
T ss_dssp HHHCTHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHHcC
Confidence 2 3333444443344
No 54
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=27.72 E-value=67 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEee
Q 007631 183 KIIPVYKEVVAELKAAGATWIQFD 206 (595)
Q Consensus 183 ~L~~aY~~~l~~L~~aG~~~IQiD 206 (595)
.|-.+..++=+.|+.+|++.|||-
T Consensus 30 eleralqelekalaragarnvqit 53 (96)
T 2jvf_A 30 ELERALQELEKALARAGARNVQIT 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhccccceEEE
Confidence 466677888899999999999996
No 55
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=27.22 E-value=1e+02 Score=30.41 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCC--ChHHHH--------------HHHHHHHHHHcCCCCCcEEEEeccCCC---C
Q 007631 188 YKEVVAELKAAGATWIQFDEPTLVLDL--DSHKLQ--------------AFSDAYSELQSSLSGLNVLIETYFADV---P 248 (595)
Q Consensus 188 Y~~~l~~L~~aG~~~IQiDEP~L~~d~--~~~~~~--------------~~~~ay~~l~~~~~~~~i~l~tyfg~~---~ 248 (595)
..++++.|.++|+++|.|+=|+ .|. +...++ .+-+..+.+.+......+++-+|+..+ +
T Consensus 34 ~~~~~~~l~~~GaD~iElgiPf--SDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g 111 (267)
T 3vnd_A 34 SLKIIQTLVDNGADALELGFPF--SDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG 111 (267)
T ss_dssp HHHHHHHHHHTTCSSEEEECCC--SCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEECCCC--CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh
Confidence 4678889999999999999775 232 111121 112222333322123568888897531 1
Q ss_pred -cccHHHHhcCCCccEEEE
Q 007631 249 -AETYKILTSLKGVTGFGF 266 (595)
Q Consensus 249 -~~v~~~l~~l~pvd~i~l 266 (595)
+..++.+.+. +|||+-+
T Consensus 112 ~e~f~~~~~~a-Gvdgvii 129 (267)
T 3vnd_A 112 IDEFYTKAQAA-GVDSVLI 129 (267)
T ss_dssp HHHHHHHHHHH-TCCEEEE
T ss_pred HHHHHHHHHHc-CCCEEEe
Confidence 2236667788 8999554
No 56
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=26.69 E-value=1.7e+02 Score=27.01 Aligned_cols=95 Identities=8% Similarity=0.073 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCeEEeec--cccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEE
Q 007631 189 KEVVAELKAAGATWIQFDE--PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDE--P~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~l 266 (595)
.+.++.+.++|++|||+|. -.+....+ .-.+.+++ |.+.. +..+.++.+.-+..+. .+.+.+. ++|++.+
T Consensus 19 ~~~~~~~~~~G~~~i~~~~~dg~~~~~~~-~g~~~i~~----i~~~~-~~~~~v~l~v~d~~~~-i~~~~~~-gad~v~v 90 (220)
T 2fli_A 19 ASELARIEETDAEYVHIDIMDGQFVPNIS-FGADVVAS----MRKHS-KLVFDCHLMVVDPERY-VEAFAQA-GADIMTI 90 (220)
T ss_dssp HHHHHHHHHTTCCEEEEEEEBSSSSSCBC-BCHHHHHH----HHTTC-CSEEEEEEESSSGGGG-HHHHHHH-TCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCCccc-cCHHHHHH----HHHhC-CCCEEEEEeecCHHHH-HHHHHHc-CCCEEEE
Confidence 3566777789999999995 11111111 01222222 22211 2345566554444334 6778888 9999977
Q ss_pred EeecCCCChhhHhhhC-CCCcEEEEeE
Q 007631 267 DLIRGTKTLDLIKTEF-PLGKYLFAGV 292 (595)
Q Consensus 267 D~~~~~~~l~~l~~~~-p~~k~l~lGV 292 (595)
-.... +....+.+.+ ..++.+++.+
T Consensus 91 h~~~~-~~~~~~~~~~~~~g~~i~~~~ 116 (220)
T 2fli_A 91 HTEST-RHIHGALQKIKAAGMKAGVVI 116 (220)
T ss_dssp EGGGC-SCHHHHHHHHHHTTSEEEEEE
T ss_pred ccCcc-ccHHHHHHHHHHcCCcEEEEE
Confidence 65443 3332222211 1245666665
No 57
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=26.08 E-value=58 Score=31.47 Aligned_cols=71 Identities=10% Similarity=-0.055 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEe
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~ 268 (595)
+.++.+.++|+++|++-++.-.........+.+.+ +.+.. .+.+++..++.+..+ +..+... ++|++++--
T Consensus 34 ~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~----i~~~~-~iPvi~~ggi~~~~~--i~~~~~~-Gad~v~lg~ 104 (266)
T 2w6r_A 34 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRF----VRPLT-TLPIIASGGAGKMEH--FLEAFLA-GADKALAAS 104 (266)
T ss_dssp HHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHH----HGGGC-CSCEEEESCCCSTHH--HHHHHHH-TCSEEECCC
T ss_pred HHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHH----HHHhc-CCCEEEECCCCCHHH--HHHHHHc-CCcHhhhhH
Confidence 44566678899999997654321111112333333 33322 356888766665544 5566678 899988863
No 58
>1ete_A FLT3 ligand; four-helix bundle, cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qs7_A* 3qs9_A
Probab=25.94 E-value=40 Score=29.18 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=11.1
Q ss_pred eCCCCCcccccc
Q 007631 325 STSCSLLHTAVD 336 (595)
Q Consensus 325 spsCgL~h~P~~ 336 (595)
+|+|+|.|.|++
T Consensus 1 ~pdCsF~~SPIS 12 (134)
T 1ete_A 1 TQDCSFQHSPIS 12 (134)
T ss_dssp CCCCCCSSCCCC
T ss_pred CCCCccCCCcch
Confidence 589999999998
No 59
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=24.37 E-value=87 Score=30.73 Aligned_cols=136 Identities=10% Similarity=0.014 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEee
Q 007631 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~ 269 (595)
++|+++.+.|+.=|-++-- .........+.+...++.+..- ++.+.+++.-..+.+. .+.+.+. |+ .+-++-.
T Consensus 109 ~eL~~l~~~gv~Gi~l~~~--~~~~~~~~~~~~~~~~~~a~~~--glpv~iH~~~~~l~~~-~~~l~~~-p~-~~Vi~H~ 181 (294)
T 4i6k_A 109 NELVNLKAQGIVGVRLNLF--GLNLPALNTPDWQKFLRNVESL--NWQVELHAPPKYLVQL-LPQLNEY-SF-DVVIDHF 181 (294)
T ss_dssp HHHHHHHTTTEEEEEEECT--TSCCCCSSSHHHHHHHHHHHHT--TCEEEEECCHHHHHHH-HHHHTTS-SS-CEEESGG
T ss_pred HHHHHHHHCCCcEEEeccC--CCCCCCcccHHHHHHHHHHHHc--CCEEEEeeCcchHHHH-HHHHHHC-CC-CEEEECC
Confidence 5677788889888887621 1111111225666666666542 2456666432222232 5566677 84 3555544
Q ss_pred cCCC--------ChhhHhhhCCCCcEEEEeE--eeCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEeCCCCCccc
Q 007631 270 RGTK--------TLDLIKTEFPLGKYLFAGV--VDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHT 333 (595)
Q Consensus 270 ~~~~--------~l~~l~~~~p~~k~l~lGV--Vdgrn~w~ed~~~~~~~i~~~~~~~~~~rl~vspsCgL~h~ 333 (595)
.++. .++.+.. +-+...+.+++ +-..+.+..........++++.+.+|++||+..|||+....
T Consensus 182 g~p~~~~g~~~~~~~~~~~-l~~~~nv~~k~Sg~~~~~~~~~~~~~~~~~l~~~~~~~g~dRll~gSD~P~~~~ 254 (294)
T 4i6k_A 182 GRVDPVKGIEDPDYQKFLS-LLNVKQHWIKVSGFYRLGATPSNINIAQQAYNIFKEKGFLHKLIWGSDWPHTQH 254 (294)
T ss_dssp GCCCTTTCTTCHHHHHHHH-HCCTTTEEEECCCGGGSSSTTHHHHHHHHHHHHHHHHTCGGGEECCCCBTCTTC
T ss_pred CCCCCCCCCCCHHHHHHHH-HHhCCCEEEEecccccccccCCCchhhHHHHHHHHHHhCcccEEEeCCCCCCCC
Confidence 3321 1233332 22212344443 11111111122344567888888899999999999998753
No 60
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=24.11 E-value=1.5e+02 Score=29.30 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=35.5
Q ss_pred HcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEE
Q 007631 197 AAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGF 266 (595)
Q Consensus 197 ~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~l 266 (595)
++|+++|++|- .+.+.+....+ .+....+.++|..+ |+++ ++ +..+.+. ++|++++
T Consensus 200 ~aGaD~I~ld~------~~~~~l~~~v~---~l~~~~~~~~i~As---GGI~~~n-i~~~~~a-GaD~i~v 256 (273)
T 2b7n_A 200 NAGADIVMCDN------LSVLETKEIAA---YRDAHYPFVLLEAS---GNISLES-INAYAKS-GVDAISV 256 (273)
T ss_dssp HHTCSEEEEET------CCHHHHHHHHH---HHHHHCTTCEEEEE---SSCCTTT-HHHHHTT-TCSEEEC
T ss_pred HcCCCEEEECC------CCHHHHHHHHH---HhhccCCCcEEEEE---CCCCHHH-HHHHHHc-CCcEEEE
Confidence 57999999994 23334433333 33322233566666 6665 56 8888898 9998875
No 61
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=23.85 E-value=5.6e+02 Score=25.68 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=72.7
Q ss_pred HHHHHHHcCCCeEEee----ccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEE
Q 007631 191 VVAELKAAGATWIQFD----EPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (595)
Q Consensus 191 ~l~~L~~aG~~~IQiD----EP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~l 266 (595)
+++.+.+.|++.|-|- ||.. . ..+.+.+..+.+.+. .+.+.+ --|.+.+..+..|.+. +++.+.+
T Consensus 107 ~~~~~~~~g~~~i~~~gg~~~p~~---~---~~~~l~~ll~~ik~~--g~~i~~--t~G~l~~e~l~~L~~a-Gvd~v~i 175 (369)
T 1r30_A 107 SARKAKAAGSTRFCMGAAWKNPHE---R---DMPYLEQMVQGVKAM--GLEACM--TLGTLSESQAQRLANA-GLDYYNH 175 (369)
T ss_dssp HHHHHHHTTCSEEEEEECCSSCCT---T---THHHHHHHHHHHHHT--TSEEEE--ECSSCCHHHHHHHHHH-CCCEEEC
T ss_pred HHHHHHHcCCcEEEEEeCCCCCCc---C---CHHHHHHHHHHHHHc--CCeEEE--ecCCCCHHHHHHHHHC-CCCEEee
Confidence 3445567898876652 3432 1 234444555555432 245554 2365653348888888 8999998
Q ss_pred EeecC---------CCChhhHhhh---C-CCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcC--CCcEEEeCCCCCc
Q 007631 267 DLIRG---------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG--KDKVVVSTSCSLL 331 (595)
Q Consensus 267 D~~~~---------~~~l~~l~~~---~-p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~--~~rl~vspsCgL~ 331 (595)
++..+ ..+++.+.+. + ..+..+..++|-|-+ ++.+++.+.++.+.+ ++ ++.+.+.+-...-
T Consensus 176 ~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~---et~ed~~~~l~~l~~-l~~~~~~i~~~~l~p~~ 251 (369)
T 1r30_A 176 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG---ETVKDRAGLLLQLAN-LPTPPESVPINMLVKVK 251 (369)
T ss_dssp CCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSS---CCHHHHHHHHHHHHS-SSSCCSEEEEEECCCCT
T ss_pred cCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeCC---CCHHHHHHHHHHHHh-hcCCCCEEEeeeeeecC
Confidence 87642 1233332221 1 012357788887763 667777777777755 44 4677776654443
Q ss_pred ccc
Q 007631 332 HTA 334 (595)
Q Consensus 332 h~P 334 (595)
..|
T Consensus 252 gT~ 254 (369)
T 1r30_A 252 GTP 254 (369)
T ss_dssp TST
T ss_pred CCc
Confidence 333
No 62
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}
Probab=23.70 E-value=1.2e+02 Score=28.07 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeec
Q 007631 445 DLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVH 488 (595)
Q Consensus 445 ~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe~~Gldvitd 488 (595)
+|-..|.++-.|.++.+|+.+.-+..+..+..-=.-+|+|+|+=
T Consensus 130 eL~~~R~qlls~~l~~dE~~~l~~~~~~~id~gn~~l~ldlvvR 173 (184)
T 3a98_A 130 DLMEWRSQLLSGTLPKDELKELKQKVTSKIDYGNKILELDLIVR 173 (184)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 46677888888999999999999999999988888899999964
No 63
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=23.50 E-value=1.5e+02 Score=27.36 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEE--eccCCCCcccHHHHhcCCCccEEEE
Q 007631 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE--TYFADVPAETYKILTSLKGVTGFGF 266 (595)
Q Consensus 189 ~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~--tyfg~~~~~v~~~l~~l~pvd~i~l 266 (595)
.+.++.+.+.|+++||++++. . ...+.+++..+.. +..+++. +... .+. ++...+. ++|++++
T Consensus 22 ~~~~~~~~~~G~~~i~l~~~~----~--~~~~~i~~i~~~~-----~~~l~vg~g~~~~--~~~-i~~a~~~-Gad~V~~ 86 (212)
T 2v82_A 22 LAHVGAVIDAGFDAVEIPLNS----P--QWEQSIPAIVDAY-----GDKALIGAGTVLK--PEQ-VDALARM-GCQLIVT 86 (212)
T ss_dssp HHHHHHHHHHTCCEEEEETTS----T--THHHHHHHHHHHH-----TTTSEEEEECCCS--HHH-HHHHHHT-TCCEEEC
T ss_pred HHHHHHHHHCCCCEEEEeCCC----h--hHHHHHHHHHHhC-----CCCeEEEeccccC--HHH-HHHHHHc-CCCEEEe
Confidence 456667778999999999873 1 1233333332222 1345552 2211 123 6677888 9999984
Q ss_pred E
Q 007631 267 D 267 (595)
Q Consensus 267 D 267 (595)
.
T Consensus 87 ~ 87 (212)
T 2v82_A 87 P 87 (212)
T ss_dssp S
T ss_pred C
Confidence 3
No 64
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=23.39 E-value=84 Score=30.73 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCcEEEeCCCCCccccc-ccccccCCcHHHHhhhhhHHhHHHHHH
Q 007631 309 TLQDLAGTVGKDKVVVSTSCSLLHTAV-DLENETKLDQEIKSWLAFAAQKVVEVN 362 (595)
Q Consensus 309 ~i~~~~~~~~~~rl~vspsCgL~h~P~-~~~~E~~l~~~~~~~laFA~qKl~El~ 362 (595)
.++++.+.+|.|||.+-|||+.+ |+ ...+| |. .+....+++.|+.
T Consensus 178 ~~~~~v~~ip~drlLlETD~P~~--~~rg~~n~---P~----~v~~v~~~iA~~~ 223 (254)
T 3gg7_A 178 KGAALIRSMPRDRVLTETDGPFL--ELDGQAAL---PW----DVKSVVEGLSKIW 223 (254)
T ss_dssp HHHHHHHHSCGGGEEECCCTTTS--EETTEECC---GG----GHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEeCCCCcc--ccCCCCCC---HH----HHHHHHHHHHHHh
Confidence 55677788899999999999986 43 22222 22 2344556666653
No 65
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=23.29 E-value=1.6e+02 Score=29.46 Aligned_cols=61 Identities=11% Similarity=0.226 Sum_probs=37.8
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEeccCCCC-cccHHHHhcCCCccEEEE
Q 007631 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGF 266 (595)
Q Consensus 192 l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~-~~v~~~l~~l~pvd~i~l 266 (595)
+.+..++|+++|++|- .+.+++....+ .+....+.++|..+ |+++ ++ +..+.+. ++|+|++
T Consensus 210 ~~~A~~aGaD~I~ld~------~~~~~l~~~v~---~l~~~~~~~~I~AS---GGIt~~n-i~~~~~a-GaD~i~v 271 (299)
T 2jbm_A 210 AVQAAEAGADLVLLDN------FKPEELHPTAT---VLKAQFPSVAVEAS---GGITLDN-LPQFCGP-HIDVISM 271 (299)
T ss_dssp HHHHHHTTCSEEEEES------CCHHHHHHHHH---HHHHHCTTSEEEEE---SSCCTTT-HHHHCCT-TCCEEEC
T ss_pred HHHHHHcCCCEEEECC------CCHHHHHHHHH---HhhccCCCeeEEEE---CCCCHHH-HHHHHHC-CCCEEEE
Confidence 3334468999999984 23334433333 33322234566666 6665 56 8888898 9988876
No 66
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=22.07 E-value=4.5e+02 Score=24.55 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCCeEEeec
Q 007631 190 EVVAELKAAGATWIQFDE 207 (595)
Q Consensus 190 ~~l~~L~~aG~~~IQiDE 207 (595)
+.++.+.++|++|||+|.
T Consensus 23 ~~i~~~~~~Gad~i~l~i 40 (228)
T 1h1y_A 23 AEADRMVRLGADWLHMDI 40 (228)
T ss_dssp HHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEE
Confidence 456677889999999995
No 67
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=21.82 E-value=69 Score=23.00 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=15.8
Q ss_pred HHHHHhcCCCCHHHHHHHH
Q 007631 449 VRREFKAKKISEDDYVKTI 467 (595)
Q Consensus 449 ar~~~~~g~i~~~e~~~~~ 467 (595)
.|.+.++|.|+++|+.+++
T Consensus 24 mR~AV~~G~iTQ~E~D~I~ 42 (51)
T 2xf7_A 24 LRVAVNAGDLTQEEADKIM 42 (51)
T ss_dssp HHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHH
Confidence 5677888999999998875
Done!