Query 007633
Match_columns 595
No_of_seqs 271 out of 2150
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 13:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00044 multi-copper oxidase- 100.0 5E-118 1E-122 970.4 63.0 542 25-566 21-568 (596)
2 PLN02991 oxidoreductase 100.0 8E-115 2E-119 940.2 61.0 525 12-557 9-535 (543)
3 PLN02354 copper ion binding / 100.0 4E-113 8E-118 933.2 60.8 536 13-563 6-549 (552)
4 PLN02792 oxidoreductase 100.0 6E-113 1E-117 927.0 59.3 515 26-558 11-529 (536)
5 PLN02835 oxidoreductase 100.0 3E-112 7E-117 924.9 61.1 514 23-557 21-536 (539)
6 KOG1263 Multicopper oxidases [ 100.0 4E-112 9E-117 913.4 58.3 529 21-559 18-562 (563)
7 PLN02168 copper ion binding / 100.0 3E-111 6E-116 914.2 60.4 511 28-555 23-544 (545)
8 TIGR03389 laccase laccase, pla 100.0 1E-100 2E-105 841.5 59.6 509 30-552 2-539 (539)
9 PLN02191 L-ascorbate oxidase 100.0 1E-100 3E-105 840.2 58.8 526 11-558 4-567 (574)
10 PLN02604 oxidoreductase 100.0 2.8E-99 6E-104 832.1 60.9 524 13-556 6-565 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 9.2E-98 2E-102 817.9 57.8 502 31-553 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.3E-95 3E-100 798.5 55.0 490 32-538 9-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.4E-77 3E-82 655.2 48.7 429 32-534 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 1.3E-74 2.8E-79 627.7 44.6 442 31-534 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.5E-72 3.2E-77 606.7 43.3 404 33-536 47-470 (471)
16 COG2132 SufI Putative multicop 100.0 9.3E-58 2E-62 494.1 40.5 401 43-535 45-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.6E-48 3.5E-53 399.0 25.9 265 26-319 22-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 6.4E-37 1.4E-41 268.2 11.5 116 37-152 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 2.9E-29 6.2E-34 228.3 10.5 109 427-535 28-136 (138)
20 PF00394 Cu-oxidase: Multicopp 100.0 5.1E-28 1.1E-32 225.1 15.6 153 163-317 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 6.7E-19 1.5E-23 160.1 12.0 103 45-149 36-148 (148)
22 TIGR01480 copper_res_A copper- 99.6 8E-16 1.7E-20 169.5 11.8 100 48-149 483-587 (587)
23 TIGR02376 Cu_nitrite_red nitri 99.6 5.2E-13 1.1E-17 137.2 23.1 244 193-534 47-296 (311)
24 TIGR03096 nitroso_cyanin nitro 99.4 8.2E-13 1.8E-17 116.1 12.0 100 21-135 14-121 (135)
25 PRK10965 multicopper oxidase; 99.1 6.8E-09 1.5E-13 113.9 21.5 250 33-298 181-510 (523)
26 TIGR03389 laccase laccase, pla 99.0 2.8E-08 6E-13 110.3 20.9 234 194-519 23-264 (539)
27 PLN02835 oxidoreductase 99.0 3.4E-08 7.3E-13 108.9 20.5 219 194-517 49-277 (539)
28 PRK10883 FtsI repressor; Provi 99.0 3E-08 6.4E-13 107.9 19.3 221 50-298 209-455 (471)
29 PF07731 Cu-oxidase_2: Multico 98.9 1.6E-09 3.6E-14 98.2 6.3 90 61-151 33-137 (138)
30 PLN02354 copper ion binding / 98.9 8.9E-08 1.9E-12 105.8 20.0 230 194-519 47-284 (552)
31 PLN02168 copper ion binding / 98.9 1.3E-07 2.7E-12 104.2 20.7 220 194-509 46-267 (545)
32 PLN02792 oxidoreductase 98.9 1.2E-07 2.6E-12 104.3 20.3 225 194-517 36-268 (536)
33 PLN02991 oxidoreductase 98.9 1.1E-07 2.5E-12 104.4 19.9 221 194-516 48-276 (543)
34 PLN00044 multi-copper oxidase- 98.8 3.4E-07 7.4E-12 101.4 19.9 233 194-514 49-291 (596)
35 TIGR03390 ascorbOXfungal L-asc 98.7 1.2E-06 2.6E-11 97.1 21.1 241 194-518 28-282 (538)
36 COG2132 SufI Putative multicop 98.7 5.2E-07 1.1E-11 98.3 16.6 231 47-298 186-436 (451)
37 TIGR03388 ascorbase L-ascorbat 98.7 1.9E-06 4.2E-11 95.7 20.9 254 194-519 21-281 (541)
38 PLN02604 oxidoreductase 98.6 1.5E-06 3.2E-11 97.0 19.4 250 194-519 44-302 (566)
39 PRK02710 plastocyanin; Provisi 98.6 1.2E-06 2.6E-11 77.2 13.2 74 61-149 46-119 (119)
40 PF07732 Cu-oxidase_3: Multico 98.5 9E-08 2E-12 83.9 5.1 90 433-536 26-116 (117)
41 PLN02191 L-ascorbate oxidase 98.5 4.2E-06 9E-11 93.3 18.6 249 194-517 43-302 (574)
42 PF13473 Cupredoxin_1: Cupredo 98.4 1.3E-06 2.8E-11 75.1 7.7 70 62-148 35-104 (104)
43 TIGR02656 cyanin_plasto plasto 98.3 3.4E-06 7.4E-11 71.8 8.6 83 60-149 15-99 (99)
44 KOG1263 Multicopper oxidases [ 98.2 9.4E-05 2E-09 81.4 20.7 229 194-517 48-285 (563)
45 PF00127 Copper-bind: Copper b 98.1 7.6E-06 1.6E-10 69.6 6.6 77 61-149 16-99 (99)
46 PRK02888 nitrous-oxide reducta 98.0 2.5E-05 5.3E-10 85.6 10.1 97 43-151 534-635 (635)
47 PF00394 Cu-oxidase: Multicopp 97.9 4.8E-05 1E-09 70.7 8.8 92 432-534 59-156 (159)
48 TIGR03094 sulfo_cyanin sulfocy 97.9 0.00023 5E-09 65.2 12.4 98 51-152 73-188 (195)
49 TIGR02657 amicyanin amicyanin. 97.9 9.8E-05 2.1E-09 60.6 8.9 74 61-149 10-83 (83)
50 PF06525 SoxE: Sulfocyanin (So 97.8 0.00032 7E-09 65.7 12.0 101 51-152 74-189 (196)
51 TIGR03095 rusti_cyanin rusticy 97.6 0.00041 9E-09 63.3 9.0 88 433-533 52-147 (148)
52 TIGR02375 pseudoazurin pseudoa 97.5 0.00057 1.2E-08 59.5 8.5 76 61-152 14-90 (116)
53 TIGR03096 nitroso_cyanin nitro 97.3 0.00071 1.5E-08 60.0 7.4 61 433-520 61-121 (135)
54 TIGR02656 cyanin_plasto plasto 97.3 0.00093 2E-08 56.7 7.8 83 432-533 16-98 (99)
55 COG3794 PetE Plastocyanin [Ene 97.3 0.0011 2.5E-08 58.3 7.8 75 62-150 54-128 (128)
56 TIGR03102 halo_cynanin halocya 97.2 0.0023 5E-08 55.6 8.8 74 61-149 41-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 96.9 0.004 8.7E-08 53.3 7.5 63 433-524 35-97 (104)
58 PRK02888 nitrous-oxide reducta 96.3 0.017 3.6E-07 63.9 9.1 76 433-535 555-634 (635)
59 PF00127 Copper-bind: Copper b 95.7 0.094 2E-06 44.4 9.3 82 433-534 17-99 (99)
60 PRK02710 plastocyanin; Provisi 95.6 0.056 1.2E-06 47.5 7.9 71 434-533 48-118 (119)
61 TIGR02375 pseudoazurin pseudoa 94.8 0.13 2.8E-06 44.8 7.5 77 432-537 14-90 (116)
62 PF00116 COX2: Cytochrome C ox 94.0 0.32 7E-06 42.7 8.5 74 61-148 45-119 (120)
63 PF06525 SoxE: Sulfocyanin (So 94.0 0.79 1.7E-05 43.4 11.4 105 194-318 74-188 (196)
64 TIGR02657 amicyanin amicyanin. 93.8 0.28 6.1E-06 40.0 7.3 72 433-533 11-82 (83)
65 PF00116 COX2: Cytochrome C ox 93.6 0.71 1.5E-05 40.6 9.8 74 433-534 46-120 (120)
66 COG4454 Uncharacterized copper 93.4 0.28 6.1E-06 44.4 7.0 93 435-534 65-157 (158)
67 TIGR02695 azurin azurin. Azuri 93.4 0.38 8.2E-06 42.1 7.5 87 61-148 15-125 (125)
68 PRK10378 inactive ferrous ion 92.8 1.2 2.6E-05 46.8 11.7 78 58-152 40-119 (375)
69 TIGR03102 halo_cynanin halocya 92.3 1.2 2.5E-05 38.8 9.2 73 433-533 42-114 (115)
70 COG4454 Uncharacterized copper 92.1 0.46 1E-05 43.0 6.5 89 58-150 59-158 (158)
71 TIGR02866 CoxB cytochrome c ox 91.2 1.9 4.2E-05 41.5 10.4 78 61-152 116-194 (201)
72 TIGR02866 CoxB cytochrome c ox 89.8 1.2 2.7E-05 42.9 7.7 77 433-537 117-194 (201)
73 TIGR03079 CH4_NH3mon_ox_B meth 87.3 4.8 0.0001 41.6 10.1 85 33-123 248-354 (399)
74 COG1622 CyoA Heme/copper-type 85.0 3.2 6.9E-05 41.3 7.5 78 433-538 137-215 (247)
75 TIGR02695 azurin azurin. Azuri 84.1 6.4 0.00014 34.5 8.0 81 216-296 14-112 (125)
76 COG1622 CyoA Heme/copper-type 83.4 6.2 0.00013 39.3 8.7 78 62-153 137-215 (247)
77 COG4263 NosZ Nitrous oxide red 81.3 2.1 4.5E-05 45.3 4.6 77 63-149 559-636 (637)
78 COG3794 PetE Plastocyanin [Ene 81.1 9.5 0.00021 33.8 8.0 74 433-534 54-127 (128)
79 PF12690 BsuPI: Intracellular 80.4 15 0.00032 29.9 8.4 65 228-294 4-82 (82)
80 MTH00047 COX2 cytochrome c oxi 76.6 16 0.00034 35.0 8.8 76 434-537 117-193 (194)
81 MTH00140 COX2 cytochrome c oxi 74.4 11 0.00023 37.1 7.3 78 433-538 140-218 (228)
82 PTZ00047 cytochrome c oxidase 70.7 23 0.0005 32.7 7.8 76 434-537 74-150 (162)
83 PF10633 NPCBM_assoc: NPCBM-as 68.9 25 0.00054 28.0 7.0 66 222-297 1-76 (78)
84 TIGR01433 CyoA cytochrome o ub 68.1 17 0.00037 35.7 7.0 77 434-538 140-217 (226)
85 TIGR03094 sulfo_cyanin sulfocy 66.0 51 0.0011 30.9 9.1 96 433-535 85-186 (195)
86 PF12690 BsuPI: Intracellular 65.1 33 0.00072 27.8 7.0 33 97-129 40-79 (82)
87 PF07705 CARDB: CARDB; InterP 65.1 75 0.0016 25.9 10.1 68 221-298 14-85 (101)
88 MTH00129 COX2 cytochrome c oxi 62.0 30 0.00065 34.1 7.4 77 433-537 140-217 (230)
89 MTH00140 COX2 cytochrome c oxi 61.6 1.7E+02 0.0036 28.8 12.7 78 61-152 139-217 (228)
90 TIGR01432 QOXA cytochrome aa3 59.3 30 0.00064 33.8 6.9 77 434-538 131-208 (217)
91 PF04744 Monooxygenase_B: Mono 58.1 26 0.00056 36.5 6.3 70 48-123 249-335 (381)
92 MTH00185 COX2 cytochrome c oxi 58.0 48 0.001 32.6 8.1 77 433-537 140-217 (230)
93 MTH00098 COX2 cytochrome c oxi 57.5 48 0.001 32.6 8.0 77 433-537 140-217 (227)
94 PF14344 DUF4397: Domain of un 56.8 1.3E+02 0.0028 25.9 10.5 21 229-249 3-24 (122)
95 COG2967 ApaG Uncharacterized p 55.9 12 0.00027 32.2 3.1 48 74-121 34-87 (126)
96 MTH00008 COX2 cytochrome c oxi 55.3 47 0.001 32.7 7.6 78 433-538 140-218 (228)
97 PF05938 Self-incomp_S1: Plant 55.0 54 0.0012 28.0 7.1 71 73-152 2-72 (110)
98 PF01835 A2M_N: MG2 domain; I 54.9 38 0.00082 28.1 6.0 70 222-297 11-86 (99)
99 MTH00023 COX2 cytochrome c oxi 53.8 61 0.0013 32.1 8.2 78 433-538 151-229 (240)
100 MTH00117 COX2 cytochrome c oxi 53.3 63 0.0014 31.7 8.1 77 433-537 140-217 (227)
101 PF05506 DUF756: Domain of unk 51.6 63 0.0014 26.4 6.7 64 60-131 7-73 (89)
102 PRK10378 inactive ferrous ion 49.6 81 0.0017 33.4 8.6 63 216-295 42-104 (375)
103 PF04151 PPC: Bacterial pre-pe 47.0 81 0.0018 24.3 6.4 65 218-295 5-69 (70)
104 PF07691 PA14: PA14 domain; I 46.0 91 0.002 27.5 7.5 64 219-287 53-123 (145)
105 MTH00038 COX2 cytochrome c oxi 45.5 95 0.0021 30.5 8.0 77 433-537 140-217 (229)
106 MTH00076 COX2 cytochrome c oxi 45.5 85 0.0018 30.9 7.6 77 433-537 140-217 (228)
107 smart00758 PA14 domain in bact 40.3 1.7E+02 0.0038 25.5 8.4 64 219-287 51-115 (136)
108 MTH00051 COX2 cytochrome c oxi 38.9 1.4E+02 0.003 29.5 8.0 78 433-538 144-222 (234)
109 PF11142 DUF2917: Protein of u 38.7 1.1E+02 0.0023 23.5 5.6 45 220-276 2-46 (63)
110 KOG1094 Discoidin domain recep 37.1 3.2E+02 0.0069 30.9 10.8 46 482-528 317-364 (807)
111 MTH00154 COX2 cytochrome c oxi 36.2 1.4E+02 0.0031 29.3 7.6 77 433-537 140-217 (227)
112 PRK10525 cytochrome o ubiquino 35.6 98 0.0021 32.0 6.5 76 434-537 152-229 (315)
113 PF14874 PapD-like: Flagellar- 35.2 2.5E+02 0.0055 23.1 8.1 56 221-283 15-72 (102)
114 PF04379 DUF525: Protein of un 33.8 98 0.0021 25.6 5.1 49 227-278 15-67 (90)
115 cd00918 Der-p2_like Several gr 33.6 1.3E+02 0.0029 26.3 6.2 62 61-122 19-88 (120)
116 MTH00168 COX2 cytochrome c oxi 33.0 1.6E+02 0.0035 28.8 7.4 77 433-537 140-217 (225)
117 PF11614 FixG_C: IG-like fold 32.4 1.9E+02 0.0041 24.9 7.0 48 227-283 34-83 (118)
118 KOG4063 Major epididymal secre 30.7 4.2E+02 0.0091 24.2 8.7 75 46-122 34-123 (158)
119 MTH00027 COX2 cytochrome c oxi 30.6 1.7E+02 0.0037 29.4 7.1 77 433-537 174-251 (262)
120 MTH00139 COX2 cytochrome c oxi 30.1 1.9E+02 0.0042 28.3 7.4 77 433-537 140-217 (226)
121 MTH00080 COX2 cytochrome c oxi 30.1 2.2E+02 0.0049 28.0 7.8 77 433-537 143-220 (231)
122 COG1188 Ribosome-associated he 29.8 39 0.00085 28.5 2.0 30 53-82 36-65 (100)
123 MTH00047 COX2 cytochrome c oxi 29.2 3E+02 0.0066 26.3 8.3 76 63-152 117-193 (194)
124 PF10717 ODV-E18: Occlusion-de 29.0 50 0.0011 26.7 2.4 25 569-593 18-42 (85)
125 PRK05461 apaG CO2+/MG2+ efflux 29.0 91 0.002 27.6 4.4 21 99-119 66-86 (127)
126 PRK05461 apaG CO2+/MG2+ efflux 26.7 1.7E+02 0.0037 25.9 5.7 48 227-277 32-83 (127)
127 PF11027 DUF2615: Protein of u 26.5 64 0.0014 27.4 2.8 21 575-595 53-73 (103)
128 cd01272 FE65_N Fe65 Phosphotyr 25.8 1.6E+02 0.0034 26.2 5.1 39 453-519 74-112 (138)
129 cd00916 Npc2_like Niemann-Pick 25.5 2.6E+02 0.0055 24.4 6.7 61 62-122 22-92 (123)
130 PF04744 Monooxygenase_B: Mono 24.4 47 0.001 34.7 1.9 54 97-150 70-128 (381)
131 COG1470 Predicted membrane pro 24.1 4.8E+02 0.01 28.5 9.2 73 218-298 389-469 (513)
132 KOG1554 COP9 signalosome, subu 24.1 66 0.0014 32.3 2.8 27 127-153 134-175 (347)
133 COG3354 FlaG Putative archaeal 23.7 4.4E+02 0.0095 23.9 7.5 53 226-282 70-130 (154)
134 PF10989 DUF2808: Protein of u 23.4 85 0.0018 28.4 3.3 28 106-133 96-126 (146)
135 PRK13202 ureB urease subunit b 22.3 1.7E+02 0.0036 24.9 4.4 59 63-121 12-84 (104)
136 PF14392 zf-CCHC_4: Zinc knuck 21.9 1.4E+02 0.0031 21.4 3.6 40 485-524 4-44 (49)
137 PF10989 DUF2808: Protein of u 21.1 1.1E+02 0.0023 27.8 3.4 27 494-520 98-128 (146)
138 PF05326 SVA: Seminal vesicle 20.7 2.3E+02 0.0051 24.9 5.2 73 49-135 30-103 (124)
No 1
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=4.5e-118 Score=970.36 Aligned_cols=542 Identities=74% Similarity=1.291 Sum_probs=458.1
Q ss_pred cccCCCeEEEEEEEEEEEecCCC--eeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCC
Q 007633 25 CFGGDPYVFYDWTISYVTASPLG--DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGV 102 (595)
Q Consensus 25 ~~a~~~~~~~~l~~~~~~~~~~G--~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv 102 (595)
+.|++++++|+|++++..++||| ..+++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|+.++|+||+
T Consensus 21 ~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv 100 (596)
T PLN00044 21 AGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGV 100 (596)
T ss_pred cccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCC
Confidence 56778899999999999999999 5568999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCC-CceeEeeeccccccHHHHH
Q 007633 103 LGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPD-GDITIFISDWYTKSHKKLR 181 (595)
Q Consensus 103 ~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d-~e~~l~l~d~~~~~~~~l~ 181 (595)
++|||||+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++..+.||..++ +|++|+|+||++.+...+.
T Consensus 101 ~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~ 180 (596)
T PLN00044 101 GGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALR 180 (596)
T ss_pred CCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHH
Confidence 889999999999999999988999999999999999999999999999877666775544 7999999999999877776
Q ss_pred HHHhCCCCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCccee
Q 007633 182 KDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTV 261 (595)
Q Consensus 182 ~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~ 261 (595)
..+..|...+.+|.++|||++.+.++|+........+.++|++||+|||||||++..+.+.|+|+||+|+|||+||.+++
T Consensus 181 ~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~ 260 (596)
T PLN00044 181 RALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTS 260 (596)
T ss_pred HHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccC
Confidence 66666665667899999999986665553333445578999999999999999999999999999999999999999999
Q ss_pred eeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCC-CCCcccccc
Q 007633 262 QQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPN-AYDTYFSMN 340 (595)
Q Consensus 262 p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~-~~~~~~~~~ 340 (595)
|..++++.|++||||||+|+++|+++++|||++..++..........+.|||+|.++....+.++|..+. .++..++.+
T Consensus 261 P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~ 340 (596)
T PLN00044 261 QQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSIN 340 (596)
T ss_pred ceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhh
Confidence 9999999999999999999999876548999997653222113456788999998765322223444332 334444555
Q ss_pred cccccccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCC
Q 007633 341 QARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFP 420 (595)
Q Consensus 341 ~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~ 420 (595)
+.+.++++.......+.|+++.++...++.+.+.+........+|+.+|+|||++|..|++|++++.+++..++|+.+++
T Consensus 341 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp 420 (596)
T PLN00044 341 QARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFP 420 (596)
T ss_pred hhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCC
Confidence 55666666665556677777666655555555443321111223678999999999999999998888888899988888
Q ss_pred CCCCCCCCccceeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcE
Q 007633 421 YKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAW 500 (595)
Q Consensus 421 ~~p~~~~~~~~~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~ 500 (595)
+.|.+......+.++.+++|++|||+|+|.....||||||||+|+||++|.|.|++.+++.||++||++|||+.|+++||
T Consensus 421 ~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW 500 (596)
T PLN00044 421 NHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAW 500 (596)
T ss_pred CCCCccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCe
Confidence 77765555667889999999999999999877789999999999999999999998877889999999999999999999
Q ss_pred EEEEEEecCcceeEEeeccccceeccceEEEEEecCCCC--CCCCCCCCccccccCccCCCccccccc
Q 007633 501 TAILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINPEID--KSAPLLPDNAIYCGLLSSLQKDQAQRI 566 (595)
Q Consensus 501 ~~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~~~~--~~~~~~p~~~~~c~~~~~~~~~~~~~~ 566 (595)
++|||++||||+|+||||++.|++.||++++.|.++.+. .++.++|++.+.||..+++++++.+++
T Consensus 501 ~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~~~~~~~~~~ 568 (596)
T PLN00044 501 TAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSSLQKEQSHRF 568 (596)
T ss_pred EEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccccccCCCCCCCcc
Confidence 999999999999999999999999999999999987753 678889999999999999888777653
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=8.1e-115 Score=940.22 Aligned_cols=525 Identities=50% Similarity=0.905 Sum_probs=448.6
Q ss_pred HHHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCc
Q 007633 12 VSFFFILLWLLNGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGV 91 (595)
Q Consensus 12 ~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~ 91 (595)
.++++.|++|++++.|++++++|+|++++..++|||+.+++++|||++|||+|++++||+|+|+|+|+|+++++|||||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi 88 (543)
T PLN02991 9 TAMILGLLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGI 88 (543)
T ss_pred HHHHHHHHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCc
Confidence 45788888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeec
Q 007633 92 QHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISD 171 (595)
Q Consensus 92 ~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d 171 (595)
+|.+++||||+++|||||+||++|+|+|++++|+||||||||.+.|+++|++|+|||++++..+.|+..+|+|++++|+|
T Consensus 89 ~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~D 168 (543)
T PLN02991 89 RNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGD 168 (543)
T ss_pred ccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecc
Confidence 99999999999999999999999999999977999999999999999999999999999876667776778999999999
Q ss_pred cccccHHHHHHHHhCCCCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCcee
Q 007633 172 WYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLL 251 (595)
Q Consensus 172 ~~~~~~~~l~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~ 251 (595)
|+++....+...+..+...+++|.+||||++. .+.++|++||+|||||||+|..+.+.|+|+||+|+
T Consensus 169 W~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~-------------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~t 235 (543)
T PLN02991 169 WYKTNHKDLRAQLDNGGKLPLPDGILINGRGS-------------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMK 235 (543)
T ss_pred eecCCHHHHHHHhhcCCCCCCCCEEEEccCCC-------------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEE
Confidence 99997766655555666667899999999985 26799999999999999999999999999999999
Q ss_pred EEeecCcceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCC
Q 007633 252 LVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPN 331 (595)
Q Consensus 252 via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~ 331 (595)
|||+||.+++|..++++.|++||||||+|+++++++ +|||++...+... .....|||+|.++..+.+.+.|..+.
T Consensus 236 VIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~~~~----~~~~~AIl~Y~g~~~~~~~~~p~~p~ 310 (543)
T PLN02991 236 LVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRFTSK----ILITTGVLHYSNSAGPVSGPIPDGPI 310 (543)
T ss_pred EEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCC-cEEEEEeeccCCC----CcceEEEEEeCCCCCCCCCCCCCCCc
Confidence 999999999999999999999999999999999888 9999998754432 25678999998765322223444332
Q ss_pred CCCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCC
Q 007633 332 AYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNI 411 (595)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~ 411 (595)
+..++.++....+.++.+....+.|..++.+...++++++.+..... ..+++.+|+|||++|..|++|++.+.+++.
T Consensus 311 --~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~ 387 (543)
T PLN02991 311 --QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAG-NIEGKQRYAVNSASFYPADTPLKLADYFKI 387 (543)
T ss_pred --cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeeccc-ccCceEEEEECCCccCCCCCChhhhhhhcc
Confidence 22334433333445555545555666555544455666665543221 234678999999999999999998888877
Q ss_pred CCccccC-CCCCCCCCCCccceeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcc
Q 007633 412 PGAYKLD-FPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVAR 490 (595)
Q Consensus 412 ~~~~~~~-~~~~p~~~~~~~~~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~r 490 (595)
+|+|+.+ +++.+.++......+++.++++++|||+|+|.+...||||||||+||||++|.|.|++.+.+.||+.||++|
T Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rR 467 (543)
T PLN02991 388 AGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSR 467 (543)
T ss_pred cCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcc
Confidence 8888764 555555555555678889999999999999998889999999999999999999999876678999999999
Q ss_pred cEEEeCCCcEEEEEEEecCcceeEEeeccccceeccceEEEEEecCCCC-CCCCCCCCccccccCccC
Q 007633 491 STTQVFPGAWTAILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINPEID-KSAPLLPDNAIYCGLLSS 557 (595)
Q Consensus 491 DTv~v~p~g~~~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~~~~-~~~~~~p~~~~~c~~~~~ 557 (595)
||+.|+++||++|||++||||+|+|||||..|+..||+++++|.+++.. .++.++|++.+.||..++
T Consensus 468 DTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~ 535 (543)
T PLN02991 468 CTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATG 535 (543)
T ss_pred cEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccccCCC
Confidence 9999999999999999999999999999999999999999999987776 678889999999986655
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=3.7e-113 Score=933.20 Aligned_cols=536 Identities=50% Similarity=0.896 Sum_probs=439.6
Q ss_pred HHHHHHHHHh---hccccCCCeEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeC
Q 007633 13 SFFFILLWLL---NGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWN 89 (595)
Q Consensus 13 ~~~~~~~~~~---~~~~a~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~H 89 (595)
+++.|+|+++ ..+.|++++++|+|++++.+.+|||+.+++++|||++|||+|++++||+|+|+|+|+|+++++||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWH 85 (552)
T PLN02354 6 LLAVLLCLAAAVALVVRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWS 85 (552)
T ss_pred HHHHHHHHHHHHHHhhhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccc
Confidence 4455555443 3345567889999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEee
Q 007633 90 GVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFI 169 (595)
Q Consensus 90 G~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l 169 (595)
|++|++++|+||+++|||||+||++|+|+|++.+|+||||||||.+.|+++||+|+|||++++..+.||+.+|+|+++++
T Consensus 86 Gi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l 165 (552)
T PLN02354 86 GIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLI 165 (552)
T ss_pred cccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEe
Confidence 99999999999999999999999999999999779999999999999999999999999998766677777789999999
Q ss_pred eccccccHHHHHHHHhCCCCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCc
Q 007633 170 SDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHN 249 (595)
Q Consensus 170 ~d~~~~~~~~l~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~ 249 (595)
+|||++....+...+..+...+.+|.+||||++.+.| ....+.++|++||+|||||||+|....+.|+|+||+
T Consensus 166 ~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~-------~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~ 238 (552)
T PLN02354 166 GDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGD-------GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHK 238 (552)
T ss_pred eeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCC-------CCCceEEEECCCCEEEEEEEecCCCceEEEEECCce
Confidence 9999998777766666666567789999999975432 123578999999999999999999999999999999
Q ss_pred eeEEeecCcceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCC
Q 007633 250 LLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDP 329 (595)
Q Consensus 250 ~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~ 329 (595)
|+|||+||.+++|..++++.|++||||||+|++++++| +|||++...+... .....|||+|.++..+.+.+.|..
T Consensus 239 ~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~~~~~~p~~ 313 (552)
T PLN02354 239 MKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPK-DYYMVASTRFLKK----VLTTTGIIRYEGGKGPASPELPEA 313 (552)
T ss_pred EEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCC-cEEEEEeccccCC----CccEEEEEEECCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999998888 9999998654322 267789999987654332223332
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhc
Q 007633 330 PNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQF 409 (595)
Q Consensus 330 p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~ 409 (595)
+. +..++.+++..++.++.+....|.+.....+...++++++.+..+.. ..++..+|+|||++|..|++|++.+.++
T Consensus 314 ~~--~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iNn~s~~~p~~P~L~~~~~ 390 (552)
T PLN02354 314 PV--GWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS-KVDGKLRYALNGVSHVDPETPLKLAEYF 390 (552)
T ss_pred Cc--ccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccc-cCCceEEEEECCccCCCCCCChHHhhhh
Confidence 21 22223334444444444444444454443333445666666654221 2346788999999999999999887765
Q ss_pred CC-CCccccC-CCCCCC--CCCCccceeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCC
Q 007633 410 NI-PGAYKLD-FPYKLM--SRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKW 485 (595)
Q Consensus 410 ~~-~~~~~~~-~~~~p~--~~~~~~~~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~ 485 (595)
+. .|.|+.+ +++.|. ......+.+++.+++|++|||+|+|.+...||||||||+||||++|.|.|++.....||+.
T Consensus 391 ~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~ 470 (552)
T PLN02354 391 GVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLL 470 (552)
T ss_pred cccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcC
Confidence 44 3666643 233222 1223456688899999999999999988899999999999999999999998766789999
Q ss_pred CCCcccEEEeCCCcEEEEEEEecCcceeEEeeccccceeccceEEEEEecCCCC-CCCCCCCCccccccCccCCCcccc
Q 007633 486 DGVARSTTQVFPGAWTAILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINPEID-KSAPLLPDNAIYCGLLSSLQKDQA 563 (595)
Q Consensus 486 ~p~~rDTv~v~p~g~~~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~~~~-~~~~~~p~~~~~c~~~~~~~~~~~ 563 (595)
||++|||+.|+++||++|||++||||+|+|||||+.|+++||++++.|.+++.. +++.++|++.+.|+..+++++++.
T Consensus 471 nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~~~~~~ 549 (552)
T PLN02354 471 DAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGLPKPPP 549 (552)
T ss_pred CCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999976655 566778999999998888766554
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=6.2e-113 Score=927.03 Aligned_cols=515 Identities=49% Similarity=0.856 Sum_probs=438.1
Q ss_pred ccCCCeEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCC
Q 007633 26 FGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGT 105 (595)
Q Consensus 26 ~a~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~t 105 (595)
...+++++|+|++++...++||+.+++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|++++|+||++++
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~t 90 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGT 90 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCC
Confidence 34455679999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccccHHHHHHHHh
Q 007633 106 NCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVE 185 (595)
Q Consensus 106 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~l~~~~~ 185 (595)
||||+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++..+.|++.+|+|++++++||++.+...+.+.++
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhh
Confidence 99999999999999998799999999999999999999999999876656677677899999999999988777666666
Q ss_pred CCCCCC-CCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceeeee
Q 007633 186 NGVDLG-VPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQN 264 (595)
Q Consensus 186 ~g~~~~-~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~ 264 (595)
.+...+ .+|.+||||++..++ +.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..
T Consensus 171 ~g~~~~~~~d~~liNG~~~~~~-----------~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~ 239 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVSYV-----------YSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSM 239 (536)
T ss_pred ccCcCCCCCCEEEEeccCCCCc-----------ceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcc
Confidence 655434 789999999987443 78999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccc
Q 007633 265 YTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARS 344 (595)
Q Consensus 265 ~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~~~~~~~~~~ 344 (595)
++++.|++||||||+|++++++| +|||++...+.+. ...+.|||+|.++..... ..|..|...+..++.+....
T Consensus 240 ~~~l~i~~GqRydVlV~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~ 313 (536)
T PLN02792 240 YTSLDIHVGQTYSVLVTMDQPPQ-NYSIVVSTRFIAA----KVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQS 313 (536)
T ss_pred eeEEEEccCceEEEEEEcCCCCc-eEEEEEEeccCCC----CCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhh
Confidence 99999999999999999998877 9999998765432 257789999987643211 12222222244455544445
Q ss_pred cccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCcccc-CCCCCC
Q 007633 345 IRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKL-DFPYKL 423 (595)
Q Consensus 345 ~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~-~~~~~p 423 (595)
++.++.+..+.+.|++++++....+++++.+..... ..+++.+|+|||++|..|++|++.+.++++.|+|+. ++++.|
T Consensus 314 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p 392 (536)
T PLN02792 314 IRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAA-LVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKP 392 (536)
T ss_pred hhhccCCCCCCCCCCcccccceeccceeEEeccccc-ccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCC
Confidence 555665555566777777666666667766554222 234578899999999999999999888777788865 355544
Q ss_pred CC-CCCccceeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEE
Q 007633 424 MS-RAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTA 502 (595)
Q Consensus 424 ~~-~~~~~~~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~ 502 (595)
.. +....+++++.+++|++|||+|+|.+...||||||||+||||++|.|.|++...+.||+.||++||||.|+++||++
T Consensus 393 ~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~a 472 (536)
T PLN02792 393 RRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTA 472 (536)
T ss_pred cccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEE
Confidence 42 22334678899999999999999988889999999999999999999999877778999999999999999999999
Q ss_pred EEEEecCcceeEEeeccccceeccceEEEEEecCCCC-CCCCCCCCccccccCccCC
Q 007633 503 ILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINPEID-KSAPLLPDNAIYCGLLSSL 558 (595)
Q Consensus 503 irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~~~~-~~~~~~p~~~~~c~~~~~~ 558 (595)
|||++||||+|+||||++.|+..||+++|.|.+++.. .++.++|++.+.||..+++
T Consensus 473 IRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~~ 529 (536)
T PLN02792 473 VYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASNK 529 (536)
T ss_pred EEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCccccccCC
Confidence 9999999999999999999999999999999987766 6788899999999977664
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=3e-112 Score=924.91 Aligned_cols=514 Identities=52% Similarity=0.914 Sum_probs=431.7
Q ss_pred hccccCCCeEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCC
Q 007633 23 NGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGV 102 (595)
Q Consensus 23 ~~~~a~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv 102 (595)
+...+.+++++|+|++++...++||+++++|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|++++||||+
T Consensus 21 ~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv 100 (539)
T PLN02835 21 SLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGV 100 (539)
T ss_pred hhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCC
Confidence 33455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccccHHHHHH
Q 007633 103 LGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRK 182 (595)
Q Consensus 103 ~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~l~~ 182 (595)
++|||||+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++..+.|+..+|+|++++++||+++....+..
T Consensus 101 ~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~ 180 (539)
T PLN02835 101 LGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQ 180 (539)
T ss_pred ccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHH
Confidence 99999999999999999987799999999999999999999999999766556677778999999999999998777666
Q ss_pred HHhCCCCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceee
Q 007633 183 DVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQ 262 (595)
Q Consensus 183 ~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p 262 (595)
.+..|...+.+|.+||||+.. +.++|++||+|||||||+|..+.+.|+|+||+|+||++||.+++|
T Consensus 181 ~~~~g~~~~~~d~~liNG~~~--------------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p 246 (539)
T PLN02835 181 RLDSGKVLPFPDGVLINGQTQ--------------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQ 246 (539)
T ss_pred HhhcCCCCCCCceEEEccccC--------------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCC
Confidence 666666677899999999987 789999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCcccccccc
Q 007633 263 QNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQA 342 (595)
Q Consensus 263 ~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~~~~~~~~ 342 (595)
..++++.|++||||||+|++++++| +|||++...+... .....|||+|.++..+.+.++|..+. .+..++...+
T Consensus 247 ~~~~~l~i~~GqRydvlv~~~~~~g-~y~i~a~~~~~~~----~~~~~ail~Y~~~~~~~~~~~p~~p~-~~~~~~~~~~ 320 (539)
T PLN02835 247 NIYDSLDVHVGQSVAVLVTLNQSPK-DYYIVASTRFTRQ----ILTATAVLHYSNSRTPASGPLPALPS-GELHWSMRQA 320 (539)
T ss_pred ceeeEEEECcCceEEEEEEcCCCCC-cEEEEEEccccCC----CcceEEEEEECCCCCCCCCCCCCCCc-cccccccchh
Confidence 9999999999999999999998887 9999986543322 25678999998765433334444331 1111233333
Q ss_pred cccccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccC-CCC
Q 007633 343 RSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLD-FPY 421 (595)
Q Consensus 343 ~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~-~~~ 421 (595)
....+.+.+....+.+..++.+....+++++.+..... ..+|..+|++||++|..|+.|++++.+++.++.|+.. +..
T Consensus 321 ~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~ 399 (539)
T PLN02835 321 RTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP-LINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQS 399 (539)
T ss_pred hccccccCccccCCCCCccccccccCCCceEEEecccc-ccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCcccc
Confidence 44444455555555555444444445566665543221 3456789999999999999999888777667788743 222
Q ss_pred CCCCCCCccceeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEE
Q 007633 422 KLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWT 501 (595)
Q Consensus 422 ~p~~~~~~~~~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~ 501 (595)
.+.+...+.+++++.+++|++|||+|+|.+...||||||||+||||++|.|.|++.....||+.||++|||+.|+++||+
T Consensus 400 ~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~ 479 (539)
T PLN02835 400 LPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWT 479 (539)
T ss_pred CCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEE
Confidence 33333356678899999999999999999888999999999999999999999876666789999999999999999999
Q ss_pred EEEEEecCcceeEEeeccccceeccceEEEEEecCCCC-CCCCCCCCccccccCccC
Q 007633 502 AILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINPEID-KSAPLLPDNAIYCGLLSS 557 (595)
Q Consensus 502 ~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~~~~-~~~~~~p~~~~~c~~~~~ 557 (595)
+|||++||||+|+|||||++|+..||+++++|.++.+. .++.++|++.+.||..++
T Consensus 480 ~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 480 TILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred EEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 99999999999999999999999999999999987665 668888999999996655
No 6
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-112 Score=913.39 Aligned_cols=529 Identities=45% Similarity=0.738 Sum_probs=475.4
Q ss_pred HhhccccCCCeEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCC
Q 007633 21 LLNGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQD 100 (595)
Q Consensus 21 ~~~~~~a~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~D 100 (595)
+..+..|+++++.|+|++++..+.++|++++++++||+||||+|+|++||+|+|+|.|+++++++|||||++|+.++|+|
T Consensus 18 ~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~D 97 (563)
T KOG1263|consen 18 LVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQD 97 (563)
T ss_pred HHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCcccc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccc-cHHH
Q 007633 101 GVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTK-SHKK 179 (595)
Q Consensus 101 Gv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~-~~~~ 179 (595)
|+.+|||||+||++|+|+|++++|.||||||+|++.|+++|++|+|||++++..+.|++.+|+|++|+++|||++ ++..
T Consensus 98 G~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~ 177 (563)
T KOG1263|consen 98 GVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKN 177 (563)
T ss_pred CCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHH
Confidence 944599999999999999999989999999999999999999999999999988889989999999999999996 8888
Q ss_pred HHHHHhCCCCCCC-CCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCc
Q 007633 180 LRKDVENGVDLGV-PDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGS 258 (595)
Q Consensus 180 l~~~~~~g~~~~~-~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~ 258 (595)
+...++.++..+. +|.++|||+..+..+| .++++|++||+|||||+|+|....+.|+|+||+|+|||+||.
T Consensus 178 l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~--------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~ 249 (563)
T KOG1263|consen 178 LKNFLDRTGALPNPSDGVLINGRSGFLYNC--------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGA 249 (563)
T ss_pred HHHhhccCCCCCCCCCceEECCCCCcccCc--------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecce
Confidence 8888777665554 8999999999655444 489999999999999999999999999999999999999999
Q ss_pred ceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCC---CCCCCCCc
Q 007633 259 YTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLP---DPPNAYDT 335 (595)
Q Consensus 259 ~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp---~~p~~~~~ 335 (595)
+++|..++++.|+|||||||+|+++|.++ +|+|+++.++.+...+...+..++++|.++..+.+...| ..+..++.
T Consensus 250 y~~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~ 328 (563)
T KOG1263|consen 250 YTKPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDT 328 (563)
T ss_pred EEeeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCc
Confidence 99999999999999999999999999999 999999998775432235889999999986555544322 23333466
Q ss_pred ccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCC-CCc
Q 007633 336 YFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNI-PGA 414 (595)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~-~~~ 414 (595)
.++.++.+.++++++...++|+|+++++++...+.+.+.+.++.. ..+++.+++||+++|+.|++|.+++.++.. ++.
T Consensus 329 ~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~ 407 (563)
T KOG1263|consen 329 AWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN-KNNGKLRASINNISFVTPKTPSLLAAYFKNIPGY 407 (563)
T ss_pred hhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC-CCCcEEEEEEcceEEECCCCchhhhhhhccCCcc
Confidence 788999999999999999999999999999999999999887653 567899999999999999999999988765 566
Q ss_pred cccCCCCCCCC--C--CCccceeEEecCCCcEEEEEEEcCCC---ccceeeecCceEEEEEEeCCccCC--CCCCCCCCC
Q 007633 415 YKLDFPYKLMS--R--APKVDTSLINGTYKGFMEIIFQNNDT---TVQSYHMDGYAFFVVGMDFGVWTE--NSRGTYNKW 485 (595)
Q Consensus 415 ~~~~~~~~p~~--~--~~~~~~~v~~~~~g~~ve~vi~N~~~---~~HP~HlHG~~F~Vl~~g~G~~~~--~~~~~~n~~ 485 (595)
++.++++.|.. + .++.+++++.+++++.|||+|+|.+. +.||||||||+|||||+|.|+|++ +.+..||++
T Consensus 408 ~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~ 487 (563)
T KOG1263|consen 408 FTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLV 487 (563)
T ss_pred ccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccC
Confidence 77678887732 2 23789999999999999999999875 458889999999999999999999 555789999
Q ss_pred CCCcccEEEeCCCcEEEEEEEecCcceeEEeeccccceeccceEEEEEecCCCC-CCCCCCCCccccccCccCCC
Q 007633 486 DGVARSTTQVFPGAWTAILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINPEID-KSAPLLPDNAIYCGLLSSLQ 559 (595)
Q Consensus 486 ~p~~rDTv~v~p~g~~~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~~~~-~~~~~~p~~~~~c~~~~~~~ 559 (595)
||+.||||.||||||++|||.|||||+|+||||+++|++.||+++|+|.+++.. +++.++|++.+.||..++.+
T Consensus 488 dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 488 DPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASGIP 562 (563)
T ss_pred CCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCCcC
Confidence 999999999999999999999999999999999999999999999999998877 88999999999999987653
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3e-111 Score=914.17 Aligned_cols=511 Identities=50% Similarity=0.907 Sum_probs=421.4
Q ss_pred CCCeEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCC
Q 007633 28 GDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNC 107 (595)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~ 107 (595)
.+++++|+|++++.+++|||+.+++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++||||+++|||
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQc 102 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNC 102 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccccHHHHHHHHhCC
Q 007633 108 PIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENG 187 (595)
Q Consensus 108 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~l~~~~~~g 187 (595)
||+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++..+.|+..+++|+.|+++||++.+...+...+..+
T Consensus 103 pI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g 182 (545)
T PLN02168 103 PILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNG 182 (545)
T ss_pred CCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcC
Confidence 99999999999999778999999999999999999999999998776667767799999999999998766555545555
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceeeeeeeE
Q 007633 188 VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267 (595)
Q Consensus 188 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~ 267 (595)
...+.+|.+||||++.. .+.++|++||+|||||||++..+.+.|+|+||+|+||++||.+++|..+++
T Consensus 183 ~~~~~~d~~liNG~~~~------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~ 250 (545)
T PLN02168 183 HSLPNPDGILFNGRGPE------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSS 250 (545)
T ss_pred CCCCCCCEEEEeccCCC------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeE
Confidence 44567899999999852 278999999999999999999999999999999999999999999999999
Q ss_pred EEEeccceEEEEEEeCCCC-C--cceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccc
Q 007633 268 MDIHVGQSFSFLVTTDQNA-S--SDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARS 344 (595)
Q Consensus 268 l~i~pGqR~dvlv~~~~~~-g--~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~~~~~~~~~~ 344 (595)
+.|++||||||+|++++++ | ++|||++...+... ...+.|||+|.++....+.|+|..+...+..++.++...
T Consensus 251 l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~----~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~ 326 (545)
T PLN02168 251 LDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA----YLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALS 326 (545)
T ss_pred EEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC----CcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhh
Confidence 9999999999999998655 3 38999998754432 267789999987643222344443322222223233333
Q ss_pred cccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccC-CCCCC
Q 007633 345 IRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLD-FPYKL 423 (595)
Q Consensus 345 ~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~-~~~~p 423 (595)
++.++.+....+.|.++++++..++++++.+..+. ...+|..+|+|||++|..|++|++.+.+++..+.+... +++.|
T Consensus 327 ~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p 405 (545)
T PLN02168 327 IRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV-MLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYP 405 (545)
T ss_pred hhhcCCCCCCCCCCcccccccccccceeEEecccc-cccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCC
Confidence 33445544455566655555555566666654321 12356789999999999999999887766554444332 34444
Q ss_pred CCCCCccceeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEE
Q 007633 424 MSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAI 503 (595)
Q Consensus 424 ~~~~~~~~~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~i 503 (595)
.+.....+++++.+++|++|||+|+|.....||||||||+||||++|.|.|++.....||+.||++|||+.|+++||++|
T Consensus 406 ~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vI 485 (545)
T PLN02168 406 SNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAI 485 (545)
T ss_pred CcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEE
Confidence 33223345788899999999999999988899999999999999999999998776789999999999999999999999
Q ss_pred EEEecCcceeEEeeccccceeccceEEEEEec-----CCCC--CCCCCCCCccccccCc
Q 007633 504 LVYLDNAGIWNLRAENLDTWYLGQEVYVNVIN-----PEID--KSAPLLPDNAIYCGLL 555 (595)
Q Consensus 504 rf~adNPG~W~~HCHil~H~~~GM~~~~~V~~-----~~~~--~~~~~~p~~~~~c~~~ 555 (595)
||++||||+|+|||||..|||.||+++++|.+ |+.. .++.++|++.+.||+.
T Consensus 486 RF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~~ 544 (545)
T PLN02168 486 LIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGKV 544 (545)
T ss_pred EEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhcccccC
Confidence 99999999999999999999999999999953 3333 4466789999999843
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.1e-100 Score=841.49 Aligned_cols=509 Identities=28% Similarity=0.488 Sum_probs=391.9
Q ss_pred CeEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCC-CCCc
Q 007633 30 PYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCP 108 (595)
Q Consensus 30 ~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~-tq~~ 108 (595)
.+|+|+|+|+++++++||+++++|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||+++ ||||
T Consensus 2 ~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p 81 (539)
T TIGR03389 2 EVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP 81 (539)
T ss_pred ceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccccHHHH-HHHHhCC
Q 007633 109 IPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKL-RKDVENG 187 (595)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~l-~~~~~~g 187 (595)
|+||++|+|+|++++|+||||||||...|+ +||+|+|||++++..+.|+...|+|++|+|+||+++....+ ......+
T Consensus 82 I~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 82 IQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred cCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 999999999999977999999999998766 59999999999876666666779999999999999866554 3334445
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceeeeeeeE
Q 007633 188 VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267 (595)
Q Consensus 188 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~ 267 (595)
....++|.++|||+.....+|+ ....+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~----~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~ 236 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCS----SKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKT 236 (539)
T ss_pred CCCCccceEEECCCcCCCCCCC----CCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCe
Confidence 5556789999999975322222 123478999999999999999999999999999999999999999999999999
Q ss_pred EEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCccccccccccccc
Q 007633 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRW 347 (595)
Q Consensus 268 l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~ 347 (595)
+.|++||||||+|++++.+| +||||+.....+..........|||+|.++.....+..+..+...+...+......+..
T Consensus 237 l~i~~GqRydVlv~a~~~~g-~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~ 315 (539)
T TIGR03389 237 IVIGPGQTTNVLLTADQSPG-RYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRS 315 (539)
T ss_pred EEecCCCEEEEEEECCCCCc-eEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhccc
Confidence 99999999999999998888 99999976533221123356889999987543111111111110010000000000000
Q ss_pred ccccCCCCCCCCCCCCcCccceeEEEEEeccccc---------cc-CCeEEEEecCeecCCCCCcHhhhhhcCCCCcccc
Q 007633 348 NVSAGAARPNPQGSFKYGQITVTDVYVILNRPAE---------LI-EGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKL 417 (595)
Q Consensus 348 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~---------~~-~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~ 417 (595)
...+..+...| ..+++++.+...... .. ....+|.|||++|..|..|++.+.+.+..+.+..
T Consensus 316 ~~~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~ 387 (539)
T TIGR03389 316 LNSAQYPANVP--------VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTT 387 (539)
T ss_pred ccccCCCCCCC--------CCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCcccc
Confidence 00000011111 122333332221100 11 2247899999999988999886665544554443
Q ss_pred CCCCCCC-----CC-------CCccceeEEecCCCcEEEEEEEcCC---CccceeeecCceEEEEEEeCCccCCCC-CCC
Q 007633 418 DFPYKLM-----SR-------APKVDTSLINGTYKGFMEIIFQNND---TTVQSYHMDGYAFFVVGMDFGVWTENS-RGT 481 (595)
Q Consensus 418 ~~~~~p~-----~~-------~~~~~~~v~~~~~g~~ve~vi~N~~---~~~HP~HlHG~~F~Vl~~g~G~~~~~~-~~~ 481 (595)
++++.+. ++ ....+.+++.+++|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...
T Consensus 388 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~ 467 (539)
T TIGR03389 388 DFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAK 467 (539)
T ss_pred CCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccc
Confidence 3222211 00 1223667899999999999999975 347999999999999999999998643 236
Q ss_pred CCCCCCCcccEEEeCCCcEEEEEEEecCcceeEEeeccccceeccceEEEEEecCCCC-CCCCCCCCccccc
Q 007633 482 YNKWDGVARSTTQVFPGAWTAILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINPEID-KSAPLLPDNAIYC 552 (595)
Q Consensus 482 ~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~~~~-~~~~~~p~~~~~c 552 (595)
+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..||++.|.+...+.. .++.++|++++.|
T Consensus 468 ~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 468 FNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 8999999999999999999999999999999999999999999999999988765443 5688899999998
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.5e-100 Score=840.19 Aligned_cols=526 Identities=28% Similarity=0.501 Sum_probs=396.1
Q ss_pred hHHHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCC-CCceeeeC
Q 007633 11 CVSFFFILLWLLNGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWN 89 (595)
Q Consensus 11 ~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~-~~~~iH~H 89 (595)
++|.+.-...++...+ .+++++|+|++++..++|||+++++++|||++|||+|++++||+|+|+|+|+|+ ++++||||
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwH 82 (574)
T PLN02191 4 IVWWIVTVVAVLTHTA-SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWH 82 (574)
T ss_pred eehhHHHHHHHHHHhh-ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECC
Confidence 3444444333332222 346899999999999999999999999999999999999999999999999998 78999999
Q ss_pred CccCCCCCCCCCCCC-CCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEe
Q 007633 90 GVQHRKNSWQDGVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIF 168 (595)
Q Consensus 90 G~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~ 168 (595)
|++|++++|+||+++ |||||+||++|+|+|++ +|+||||||||.+.|+++||+|+|||+++.....++ .+|+|++|+
T Consensus 83 Gl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~ 160 (574)
T PLN02191 83 GIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLL 160 (574)
T ss_pred CCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEe
Confidence 999999999999998 99999999999999999 589999999999999999999999999765433333 459999999
Q ss_pred eeccccccHHHHHHHHhC--CCCCCCCCeEEEcCCCCCCCCCCCC--------------CCCCCceeEEEecCcEEEEEE
Q 007633 169 ISDWYTKSHKKLRKDVEN--GVDLGVPDGILINGLGPYRYDAAIV--------------PDGIPYQLINVEPGKTYRLRV 232 (595)
Q Consensus 169 l~d~~~~~~~~l~~~~~~--g~~~~~~d~~liNG~~~~~~~~~~~--------------~~~~~~~~l~v~~G~~~rlRl 232 (595)
++||++.........+.. .....++|.+||||++.+.|..+.. ...+....++|++||+|||||
T Consensus 161 l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRi 240 (574)
T PLN02191 161 LSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRL 240 (574)
T ss_pred eeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEE
Confidence 999999854332222211 1223568999999999988853210 112334479999999999999
Q ss_pred EEeCCCceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEE
Q 007633 233 HNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAI 312 (595)
Q Consensus 233 iNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ai 312 (595)
||+|..+.+.|+|+||+|+|||+||.+++|+.++++.|++||||||+|+++++++++||||+....... ......||
T Consensus 241 INa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~~ai 317 (574)
T PLN02191 241 ASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQALTI 317 (574)
T ss_pred EecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCceEE
Confidence 999999999999999999999999999999999999999999999999999877558999997653221 12345699
Q ss_pred EEecCCCCCC--CCCCCCCCCCCCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEE
Q 007633 313 LHYSNSLGPA--SGPLPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTT 390 (595)
Q Consensus 313 l~y~~~~~~~--~~~lp~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 390 (595)
|+|.+..... +.+.|..+.+.+.... .....++......+.+. ....++++.+.... ..++..+|.
T Consensus 318 l~Y~~~~~~~~p~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~~--~~~~~~~~~ 385 (574)
T PLN02191 318 LNYVTAPASKLPSSPPPVTPRWDDFERS----KNFSKKIFSAMGSPSPP------KKYRKRLILLNTQN--LIDGYTKWA 385 (574)
T ss_pred EEECCCCCCCCCCCCCCCCCcccccchh----hcccccccccccCCCCC------CcccceEEEecccc--eeCCeEEEE
Confidence 9997654321 1111111111111100 11111111100011111 01123444443211 234567899
Q ss_pred ecCeecCCCCCcHhhhhhcCCCCccccCCCCCC--CC---------CCCccceeEEecCCCcEEEEEEEcCC------Cc
Q 007633 391 LNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKL--MS---------RAPKVDTSLINGTYKGFMEIIFQNND------TT 453 (595)
Q Consensus 391 iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p--~~---------~~~~~~~~v~~~~~g~~ve~vi~N~~------~~ 453 (595)
+||++|..|.+|++.+.+.+.++.|..+.+... .+ ...+.+.+++.+++|++|||+|+|.+ ..
T Consensus 386 ~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~ 465 (574)
T PLN02191 386 INNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSE 465 (574)
T ss_pred ECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCC
Confidence 999999989999888766555555543222111 00 01234667889999999999999985 56
Q ss_pred cceeeecCceEEEEEEeCCccCCCC-CCCCCCCCCCcccEEEeCCCcEEEEEEEecCcceeEEeeccccceeccceEEEE
Q 007633 454 VQSYHMDGYAFFVVGMDFGVWTENS-RGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIWNLRAENLDTWYLGQEVYVN 532 (595)
Q Consensus 454 ~HP~HlHG~~F~Vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W~~HCHil~H~~~GM~~~~~ 532 (595)
.||||||||+||||++|.|.|++.. ...||+.||++|||+.|+++||++|||++||||+|+|||||++|+..||++.|.
T Consensus 466 ~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~ 545 (574)
T PLN02191 466 IHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA 545 (574)
T ss_pred CCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe
Confidence 7999999999999999999998632 246899999999999999999999999999999999999999999999999884
Q ss_pred EecCCCCCCCCCCCCccccccCccCC
Q 007633 533 VINPEIDKSAPLLPDNAIYCGLLSSL 558 (595)
Q Consensus 533 V~~~~~~~~~~~~p~~~~~c~~~~~~ 558 (595)
..++. ..++|++.+.|+.++..
T Consensus 546 -e~~~~---~~~~p~~~~~C~~~~~~ 567 (574)
T PLN02191 546 -EGLNR---IGKIPDEALGCGLTKQF 567 (574)
T ss_pred -cChhh---ccCCCcchhhhhccccc
Confidence 33332 34478889999977554
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=2.8e-99 Score=832.10 Aligned_cols=524 Identities=30% Similarity=0.503 Sum_probs=403.9
Q ss_pred HHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECC-CCCceeeeCCc
Q 007633 13 SFFFILLWLLNGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDL-DEPLLLTWNGV 91 (595)
Q Consensus 13 ~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l-~~~~~iH~HG~ 91 (595)
++++.++.+++.+.+++.+++|+|+++++.++|||+.+++|+|||++|||+|++++||+|+|+|+|++ +++++|||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~ 85 (566)
T PLN02604 6 ALFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGI 85 (566)
T ss_pred hHHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCC
Confidence 44555555567777788899999999999999999999999999999999999999999999999998 58999999999
Q ss_pred cCCCCCCCCCCCC-CCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeee
Q 007633 92 QHRKNSWQDGVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFIS 170 (595)
Q Consensus 92 ~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~ 170 (595)
++.+++|+||+++ +||+|+||++++|+|++ +++||||||||.+.|+.+||+|+|||++++..+.|+ .+|+|.+++|+
T Consensus 86 ~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~ 163 (566)
T PLN02604 86 RQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILT 163 (566)
T ss_pred CCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEee
Confidence 9999999999998 99999999999999999 699999999999999999999999999987655565 45889999999
Q ss_pred ccccccHHHHHHHHhCC--CCCCCCCeEEEcCCCCCCCCCCC-----------CCCCCCceeEEEecCcEEEEEEEEeCC
Q 007633 171 DWYTKSHKKLRKDVENG--VDLGVPDGILINGLGPYRYDAAI-----------VPDGIPYQLINVEPGKTYRLRVHNVGI 237 (595)
Q Consensus 171 d~~~~~~~~l~~~~~~g--~~~~~~d~~liNG~~~~~~~~~~-----------~~~~~~~~~l~v~~G~~~rlRliNag~ 237 (595)
||+++...++....... ....++|..+|||++.++|.... ....+..+.++|++|++|||||||+|.
T Consensus 164 Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~ 243 (566)
T PLN02604 164 DWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTA 243 (566)
T ss_pred ccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccc
Confidence 99998765443322211 12246899999999998885321 011234568999999999999999999
Q ss_pred CceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecC
Q 007633 238 STSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSN 317 (595)
Q Consensus 238 ~~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~ 317 (595)
.+.+.|+|+||+|+|||+||.+++|.+++.+.|++||||||+|+++++++++||||+....... ....+.|||+|.+
T Consensus 244 ~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y~~ 320 (566)
T PLN02604 244 LSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPGLAIFNYYP 320 (566)
T ss_pred cceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcceeEEEEECC
Confidence 9999999999999999999999999999999999999999999999877658999986543221 2266789999986
Q ss_pred CCCCCCCC-C-CCCCCCCCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCee
Q 007633 318 SLGPASGP-L-PDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGIS 395 (595)
Q Consensus 318 ~~~~~~~~-l-p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s 395 (595)
.......+ . +..+.+.+.....++...++.... . .. . .....++++.+..+.. ..++..+|+||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~-------~~~~~d~~~~~~~~~~-~~~~~~~w~in~~~ 389 (566)
T PLN02604 321 NHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHG-Y-IH-P-------PPLTSDRVIVLLNTQN-EVNGYRRWSVNNVS 389 (566)
T ss_pred CCCCCCCCCCCCCCCcccccchhhcchhccccccc-C-cC-C-------CCCCCCeEEEEecccc-ccCCeEEEEECccc
Confidence 43211111 0 111111011111111111111000 0 00 0 1123455555533221 23456799999999
Q ss_pred cCCCCCcHhhhhhcCCCCccccCCC-CC-----------CCCCCCccceeEEecCCCcEEEEEEEcCC------Ccccee
Q 007633 396 YLPPSTPLMLAQQFNIPGAYKLDFP-YK-----------LMSRAPKVDTSLINGTYKGFMEIIFQNND------TTVQSY 457 (595)
Q Consensus 396 f~~~~~P~~~~~~~~~~~~~~~~~~-~~-----------p~~~~~~~~~~v~~~~~g~~ve~vi~N~~------~~~HP~ 457 (595)
|..++.|++.+.+...++.|+.+.+ +. ..+.....+.+++.++.|++||++|+|.. ...|||
T Consensus 390 ~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~ 469 (566)
T PLN02604 390 FNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPW 469 (566)
T ss_pred CCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCE
Confidence 9988899887765545566653211 10 01112334567889999999999999975 356999
Q ss_pred eecCceEEEEEEeCCccCCCC-CCCCCCCCCCcccEEEeCCCcEEEEEEEecCcceeEEeeccccceeccceEEEEEecC
Q 007633 458 HMDGYAFFVVGMDFGVWTENS-RGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINP 536 (595)
Q Consensus 458 HlHG~~F~Vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~ 536 (595)
|||||+||||++|.|.|++.. ...||+.||++|||+.|+++||++|||++||||.|+|||||++|+..||++.|... +
T Consensus 470 HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~ 548 (566)
T PLN02604 470 HLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-I 548 (566)
T ss_pred EecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-h
Confidence 999999999999999998653 34699999999999999999999999999999999999999999999999988643 3
Q ss_pred CCCCCCCCCCCccccccCcc
Q 007633 537 EIDKSAPLLPDNAIYCGLLS 556 (595)
Q Consensus 537 ~~~~~~~~~p~~~~~c~~~~ 556 (595)
+ ...++|.+.+.|+..+
T Consensus 549 ~---~~~~~p~~~~~C~~~~ 565 (566)
T PLN02604 549 E---RVGKLPSSIMGCGESK 565 (566)
T ss_pred h---hccCCCCCcCccccCC
Confidence 2 3557788999998553
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=9.2e-98 Score=817.90 Aligned_cols=502 Identities=30% Similarity=0.540 Sum_probs=387.1
Q ss_pred eEEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCC-CCceeeeCCccCCCCCCCCCCCC-CCCc
Q 007633 31 YVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-TNCP 108 (595)
Q Consensus 31 ~~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DGv~~-tq~~ 108 (595)
+|+|+|+++++.++|||+.+.+|+|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|.+++||||+++ +||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 478999999999999999999999999999999999999999999999995 89999999999999999999998 9999
Q ss_pred cCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccccHHHHHHHHhC--
Q 007633 109 IPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVEN-- 186 (595)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~l~~~~~~-- 186 (595)
|+||++|+|+|++ +|+||||||||.+.|+++||+|+|||+++...+.|+ .+|+|++|+|+||+++...+.......
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 689999999999999999999999999986544555 458999999999999866443222221
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCCCC-------------CCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEE
Q 007633 187 GVDLGVPDGILINGLGPYRYDAAIV-------------PDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV 253 (595)
Q Consensus 187 g~~~~~~d~~liNG~~~~~~~~~~~-------------~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~vi 253 (595)
.....++|.++|||++.++|..... ...+....++|++|++|||||||++..+.+.|+|+||+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 1122568999999999888753311 112334569999999999999999999999999999999999
Q ss_pred eecCcceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCC--CCCCCCCC
Q 007633 254 ETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPAS--GPLPDPPN 331 (595)
Q Consensus 254 a~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~--~~lp~~p~ 331 (595)
|+||.+++|..++++.|++||||||+|++++.++++||||+...... .......|||+|.++..... .+.|..+.
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~ 315 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLPPTPPPVTPA 315 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999987655899999764331 12356789999987543211 11111221
Q ss_pred CCCcccccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCC
Q 007633 332 AYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNI 411 (595)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~ 411 (595)
+.+..... .....+......+.|. ...++++.+..... ..++..+|++||++|..|..|++.+.+++.
T Consensus 316 ~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~ 383 (541)
T TIGR03388 316 WDDFDRSK----AFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQN-KINGYTKWAINNVSLTLPHTPYLGSLKYNL 383 (541)
T ss_pred ccccchhh----ccchhhhccccCCCCC-------CCCCcEEEEeccCc-ccCceEEEEECcccCCCCCccHHHHHhhcC
Confidence 11111000 0000000000011111 12345544433211 234567899999999888899887766544
Q ss_pred CCccccCCC-----------CCCCCCCCccceeEEecCCCcEEEEEEEcCC------CccceeeecCceEEEEEEeCCcc
Q 007633 412 PGAYKLDFP-----------YKLMSRAPKVDTSLINGTYKGFMEIIFQNND------TTVQSYHMDGYAFFVVGMDFGVW 474 (595)
Q Consensus 412 ~~~~~~~~~-----------~~p~~~~~~~~~~v~~~~~g~~ve~vi~N~~------~~~HP~HlHG~~F~Vl~~g~G~~ 474 (595)
.+.|....+ ..+.+...+.++.++.++.|++||++|+|.. ...||||||||+||||++|.|.|
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~ 463 (541)
T TIGR03388 384 LNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKF 463 (541)
T ss_pred CccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCC
Confidence 444432111 0111123345678899999999999999974 45799999999999999999999
Q ss_pred CCC-CCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcceeEEeeccccceeccceEEEEEecCCCCCCCCCCCCcccccc
Q 007633 475 TEN-SRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINPEIDKSAPLLPDNAIYCG 553 (595)
Q Consensus 475 ~~~-~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~~~~~~~~~~p~~~~~c~ 553 (595)
++. ....+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..||++.|... ++ ...++|++.+.||
T Consensus 464 ~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~---~~~~~P~~~~~C~ 539 (541)
T TIGR03388 464 RPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VE---KVGKLPKEALGCG 539 (541)
T ss_pred CcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-cc---ccCCCCccccCCC
Confidence 754 234699999999999999999999999999999999999999999999999988643 33 3445789999997
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.3e-95 Score=798.55 Aligned_cols=490 Identities=21% Similarity=0.379 Sum_probs=372.6
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCC-CCceeeeCCccCCCCCCCCCCCC-CCCcc
Q 007633 32 VFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-TNCPI 109 (595)
Q Consensus 32 ~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DGv~~-tq~~I 109 (595)
-.|+|+++++.+++||+.+++++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|+.++|+||+++ |||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46999999999999999999999999999999999999999999999997 89999999999999999999999 99999
Q ss_pred CCCCeEEEEEEEC-CceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccccHHHHHHHHhCC-
Q 007633 110 PAGWNWTYQFQVK-DQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENG- 187 (595)
Q Consensus 110 ~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~l~~~~~~g- 187 (595)
+||++|+|+|+++ +|+||||||||.+.|+. ||+|+|||++++.. ++ .+|+|++|+|+||+++...++...+..+
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 164 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTP 164 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccC
Confidence 9999999999985 58999999999999987 59999999987543 33 3489999999999999776654433222
Q ss_pred -CCCCCCCeEEEcCCCCCCCCCCCC--CCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCc-eeEEeecCcceeee
Q 007633 188 -VDLGVPDGILINGLGPYRYDAAIV--PDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHN-LLLVETEGSYTVQQ 263 (595)
Q Consensus 188 -~~~~~~d~~liNG~~~~~~~~~~~--~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~-~~via~DG~~~~p~ 263 (595)
....++|.++|||++.+.|..... ...|..+.++|++||+|||||||+|..+.+.|+|+||+ |+|||+||.+++|.
T Consensus 165 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 165 FTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred CccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 123567999999998665422211 12345689999999999999999999999999999999 99999999999999
Q ss_pred eeeEEEEeccceEEEEEEeCCC-------CCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCcc
Q 007633 264 NYTNMDIHVGQSFSFLVTTDQN-------ASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTY 336 (595)
Q Consensus 264 ~~d~l~i~pGqR~dvlv~~~~~-------~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~~ 336 (595)
.++++.|++||||||+|+++++ ++ +||||+.....++ ...+.|||+|.++.....+..|..+.. ...
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~-~Y~ir~~~~~~~~----~~~~~aiL~Y~~~~~~~~~~~p~~~~~-~~~ 318 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKR-QYFIQFETRDRPK----VYRGYAVLRYRSDKASKLPSVPETPPL-PLP 318 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCC-cEEEEEeecCCCC----cceEEEEEEeCCCCCCCCCCCCCCCCC-Ccc
Confidence 9999999999999999999975 35 9999997654322 256789999976532211111211100 000
Q ss_pred cccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecccccc-cCCeEEEEecCeecCC--CCCcHhhhhhcCCCC
Q 007633 337 FSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAEL-IEGKWRTTLNGISYLP--PSTPLMLAQQFNIPG 413 (595)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~iNg~sf~~--~~~P~~~~~~~~~~~ 413 (595)
.....+.+ .++.+......+. +. ....+++++.+....... .++..+|++||++|.. +++|++...+.+.
T Consensus 319 ~~~~~~~~--~~l~pl~~~~~~~--~~-~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~-- 391 (538)
T TIGR03390 319 NSTYDWLE--YELEPLSEENNQD--FP-TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENG-- 391 (538)
T ss_pred Ccchhhhh--eeeEecCccccCC--CC-CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCC--
Confidence 00000000 0111111000000 00 012456777766543211 2467899999999985 7889886654221
Q ss_pred cccc-CCCCCCCCCCCccceeEEecCCCcEEEEEEEcCC--------CccceeeecCceEEEEEEeCCccCCCC-CCCCC
Q 007633 414 AYKL-DFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNND--------TTVQSYHMDGYAFFVVGMDFGVWTENS-RGTYN 483 (595)
Q Consensus 414 ~~~~-~~~~~p~~~~~~~~~~v~~~~~g~~ve~vi~N~~--------~~~HP~HlHG~~F~Vl~~g~G~~~~~~-~~~~n 483 (595)
.... .+...+.......+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.. ...+|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~n 471 (538)
T TIGR03390 392 LPATPNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLE 471 (538)
T ss_pred CCcCCCcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhc
Confidence 0000 0000000001223566788999999999999974 467999999999999999999998643 23588
Q ss_pred CCCCCcccEEEeC----------CCcEEEEEEEecCcceeEEeeccccceeccceEEEEEecCCC
Q 007633 484 KWDGVARSTTQVF----------PGAWTAILVYLDNAGIWNLRAENLDTWYLGQEVYVNVINPEI 538 (595)
Q Consensus 484 ~~~p~~rDTv~v~----------p~g~~~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~~~~~ 538 (595)
+.||++|||+.|+ +++|++|||++||||+|+|||||.+|+.+||+++|.|.+.++
T Consensus 472 l~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 472 NYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAED 536 (538)
T ss_pred cCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChHH
Confidence 9999999999996 899999999999999999999999999999999999877653
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.4e-77 Score=655.25 Aligned_cols=429 Identities=22% Similarity=0.303 Sum_probs=321.4
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCC-CCCccC
Q 007633 32 VFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCPIP 110 (595)
Q Consensus 32 ~~~~l~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~-tq~~I~ 110 (595)
+.|+|++++.+++++|+.+++|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++. +++||+|+ +||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 789999999999999999999999999999999999999999999999999999999999874 67999998 999999
Q ss_pred CCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccccHHHHHHHHh-----
Q 007633 111 AGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVE----- 185 (595)
Q Consensus 111 PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~l~~~~~----- 185 (595)
||++|+|+|++ .++||||||||.+.|+++||+|+|||++++..+. .+|+|++|+|+||++.+...+...+.
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999999 5899999999999999999999999998755333 34899999999999875444321111
Q ss_pred -----------------CCCC------------------C----CCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCc
Q 007633 186 -----------------NGVD------------------L----GVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGK 226 (595)
Q Consensus 186 -----------------~g~~------------------~----~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~ 226 (595)
.|.. . +....+||||+.. ...+++.+++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-----------~~~~~~~v~~G~ 268 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-----------AGNWTGLFRPGE 268 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-----------CCCceEEECCCC
Confidence 0100 0 0112478999875 223679999999
Q ss_pred EEEEEEEEeCCCceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCC
Q 007633 227 TYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNK 306 (595)
Q Consensus 227 ~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~ 306 (595)
+|||||||+|+.+.+.|+|+||+|+||++||.+++|..++++.|++||||||+|+.+ ..| .|+|++......
T Consensus 269 rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g-~~~i~a~~~~~~------ 340 (587)
T TIGR01480 269 KVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDD-AFTIFAQDSDRT------ 340 (587)
T ss_pred EEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCc-eEEEEEEecCCC------
Confidence 999999999999999999999999999999999999999999999999999999987 346 899999765321
Q ss_pred cceEEEEEecCCCCCCCCCCCCCCCCCCcccccc-----ccc---------ccc---------------cccccCC----
Q 007633 307 VTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMN-----QAR---------SIR---------------WNVSAGA---- 353 (595)
Q Consensus 307 ~~~~ail~y~~~~~~~~~~lp~~p~~~~~~~~~~-----~~~---------~~~---------------~~l~~~~---- 353 (595)
....++|++........++++..+...-.+.... ... ... .+.....
T Consensus 341 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (587)
T TIGR01480 341 GYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPA 420 (587)
T ss_pred ceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcc
Confidence 4567788876542111111211110000000000 000 000 0000000
Q ss_pred ----------CCCCCCCC---C----------------------CcCccceeEEEEEecccccccCCeEEEEecCeecCC
Q 007633 354 ----------ARPNPQGS---F----------------------KYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLP 398 (595)
Q Consensus 354 ----------~~p~p~~~---~----------------------~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~ 398 (595)
..+.|... . .+.....+|++.+..+ ....+..|+|||..|.+
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~---g~m~~~~wtiNG~~~~~ 497 (587)
T TIGR01480 421 SEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLT---GNMERFAWSFDGEAFGL 497 (587)
T ss_pred cccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEc---CCCceeEEEECCccCCC
Confidence 00000000 0 0001234555555432 12235679999987631
Q ss_pred CCCcHhhhhhcCCCCccccCCCCCCCCCCCccceeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCC
Q 007633 399 PSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENS 478 (595)
Q Consensus 399 ~~~P~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~ 478 (595)
. ..+.++.|+.|+|.|.|...+.||||+||+.|+++..+ |.+
T Consensus 498 -~--------------------------------~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~-G~~---- 539 (587)
T TIGR01480 498 -K--------------------------------TPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQ-GEF---- 539 (587)
T ss_pred -C--------------------------------CceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCC-Ccc----
Confidence 1 12358899999999999999999999999999988653 321
Q ss_pred CCCCCCCCCCcccEEEeCCCcEEEEEEEecCcceeEEeeccccceeccceEEEEEe
Q 007633 479 RGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIWNLRAENLDTWYLGQEVYVNVI 534 (595)
Q Consensus 479 ~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W~~HCHil~H~~~GM~~~~~V~ 534 (595)
+.++||+.|+|++.+.++|.+||||.|+||||++.|++.|||..++|.
T Consensus 540 --------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 540 --------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred --------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 356899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.3e-74 Score=627.66 Aligned_cols=442 Identities=18% Similarity=0.194 Sum_probs=302.6
Q ss_pred eEEEEEEEEEEEecCCCee-EEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCcc
Q 007633 31 YVFYDWTISYVTASPLGDK-QQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPI 109 (595)
Q Consensus 31 ~~~~~l~~~~~~~~~~G~~-~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I 109 (595)
...|+|++++...+++|.. .++|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++. +.+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~--~~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVP--GEVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCC--CccCCCC--CCCC
Confidence 3469999999999998544 579999999999999999999999999999999999999999986 4599987 8999
Q ss_pred CCCCeEEEEEEECCceeeeEEccCc----chhhhcCceeeEEEeccCCCCCCCC--CCCCceeEeeeccccccHHHHHHH
Q 007633 110 PAGWNWTYQFQVKDQIGSFFYFPSL----DFQRAAGGYGGIIINNRDVIPLPFA--VPDGDITIFISDWYTKSHKKLRKD 183 (595)
Q Consensus 110 ~PG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~d~e~~l~l~d~~~~~~~~l~~~ 183 (595)
+||++|+|+|++++++||||||||. +.|+++||+|+|||+++++.+.+++ ...+|++++|+||+++.+..+...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999996568999999995 7999999999999999865433332 245699999999999765544322
Q ss_pred HhCC--CCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEE-eCCceeEEeecCcce
Q 007633 184 VENG--VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRI-QNHNLLLVETEGSYT 260 (595)
Q Consensus 184 ~~~g--~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i-~gh~~~via~DG~~~ 260 (595)
.+.. .....+|.++|||+.. |.+.++ +++|||||||+|..+.+.|++ +||+|+|||+||+++
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~--------------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l 265 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY--------------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLL 265 (523)
T ss_pred ccccccccCccCCeEEECCccc--------------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcc
Confidence 2211 1224678999999987 777775 579999999999999999998 899999999999987
Q ss_pred -eeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCC-CCCCCcceEEEEEecCCCCCCCCCCCCCCCCC-Cccc
Q 007633 261 -VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNS-SEWNKVTGVAILHYSNSLGPASGPLPDPPNAY-DTYF 337 (595)
Q Consensus 261 -~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~-~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~-~~~~ 337 (595)
+|..++++.|+|||||||+|++++ .+ .|++.+....... ..........++++.........++|...... ....
T Consensus 266 ~~P~~v~~l~lapGeR~dvlv~~~~-~~-~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~ 343 (523)
T PRK10965 266 AEPVKVSELPILMGERFEVLVDTSD-GK-AFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPS 343 (523)
T ss_pred cCccEeCeEEECccceEEEEEEcCC-Cc-eEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCc
Confidence 799999999999999999999984 45 8999875432110 00000113455555433211111222211000 0000
Q ss_pred -ccccccccccccccCCCC-----C-CCCCCCCcCccce---eEEE------EEecc---cccccCCeEEEEecCeecCC
Q 007633 338 -SMNQARSIRWNVSAGAAR-----P-NPQGSFKYGQITV---TDVY------VILNR---PAELIEGKWRTTLNGISYLP 398 (595)
Q Consensus 338 -~~~~~~~~~~~l~~~~~~-----p-~p~~~~~~~~~~~---~~~~------~l~~~---~~~~~~g~~~~~iNg~sf~~ 398 (595)
.....+.+...+...... . ...+.-..+.... ...+ .+... .....+....|+|||++|..
T Consensus 344 ~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~ 423 (523)
T PRK10965 344 LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM 423 (523)
T ss_pred ccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC
Confidence 000001110000000000 0 0000000000000 0000 00000 00000000125777777642
Q ss_pred CCCcHhhhhhcCCCCccccCCCCCCCCCCCccceeEEecCCCcEEEEEEEcCCC-ccceeeecCceEEEEEEeCCccCCC
Q 007633 399 PSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDT-TVQSYHMDGYAFFVVGMDFGVWTEN 477 (595)
Q Consensus 399 ~~~P~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vi~N~~~-~~HP~HlHG~~F~Vl~~g~G~~~~~ 477 (595)
. . ..+.++.|++++|.|.|.+. ..|||||||++||||+++...-
T Consensus 424 ~-~-------------------------------~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~--- 468 (523)
T PRK10965 424 N-K-------------------------------PMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPP--- 468 (523)
T ss_pred C-C-------------------------------cceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCC---
Confidence 1 1 12357899999999999875 6799999999999999964321
Q ss_pred CCCCCCCCCCCcccEEEeCCCcEEEEEEEec----CcceeEEeeccccceeccceEEEEEe
Q 007633 478 SRGTYNKWDGVARSTTQVFPGAWTAILVYLD----NAGIWNLRAENLDTWYLGQEVYVNVI 534 (595)
Q Consensus 478 ~~~~~n~~~p~~rDTv~v~p~g~~~irf~ad----NPG~W~~HCHil~H~~~GM~~~~~V~ 534 (595)
...++.|||||.|++ +.+.|++++| ++|.||||||||+|||.|||..|+|.
T Consensus 469 -----~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 469 -----AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred -----CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 122467999999988 6666666654 67799999999999999999999984
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.5e-72 Score=606.68 Aligned_cols=404 Identities=16% Similarity=0.181 Sum_probs=296.0
Q ss_pred EEEEEEEEEEecCC-CeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCC
Q 007633 33 FYDWTISYVTASPL-GDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPA 111 (595)
Q Consensus 33 ~~~l~~~~~~~~~~-G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~P 111 (595)
.++|+++....+++ |..+++|+|||++|||+|++++||+|+|+|+|+|++++++||||+++... .+||++ ++|+|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37999999999888 56789999999999999999999999999999999999999999998754 577764 88999
Q ss_pred CCeEEEEEEECCceeeeEEccCc----chhhhcCceeeEEEeccCCCCCCCC--CCCCceeEeeeccccccHHHHHHHHh
Q 007633 112 GWNWTYQFQVKDQIGSFFYFPSL----DFQRAAGGYGGIIINNRDVIPLPFA--VPDGDITIFISDWYTKSHKKLRKDVE 185 (595)
Q Consensus 112 G~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~d~e~~l~l~d~~~~~~~~l~~~~~ 185 (595)
|++|+|+|++.+++||||||||. ..|+++||+|+|||+++.+.+.+++ ...+|++|+|+||+.+........ .
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~-~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN-E 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-c
Confidence 99999999997679999999995 4699999999999999765444433 234599999999998754432111 1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEE-eCCceeEEeecCcce-eee
Q 007633 186 NGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRI-QNHNLLLVETEGSYT-VQQ 263 (595)
Q Consensus 186 ~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i-~gh~~~via~DG~~~-~p~ 263 (595)
.......+|.++|||+.. |.++|++| +|||||||+|..+.+.|+| +||+|+||++||.++ +|.
T Consensus 202 ~~~~g~~gd~~lvNG~~~--------------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~ 266 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQS--------------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPV 266 (471)
T ss_pred cccCCccCCeeEECCccC--------------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCc
Confidence 122235679999999987 78999875 8999999999999999999 899999999997766 799
Q ss_pred eeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCC----CCCC---cceEEEEEecCCCCCCCCCCCCCCCCCCcc
Q 007633 264 NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSS----EWNK---VTGVAILHYSNSLGPASGPLPDPPNAYDTY 336 (595)
Q Consensus 264 ~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~----~~~~---~~~~ail~y~~~~~~~~~~lp~~p~~~~~~ 336 (595)
.++++.|+|||||||+|++++ .+ .+.+++........ .... .....+++....... ++.+.
T Consensus 267 ~~~~l~l~pGeR~dvlVd~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------- 334 (471)
T PRK10883 267 SVKQLSLAPGERREILVDMSN-GD-EVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLL--PLVTD-------- 334 (471)
T ss_pred EeCeEEECCCCeEEEEEECCC-Cc-eEEEECCCccccccccccccCCccccccceeEEEEccccc--cCCCC--------
Confidence 999999999999999999974 34 67776532110000 0000 001122333211100 00000
Q ss_pred cccccccccccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccc
Q 007633 337 FSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYK 416 (595)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~ 416 (595)
.++..+.... +.+. ....++++.+. + ..|.|||++|.+...
T Consensus 335 -------~~p~~l~~~~--~~~~------~~~~~~~~~l~--------~-~~~~INg~~~~~~~~--------------- 375 (471)
T PRK10883 335 -------NLPMRLLPDE--IMEG------SPIRSREISLG--------D-DLPGINGALWDMNRI--------------- 375 (471)
T ss_pred -------cCChhhcCCC--CCCC------CCcceEEEEec--------C-CcCccCCcccCCCcc---------------
Confidence 0000000000 0000 01112344332 1 147899998843111
Q ss_pred cCCCCCCCCCCCccceeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeC
Q 007633 417 LDFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVF 496 (595)
Q Consensus 417 ~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~ 496 (595)
.+.++.|++++|.|.|. +.|||||||+.|||++++.... ...+..|||||.|+
T Consensus 376 -----------------~~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~--------~~~~~gwkDTV~v~ 428 (471)
T PRK10883 376 -----------------DVTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMP--------FPEDRGWKDTVWVD 428 (471)
T ss_pred -----------------eeecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCC--------CccccCcCcEEEcC
Confidence 12468999999999886 5799999999999999964311 11234789999996
Q ss_pred CCcEEEEEEEecCcc----eeEEeeccccceeccceEEEEEecC
Q 007633 497 PGAWTAILVYLDNAG----IWNLRAENLDTWYLGQEVYVNVINP 536 (595)
Q Consensus 497 p~g~~~irf~adNPG----~W~~HCHil~H~~~GM~~~~~V~~~ 536 (595)
+.+.|++++|++| .||||||||+|||.|||..|+|..|
T Consensus 429 --~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 429 --GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred --CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 3599999999987 8999999999999999999999764
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.3e-58 Score=494.11 Aligned_cols=401 Identities=20% Similarity=0.242 Sum_probs=290.5
Q ss_pred ecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCC-CCCccCCCCeEEEEEEE
Q 007633 43 ASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCPIPAGWNWTYQFQV 121 (595)
Q Consensus 43 ~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~ 121 (595)
...++....+|+|||++|||+|++++||+|+|+++|+|.+++++||||+..+ +.+||++. +|+++.||++++|.|+.
T Consensus 45 ~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~ 122 (451)
T COG2132 45 AFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQ 122 (451)
T ss_pred eeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecC
Confidence 3445677889999999999999999999999999999988899999998665 78999988 99999999999999999
Q ss_pred CCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccccHHHHHHHHhCCCCCCCCCeEEEcCC
Q 007633 122 KDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGL 201 (595)
Q Consensus 122 ~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~l~~~~~~g~~~~~~d~~liNG~ 201 (595)
+++||||||+|.+.|+++||+|++||++....+. ..|.+..++..+|+.......... .........+..+|||+
T Consensus 123 -~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~ 197 (451)
T COG2132 123 -DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGA 197 (451)
T ss_pred -CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCC
Confidence 4788999999999999999999999999866444 447788888888887644332221 11112344689999996
Q ss_pred CCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceEEEEEE
Q 007633 202 GPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVT 281 (595)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~ 281 (595)
.. +.+.++. ++|||||+|++..+.+.+++.+++|+||++||.+++|..+|.+.++|||||||+++
T Consensus 198 ~~--------------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 198 IL--------------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred cc--------------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 65 5555555 56999999999888899999999999999999999998999999999999999999
Q ss_pred eCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCC----CCCCCCcccccccccccccccccCCCCCC
Q 007633 282 TDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPD----PPNAYDTYFSMNQARSIRWNVSAGAARPN 357 (595)
Q Consensus 282 ~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~----~p~~~~~~~~~~~~~~~~~~l~~~~~~p~ 357 (595)
+++ .+ .|.+.+...... ....+..... .....+.+... .+. .+. ... .....+.... ..
T Consensus 263 ~~~-~~-~~~l~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~---~~~--~~~~~~~~~~--~~ 325 (451)
T COG2132 263 MND-GG-AVTLTALGEDMP------DTLKGFRAPN-PILTPSYPVLNGRVGAPT-GDM---ADH--APVGLLVTIL--VE 325 (451)
T ss_pred cCC-CC-eEEEEeccccCC------ceeeeeeccc-cccccccccccccccCCC-cch---hhc--cccccchhhc--CC
Confidence 995 44 777777551111 1111121111 10000000000 000 000 000 0000000000 00
Q ss_pred CCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCCCccceeEEec
Q 007633 358 PQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKVDTSLING 437 (595)
Q Consensus 358 p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~ 437 (595)
+. ...+..+.+. ...+...|.+|+..|.+. ...+.+
T Consensus 326 ~~-------~~~~~~~~l~-----~~~~~~~~~~n~~~~~~~--------------------------------~~~~~~ 361 (451)
T COG2132 326 PG-------PNRDTDFHLI-----GGIGGYVWAINGKAFDDN--------------------------------RVTLIA 361 (451)
T ss_pred Cc-------ccccccchhh-----cccccccccccCccCCCC--------------------------------cCceee
Confidence 00 0001111111 111234577777766321 122467
Q ss_pred CCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcceeEEee
Q 007633 438 TYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIWNLRA 517 (595)
Q Consensus 438 ~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W~~HC 517 (595)
+.|++++|+|.|.+.+.||||+||+.|+|++.+. ......+.||||+.+.+++.++++|.+|+||.|+|||
T Consensus 362 ~~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~~~~---------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HC 432 (451)
T COG2132 362 KAGTRERWVLTNDTPMPHPFHLHGHFFQVLSGDA---------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHC 432 (451)
T ss_pred cCCCEEEEEEECCCCCccCeEEcCceEEEEecCC---------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEec
Confidence 8999999999999999999999999999999971 1233457899999999999999999999999999999
Q ss_pred ccccceeccceEEEEEec
Q 007633 518 ENLDTWYLGQEVYVNVIN 535 (595)
Q Consensus 518 Hil~H~~~GM~~~~~V~~ 535 (595)
|+++|++.|||..+.|..
T Consensus 433 H~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 433 HILEHEDNGMMGQFGVVP 450 (451)
T ss_pred cchhHhhcCCeeEEEecC
Confidence 999999999999998753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.6e-48 Score=399.01 Aligned_cols=265 Identities=19% Similarity=0.168 Sum_probs=219.2
Q ss_pred ccCCCeEEEEEEEEEEEecC-CCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCC--CCceeeeCCccCCCCCCCCCC
Q 007633 26 FGGDPYVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD--EPLLLTWNGVQHRKNSWQDGV 102 (595)
Q Consensus 26 ~a~~~~~~~~l~~~~~~~~~-~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~--~~~~iH~HG~~~~~~~~~DGv 102 (595)
++...+++|+|++++.+.+. +|..+.+|+|||++|||+|++++||+|+|+|+|+++ .++++||||. .++||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCC
Confidence 45667899999999999884 699999999999999999999999999999999986 5899999997 258998
Q ss_pred CC-CCCccCCCCeEEEEEEECCceeeeEEccC----cchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeeccccccH
Q 007633 103 LG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPS----LDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSH 177 (595)
Q Consensus 103 ~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~ 177 (595)
+. +| |+||++++|+|++ +++|||||||| +..|+.+||+|+|||++++..+ ..|+|++++++||+++..
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 76 65 9999999999999 58999999999 4689999999999999975422 458999999999998754
Q ss_pred HHHHHHHh-C-C-CCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEe
Q 007633 178 KKLRKDVE-N-G-VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVE 254 (595)
Q Consensus 178 ~~l~~~~~-~-g-~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via 254 (595)
........ . + .....++.++|||+...++ +.+++++|+++||||+|++..+.+.|+++||.+++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~-----------~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~ 238 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGALT-----------GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVW 238 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCCC-----------CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEE
Confidence 32110000 0 0 0124678999999965221 5679999999999999999988999999999999999
Q ss_pred ecCcceeeee--eeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCC
Q 007633 255 TEGSYTVQQN--YTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSL 319 (595)
Q Consensus 255 ~DG~~~~p~~--~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~ 319 (595)
.||.++.+.. ++++.|+||||+||+|++++ +| .|+++++...... +....++|+|++..
T Consensus 239 ~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG-~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 239 VTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PG-VYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred ECCcccCCCCCCcceEEECCCceEEEEEEeCC-Ce-EEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 9999998644 89999999999999999995 78 9999987653321 13477999997643
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=6.4e-37 Score=268.17 Aligned_cols=116 Identities=38% Similarity=0.767 Sum_probs=109.0
Q ss_pred EEEEEEecCCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCC-CCCccCCCCeE
Q 007633 37 TISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCPIPAGWNW 115 (595)
Q Consensus 37 ~~~~~~~~~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~ 115 (595)
+|++.++.++|..+++|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++...+|+||+++ +||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47899999998889999999999999999999999999999999999999999999998899999998 99999999999
Q ss_pred EEEEEECCceeeeEEccCcchhhhcCceeeEEEeccC
Q 007633 116 TYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRD 152 (595)
Q Consensus 116 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 152 (595)
+|+|++++++||||||||...|..+||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 9999997669999999999888889999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=2.9e-29 Score=228.32 Aligned_cols=109 Identities=28% Similarity=0.388 Sum_probs=100.1
Q ss_pred CCccceeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEE
Q 007633 427 APKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVY 506 (595)
Q Consensus 427 ~~~~~~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~ 506 (595)
..+.+..++.++.|++++|+|+|.+...|||||||++|+|++++.+.++......+++.+|.+|||+.|+++++++|||+
T Consensus 28 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~ 107 (138)
T PF07731_consen 28 PFFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFR 107 (138)
T ss_dssp TSSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEE
T ss_pred ccCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEE
Confidence 45567889999999999999999999999999999999999999888766666678999999999999999999999999
Q ss_pred ecCcceeEEeeccccceeccceEEEEEec
Q 007633 507 LDNAGIWNLRAENLDTWYLGQEVYVNVIN 535 (595)
Q Consensus 507 adNPG~W~~HCHil~H~~~GM~~~~~V~~ 535 (595)
+||||.|+||||+++|++.|||+.+.|.+
T Consensus 108 ~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 108 ADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp ETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.95 E-value=5.1e-28 Score=225.11 Aligned_cols=153 Identities=33% Similarity=0.528 Sum_probs=124.6
Q ss_pred CceeEeeeccccccHHHHHH-HHhCC----CCCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCC
Q 007633 163 GDITIFISDWYTKSHKKLRK-DVENG----VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGI 237 (595)
Q Consensus 163 ~e~~l~l~d~~~~~~~~l~~-~~~~g----~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~ 237 (595)
.|++|+++|||++....+.. .+..+ ...+++|+++|||++.++|.+... .....+.++|++|++|||||||+|+
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~-~~~~~~~~~v~~g~~~rlRliNa~~ 79 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADY-TGGEPPVIKVKPGERYRLRLINAGA 79 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGS-TTSTSGEEEEETTTEEEEEEEEESS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccc-cccccceEEEcCCcEEEEEEEeccC
Confidence 47899999999987765543 22222 226789999999999998875532 3345699999999999999999999
Q ss_pred CceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecC
Q 007633 238 STSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSN 317 (595)
Q Consensus 238 ~~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~ 317 (595)
.+.+.|+|+||+|+|||+||.+++|..++++.|++||||||+|++++++| +|||++................|+|+|.+
T Consensus 80 ~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g-~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 80 STSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPG-NYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp S-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSS-EEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCC-eEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999998677 99999973322222234578899999975
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.79 E-value=6.7e-19 Score=160.05 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=82.7
Q ss_pred CCCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCC---CCceeeeCCccCCCCCCCCCCCC-CCCccCCC---C-e--
Q 007633 45 PLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD---EPLLLTWNGVQHRKNSWQDGVLG-TNCPIPAG---W-N-- 114 (595)
Q Consensus 45 ~~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~---~~~~iH~HG~~~~~~~~~DGv~~-tq~~I~PG---~-~-- 114 (595)
..+....-+.++| .++|+|++++||+|+|+|+|.++ ..+.||+||...+..+.+||++. +||+|.|+ + .
T Consensus 36 ~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~ 114 (148)
T TIGR03095 36 MPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGY 114 (148)
T ss_pred CCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccce
Confidence 3456667788888 57999999999999999999964 34667777776555556999997 99998884 1 1
Q ss_pred EEEEEEECCceeeeEEccCcchhhhcCceeeEEEe
Q 007633 115 WTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIIN 149 (595)
Q Consensus 115 ~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 149 (595)
.++.|+++ ++||||||||...|+.+||+|+|||+
T Consensus 115 ~~~tf~f~-~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 115 TDFTYHFS-TAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eEEEEECC-CCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 34556653 89999999999999999999999995
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.64 E-value=8e-16 Score=169.48 Aligned_cols=100 Identities=15% Similarity=0.215 Sum_probs=86.3
Q ss_pred eeEEEEEEcCCCCCC--eEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCC---CCCCccCCCCeEEEEEEEC
Q 007633 48 DKQQVIGINGQFPGP--ILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL---GTNCPIPAGWNWTYQFQVK 122 (595)
Q Consensus 48 ~~~~~~~~Ng~~PgP--~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~---~tq~~I~PG~~~~Y~f~~~ 122 (595)
..+.+|+|||+.+++ .|++++||+|+|++.|.+..++.|||||+.... ...||.. ..+..|+||++++|+|.+
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v-~~~~G~~~~~~dTv~V~Pg~t~~~~f~a- 560 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSEL-EDGQGEFQVRKHTVDVPPGGKRSFRVTA- 560 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeee-ecCCCcccccCCceeeCCCCEEEEEEEC-
Confidence 357789999999874 799999999999999999999999999997642 2235642 234889999999999999
Q ss_pred CceeeeEEccCcchhhhcCceeeEEEe
Q 007633 123 DQIGSFFYFPSLDFQRAAGGYGGIIIN 149 (595)
Q Consensus 123 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 149 (595)
+++|+||||||...|...||++.+.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 689999999999999999999999874
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.56 E-value=5.2e-13 Score=137.19 Aligned_cols=244 Identities=14% Similarity=0.051 Sum_probs=153.2
Q ss_pred CCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCC-ceeeEEEeCCceeEEeecCcceeeeeeeEEEEe
Q 007633 193 PDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGIS-TSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIH 271 (595)
Q Consensus 193 ~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~ 271 (595)
-+.+++||+.. .|.|++++|++++++|.|.... ..+.+++|++. +.||... ...|.
T Consensus 47 ~~~~~~nG~~p-------------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~ 103 (311)
T TIGR02376 47 YQAMTFDGSVP-------------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVN 103 (311)
T ss_pred EEEEEECCccc-------------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeEC
Confidence 35789999864 3899999999999999998642 47889998874 4576431 22389
Q ss_pred ccceEEEEEEeCCCCCcceEEEEeecc--cCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 007633 272 VGQSFSFLVTTDQNASSDYYIVASPRF--VNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRWNV 349 (595)
Q Consensus 272 pGqR~dvlv~~~~~~g~~y~i~a~~~~--~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~l 349 (595)
|||++.+.++++ .+| .||.+++... ..+ ......+.|...... +.|.. +.+..+- .. .|.+
T Consensus 104 PG~t~ty~F~~~-~~G-ty~YH~H~~~~~~~q---~~~Gl~G~liV~~~~-----~~~~~----d~e~~l~-l~--d~~~ 166 (311)
T TIGR02376 104 PGETATLRFKAT-RPG-AFVYHCAPPGMVPWH---VVSGMNGAIMVLPRE-----GLPEY----DKEYYIG-ES--DLYT 166 (311)
T ss_pred CCCeEEEEEEcC-CCE-EEEEEcCCCCchhHH---hhcCcceEEEeeccC-----CCcCc----ceeEEEe-ee--eEec
Confidence 999999999987 578 9999998532 111 012233444444221 11110 1111100 00 1111
Q ss_pred ccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCCCc
Q 007633 350 SAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPK 429 (595)
Q Consensus 350 ~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~~~ 429 (595)
...... .+. ...+ ..... ... ...+++||+.... .|
T Consensus 167 ~~~~~~---~~~-----~~~~----~~~~~--~~~-~~~~~iNG~~~~~--~~--------------------------- 202 (311)
T TIGR02376 167 PKDEGE---GGA-----YEDD----VAAMR--TLT-PTHVVFNGAVGAL--TG--------------------------- 202 (311)
T ss_pred cccccc---ccc-----ccch----HHHHh--cCC-CCEEEECCccCCC--CC---------------------------
Confidence 100000 000 0000 00000 001 1246778875310 00
Q ss_pred cceeEEecCCCcEEEEEEEcCCC-ccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCC-cccEEEeCCCcEEEEEEEe
Q 007633 430 VDTSLINGTYKGFMEIIFQNNDT-TVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGV-ARSTTQVFPGAWTAILVYL 507 (595)
Q Consensus 430 ~~~~v~~~~~g~~ve~vi~N~~~-~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~-~rDTv~v~p~g~~~irf~a 507 (595)
.+.++.|+++.|.|.|.+. ..+.||++|++|.++..+++...+ +. ..|++.|.||....|.+++
T Consensus 203 ----~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~ 268 (311)
T TIGR02376 203 ----DNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTF 268 (311)
T ss_pred ----CcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEe
Confidence 1246789999999999876 569999999999999995432221 12 2689999999999999999
Q ss_pred cCcceeEEeeccccce-eccceEEEEEe
Q 007633 508 DNAGIWNLRAENLDTW-YLGQEVYVNVI 534 (595)
Q Consensus 508 dNPG~W~~HCHil~H~-~~GM~~~~~V~ 534 (595)
+.||.|.+|||...+. ..|+++.++|.
T Consensus 269 ~~pG~y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 269 EQPGVYAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred CCCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence 9999999999988776 67999888874
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.45 E-value=8.2e-13 Score=116.06 Aligned_cols=100 Identities=23% Similarity=0.133 Sum_probs=80.1
Q ss_pred HhhccccCCCeEEEEEEEE--EEEe---cCCCeeEEEE-EEcCCCCCCeEEeecCCEEEEEEEECCCCCc--eeeeCCcc
Q 007633 21 LLNGCFGGDPYVFYDWTIS--YVTA---SPLGDKQQVI-GINGQFPGPILNVTTNWNVVVNVKNDLDEPL--LLTWNGVQ 92 (595)
Q Consensus 21 ~~~~~~a~~~~~~~~l~~~--~~~~---~~~G~~~~~~-~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~--~iH~HG~~ 92 (595)
++....|.++.++|++++. +.++ ...|+....| ++|+++..+.|+|++||+|++++.|..+.++ .+++||+
T Consensus 14 ~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi- 92 (135)
T TIGR03096 14 LLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI- 92 (135)
T ss_pred HhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc-
Confidence 3444455555789999999 6666 3568888777 9999999999999999999999999876544 4555443
Q ss_pred CCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcc
Q 007633 93 HRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD 135 (595)
Q Consensus 93 ~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 135 (595)
+..|+||++.+|+|++ +++|+|||||...
T Consensus 93 -------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~H 121 (135)
T TIGR03096 93 -------------SEVIKAGETKTISFKA-DKAGAFTIWCQLH 121 (135)
T ss_pred -------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCC
Confidence 2468999999999999 7999999999754
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.10 E-value=6.8e-09 Score=113.94 Aligned_cols=250 Identities=14% Similarity=0.086 Sum_probs=148.9
Q ss_pred EEEEEEEEEEecCCCe--------------eEEEEEEcCCCCCCeEEeecCCEEEEEEEECCC-CCceeee-CCccCCCC
Q 007633 33 FYDWTISYVTASPLGD--------------KQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTW-NGVQHRKN 96 (595)
Q Consensus 33 ~~~l~~~~~~~~~~G~--------------~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~-~~~~iH~-HG~~~~~~ 96 (595)
++.|.++......+|. ....+++||+. .|.+.++ |.++++|+.|... ....+.+ .|... .-
T Consensus 181 d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~-~v 257 (523)
T PRK10965 181 DIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPL-YV 257 (523)
T ss_pred eeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceE-EE
Confidence 5556666555444432 23468999995 7898885 6699999999975 4556665 44321 12
Q ss_pred CCCCCCCC------CCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcC------ceeeEEEeccC---CCCCC----
Q 007633 97 SWQDGVLG------TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG------GYGGIIINNRD---VIPLP---- 157 (595)
Q Consensus 97 ~~~DGv~~------tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G------l~G~liV~~~~---~~~~~---- 157 (595)
-..||.+. ....|.|||+++..++++ +.|.++...-...+...+ -+-.+.|.... ....|
T Consensus 258 Ia~DG~~l~~P~~v~~l~lapGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~ 336 (523)
T PRK10965 258 IASDGGLLAEPVKVSELPILMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLA 336 (523)
T ss_pred EEeCCCcccCccEeCeEEECccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhc
Confidence 46788542 335689999999999985 567776655321111100 11123333111 00111
Q ss_pred -CC-CC------CCceeEeeeccccc----------cHHHHHH--------H--------HhCC----CC-CCCCCeEEE
Q 007633 158 -FA-VP------DGDITIFISDWYTK----------SHKKLRK--------D--------VENG----VD-LGVPDGILI 198 (595)
Q Consensus 158 -~~-~~------d~e~~l~l~d~~~~----------~~~~l~~--------~--------~~~g----~~-~~~~d~~li 198 (595)
.+ .. .+.+.+.+..+... ....... . ++.+ .. ......++|
T Consensus 337 ~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 416 (523)
T PRK10965 337 SLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKI 416 (523)
T ss_pred cCCCCCcccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 00 00 11223333221100 0000000 0 0000 00 000112489
Q ss_pred cCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceee---eeeeEEEEeccce
Q 007633 199 NGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQ---QNYTNMDIHVGQS 275 (595)
Q Consensus 199 NG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p---~~~d~l~i~pGqR 275 (595)
||+.+. ...+.++++.|++.+|+|+|.+....|.|||||+.|+|++.||....+ ...|++.+.+ ++
T Consensus 417 NG~~~~----------~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~ 485 (523)
T PRK10965 417 NGKAFD----------MNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GR 485 (523)
T ss_pred CCeECC----------CCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cE
Confidence 999872 123668899999999999999875589999999999999999987653 4679999976 88
Q ss_pred EEEEEEeCCC---CCcceEEEEeecc
Q 007633 276 FSFLVTTDQN---ASSDYYIVASPRF 298 (595)
Q Consensus 276 ~dvlv~~~~~---~g~~y~i~a~~~~ 298 (595)
..+++++++. +| .|.++++...
T Consensus 486 ~~i~~~f~~~~~~~g-~~~~HCHiL~ 510 (523)
T PRK10965 486 SEVLVKFDHDAPKEH-AYMAHCHLLE 510 (523)
T ss_pred EEEEEEecCCCCCCC-CEEEEeCchh
Confidence 9999999843 45 8889988743
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.00 E-value=2.8e-08 Score=110.28 Aligned_cols=234 Identities=16% Similarity=0.100 Sum_probs=141.6
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEE-eecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV-ETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~l~i~p 272 (595)
..+++||+.. .|.|++++|+++++++.|--.. ...+|.||-...-- ..||.. .+..-.|.|
T Consensus 23 ~~~~~NG~~P-------------GP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~----~vTq~pI~P 84 (539)
T TIGR03389 23 SILTVNGKFP-------------GPTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPA----YITQCPIQP 84 (539)
T ss_pred EEEEECCccc-------------CCEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCc----ccccCCcCC
Confidence 4789999875 4999999999999999998764 44555555432211 258864 234446899
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCc-----cccccccccccc
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDT-----YFSMNQARSIRW 347 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~-----~~~~~~~~~~~~ 347 (595)
|+++...+++.+.+| .||.+++..... ....|-|...... +.+.|......+. +|.......+
T Consensus 85 G~s~~Y~f~~~~~~G-T~WYHsH~~~~~------~Gl~G~lIV~~~~---~~~~~~~~~d~e~~l~l~Dw~~~~~~~~-- 152 (539)
T TIGR03389 85 GQSYVYNFTITGQRG-TLWWHAHISWLR------ATVYGAIVILPKP---GVPYPFPKPDREVPIILGEWWNADVEAV-- 152 (539)
T ss_pred CCeEEEEEEecCCCe-eEEEecCchhhh------ccceEEEEEcCCC---CCCCCCCCCCceEEEEecccccCCHHHH--
Confidence 999999999865678 999999874221 1123333232211 1111110000000 1111000000
Q ss_pred ccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCC
Q 007633 348 NVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRA 427 (595)
Q Consensus 348 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~ 427 (595)
+. ... .... ...-...+.|||+..... .+ . +
T Consensus 153 -~~----~~~------------------~~~~--~~~~~d~~liNG~~~~~~---------------~~--~---~---- 183 (539)
T TIGR03389 153 -IN----QAN------------------QTGG--APNVSDAYTINGHPGPLY---------------NC--S---S---- 183 (539)
T ss_pred -HH----HHH------------------hcCC--CCCccceEEECCCcCCCC---------------CC--C---C----
Confidence 00 000 0000 000012366777642100 00 0 0
Q ss_pred CccceeEEecCCCcEEEEEEEcCCC-ccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEE
Q 007633 428 PKVDTSLINGTYKGFMEIIFQNNDT-TVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVY 506 (595)
Q Consensus 428 ~~~~~~v~~~~~g~~ve~vi~N~~~-~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~ 506 (595)
....+++++.|+++.+.|.|.+. ..+.|||+||.|.|++.+.. + ..|...|++.|.+|+...|.++
T Consensus 184 --~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~-~----------~~P~~~~~l~i~~GqRydVlv~ 250 (539)
T TIGR03389 184 --KDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDAT-Y----------TKPFKTKTIVIGPGQTTNVLLT 250 (539)
T ss_pred --CCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCc-c----------cCceEeCeEEecCCCEEEEEEE
Confidence 01246788999999999999975 44899999999999999642 2 2466789999999999999999
Q ss_pred ecC-cceeEEeecc
Q 007633 507 LDN-AGIWNLRAEN 519 (595)
Q Consensus 507 adN-PG~W~~HCHi 519 (595)
+++ +|.|.++-+.
T Consensus 251 a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 251 ADQSPGRYFMAARP 264 (539)
T ss_pred CCCCCceEEEEEec
Confidence 986 7999888664
No 27
>PLN02835 oxidoreductase
Probab=98.98 E-value=3.4e-08 Score=108.92 Aligned_cols=219 Identities=17% Similarity=0.159 Sum_probs=133.6
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeE-EeecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLL-VETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+.. .|.|++++|+++++++.|--.. ...+|.||-.+.- -..||.+. ..-.|.|
T Consensus 49 ~~~~~NG~~P-------------GP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~P 109 (539)
T PLN02835 49 QVILINGQFP-------------GPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPP 109 (539)
T ss_pred EEEEECCcCC-------------CCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCC
Confidence 4789999875 4999999999999999998764 4455665554432 24699642 2357999
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCc-------cccccccccc
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDT-------YFSMNQARSI 345 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~-------~~~~~~~~~~ 345 (595)
|+++...+++.+.+| .||.+++...... ..+.+.-|+ ..... .+.|-.. ++. +|.......+
T Consensus 110 G~sf~Y~F~~~~q~G-T~WYHsH~~~q~~---~Gl~G~lIV-~~~~~----~~~p~~~--~d~e~~l~l~Dw~~~~~~~~ 178 (539)
T PLN02835 110 NSNYTYKFQTKDQIG-TFTYFPSTLFHKA---AGGFGAINV-YERPR----IPIPFPL--PDGDFTLLVGDWYKTSHKTL 178 (539)
T ss_pred CCcEEEEEEECCCCE-eEEEEeCccchhc---CcccceeEE-eCCCC----CCcCCCC--CCceEEEEeeccccCCHHHH
Confidence 999999998764578 9999997532110 112222233 22111 1111000 011 1110000000
Q ss_pred ccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCC
Q 007633 346 RWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMS 425 (595)
Q Consensus 346 ~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~ 425 (595)
...+..... . .. .....|||+..
T Consensus 179 ~~~~~~g~~------------------------~--~~--~d~~liNG~~~----------------------------- 201 (539)
T PLN02835 179 QQRLDSGKV------------------------L--PF--PDGVLINGQTQ----------------------------- 201 (539)
T ss_pred HHHhhcCCC------------------------C--CC--CceEEEccccC-----------------------------
Confidence 000000000 0 00 01234454321
Q ss_pred CCCccceeEEecCCCcEEEEEEEcCCCc-cceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEE
Q 007633 426 RAPKVDTSLINGTYKGFMEIIFQNNDTT-VQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAIL 504 (595)
Q Consensus 426 ~~~~~~~~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~ir 504 (595)
..+.++.|+++.|.|.|.+.. ..-||+.||+|.|++.+.... .|...|++.+.+|+...+.
T Consensus 202 -------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v-----------~p~~~~~l~i~~GqRydvl 263 (539)
T PLN02835 202 -------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVAVL 263 (539)
T ss_pred -------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccC-----------CCceeeEEEECcCceEEEE
Confidence 135688999999999999865 599999999999999965321 2455799999999999999
Q ss_pred EEecC-cceeEEee
Q 007633 505 VYLDN-AGIWNLRA 517 (595)
Q Consensus 505 f~adN-PG~W~~HC 517 (595)
++++. +|.|-++-
T Consensus 264 v~~~~~~g~y~i~a 277 (539)
T PLN02835 264 VTLNQSPKDYYIVA 277 (539)
T ss_pred EEcCCCCCcEEEEE
Confidence 99975 68776663
No 28
>PRK10883 FtsI repressor; Provisional
Probab=98.97 E-value=3e-08 Score=107.90 Aligned_cols=221 Identities=13% Similarity=0.072 Sum_probs=132.9
Q ss_pred EEEEEEcCCCCCCeEEeecCCEEEEEEEECCC-CCceeee-CCccCCCCCCCCCCC----C--CCCccCCCCeEEEEEEE
Q 007633 50 QQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTW-NGVQHRKNSWQDGVL----G--TNCPIPAGWNWTYQFQV 121 (595)
Q Consensus 50 ~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~-~~~~iH~-HG~~~~~~~~~DGv~----~--tq~~I~PG~~~~Y~f~~ 121 (595)
..++++||+. .|.|.|+.| ++++|+.|... ....+++ +|... .--..||.. . .+..|.|||+++.-.++
T Consensus 209 gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~-~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~ 285 (471)
T PRK10883 209 GDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPL-HVIAGDQGFLPAPVSVKQLSLAPGERREILVDM 285 (471)
T ss_pred CCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeE-EEEEeCCCcccCCcEeCeEEECCCCeEEEEEEC
Confidence 4568999994 799999875 89999999976 5567887 55422 124578543 2 34568999999999998
Q ss_pred CCceeeeEEccCcchhhhcCcee------------eEEEeccCCCCCCCCCCCCceeEeeeccccccHHHHHH-HHhCCC
Q 007633 122 KDQIGSFFYFPSLDFQRAAGGYG------------GIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRK-DVENGV 188 (595)
Q Consensus 122 ~~~~Gt~wYH~H~~~q~~~Gl~G------------~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~l~~-~~~~g~ 188 (595)
. +.+.+.+++-.......++.+ .+-++.....+ +. ....+..+............. .+.-+
T Consensus 286 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~~~~~l~- 359 (471)
T PRK10883 286 S-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRSREISLG- 359 (471)
T ss_pred C-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcceEEEEec-
Confidence 4 566777776321111111111 11111111000 00 000000000000000000000 00000
Q ss_pred CCCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceee---eee
Q 007633 189 DLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQ---QNY 265 (595)
Q Consensus 189 ~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p---~~~ 265 (595)
.+.+.|||+.+.. ....++++.|++.+|+|.|. ..|.||||||.|+|++.||....| ...
T Consensus 360 ----~~~~~INg~~~~~----------~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~~gwk 422 (471)
T PRK10883 360 ----DDLPGINGALWDM----------NRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPEDRGWK 422 (471)
T ss_pred ----CCcCccCCcccCC----------CcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCccccCcC
Confidence 1234699998721 12347899999999999885 379999999999999999986543 346
Q ss_pred eEEEEeccceEEEEEEeCCCCCc--ceEEEEeecc
Q 007633 266 TNMDIHVGQSFSFLVTTDQNASS--DYYIVASPRF 298 (595)
Q Consensus 266 d~l~i~pGqR~dvlv~~~~~~g~--~y~i~a~~~~ 298 (595)
|++.+. +++.+++++++..++ .|.++++...
T Consensus 423 DTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLe 455 (471)
T PRK10883 423 DTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLE 455 (471)
T ss_pred cEEEcC--CeEEEEEEecCCCCCCCcEEeeccccc
Confidence 999993 579999999965542 5888887653
No 29
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.92 E-value=1.6e-09 Score=98.18 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=74.3
Q ss_pred CCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCC-------------CC--CCCccCCCCeEEEEEEECCce
Q 007633 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGV-------------LG--TNCPIPAGWNWTYQFQVKDQI 125 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv-------------~~--tq~~I~PG~~~~Y~f~~~~~~ 125 (595)
.+.+.++.|+.|++.+.|....++.+|+||....-....++. ++ ....|+||+..+.+|++ +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 579999999999999999999999999999987421111111 12 33568999999999999 699
Q ss_pred eeeEEccCcchhhhcCceeeEEEecc
Q 007633 126 GSFFYFPSLDFQRAAGGYGGIIINNR 151 (595)
Q Consensus 126 Gt~wYH~H~~~q~~~Gl~G~liV~~~ 151 (595)
|.|.||||...|...||.+.+.|.+.
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 99999999999999999999999874
No 30
>PLN02354 copper ion binding / oxidoreductase
Probab=98.89 E-value=8.9e-08 Score=105.78 Aligned_cols=230 Identities=17% Similarity=0.118 Sum_probs=138.0
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeE-EeecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLL-VETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+.. .|.|++++|+++++++.|.... ...+|.||-...- -..||.+. ..-.|.|
T Consensus 47 ~~~~iNGq~P-------------GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~P 107 (552)
T PLN02354 47 QVILINGQFP-------------GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPP 107 (552)
T ss_pred EEEEECCCCc-------------CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCC
Confidence 4789999875 4999999999999999998753 4445555543332 24799652 3458999
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCc-----cccccccccccc
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDT-----YFSMNQARSIRW 347 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~-----~~~~~~~~~~~~ 347 (595)
|+.+...+++++.+| .||.+++...... ..+.+ +++-.. .. ..+.|-.....+. +|.......+..
T Consensus 108 G~sf~Y~F~~~~q~G-T~WYHsH~~~Q~~---~Gl~G-~lII~~-~~---~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~ 178 (552)
T PLN02354 108 GTNFTYHFQPKDQIG-SYFYYPSTGMHRA---AGGFG-GLRVNS-RL---LIPVPYADPEDDYTVLIGDWYTKSHTALKK 178 (552)
T ss_pred CCcEEEEEEeCCCCc-ceEEecCccceec---CCccc-eEEEcC-Cc---CCCCCCCCcCceEEEEeeeeccCCHHHHHH
Confidence 999999999864578 9999987632111 01222 233222 11 0011110000000 111100000000
Q ss_pred ccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCC
Q 007633 348 NVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRA 427 (595)
Q Consensus 348 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~ 427 (595)
.+... . .........|||+.... +
T Consensus 179 ~~~~g------------------------~----~~~~~d~~liNG~~~~~----------------~------------ 202 (552)
T PLN02354 179 FLDSG------------------------R----TLGRPDGVLINGKSGKG----------------D------------ 202 (552)
T ss_pred HHhcC------------------------C----CCCCCCeEEEeCCcCCC----------------C------------
Confidence 00000 0 00001134566653210 0
Q ss_pred CccceeEEecCCCcEEEEEEEcCCCc-cceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEE
Q 007633 428 PKVDTSLINGTYKGFMEIIFQNNDTT-VQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVY 506 (595)
Q Consensus 428 ~~~~~~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~ 506 (595)
......++++.|+++.|.|.|.+.. ..-||+.||.|.|++.+.... .|...|++.|.+|....+.++
T Consensus 203 -~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydVlv~ 270 (552)
T PLN02354 203 -GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHV-----------LQNDYDSLDVHVGQCFSVLVT 270 (552)
T ss_pred -CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCccc-----------CCcceeEEEEccCceEEEEEE
Confidence 0013457889999999999998764 589999999999999964322 244579999999999999999
Q ss_pred ecC-cceeEEeecc
Q 007633 507 LDN-AGIWNLRAEN 519 (595)
Q Consensus 507 adN-PG~W~~HCHi 519 (595)
++. +|.|-++-..
T Consensus 271 a~~~~g~Y~i~a~~ 284 (552)
T PLN02354 271 ANQAPKDYYMVAST 284 (552)
T ss_pred CCCCCCcEEEEEec
Confidence 975 7988777653
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=98.89 E-value=1.3e-07 Score=104.21 Aligned_cols=220 Identities=14% Similarity=0.162 Sum_probs=129.5
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEE-eecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV-ETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+.. .|.|++++|+++++++.|--.+ ...+|.||..+.-- .+||.+- .+-.|.|
T Consensus 46 ~~~~vNG~~P-------------GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~P 106 (545)
T PLN02168 46 QVIVINDMFP-------------GPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVRG-----TNCPILP 106 (545)
T ss_pred EEEEECCcCC-------------CCcEEEECCCEEEEEEEeCCCC-CccEeeCCccCCCCCCcCCCCC-----CcCCCCC
Confidence 4689999875 4999999999999999998764 45556666443222 2599652 3357999
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccccccccccC
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRWNVSAG 352 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~l~~~ 352 (595)
|+++...+++++.+| .||.+++....-. ....|-|....... ...+.+.... +....+. +|.....
T Consensus 107 G~sftY~F~~~~q~G-T~WYHsH~~~Q~~-----~GL~G~lII~~~~~-~~~p~~~~d~--e~~l~l~-----Dw~~~~~ 172 (545)
T PLN02168 107 GTNWTYRFQVKDQIG-SYFYFPSLLLQKA-----AGGYGAIRIYNPEL-VPVPFPKPDE--EYDILIG-----DWFYADH 172 (545)
T ss_pred CCcEEEEEEeCCCCc-eEEEecChhhhhh-----CcceeEEEEcCCcc-cCcCcCcccc--eeeEEEE-----ecCCCCH
Confidence 999999999865588 9999998642111 11223222322110 1111111110 0000000 0100000
Q ss_pred CCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCCCccce
Q 007633 353 AARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKVDT 432 (595)
Q Consensus 353 ~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 432 (595)
. ..... +.... .........|||+.- ..
T Consensus 173 ------~--------~~~~~--~~~g~--~~~~~d~~liNG~~~----------------------------------~~ 200 (545)
T PLN02168 173 ------T--------VMRAS--LDNGH--SLPNPDGILFNGRGP----------------------------------EE 200 (545)
T ss_pred ------H--------HHHhh--hhcCC--CCCCCCEEEEeccCC----------------------------------Cc
Confidence 0 00000 00000 000001234555421 01
Q ss_pred eEEecCCCcEEEEEEEcCCCc-cceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecC
Q 007633 433 SLINGTYKGFMEIIFQNNDTT-VQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDN 509 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adN 509 (595)
..++++.|+++.+.|.|.+.. .+.|++.||+|+|++.+... ..|...|++.|.+|+..-+.+++++
T Consensus 201 ~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 201 TFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTY-----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred ceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeE-----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 246788999999999998754 59999999999999986432 2355579999999999999999974
No 32
>PLN02792 oxidoreductase
Probab=98.88 E-value=1.2e-07 Score=104.34 Aligned_cols=225 Identities=16% Similarity=0.193 Sum_probs=135.6
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEe---ecCcceeeeeeeEEEE
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVE---TEGSYTVQQNYTNMDI 270 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via---~DG~~~~p~~~d~l~i 270 (595)
..++|||+.. .|+|++++|+++++++.|-..+ . ..||-|-+.+.. +||... .+-.|
T Consensus 36 ~~~~vNGq~P-------------GP~I~~~~GD~v~V~v~N~L~~-~--ttiHWHGl~q~~~~~~DGv~~-----tqcPI 94 (536)
T PLN02792 36 RGILINGQFP-------------GPEIRSLTNDNLVINVHNDLDE-P--FLLSWNGVHMRKNSYQDGVYG-----TTCPI 94 (536)
T ss_pred EEEEECCCCC-------------CCcEEEECCCEEEEEEEeCCCC-C--cCEeCCCcccCCCCccCCCCC-----CcCcc
Confidence 4789999975 4999999999999999998653 3 355555555544 799642 23589
Q ss_pred eccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCC---ccccccccccccc
Q 007633 271 HVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYD---TYFSMNQARSIRW 347 (595)
Q Consensus 271 ~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~---~~~~~~~~~~~~~ 347 (595)
.||+.+...+++++.+| .||.+++...... ..+.+ +++-+..... ..+.+....... .+|.......+..
T Consensus 95 ~PG~sftY~F~~~~q~G-T~WYHsH~~~q~~---~Gl~G-~liI~~~~~~--~~p~~~~d~e~~i~l~Dw~~~~~~~~~~ 167 (536)
T PLN02792 95 PPGKNYTYDFQVKDQVG-SYFYFPSLAVQKA---AGGYG-SLRIYSLPRI--PVPFPEPAGDFTFLIGDWYRRNHTTLKK 167 (536)
T ss_pred CCCCcEEEEEEeCCCcc-ceEEecCcchhhh---ccccc-ceEEeCCccc--CcCCCcccceeEEEecccccCCHHHHHH
Confidence 99999999999865578 9999998642111 01222 2333331110 111111000000 0111100000000
Q ss_pred ccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCC
Q 007633 348 NVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRA 427 (595)
Q Consensus 348 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~ 427 (595)
.+... .. .........|||+...
T Consensus 168 ~~~~g------------------------~~---~~~~~d~~liNG~~~~------------------------------ 190 (536)
T PLN02792 168 ILDGG------------------------RK---LPLMPDGVMINGQGVS------------------------------ 190 (536)
T ss_pred Hhhcc------------------------Cc---CCCCCCEEEEeccCCC------------------------------
Confidence 00000 00 0000012445554210
Q ss_pred CccceeEEecCCCcEEEEEEEcCCCc-cceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEE
Q 007633 428 PKVDTSLINGTYKGFMEIIFQNNDTT-VQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVY 506 (595)
Q Consensus 428 ~~~~~~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~ 506 (595)
....+.++.|+++.+.|.|.+.. ..-|++.||+|.|++.+.... .|...|++.|.+|....+.++
T Consensus 191 ---~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 191 ---YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred ---CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEEEEE
Confidence 01346788999999999998765 589999999999999965322 245579999999999999999
Q ss_pred ecC-cceeEEee
Q 007633 507 LDN-AGIWNLRA 517 (595)
Q Consensus 507 adN-PG~W~~HC 517 (595)
++. +|.|-+.-
T Consensus 257 a~~~~g~Y~i~a 268 (536)
T PLN02792 257 MDQPPQNYSIVV 268 (536)
T ss_pred cCCCCceEEEEE
Confidence 976 57766653
No 33
>PLN02991 oxidoreductase
Probab=98.88 E-value=1.1e-07 Score=104.39 Aligned_cols=221 Identities=18% Similarity=0.167 Sum_probs=133.3
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCcee-EEeecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLL-LVETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~-via~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+.. .|.|++++|+++++++.|.-.. ...+|.||-... --.+||.+. ..-.|.|
T Consensus 48 ~~~~vNG~~P-------------GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~P 108 (543)
T PLN02991 48 QGILINGKFP-------------GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG-----TTCPIPP 108 (543)
T ss_pred EEEEEcCCCC-------------CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC-----CCCccCC
Confidence 4789999875 4999999999999999998653 444555554432 134799642 2457999
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCc-----cccccccccccc
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDT-----YFSMNQARSIRW 347 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~-----~~~~~~~~~~~~ 347 (595)
|+++...+++++.+| .||.+++...... ..+.+ +++-..... .+.|......+. +|.......+..
T Consensus 109 G~sftY~F~~~~q~G-T~WYHsH~~~q~~---~Gl~G-~lIV~~~~~----~~~p~~~~d~d~~i~l~DW~~~~~~~~~~ 179 (543)
T PLN02991 109 GKNYTYALQVKDQIG-SFYYFPSLGFHKA---AGGFG-AIRISSRPL----IPVPFPAPADDYTVLIGDWYKTNHKDLRA 179 (543)
T ss_pred CCcEEEEEEeCCCCc-ceEEecCcchhhh---CCCee-eEEEeCCcc----cCcccccccceeEEEecceecCCHHHHHH
Confidence 999999999865578 9999998643211 11222 233332111 111110000000 111100000000
Q ss_pred ccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCC
Q 007633 348 NVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRA 427 (595)
Q Consensus 348 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~ 427 (595)
.+... . .........|||+..
T Consensus 180 ~~~~~------------------------~----~~~~~d~~liNG~~~------------------------------- 200 (543)
T PLN02991 180 QLDNG------------------------G----KLPLPDGILINGRGS------------------------------- 200 (543)
T ss_pred HhhcC------------------------C----CCCCCCEEEEccCCC-------------------------------
Confidence 00000 0 000001234455421
Q ss_pred CccceeEEecCCCcEEEEEEEcCCCc-cceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEE
Q 007633 428 PKVDTSLINGTYKGFMEIIFQNNDTT-VQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVY 506 (595)
Q Consensus 428 ~~~~~~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~ 506 (595)
...++++.|+++.+.|.|.+.. .+-|+|.||.|+|++.+.. + ..|...|++.|.+|...-+.++
T Consensus 201 ----~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~-~----------~~p~~~~~l~i~~GQRydvlv~ 265 (543)
T PLN02991 201 ----GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGT-H----------TIQTPFSSLDVHVGQSYSVLIT 265 (543)
T ss_pred ----CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCc-c----------ccceeeeEEEEcCCcEEEEEEE
Confidence 1246788999999999998765 4899999999999999643 2 2356679999999999999999
Q ss_pred ecCc-ceeEEe
Q 007633 507 LDNA-GIWNLR 516 (595)
Q Consensus 507 adNP-G~W~~H 516 (595)
+|++ |.|-+.
T Consensus 266 a~~~~~~y~i~ 276 (543)
T PLN02991 266 ADQPAKDYYIV 276 (543)
T ss_pred CCCCCCcEEEE
Confidence 9874 644433
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.79 E-value=3.4e-07 Score=101.39 Aligned_cols=233 Identities=15% Similarity=0.163 Sum_probs=136.4
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEE-eecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV-ETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+.. .|.|++++|+++++++.|-... ...+|.||..+..- ..||... ..-.|.|
T Consensus 49 ~vi~vNGq~P-------------GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~P 109 (596)
T PLN00044 49 EAIGINGQFP-------------GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPA 109 (596)
T ss_pred EEEEEcCcCC-------------CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCC
Confidence 4789999875 4999999999999999998764 55666666554432 4799642 4468999
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCC-----ccccccccccccc
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYD-----TYFSMNQARSIRW 347 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~-----~~~~~~~~~~~~~ 347 (595)
|+++...+++++.+| .||.+++...... ..+.+ +++-+..... ..|.+. +...+ .+|.......+..
T Consensus 110 G~sftY~F~~~dq~G-T~WYHsH~~~Q~~---~Gl~G-alII~~~~~~--~~P~~~-~~~~e~~i~l~DW~~~~~~~~~~ 181 (596)
T PLN00044 110 GWNWTYQFQVKDQVG-SFFYAPSTALHRA---AGGYG-AITINNRDVI--PIPFGF-PDGGDITLFIADWYARDHRALRR 181 (596)
T ss_pred CCcEEEEEEeCCCCc-eeEeeccchhhhh---CcCee-EEEEcCcccc--cccccC-CcccceEEEecccccCCHHHHHH
Confidence 999999999965678 9999997643111 01222 3333321111 111111 00000 0121111000000
Q ss_pred ccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCC
Q 007633 348 NVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRA 427 (595)
Q Consensus 348 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~ 427 (595)
.+..+...+ .. ....|||+.-...+ ... ..++
T Consensus 182 ~l~~g~~~~-------------------------~~---d~~lING~g~~~~n------------~~~-------~~~~- 213 (596)
T PLN00044 182 ALDAGDLLG-------------------------AP---DGVLINAFGPYQYN------------DSL-------VPPG- 213 (596)
T ss_pred HHhcCCCCC-------------------------CC---CceEEcccCccccC------------Ccc-------ccCC-
Confidence 000000000 00 01224443210000 000 0000
Q ss_pred CccceeEEecCCCcEEEEEEEcCCCc-cceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEE
Q 007633 428 PKVDTSLINGTYKGFMEIIFQNNDTT-VQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVY 506 (595)
Q Consensus 428 ~~~~~~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~ 506 (595)
....+++++.|+++.|.|.|.+.. .--|+|.||+|.|++.+ |.+ ..|..-|.+.|.+|...-+.++
T Consensus 214 --~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~D-G~~----------v~P~~vd~i~I~~GQRydVLV~ 280 (596)
T PLN00044 214 --ITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAE-GSY----------TSQQNYTNLDIHVGQSYSFLLT 280 (596)
T ss_pred --CccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeC-Ccc----------cCceeeeeEEEcCCceEEEEEE
Confidence 012367899999999999998754 47899999999999996 332 2466789999999999999999
Q ss_pred ecCc-c--eeE
Q 007633 507 LDNA-G--IWN 514 (595)
Q Consensus 507 adNP-G--~W~ 514 (595)
+|.+ | .|+
T Consensus 281 a~q~~~~~Y~i 291 (596)
T PLN00044 281 MDQNASTDYYV 291 (596)
T ss_pred CCCCCCCceEE
Confidence 9875 5 466
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.71 E-value=1.2e-06 Score=97.09 Aligned_cols=241 Identities=15% Similarity=0.119 Sum_probs=142.1
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeE-EeecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLL-VETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+.. .|+|++++|+++++++.|.-......+|.||-.+.- -..||.+. +..-.|.|
T Consensus 28 ~~~~~NG~~P-------------GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~P 90 (538)
T TIGR03390 28 YSVVVNGTSP-------------GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPP 90 (538)
T ss_pred EEEEECCcCC-------------CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCC
Confidence 4799999875 499999999999999999754334556666654432 24799764 23346889
Q ss_pred cceEEEEEEeC-CCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCC--Cccccccccccccccc
Q 007633 273 GQSFSFLVTTD-QNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAY--DTYFSMNQARSIRWNV 349 (595)
Q Consensus 273 GqR~dvlv~~~-~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~--~~~~~~~~~~~~~~~l 349 (595)
|+.+...++++ +.+| .||.+++... +. ....|.|...... ..+..-..+.. -.+|.......+...+
T Consensus 91 G~sf~Y~f~~~~~q~G-T~WYHsH~~~--Q~----~~l~G~lIV~~~~---~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 160 (538)
T TIGR03390 91 GHFFDYEIKPEPGDAG-SYFYHSHVGF--QA----VTAFGPLIVEDCE---PPPYKYDDERILLVSDFFSATDEEIEQGL 160 (538)
T ss_pred CCcEEEEEEecCCCCe-eeEEecCCch--hh----hcceeEEEEccCC---ccCCCccCcEEEEEeCCCCCCHHHHHhhh
Confidence 99999999875 3578 9999998642 21 1133433333221 10110000000 0011111100000000
Q ss_pred ccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCCCc
Q 007633 350 SAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPK 429 (595)
Q Consensus 350 ~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~~~ 429 (595)
.. .+ .. .........|||+......... ..+ ...|
T Consensus 161 ~~---~~--------------------~~---~~~~~d~~liNG~~~~~~~~~~-------~~~------------~~~~ 195 (538)
T TIGR03390 161 LS---TP--------------------FT---WSGETEAVLLNGKSGNKSFYAQ-------INP------------SGSC 195 (538)
T ss_pred hc---cC--------------------Cc---cCCCCceEEECCcccccccccc-------ccC------------CCCC
Confidence 00 00 00 0001123567776421100000 000 0001
Q ss_pred cceeEEecCCCcEEEEEEEcCCCc-cceeeecCce-EEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEe
Q 007633 430 VDTSLINGTYKGFMEIIFQNNDTT-VQSYHMDGYA-FFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYL 507 (595)
Q Consensus 430 ~~~~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~-F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~a 507 (595)
....+.++.|+++.+.|.|.+.. ..-|+++||. |+|++.+.. +..|...|++.|.+|+..-|.+++
T Consensus 196 -~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~ 263 (538)
T TIGR03390 196 -MLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKA 263 (538)
T ss_pred -cceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEEC
Confidence 13468899999999999999865 4899999999 999999653 234677899999999999999999
Q ss_pred cCc--------ceeEEeec
Q 007633 508 DNA--------GIWNLRAE 518 (595)
Q Consensus 508 dNP--------G~W~~HCH 518 (595)
+++ |.|.++--
T Consensus 264 ~~~~~~~~~~~~~Y~ir~~ 282 (538)
T TIGR03390 264 KTEDELCGGDKRQYFIQFE 282 (538)
T ss_pred CCccccccCCCCcEEEEEe
Confidence 864 77766644
No 36
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.66 E-value=5.2e-07 Score=98.30 Aligned_cols=231 Identities=13% Similarity=0.010 Sum_probs=142.4
Q ss_pred CeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECC-CCCceeeeCCccCCCCCCCCCCC----C-CCCccCCCCeEEEEEE
Q 007633 47 GDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDL-DEPLLLTWNGVQHRKNSWQDGVL----G-TNCPIPAGWNWTYQFQ 120 (595)
Q Consensus 47 G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DGv~----~-tq~~I~PG~~~~Y~f~ 120 (595)
|.......+||+. -|.+ +.++..+++|+.|.- .....+++.|.... .-..||.+ . .+..+.|||+++..-.
T Consensus 186 ~~~g~~~~vnG~~-~p~~-~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~-Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFK-AVPGGVVRLRLLNAGNARTYHLALGGGPLT-VIAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-ccee-ecCCCeEEEEEEecCCceEEEEEecCceEE-EEEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 3445566777743 3444 455555999999997 56666666655443 23467765 2 4467999999999998
Q ss_pred ECCceeeeEEccCcchhhhcCceeeEEEeccCCCCCCCCCCCCceeEeeecc-ccccHHHHHHHH-hCC----C-----C
Q 007633 121 VKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDW-YTKSHKKLRKDV-ENG----V-----D 189 (595)
Q Consensus 121 ~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~-~~~~~~~l~~~~-~~g----~-----~ 189 (595)
.+ ..|++=+.|.. .+..+-+.+..-...... .++...+.+......|- ...........+ +.+ . .
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILT--PSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG 338 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeeccccccc--cccccccccccCCCcchhhccccccchhhcCCCcccccccchhhc
Confidence 85 47888888876 222222222222221110 11111111111111110 000000000000 010 0 0
Q ss_pred CCCCCeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcce---eeeeee
Q 007633 190 LGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT---VQQNYT 266 (595)
Q Consensus 190 ~~~~d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~---~p~~~d 266 (595)
......+.+||+.+.. ....+.++.|+++||++.|-+. ..|.||+||+.|+|++.| ... .+...|
T Consensus 339 ~~~~~~~~~n~~~~~~----------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kD 406 (451)
T COG2132 339 GIGGYVWAINGKAFDD----------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKD 406 (451)
T ss_pred ccccccccccCccCCC----------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccce
Confidence 0112458889988731 2477899999999999999998 699999999999999999 222 246789
Q ss_pred EEEEeccceEEEEEEeCCCCCcceEEEEeecc
Q 007633 267 NMDIHVGQSFSFLVTTDQNASSDYYIVASPRF 298 (595)
Q Consensus 267 ~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~ 298 (595)
++.+.+|+++.+.++++ .+| .|.++++...
T Consensus 407 Tv~v~~~~~~~v~~~a~-~~g-~~~~HCH~l~ 436 (451)
T COG2132 407 TVLVAPGERLLVRFDAD-YPG-PWMFHCHILE 436 (451)
T ss_pred EEEeCCCeEEEEEEeCC-CCC-ceEEeccchh
Confidence 99999999999999988 567 9999998754
No 37
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.65 E-value=1.9e-06 Score=95.67 Aligned_cols=254 Identities=13% Similarity=0.108 Sum_probs=140.5
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEE-eecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV-ETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+.. .|.|++++|+++++++.|........+|.||+...-- ..||..- +..-.|.|
T Consensus 21 ~~~~~Ng~~p-------------GP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~P 83 (541)
T TIGR03388 21 LVIGINGQFP-------------GPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINP 83 (541)
T ss_pred eEEEECCcCC-------------CCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCC
Confidence 4789999875 4999999999999999998654567788888753221 2588542 24457899
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCC--Ccccccccccccccccc
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAY--DTYFSMNQARSIRWNVS 350 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~--~~~~~~~~~~~~~~~l~ 350 (595)
|+++...+++++ +| .||.+++...... ....+-|....... ...+..-..+.. -.+|...........+.
T Consensus 84 G~s~~y~f~~~~-~G-t~wyH~H~~~q~~-----~Gl~G~liV~~~~~-~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~ 155 (541)
T TIGR03388 84 GETFIYNFVVDR-PG-TYFYHGHYGMQRS-----AGLYGSLIVDVPDG-EKEPFHYDGEFNLLLSDWWHKSIHEQEVGLS 155 (541)
T ss_pred CCEEEEEEEcCC-CE-EEEEEecchHHhh-----ccceEEEEEecCCC-CCCCccccceEEEEeecccCCCHHHHHhhcc
Confidence 999999999874 77 9999998632111 12233333332211 011111000000 00111110000000000
Q ss_pred cCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCC-CCCcHhhhhhcCCCCccccCCCCCCCCCCCc
Q 007633 351 AGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLP-PSTPLMLAQQFNIPGAYKLDFPYKLMSRAPK 429 (595)
Q Consensus 351 ~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~-~~~P~~~~~~~~~~~~~~~~~~~~p~~~~~~ 429 (595)
. .+. . .........+||+.... ...... ... ..+.+ ..++...
T Consensus 156 ----~-~~~----------------~-----~~~~~d~~liNG~g~~~~~~~~~~-~~~--~~~~~-------~~~~~~~ 199 (541)
T TIGR03388 156 ----S-KPM----------------R-----WIGEPQSLLINGRGQFNCSLAAKF-SST--NLPQC-------NLKGNEQ 199 (541)
T ss_pred ----c-CCC----------------c-----CCCCCcceEECCCCCCCCcccccc-Ccc--ccchh-------hccCCCC
Confidence 0 000 0 00001123456543110 000000 000 00000 0000000
Q ss_pred cceeEEecCCCcEEEEEEEcCCC-ccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEec
Q 007633 430 VDTSLINGTYKGFMEIIFQNNDT-TVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLD 508 (595)
Q Consensus 430 ~~~~v~~~~~g~~ve~vi~N~~~-~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~ad 508 (595)
....+++++.|+++.|.|.|.+. ..+.|+++||+|+|++.+.+. ..|..-|.+.|.+|+..-+.++++
T Consensus 200 ~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~-----------v~P~~v~~l~i~~GqR~dvlv~~~ 268 (541)
T TIGR03388 200 CAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNY-----------VEPFTVKDIDIYSGETYSVLLTTD 268 (541)
T ss_pred CCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEe-----------cccceeCeEEecCCCEEEEEEeCC
Confidence 11235789999999999999874 569999999999999997542 235667999999999999999997
Q ss_pred C-cc-eeEEeecc
Q 007633 509 N-AG-IWNLRAEN 519 (595)
Q Consensus 509 N-PG-~W~~HCHi 519 (595)
. || .|-++--.
T Consensus 269 ~~~~~~y~ira~~ 281 (541)
T TIGR03388 269 QDPSRNYWISVGV 281 (541)
T ss_pred CCCCCcEEEEEec
Confidence 5 44 56666443
No 38
>PLN02604 oxidoreductase
Probab=98.64 E-value=1.5e-06 Score=96.99 Aligned_cols=250 Identities=15% Similarity=0.148 Sum_probs=142.4
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeE-EeecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLL-VETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+.. .|.++++.|++++++|.|......+.+|.||+...- ...||.. .++...|.|
T Consensus 44 ~~~~~Ng~~p-------------gP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~----~~tq~~i~p 106 (566)
T PLN02604 44 LVITINGRSP-------------GPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTE----GVTQCPILP 106 (566)
T ss_pred eEEEECCccC-------------CCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCC----ccccCccCC
Confidence 4689999885 389999999999999999875457788998885422 1258843 134568899
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCC--CCcccccccccccccccc
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNA--YDTYFSMNQARSIRWNVS 350 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~--~~~~~~~~~~~~~~~~l~ 350 (595)
||++...++++ .+| .||.+++...... ....+-|.+..... ...+.+...+. .-.+|...........+.
T Consensus 107 g~s~~y~f~~~-~~G-t~wyH~H~~~q~~-----~Gl~G~liV~~~~~-~~~p~~~d~d~~l~l~Dw~~~~~~~~~~~~~ 178 (566)
T PLN02604 107 GETFTYEFVVD-RPG-TYLYHAHYGMQRE-----AGLYGSIRVSLPRG-KSEPFSYDYDRSIILTDWYHKSTYEQALGLS 178 (566)
T ss_pred CCeEEEEEEcC-CCE-EEEEeeCcHHHHh-----CCCeEEEEEEecCC-CCCccccCcceEEEeeccccCCHHHHHHhhc
Confidence 99999999997 578 9999998642111 12333333432211 01111110000 000121111100000000
Q ss_pred cCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCC-C--CCcHhhhhhcCCCCccccCCCCCCCCCC
Q 007633 351 AGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLP-P--STPLMLAQQFNIPGAYKLDFPYKLMSRA 427 (595)
Q Consensus 351 ~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~-~--~~P~~~~~~~~~~~~~~~~~~~~p~~~~ 427 (595)
..|.. .........+||+.... . ..|.. ..+. + .+..
T Consensus 179 -----~~~~~---------------------~~~~~d~~liNG~G~~~~~~~~~~~~------~~~~-~-------~~~~ 218 (566)
T PLN02604 179 -----SIPFD---------------------WVGEPQSLLIQGKGRYNCSLVSSPYL------KAGV-C-------NATN 218 (566)
T ss_pred -----cCCCc---------------------cCCCCCceEEcCCCCCCCccccCccc------cccc-c-------ccCC
Confidence 00000 00000122344432110 0 00000 0000 0 0000
Q ss_pred CccceeEEecCCCcEEEEEEEcCCCc-cceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEE
Q 007633 428 PKVDTSLINGTYKGFMEIIFQNNDTT-VQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVY 506 (595)
Q Consensus 428 ~~~~~~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~ 506 (595)
.......++++.|+++.|.|.|.+.. ..-|++.||+|+|++.++.. ..|..-|.+.|.+|+..-+.++
T Consensus 219 ~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~-----------v~P~~v~~l~l~~GqRydvlV~ 287 (566)
T PLN02604 219 PECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHY-----------VEPFVVKNLFIYSGETYSVLVK 287 (566)
T ss_pred CCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEe-----------cccceeeeEEEccCCeEEEEEE
Confidence 00122367889999999999998764 58999999999999996532 2366789999999999999999
Q ss_pred ecC-cc-eeEEeecc
Q 007633 507 LDN-AG-IWNLRAEN 519 (595)
Q Consensus 507 adN-PG-~W~~HCHi 519 (595)
++. || .|-++...
T Consensus 288 ~~~~~~~~y~ira~~ 302 (566)
T PLN02604 288 ADQDPSRNYWVTTSV 302 (566)
T ss_pred CCCCCCCCEEEEEec
Confidence 975 45 56667554
No 39
>PRK02710 plastocyanin; Provisional
Probab=98.58 E-value=1.2e-06 Score=77.15 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=56.1
Q ss_pred CCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhc
Q 007633 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAA 140 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 140 (595)
-+.|++++||+| +++|....++++.+.|.. +...+...+.||++++|.|.. +|+|-|+|- .|...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------ELSHKDLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCc--------cccccccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 378999999985 567887778888765431 111122357899999988864 899999997 66778
Q ss_pred CceeeEEEe
Q 007633 141 GGYGGIIIN 149 (595)
Q Consensus 141 Gl~G~liV~ 149 (595)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.54 E-value=9e-08 Score=83.94 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=67.7
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecC-cc
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDN-AG 511 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adN-PG 511 (595)
+++.++.|+.|++.+.|.....+.+|+||...- ...|....+ ... .-.|.||+....+|.++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~-----~~~~~DG~~--~~~-------~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQP-----PSPWMDGVP--GVT-------QCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBST-----TGGGGSGGT--TTS-------GSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeee-----eeeecCCcc--ccc-------ceeEEeecceeeeEeeecccc
Confidence 467899999999999999888999999997641 100110000 000 014788999999999988 99
Q ss_pred eeEEeeccccceeccceEEEEEecC
Q 007633 512 IWNLRAENLDTWYLGQEVYVNVINP 536 (595)
Q Consensus 512 ~W~~HCHil~H~~~GM~~~~~V~~~ 536 (595)
.|.||||...+..+||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999988767999999988765
No 41
>PLN02191 L-ascorbate oxidase
Probab=98.52 E-value=4.2e-06 Score=93.29 Aligned_cols=249 Identities=14% Similarity=0.130 Sum_probs=137.8
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeE-EeecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLL-VETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+.. .|.|++++|+++++++.|--......+|.||....- -..||.+- +..-.|.|
T Consensus 43 ~v~~vNg~~p-------------GP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~P 105 (574)
T PLN02191 43 AVMTVNGQFP-------------GPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINP 105 (574)
T ss_pred eEEEECCcCC-------------CCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCC
Confidence 5789999875 499999999999999999765445666777765432 13588642 23356999
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCc-------cccccccccc
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDT-------YFSMNQARSI 345 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~~-------~~~~~~~~~~ 345 (595)
|+++...+++++ +| .||.+++...... ....|-|.......+. .+. .++. +|........
T Consensus 106 G~s~~Y~f~~~~-~G-T~wYHsH~~~q~~-----~Gl~G~liV~~~~~~~-~~~-----~~d~e~~l~l~Dw~~~~~~~~ 172 (574)
T PLN02191 106 GETFTYKFTVEK-PG-THFYHGHYGMQRS-----AGLYGSLIVDVAKGPK-ERL-----RYDGEFNLLLSDWWHESIPSQ 172 (574)
T ss_pred CCeEEEEEECCC-Ce-EEEEeeCcHHHHh-----CCCEEEEEEccCCCCC-CCC-----CCCeeEEEeeeccccCChHHH
Confidence 999999999974 78 9999998642111 1122333332211111 011 1111 1211000000
Q ss_pred ccccccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCC
Q 007633 346 RWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMS 425 (595)
Q Consensus 346 ~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~ 425 (595)
...+.. .+.. .........+||+.-..-........ ...+..+. ...+
T Consensus 173 ~~~~~~---~~~~-----------------------~~~~~d~~liNG~g~~~~~~~~~~~~--~~~~~~~~----~~~n 220 (574)
T PLN02191 173 ELGLSS---KPMR-----------------------WIGEAQSILINGRGQFNCSLAAQFSN--GTELPMCT----FKEG 220 (574)
T ss_pred HHhhcc---CCCC-----------------------cCCCCCceEECCCCCCCCcccccccC--Ccccccce----eccC
Confidence 000000 0000 00001123445432110000000000 00000000 0001
Q ss_pred CCCccceeEEecCCCcEEEEEEEcCCCc-cceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEE
Q 007633 426 RAPKVDTSLINGTYKGFMEIIFQNNDTT-VQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAIL 504 (595)
Q Consensus 426 ~~~~~~~~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~ir 504 (595)
+ .....+++++.|+++.+.|.|.+.. .+-|++.||+|.|++.+... ..|...|.+.|.+|+..-+.
T Consensus 221 ~--~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~-----------v~P~~v~~l~i~~GqRydVl 287 (574)
T PLN02191 221 D--QCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNY-----------ITPFTTDDIDIYSGESYSVL 287 (574)
T ss_pred C--CCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCee-----------ccceEeeeEEEcCCCeEEEE
Confidence 1 0012368899999999999998754 58999999999999996432 24667899999999999999
Q ss_pred EEecC-cc-eeEEee
Q 007633 505 VYLDN-AG-IWNLRA 517 (595)
Q Consensus 505 f~adN-PG-~W~~HC 517 (595)
++++. +| .|-++-
T Consensus 288 V~a~~~~~~~y~ira 302 (574)
T PLN02191 288 LTTDQDPSQNYYISV 302 (574)
T ss_pred EECCCCCCCCEEEEE
Confidence 99976 44 444443
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.36 E-value=1.3e-06 Score=75.08 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=47.0
Q ss_pred CeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcC
Q 007633 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (595)
Q Consensus 62 P~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (595)
.+|++++|+.|+|+++|.....+.+...++... ..|.||++.++.|.. +++|+|=|||..+. .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~---~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP---N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS----T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC---c-
Confidence 599999999999999999888877776665321 468999999999987 68999999999655 2
Q ss_pred ceeeEEE
Q 007633 142 GYGGIII 148 (595)
Q Consensus 142 l~G~liV 148 (595)
|.|.|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 7787775
No 43
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.29 E-value=3.4e-06 Score=71.75 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCC-CCCCCCC-CCCccCCCCeEEEEEEECCceeeeEEccCcchh
Q 007633 60 PGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNS-WQDGVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQ 137 (595)
Q Consensus 60 PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~-~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q 137 (595)
--..|++++||+| +++|.-..++++.++........ ...+... +...+.||+++++.|.. +|+|.|||. .|
T Consensus 15 ~P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H 87 (99)
T TIGR02656 15 EPAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PH 87 (99)
T ss_pred eCCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--Cc
Confidence 3468999999986 56687667777776543211000 0001111 22457899999998864 999999998 78
Q ss_pred hhcCceeeEEEe
Q 007633 138 RAAGGYGGIIIN 149 (595)
Q Consensus 138 ~~~Gl~G~liV~ 149 (595)
..+||.|.|+|+
T Consensus 88 ~~aGM~G~I~V~ 99 (99)
T TIGR02656 88 RGAGMVGKITVE 99 (99)
T ss_pred cccCCEEEEEEC
Confidence 888999999984
No 44
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.25 E-value=9.4e-05 Score=81.41 Aligned_cols=229 Identities=19% Similarity=0.239 Sum_probs=135.7
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCCc-eeEEeecCcceeeeeeeEEEEec
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHN-LLLVETEGSYTVQQNYTNMDIHV 272 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~-~~via~DG~~~~p~~~d~l~i~p 272 (595)
..++|||+-. .|.|.++.|+++.++++|-.. ..+.+|.||-. ..--..||.++ +.=.|.|
T Consensus 48 ~vi~iNG~fP-------------GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~P 108 (563)
T KOG1263|consen 48 QVITINGQFP-------------GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQP 108 (563)
T ss_pred eeEeecCCCC-------------CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCC
Confidence 4689999985 499999999999999999844 34445555532 22335599553 4457899
Q ss_pred cceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCC---cccccc-cccccccc
Q 007633 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYD---TYFSMN-QARSIRWN 348 (595)
Q Consensus 273 GqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~lp~~p~~~~---~~~~~~-~~~~~~~~ 348 (595)
||.|-..+++++..| +||-+++..+... ....|-|....... .+-|.+.....+. .+|-.+ ..+.++..
T Consensus 109 g~~~tY~F~v~~q~G-T~~yh~h~~~~Ra-----~G~~G~liI~~~~~-~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~ 181 (563)
T KOG1263|consen 109 GENFTYRFTVKDQIG-TLWYHSHVSWQRA-----TGVFGALIINPRPG-LPVPFPKPDKEFTILLGDWYKNLNHKNLKNF 181 (563)
T ss_pred CCeEEEEEEeCCcce-eEEEeeccccccc-----cCceeEEEEcCCcc-CCCCCCCCCceeEEEeEeeccccCHHHHHHh
Confidence 999999999997778 9999998764322 11333333321110 0011221100000 011110 00111100
Q ss_pred cccCCCCCCCCCCCCcCccceeEEEEEecccccccCCeEEEEecCeecCCCCCcHhhhhhcCCCCccccCCCCCCCCCCC
Q 007633 349 VSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAP 428 (595)
Q Consensus 349 l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~sf~~~~~P~~~~~~~~~~~~~~~~~~~~p~~~~~ 428 (595)
+......|.+ . ....+||.+ +..
T Consensus 182 ~~~~~~~p~~------------------------~---D~~~iNg~~------------------------------g~~ 204 (563)
T KOG1263|consen 182 LDRTGALPNP------------------------S---DGVLINGRS------------------------------GFL 204 (563)
T ss_pred hccCCCCCCC------------------------C---CceEECCCC------------------------------Ccc
Confidence 0000000000 0 012334332 122
Q ss_pred ccceeEEecCCCcEEEEEEEcCCC--ccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEE
Q 007633 429 KVDTSLINGTYKGFMEIIFQNNDT--TVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVY 506 (595)
Q Consensus 429 ~~~~~v~~~~~g~~ve~vi~N~~~--~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~ 506 (595)
+.|...+++..|+.+.|.|.|.+- ..+ |.+-||...||..+ |.+. .|.--|++.|.+|....+..+
T Consensus 205 ~~~~~~l~v~pGktY~lRiiN~g~~~~l~-F~I~~H~ltvVe~D-g~y~----------~p~~~~~l~i~~GQ~~~vLvt 272 (563)
T KOG1263|consen 205 YNCTPTLTVEPGKTYRLRIINAGLNTSLN-FSIANHQLTVVEVD-GAYT----------KPFTTDSLDIHPGQTYSVLLT 272 (563)
T ss_pred cCceeEEEEcCCCEEEEEEEccccccceE-EEECCeEEEEEEec-ceEE----------eeeeeceEEEcCCcEEEEEEe
Confidence 334677889999999999999863 334 99999999999985 3332 245579999999999999999
Q ss_pred ecC-cce-eEEee
Q 007633 507 LDN-AGI-WNLRA 517 (595)
Q Consensus 507 adN-PG~-W~~HC 517 (595)
+|. |+. |+-=|
T Consensus 273 adq~~~~Y~i~~~ 285 (563)
T KOG1263|consen 273 ADQSPGDYYIAAS 285 (563)
T ss_pred CCCCCCcEEEEEE
Confidence 986 453 44433
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.10 E-value=7.6e-06 Score=69.63 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=54.2
Q ss_pred CCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCC------C-CCCccCCCCeEEEEEEECCceeeeEEccC
Q 007633 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL------G-TNCPIPAGWNWTYQFQVKDQIGSFFYFPS 133 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~------~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H 133 (595)
-+.|.+++||+| ++.|....++++.+=-- .+..|.. . ....+.||+++++.|+ ++|+|.|+|.
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~ 85 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVAD-----GMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT 85 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETT-----SSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEecc-----cccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC
Confidence 479999999985 56676556666654221 1111110 0 1134789999999997 6999999999
Q ss_pred cchhhhcCceeeEEEe
Q 007633 134 LDFQRAAGGYGGIIIN 149 (595)
Q Consensus 134 ~~~q~~~Gl~G~liV~ 149 (595)
- |..+||.|.|+|+
T Consensus 86 -P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 86 -P-HYEAGMVGTIIVE 99 (99)
T ss_dssp -T-TGGTTSEEEEEEE
T ss_pred -C-CcccCCEEEEEEC
Confidence 4 8889999999995
No 46
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.01 E-value=2.5e-05 Score=85.61 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=68.2
Q ss_pred ecCCCeeE--EEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEE
Q 007633 43 ASPLGDKQ--QVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQ 120 (595)
Q Consensus 43 ~~~~G~~~--~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~ 120 (595)
+..+|... .+.+..-.|=-+.|+|++||+|.++++|.-...=.+ ||...... |+ +.-+.||++.+..|+
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI---~~dv~PG~t~svtF~ 604 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV---NMEVAPQATASVTFT 604 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc---cEEEcCCceEEEEEE
Confidence 45566544 455666677667899999999999999952211111 44433110 11 245789999999999
Q ss_pred ECCceeeeEEccCc---chhhhcCceeeEEEecc
Q 007633 121 VKDQIGSFFYFPSL---DFQRAAGGYGGIIINNR 151 (595)
Q Consensus 121 ~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~ 151 (595)
+ +++|+|||||.. ..|. +|.|.|+|+++
T Consensus 605 a-dkPGvy~~~CtefCGa~H~--~M~G~~iVep~ 635 (635)
T PRK02888 605 A-DKPGVYWYYCTWFCHALHM--EMRGRMLVEPK 635 (635)
T ss_pred c-CCCEEEEEECCcccccCcc--cceEEEEEEeC
Confidence 9 799999999985 2443 89999999874
No 47
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.91 E-value=4.8e-05 Score=70.71 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=76.1
Q ss_pred eeEEecCCCcEEEEEEEcCCCc-cceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecC-
Q 007633 432 TSLINGTYKGFMEIIFQNNDTT-VQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDN- 509 (595)
Q Consensus 432 ~~v~~~~~g~~ve~vi~N~~~~-~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adN- 509 (595)
..++.++.|+++.|.|.|.+.. .+.||++||+|+|++.++... .|...|++.|.+|+...+.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v-----------~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPV-----------EPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEE-----------EEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccc-----------cccccceEEeeCCeEEEEEEEeCCC
Confidence 3567899999999999998764 699999999999999964322 266789999999999999999987
Q ss_pred cceeEEee----ccccceeccceEEEEEe
Q 007633 510 AGIWNLRA----ENLDTWYLGQEVYVNVI 534 (595)
Q Consensus 510 PG~W~~HC----Hil~H~~~GM~~~~~V~ 534 (595)
+|.|.++| +...+...|+.+.+.+.
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999 55667788888876654
No 48
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.88 E-value=0.00023 Score=65.20 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=72.0
Q ss_pred EEEEEcCCCCC-CeEEeecCCEEEEEEEECCCCCceeeeCCccCCCC-------CCCCCCC----CCC------CccCCC
Q 007633 51 QVIGINGQFPG-PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKN-------SWQDGVL----GTN------CPIPAG 112 (595)
Q Consensus 51 ~~~~~Ng~~Pg-P~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~-------~~~DGv~----~tq------~~I~PG 112 (595)
+.+-|||+..| |+|.+..|-+|.|+|+|.-..+|++-. -+..+ ...||.. |.+ .-|.+|
T Consensus 73 ~~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 73 YPFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred ccccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCcccccccccc
Confidence 34677888776 799999999999999999777765543 12222 3457753 322 225577
Q ss_pred CeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccC
Q 007633 113 WNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRD 152 (595)
Q Consensus 113 ~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 152 (595)
++..=.|.. -++|+|||-|-...|..+||+|-+||.+.-
T Consensus 150 qs~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 150 HSRSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred ceeEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 775544554 589999999999999999999999998754
No 49
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.86 E-value=9.8e-05 Score=60.56 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=51.3
Q ss_pred CCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhc
Q 007633 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAA 140 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 140 (595)
-+.|++++||+|. +.|....+++++.+........+ ....+.||+++++.| +++|+|-|||-...
T Consensus 10 P~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~~~~~~~------~~~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTVT--WINREAMPHNVHFVAGVLGEAAL------KGPMMKKEQAYSLTF---TEAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEEE--EEECCCCCccEEecCCCCccccc------cccccCCCCEEEEEC---CCCEEEEEEcCCCC----
Confidence 4789999999974 67887778888765431100001 112357788888776 46999999997543
Q ss_pred CceeeEEEe
Q 007633 141 GGYGGIIIN 149 (595)
Q Consensus 141 Gl~G~liV~ 149 (595)
+|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 599999985
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.78 E-value=0.00032 Score=65.71 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=74.1
Q ss_pred EEEEEcCCCCC-CeEEeecCCEEEEEEEECCCCCcee--eeCCccC--CCCCCCCCCC----C------CCCccCCCCeE
Q 007633 51 QVIGINGQFPG-PILNVTTNWNVVVNVKNDLDEPLLL--TWNGVQH--RKNSWQDGVL----G------TNCPIPAGWNW 115 (595)
Q Consensus 51 ~~~~~Ng~~Pg-P~I~v~~Gd~v~v~v~N~l~~~~~i--H~HG~~~--~~~~~~DGv~----~------tq~~I~PG~~~ 115 (595)
..+-|||..-| ++|.+..|.+|.|+|+|.-..+|++ ---+..+ ......||.. | +...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 36778887654 7999999999999999986555442 2222221 1234566632 2 12358899999
Q ss_pred EEEEEECCceeeeEEccCcchhhhcCceeeEEEeccC
Q 007633 116 TYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRD 152 (595)
Q Consensus 116 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 152 (595)
.-.|.. -++|.|||=|-...|..+||++-|+|.+.-
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 877765 369999999999999999999999999754
No 51
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.55 E-value=0.00041 Score=63.32 Aligned_cols=88 Identities=16% Similarity=0.055 Sum_probs=56.8
Q ss_pred eEEecCCCcEEEEEEEcCCC-ccceeeecCceEE--EEEEeCCccCCCCCCCCCCCCCCcccEEEeCC---C--cEEEEE
Q 007633 433 SLINGTYKGFMEIIFQNNDT-TVQSYHMDGYAFF--VVGMDFGVWTENSRGTYNKWDGVARSTTQVFP---G--AWTAIL 504 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~-~~HP~HlHG~~F~--Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p---~--g~~~ir 504 (595)
+.+.++.|+.|.+++.|.+. ..|.|-||.+.-. ......|. +.....-.+++ + ++..+.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~t 118 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFT 118 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEE
Confidence 35678999999999999865 4566655532210 00000000 11111112222 2 246888
Q ss_pred EEecCcceeEEeeccccceeccceEEEEE
Q 007633 505 VYLDNAGIWNLRAENLDTWYLGQEVYVNV 533 (595)
Q Consensus 505 f~adNPG~W~~HCHil~H~~~GM~~~~~V 533 (595)
|+++.+|.+.||||+..|...||-..+.|
T Consensus 119 f~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 119 YHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 99999999999999999999999998876
No 52
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.48 E-value=0.00057 Score=59.55 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=50.3
Q ss_pred CCeEEeecCCEEEEEEEECCCCCceeee-CCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhh
Q 007633 61 GPILNVTTNWNVVVNVKNDLDEPLLLTW-NGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA 139 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l~~~~~iH~-HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 139 (595)
...|.|++||+|+....|. ++++.+ .+. ..+|... ..-.+|+++++.| +++|+|=|+|- .|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF---~~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTV---TEEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEe---CCCEEEEEEcC--CCcc
Confidence 4689999999977666654 455543 221 1122211 1113466665555 47999999998 6778
Q ss_pred cCceeeEEEeccC
Q 007633 140 AGGYGGIIINNRD 152 (595)
Q Consensus 140 ~Gl~G~liV~~~~ 152 (595)
.||.|.|+|.+++
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 8999999998853
No 53
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.34 E-value=0.00071 Score=60.01 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=51.2
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
..+.++.|+.|+|.+.|.++..|.+-++++.+ ...++||....++|.++-||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~adKpG~ 113 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSIDAYGI---------------------------SEVIKAGETKTISFKADKAGA 113 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEECCCCc---------------------------ceEECCCCeEEEEEECCCCEE
Confidence 35689999999999999988888777766532 136789999999999999999
Q ss_pred eEEeeccc
Q 007633 513 WNLRAENL 520 (595)
Q Consensus 513 W~~HCHil 520 (595)
|.|||-..
T Consensus 114 Y~y~C~~H 121 (135)
T TIGR03096 114 FTIWCQLH 121 (135)
T ss_pred EEEeCCCC
Confidence 99999983
No 54
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.32 E-value=0.00093 Score=56.74 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=58.0
Q ss_pred eeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcc
Q 007633 432 TSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAG 511 (595)
Q Consensus 432 ~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG 511 (595)
...+.++.|+.|.|+ |.+...|.+.++...+.. +... .......+++.+.||....+.|.. ||
T Consensus 16 P~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~-----~~~~--------~~~~~~~~~~~~~pG~t~~~tF~~--~G 78 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPA-----GVKE--------LAKSLSHKDLLNSPGESYEVTFST--PG 78 (99)
T ss_pred CCEEEECCCCEEEEE--ECCCCCceEEECCCCCcc-----chhh--------hcccccccccccCCCCEEEEEeCC--CE
Confidence 346788999999886 666677888776543211 1000 001123466788899988776664 99
Q ss_pred eeEEeeccccceeccceEEEEE
Q 007633 512 IWNLRAENLDTWYLGQEVYVNV 533 (595)
Q Consensus 512 ~W~~HCHil~H~~~GM~~~~~V 533 (595)
.|.|||- .|..+||...+.|
T Consensus 79 ~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 79 TYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred EEEEEcC--CccccCCEEEEEE
Confidence 9999998 5999999999887
No 55
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.26 E-value=0.0011 Score=58.26 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=52.5
Q ss_pred CeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcC
Q 007633 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (595)
Q Consensus 62 P~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (595)
-.|+|++||+ |++.|.-...++++.-+.- .+ +|.- ...-.+|+++++.|. ++|+|-|+|-. |+.+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG--TLKAGINESFTHTFE---TPGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc--ccccCCCcceEEEec---ccceEEEEecc--CCCCC
Confidence 3899999999 6788987778888765552 11 2221 123344466666664 59999999964 56679
Q ss_pred ceeeEEEec
Q 007633 142 GYGGIIINN 150 (595)
Q Consensus 142 l~G~liV~~ 150 (595)
|.|.|+|.+
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.18 E-value=0.0023 Score=55.62 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=50.5
Q ss_pred CCeEEeecCCEEEEEEEECC-CCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhh
Q 007633 61 GPILNVTTNWNVVVNVKNDL-DEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA 139 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 139 (595)
-+.|.|++||+|. ++|+. ..++++..-+ ...+.-+ .....||++|+|.|. ++|+|=|+|- .|..
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f~s~----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~--pH~~ 105 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDLDES----ERVSEEGTTYEHTFE---EPGIYLYVCV--PHEA 105 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCCCEEEEECC----CCCcccc----ccccCCCCEEEEEec---CCcEEEEEcc--CCCC
Confidence 4689999999965 77554 4666665311 0011101 123578999999993 6999999997 4566
Q ss_pred cCceeeEEEe
Q 007633 140 AGGYGGIIIN 149 (595)
Q Consensus 140 ~Gl~G~liV~ 149 (595)
.||.|.|+|+
T Consensus 106 ~gM~G~I~V~ 115 (115)
T TIGR03102 106 LGMKGAVVVE 115 (115)
T ss_pred CCCEEEEEEC
Confidence 7999999984
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.86 E-value=0.004 Score=53.31 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=44.7
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
..+.++.|+.+.+.+.|.+...|-|.+.+..+ ...+.||+...+.|.++.||.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~---------------------------~~~l~~g~~~~~~f~~~~~G~ 87 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGI---------------------------SKVLPPGETATVTFTPLKPGE 87 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE---------------------------EEEE-TT-EEEEEEEE-S-EE
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCce---------------------------EEEECCCCEEEEEEcCCCCEE
Confidence 46788999999999999988877777766222 247889999999999999999
Q ss_pred eEEeecccccee
Q 007633 513 WNLRAENLDTWY 524 (595)
Q Consensus 513 W~~HCHil~H~~ 524 (595)
|-|+|-+ |.+
T Consensus 88 y~~~C~~--~~~ 97 (104)
T PF13473_consen 88 YEFYCTM--HPN 97 (104)
T ss_dssp EEEB-SS--S-T
T ss_pred EEEEcCC--CCc
Confidence 9999997 554
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.27 E-value=0.017 Score=63.92 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=59.1
Q ss_pred eEEecCCCcEEEEEEEcCC---CccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecC
Q 007633 433 SLINGTYKGFMEIIFQNND---TTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDN 509 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~---~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adN 509 (595)
..+.++.|+.|.+++.|.+ +..|.|-+-++... ..+.||....+.|++|.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~---------------------------~dv~PG~t~svtF~adk 607 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN---------------------------MEVAPQATASVTFTADK 607 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccCcc---------------------------EEEcCCceEEEEEEcCC
Confidence 4577899999999999974 45688877544321 25678999999999999
Q ss_pred cceeEEeeccccce-eccceEEEEEec
Q 007633 510 AGIWNLRAENLDTW-YLGQEVYVNVIN 535 (595)
Q Consensus 510 PG~W~~HCHil~H~-~~GM~~~~~V~~ 535 (595)
||+|.+||...-|. |.+|...+.|.+
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999974333 568888888753
No 59
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=95.67 E-value=0.094 Score=44.38 Aligned_cols=82 Identities=11% Similarity=0.055 Sum_probs=54.0
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCC-CCCCCCCCCCcccEEEeCCCcEEEEEEEecCcc
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENS-RGTYNKWDGVARSTTQVFPGAWTAILVYLDNAG 511 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG 511 (595)
..+.++.|+.|.|+.. +...|.+++=- +.+.... ...... .-.+..+.+|....+.|. .||
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~~~----------~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~tF~--~~G 78 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVFVA----------DGMPAGADSDYVPP----GDSSPLLAPGETYSVTFT--KPG 78 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEEET----------TSSHTTGGHCHHST----TCEEEEBSTTEEEEEEEE--SSE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEEec----------ccccccccccccCc----cccceecCCCCEEEEEeC--CCe
Confidence 4678899999988766 45557665532 1111000 000111 115667778888777766 999
Q ss_pred eeEEeeccccceeccceEEEEEe
Q 007633 512 IWNLRAENLDTWYLGQEVYVNVI 534 (595)
Q Consensus 512 ~W~~HCHil~H~~~GM~~~~~V~ 534 (595)
.|.|+|- - |..+||-..+.|.
T Consensus 79 ~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 79 TYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999 4 9999999988873
No 60
>PRK02710 plastocyanin; Provisional
Probab=95.60 E-value=0.056 Score=47.49 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=49.8
Q ss_pred EEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCccee
Q 007633 434 LINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W 513 (595)
.++++.|+.|+|+ |.+...|.+.+.+..+ +. .+| ..+.||....+.|.. ||.+
T Consensus 48 ~i~v~~Gd~V~~~--N~~~~~H~v~~~~~~~---------~~-------------~~~-~~~~pg~t~~~tF~~--~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNKLAPHNAVFDGAKE---------LS-------------HKD-LAFAPGESWEETFSE--AGTY 100 (119)
T ss_pred EEEEcCCCEEEEE--ECCCCCceEEecCCcc---------cc-------------ccc-cccCCCCEEEEEecC--CEEE
Confidence 4678899998875 6667778876543211 00 011 245677776666654 9999
Q ss_pred EEeeccccceeccceEEEEE
Q 007633 514 NLRAENLDTWYLGQEVYVNV 533 (595)
Q Consensus 514 ~~HCHil~H~~~GM~~~~~V 533 (595)
.|+|- .|..+||-..+.|
T Consensus 101 ~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 101 TYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred EEEcC--CCccCCcEEEEEE
Confidence 99998 4888999998887
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.76 E-value=0.13 Score=44.83 Aligned_cols=77 Identities=8% Similarity=0.137 Sum_probs=49.1
Q ss_pred eeEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcc
Q 007633 432 TSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAG 511 (595)
Q Consensus 432 ~~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG 511 (595)
...+.++.|++|.|+..+.+ |... .+.... +... +.+.-.++.. +.++++.||
T Consensus 14 P~~v~V~~GdTV~f~n~d~~---Hnv~---------~~~~~~--p~g~-----------~~~~s~~g~~--~~~tF~~~G 66 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKG---HNVE---------TIKGMI--PEGA-----------EAFKSKINEE--YTVTVTEEG 66 (116)
T ss_pred CCEEEECCCCEEEEEECCCC---eeEE---------EccCCC--cCCc-----------ccccCCCCCE--EEEEeCCCE
Confidence 34678999999999988752 4321 111000 0000 0011123444 455567899
Q ss_pred eeEEeeccccceeccceEEEEEecCC
Q 007633 512 IWNLRAENLDTWYLGQEVYVNVINPE 537 (595)
Q Consensus 512 ~W~~HCHil~H~~~GM~~~~~V~~~~ 537 (595)
.+-|+|-. |..+||-..+.|.++.
T Consensus 67 ~Y~Y~C~p--H~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 67 VYGVKCTP--HYGMGMVALIQVGDPP 90 (116)
T ss_pred EEEEEcCC--CccCCCEEEEEECCCC
Confidence 99999996 9999999999998764
No 62
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.03 E-value=0.32 Score=42.73 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=51.6
Q ss_pred CCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcc-hhhh
Q 007633 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD-FQRA 139 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 139 (595)
.+.|.+..|+.|++++++. +.-+++...++.. +.-+-||+.....|++ +++|+|++.|..= ..-.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc------------ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 4789999999999999995 5555555444422 2446799999999999 6899999999831 1112
Q ss_pred cCceeeEEE
Q 007633 140 AGGYGGIII 148 (595)
Q Consensus 140 ~Gl~G~liV 148 (595)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 246777665
No 63
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=94.03 E-value=0.79 Score=43.35 Aligned_cols=105 Identities=22% Similarity=0.175 Sum_probs=68.7
Q ss_pred CeEEEcCCCCCCCCCCCCCCCCCceeEEEecCcEEEEEEEEeCCCceeeEEEeCC-----ceeEEeecCccee-----ee
Q 007633 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNH-----NLLLVETEGSYTV-----QQ 263 (595)
Q Consensus 194 d~~liNG~~~~~~~~~~~~~~~~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh-----~~~via~DG~~~~-----p~ 263 (595)
+.+-+||... ....+-|.+|-++.++++|.+.. .|+|-+--. ....++.||..+. +.
T Consensus 74 ~~~nfnGts~------------G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~ 140 (196)
T PF06525_consen 74 NPFNFNGTSN------------GQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPG 140 (196)
T ss_pred CceeeecccC------------CcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCC
Confidence 4677888775 34889999999999999998764 666666321 2235677776552 12
Q ss_pred eeeEEEEeccceEEEEEEeCCCCCcceEEEEeecccCCCCCCCcceEEEEEecCC
Q 007633 264 NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318 (595)
Q Consensus 264 ~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~~~~~~~~~~~~~~~~ail~y~~~ 318 (595)
....--|.+||+++..+... ++| .||+.+.-..... ....+.|....+
T Consensus 141 ~~~~~GI~~G~s~~~~~~~l-~aG-~YwlvC~ipGHA~-----sGMw~~LiVs~~ 188 (196)
T PF06525_consen 141 NYTSNGISSGQSASGVYNDL-PAG-YYWLVCGIPGHAE-----SGMWGVLIVSSN 188 (196)
T ss_pred ccccCCccCCceeeEEEccC-CCc-eEEEEccCCChhh-----cCCEEEEEEecC
Confidence 22334567999998777533 578 9999886544332 234455555443
No 64
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=93.84 E-value=0.28 Score=39.98 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=45.2
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
..+.+..|+.|.| .|.+...|..+.+...+ +..+ ++. -.+.++... ++.++.||.
T Consensus 11 ~~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~~~-~~~~~g~~~--~~tf~~~G~ 65 (83)
T TIGR02657 11 PELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------LKG-PMMKKEQAY--SLTFTEAGT 65 (83)
T ss_pred CEEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------ccc-cccCCCCEE--EEECCCCEE
Confidence 3567889999987 57767778888653221 0000 011 123344444 456688999
Q ss_pred eEEeeccccceeccceEEEEE
Q 007633 513 WNLRAENLDTWYLGQEVYVNV 533 (595)
Q Consensus 513 W~~HCHil~H~~~GM~~~~~V 533 (595)
|.|||=+ |- .|...+.|
T Consensus 66 y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 66 YDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEEcCC--CC--CCeEEEEE
Confidence 9999998 43 47777766
No 65
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.56 E-value=0.71 Score=40.55 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=55.8
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.|.+.+.+. +..|.|.+-+.... +.+.||....+.|.++.||.
T Consensus 46 ~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~k---------------------------~d~~PG~~~~~~~~~~~~G~ 97 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE-DVIHSFWIPELGIK---------------------------MDAIPGRTNSVTFTPDKPGT 97 (120)
T ss_dssp SEEEEETTSEEEEEEEES-SS-EEEEETTCTEE---------------------------EEEBTTCEEEEEEEESSSEE
T ss_pred ceecccccceEeEEEEcC-CccccccccccCcc---------------------------cccccccceeeeeeeccCCc
Confidence 457889999999999996 56788888655442 25678999999999999999
Q ss_pred eEEeeccccc-eeccceEEEEEe
Q 007633 513 WNLRAENLDT-WYLGQEVYVNVI 534 (595)
Q Consensus 513 W~~HCHil~H-~~~GM~~~~~V~ 534 (595)
+-..|...=. -|.-|...++|+
T Consensus 98 y~~~C~e~CG~gH~~M~~~v~VV 120 (120)
T PF00116_consen 98 YYGQCAEYCGAGHSFMPGKVIVV 120 (120)
T ss_dssp EEEEE-SSSSTTGGG-EEEEEEE
T ss_pred EEEcCccccCcCcCCCeEEEEEC
Confidence 9999997543 356666677764
No 66
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.43 E-value=0.28 Score=44.36 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=66.3
Q ss_pred EecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcceeE
Q 007633 435 INGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIWN 514 (595)
Q Consensus 435 ~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W~ 514 (595)
+.++.|+++..++.|.....|=|=+- ++.... +.|.-... ..-..--...++.|.||....+.+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~--~~~~~~~~--~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNL--EHVTHMIL--ADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccc--hhHHHhhh--CCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 46788999999999998887876665 211111 11110000 000001235689999999999999999999999
Q ss_pred EeeccccceeccceEEEEEe
Q 007633 515 LRAENLDTWYLGQEVYVNVI 534 (595)
Q Consensus 515 ~HCHil~H~~~GM~~~~~V~ 534 (595)
|-|-|-.|-+.||-..++|-
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999988874
No 67
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.35 E-value=0.38 Score=42.05 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=55.6
Q ss_pred CCeEEeecC-CEEEEEEEECCCCCceeeeC----------------Cc----cCCCCCCCC-CCCCCCCccCCCCeEEEE
Q 007633 61 GPILNVTTN-WNVVVNVKNDLDEPLLLTWN----------------GV----QHRKNSWQD-GVLGTNCPIPAGWNWTYQ 118 (595)
Q Consensus 61 gP~I~v~~G-d~v~v~v~N~l~~~~~iH~H----------------G~----~~~~~~~~D-Gv~~tq~~I~PG~~~~Y~ 118 (595)
=..|.|..+ ..|.|+|+|....+...--| |+ ....-+..| -|.....-|.|||+.+..
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 358899984 78999999985433222222 11 110011111 111122448999999999
Q ss_pred EEECC-ceee-eEEccCcchhhhcCceeeEEE
Q 007633 119 FQVKD-QIGS-FFYFPSLDFQRAAGGYGGIII 148 (595)
Q Consensus 119 f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~liV 148 (595)
|+++. ++|+ |-|.|....|.+ .|.|.|.+
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~l 125 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWA-MMRGTVKL 125 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHH-hceEEEeC
Confidence 99963 5886 999999988886 69998753
No 68
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=92.80 E-value=1.2 Score=46.82 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=54.8
Q ss_pred CCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCC--CCCCccCCCCeEEEEEEECCceeeeEEccCcc
Q 007633 58 QFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL--GTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD 135 (595)
Q Consensus 58 ~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~--~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 135 (595)
.+--..+.|+.|+ +.+.|+|....++.+-.- +|+. +....|.||.+.++.++. .+|+|-|+|-
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~-- 104 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCG-- 104 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecC--
Confidence 4444689999996 899999997766443111 2221 122479999999988777 4999999993
Q ss_pred hhhhcCceeeEEEeccC
Q 007633 136 FQRAAGGYGGIIINNRD 152 (595)
Q Consensus 136 ~q~~~Gl~G~liV~~~~ 152 (595)
.+ ..+.|.|+|....
T Consensus 105 ~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 105 LL--TNPKGKLIVKGEA 119 (375)
T ss_pred cC--CCCCceEEEeCCC
Confidence 33 3458999998643
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.33 E-value=1.2 Score=38.83 Aligned_cols=73 Identities=14% Similarity=-0.032 Sum_probs=46.8
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
..++++.|+.|.|+-+. +...|.... .+.+.|+.. .....+|....+.| +.||.
T Consensus 42 ~~ltV~~GdTVtw~~~~-d~~~HnV~s---------~~~~~f~s~--------------~~~~~~G~t~s~Tf--~~~G~ 95 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTG-EGGGHNVVS---------DGDGDLDES--------------ERVSEEGTTYEHTF--EEPGI 95 (115)
T ss_pred CEEEECCCCEEEEEECC-CCCCEEEEE---------CCCCCcccc--------------ccccCCCCEEEEEe--cCCcE
Confidence 35688999999986543 234565432 222233211 01224455555544 78999
Q ss_pred eEEeeccccceeccceEEEEE
Q 007633 513 WNLRAENLDTWYLGQEVYVNV 533 (595)
Q Consensus 513 W~~HCHil~H~~~GM~~~~~V 533 (595)
+.|+|-. |..+||-..+.|
T Consensus 96 Y~Y~C~p--H~~~gM~G~I~V 114 (115)
T TIGR03102 96 YLYVCVP--HEALGMKGAVVV 114 (115)
T ss_pred EEEEccC--CCCCCCEEEEEE
Confidence 9999997 999999998887
No 70
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.11 E-value=0.46 Score=42.99 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=66.7
Q ss_pred CCCCCeEEeecCCEEEEEEEECCCCC--cee---------eeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCcee
Q 007633 58 QFPGPILNVTTNWNVVVNVKNDLDEP--LLL---------TWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIG 126 (595)
Q Consensus 58 ~~PgP~I~v~~Gd~v~v~v~N~l~~~--~~i---------H~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~G 126 (595)
.|++-.+.++.|.+++..++|.-.-- .++ --|... .+.+++-......+.||++-+..|.. .++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~---~~Dme~d~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMIL---ADDMEHDDPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhh---CCccccCCcceeEeCCCCcEEEEEEe-cCCc
Confidence 46788999999999999999975311 111 112222 23444433334669999999999999 4899
Q ss_pred eeEEccCcchhhhcCceeeEEEec
Q 007633 127 SFFYFPSLDFQRAAGGYGGIIINN 150 (595)
Q Consensus 127 t~wYH~H~~~q~~~Gl~G~liV~~ 150 (595)
.|=.-|-...|+.+||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999999864
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=91.19 E-value=1.9 Score=41.53 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=55.5
Q ss_pred CCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCc-chhhh
Q 007633 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL-DFQRA 139 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~ 139 (595)
...|.+..|+.|++++++. +. + ||..... . | -+.-+-||..-+..|++ +++|+|...|.. -....
T Consensus 116 ~~~l~vp~g~~v~~~~ts~-DV---~--Hsf~ip~---~-~---~k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK-DV---I--HSFWVPE---L-G---GKIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC-ch---h--hcccccc---c-C---ceEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 3589999999999999985 22 2 4543321 1 1 13456789999999998 689999999984 12222
Q ss_pred cCceeeEEEeccC
Q 007633 140 AGGYGGIIINNRD 152 (595)
Q Consensus 140 ~Gl~G~liV~~~~ 152 (595)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 5699999998754
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=89.77 E-value=1.2 Score=42.86 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=57.4
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.|++.+.+.+ ..|.|.+-+... -...-||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V~Hsf~ip~~~~---------------------------k~da~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-VIHSFWVPELGG---------------------------KIDAIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-hhhcccccccCc---------------------------eEEecCCcEEEEEEEeCCCEE
Confidence 4567899999999999864 346665522211 134568899999999999999
Q ss_pred eEEeeccccc-eeccceEEEEEecCC
Q 007633 513 WNLRAENLDT-WYLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H-~~~GM~~~~~V~~~~ 537 (595)
+...|-..-. .|..|...++|++++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHH
Confidence 9999997432 368888889988765
No 73
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=87.25 E-value=4.8 Score=41.57 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=49.9
Q ss_pred EEEEEEEEEEecCCC-----eeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCce--------eeeCC---ccCCCC
Q 007633 33 FYDWTISYVTASPLG-----DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLL--------LTWNG---VQHRKN 96 (595)
Q Consensus 33 ~~~l~~~~~~~~~~G-----~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~--------iH~HG---~~~~~~ 96 (595)
..-|.+....+.|.- +..++.--|=.+||-.+++ .+.++|+.+++.. ++|=. +..-.+
T Consensus 248 tIPLQag~~~i~pLp~~~~~V~~kv~~a~Y~VPGR~l~~------~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~ 321 (399)
T TIGR03079 248 TVPIQAGLSKVASLPVAPNPVSINVTKANYDVPGRALRV------TMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDP 321 (399)
T ss_pred eeeccccceecccCCCCCCceEEEEeccEEecCCcEEEE------EEEEEcCCCCceEEEeEeecceEeeCcccccccCC
Confidence 334444444454432 2333444445688888864 5788888876542 33322 222222
Q ss_pred CCCC-----CCCC-CCCccCCCCeEEEEEEECC
Q 007633 97 SWQD-----GVLG-TNCPIPAGWNWTYQFQVKD 123 (595)
Q Consensus 97 ~~~D-----Gv~~-tq~~I~PG~~~~Y~f~~~~ 123 (595)
.+.| |... .+.||.|||+.+.+..+.|
T Consensus 322 ~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 322 DYPRELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred CChHHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 3333 6666 5689999999999998854
No 74
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.98 E-value=3.2 Score=41.26 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=58.1
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.|++.+... +..|.|.+-+-.+ -+...||-...+.+.++.||+
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~---------------------------k~d~iPG~~~~~~~~~~~~G~ 188 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG---------------------------KIDAIPGMTTELWLTANKPGT 188 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCc---------------------------eeeecCCceEEEEEecCCCeE
Confidence 456788999999999887 4457665543333 235567888899999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPEI 538 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~~ 538 (595)
+..+|+..--. |..|-..+.|+++++
T Consensus 189 Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 189 YRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 99999986654 556666788887764
No 75
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=84.15 E-value=6.4 Score=34.55 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=54.2
Q ss_pred CceeEEEecC-cEEEEEEEEeCCCc----eeeEEEe-CCceeEEe-------ecCcceee----eeeeEEEEeccceEEE
Q 007633 216 PYQLINVEPG-KTYRLRVHNVGIST----SLNFRIQ-NHNLLLVE-------TEGSYTVQ----QNYTNMDIHVGQSFSF 278 (595)
Q Consensus 216 ~~~~l~v~~G-~~~rlRliNag~~~----~~~~~i~-gh~~~via-------~DG~~~~p----~~~d~l~i~pGqR~dv 278 (595)
+...|+|.++ +.+.+.|-|.|... .|++-|- .-.+.-|+ .|-.|+++ +...+=.|++||+.+|
T Consensus 14 d~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 14 NTKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred cccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Confidence 4578999985 88999999998643 3444331 11222222 34566643 2456788999999999
Q ss_pred EEEeCC-CCCcceEEEEee
Q 007633 279 LVTTDQ-NASSDYYIVASP 296 (595)
Q Consensus 279 lv~~~~-~~g~~y~i~a~~ 296 (595)
.++++. .+|.+|...++-
T Consensus 94 tF~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EEECCCCCCCCcceEEEcC
Confidence 999864 355479887754
No 76
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=83.44 E-value=6.2 Score=39.26 Aligned_cols=78 Identities=8% Similarity=-0.089 Sum_probs=59.8
Q ss_pred CeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCc-chhhhc
Q 007633 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL-DFQRAA 140 (595)
Q Consensus 62 P~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~~ 140 (595)
..|.+..|..|+++++-. |.-+++...++.. +.-.-||...+..+++ +++|+|.-+|+. ......
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~------------k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH~ 202 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG------------KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGHS 202 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCc------------eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCcc
Confidence 899999999999999877 5555554444421 3446789999999998 789999999993 345556
Q ss_pred CceeeEEEeccCC
Q 007633 141 GGYGGIIINNRDV 153 (595)
Q Consensus 141 Gl~G~liV~~~~~ 153 (595)
.|.|.++|.++++
T Consensus 203 ~M~~~v~vvs~~~ 215 (247)
T COG1622 203 FMRFKVIVVSQED 215 (247)
T ss_pred cceEEEEEEcHHH
Confidence 7999999998753
No 77
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=81.33 E-value=2.1 Score=45.33 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=50.5
Q ss_pred eEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcc-hhhhcC
Q 007633 63 ILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD-FQRAAG 141 (595)
Q Consensus 63 ~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~~G 141 (595)
+..|++||.|.+.++|--.....+| |.-.. +-|+ ...+.|-++-.|.|.+ +.+|.+||.|.-. .-..+-
T Consensus 559 ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p----~~~v---~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~e 628 (637)
T COG4263 559 EFKVKQGDEVTVLTTNLDEVEDLTH--GFVIP----NYGV---NMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHME 628 (637)
T ss_pred EEEEecCcEEEEEecccceeccccc--eeeec----cCce---EEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHHh
Confidence 6778888888888888654444443 32111 1122 2457888999999999 6899999998643 222234
Q ss_pred ceeeEEEe
Q 007633 142 GYGGIIIN 149 (595)
Q Consensus 142 l~G~liV~ 149 (595)
|.|-++|+
T Consensus 629 m~~rmlve 636 (637)
T COG4263 629 MAGRMLVE 636 (637)
T ss_pred hccceeec
Confidence 67777776
No 78
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=81.09 E-value=9.5 Score=33.82 Aligned_cols=74 Identities=8% Similarity=-0.094 Sum_probs=44.9
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
..++++.|+.|.|+- .+...|..+.=+-. .+ ..-+++..-++.... ..++-||.
T Consensus 54 A~v~v~pGDTVtw~~--~d~~~Hnv~~~~~~---------~~-------------~g~~~~~~~~~~s~~--~Tfe~~G~ 107 (128)
T COG3794 54 AEVTVKPGDTVTWVN--TDSVGHNVTAVGGM---------DP-------------EGSGTLKAGINESFT--HTFETPGE 107 (128)
T ss_pred cEEEECCCCEEEEEE--CCCCCceEEEeCCC---------Cc-------------ccccccccCCCcceE--EEecccce
Confidence 356788999999864 44446665442221 11 011111222233343 44445999
Q ss_pred eEEeeccccceeccceEEEEEe
Q 007633 513 WNLRAENLDTWYLGQEVYVNVI 534 (595)
Q Consensus 513 W~~HCHil~H~~~GM~~~~~V~ 534 (595)
+.|.|-. |.-+||-..+.|.
T Consensus 108 Y~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 108 YTYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred EEEEecc--CCCCCcEEEEEeC
Confidence 9999999 8999999988775
No 79
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=80.36 E-value=15 Score=29.89 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=35.4
Q ss_pred EEEEEEEeCCCceeeEEEe-CCce--eEEeecCcceee--------eeeeEEEEeccceEEEEEEeCCC---CCcceEEE
Q 007633 228 YRLRVHNVGISTSLNFRIQ-NHNL--LLVETEGSYTVQ--------QNYTNMDIHVGQSFSFLVTTDQN---ASSDYYIV 293 (595)
Q Consensus 228 ~rlRliNag~~~~~~~~i~-gh~~--~via~DG~~~~p--------~~~d~l~i~pGqR~dvlv~~~~~---~g~~y~i~ 293 (595)
..|++.|.+.. .+.|.+. |+.+ .|...+|..+-. +......|.|||...+-.+.+.. +| .|.+.
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G-~Y~~~ 81 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPG-EYTLE 81 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SE-EEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCc-eEEEe
Confidence 46777777764 5555653 4433 344446655521 33568899999999999988865 45 88886
Q ss_pred E
Q 007633 294 A 294 (595)
Q Consensus 294 a 294 (595)
|
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 80
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=76.62 E-value=16 Score=35.03 Aligned_cols=76 Identities=11% Similarity=0.191 Sum_probs=56.8
Q ss_pred EEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCccee
Q 007633 434 LINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W 513 (595)
.+.++.|+.+++.+... +-.|.|.+-....+ +..-||-...+.+.++.||.+
T Consensus 117 ~l~lp~g~~v~~~ltS~-DViHsf~vp~l~~k---------------------------~d~~PG~~~~~~~~~~~~G~y 168 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-DVIHSFSVPDLNLK---------------------------MDAIPGRINHLFFCPDRHGVF 168 (194)
T ss_pred eEEEeCCCEEEeeeecC-ccccceeccccCce---------------------------eecCCCceEEEEEEcCCCEEE
Confidence 35678899999988876 45577766433221 244588889999999999999
Q ss_pred EEeeccccce-eccceEEEEEecCC
Q 007633 514 NLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 514 ~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
-..|...=-. |..|-..++|++++
T Consensus 169 ~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 169 VGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEeehhhCcCcccCcEEEEEEcCC
Confidence 9999975544 67788888888775
No 81
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=74.36 E-value=11 Score=37.15 Aligned_cols=78 Identities=9% Similarity=0.115 Sum_probs=57.8
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.|.+.+.+. +-.|.|.+-.... -...-||....+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~ts~-DViHsf~ip~~~~---------------------------k~d~~Pg~~~~~~~~~~~~g~ 191 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSA-DVIHSWTVPSLGV---------------------------KVDAIPGRLNQLSFEPKRPGV 191 (228)
T ss_pred CeEEEeeCcEEEEEEEcC-ccccceeccccCc---------------------------eeECCCCcceeEEEEeCCCEE
Confidence 456788999999999986 4456665532221 134568888999999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPEI 538 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~~ 538 (595)
+...|..+=.. |..|-..++|+++++
T Consensus 192 y~~~C~e~CG~~H~~M~~~v~v~~~~~ 218 (228)
T MTH00140 192 FYGQCSEICGANHSFMPIVVEAVPLED 218 (228)
T ss_pred EEEECccccCcCcCCCeEEEEEECHHH
Confidence 99999976544 677777888887653
No 82
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=70.65 E-value=23 Score=32.67 Aligned_cols=76 Identities=12% Similarity=0.260 Sum_probs=53.1
Q ss_pred EEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCccee
Q 007633 434 LINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W 513 (595)
.+.++.|..+.+.+...+ -.|.|.+-.... -+...||-...+.+.++.||.+
T Consensus 74 ~LvLP~g~~Vr~~lTS~D-VIHSF~VP~lgv---------------------------K~DavPGr~n~l~~~~~~~G~y 125 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD-VIHSWSVPSLGI---------------------------KADAIPGRLHKINTFILREGVF 125 (162)
T ss_pred CEEEeCCCEEEEEEEeCc-cceeeeccccCc---------------------------eeeccCCceEEEEEecCCCeEE
Confidence 356788999999888774 347765533221 1234577778889999999999
Q ss_pred EEeeccccc-eeccceEEEEEecCC
Q 007633 514 NLRAENLDT-WYLGQEVYVNVINPE 537 (595)
Q Consensus 514 ~~HCHil~H-~~~GM~~~~~V~~~~ 537 (595)
...|.-+=- -|..|-..++|+.++
T Consensus 126 ~gqCsElCG~gHs~M~~~V~vvs~~ 150 (162)
T PTZ00047 126 YGQCSEMCGTLHGFMPIVVEAVSPE 150 (162)
T ss_pred EEEcchhcCcCccCceEEEEEeCHH
Confidence 999996443 345677777777654
No 83
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=68.94 E-value=25 Score=27.95 Aligned_cols=66 Identities=23% Similarity=0.391 Sum_probs=31.5
Q ss_pred EecCcEE--EEEEEEeCCCc--eeeEEEeCCceeEEeecCcc--eeeeeeeEEEEeccceEEEEEEeC--C--CCCcceE
Q 007633 222 VEPGKTY--RLRVHNVGIST--SLNFRIQNHNLLLVETEGSY--TVQQNYTNMDIHVGQSFSFLVTTD--Q--NASSDYY 291 (595)
Q Consensus 222 v~~G~~~--rlRliNag~~~--~~~~~i~gh~~~via~DG~~--~~p~~~d~l~i~pGqR~dvlv~~~--~--~~g~~y~ 291 (595)
|++|+.. ++.+-|.|... ...+++.. -+|=. ..|.... .|.|||...+-++.. . .+| +|.
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G-~y~ 70 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPG-TYT 70 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SE-EEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCc-eEE
Confidence 4567664 78888988653 23344432 23322 1233333 789998776666553 2 346 898
Q ss_pred EEEeec
Q 007633 292 IVASPR 297 (595)
Q Consensus 292 i~a~~~ 297 (595)
|.+...
T Consensus 71 v~~~a~ 76 (78)
T PF10633_consen 71 VTVTAR 76 (78)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877543
No 84
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=68.09 E-value=17 Score=35.68 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=55.1
Q ss_pred EEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCccee
Q 007633 434 LINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W 513 (595)
-+.++.|+.|++.+...+ -.|+|.+ -+.+ ..+| .-||-...+.|++|.||.|
T Consensus 140 el~lP~g~pV~~~ltS~D-ViHSF~V-------P~l~-----------------~K~D---aiPG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNS-VMNSFFI-------PQLG-----------------SQIY---AMAGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECc-hhhhhhh-------hhcC-----------------Ceee---cCCCceEEEEEEeCCCEEE
Confidence 456789999999999874 3466543 2221 1234 3478888999999999999
Q ss_pred EEeeccccce-eccceEEEEEecCCC
Q 007633 514 NLRAENLDTW-YLGQEVYVNVINPEI 538 (595)
Q Consensus 514 ~~HCHil~H~-~~GM~~~~~V~~~~~ 538 (595)
.-.|--.=-. |..|...++|+++++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~~ 217 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRAA 217 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHHH
Confidence 9999864433 677888888887653
No 85
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=65.97 E-value=51 Score=30.93 Aligned_cols=96 Identities=11% Similarity=-0.117 Sum_probs=55.2
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCcc-CCC---CCCCCCC--CCCCcccEEEeCCCcEEEEEEE
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVW-TEN---SRGTYNK--WDGVARSTTQVFPGAWTAILVY 506 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~-~~~---~~~~~n~--~~p~~rDTv~v~p~g~~~irf~ 506 (595)
..+-++.|-.|.++|.|.+...|.. -++..+.-.- .+. +.+..+. ..+.--..=-+.+|......+.
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHnl-------~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~ 157 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHNL-------KLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN 157 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCccE-------EEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEec
Confidence 3456788999999999998766654 4443322110 000 0000100 0000000001223445555666
Q ss_pred ecCcceeEEeeccccceeccceEEEEEec
Q 007633 507 LDNAGIWNLRAENLDTWYLGQEVYVNVIN 535 (595)
Q Consensus 507 adNPG~W~~HCHil~H~~~GM~~~~~V~~ 535 (595)
.--||.+.+=|-+.-|...||=..+.|-+
T Consensus 158 ~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 158 DTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred cCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 56799999999999999999988766643
No 86
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=65.10 E-value=33 Score=27.82 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=20.5
Q ss_pred CCCCCCCCCC----CccCCCCeEEEEEEECCc---eeeeE
Q 007633 97 SWQDGVLGTN----CPIPAGWNWTYQFQVKDQ---IGSFF 129 (595)
Q Consensus 97 ~~~DGv~~tq----~~I~PG~~~~Y~f~~~~~---~Gt~w 129 (595)
-|+||-..+| ..|+||++.+|++..+.. +|+|.
T Consensus 40 rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~ 79 (82)
T PF12690_consen 40 RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYT 79 (82)
T ss_dssp ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEE
T ss_pred EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEE
Confidence 4788877555 459999999999999733 68885
No 87
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=65.07 E-value=75 Score=25.90 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=42.0
Q ss_pred EEecCcEE--EEEEEEeCCCceeeEEEeCCceeEEeecCcceeeeeeeEE-EEeccceEEEEEEeCC-CCCcceEEEEee
Q 007633 221 NVEPGKTY--RLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNM-DIHVGQSFSFLVTTDQ-NASSDYYIVASP 296 (595)
Q Consensus 221 ~v~~G~~~--rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~l-~i~pGqR~dvlv~~~~-~~g~~y~i~a~~ 296 (595)
.+.+|+.+ .+.|-|.|....-.+.+. +-.||..+ ....+ .|.+|+...+-+.... .+| .|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G-~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPG-SYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-C-EEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCC-eEEEEEEE
Confidence 45677775 688999998754444443 34465554 33344 7799999988887754 456 88888765
Q ss_pred cc
Q 007633 297 RF 298 (595)
Q Consensus 297 ~~ 298 (595)
..
T Consensus 84 D~ 85 (101)
T PF07705_consen 84 DP 85 (101)
T ss_dssp ST
T ss_pred ee
Confidence 43
No 88
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.96 E-value=30 Score=34.10 Aligned_cols=77 Identities=9% Similarity=0.106 Sum_probs=56.2
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+...+-. |+|+|-+.+. .. ..-||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~~-----------------k~---da~PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDVL--------HSWAVPALGV-----------------KM---DAVPGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCccc--------cceeccccCC-----------------cc---ccCCCceEEEEEEeCCceE
Confidence 456788999999999987543 4556544321 13 3457888889999999999
Q ss_pred eEEeeccccc-eeccceEEEEEecCC
Q 007633 513 WNLRAENLDT-WYLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H-~~~GM~~~~~V~~~~ 537 (595)
+...|.-+=. .|..|-..++|++++
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~~ 217 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECHH
Confidence 9999996443 367788888888665
No 89
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.57 E-value=1.7e+02 Score=28.78 Aligned_cols=78 Identities=13% Similarity=-0.088 Sum_probs=51.5
Q ss_pred CCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcc-hhhh
Q 007633 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD-FQRA 139 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 139 (595)
...+.+..|..|++.+++. +.- |+...+. -| -+.-.-||..-...|++ +++|+|+=.|..= ..-.
T Consensus 139 ~n~l~lP~~~~v~~~~ts~-DVi-----Hsf~ip~----~~---~k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA-DVI-----HSWTVPS----LG---VKVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC-ccc-----cceeccc----cC---ceeECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 4689999999999999995 222 3332211 11 12334678888888888 6899999988831 2223
Q ss_pred cCceeeEEEeccC
Q 007633 140 AGGYGGIIINNRD 152 (595)
Q Consensus 140 ~Gl~G~liV~~~~ 152 (595)
+.|.+.++|.+++
T Consensus 205 ~~M~~~v~v~~~~ 217 (228)
T MTH00140 205 SFMPIVVEAVPLE 217 (228)
T ss_pred CCCeEEEEEECHH
Confidence 3577778777643
No 90
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=59.28 E-value=30 Score=33.77 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=55.1
Q ss_pred EEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCccee
Q 007633 434 LINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W 513 (595)
.+.++.|+.|++.+...+ -.|+| +|=+.+ ..+| .-||-...+.|.++.||.+
T Consensus 131 ~l~iP~g~~v~~~ltS~D-ViHsf-------~vP~l~-----------------~k~d---aiPG~~~~~~~~~~~~G~y 182 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSAD-TMTSF-------WIPQLG-----------------GQKY---AMTGMTMNWYLQADQVGTY 182 (217)
T ss_pred cEEEECCCEEEEEEECCc-hhhhh-------hchhhC-----------------ceee---cCCCceEEEEEEeCCCEEE
Confidence 356788999999999874 34655 432221 1234 4478889999999999999
Q ss_pred EEeeccccc-eeccceEEEEEecCCC
Q 007633 514 NLRAENLDT-WYLGQEVYVNVINPEI 538 (595)
Q Consensus 514 ~~HCHil~H-~~~GM~~~~~V~~~~~ 538 (595)
--.|=-.-- -|.-|...++|++++.
T Consensus 183 ~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 183 RGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEehhhcCccccCCeEEEEEeCHHH
Confidence 999975433 3677888888887753
No 91
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=58.13 E-value=26 Score=36.54 Aligned_cols=70 Identities=26% Similarity=0.370 Sum_probs=38.2
Q ss_pred eeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCcee---eeCCccCCC-------CCCC------CCCCC-CCCccC
Q 007633 48 DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLL---TWNGVQHRK-------NSWQ------DGVLG-TNCPIP 110 (595)
Q Consensus 48 ~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~i---H~HG~~~~~-------~~~~------DGv~~-tq~~I~ 110 (595)
+..++-..|=+.||-++++ .++|+|+.+++..| ..-|++... +.+. +|... .+.||+
T Consensus 249 V~~~v~~A~Y~vpgR~l~~------~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~ 322 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTM------TLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIA 322 (381)
T ss_dssp EEEEEEEEEEESSSSEEEE------EEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-
T ss_pred eEEEEeccEEecCCcEEEE------EEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcC
Confidence 5556666666788888865 58899998876542 223333211 1111 12223 346999
Q ss_pred CCCeEEEEEEECC
Q 007633 111 AGWNWTYQFQVKD 123 (595)
Q Consensus 111 PG~~~~Y~f~~~~ 123 (595)
|||+.+.+..+.|
T Consensus 323 PGETrtl~V~a~d 335 (381)
T PF04744_consen 323 PGETRTLTVEAQD 335 (381)
T ss_dssp TT-EEEEEEEEE-
T ss_pred CCceEEEEEEeeh
Confidence 9999999999854
No 92
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.00 E-value=48 Score=32.63 Aligned_cols=77 Identities=10% Similarity=0.165 Sum_probs=54.5
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+...+- .|. |+|-+.| --...-||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-iHs-------f~iP~lg--------------------~k~daiPG~~~~~~~~~~~~G~ 191 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV-LHS-------WTVPALG--------------------VKMDAVPGRLNQATFIISRPGL 191 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc-ccc-------ccccccC--------------------ceeEecCCceEEEEEEeCCcEE
Confidence 45678899999999998754 344 4443221 1123457888888999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
+.-.|.-+=.. |.-|-..++|++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (230)
T MTH00185 192 YYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEchhhcCcCcCCCeEEEEEECHH
Confidence 99999975544 56677778877654
No 93
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=57.49 E-value=48 Score=32.60 Aligned_cols=77 Identities=8% Similarity=0.147 Sum_probs=54.9
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.|++.+...+- .|. |+|-+.+ ... ..-||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-iHs-------f~ip~lg-----------------~k~---daiPG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV-LHS-------WAVPSLG-----------------LKT---DAIPGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECcc-ccc-------ccccccc-----------------cce---ecCCCceEEEEEecCCcEE
Confidence 45678999999999998753 344 4443221 112 3457888889999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
+..-|.-.-.. |.-|-..++|++++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHH
Confidence 99999965444 66777778887665
No 94
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=56.83 E-value=1.3e+02 Score=25.92 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=14.0
Q ss_pred EEEEEEeCCC-ceeeEEEeCCc
Q 007633 229 RLRVHNVGIS-TSLNFRIQNHN 249 (595)
Q Consensus 229 rlRliNag~~-~~~~~~i~gh~ 249 (595)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 6788887775 46666665544
No 95
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=55.86 E-value=12 Score=32.23 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=30.5
Q ss_pred EEEEECCCCCc---eeeeCCccCCC---CCCCCCCCCCCCccCCCCeEEEEEEE
Q 007633 74 VNVKNDLDEPL---LLTWNGVQHRK---NSWQDGVLGTNCPIPAGWNWTYQFQV 121 (595)
Q Consensus 74 v~v~N~l~~~~---~iH~HG~~~~~---~~~~DGv~~tq~~I~PG~~~~Y~f~~ 121 (595)
|++.|..+.+. +=|||=-...+ .-.-+||-|.|--|+||++|+|.=-+
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~ 87 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGC 87 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCc
Confidence 56667665543 45887432211 12235677788889999999997544
No 96
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=55.33 E-value=47 Score=32.67 Aligned_cols=78 Identities=8% Similarity=0.141 Sum_probs=56.5
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.|.+.+.+.+ -.|.|.+-+... -+..-||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~vP~~~~---------------------------k~daiPG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VIHSWTVPSLGV---------------------------KVDAVPGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-ccccccccccCc---------------------------ceecCCCceEEEEEEeCCCEE
Confidence 4567889999999999974 446554433222 124457888889999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPEI 538 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~~ 538 (595)
+..-|.-+=.. |.-|-..++|++++.
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTKS 218 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHHH
Confidence 99999865444 677777888887653
No 97
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=54.96 E-value=54 Score=27.96 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=45.1
Q ss_pred EEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcchhhhcCceeeEEEeccC
Q 007633 73 VVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRD 152 (595)
Q Consensus 73 ~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 152 (595)
.|+++|.|.....|..|=-. ...| .| ...+.||+.+.++|.. +-.|+--|.|+... ....-..-+.|....
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S----~d~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~~ 72 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKS----KDDD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRSS 72 (110)
T ss_pred EEEEEECCCCCCeEEEEeeC----CCcc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEecc
Confidence 48899999665555555431 1122 11 1358999999999987 35677778899876 111136667776543
No 98
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=54.86 E-value=38 Score=28.09 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=40.3
Q ss_pred EecCcEEEEEEE--EeCCCceeeEEEeCC--ceeEEeecCcceeeeeeeEEEEeccceEEEEEEeCCCC--CcceEEEEe
Q 007633 222 VEPGKTYRLRVH--NVGISTSLNFRIQNH--NLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNA--SSDYYIVAS 295 (595)
Q Consensus 222 v~~G~~~rlRli--Nag~~~~~~~~i~gh--~~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~--g~~y~i~a~ 295 (595)
-+|||++.+|++ +... ... ...++ .++|..-+|..+..... ........++..++.+..+ | .|.|++.
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~--~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G-~y~i~~~ 84 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFK--PPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLG-TYTIRVK 84 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCS--CESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---E-EEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-ccc--cccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCE-eEEEEEE
Confidence 469999999999 6662 111 12222 35555666665532211 1335677888888877653 6 8999887
Q ss_pred ec
Q 007633 296 PR 297 (595)
Q Consensus 296 ~~ 297 (595)
..
T Consensus 85 ~~ 86 (99)
T PF01835_consen 85 TD 86 (99)
T ss_dssp ET
T ss_pred Ec
Confidence 64
No 99
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=53.83 E-value=61 Score=32.13 Aligned_cols=78 Identities=6% Similarity=0.153 Sum_probs=56.6
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.|++.+... +-.|.|.+-.-.. .+| .-||-...+.+.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~-DViHsf~iP~lgv------------------------K~D---aiPG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA-DVLHSFAVPSLGL------------------------KID---AVPGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcC-CcccceeecccCc------------------------eee---cCCCcceeEEEEcCCCEE
Confidence 456788999999999877 4557765532221 133 347777888999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPEI 538 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~~ 538 (595)
+.-.|.-.-.. |.-|-..++|++++.
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~~ 229 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLDK 229 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHHH
Confidence 99999975544 667777788887653
No 100
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.30 E-value=63 Score=31.74 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=54.8
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+...+- .|. |+|-+.+ =-+..-||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-iHs-------f~vP~lg--------------------~K~DavPG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDV-LHS-------WAVPSLG--------------------VKTDAVPGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecch-hhc-------ccccccC--------------------ceeEecCCceEEEEEEEcccce
Confidence 45678899999999998754 344 4543322 1124457888899999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
+.--|--+=.. |.-|-..++|++++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCHH
Confidence 99999865544 56677777777654
No 101
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=51.60 E-value=63 Score=26.38 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=42.0
Q ss_pred CCCeEEee---cCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEc
Q 007633 60 PGPILNVT---TNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYF 131 (595)
Q Consensus 60 PgP~I~v~---~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH 131 (595)
+.|.+.++ ....|.|++.|....+..++...... ..+.+ .+..|+||++.+..|... ..--||.
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 45666665 24589999999988877776655322 11211 346799999999999883 2334553
No 102
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=49.61 E-value=81 Score=33.45 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=42.5
Q ss_pred CceeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEe
Q 007633 216 PYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (595)
Q Consensus 216 ~~~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~ 295 (595)
....++|++|+ ++|.+.|.+... .. |.++ +|..+. -..=.|.||.+..+.+++. +| .|.+.+.
T Consensus 42 ~p~~~tVpAG~-~~f~V~N~~~~~-~E-------fe~~--~~~~vv---~e~EnIaPG~s~~l~~~L~--pG-tY~~~C~ 104 (375)
T PRK10378 42 EPMTLTVNAGK-TQFIIQNHSQKA-LE-------WEIL--KGVMVV---EERENIAPGFSQKMTANLQ--PG-EYDMTCG 104 (375)
T ss_pred ccCceeeCCCC-EEEEEEeCCCCc-ce-------EEee--cccccc---ccccccCCCCceEEEEecC--Cc-eEEeecC
Confidence 56889999996 999999998753 33 3333 222110 0112789998888777663 78 9999883
No 103
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=47.00 E-value=81 Score=24.27 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=34.5
Q ss_pred eeEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceEEEEEEeCCCCCcceEEEEe
Q 007633 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (595)
Q Consensus 218 ~~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~~~~g~~y~i~a~ 295 (595)
-.|++++|+++++.+-+.+.. ..+.|...+|..+....... -..+..-.+.+.+. .+| .|+|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~d---------~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~G-tYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSGD---------ADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAG-TYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTSS---------EEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSE-EEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCCC---------eEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCE-EEEEEEE
Confidence 578999999999888765542 12445555544332211111 11122222334444 567 8888764
No 104
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=45.99 E-value=91 Score=27.51 Aligned_cols=64 Identities=8% Similarity=0.156 Sum_probs=42.3
Q ss_pred eEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcce-------eeeeeeEEEEeccceEEEEEEeCCCCC
Q 007633 219 LINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT-------VQQNYTNMDIHVGQSFSFLVTTDQNAS 287 (595)
Q Consensus 219 ~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~-------~p~~~d~l~i~pGqR~dvlv~~~~~~g 287 (595)
.|++.....|+|++-.. ...++.|+|..+ ++.++..- .+....++.+..|++|.|.|...+..+
T Consensus 53 ~~~~~~~G~y~f~~~~~---d~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~ 123 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSD---DGARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGG 123 (145)
T ss_dssp EEEESSSEEEEEEEEES---SEEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSC
T ss_pred EEecccCceEEEEEEec---ccEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCC
Confidence 36676667899999843 356677887755 55555432 345567889999999999998764433
No 105
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.51 E-value=95 Score=30.54 Aligned_cols=77 Identities=6% Similarity=0.163 Sum_probs=55.0
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+... +-.|.|.+-.... ..| .-||-...+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~-DViHsf~iP~lg~------------------------k~d---aiPG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSA-DVLHSWAVPSLGV------------------------KMD---AVPGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEEC-CccccccccccCc------------------------eee---cCCCceEEEEEEcCCCEE
Confidence 456788999999988877 4457665533221 133 347888889999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
+...|--+-.. |.-|-..++|++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFN 217 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 99999865544 55666677777665
No 106
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.49 E-value=85 Score=30.87 Aligned_cols=77 Identities=9% Similarity=0.143 Sum_probs=54.6
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+...+ -.|.| +|-+.+ ... ..-||....+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf-------~vP~lg-----------------~k~---da~PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED-VLHSW-------AVPSLG-----------------IKT---DAIPGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecc-ccccc-------cccccC-----------------ceE---EccCCcceeEEEEeCCcEE
Confidence 4567889999999999874 34554 442221 112 3347888888999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
+.--|.-+-.. |..|-..++|++++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHH
Confidence 99999965444 67777788887664
No 107
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=40.31 E-value=1.7e+02 Score=25.51 Aligned_cols=64 Identities=6% Similarity=0.168 Sum_probs=38.4
Q ss_pred eEEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcce-eeeeeeEEEEeccceEEEEEEeCCCCC
Q 007633 219 LINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT-VQQNYTNMDIHVGQSFSFLVTTDQNAS 287 (595)
Q Consensus 219 ~l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~l~i~pGqR~dvlv~~~~~~g 287 (595)
.|++.....|+|++... ....+.|+|.. |++.++..- .+.....+.+..|++|.|.|...+..+
T Consensus 51 ~i~~~~~G~y~f~~~~~---~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 51 YLKPPEDGEYTFSITSD---DGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EEECCCCccEEEEEEcC---CcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 35555556789988543 34567888753 344443222 123345688888888888887764433
No 108
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.93 E-value=1.4e+02 Score=29.53 Aligned_cols=78 Identities=5% Similarity=0.128 Sum_probs=55.2
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+.+. +-.|.|.+=.... .. ..-||....+.|.++.||.
T Consensus 144 n~lvlP~~~~v~~~itS~-DViHsf~vp~lg~------------------------k~---daiPG~~~~~~~~~~~~G~ 195 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAA-DVLHSFAVPSLSV------------------------KI---DAVPGRLNQTSFFIKRPGV 195 (234)
T ss_pred eEEEEecCcEEEEEEEeC-chhccccccccCc------------------------ee---EccCCceEeEEEEeCCCEE
Confidence 456788999999999987 4446554422111 12 3457888888999999999
Q ss_pred eEEeeccccc-eeccceEEEEEecCCC
Q 007633 513 WNLRAENLDT-WYLGQEVYVNVINPEI 538 (595)
Q Consensus 513 W~~HCHil~H-~~~GM~~~~~V~~~~~ 538 (595)
+---|.-+=. -|.-|-..++|++++.
T Consensus 196 y~g~Cse~CG~~Hs~M~i~v~vv~~~~ 222 (234)
T MTH00051 196 FYGQCSEICGANHSFMPIVIEGVSLDK 222 (234)
T ss_pred EEEEChhhcCcccccCeeEEEEECHHH
Confidence 9999996443 3567777788887653
No 109
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=38.70 E-value=1.1e+02 Score=23.51 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=28.0
Q ss_pred EEEecCcEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceE
Q 007633 220 INVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSF 276 (595)
Q Consensus 220 l~v~~G~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~ 276 (595)
+++.+|+..+||.-. ...+.+.+-.++|.. ||. .+-+.|.+||++
T Consensus 2 ~~L~~g~~~~lr~~~-----~~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l 46 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-----GQRLRVESGRVWLTR-EGD------PDDYWLQAGDSL 46 (63)
T ss_pred EEeCCCceEEeEcCC-----CcEEEEccccEEEEC-CCC------CCCEEECCCCEE
Confidence 677789988988544 233677777777754 442 233455666655
No 110
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=37.08 E-value=3.2e+02 Score=30.88 Aligned_cols=46 Identities=15% Similarity=-0.039 Sum_probs=28.7
Q ss_pred CCCCCCCcccEEEeCCCcEE--EEEEEecCcceeEEeeccccceeccce
Q 007633 482 YNKWDGVARSTTQVFPGAWT--AILVYLDNAGIWNLRAENLDTWYLGQE 528 (595)
Q Consensus 482 ~n~~~p~~rDTv~v~p~g~~--~irf~adNPG~W~~HCHil~H~~~GM~ 528 (595)
.+..||..|+ |.||-+..+ .++.+....|.|||-..|...-|..|-
T Consensus 317 ~~~~n~~~R~-vrvPl~nR~ar~~k~~~~F~~dWlf~sEv~F~S~~an~ 364 (807)
T KOG1094|consen 317 GDLGNPRARA-VRVPLHNRVARFLKIRFLFAGDWLFFSEVSFISDAANN 364 (807)
T ss_pred cccCCCccce-EEeeccchhhheeEEEEEcCCceEEEEEEEEeechhhh
Confidence 4566788885 567744332 344444556779999999665555443
No 111
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.20 E-value=1.4e+02 Score=29.27 Aligned_cols=77 Identities=9% Similarity=0.185 Sum_probs=54.7
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+...+ -.|.|-+-. .+ ..+| .-||-...+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~vp~-------l~-----------------~k~d---avPG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD-VIHSWTVPS-------LG-----------------VKVD---AVPGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCc-hhhheeccc-------cC-----------------Ceee---cCCCceEEEEEEEcCceE
Confidence 4567889999999888774 456664422 11 1233 347888889999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
+.-.|--+=-. |.-|-..++|++++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~ 217 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVN 217 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHH
Confidence 99999865433 56677778887665
No 112
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=35.57 E-value=98 Score=32.01 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=53.8
Q ss_pred EEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCccee
Q 007633 434 LINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W 513 (595)
-+.++.|..|++.+...+- .|+| +|-.. +--+..-||-...+.|.+|.||.|
T Consensus 152 eL~iP~g~pV~f~lTS~DV-iHSF-------~IP~L--------------------g~K~damPG~~n~l~~~a~~~G~Y 203 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSV-MNSF-------FIPRL--------------------GSQIYAMAGMQTRLHLIANEPGTY 203 (315)
T ss_pred cEEEecCCEEEEEEEEchh-hhhh-------hhhhh--------------------CCeeecCCCceeEEEEEcCCCEEE
Confidence 4567889999999998743 4655 44222 222344578888999999999999
Q ss_pred EEeeccccce-eccceEEEEEe-cCC
Q 007633 514 NLRAENLDTW-YLGQEVYVNVI-NPE 537 (595)
Q Consensus 514 ~~HCHil~H~-~~GM~~~~~V~-~~~ 537 (595)
.-.|-..--. |..|...+.|+ +++
T Consensus 204 ~G~CaEyCG~gHs~M~f~v~v~~~~~ 229 (315)
T PRK10525 204 DGISASYSGPGFSGMKFKAIATPDRA 229 (315)
T ss_pred EEEChhhcCccccCCeEEEEEECCHH
Confidence 9999865433 56777777776 344
No 113
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=35.16 E-value=2.5e+02 Score=23.09 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=34.5
Q ss_pred EEecCcEE--EEEEEEeCCCceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceEEEEEEeC
Q 007633 221 NVEPGKTY--RLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTD 283 (595)
Q Consensus 221 ~v~~G~~~--rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~ 283 (595)
.+..|++| .+.|.|.|.. ..+|++.-.. ...... -.....-.|.||+..++.|++.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~~-----~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSI-PARFRVRQPE-----SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred EEccCCEEEEEEEEEECCCC-CEEEEEEeCC-----cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 46678877 7999999986 4555553211 001111 1111234699999999999887
No 114
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=33.84 E-value=98 Score=25.61 Aligned_cols=49 Identities=16% Similarity=0.380 Sum_probs=27.3
Q ss_pred EEEEEEEEeCCCceeeEEEeCCceeEEeecCccee---e-eeeeEEEEeccceEEE
Q 007633 227 TYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTV---Q-QNYTNMDIHVGQSFSF 278 (595)
Q Consensus 227 ~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~---p-~~~d~l~i~pGqR~dv 278 (595)
.|++||-|.+.. .+.|-...+.+...||...+ + +.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 379999998886 34555666666666664322 1 1224556788887644
No 115
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=33.62 E-value=1.3e+02 Score=26.25 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=34.4
Q ss_pred CCeEEeecCCEEEEEEEECCCC---CceeeeC----CccCC-CCCCCCCCCCCCCccCCCCeEEEEEEEC
Q 007633 61 GPILNVTTNWNVVVNVKNDLDE---PLLLTWN----GVQHR-KNSWQDGVLGTNCPIPAGWNWTYQFQVK 122 (595)
Q Consensus 61 gP~I~v~~Gd~v~v~v~N~l~~---~~~iH~H----G~~~~-~~~~~DGv~~tq~~I~PG~~~~Y~f~~~ 122 (595)
+..=.+++|..+.+.+.=..++ ......| |+... .-+..||=-...|||..|+.++|.+..+
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 3445567777776666522222 2223333 43222 1122455222469999999999999774
No 116
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.96 E-value=1.6e+02 Score=28.81 Aligned_cols=77 Identities=9% Similarity=0.141 Sum_probs=55.1
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+...+ -.|.|.+-. .+ ...| .-||-...+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~vP~-------lg-----------------~k~d---aiPG~~n~~~~~~~~~G~ 191 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSAD-VLHSWTLPS-------LG-----------------LKMD---AVPGRLNQLAFLSSRPGS 191 (225)
T ss_pred ceEEEecCCEEEEEEEeCC-hhhcccccc-------cc-----------------cccc---CCCCeEEEEEEEcCCCEE
Confidence 4567899999999999874 456665421 11 1233 347888889999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
+.--|.-+--. |.-|-..++|++++
T Consensus 192 ~~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (225)
T MTH00168 192 FYGQCSEICGANHSFMPIVVEFVPWE 217 (225)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 99999965433 66777778887664
No 117
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=32.38 E-value=1.9e+02 Score=24.85 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=27.0
Q ss_pred EEEEEEEEeCCCc-eeeEEEeCCc-eeEEeecCcceeeeeeeEEEEeccceEEEEEEeC
Q 007633 227 TYRLRVHNVGIST-SLNFRIQNHN-LLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTD 283 (595)
Q Consensus 227 ~~rlRliNag~~~-~~~~~i~gh~-~~via~DG~~~~p~~~d~l~i~pGqR~dvlv~~~ 283 (595)
.|+++|+|-+... .+.+.++|.+ +++ . ...+.+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAEL--------Q-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEE--------E-CCCcceEECCCCEEEEEEEEE
Confidence 4899999999863 5666666632 222 1 124678889999887766543
No 118
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=30.72 E-value=4.2e+02 Score=24.20 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=40.0
Q ss_pred CCeeEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCc---eeeeCCccC-----C-CCCCCCCCC-C-----CCCccC
Q 007633 46 LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPL---LLTWNGVQH-----R-KNSWQDGVL-G-----TNCPIP 110 (595)
Q Consensus 46 ~G~~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~---~iH~HG~~~-----~-~~~~~DGv~-~-----tq~~I~ 110 (595)
+|....+-.=|-.. +.=...+|.+..|.+.=..++.+ .--.||+-. . +-+..||-. + -.||+.
T Consensus 34 ~g~~~~V~i~~C~t--~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~ 111 (158)
T KOG4063|consen 34 DGTPLEVKIDGCPT--TPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLS 111 (158)
T ss_pred CCcceEEEecCCCC--CceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCccc
Confidence 44444443333322 24456677776666554443211 111233322 1 123455544 1 459999
Q ss_pred CCCeEEEEEEEC
Q 007633 111 AGWNWTYQFQVK 122 (595)
Q Consensus 111 PG~~~~Y~f~~~ 122 (595)
+||+++|.+..|
T Consensus 112 age~ytY~~slp 123 (158)
T KOG4063|consen 112 AGEDYTYLNSLP 123 (158)
T ss_pred CCCceEEEEEee
Confidence 999999999886
No 119
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.59 E-value=1.7e+02 Score=29.44 Aligned_cols=77 Identities=9% Similarity=0.115 Sum_probs=54.5
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|..+++.+... +-.|.|.+ -+.+ ..+|. -||-...+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~-DViHSf~v-------P~lg-----------------vK~Da---iPGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAA-DVLHSWTV-------PSLA-----------------VKMDA---VPGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcC-ccccceec-------cccc-----------------CcccC---CCCceeeEEEEcCCcEE
Confidence 456788999999988876 44465543 2221 12343 36777788999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
+.-.|.-+=-. |..|-..++|++++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~ 251 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLS 251 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHH
Confidence 99999965433 67788888888765
No 120
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.13 E-value=1.9e+02 Score=28.28 Aligned_cols=77 Identities=13% Similarity=0.260 Sum_probs=55.0
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+... +-.|.|.+ -+.+ ..+|. -||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~-DViHsf~v-------P~l~-----------------~K~Da---iPG~~n~~~~~~~~~G~ 191 (226)
T MTH00139 140 NRLVLPYKSNIRALITAA-DVLHSWTV-------PSLG-----------------VKIDA---VPGRLNQVGFFINRPGV 191 (226)
T ss_pred ceEEEecCCEEEEEEecC-ccccceec-------cccC-----------------ccccC---CCCcEEEEEEEcCCCEE
Confidence 456788999999988877 44566644 2221 12454 36888889999999999
Q ss_pred eEEeeccccce-eccceEEEEEecCC
Q 007633 513 WNLRAENLDTW-YLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~H~-~~GM~~~~~V~~~~ 537 (595)
+.-.|--+=-. |.-|-..++|++++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (226)
T MTH00139 192 FYGQCSEICGANHSFMPIVVEAISPK 217 (226)
T ss_pred EEEEChhhcCcCcCCCeEEEEEeCHH
Confidence 99999865433 66777778887664
No 121
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.11 E-value=2.2e+02 Score=27.99 Aligned_cols=77 Identities=8% Similarity=0.094 Sum_probs=55.2
Q ss_pred eEEecCCCcEEEEEEEcCCCccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcce
Q 007633 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGI 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~ 512 (595)
+.+.++.|+.+++.+...+ -.|.|.+-.-. ...|. -||-...+.+.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~D-ViHSf~vP~lg------------------------~K~Da---vPGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSD-VIHSWALPSLS------------------------IKMDA---MSGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCc-ccccccccccC------------------------ceeec---cCCceEEEEEEEcCceE
Confidence 4456889999999999874 45766543211 12343 36778888999999999
Q ss_pred eEEeecccc-ceeccceEEEEEecCC
Q 007633 513 WNLRAENLD-TWYLGQEVYVNVINPE 537 (595)
Q Consensus 513 W~~HCHil~-H~~~GM~~~~~V~~~~ 537 (595)
+.-.|--.= -.|..|-..++|++++
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 220 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLLD 220 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECHH
Confidence 999998543 3467788888888765
No 122
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=29.80 E-value=39 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=26.3
Q ss_pred EEEcCCCCCCeEEeecCCEEEEEEEECCCC
Q 007633 53 IGINGQFPGPILNVTTNWNVVVNVKNDLDE 82 (595)
Q Consensus 53 ~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~ 82 (595)
..+||+.-=|.=.|+.||.|.|++.|..-.
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 578999888999999999999999998643
No 123
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.25 E-value=3e+02 Score=26.28 Aligned_cols=76 Identities=16% Similarity=-0.073 Sum_probs=49.5
Q ss_pred eEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEECCceeeeEEccCcc-hhhhcC
Q 007633 63 ILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD-FQRAAG 141 (595)
Q Consensus 63 ~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~~G 141 (595)
.+.+..|..|+++++-. |.-+++...++. ..+| .-||..-...|++ +++|+|.-.|..= ..-.+.
T Consensus 117 ~l~lp~g~~v~~~ltS~-DViHsf~vp~l~----~k~d--------~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~~ 182 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-DVIHSFSVPDLN----LKMD--------AIPGRINHLFFCP-DRHGVFVGYCSELCGVGHSY 182 (194)
T ss_pred eEEEeCCCEEEeeeecC-ccccceeccccC----ceee--------cCCCceEEEEEEc-CCCEEEEEEeehhhCcCccc
Confidence 47788888888888765 333333322221 1122 4578888888887 6899999999831 222346
Q ss_pred ceeeEEEeccC
Q 007633 142 GYGGIIINNRD 152 (595)
Q Consensus 142 l~G~liV~~~~ 152 (595)
|.+.+.|.+++
T Consensus 183 M~~~v~v~~~~ 193 (194)
T MTH00047 183 MPIVIEVVDVD 193 (194)
T ss_pred CcEEEEEEcCC
Confidence 88888887754
No 124
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=29.02 E-value=50 Score=26.68 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=15.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhh
Q 007633 569 SGAPSVVDASITVLLAFVIALFSYL 593 (595)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (595)
.+..-...+++++|++|.|+.|+.+
T Consensus 18 ~~~~l~pn~lMtILivLVIIiLlIm 42 (85)
T PF10717_consen 18 NLNGLNPNTLMTILIVLVIIILLIM 42 (85)
T ss_pred cccccChhHHHHHHHHHHHHHHHHH
Confidence 3444456888888877666555444
No 125
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=28.97 E-value=91 Score=27.64 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=15.2
Q ss_pred CCCCCCCCCccCCCCeEEEEE
Q 007633 99 QDGVLGTNCPIPAGWNWTYQF 119 (595)
Q Consensus 99 ~DGv~~tq~~I~PG~~~~Y~f 119 (595)
-+||-|.|--|.||++|.|.=
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYTS 86 (127)
T ss_pred CCceecCCceECCCCCeEEeC
Confidence 356666667799999887753
No 126
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=26.69 E-value=1.7e+02 Score=25.92 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=30.2
Q ss_pred EEEEEEEEeCCCceeeEEEeCCceeEEeecCccee---e-eeeeEEEEeccceEE
Q 007633 227 TYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTV---Q-QNYTNMDIHVGQSFS 277 (595)
Q Consensus 227 ~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~---p-~~~d~l~i~pGqR~d 277 (595)
.|++||-|.+.. .+.+-...+.+...||...+ + +.-..=.|.|||.+.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~ 83 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFE 83 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeE
Confidence 379999997754 35666777777777775332 1 222344567777654
No 127
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=26.52 E-value=64 Score=27.44 Aligned_cols=21 Identities=29% Similarity=0.467 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHhhhhcC
Q 007633 575 VDASITVLLAFVIALFSYLIR 595 (595)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~ 595 (595)
...++.+++.+.+|+++|++|
T Consensus 53 ~~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 53 NSMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHcC
Confidence 456677777888888888876
No 128
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=25.81 E-value=1.6e+02 Score=26.21 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=30.8
Q ss_pred ccceeeecCceEEEEEEeCCccCCCCCCCCCCCCCCcccEEEeCCCcEEEEEEEecCcceeEEeecc
Q 007633 453 TVQSYHMDGYAFFVVGMDFGVWTENSRGTYNKWDGVARSTTQVFPGAWTAILVYLDNAGIWNLRAEN 519 (595)
Q Consensus 453 ~~HP~HlHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~v~p~g~~~irf~adNPG~W~~HCHi 519 (595)
..|.+=+|--.||.+|+++| || +.|.+.+...=+++||+
T Consensus 74 ~LhSqPI~~IRvwGvGrdng-----------------rd-----------FA~vard~~T~~~~CHV 112 (138)
T cd01272 74 VLHSQPIHTIRVWGVGRDNG-----------------RD-----------FAYVIRDERTRGSNCHV 112 (138)
T ss_pred eEEeeeeeEEEEEEecCCCC-----------------cc-----------eEEEeecCCCceeEEEE
Confidence 35889999999999998765 34 45556677778999998
No 129
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=25.51 E-value=2.6e+02 Score=24.44 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=33.1
Q ss_pred CeEEeecCCEEEEEEEECCCCC-----ceeee--CCccCCCC-CCCCCCC--CCCCccCCCCeEEEEEEEC
Q 007633 62 PILNVTTNWNVVVNVKNDLDEP-----LLLTW--NGVQHRKN-SWQDGVL--GTNCPIPAGWNWTYQFQVK 122 (595)
Q Consensus 62 P~I~v~~Gd~v~v~v~N~l~~~-----~~iH~--HG~~~~~~-~~~DGv~--~tq~~I~PG~~~~Y~f~~~ 122 (595)
+.=.+.+|..+.+.+.=..++. +.+|+ -|+...-. +..|+=. +..|||.+|+.++|.+..+
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 3445666777666665322221 22332 24433211 1234421 2679999999999999764
No 130
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=24.42 E-value=47 Score=34.69 Aligned_cols=54 Identities=19% Similarity=0.406 Sum_probs=28.1
Q ss_pred CCCCCCCC-CCCccCCCCeEEEEEEEC-CceeeeEEccCcchhhhcCceee---EEEec
Q 007633 97 SWQDGVLG-TNCPIPAGWNWTYQFQVK-DQIGSFFYFPSLDFQRAAGGYGG---IIINN 150 (595)
Q Consensus 97 ~~~DGv~~-tq~~I~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~---liV~~ 150 (595)
.|+.|.+. ...++..|+++.|+..++ -.+|+|=-|+-.+.+-...+.|+ +.|+.
T Consensus 70 ~~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~g 128 (381)
T PF04744_consen 70 RWINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIEG 128 (381)
T ss_dssp EEETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEES
T ss_pred eeecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEec
Confidence 45556554 446799999999988775 46999744444444444445555 44553
No 131
>COG1470 Predicted membrane protein [Function unknown]
Probab=24.13 E-value=4.8e+02 Score=28.50 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=48.5
Q ss_pred eeEEEecCcE--EEEEEEEeCCC--ceeeEEEeCCceeEEeecCcceeeeeeeEEEEeccceEEEE--EEeCCC--CCcc
Q 007633 218 QLINVEPGKT--YRLRVHNVGIS--TSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFL--VTTDQN--ASSD 289 (595)
Q Consensus 218 ~~l~v~~G~~--~rlRliNag~~--~~~~~~i~gh~~~via~DG~~~~p~~~d~l~i~pGqR~dvl--v~~~~~--~g~~ 289 (595)
..+++.+|+- .+++|-|.|.. ..+.+.+++-.=|=+.+|+..+. .|.||+|-.|- ++++.. +| +
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~-------sL~pge~~tV~ltI~vP~~a~aG-d 460 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIP-------SLEPGESKTVSLTITVPEDAGAG-D 460 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECccccc-------ccCCCCcceEEEEEEcCCCCCCC-c
Confidence 5677888854 69999999964 35667777766677788876432 45677665544 455432 45 8
Q ss_pred eEEEEeecc
Q 007633 290 YYIVASPRF 298 (595)
Q Consensus 290 y~i~a~~~~ 298 (595)
|.+......
T Consensus 461 Y~i~i~~ks 469 (513)
T COG1470 461 YRITITAKS 469 (513)
T ss_pred EEEEEEEee
Confidence 998776643
No 132
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.07 E-value=66 Score=32.29 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=18.3
Q ss_pred eeEEccCcc---------------hhhhcCceeeEEEeccCC
Q 007633 127 SFFYFPSLD---------------FQRAAGGYGGIIINNRDV 153 (595)
Q Consensus 127 t~wYH~H~~---------------~q~~~Gl~G~liV~~~~~ 153 (595)
.=|||+|.+ .|+..--|-+++|+|...
T Consensus 134 VGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~Rt 175 (347)
T KOG1554|consen 134 VGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTRT 175 (347)
T ss_pred eeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCccc
Confidence 469999943 244455777888887654
No 133
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=23.67 E-value=4.4e+02 Score=23.85 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=37.9
Q ss_pred cEEEEEEEEeCCCceeeEEEeCCceeEEeecCcceeeee-------eeEEEEeccceE-EEEEEe
Q 007633 226 KTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQN-------YTNMDIHVGQSF-SFLVTT 282 (595)
Q Consensus 226 ~~~rlRliNag~~~~~~~~i~gh~~~via~DG~~~~p~~-------~d~l~i~pGqR~-dvlv~~ 282 (595)
.+|.|.+-|.|... +.++...++|+ +||+.+.|.. -+++.+.|||-- ++.+.-
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~ 130 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNE 130 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEecc
Confidence 57899999999863 35677777764 7888776533 257778999987 555543
No 134
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.41 E-value=85 Score=28.43 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=22.3
Q ss_pred CCccCCCCeEEEEEE-E--CCceeeeEEccC
Q 007633 106 NCPIPAGWNWTYQFQ-V--KDQIGSFFYFPS 133 (595)
Q Consensus 106 q~~I~PG~~~~Y~f~-~--~~~~Gt~wYH~H 133 (595)
..||+||++++-.++ + |...|+|.|++-
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 478999999999993 3 345699999876
No 135
>PRK13202 ureB urease subunit beta; Reviewed
Probab=22.25 E-value=1.7e+02 Score=24.85 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=38.6
Q ss_pred eEEeecC--CEEEEEEEECCCCCce--eeeCCccCCCCCCCCC---------CC-CCCCccCCCCeEEEEEEE
Q 007633 63 ILNVTTN--WNVVVNVKNDLDEPLL--LTWNGVQHRKNSWQDG---------VL-GTNCPIPAGWNWTYQFQV 121 (595)
Q Consensus 63 ~I~v~~G--d~v~v~v~N~l~~~~~--iH~HG~~~~~~~~~DG---------v~-~tq~~I~PG~~~~Y~f~~ 121 (595)
.|..++| +++.+.|+|..+.|.- -|+|=......-..|= .| ||..-..||++.+-+...
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4899999 5999999999998764 4777554432211221 12 344556788887776654
No 136
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=21.94 E-value=1.4e+02 Score=21.39 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=29.9
Q ss_pred CCCCcccEEE-eCCCcEEEEEEEecCcceeEEeecccccee
Q 007633 485 WDGVARSTTQ-VFPGAWTAILVYLDNAGIWNLRAENLDTWY 524 (595)
Q Consensus 485 ~~p~~rDTv~-v~p~g~~~irf~adNPG~W~~HCHil~H~~ 524 (595)
..|..+-+.. .+.|+...+++....-..+=+||..+.|..
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~ 44 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSD 44 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCH
Confidence 3455555333 456888889999999899999999998865
No 137
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.08 E-value=1.1e+02 Score=27.83 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=21.7
Q ss_pred EeCCCcEEEEEEEe-cCc---ceeEEeeccc
Q 007633 494 QVFPGAWTAILVYL-DNA---GIWNLRAENL 520 (595)
Q Consensus 494 ~v~p~g~~~irf~a-dNP---G~W~~HCHil 520 (595)
.|+||..+.|.++. .|| |+|.|+|-..
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 35789999999954 577 9999999874
No 138
>PF05326 SVA: Seminal vesicle autoantigen (SVA); InterPro: IPR007990 This family consists of seminal vesicle autoantigen and prolactin-inducible (PIP) proteins. Seminal vesicle autoantigen (SVA) is specifically present in the seminal plasma of mice. This 19 kDa secretory glycoprotein suppresses the motility of spermatozoa by interacting with phospholipid. PIP has several known functions. In saliva, this protein plays a role in host defence by binding to microorganisms such as Streptococcus. PIP is an aspartyl proteinase and it acts as a factor capable of suppressing T-cell apoptosis through its interaction with CD4 [].; GO: 0005576 extracellular region; PDB: 3ES6_B.
Probab=20.71 E-value=2.3e+02 Score=24.91 Aligned_cols=73 Identities=19% Similarity=0.335 Sum_probs=25.8
Q ss_pred eEEEEEEcCCCCCCeEEeecCCEEEEEEEECCCCCceeeeCCccCCCCCCCCCCCCCCCccCCCCeEEEEEEE-CCceee
Q 007633 49 KQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQV-KDQIGS 127 (595)
Q Consensus 49 ~~~~~~~Ng~~PgP~I~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~-~~~~Gt 127 (595)
.++.+..|=+.|-.+ +..+==+|.++|+|++.+-..+-.+=.. + .+|.+..+|.|..=+ ++.+-+
T Consensus 30 ~~k~l~l~l~~~~~~-~~~eev~v~l~V~t~~~eCmvVk~yl~s---n----------~~i~~~fny~YTaCLC~d~~r~ 95 (124)
T PF05326_consen 30 SRKPLSLNLQVPQTA-KANEEVTVTLTVTTELRECMVVKIYLES---N----------PPIDGSFNYKYTACLCDDYPRT 95 (124)
T ss_dssp -----EE-----SEE--SS--EEEEEEEEE--SS-EEEEEEEEE---S----------S---SGGG-EEEEEE-SSS-EE
T ss_pred cCccEEEEeecCCCC-CCCCEEEEEEEEEcchheeEEEEEEecc---C----------CCccccccceEEEEeCCCCCcc
Confidence 456677777766333 3333335667788999876554433221 1 234423344444444 345777
Q ss_pred eEEccCcc
Q 007633 128 FFYFPSLD 135 (595)
Q Consensus 128 ~wYH~H~~ 135 (595)
|+|-=++.
T Consensus 96 FyWDi~~~ 103 (124)
T PF05326_consen 96 FYWDIQVN 103 (124)
T ss_dssp EEEEE--S
T ss_pred EEEEEEEC
Confidence 77754543
Done!