Query 007634
Match_columns 595
No_of_seqs 1602 out of 3495
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 13:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 8.5E-93 1.8E-97 657.5 44.6 564 13-595 83-687 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 7.3E-49 1.6E-53 365.3 37.2 400 45-460 45-478 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 6.1E-38 1.3E-42 325.9 53.3 382 48-437 127-577 (615)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-36 1.4E-40 331.0 55.5 405 46-461 463-894 (899)
5 COG3914 Spy Predicted O-linked 100.0 1E-38 2.3E-43 298.0 27.4 299 282-595 47-364 (620)
6 PRK11447 cellulose synthase su 100.0 4.6E-35 1E-39 323.6 51.0 367 53-430 274-739 (1157)
7 PRK11447 cellulose synthase su 100.0 1.6E-34 3.4E-39 319.4 55.1 412 45-463 178-736 (1157)
8 PRK15174 Vi polysaccharide exp 100.0 3.2E-34 7E-39 296.5 49.4 364 46-436 40-408 (656)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 7.7E-34 1.7E-38 314.4 55.8 404 48-461 329-759 (899)
10 TIGR00990 3a0801s09 mitochondr 100.0 2.2E-33 4.7E-38 292.0 48.8 363 82-461 127-565 (615)
11 PRK15174 Vi polysaccharide exp 100.0 2.5E-33 5.4E-38 289.9 45.6 366 59-438 16-388 (656)
12 KOG0547 Translocase of outer m 100.0 1.3E-31 2.8E-36 244.1 40.3 380 48-436 115-571 (606)
13 PRK10049 pgaA outer membrane p 100.0 3.9E-31 8.4E-36 279.7 47.2 410 45-466 12-455 (765)
14 PRK10049 pgaA outer membrane p 100.0 1.7E-31 3.6E-36 282.4 43.6 380 44-439 45-464 (765)
15 PRK09782 bacteriophage N4 rece 100.0 3.2E-30 7E-35 271.9 51.5 391 42-439 38-714 (987)
16 KOG2002 TPR-containing nuclear 100.0 1.3E-30 2.8E-35 256.7 42.1 399 44-442 160-686 (1018)
17 KOG2002 TPR-containing nuclear 100.0 1.1E-30 2.5E-35 257.0 39.0 395 45-446 304-760 (1018)
18 KOG0548 Molecular co-chaperone 100.0 3.9E-29 8.5E-34 231.7 37.8 390 49-447 3-471 (539)
19 PRK09782 bacteriophage N4 rece 100.0 1.7E-27 3.8E-32 251.4 45.8 361 58-436 352-745 (987)
20 PF13844 Glyco_transf_41: Glyc 100.0 3.9E-32 8.5E-37 257.8 6.6 104 488-595 1-106 (468)
21 KOG1126 DNA-binding cell divis 100.0 2E-28 4.4E-33 232.8 27.7 307 117-437 318-626 (638)
22 KOG1155 Anaphase-promoting com 100.0 2.5E-26 5.5E-31 208.5 38.5 365 51-436 167-541 (559)
23 KOG0547 Translocase of outer m 100.0 5.3E-27 1.1E-31 214.2 33.9 358 84-457 117-556 (606)
24 KOG2076 RNA polymerase III tra 100.0 3.6E-26 7.8E-31 224.1 42.0 376 45-427 136-551 (895)
25 KOG1173 Anaphase-promoting com 100.0 1.3E-26 2.8E-31 215.8 36.7 390 45-442 46-529 (611)
26 PRK14574 hmsH outer membrane p 100.0 2.1E-25 4.6E-30 230.9 49.4 384 45-436 31-518 (822)
27 KOG1126 DNA-binding cell divis 100.0 1E-27 2.2E-32 228.0 27.4 291 98-402 335-625 (638)
28 KOG1155 Anaphase-promoting com 100.0 4.9E-25 1.1E-29 200.2 41.7 374 47-432 77-496 (559)
29 KOG0624 dsRNA-activated protei 100.0 5.3E-26 1.2E-30 198.5 31.6 324 44-367 34-374 (504)
30 PRK11788 tetratricopeptide rep 100.0 1.6E-25 3.4E-30 221.9 38.8 307 83-429 36-345 (389)
31 PRK11788 tetratricopeptide rep 100.0 6.5E-25 1.4E-29 217.5 40.0 302 46-395 33-345 (389)
32 KOG2003 TPR repeat-containing 100.0 9.9E-26 2.1E-30 204.0 28.9 380 48-442 201-700 (840)
33 KOG2003 TPR repeat-containing 100.0 7.8E-25 1.7E-29 198.2 32.4 367 51-427 240-718 (840)
34 PRK14574 hmsH outer membrane p 100.0 1.6E-23 3.5E-28 217.0 46.7 344 53-405 73-521 (822)
35 KOG1173 Anaphase-promoting com 99.9 1E-23 2.2E-28 196.7 36.2 403 46-459 14-510 (611)
36 KOG0624 dsRNA-activated protei 99.9 3.1E-24 6.7E-29 187.6 29.7 317 78-408 34-381 (504)
37 KOG4162 Predicted calmodulin-b 99.9 5.8E-23 1.2E-27 198.5 40.7 389 47-437 322-789 (799)
38 KOG0495 HAT repeat protein [RN 99.9 1.3E-22 2.9E-27 191.8 41.2 375 48-441 516-890 (913)
39 KOG2076 RNA polymerase III tra 99.9 1.6E-22 3.4E-27 198.9 41.4 337 82-432 139-513 (895)
40 KOG0495 HAT repeat protein [RN 99.9 1E-21 2.3E-26 185.8 44.1 380 60-456 418-869 (913)
41 KOG1174 Anaphase-promoting com 99.9 1.6E-22 3.4E-27 181.2 36.4 386 41-442 90-511 (564)
42 KOG0548 Molecular co-chaperone 99.9 1.6E-22 3.4E-27 188.1 33.0 360 52-427 40-485 (539)
43 TIGR00540 hemY_coli hemY prote 99.9 4.6E-21 1E-25 188.7 37.9 301 120-431 88-399 (409)
44 TIGR00540 hemY_coli hemY prote 99.9 8.9E-21 1.9E-25 186.7 38.4 302 48-396 84-398 (409)
45 PF13429 TPR_15: Tetratricopep 99.9 4.6E-24 9.9E-29 200.0 13.9 262 161-431 12-277 (280)
46 KOG1129 TPR repeat-containing 99.9 2.9E-21 6.4E-26 168.0 29.5 383 50-442 6-469 (478)
47 KOG1156 N-terminal acetyltrans 99.9 9.3E-20 2E-24 173.1 41.9 251 47-311 6-264 (700)
48 KOG1127 TPR repeat-containing 99.9 1.5E-21 3.1E-26 193.1 30.7 364 61-430 471-912 (1238)
49 PRK10747 putative protoheme IX 99.9 2.9E-20 6.4E-25 181.9 38.7 303 119-432 87-391 (398)
50 PLN03218 maturation of RBCL 1; 99.9 1.5E-18 3.3E-23 185.3 54.1 366 46-430 368-747 (1060)
51 KOG1174 Anaphase-promoting com 99.9 5.5E-20 1.2E-24 165.1 34.0 309 88-411 204-514 (564)
52 PF13429 TPR_15: Tetratricopep 99.9 3.8E-23 8.2E-28 193.8 14.4 261 50-326 10-274 (280)
53 KOG1129 TPR repeat-containing 99.9 2.1E-21 4.5E-26 168.9 22.4 244 161-412 227-473 (478)
54 KOG4162 Predicted calmodulin-b 99.9 1.2E-19 2.7E-24 175.7 36.3 350 46-402 355-788 (799)
55 PRK12370 invasion protein regu 99.9 2.2E-20 4.8E-25 190.8 32.8 249 98-363 277-535 (553)
56 PLN03081 pentatricopeptide (PP 99.9 1.2E-19 2.7E-24 192.0 39.1 397 46-463 121-553 (697)
57 PRK10747 putative protoheme IX 99.9 2.1E-19 4.6E-24 175.9 37.8 296 48-362 84-389 (398)
58 PRK12370 invasion protein regu 99.9 2.7E-20 5.8E-25 190.2 32.6 251 171-431 275-535 (553)
59 COG3063 PilF Tfp pilus assembl 99.9 1.5E-20 3.3E-25 156.4 24.5 214 42-260 29-242 (250)
60 PLN03218 maturation of RBCL 1; 99.9 1E-17 2.3E-22 179.0 52.1 358 56-433 414-785 (1060)
61 KOG1125 TPR repeat-containing 99.9 3E-21 6.5E-26 181.2 21.9 261 161-421 289-561 (579)
62 KOG0550 Molecular chaperone (D 99.9 1.6E-21 3.6E-26 175.1 19.3 302 44-400 45-353 (486)
63 KOG1125 TPR repeat-containing 99.9 6.8E-21 1.5E-25 178.9 22.6 266 46-318 283-560 (579)
64 PLN03077 Protein ECB2; Provisi 99.9 2E-18 4.4E-23 187.4 44.8 351 85-458 326-711 (857)
65 PLN03081 pentatricopeptide (PP 99.9 8.1E-18 1.7E-22 178.3 45.9 354 50-428 89-488 (697)
66 PRK11189 lipoprotein NlpI; Pro 99.9 2.4E-19 5.1E-24 167.9 26.5 123 62-191 40-166 (296)
67 KOG2376 Signal recognition par 99.9 4.4E-17 9.6E-22 153.5 41.1 393 47-450 11-506 (652)
68 PRK11189 lipoprotein NlpI; Pro 99.9 9.2E-19 2E-23 164.0 29.9 244 94-349 38-286 (296)
69 KOG1156 N-terminal acetyltrans 99.9 1.4E-17 3E-22 158.6 37.3 345 83-436 8-439 (700)
70 KOG1127 TPR repeat-containing 99.9 3.6E-19 7.9E-24 176.4 27.4 380 48-443 399-891 (1238)
71 TIGR02521 type_IV_pilW type IV 99.9 1.1E-18 2.3E-23 160.2 28.6 206 45-255 28-233 (234)
72 COG3063 PilF Tfp pilus assembl 99.9 8.3E-19 1.8E-23 146.1 24.2 205 192-437 36-242 (250)
73 KOG1915 Cell cycle control pro 99.8 3.5E-16 7.7E-21 143.4 42.8 393 46-441 71-545 (677)
74 KOG0550 Molecular chaperone (D 99.8 1.3E-19 2.9E-24 162.9 19.7 278 156-434 48-353 (486)
75 COG2956 Predicted N-acetylgluc 99.8 3.7E-17 8E-22 142.7 33.0 267 163-438 41-318 (389)
76 PLN03077 Protein ECB2; Provisi 99.8 4.4E-17 9.6E-22 177.0 42.1 359 46-431 321-720 (857)
77 COG2956 Predicted N-acetylgluc 99.8 2.2E-17 4.7E-22 144.2 30.9 275 120-405 39-319 (389)
78 KOG1840 Kinesin light chain [C 99.8 7.2E-18 1.6E-22 163.4 31.0 245 187-431 195-479 (508)
79 TIGR02521 type_IV_pilW type IV 99.8 4.7E-18 1E-22 156.0 27.8 202 191-433 31-234 (234)
80 KOG1840 Kinesin light chain [C 99.8 1.3E-17 2.8E-22 161.6 29.8 240 158-397 200-479 (508)
81 PLN02789 farnesyltranstransfer 99.8 5.7E-18 1.2E-22 157.5 26.4 209 202-415 48-268 (320)
82 PLN02789 farnesyltranstransfer 99.8 3.3E-17 7.1E-22 152.5 27.5 210 130-346 51-267 (320)
83 KOG3785 Uncharacterized conser 99.8 9.3E-16 2E-20 135.6 32.8 364 56-426 30-452 (557)
84 cd05804 StaR_like StaR_like; a 99.8 7.8E-16 1.7E-20 150.5 35.4 317 78-432 2-337 (355)
85 KOG1915 Cell cycle control pro 99.8 1.5E-14 3.2E-19 132.9 39.9 349 70-432 61-501 (677)
86 cd05804 StaR_like StaR_like; a 99.8 1.2E-15 2.6E-20 149.2 34.4 307 112-464 2-333 (355)
87 KOG3785 Uncharacterized conser 99.8 2.9E-15 6.3E-20 132.5 30.5 375 49-435 58-494 (557)
88 TIGR03302 OM_YfiO outer membra 99.7 6.4E-16 1.4E-20 141.1 24.0 191 42-256 27-234 (235)
89 PF12569 NARP1: NMDA receptor- 99.7 1.2E-13 2.5E-18 136.3 39.9 276 47-329 3-334 (517)
90 PRK15179 Vi polysaccharide bio 99.7 1.8E-14 4E-19 147.4 34.3 160 283-442 69-228 (694)
91 COG3071 HemY Uncharacterized e 99.7 2.7E-13 5.8E-18 122.8 36.4 298 123-431 91-390 (400)
92 KOG2376 Signal recognition par 99.7 1.9E-13 4.1E-18 129.3 35.7 337 84-432 14-447 (652)
93 KOG1130 Predicted G-alpha GTPa 99.7 8.1E-16 1.8E-20 138.6 18.3 294 122-419 23-372 (639)
94 COG3071 HemY Uncharacterized e 99.7 1E-12 2.2E-17 119.0 36.3 298 47-362 83-389 (400)
95 TIGR03302 OM_YfiO outer membra 99.7 6.4E-15 1.4E-19 134.5 22.4 182 77-279 28-223 (235)
96 PRK14720 transcript cleavage f 99.7 2.7E-14 5.8E-19 146.8 28.2 288 76-437 25-312 (906)
97 PRK15359 type III secretion sy 99.7 9.7E-16 2.1E-20 126.3 14.6 121 321-444 14-134 (144)
98 PRK04841 transcriptional regul 99.7 6.3E-13 1.4E-17 146.7 40.7 385 51-436 344-765 (903)
99 PRK15359 type III secretion sy 99.7 2E-15 4.4E-20 124.4 15.1 127 286-415 13-139 (144)
100 KOG1130 Predicted G-alpha GTPa 99.7 1.7E-15 3.7E-20 136.5 14.9 270 161-431 21-344 (639)
101 PF12569 NARP1: NMDA receptor- 99.7 8.1E-13 1.8E-17 130.4 34.5 312 81-397 3-334 (517)
102 KOG4340 Uncharacterized conser 99.7 6.1E-13 1.3E-17 115.3 28.3 360 56-436 18-448 (459)
103 PRK10370 formate-dependent nit 99.6 5.4E-14 1.2E-18 122.4 20.3 153 274-437 24-179 (198)
104 KOG3060 Uncharacterized conser 99.6 2.1E-13 4.6E-18 115.5 21.6 175 276-450 62-239 (289)
105 PRK04841 transcriptional regul 99.6 5.4E-12 1.2E-16 139.4 39.0 348 49-400 375-763 (903)
106 PRK14720 transcript cleavage f 99.6 1.9E-13 4.1E-18 140.7 24.2 219 186-443 26-264 (906)
107 PRK10370 formate-dependent nit 99.6 1.5E-13 3.3E-18 119.6 20.2 124 279-402 52-178 (198)
108 KOG2047 mRNA splicing factor [ 99.6 2.3E-11 5E-16 116.4 35.8 137 47-186 101-277 (835)
109 KOG3060 Uncharacterized conser 99.6 6.7E-12 1.5E-16 106.6 27.7 184 187-377 48-234 (289)
110 COG5010 TadD Flp pilus assembl 99.6 7E-13 1.5E-17 113.8 20.7 179 64-250 49-227 (257)
111 COG5010 TadD Flp pilus assembl 99.6 7.1E-13 1.5E-17 113.8 20.5 148 280-427 80-227 (257)
112 KOG1128 Uncharacterized conser 99.6 5.7E-13 1.2E-17 129.4 20.6 226 188-435 395-620 (777)
113 TIGR02552 LcrH_SycD type III s 99.5 2E-13 4.4E-18 112.7 15.1 118 321-438 4-121 (135)
114 PRK15179 Vi polysaccharide bio 99.5 1.3E-12 2.7E-17 134.0 21.6 148 73-227 77-224 (694)
115 KOG2047 mRNA splicing factor [ 99.5 1.7E-09 3.6E-14 104.0 40.4 373 48-433 248-689 (835)
116 KOG0553 TPR repeat-containing 99.5 2.3E-13 4.9E-18 119.0 13.3 114 334-447 81-194 (304)
117 PRK15363 pathogenicity island 99.5 6.1E-13 1.3E-17 106.6 13.9 105 328-432 28-133 (157)
118 KOG1128 Uncharacterized conser 99.5 1.6E-12 3.5E-17 126.3 19.5 217 160-398 401-617 (777)
119 TIGR02552 LcrH_SycD type III s 99.5 9E-13 2E-17 108.8 15.4 119 287-405 4-122 (135)
120 PF04733 Coatomer_E: Coatomer 99.5 1E-12 2.2E-17 121.1 15.9 168 191-368 102-270 (290)
121 KOG0553 TPR repeat-containing 99.5 7.6E-13 1.7E-17 115.8 13.8 107 46-152 79-185 (304)
122 PF04733 Coatomer_E: Coatomer 99.5 1.3E-12 2.8E-17 120.4 15.2 259 166-438 10-272 (290)
123 PRK15363 pathogenicity island 99.5 5.3E-12 1.1E-16 101.3 15.6 107 45-151 32-138 (157)
124 KOG4340 Uncharacterized conser 99.4 1.2E-10 2.7E-15 101.2 23.7 303 126-452 20-361 (459)
125 PRK10866 outer membrane biogen 99.4 2.2E-10 4.8E-15 103.1 24.1 183 44-250 28-237 (243)
126 PF13525 YfiO: Outer membrane 99.4 2.3E-10 4.9E-15 100.8 20.9 175 46-244 3-197 (203)
127 COG4783 Putative Zn-dependent 99.3 5.4E-10 1.2E-14 104.6 24.0 156 78-257 302-457 (484)
128 KOG3617 WD40 and TPR repeat-co 99.3 3.8E-09 8.2E-14 104.2 30.7 327 58-428 738-1171(1416)
129 COG4783 Putative Zn-dependent 99.3 2.1E-10 4.6E-15 107.2 20.8 158 297-454 303-460 (484)
130 PLN03088 SGT1, suppressor of 99.3 4.1E-11 8.8E-16 115.0 16.5 109 49-157 3-111 (356)
131 PRK10866 outer membrane biogen 99.3 1E-09 2.2E-14 98.9 22.8 175 80-275 30-228 (243)
132 PLN03088 SGT1, suppressor of 99.3 7.2E-11 1.6E-15 113.3 16.0 113 303-415 5-117 (356)
133 PF13525 YfiO: Outer membrane 99.3 1.4E-09 3.1E-14 95.7 20.7 175 81-276 4-195 (203)
134 PF14938 SNAP: Soluble NSF att 99.2 7.1E-10 1.5E-14 103.4 18.9 122 335-456 115-252 (282)
135 KOG1941 Acetylcholine receptor 99.2 4.5E-09 9.8E-14 94.2 22.0 280 123-431 50-360 (518)
136 TIGR02795 tol_pal_ybgF tol-pal 99.2 3.8E-10 8.2E-15 90.8 13.9 106 334-439 2-113 (119)
137 TIGR02795 tol_pal_ybgF tol-pal 99.2 4.9E-10 1.1E-14 90.2 14.2 105 48-152 2-112 (119)
138 KOG1941 Acetylcholine receptor 99.2 4.2E-09 9E-14 94.4 20.5 231 226-458 84-351 (518)
139 COG4785 NlpI Lipoprotein NlpI, 99.2 1.6E-09 3.4E-14 89.9 16.4 196 156-363 64-266 (297)
140 KOG2053 Mitochondrial inherita 99.2 2.2E-06 4.7E-11 86.5 41.0 200 51-258 12-259 (932)
141 CHL00033 ycf3 photosystem I as 99.2 1E-09 2.3E-14 93.9 15.7 123 59-181 10-137 (168)
142 COG4235 Cytochrome c biogenesi 99.2 1.1E-09 2.3E-14 97.2 15.7 122 316-437 138-262 (287)
143 PF14938 SNAP: Soluble NSF att 99.2 7.6E-10 1.7E-14 103.1 15.8 174 123-298 42-228 (282)
144 COG3898 Uncharacterized membra 99.2 4.1E-07 8.9E-12 82.8 31.9 301 122-436 90-396 (531)
145 PF13414 TPR_11: TPR repeat; P 99.2 1.5E-10 3.3E-15 82.3 8.4 67 367-433 2-69 (69)
146 PRK10803 tol-pal system protei 99.1 4.2E-09 9.2E-14 95.4 18.0 108 45-152 139-253 (263)
147 COG4235 Cytochrome c biogenesi 99.1 2.4E-09 5.2E-14 95.0 15.8 123 280-402 136-261 (287)
148 cd00189 TPR Tetratricopeptide 99.1 8.9E-10 1.9E-14 84.9 11.8 99 336-434 2-100 (100)
149 CHL00033 ycf3 photosystem I as 99.1 1.9E-09 4.2E-14 92.2 14.9 104 334-437 35-155 (168)
150 KOG1070 rRNA processing protei 99.1 7.4E-08 1.6E-12 100.8 28.0 223 208-434 1441-1666(1710)
151 PF09976 TPR_21: Tetratricopep 99.1 5.9E-09 1.3E-13 86.6 16.8 117 312-429 23-145 (145)
152 PRK02603 photosystem I assembl 99.1 2.4E-09 5.1E-14 92.0 14.5 119 298-436 33-154 (172)
153 KOG3081 Vesicle coat complex C 99.1 9.3E-08 2E-12 82.5 23.7 169 191-369 108-277 (299)
154 PF13414 TPR_11: TPR repeat; P 99.1 3.9E-10 8.5E-15 80.2 7.9 67 333-399 2-69 (69)
155 PRK15331 chaperone protein Sic 99.1 2.4E-09 5.3E-14 86.4 12.8 107 43-150 32-138 (165)
156 KOG2300 Uncharacterized conser 99.1 8.4E-06 1.8E-10 76.6 37.2 385 48-438 7-521 (629)
157 COG4785 NlpI Lipoprotein NlpI, 99.1 3.2E-08 6.9E-13 82.4 19.1 203 81-295 64-266 (297)
158 PF13432 TPR_16: Tetratricopep 99.1 5.4E-10 1.2E-14 78.3 7.7 65 52-116 1-65 (65)
159 PF09976 TPR_21: Tetratricopep 99.1 9.8E-09 2.1E-13 85.2 16.5 129 48-184 11-145 (145)
160 PF12895 Apc3: Anaphase-promot 99.1 3.8E-10 8.2E-15 83.7 7.2 82 60-142 1-84 (84)
161 PRK15331 chaperone protein Sic 99.1 1.8E-09 3.9E-14 87.2 11.3 108 330-438 33-140 (165)
162 COG4105 ComL DNA uptake lipopr 99.1 1.5E-07 3.2E-12 81.8 23.7 191 44-258 30-237 (254)
163 COG0457 NrfG FOG: TPR repeat [ 99.1 1.4E-06 3.1E-11 80.3 33.1 203 160-400 62-268 (291)
164 cd00189 TPR Tetratricopeptide 99.1 2.1E-09 4.6E-14 82.7 11.6 99 50-148 2-100 (100)
165 PRK10153 DNA-binding transcrip 99.1 9.6E-09 2.1E-13 102.7 18.7 143 295-438 332-489 (517)
166 PF13432 TPR_16: Tetratricopep 99.1 7E-10 1.5E-14 77.7 7.7 64 373-436 2-65 (65)
167 COG0457 NrfG FOG: TPR repeat [ 99.1 7.1E-07 1.5E-11 82.4 30.6 224 204-434 36-268 (291)
168 PRK02603 photosystem I assembl 99.1 7.2E-09 1.6E-13 89.0 15.3 118 80-224 33-153 (172)
169 PRK11906 transcriptional regul 99.1 1.9E-08 4.1E-13 95.1 19.1 160 50-216 257-432 (458)
170 COG1729 Uncharacterized protei 99.0 2.2E-08 4.9E-13 87.8 17.9 106 47-152 140-251 (262)
171 KOG4648 Uncharacterized conser 99.0 1.8E-10 3.9E-15 102.1 4.7 198 51-258 100-300 (536)
172 PF12895 Apc3: Anaphase-promot 99.0 7E-10 1.5E-14 82.3 7.2 81 347-428 2-84 (84)
173 KOG0543 FKBP-type peptidyl-pro 99.0 8.1E-09 1.7E-13 95.0 15.4 128 304-431 212-355 (397)
174 KOG3081 Vesicle coat complex C 99.0 3.2E-07 7E-12 79.3 24.0 257 166-438 17-278 (299)
175 KOG1070 rRNA processing protei 99.0 2E-07 4.2E-12 97.8 26.6 218 173-398 1440-1664(1710)
176 KOG2471 TPR repeat-containing 99.0 8.7E-07 1.9E-11 83.0 27.6 263 170-433 219-650 (696)
177 PRK10153 DNA-binding transcrip 99.0 2E-08 4.3E-13 100.5 18.4 144 75-226 330-488 (517)
178 KOG0543 FKBP-type peptidyl-pro 99.0 1.4E-08 3E-13 93.5 15.3 131 49-186 209-355 (397)
179 PRK11906 transcriptional regul 99.0 3.1E-08 6.7E-13 93.7 17.7 147 281-427 273-432 (458)
180 PRK10803 tol-pal system protei 99.0 1.5E-08 3.3E-13 91.8 15.1 106 334-439 142-254 (263)
181 KOG3617 WD40 and TPR repeat-co 99.0 8.8E-07 1.9E-11 88.1 27.8 184 50-253 759-995 (1416)
182 COG3898 Uncharacterized membra 99.0 5.5E-06 1.2E-10 75.7 30.6 290 50-361 86-390 (531)
183 KOG4648 Uncharacterized conser 98.9 1E-09 2.2E-14 97.5 4.8 239 160-439 100-338 (536)
184 KOG2300 Uncharacterized conser 98.9 5.5E-05 1.2E-09 71.3 36.2 348 82-432 7-475 (629)
185 PF13512 TPR_18: Tetratricopep 98.9 6.1E-08 1.3E-12 76.7 13.6 108 45-152 7-135 (142)
186 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 6.1E-08 1.3E-12 92.5 16.0 121 305-428 174-294 (395)
187 KOG2471 TPR repeat-containing 98.9 1.1E-06 2.5E-11 82.3 23.3 158 46-203 204-381 (696)
188 PF14559 TPR_19: Tetratricopep 98.9 7E-09 1.5E-13 73.4 7.2 67 58-124 1-67 (68)
189 KOG1914 mRNA cleavage and poly 98.9 9.8E-05 2.1E-09 70.7 40.5 397 43-442 15-477 (656)
190 KOG4234 TPR repeat-containing 98.9 5.3E-08 1.2E-12 80.0 12.5 107 49-155 96-207 (271)
191 COG4105 ComL DNA uptake lipopr 98.9 1.9E-06 4.1E-11 75.1 22.3 173 81-274 33-219 (254)
192 PF12688 TPR_5: Tetratrico pep 98.8 1.9E-07 4.1E-12 73.0 14.1 99 117-219 2-103 (120)
193 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.1E-07 2.3E-12 90.8 15.3 115 277-394 180-294 (395)
194 PF12688 TPR_5: Tetratrico pep 98.8 1.6E-07 3.4E-12 73.4 13.2 94 336-429 3-102 (120)
195 KOG2053 Mitochondrial inherita 98.8 2.9E-05 6.2E-10 78.7 31.6 227 93-333 20-259 (932)
196 KOG4234 TPR repeat-containing 98.8 1.2E-07 2.6E-12 77.9 12.1 103 339-441 100-207 (271)
197 KOG1914 mRNA cleavage and poly 98.8 0.0002 4.2E-09 68.8 36.9 374 72-453 10-452 (656)
198 COG1729 Uncharacterized protei 98.8 1.6E-07 3.5E-12 82.5 13.5 105 337-441 144-254 (262)
199 COG4700 Uncharacterized protei 98.8 1.9E-06 4.1E-11 70.2 18.3 148 281-430 71-221 (251)
200 PF14559 TPR_19: Tetratricopep 98.8 2.8E-08 6E-13 70.3 6.8 55 348-402 5-59 (68)
201 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 5.5E-08 1.2E-12 91.9 10.0 68 330-397 71-141 (453)
202 PF13371 TPR_9: Tetratricopept 98.7 7.5E-08 1.6E-12 69.2 8.5 69 55-123 2-70 (73)
203 PF13371 TPR_9: Tetratricopept 98.7 1.2E-07 2.6E-12 68.2 8.4 63 376-438 3-65 (73)
204 KOG1586 Protein required for f 98.7 1.3E-05 2.8E-10 68.1 21.3 189 96-300 28-229 (288)
205 PF13512 TPR_18: Tetratricopep 98.6 1.4E-06 3.1E-11 69.1 13.8 121 300-439 10-136 (142)
206 PF07079 DUF1347: Protein of u 98.6 0.00056 1.2E-08 64.4 40.4 373 51-428 9-521 (549)
207 KOG2796 Uncharacterized conser 98.6 3.5E-05 7.7E-10 66.7 22.1 227 190-436 68-320 (366)
208 KOG1586 Protein required for f 98.6 8.9E-06 1.9E-10 69.0 17.9 130 315-444 88-237 (288)
209 KOG2796 Uncharacterized conser 98.6 0.00013 2.9E-09 63.2 25.2 230 163-412 75-333 (366)
210 KOG4507 Uncharacterized conser 98.6 8.9E-06 1.9E-10 78.2 20.1 104 341-444 614-718 (886)
211 KOG4555 TPR repeat-containing 98.6 1.6E-06 3.5E-11 66.0 12.1 99 337-435 46-148 (175)
212 KOG4555 TPR repeat-containing 98.6 4.6E-06 1E-10 63.6 14.5 101 48-148 43-147 (175)
213 COG4700 Uncharacterized protei 98.6 3.4E-05 7.4E-10 63.1 19.8 147 97-252 71-220 (251)
214 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 8.2E-07 1.8E-11 84.1 11.6 72 40-111 67-141 (453)
215 PF13424 TPR_12: Tetratricopep 98.5 1.5E-07 3.2E-12 68.7 4.9 64 368-431 5-75 (78)
216 KOG4642 Chaperone-dependent E3 98.5 4.7E-07 1E-11 76.8 8.0 102 44-145 6-107 (284)
217 KOG3616 Selective LIM binding 98.5 0.00029 6.4E-09 69.9 28.1 262 157-435 661-1028(1636)
218 PF13424 TPR_12: Tetratricopep 98.5 3E-07 6.5E-12 67.0 5.7 74 113-186 2-75 (78)
219 KOG1585 Protein required for f 98.4 9E-05 2E-09 63.6 20.0 169 159-363 33-219 (308)
220 PF10300 DUF3808: Protein of u 98.4 0.00049 1.1E-08 68.9 28.4 120 314-433 247-378 (468)
221 PF06552 TOM20_plant: Plant sp 98.4 2.2E-06 4.7E-11 70.2 9.4 100 316-442 7-120 (186)
222 KOG1585 Protein required for f 98.4 6E-05 1.3E-09 64.6 18.1 200 228-460 34-249 (308)
223 KOG1258 mRNA processing protei 98.4 0.0028 6E-08 62.3 35.5 345 63-423 60-421 (577)
224 PF10300 DUF3808: Protein of u 98.4 0.001 2.2E-08 66.7 29.7 150 304-454 192-356 (468)
225 KOG3616 Selective LIM binding 98.4 0.0039 8.4E-08 62.4 31.6 48 58-106 454-501 (1636)
226 PF06552 TOM20_plant: Plant sp 98.3 8.6E-06 1.9E-10 66.8 11.0 94 133-226 8-115 (186)
227 PF08631 SPO22: Meiosis protei 98.3 0.0025 5.5E-08 59.3 28.7 131 126-256 3-152 (278)
228 PF04184 ST7: ST7 protein; In 98.3 0.00022 4.7E-09 68.2 21.1 190 53-260 173-381 (539)
229 PF02259 FAT: FAT domain; Int 98.3 0.0017 3.7E-08 63.4 28.0 296 54-366 4-341 (352)
230 KOG0985 Vesicle coat protein c 98.3 0.0043 9.4E-08 64.4 30.2 320 46-414 982-1325(1666)
231 KOG2610 Uncharacterized conser 98.2 0.00011 2.4E-09 66.1 16.7 150 279-428 116-273 (491)
232 KOG4642 Chaperone-dependent E3 98.2 3.5E-06 7.6E-11 71.7 6.7 89 307-395 17-105 (284)
233 PF05843 Suf: Suppressor of fo 98.2 3.7E-05 8.1E-10 71.4 14.3 135 302-436 3-141 (280)
234 KOG0545 Aryl-hydrocarbon recep 98.2 3.9E-05 8.5E-10 65.7 12.3 111 42-152 172-300 (329)
235 PF13281 DUF4071: Domain of un 98.2 0.001 2.2E-08 62.9 22.6 125 190-315 140-274 (374)
236 PF10345 Cohesin_load: Cohesin 98.2 0.015 3.3E-07 60.9 35.7 317 65-384 38-465 (608)
237 KOG1550 Extracellular protein 98.2 0.0036 7.8E-08 64.4 28.5 177 63-254 227-426 (552)
238 PF02259 FAT: FAT domain; Int 98.1 0.0036 7.8E-08 61.1 27.6 261 165-434 6-341 (352)
239 PF13428 TPR_14: Tetratricopep 98.1 6.8E-06 1.5E-10 51.7 5.3 40 370-409 3-42 (44)
240 PF05843 Suf: Suppressor of fo 98.1 0.00012 2.6E-09 68.1 15.7 136 50-189 3-139 (280)
241 KOG4507 Uncharacterized conser 98.1 0.00059 1.3E-08 66.2 20.2 108 306-413 613-721 (886)
242 KOG2610 Uncharacterized conser 98.1 0.00046 1E-08 62.2 18.1 166 83-252 104-274 (491)
243 PF13428 TPR_14: Tetratricopep 98.1 8.4E-06 1.8E-10 51.2 5.1 40 84-123 3-42 (44)
244 KOG0545 Aryl-hydrocarbon recep 98.1 7.1E-05 1.5E-09 64.1 11.9 74 368-441 230-303 (329)
245 PF10345 Cohesin_load: Cohesin 98.1 0.023 4.9E-07 59.7 42.3 409 46-459 57-598 (608)
246 KOG1550 Extracellular protein 98.1 0.0065 1.4E-07 62.5 28.2 82 349-435 454-542 (552)
247 COG2909 MalT ATP-dependent tra 98.0 0.023 5.1E-07 58.7 31.4 298 116-427 347-684 (894)
248 KOG0985 Vesicle coat protein c 98.0 0.019 4.2E-07 59.8 29.7 239 47-320 1103-1374(1666)
249 KOG0376 Serine-threonine phosp 98.0 1.1E-05 2.3E-10 76.5 6.6 108 48-155 4-111 (476)
250 PF04184 ST7: ST7 protein; In 98.0 0.00088 1.9E-08 64.2 18.8 104 336-439 261-383 (539)
251 PF13431 TPR_17: Tetratricopep 98.0 7.1E-06 1.5E-10 47.8 3.3 32 391-422 2-33 (34)
252 KOG0551 Hsp90 co-chaperone CNS 98.0 8.2E-05 1.8E-09 66.8 11.1 102 47-148 80-185 (390)
253 PF08631 SPO22: Meiosis protei 98.0 0.015 3.3E-07 54.1 27.4 129 94-222 5-152 (278)
254 COG3118 Thioredoxin domain-con 98.0 0.00073 1.6E-08 60.4 16.2 70 181-250 226-297 (304)
255 PF00515 TPR_1: Tetratricopept 97.9 2E-05 4.4E-10 46.3 4.4 32 403-434 2-33 (34)
256 COG3118 Thioredoxin domain-con 97.9 0.0035 7.5E-08 56.2 19.7 58 50-107 136-193 (304)
257 PF13281 DUF4071: Domain of un 97.9 0.0062 1.3E-07 57.7 22.6 178 81-259 140-339 (374)
258 PF13431 TPR_17: Tetratricopep 97.9 1E-05 2.2E-10 47.2 2.7 32 357-388 2-33 (34)
259 KOG0376 Serine-threonine phosp 97.9 1.5E-05 3.2E-10 75.5 5.3 131 303-438 7-137 (476)
260 PF07719 TPR_2: Tetratricopept 97.9 3.4E-05 7.4E-10 45.4 5.0 33 403-435 2-34 (34)
261 KOG0530 Protein farnesyltransf 97.9 0.0074 1.6E-07 52.8 20.3 192 96-312 40-233 (318)
262 KOG0890 Protein kinase of the 97.8 0.051 1.1E-06 62.3 31.0 108 332-441 1668-1794(2382)
263 KOG0890 Protein kinase of the 97.8 0.03 6.5E-07 64.0 29.1 133 241-375 1645-1796(2382)
264 KOG0530 Protein farnesyltransf 97.8 0.0095 2.1E-07 52.2 19.9 199 47-252 41-251 (318)
265 PRK13184 pknD serine/threonine 97.7 0.1 2.2E-06 56.3 31.7 114 52-166 479-602 (932)
266 KOG1308 Hsp70-interacting prot 97.7 4.5E-05 9.8E-10 68.9 5.1 98 51-148 117-214 (377)
267 COG2976 Uncharacterized protei 97.7 0.0037 8E-08 52.3 15.6 118 318-436 70-193 (207)
268 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00055 1.2E-08 61.7 11.3 102 156-257 80-185 (390)
269 PF00515 TPR_1: Tetratricopept 97.7 9.8E-05 2.1E-09 43.3 4.6 32 369-400 2-33 (34)
270 PF07079 DUF1347: Protein of u 97.7 0.058 1.2E-06 51.4 33.5 339 50-394 47-521 (549)
271 COG2909 MalT ATP-dependent tra 97.6 0.11 2.4E-06 54.0 34.7 304 82-394 347-685 (894)
272 PF07719 TPR_2: Tetratricopept 97.6 0.00015 3.2E-09 42.6 4.9 32 369-400 2-33 (34)
273 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.064 1.4E-06 51.0 34.3 380 43-434 37-534 (660)
274 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.07 1.5E-06 50.7 32.2 359 70-433 30-497 (660)
275 PF03704 BTAD: Bacterial trans 97.6 0.0029 6.2E-08 52.6 13.9 62 369-430 63-124 (146)
276 PF03704 BTAD: Bacterial trans 97.6 0.0029 6.2E-08 52.6 13.7 95 50-144 8-124 (146)
277 KOG2396 HAT (Half-A-TPR) repea 97.5 0.093 2E-06 50.7 36.4 76 47-122 104-180 (568)
278 KOG1308 Hsp70-interacting prot 97.5 0.00012 2.7E-09 66.2 4.6 88 311-398 125-212 (377)
279 PF13181 TPR_8: Tetratricopept 97.5 0.0002 4.4E-09 42.0 4.1 32 403-434 2-33 (34)
280 COG0790 FOG: TPR repeat, SEL1 97.5 0.059 1.3E-06 50.9 22.9 128 282-416 93-236 (292)
281 PF08424 NRDE-2: NRDE-2, neces 97.4 0.018 3.8E-07 54.8 18.4 114 69-186 6-131 (321)
282 COG2976 Uncharacterized protei 97.4 0.049 1.1E-06 45.8 18.3 120 134-258 70-192 (207)
283 PF08424 NRDE-2: NRDE-2, neces 97.4 0.022 4.8E-07 54.2 19.0 136 172-330 46-184 (321)
284 COG0790 FOG: TPR repeat, SEL1 97.4 0.12 2.5E-06 48.9 24.0 187 56-257 49-269 (292)
285 KOG1258 mRNA processing protei 97.4 0.18 3.9E-06 50.1 40.4 384 50-450 81-489 (577)
286 KOG3824 Huntingtin interacting 97.2 0.0013 2.8E-08 58.6 7.3 77 48-124 116-192 (472)
287 KOG3783 Uncharacterized conser 97.2 0.18 3.9E-06 49.5 22.0 298 124-435 198-524 (546)
288 PF04781 DUF627: Protein of un 97.2 0.0039 8.5E-08 47.0 8.5 92 54-145 2-107 (111)
289 PF04910 Tcf25: Transcriptiona 97.1 0.031 6.8E-07 53.8 16.9 75 74-148 32-135 (360)
290 KOG3783 Uncharacterized conser 97.1 0.14 3.1E-06 50.1 20.7 95 99-198 250-344 (546)
291 PF13176 TPR_7: Tetratricopept 97.1 0.00048 1E-08 40.9 2.7 27 405-431 2-28 (36)
292 PF13181 TPR_8: Tetratricopept 97.1 0.0011 2.4E-08 38.8 4.1 30 370-399 3-32 (34)
293 PF04910 Tcf25: Transcriptiona 97.1 0.036 7.8E-07 53.4 16.5 144 292-435 32-226 (360)
294 KOG0128 RNA-binding protein SA 97.1 0.49 1.1E-05 49.0 33.1 369 61-431 92-526 (881)
295 PF09613 HrpB1_HrpK: Bacterial 97.1 0.062 1.3E-06 44.0 15.1 100 47-147 9-108 (160)
296 KOG2041 WD40 repeat protein [G 97.1 0.43 9.4E-06 48.2 26.8 139 57-217 672-822 (1189)
297 PF13174 TPR_6: Tetratricopept 97.0 0.0012 2.7E-08 38.2 4.0 31 404-434 2-32 (33)
298 KOG3824 Huntingtin interacting 97.0 0.0029 6.3E-08 56.5 7.3 64 379-442 127-190 (472)
299 PRK15180 Vi polysaccharide bio 96.9 0.0051 1.1E-07 58.5 9.0 142 312-453 301-442 (831)
300 PF13174 TPR_6: Tetratricopept 96.8 0.0024 5.3E-08 36.9 4.1 29 85-113 3-31 (33)
301 KOG1464 COP9 signalosome, subu 96.8 0.12 2.5E-06 45.8 15.7 197 60-259 39-265 (440)
302 KOG1463 26S proteasome regulat 96.8 0.42 9E-06 44.0 22.0 205 51-256 7-240 (411)
303 PF14561 TPR_20: Tetratricopep 96.8 0.022 4.7E-07 42.1 9.5 67 67-133 7-75 (90)
304 KOG1464 COP9 signalosome, subu 96.8 0.13 2.7E-06 45.6 15.5 213 95-314 40-286 (440)
305 KOG2041 WD40 repeat protein [G 96.8 0.32 6.8E-06 49.1 19.9 253 98-394 679-936 (1189)
306 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.0057 1.2E-07 39.6 5.0 37 403-439 2-38 (53)
307 PF04781 DUF627: Protein of un 96.6 0.022 4.8E-07 43.1 8.7 28 307-334 3-30 (111)
308 PRK15180 Vi polysaccharide bio 96.6 0.77 1.7E-05 44.4 30.8 135 47-188 288-422 (831)
309 PF13176 TPR_7: Tetratricopept 96.5 0.0054 1.2E-07 36.3 4.2 28 370-397 1-28 (36)
310 PF09613 HrpB1_HrpK: Bacterial 96.5 0.059 1.3E-06 44.1 11.2 97 336-433 12-108 (160)
311 TIGR02561 HrpB1_HrpK type III 96.5 0.2 4.3E-06 40.3 13.8 86 48-133 10-95 (153)
312 PRK10941 hypothetical protein; 96.5 0.049 1.1E-06 49.7 12.0 67 195-261 185-251 (269)
313 PRK10941 hypothetical protein; 96.5 0.02 4.3E-07 52.2 9.5 70 370-439 183-252 (269)
314 COG3914 Spy Predicted O-linked 96.5 0.15 3.2E-06 50.5 15.5 133 313-445 44-185 (620)
315 PF14853 Fis1_TPR_C: Fis1 C-te 96.4 0.019 4E-07 37.2 6.3 33 85-117 4-36 (53)
316 KOG1463 26S proteasome regulat 96.3 0.84 1.8E-05 42.1 23.9 208 86-295 8-238 (411)
317 PF09986 DUF2225: Uncharacteri 96.3 0.05 1.1E-06 47.9 10.8 92 130-221 91-195 (214)
318 PF14561 TPR_20: Tetratricopep 96.3 0.051 1.1E-06 40.2 8.9 66 388-453 8-75 (90)
319 PRK11619 lytic murein transgly 96.3 1.9 4.1E-05 45.4 33.6 145 48-208 33-180 (644)
320 COG4976 Predicted methyltransf 96.2 0.0096 2.1E-07 51.0 5.3 66 376-441 3-68 (287)
321 PF12968 DUF3856: Domain of Un 96.1 0.12 2.7E-06 39.3 10.2 86 346-431 21-129 (144)
322 KOG1310 WD40 repeat protein [G 96.1 0.035 7.6E-07 53.7 9.0 105 46-150 372-479 (758)
323 COG5159 RPN6 26S proteasome re 96.1 1 2.2E-05 40.5 25.7 216 52-296 7-236 (421)
324 smart00028 TPR Tetratricopepti 96.1 0.01 2.2E-07 33.8 3.7 31 404-434 3-33 (34)
325 COG4649 Uncharacterized protei 96.0 0.71 1.5E-05 38.2 16.9 147 48-201 58-210 (221)
326 PF12968 DUF3856: Domain of Un 96.0 0.34 7.4E-06 37.0 11.8 95 51-145 12-129 (144)
327 KOG2396 HAT (Half-A-TPR) repea 96.0 1.8 3.9E-05 42.4 33.0 105 330-434 456-563 (568)
328 PRK13184 pknD serine/threonine 95.9 3.3 7.1E-05 45.2 26.9 135 123-258 482-624 (932)
329 KOG1538 Uncharacterized conser 95.9 0.81 1.8E-05 46.0 17.2 63 45-107 582-657 (1081)
330 PF09986 DUF2225: Uncharacteri 95.7 0.11 2.4E-06 45.8 10.1 29 335-363 166-194 (214)
331 KOG3364 Membrane protein invol 95.7 0.13 2.8E-06 40.4 9.0 73 367-439 31-108 (149)
332 TIGR02561 HrpB1_HrpK type III 95.6 0.22 4.9E-06 40.0 10.3 77 342-418 18-94 (153)
333 PF10602 RPN7: 26S proteasome 95.6 0.19 4.1E-06 42.9 10.8 102 191-293 36-140 (177)
334 COG4649 Uncharacterized protei 95.6 1.1 2.3E-05 37.1 16.1 132 309-441 67-205 (221)
335 KOG1538 Uncharacterized conser 95.6 2.8 6E-05 42.4 19.5 240 56-326 564-830 (1081)
336 KOG1839 Uncharacterized protei 95.6 0.13 2.8E-06 55.9 11.5 163 269-431 935-1128(1236)
337 PF10602 RPN7: 26S proteasome 95.5 0.3 6.5E-06 41.7 11.8 103 83-186 37-142 (177)
338 smart00028 TPR Tetratricopepti 95.5 0.026 5.7E-07 32.0 3.9 29 85-113 4-32 (34)
339 KOG3364 Membrane protein invol 95.5 0.42 9E-06 37.6 11.0 74 334-407 32-110 (149)
340 COG4976 Predicted methyltransf 95.5 0.027 6E-07 48.3 5.1 59 92-150 5-63 (287)
341 PRK11619 lytic murein transgly 95.5 4.1 9E-05 42.9 40.5 339 70-428 84-465 (644)
342 KOG1839 Uncharacterized protei 95.2 0.27 5.9E-06 53.6 12.6 137 46-186 930-1086(1236)
343 KOG1310 WD40 repeat protein [G 95.1 0.066 1.4E-06 51.9 6.9 83 351-433 391-476 (758)
344 PF10579 Rapsyn_N: Rapsyn N-te 94.9 0.32 6.9E-06 34.2 8.0 64 47-110 5-71 (80)
345 KOG2422 Uncharacterized conser 94.7 3.1 6.7E-05 41.5 17.0 102 61-162 251-389 (665)
346 PF13374 TPR_10: Tetratricopep 94.6 0.092 2E-06 32.1 4.5 29 403-431 3-31 (42)
347 KOG4814 Uncharacterized conser 94.6 5.4 0.00012 40.4 18.2 101 119-220 357-457 (872)
348 COG5191 Uncharacterized conser 94.5 0.068 1.5E-06 48.2 5.1 82 325-406 98-180 (435)
349 COG1747 Uncharacterized N-term 94.5 5.4 0.00012 39.3 22.0 168 171-344 80-249 (711)
350 KOG2422 Uncharacterized conser 94.4 3.3 7.1E-05 41.4 16.2 156 170-332 251-451 (665)
351 KOG0529 Protein geranylgeranyl 94.3 5.1 0.00011 38.4 17.6 162 281-442 44-235 (421)
352 PF13374 TPR_10: Tetratricopep 94.1 0.12 2.7E-06 31.5 4.4 29 369-397 3-31 (42)
353 PF04053 Coatomer_WDAD: Coatom 94.1 2.9 6.2E-05 41.7 16.0 167 47-251 260-428 (443)
354 KOG0529 Protein geranylgeranyl 93.9 2.9 6.4E-05 39.9 14.4 132 281-412 90-239 (421)
355 KOG0128 RNA-binding protein SA 93.8 10 0.00022 39.8 35.9 382 46-428 111-560 (881)
356 COG2912 Uncharacterized conser 93.6 0.68 1.5E-05 41.7 9.5 68 195-262 185-252 (269)
357 COG5191 Uncharacterized conser 93.5 0.18 4E-06 45.6 5.8 88 288-375 95-183 (435)
358 KOG2063 Vacuolar assembly/sort 93.2 14 0.00031 39.9 19.7 112 160-271 507-638 (877)
359 COG1747 Uncharacterized N-term 93.1 10 0.00022 37.6 22.1 96 47-145 65-160 (711)
360 COG5159 RPN6 26S proteasome re 92.9 7 0.00015 35.4 21.1 209 120-329 7-235 (421)
361 PF09670 Cas_Cas02710: CRISPR- 92.9 4.1 8.8E-05 39.9 14.6 63 49-111 132-198 (379)
362 PF12862 Apc5: Anaphase-promot 92.7 0.74 1.6E-05 34.5 7.4 61 126-186 8-70 (94)
363 PF07720 TPR_3: Tetratricopept 92.7 0.49 1.1E-05 27.8 4.9 31 404-434 3-35 (36)
364 PF04190 DUF410: Protein of un 92.6 8.3 0.00018 35.4 18.8 34 221-254 136-170 (260)
365 COG3629 DnrI DNA-binding trans 92.5 1.4 3E-05 40.4 10.0 64 82-145 153-216 (280)
366 PF04190 DUF410: Protein of un 92.4 8.8 0.00019 35.3 17.9 26 298-323 88-113 (260)
367 COG2912 Uncharacterized conser 92.3 0.63 1.4E-05 41.9 7.4 68 371-438 184-251 (269)
368 PF07721 TPR_4: Tetratricopept 92.2 0.22 4.7E-06 26.7 2.8 23 404-426 3-25 (26)
369 PF15015 NYD-SP12_N: Spermatog 92.1 2 4.3E-05 41.0 10.6 96 122-217 182-288 (569)
370 PF15015 NYD-SP12_N: Spermatog 92.0 1.3 2.8E-05 42.2 9.2 97 46-142 170-288 (569)
371 KOG2114 Vacuolar assembly/sort 91.9 7.4 0.00016 40.9 15.1 114 124-250 342-456 (933)
372 COG3629 DnrI DNA-binding trans 91.9 1.1 2.3E-05 41.0 8.6 64 48-111 153-216 (280)
373 PF12862 Apc5: Anaphase-promot 91.8 0.76 1.6E-05 34.5 6.5 56 380-435 10-74 (94)
374 PF04053 Coatomer_WDAD: Coatom 91.6 12 0.00027 37.3 16.4 99 279-394 274-373 (443)
375 KOG3807 Predicted membrane pro 91.6 11 0.00025 34.8 19.1 144 86-248 188-334 (556)
376 PF07720 TPR_3: Tetratricopept 91.5 0.78 1.7E-05 26.9 4.8 21 50-70 3-23 (36)
377 PF00244 14-3-3: 14-3-3 protei 91.4 11 0.00023 34.1 16.0 64 49-112 2-67 (236)
378 PF10579 Rapsyn_N: Rapsyn N-te 91.4 2 4.4E-05 30.3 7.5 62 84-145 8-72 (80)
379 KOG2581 26S proteasome regulat 91.4 14 0.0003 35.5 16.9 201 57-259 39-281 (493)
380 KOG3807 Predicted membrane pro 91.2 13 0.00027 34.6 18.1 60 50-111 186-245 (556)
381 PF07721 TPR_4: Tetratricopept 91.2 0.34 7.3E-06 26.0 2.9 22 370-391 3-24 (26)
382 PF11207 DUF2989: Protein of u 90.9 3.8 8.2E-05 35.3 10.3 71 351-422 123-198 (203)
383 KOG2581 26S proteasome regulat 90.8 16 0.00034 35.1 19.1 141 47-190 123-280 (493)
384 COG4941 Predicted RNA polymera 90.6 15 0.00032 34.4 16.1 158 281-439 211-402 (415)
385 KOG2063 Vacuolar assembly/sort 90.4 18 0.0004 39.1 16.9 106 193-298 506-623 (877)
386 PF14863 Alkyl_sulf_dimr: Alky 90.3 1.1 2.4E-05 36.3 6.4 53 46-98 68-120 (141)
387 PF10516 SHNi-TPR: SHNi-TPR; 90.0 0.72 1.6E-05 27.4 3.8 26 371-396 4-29 (38)
388 PF11207 DUF2989: Protein of u 89.9 5.1 0.00011 34.5 10.2 73 172-245 121-198 (203)
389 PF10516 SHNi-TPR: SHNi-TPR; 89.7 0.64 1.4E-05 27.6 3.4 30 403-432 2-31 (38)
390 PF12739 TRAPPC-Trs85: ER-Golg 89.6 21 0.00045 35.6 16.1 54 118-172 210-263 (414)
391 KOG4814 Uncharacterized conser 88.7 31 0.00067 35.4 31.7 98 49-146 355-458 (872)
392 PF12739 TRAPPC-Trs85: ER-Golg 88.4 29 0.00063 34.6 18.6 168 46-222 205-401 (414)
393 smart00299 CLH Clathrin heavy 88.3 12 0.00027 30.4 12.6 47 202-249 18-64 (140)
394 COG3947 Response regulator con 88.0 2.6 5.6E-05 38.2 7.4 59 371-429 282-340 (361)
395 PF10373 EST1_DNA_bind: Est1 D 87.4 2.1 4.6E-05 39.9 7.4 62 319-380 1-62 (278)
396 PF11817 Foie-gras_1: Foie gra 87.1 20 0.00044 32.7 13.2 59 302-360 180-244 (247)
397 PF10373 EST1_DNA_bind: Est1 D 87.0 2.8 6.1E-05 39.1 7.9 62 285-346 1-62 (278)
398 COG4941 Predicted RNA polymera 86.9 27 0.00059 32.7 16.4 161 98-261 212-401 (415)
399 PF10255 Paf67: RNA polymerase 86.7 34 0.00073 33.6 14.8 61 302-362 124-192 (404)
400 PF04097 Nic96: Nup93/Nic96; 86.5 47 0.001 35.1 18.1 158 87-250 263-439 (613)
401 PF11817 Foie-gras_1: Foie gra 86.5 26 0.00056 32.0 14.2 27 160-186 13-39 (247)
402 TIGR03504 FimV_Cterm FimV C-te 86.3 1.9 4.1E-05 26.7 4.1 25 406-430 3-27 (44)
403 PF00244 14-3-3: 14-3-3 protei 86.2 17 0.00038 32.8 12.0 30 194-223 4-33 (236)
404 COG4455 ImpE Protein of avirul 85.9 6.4 0.00014 34.2 8.4 58 92-149 11-68 (273)
405 COG3947 Response regulator con 85.8 4 8.7E-05 37.1 7.4 61 84-144 281-341 (361)
406 KOG0276 Vesicle coat complex C 85.6 20 0.00043 36.4 12.6 153 57-251 595-747 (794)
407 KOG0546 HSP90 co-chaperone CPR 85.3 1.6 3.5E-05 40.7 4.9 64 374-437 281-344 (372)
408 TIGR03504 FimV_Cterm FimV C-te 84.8 2.3 5E-05 26.3 4.0 25 52-76 3-27 (44)
409 COG4455 ImpE Protein of avirul 84.8 26 0.00057 30.7 13.4 62 55-116 8-69 (273)
410 smart00386 HAT HAT (Half-A-TPR 84.5 2.7 5.8E-05 23.5 4.2 27 63-89 2-28 (33)
411 PF04348 LppC: LppC putative l 83.3 2.4 5.2E-05 43.6 5.9 259 300-567 24-300 (536)
412 smart00101 14_3_3 14-3-3 homol 82.6 37 0.00081 30.7 14.6 55 196-250 6-64 (244)
413 PF04097 Nic96: Nup93/Nic96; 82.3 72 0.0016 33.8 23.9 28 46-73 109-136 (613)
414 PF09670 Cas_Cas02710: CRISPR- 82.1 54 0.0012 32.2 14.6 64 157-220 131-198 (379)
415 smart00386 HAT HAT (Half-A-TPR 81.4 4.5 9.7E-05 22.5 4.3 22 385-406 4-25 (33)
416 KOG0546 HSP90 co-chaperone CPR 81.4 3.6 7.9E-05 38.5 5.6 83 334-416 275-357 (372)
417 KOG4014 Uncharacterized conser 79.9 36 0.00079 28.8 16.2 96 279-379 48-155 (248)
418 PF10255 Paf67: RNA polymerase 78.8 31 0.00067 33.8 11.2 61 50-110 124-192 (404)
419 PF12854 PPR_1: PPR repeat 78.4 6.8 0.00015 22.5 4.3 25 334-358 7-31 (34)
420 KOG1920 IkappaB kinase complex 77.7 1.3E+02 0.0027 33.9 21.4 109 302-428 941-1052(1265)
421 PF12854 PPR_1: PPR repeat 77.4 6.5 0.00014 22.6 4.0 26 116-141 7-32 (34)
422 KOG0687 26S proteasome regulat 77.0 65 0.0014 30.2 11.9 104 116-221 104-211 (393)
423 TIGR02710 CRISPR-associated pr 76.5 78 0.0017 30.8 13.9 57 51-107 133-196 (380)
424 COG5536 BET4 Protein prenyltra 75.9 60 0.0013 29.7 11.1 158 284-441 50-232 (328)
425 KOG0889 Histone acetyltransfer 75.9 2.4E+02 0.0052 36.1 25.6 45 368-412 2812-2856(3550)
426 PF09205 DUF1955: Domain of un 75.5 23 0.00051 28.2 7.5 52 379-430 97-148 (161)
427 PF11846 DUF3366: Domain of un 75.4 12 0.00026 32.7 7.0 50 384-434 127-176 (193)
428 KOG0276 Vesicle coat complex C 74.4 61 0.0013 33.2 11.9 45 169-218 649-693 (794)
429 KOG4014 Uncharacterized conser 74.0 55 0.0012 27.8 13.6 53 378-432 178-234 (248)
430 KOG1920 IkappaB kinase complex 73.9 1.6E+02 0.0035 33.2 22.1 22 339-360 1004-1025(1265)
431 smart00299 CLH Clathrin heavy 72.7 49 0.0011 26.8 15.8 49 57-106 16-64 (140)
432 PF07163 Pex26: Pex26 protein; 72.3 80 0.0017 29.0 14.5 130 48-180 35-181 (309)
433 PF14863 Alkyl_sulf_dimr: Alky 72.1 13 0.00029 30.2 5.9 44 85-128 73-116 (141)
434 smart00101 14_3_3 14-3-3 homol 71.5 80 0.0017 28.6 18.0 60 49-108 2-65 (244)
435 PF09205 DUF1955: Domain of un 71.3 34 0.00073 27.3 7.5 54 201-254 96-149 (161)
436 cd02682 MIT_AAA_Arch MIT: doma 70.8 24 0.00053 24.9 6.1 29 48-76 6-34 (75)
437 KOG4279 Serine/threonine prote 70.6 58 0.0013 34.2 10.9 119 115-239 200-334 (1226)
438 PF13041 PPR_2: PPR repeat fam 69.5 26 0.00056 22.2 6.2 26 303-328 6-31 (50)
439 PF07219 HemY_N: HemY protein 69.3 26 0.00056 27.0 6.8 28 50-77 61-88 (108)
440 KOG0686 COP9 signalosome, subu 69.2 1.1E+02 0.0025 29.7 11.9 93 160-252 153-256 (466)
441 COG5536 BET4 Protein prenyltra 68.9 95 0.0021 28.5 16.7 185 48-233 31-235 (328)
442 PF13041 PPR_2: PPR repeat fam 68.7 27 0.00058 22.1 6.2 27 193-219 5-31 (50)
443 PF01535 PPR: PPR repeat; Int 66.5 11 0.00023 20.6 3.2 21 197-217 6-26 (31)
444 PF02670 DXP_reductoisom: 1-de 66.1 17 0.00037 29.0 5.2 83 501-588 9-112 (129)
445 KOG0889 Histone acetyltransfer 66.0 3.9E+02 0.0085 34.5 21.9 111 334-444 2736-2854(3550)
446 KOG4279 Serine/threonine prote 64.3 1E+02 0.0022 32.6 11.3 103 46-149 199-320 (1226)
447 KOG2114 Vacuolar assembly/sort 64.3 2.1E+02 0.0046 30.9 26.7 63 48-111 334-397 (933)
448 COG5187 RPN7 26S proteasome re 63.8 1.2E+02 0.0027 27.9 14.2 103 225-328 115-220 (412)
449 PF10952 DUF2753: Protein of u 63.1 33 0.00072 26.8 6.0 26 338-363 5-30 (140)
450 PHA02537 M terminase endonucle 62.6 16 0.00035 32.5 5.0 21 203-223 190-210 (230)
451 PRK15490 Vi polysaccharide bio 62.2 47 0.001 34.3 8.7 82 57-140 17-98 (578)
452 cd02680 MIT_calpain7_2 MIT: do 61.6 16 0.00034 25.9 3.8 17 170-186 19-35 (75)
453 cd02682 MIT_AAA_Arch MIT: doma 61.2 56 0.0012 23.1 6.7 20 164-183 13-32 (75)
454 PHA02537 M terminase endonucle 59.5 16 0.00035 32.5 4.5 94 57-150 92-212 (230)
455 KOG4151 Myosin assembly protei 59.2 50 0.0011 34.9 8.4 104 51-154 56-165 (748)
456 PF13226 DUF4034: Domain of un 58.2 1.3E+02 0.0028 27.9 10.0 102 54-155 6-138 (277)
457 TIGR00756 PPR pentatricopeptid 58.0 27 0.00059 19.4 4.1 26 119-144 3-28 (35)
458 KOG0687 26S proteasome regulat 57.2 1.7E+02 0.0038 27.6 13.1 102 157-258 104-214 (393)
459 TIGR02710 CRISPR-associated pr 56.8 2E+02 0.0044 28.1 13.4 61 122-182 136-196 (380)
460 PF11846 DUF3366: Domain of un 56.5 42 0.00091 29.2 6.7 49 208-257 128-176 (193)
461 PF10952 DUF2753: Protein of u 55.8 79 0.0017 24.9 6.8 70 371-440 4-92 (140)
462 PF04212 MIT: MIT (microtubule 54.9 34 0.00073 23.7 4.7 27 50-76 7-33 (69)
463 KOG0292 Vesicle coat complex C 54.6 3.2E+02 0.007 29.9 13.2 33 47-79 990-1022(1202)
464 KOG4151 Myosin assembly protei 54.4 48 0.001 35.0 7.3 93 309-401 62-160 (748)
465 PF04348 LppC: LppC putative l 54.2 4.2 9.1E-05 41.9 0.0 35 487-524 399-433 (536)
466 cd02679 MIT_spastin MIT: domai 53.6 26 0.00056 25.1 3.9 15 348-362 22-36 (79)
467 cd02679 MIT_spastin MIT: domai 53.3 29 0.00062 24.9 4.0 14 171-184 22-35 (79)
468 cd02681 MIT_calpain7_1 MIT: do 53.1 34 0.00074 24.3 4.4 29 48-76 6-34 (76)
469 PRK15490 Vi polysaccharide bio 53.0 1.5E+02 0.0033 30.8 10.5 80 311-392 19-98 (578)
470 PF13812 PPR_3: Pentatricopept 52.4 40 0.00086 18.7 4.4 25 194-218 4-28 (34)
471 cd02683 MIT_1 MIT: domain cont 52.1 27 0.00059 24.9 3.8 29 48-76 6-34 (77)
472 PF07219 HemY_N: HemY protein 51.2 87 0.0019 24.1 6.9 48 84-131 61-108 (108)
473 TIGR03362 VI_chp_7 type VI sec 50.6 2.2E+02 0.0049 26.9 18.8 159 50-220 101-279 (301)
474 PF03745 DUF309: Domain of unk 50.4 77 0.0017 21.4 8.1 58 121-179 4-61 (62)
475 KOG0686 COP9 signalosome, subu 50.4 2.6E+02 0.0056 27.5 14.2 95 301-395 151-256 (466)
476 cd02683 MIT_1 MIT: domain cont 49.9 92 0.002 22.2 6.6 12 171-182 20-31 (77)
477 KOG4563 Cell cycle-regulated h 49.8 46 0.001 31.6 5.8 59 44-102 37-103 (400)
478 PF06957 COPI_C: Coatomer (COP 48.9 1E+02 0.0022 30.6 8.3 104 48-151 204-335 (422)
479 TIGR03362 VI_chp_7 type VI sec 48.9 2.4E+02 0.0052 26.7 15.5 147 279-433 112-281 (301)
480 PRK12798 chemotaxis protein; R 47.4 2.9E+02 0.0064 27.3 22.2 198 47-249 111-319 (421)
481 PF08311 Mad3_BUB1_I: Mad3/BUB 47.1 1.5E+02 0.0032 23.7 12.6 43 318-360 81-125 (126)
482 PF09477 Type_III_YscG: Bacter 46.7 1.3E+02 0.0029 23.1 11.9 89 50-143 8-96 (116)
483 KOG2561 Adaptor protein NUB1, 46.3 2.2E+02 0.0047 28.1 9.7 47 85-131 166-223 (568)
484 smart00671 SEL1 Sel1-like repe 46.2 49 0.0011 18.7 3.9 14 417-430 20-33 (36)
485 COG3014 Uncharacterized protei 45.4 2.8E+02 0.0061 26.5 13.7 166 67-232 40-254 (449)
486 PF08238 Sel1: Sel1 repeat; I 44.9 59 0.0013 18.8 4.1 13 418-430 24-36 (39)
487 KOG4521 Nuclear pore complex, 44.8 5.2E+02 0.011 29.4 14.0 168 115-289 919-1125(1480)
488 PF04212 MIT: MIT (microtubule 44.7 71 0.0015 22.0 5.0 21 164-184 12-32 (69)
489 PF13226 DUF4034: Domain of un 44.2 2.7E+02 0.0058 25.9 12.0 135 89-242 7-150 (277)
490 KOG2561 Adaptor protein NUB1, 43.9 2.4E+02 0.0051 27.9 9.5 102 153-254 159-296 (568)
491 KOG0567 HEAT repeat-containing 43.6 2.6E+02 0.0057 25.6 14.9 180 87-273 55-248 (289)
492 KOG1938 Protein with predicted 43.3 2.7E+02 0.0058 30.7 10.7 99 121-220 181-287 (960)
493 COG2015 Alkyl sulfatase and re 43.2 64 0.0014 32.0 5.9 53 47-99 451-503 (655)
494 cd02680 MIT_calpain7_2 MIT: do 43.0 47 0.001 23.5 3.8 26 51-76 9-34 (75)
495 PF12753 Nro1: Nuclear pore co 42.4 36 0.00078 32.9 4.1 52 241-294 334-390 (404)
496 cd02677 MIT_SNX15 MIT: domain 41.9 40 0.00086 23.9 3.4 33 384-431 3-35 (75)
497 cd02678 MIT_VPS4 MIT: domain c 41.2 64 0.0014 22.8 4.4 28 49-76 7-34 (75)
498 PF03745 DUF309: Domain of unk 40.1 1.2E+02 0.0025 20.6 7.5 57 230-287 4-60 (62)
499 PF02064 MAS20: MAS20 protein 40.0 80 0.0017 24.9 5.0 37 86-122 67-103 (121)
500 PF02184 HAT: HAT (Half-A-TPR) 40.0 73 0.0016 18.2 3.5 17 384-400 3-19 (32)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-93 Score=657.46 Aligned_cols=564 Identities=38% Similarity=0.539 Sum_probs=516.7
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCcccccccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 007634 13 ERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL 92 (595)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 92 (595)
+..++-..++..+.........+.. .....+.-.+.+-.+|+++..+|++++|+.+|+.++++.|++.++|.++|.++
T Consensus 83 ~~llll~ai~~q~~r~d~s~a~~~~--a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al 160 (966)
T KOG4626|consen 83 ERLLLLSAIFFQGSRLDKSSAGSLL--AIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAAL 160 (966)
T ss_pred cceeeehhhhhcccchhhhhhhhhh--hhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHH
Confidence 3344444555544443333322222 22223345667777999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 007634 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (595)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (595)
...|+.+.|.++|..+++++|+...+...+|.++...|+..+|..+|.++++..|.... +|.++|..+..+|+
T Consensus 161 ~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi-------awsnLg~~f~~~Ge 233 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI-------AWSNLGCVFNAQGE 233 (966)
T ss_pred HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee-------eehhcchHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999997544 48999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
...|+..|+++++++|...++|++||.+|...+.+++|+.+|.+++...|+++.++-++|.+|.++|..+-|+..|++++
T Consensus 234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 007634 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 332 (595)
++.|+.+.++.+++.++... |+..+|..+|.+++.+.|+.+++..+||.++.++|++++|...|.++++..|.
T Consensus 314 ~~~P~F~~Ay~NlanALkd~-------G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~ 386 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDK-------GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE 386 (966)
T ss_pred hcCCCchHHHhHHHHHHHhc-------cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh
Confidence 99999999888888877774 69999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (595)
.+.+..++|.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+...|+..|.+++..+|..++++.+||.+|
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCc-----HHHHHHHHHHH--HHHHhhc-------------
Q 007634 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDWG--KRFMRLY------------- 472 (595)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~------------- 472 (595)
...|+..+|+..|+.++++.|+.+++..|++.++.++..|.. .++...+++|. ++++...
T Consensus 467 kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~ 546 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHIL 546 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHH
Confidence 999999999999999999999999999999999999999987 77788888888 3333322
Q ss_pred ---------------------cccCCCCCCCCCCCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCCh
Q 007634 473 ---------------------SQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADA 531 (595)
Q Consensus 473 ---------------------~~~~~~~~~~~~~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~ 531 (595)
+++..|.+-+.+++||||||||+||.+||++||+.+++.+||+++||||||+.+++++.
T Consensus 547 ~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~t 626 (966)
T KOG4626|consen 547 RKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDGT 626 (966)
T ss_pred HHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecCCCc
Confidence 34556677778889999999999999999999999999999999999999999876554
Q ss_pred hhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEEEeCCCCCCCChhhhhhcCCCCcccC
Q 007634 532 KTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVC 595 (595)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~APvq~~ 595 (595)
. ||.++.++++||+|+++++...+|..|++|+|||||+|+|||.|+|.+|||+|||||||+
T Consensus 627 ~---fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv~ 687 (966)
T KOG4626|consen 627 N---FRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQVM 687 (966)
T ss_pred h---HHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeEE
Confidence 3 777777888999999999999999999999999999999999999999999999999995
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-49 Score=365.31 Aligned_cols=400 Identities=28% Similarity=0.432 Sum_probs=371.1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------------------------------CCHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVEAHIGKGI 90 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------------------~~~~~~~~la~ 90 (595)
.......+++|...++.|+|.+|.+.+..+...+| .-.+++-++|.
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 34456689999999999999999999887666554 33567788999
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh
Q 007634 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170 (595)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~ 170 (595)
++...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|....+ ...+|..+...
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca-------~s~lgnLlka~ 197 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA-------RSDLGNLLKAE 197 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh-------hcchhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999986655 77888889999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
|+..+|..+|.++++..|..+.+|.+||.++..+|+...|+..|+++++++|+..++|+++|.+|...+.++.|+..|.+
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 007634 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (595)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 330 (595)
++.+.|++.. ++.+++.+|..+|..+-|+..|+++++..|..++++.++|..+...|+..+|+.+|.+++.+.
T Consensus 278 Al~lrpn~A~-------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 278 ALNLRPNHAV-------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHhcCCcchh-------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999998754 455677777778999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
|..+++.+++|.++..+|.+++|...|+++++..|+.+.++.+||.+|.++|++++|+.+|+.++.+.|..++++.++|.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN 430 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHH
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (595)
.|..+|+...|+.+|.+|+.++|...+++.|+ +..|-..|+-.++...
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL--asi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL--ASIYKDSGNIPEAIQS 478 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH--HHHhhccCCcHHHHHH
Confidence 99999999999999999999999999999985 5566666765555443
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6.1e-38 Score=325.94 Aligned_cols=382 Identities=16% Similarity=0.178 Sum_probs=331.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
+..+...|..++..|+|++|+..|+++++..|+ +..+.++|.|+..+|++++|+..+.++++++|++..+++.+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHH------------------------------HHHHHHH------------------
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAIV------------------ 159 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~------------------------------~~~~a~~------------------ 159 (595)
.+|++++|+..|..+....+..... +..++..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887766554332211 0001110
Q ss_pred --------HHHhHHHH---HHhCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007634 160 --------LTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (595)
Q Consensus 160 --------~~~l~~~~---~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 225 (595)
+..+|... ...+++++|++.|++++.. .|....++..+|.++..+|++++|+..|+++++.+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 01111111 1236899999999999986 477788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 305 (595)
..+..+|.++...|++++|+..|+++++.+|+++..+..++.+ +...|++++|+..|++++..+|++...+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL-------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 9999999999999999999999999999999988766555554 455789999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH------HHHHHHH-H
Q 007634 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS------LNNLGVV-Y 378 (595)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~la~~-~ 378 (595)
+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|..... +...+.+ +
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875332 2233333 3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 44799999999999999999999999999999999999999999999999999887554
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.5e-36 Score=330.95 Aligned_cols=405 Identities=20% Similarity=0.186 Sum_probs=329.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.++..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+...|++++|+..+++++..+|.+... +..++..+...|++++|+..+++++...|.++..+..+|.++...|
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888776654 4556677777888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH----------------
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL---------------- 269 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------------- 269 (595)
++++|+..|+++++..|.++..+..+|.++...|++++|+..++++++..|++...+..++.++
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888766655554433
Q ss_pred -----------HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 270 -----------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (595)
Q Consensus 270 -----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 338 (595)
..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..++++++..|++..++.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334556667788888888888888888776 66777888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 007634 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (595)
.+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.+++++++..|+++..+..+|.++...|++
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 888888888888888888888888888888888888888888888 7788888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHH
Q 007634 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (595)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (595)
++|..+|+++++.+|.++.+..++ +..+...|+.+++.+..
T Consensus 854 ~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 888888888888888877766664 55566667666655443
No 5
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=298.00 Aligned_cols=299 Identities=22% Similarity=0.317 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 282 INQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 282 ~~~A~~~~~~~~~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
..-++..+...+..++.++..+.. +...+...+....+.......+..+|.+..+..+++......|....+...+..
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333555555555667777765433 466777778888888888889999999999999888888877766666555554
Q ss_pred -HHccCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 360 -ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 360 -al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+....|.+......+ +.....+|+..++...++++....|.++.+...+.....+...+. ...
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~~ 196 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EEA 196 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hcc
Confidence 777888887665555 788888888888999999999988888766665555533333332 333
Q ss_pred CCChhhhhhHHHH-----hhhccCCCcHHHHHHHHHHHHHHHhhc---cccCCCCC-CCCCCCCeEEEEecCCcccchHH
Q 007634 433 PDSRNAGQNRLLA-----MNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWDN-TKDPERPLVIGYVSPDYFTHSVS 503 (595)
Q Consensus 433 p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~igy~s~d~~~h~~~ 503 (595)
|.+-.......+. +.++.. ++..-.....++.+...... .+++.|.. ....++|+||||+|+|++.|+|+
T Consensus 197 ~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg 275 (620)
T COG3914 197 PTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVG 275 (620)
T ss_pred chHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchHH
Confidence 3333222222111 122221 23333444555555554322 23444542 23568999999999999999999
Q ss_pred HhhhhhhcccCCCceEEEEeeCC-ccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEEEeCCCCCCCChh
Q 007634 504 YFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKL 582 (595)
Q Consensus 504 ~~~~~~~~~~d~~~fe~~~y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~ 582 (595)
+++.+++++|||++||||+|+.+ ++.|..+.|++..+ ++|.++.+|+|.++|++|+.|+|||||||+|||..+|+
T Consensus 276 ~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~ 351 (620)
T COG3914 276 FLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRC 351 (620)
T ss_pred HHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccch
Confidence 99999999999999999999998 66788999999988 67999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccC
Q 007634 583 GMMACQPAPVQVC 595 (595)
Q Consensus 583 ~~~a~r~APvq~~ 595 (595)
+|||.||||||||
T Consensus 352 ~v~A~RpAPiqvs 364 (620)
T COG3914 352 QVFAHRPAPIQVS 364 (620)
T ss_pred hhhhcCCCceEEe
Confidence 9999999999997
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.6e-35 Score=323.59 Aligned_cols=367 Identities=15% Similarity=0.112 Sum_probs=320.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH--------------H
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 118 (595)
..|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45888999999999999999999999999999999999999999999999999999999997643 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (595)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2355888999999999999999999999998765 777888999999999999999999999999877665554
Q ss_pred H------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007634 199 V------------------------------------------VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (595)
Q Consensus 199 ~------------------------------------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (595)
. ++...|++++|+..|+++++.+|+++.+++.+|.++.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4 4456799999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH-------------------------------------Hhhhhhhhc
Q 007634 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALT-------------------------------------DLGTKVKLE 279 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------------------------------------~l~~~~~~~ 279 (595)
..|++++|+..++++++..|.++..+..++..+. ..+..+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999999998877655443322 234445566
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
|++++|+..++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.+++
T Consensus 587 G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777665 57888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------EAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+++..|++..++..+|.++...|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998766443 4666779999999999999999999985
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-34 Score=319.38 Aligned_cols=412 Identities=18% Similarity=0.188 Sum_probs=332.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------------------------------CCHHH------
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVEA------ 84 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------------------~~~~~------ 84 (595)
+.+....+.+|..++..|++++|+..+++++...+ +....
T Consensus 178 P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 45677889999999999999999999998865432 11100
Q ss_pred --------------HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 85 --------------HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 85 --------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
...+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 013477888999999999999999999999999999999999999999999999999999999865
Q ss_pred HHH--HHH-----HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 151 PAA--ECL-----AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 151 ~~~--~~~-----a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
... ..+ ......+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|+
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 421 111 1123456888999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH------------------------------------------HHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 224 YAEAYCNMGVI------------------------------------------YKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 224 ~~~~~~~la~~------------------------------------------~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
+..++..++.+ +...|++++|+..|+++++.+|+++..
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 88776655544 445688888888888888888887765
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA--------------- 326 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~--------------- 326 (595)
+..++. ++...|++++|+..++++++..|+++..++.++..+...+++++|+..++++
T Consensus 498 ~~~LA~-------~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 498 TYRLAQ-------DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred HHHHHH-------HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 544444 4444678888888888888888888887777777777777777776665542
Q ss_pred -------------------------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 007634 327 -------------------------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (595)
Q Consensus 327 -------------------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (595)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2236777778888899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh----hhHHHHhhhccCCCcHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG----QNRLLAMNYINEGHDDKL 457 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~~~~~~~~~~~~~~~~~ 457 (595)
|++++|+..++++++..|+++.++..+|.++...|++++|.++|++++...|+++... ..+..+..+...|+.+++
T Consensus 651 g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 651 GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999988998888999999999999999999999999998887665422 222235556667777766
Q ss_pred HHHHHH
Q 007634 458 FEAHRD 463 (595)
Q Consensus 458 ~~~~~~ 463 (595)
...++.
T Consensus 731 ~~~y~~ 736 (1157)
T PRK11447 731 LETYKD 736 (1157)
T ss_pred HHHHHH
Confidence 655443
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=3.2e-34 Score=296.45 Aligned_cols=364 Identities=10% Similarity=-0.017 Sum_probs=328.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.....+...+..+...|++++|+.+++.++...|+++.+++.+|.+....|++++|+..|+++++.+|+++.++..+|.+
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+...|++++|+..|++++..+|++... +..++.++...|++++|+..+++++...|+++.++..++ .+...|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g 191 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKS 191 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcC
Confidence 999999999999999999999998876 667788888899999999999999999999998887765 488999
Q ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 206 QYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
++++|+..++++++..|. .......++.++...|++++|+..+++++...|++...+..++.++.. .|++++
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-------~G~~~e 264 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-------SGRSRE 264 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCchh
Confidence 999999999999998763 344556678899999999999999999999999987766665555555 567775
Q ss_pred ----HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 285 ----GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 285 ----A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
|+..++++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 361 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
+..+|++...+..+|.++...|++++|+..|+++++.+|++. ...+++|...|.++++..+...
T Consensus 345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCcc
Confidence 999999988888889999999999999999999999999864 3455677777777777665543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.7e-34 Score=314.42 Aligned_cols=404 Identities=22% Similarity=0.225 Sum_probs=290.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
......++..+...|++++|+..+++++..+|.++..+..+|.++...|++++|+..|+++++.+|++...+..+|.++.
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH---------------------------HHHHHhHHHHHHhCChHHHHHHH
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAECLA---------------------------IVLTDLGTSLKLAGNTQDGIQKY 180 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a---------------------------~~~~~l~~~~~~~~~~~~A~~~~ 180 (595)
..|++++|+..+++++...|+.......++ .++..+|.++...|++++|+..|
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666666666666666665554433222111 12555677777777777777777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 007634 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (595)
Q Consensus 181 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 260 (595)
+++++.+|++..++..++.++...|++++|+..+++++...|.+..++..++.++...|++++|+..+++++...|.+..
T Consensus 489 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 568 (899)
T TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE 568 (899)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777776655
Q ss_pred HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (595)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 340 (595)
.+.. ++..+...|++++|+..+++++...|.+...+..+|.++...|++++|+..|+++++..|.++.++..+
T Consensus 569 ~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 641 (899)
T TIGR02917 569 PALA-------LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641 (899)
T ss_pred HHHH-------HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4433 444445567888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (595)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (595)
|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++.+.+..|.++..+..+|.++...|++++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888888888888888888888888888888888888888887778777788888888888888888
Q ss_pred HHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHH
Q 007634 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (595)
Q Consensus 421 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (595)
|+..|++++...|++ ....+ ++..+...|+..+..+..
T Consensus 722 A~~~~~~~~~~~~~~-~~~~~--l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 722 AIQAYRKALKRAPSS-QNAIK--LHRALLASGNTAEAVKTL 759 (899)
T ss_pred HHHHHHHHHhhCCCc-hHHHH--HHHHHHHCCCHHHHHHHH
Confidence 888888888887776 22222 344455555555544433
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.2e-33 Score=291.95 Aligned_cols=363 Identities=20% Similarity=0.172 Sum_probs=308.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~ 161 (595)
...+..+|..++..|++++|+..|+++++..|+ +..+.++|.+|..+|++++|+..+.++++++|++..+ +.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 346778999999999999999999999999996 7789999999999999999999999999999998877 77
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCC------------------------------CHHHH-----------------
Q 007634 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH------------------------------YAPAY----------------- 194 (595)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~------------------------------~~~~~----------------- 194 (595)
.+|.++...|++++|+..|..+...++. +...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 7888888889999998877655433221 11111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 195 ----------------~~la~~~---~~~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
..++..+ ...+++++|+..|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1236799999999999986 47778899999999999999999999999999
Q ss_pred hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 007634 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 332 (595)
.++|.....+..++.++ ...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 359 ~l~P~~~~~~~~la~~~-------~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMN-------LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HcCCCcHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 99999876655555544 44689999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH------HH
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA------YN 406 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~ 406 (595)
+..++..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++++.|+.... +.
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875332 22
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHH
Q 007634 407 NLG-VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (595)
Q Consensus 407 ~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (595)
..+ .++...|++++|..+++++++++|++..++.. ++..+...|+.+++....
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHH
Confidence 333 33445799999999999999999998876554 466777778777665443
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.5e-33 Score=289.91 Aligned_cols=366 Identities=12% Similarity=0.020 Sum_probs=328.6
Q ss_pred HhCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH
Q 007634 59 RSRNKFVDALALYEIVLEK---DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (595)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (595)
+++.+|+.---++...-+. ..++.......+..+...|++++|+..++.++...|+++.++..+|.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 4566666555555554443 2334456677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (595)
Q Consensus 136 ~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 215 (595)
+..+++++..+|++..+ +..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++
T Consensus 96 ~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 96 LQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999887 67778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 007634 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 216 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (595)
+++...|+++..+..++ .+...|++++|+..+++++...|...... ...++..+...|++++|+..+++++..
T Consensus 169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999998887765 48899999999999999998876433211 123345556689999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 296 NWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 296 ~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
.|+++.++..+|.++...|++++ |+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++...
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 9999999999999999999999999999998888888999999999999999999999999987543
No 12
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=244.13 Aligned_cols=380 Identities=18% Similarity=0.172 Sum_probs=318.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
+..+-..|+.++..|+|++|+++|.++++..|+.+..+.+++-||...|+|++.++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhc--------------------------------CCCCHHHHHHHHHHHHH-------------
Q 007634 128 DEGRLVEAAESYHKALSA--------------------------------DPSYKPAAECLAIVLTD------------- 162 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~--------------------------------~~~~~~~~~~~a~~~~~------------- 162 (595)
.+|++++|+....-.--. .|.-+.+.. ++. ++.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f-i~s-yf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF-IAS-YFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH-HHH-HHhhccccccccccCC
Confidence 999999987654321100 011110000 000 000
Q ss_pred -------h--HHHHHHh---CChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 163 -------L--GTSLKLA---GNTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKA 217 (595)
Q Consensus 163 -------l--~~~~~~~---~~~~~A~~~~~~~l~~~----~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (595)
+ +.-.... ..|.+|...+.+..... ..+ +.++...|..++-.|++-.|...++++
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0 0011111 24555555555443321 112 567788899999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC
Q 007634 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297 (595)
Q Consensus 218 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 297 (595)
++++|.+...|..+|.+|...++.++....|.++.+++|.+++.++..+++++.+ +++++|+.-|++++.++|
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-------~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-------QQYEEAIADFQKAISLDP 425 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-------HHHHHHHHHHHHHhhcCh
Confidence 9999999999999999999999999999999999999999999888887777775 599999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CHHHH
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSL 371 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~ 371 (595)
++.-.+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|.+++.+.|. ++..+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 55556
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 372 NNLGVVYT-VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 372 ~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
...|.+.. -.+++..|+..++++++++|....++..||.+..++|+.++|+++|++++.+.....
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 55555433 458999999999999999999999999999999999999999999999998865443
No 13
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=3.9e-31 Score=279.67 Aligned_cols=410 Identities=14% Similarity=0.091 Sum_probs=339.9
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
..+....-....++.-.|++++|+..+.++...+|....++..+|.++...|++++|+..|+++++.+|+++.++..++.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35566667777888999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
++...|++++|+..++++++..|++.. + ..+|.++...|++++|+..++++++..|++..++..++.++...
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~-------~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-L-------LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-H-------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999876 3 44566777789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 007634 205 MQYDTALGCYEKAALERPMYA-----EAYCNMGVIYK-----NRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~-----~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (595)
+..++|+..++++.. .|... .....+..+.. ..+++ ++|+..++.+++..|.++........+...
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 999999999998765 54421 12222222222 22334 789999999997766555443333333333
Q ss_pred -hhhhhhhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q 007634 272 -LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 345 (595)
Q Consensus 272 -l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~ 345 (595)
++. +...+++++|+..|+++++..+..+ .+...+|.++...|++++|+..|+++++.+|.+ ......++.++.
T Consensus 243 ~l~~-Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGA-LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHH-HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 332 3456899999999999998865432 344446999999999999999999999888765 456778888899
Q ss_pred HcCCHHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 346 DRDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
..|++++|+..++++....|. ...++..+|.++...|++++|+..+++++...|+++.++..+|.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999988763 13567889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHHHHHHH
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (595)
++...|++++|++.++++++++|++....... ++.++..++.+++....++...
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~--a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQ--AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999877664 5567777777776665555443
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.7e-31 Score=282.43 Aligned_cols=380 Identities=15% Similarity=0.086 Sum_probs=321.6
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+.....+..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++.+|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLG 198 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la 198 (595)
.++...|++++|+..++++++..|++... +..++.++...+..++|+..++++.. .|+.. .....+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~-------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQY-------PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELV 195 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887 45567777778999999999987776 54421 1122222
Q ss_pred HHHH-----HcCCH---HHHHHHHHHHHHhCCCCHHH-------HHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 199 VVYS-----ELMQY---DTALGCYEKAALERPMYAEA-------YCN-MGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 199 ~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~~-------~~~-la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
.+.. ..+++ ++|+..++++++..|.++.. ... ++ .+...|++++|+..|+++++..+..+..
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHH-
Confidence 2222 22345 78999999999764443322 222 33 3467799999999999999886543321
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------ 332 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------ 332 (595)
....++..+...|++++|+..|+++++..|.+ ......++.++...|++++|+..++++....|.
T Consensus 274 -----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~ 348 (765)
T PRK10049 274 -----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG 348 (765)
T ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC
Confidence 11113556667889999999999999888765 456778888899999999999999999988763
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 007634 333 ---------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (595)
Q Consensus 333 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (595)
...++..++.++...|++++|++.+++++...|++..++..+|.++...|++++|+..+++++.++|++..
T Consensus 349 ~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 349 SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 24577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999998654
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=3.2e-30 Score=271.94 Aligned_cols=391 Identities=14% Similarity=0.061 Sum_probs=298.5
Q ss_pred ccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 007634 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (595)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (595)
....+.+..++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..
T Consensus 38 ~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~ 117 (987)
T PRK09782 38 DYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS 117 (987)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 33457788999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------------------HHHhHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLK 168 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~---------------------------------~~~l~~~~~ 168 (595)
++.+ +++++|+..|+++++.+|++.++...++.. ...++.+|.
T Consensus 118 La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 118 LAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred HHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHH
Confidence 8776 999999999999999999999988777765 122367788
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-------------------------------HHcCCHHHHHHHHHHH
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY-------------------------------SELMQYDTALGCYEKA 217 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-------------------------------~~~g~~~~A~~~~~~a 217 (595)
.+++|++|+..+.++++..|.+......++.+| ...|+.++|...+++.
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 899999999998888777665544333333333 3333333333322211
Q ss_pred --------------------------------------------------------------------------------
Q 007634 218 -------------------------------------------------------------------------------- 217 (595)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (595)
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence
Q ss_pred -------------------------------------------------HH-----------------------------
Q 007634 218 -------------------------------------------------AL----------------------------- 219 (595)
Q Consensus 218 -------------------------------------------------l~----------------------------- 219 (595)
..
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 00
Q ss_pred ------------------------------------hCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 220 ------------------------------------ERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 220 ------------------------------------~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
..|. ++.+++.+|.++.. ++.++|+..+.+++...|+...
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~- 511 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ- 511 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-
Confidence 1133 56677889988887 7888899988888888887532
Q ss_pred HhhHHHHH--------------------------HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 262 KNNMAIAL--------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 262 ~~~~~~~~--------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
...++.++ ..+|..+...|++++|+.+++++++..|.....+..++......|+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC
Confidence 22222221 2233445566777777777777777777776666666666666688
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+++|+..++++++.+|+ +.++..+|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|+..|++++
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888888888875 77788888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+.+|+++.+++++|.++..+|++++|+.+|+++++++|++....
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 88888888888888888888888888888888888888765443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-30 Score=256.66 Aligned_cols=399 Identities=22% Similarity=0.266 Sum_probs=314.6
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
++.++-.++..|.+.+..|+|..|+.+|++++..+|.. ++....+|.|+..+|+.+.|+..|+++++++|.+..++..|
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 34677889999999999999999999999999999974 57889999999999999999999999999999999999988
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHH------------------------------HHHHHhHHHHHH
Q 007634 123 GILYKDEG---RLVEAAESYHKALSADPSYKPAAECLA------------------------------IVLTDLGTSLKL 169 (595)
Q Consensus 123 a~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~a------------------------------~~~~~l~~~~~~ 169 (595)
|.+-.... .+..+...+.++...++.++.+...++ ..++.+|.++..
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 88877654 466788888888888888887655443 346789999999
Q ss_pred hCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHH
Q 007634 170 AGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESA 244 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~----~~~~A 244 (595)
+|++++|..+|.++++.++++ .-.++.+|+.++..|+++.|..+|+++++..|++.+....+|.+|...+ ..+.|
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 999999999999999999998 7888999999999999999999999999999999999999999998886 67889
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHH-------------------------------HHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 245 IACYERCLAVSPNFEIAKNNMAIAL-------------------------------TDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~-------------------------------~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
..++.++++..|.+..+|..++.++ .++|..++..|++.+|...+..++
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 9999999999999888888777654 334555677888888888888887
Q ss_pred hh-----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 294 YY-----NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 294 ~~-----~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
.. +++. ....+++|.++...++++.|.+.|..+++.+|....++..+|......++..+|...++.++..
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 66 1111 2357788888888888888888888888888888777777776666677777777777777777
Q ss_pred CCCCHHHHHHHHHHHHh------------------------------------------------cCCHHHHHHHHHHHH
Q 007634 364 KPNFSQSLNNLGVVYTV------------------------------------------------QGKMDAAAEMIEKAI 395 (595)
Q Consensus 364 ~~~~~~~~~~la~~~~~------------------------------------------------~g~~~~A~~~~~~al 395 (595)
+..++.++..+|.++.. .+.+++|++.|.+++
T Consensus 560 d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 560 DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 66655555555544332 223455666666666
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
..+|.+..+-..+|.++...|++.+|+..|.++.+--.++.++|.|.
T Consensus 640 ~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 640 RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 66666666556666666666666666666666655555555555553
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-30 Score=257.04 Aligned_cols=395 Identities=19% Similarity=0.249 Sum_probs=340.6
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
+..++.++.+|+.+..+|+|++|..+|.++++.+|++ .-.++.+|..++..|+++.|..+|+++++..|++.+....+|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3567789999999999999999999999999999988 788999999999999999999999999999999999999999
Q ss_pred HHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------------------------------HHHhHHHHH
Q 007634 124 ILYKDEG----RLVEAAESYHKALSADPSYKPAAECLAIV-------------------------------LTDLGTSLK 168 (595)
Q Consensus 124 ~~~~~~g----~~~~A~~~~~~~l~~~~~~~~~~~~~a~~-------------------------------~~~l~~~~~ 168 (595)
.+|...+ ..+.|..+..++++..|.+.+++..++.+ +.++|..++
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 9998886 67889999999999999998888777664 345777888
Q ss_pred HhCChHHHHHHHHHHHhh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007634 169 LAGNTQDGIQKYYEALKI-----DPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~-----~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (595)
..|++.+|...|.+++.. +++ +....+++|.++...++++.|.+.|..+++.+|...+++..+|.+....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 889999999999888876 222 1235788899999999999999999999999999999999998888888
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----
Q 007634 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE---- 312 (595)
Q Consensus 239 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~---- 312 (595)
++..+|...++.++..+..++.++..++..+ .....+..|.+-|+..++... .++.+...||++++.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~-------l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLH-------LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHH-------HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 8889999999999998888887766555444 445677777776666665432 356677788887754
Q ss_pred --------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 313 --------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 313 --------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
.+.+++|++.|.+++..+|.+..+-+.+|.++...|++.+|..+|.++.+...++..+|.++|.||..+|+|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHh
Q 007634 385 DAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (595)
Q Consensus 385 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 446 (595)
..|++.|+.++... .++.+++..||.++.+.|.+.+|.+...+|+.+.|.++....|+.+.+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 99999999999873 356899999999999999999999999999999999999988876544
No 18
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-29 Score=231.72 Aligned_cols=390 Identities=21% Similarity=0.226 Sum_probs=333.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
......|...+..|+|+.|+.+|.+++.++|.|...+.+...++..+|+|++|++.-.+.++++|+.+..|..+|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH---------HHHH-hCC-------hHHHHHHHHHHHhh-----
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT---------SLKL-AGN-------TQDGIQKYYEALKI----- 186 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~---------~~~~-~~~-------~~~A~~~~~~~l~~----- 186 (595)
.|+|++|+..|.+.++.+|++......++.+...... .+.. .++ .+.+.....+.+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999999999999998887777665521100 0000 000 00000111111111
Q ss_pred ------------------------------------CCC---------------------CHHHHHHHHHHHHHcCCHHH
Q 007634 187 ------------------------------------DPH---------------------YAPAYYNLGVVYSELMQYDT 209 (595)
Q Consensus 187 ------------------------------------~~~---------------------~~~~~~~la~~~~~~g~~~~ 209 (595)
.|. .......+|...+...++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 110 02345678999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 007634 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (595)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (595)
|++.|.+++.++ .+...+.+.+-+|+..|.+.+.+.....+++...........++.++..+|..+...++++.++.+|
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 999999999999 8889999999999999999999999999998888777777788999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 007634 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (595)
Q Consensus 290 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (595)
.+++..... ..+.......++++...+...-++|.-..--...|..++..|+|..|+..|.++++.+|+++.
T Consensus 322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 998876655 556667777888888888888889988888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhh
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 447 (595)
.+.++|.||..+|.+..|+...+++++++|+...+|..-|.++..+.+|++|.+.|+++++++|++.++.....-++.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888766544443
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.7e-27 Score=251.38 Aligned_cols=361 Identities=13% Similarity=0.049 Sum_probs=309.5
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCC---
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGR--- 131 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~--- 131 (595)
....+++.+|........+..|.+...+..++......|++++|...|+++....++. ......++.+|...+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 3455788888888888888889999999999999999999999999999998863322 2234477777766544
Q ss_pred ----------------------HHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 007634 132 ----------------------LVE---AAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 132 ----------------------~~~---A~~~~~~~l~~~~~--~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (595)
..+ +...+.+++...|. +... +..+|.++.. ++..+|+..+.+++
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a-------~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA-------WNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH-------HHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 222 23334444444555 5444 7788888876 89999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 007634 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (595)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 264 (595)
...|+.. ....+|.++...|++++|+..++++....|. ...+..+|.++...|++++|+.+++++++..|........
T Consensus 504 ~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~ 581 (987)
T PRK09782 504 QRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW 581 (987)
T ss_pred HhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH
Confidence 9999854 4666788888999999999999998777665 4567899999999999999999999999999887544332
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007634 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344 (595)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 344 (595)
++......|++++|+..++++++.+|+ ...+..+|.++.+.|++++|+..|++++..+|+++.++.++|.++
T Consensus 582 -------La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 582 -------LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred -------HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 333333458999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++..+....|.+.....+++.|.+.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCh
Q 007634 425 YEQCLKIDPDSR 436 (595)
Q Consensus 425 ~~~al~~~p~~~ 436 (595)
+.++..++|+..
T Consensus 734 ~~r~~~~~~~~~ 745 (987)
T PRK09782 734 VGRRWTFSFDSS 745 (987)
T ss_pred HHHHhhcCccch
Confidence 999999999876
No 20
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.97 E-value=3.9e-32 Score=257.81 Aligned_cols=104 Identities=40% Similarity=0.646 Sum_probs=90.9
Q ss_pred eEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccC-ChhhHHHHHHhhhcCCceeeCCCCC-HHHHHHHHHhC
Q 007634 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKA-DAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 565 (595)
Q Consensus 488 l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~i~~d 565 (595)
|||||||+||++|||++|+.+++++||+++|||+||+.++++ +..+++++..+ ++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~----~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEA----DHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHS----EEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhC----CeEEECccCCcHHHHHHHHHHC
Confidence 799999999999999999999999999999999999998754 45777777765 7999999986 68999999999
Q ss_pred CCcEEEeCCCCCCCChhhhhhcCCCCcccC
Q 007634 566 KIDILVELTGHTANNKLGMMACQPAPVQVC 595 (595)
Q Consensus 566 ~idilvdl~g~t~~~~~~~~a~r~APvq~~ 595 (595)
+|||||||+|||.++|++|||+||||||||
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvs 106 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVS 106 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEE
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEE
Confidence 999999999999999999999999999996
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2e-28 Score=232.80 Aligned_cols=307 Identities=20% Similarity=0.274 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 007634 117 CAHTHCGILYKD--EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (595)
Q Consensus 117 ~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 194 (595)
..+..+|..|.. +-+..+|+..|.+.-...++... ++..+|..|+.+++|++|..+|+.+-+..|-.....
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~w-------vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGW-------VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 345556655554 45677999999996555555443 478889999999999999999999999999877777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (595)
-....+++.+.+--+--.+-+..++.+|+.|+.|..+|++|.-+++++.|+++|+++++++|.+. .+|..+|.
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-------YayTLlGh 463 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-------YAYTLLGH 463 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-------hhhhhcCC
Confidence 77777888877766655666778899999999999999999999999999999999999999864 45666777
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007634 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (595)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 354 (595)
-+.....++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
..|++|+.++|.++...+..|.+++..+++++|+..+++.-++-|+...+++.+|.+|.++|+.+.|+..|.-|..++|.
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Chh
Q 007634 435 SRN 437 (595)
Q Consensus 435 ~~~ 437 (595)
-.+
T Consensus 624 g~~ 626 (638)
T KOG1126|consen 624 GAQ 626 (638)
T ss_pred cch
Confidence 655
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-26 Score=208.51 Aligned_cols=365 Identities=18% Similarity=0.163 Sum_probs=264.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHH
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGILYKD 128 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 128 (595)
++..|.++.+.|....|+..|..++...|-+..+|..++.+.... +........-| .+...-+.++.++..
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 444566666666666666666666666666666666655543221 11112221222 223333445556666
Q ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 129 EGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~-~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 207 (595)
..+.++++.-++..... .|.+.-. -...|.+.....++++|+..|+...+.+|-..+-.-...++++-.++-
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 66677777777766666 4554433 334555666667888888888888888877666666666666666665
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (595)
.+---+.+.+.+++.-.++...-+|+.|...++.++|+.+|+++++++|+...+|..+ |.-|...++...|++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm-------GHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM-------GHEYVEMKNTHAAIE 385 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh-------hHHHHHhcccHHHHH
Confidence 5555555666677777777788888888888888888888888888888876655544 444444678888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 007634 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (595)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (595)
.|+++++++|.+..+|+.+|+.|.-++.+.=|+-+|++++...|.++..|..+|.||.+.++.++|+++|.+++.....+
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+.-+.+.+++++|..+..+++.-++.-.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 88888888888888888888888888887 3455567777788888888888888888888877655433
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.3e-27 Score=214.21 Aligned_cols=358 Identities=20% Similarity=0.195 Sum_probs=285.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l 163 (595)
.+-..|.-++..|+|++|+++|.+++++.|+.+..+.+++.||...|++++.++...++++++|+...+ +++.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~RR 189 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLRR 189 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHHH
Confidence 455677888999999999999999999999999999999999999999999999999999999998877 5555
Q ss_pred HHHHHHhCChHHHHHHH------------------HHHHhh--------------CCCCH--------------------
Q 007634 164 GTSLKLAGNTQDGIQKY------------------YEALKI--------------DPHYA-------------------- 191 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~------------------~~~l~~--------------~~~~~-------------------- 191 (595)
+..+...|++.+|+.-. ++.++. .|.-|
T Consensus 190 A~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 56666667776665432 121111 11111
Q ss_pred -------HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC----CC---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 192 -------PAYYNLGVVYSELM---QYDTALGCYEKAALERP----MY---------AEAYCNMGVIYKNRGDLESAIACY 248 (595)
Q Consensus 192 -------~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~----~~---------~~~~~~la~~~~~~~~~~~A~~~~ 248 (595)
++-..-+.-+...+ .|.+|...+.+...... .+ ..++...|..++-.|+.-.|...|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 11111111111122 45666665555433211 12 567888899999999999999999
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
+.++.++|.+... |..++..|...++.++-...|.++..++|+++++|+..|.+++-++++++|+.-|++++.
T Consensus 350 ~~~I~l~~~~~~l-------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 350 DAAIKLDPAFNSL-------YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred HHHHhcCcccchH-------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988754 455555666678999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cH
Q 007634 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YA 402 (595)
Q Consensus 329 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~ 402 (595)
++|++..++..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|.+++++.|. ++
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHH
Q 007634 403 EAYNNLGVLYR-DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (595)
Q Consensus 403 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
..+.+.|.+.. -.+++..|...+++|++++|....+...+ +..-+..++.+++
T Consensus 503 ~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl--aq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 503 APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL--AQFELQRGKIDEA 556 (606)
T ss_pred hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH--HHHHHHHhhHHHH
Confidence 55555554433 35899999999999999999988887664 3333444444433
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.97 E-value=3.6e-26 Score=224.15 Aligned_cols=376 Identities=15% Similarity=0.129 Sum_probs=304.8
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+.....++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++.+.|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHH
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGV 199 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~ 199 (595)
...++|++.+|.-+|.++++.+|.+... ....+.++.+.|+...|...|.+++...|.. .......+.
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999776 6667777888899999999999999999832 233345577
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc-----------------
Q 007634 200 VYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNF----------------- 258 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~----------------- 258 (595)
.+...++-+.|++.++.++.... ...+-+..++.++.....++.|.......... .+++
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 88888888999999999998432 34556778899999999999999888776551 1111
Q ss_pred ---HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-C
Q 007634 259 ---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C 333 (595)
Q Consensus 259 ---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~ 333 (595)
......+-.+...++.......+..+++..+..--...+ +.++.+..++..+...|++.+|+.++..+....+. +
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 001111122345555555556666666665544333323 35778999999999999999999999999887653 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------HHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------AEA 404 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~ 404 (595)
..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.++....-++.+ ...
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999988876333222 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
......++...|+.++=+..-..
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 67888889999998875444333
No 25
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-26 Score=215.84 Aligned_cols=390 Identities=21% Similarity=0.234 Sum_probs=329.2
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHcCCCc---
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN--- 115 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~--- 115 (595)
+.++...+.+|++++-.|+|..|..+...- ..+..+....+..+.|+....++++|+..+... +..+|.+
T Consensus 46 ~~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 46 TNDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred cCChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 378888999999999999999998887764 555667788899999999999999998888732 1111211
Q ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH---------------------
Q 007634 116 ----------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI--------------------- 158 (595)
Q Consensus 116 ----------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~--------------------- 158 (595)
....+..|.+|....+.++|...|.+++..++...++...+..
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAML 204 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhh
Confidence 2245667888888999999999999999887776554333221
Q ss_pred -----------------------------------------HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 159 -----------------------------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (595)
Q Consensus 159 -----------------------------------------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (595)
++...+..++..+++.+..+.++..++.+|-+...+-..
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ 284 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLH 284 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHH
Confidence 112245566777888888888888888888877776655
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
-.++..+|+..+-...-.+.++..|+.+-.|+..|..|...|++.+|..+|.++..++|....+|...+.++..
T Consensus 285 ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~------ 358 (611)
T KOG1173|consen 285 IACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG------ 358 (611)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh------
Confidence 55888888888888888888889999999999999999999999999999999999999998877766665554
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
.+.-++|+..|..+.++.|........+|.-|...++++.|..+|.+++.+.|.++-++..+|.+.+..+.|.+|..+|
T Consensus 359 -e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 359 -EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred -cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 6799999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccC----C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 358 QMALSIK----P---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 358 ~~al~~~----~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+.++..- + .....+.+||.++.+++++++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|-
T Consensus 438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999432 1 12456899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhH
Q 007634 431 IDPDSRNAGQNR 442 (595)
Q Consensus 431 ~~p~~~~~~~~~ 442 (595)
++|++.-+..-+
T Consensus 518 l~p~n~~~~~lL 529 (611)
T KOG1173|consen 518 LKPDNIFISELL 529 (611)
T ss_pred cCCccHHHHHHH
Confidence 999996654443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.97 E-value=2.1e-25 Score=230.92 Aligned_cols=384 Identities=12% Similarity=-0.016 Sum_probs=251.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+..++..+..+...+++|++..|+..|+++++.+|.++.....++.++...|+.++|+..+++++...|.....+..+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 34677899999999999999999999999999999996555588888999999999999999999444455555666688
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
++...|++++|++.|+++++.+|+++.. +..++..+...++.++|++.++++...+|..... ..++.++...
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 9999999999999999999999999877 4456777788899999999999999999985554 5566667667
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE----------------------------------- 249 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~----------------------------------- 249 (595)
++..+|+..++++++.+|++.+.+..+..++...|-...|.+...
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 888789999999999999999988888877777665554444333
Q ss_pred -------------HHHhcCCCcHHHHhhHHHHH-----------------------------------HHhhhhhhhcCC
Q 007634 250 -------------RCLAVSPNFEIAKNNMAIAL-----------------------------------TDLGTKVKLEGD 281 (595)
Q Consensus 250 -------------~al~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~~~ 281 (595)
..+...+..+........+. ...|..|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 33332222111111111111 112233444455
Q ss_pred HHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHH
Q 007634 282 INQGVAYYKKALYYNW------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---------------HCAEACNNL 340 (595)
Q Consensus 282 ~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---------------~~~~~~~~l 340 (595)
+++|+.+|+.++...+ ........|...+...+++++|..++++..+..| +..+....+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 5555555555444321 1122233444455555555555555555544222 123344445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (595)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (595)
+.++...|++.+|++.+++.+...|.+..++..+|.++...|.+.+|+..++.+..++|++..+...+|.++..+|++.+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCCCh
Q 007634 421 AIDAYEQCLKIDPDSR 436 (595)
Q Consensus 421 A~~~~~~al~~~p~~~ 436 (595)
|.....++++..|+++
T Consensus 503 A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 503 MELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHhhCCCch
Confidence 5555555555555554
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1e-27 Score=228.03 Aligned_cols=291 Identities=19% Similarity=0.218 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHH
Q 007634 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (595)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~ 177 (595)
..+|+..|++.-...++...++..+|..|+.+++|++|..+|+.+-...|-..+....+..++..+ .+--+--
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-------q~~v~Ls 407 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-------QDEVALS 407 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-------HhhHHHH
Confidence 344444444433344444444444444444444444444444444444443333322222222221 1111111
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
-+.+..+..+|+.|+.|..+|++|..+++++.|+++|+++++++|....+|..+|.-+....+++.|..+|++++..+|.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 12233344445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 007634 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (595)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 337 (595)
+..+|+.++.+|.. +++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.+|++|+.++|.++-..
T Consensus 488 hYnAwYGlG~vy~K-------qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLK-------QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred hhHHHHhhhhheec-------cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 55555555554444 33455555555555555555555566666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
+..|.++...+++++|+..+++.-++-|+...+++.+|.+|.+.|+.+.|+..|.-|..++|.-.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 66666666666666666666666666666666666666666666666666666666666666543
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-25 Score=200.20 Aligned_cols=374 Identities=19% Similarity=0.185 Sum_probs=275.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHH-------------------HHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR-------------------LAFDSFSE 107 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~ 107 (595)
.....+.+|..++..+.|+.|.-.++.... ....+..-.+.+..|..+ ..+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345678899999999999999888877643 222222222222222211 12222222
Q ss_pred HHHc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------------------
Q 007634 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD--------------------- 162 (595)
Q Consensus 108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~--------------------- 162 (595)
-++. ...++..++..|.++.+.|....|+..|..++...|-+-.+|..+..+...
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 2221 234677888999999999999999999999999999988887666543211
Q ss_pred -hHHHHHHhCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 163 -LGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 163 -l~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
++.++....+.++++.-++..... .|.....-...|.+.....++++|+..|+.+.+.+|-..+-.-...++++-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 233333444455555555555554 455555555555555666666666666666665555544444444444444443
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (595)
-.+-.-.-+.+..++.-.++ ...-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 312 ~skLs~LA~~v~~idKyR~E-------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPE-------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhccCCcc-------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 33333333333333332222 12234566667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
+.|+++++++|.+..+|+.+|+.|.-++...=|+-+|++|.+..|+++..|..||.||.+.++.++|+++|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+..++..||.+|.++++..+|..+|++.++..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999843
No 29
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.96 E-value=5.3e-26 Score=198.52 Aligned_cols=324 Identities=19% Similarity=0.222 Sum_probs=241.5
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+.+++..+++|..++..|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHH-----HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPA---AECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~a~-----~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (595)
.+++++|.+++|...|..++..+|++... ...++. .+......+...|+...|++.....+++.|-++..+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999965433 222222 2344556667789999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH---H--H
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA---L--T 270 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~--~ 270 (595)
..+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|+....+...-.+ - .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976432211110 0 0
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
.-.......+++.++++..++.++.+|..+. ....+..|+...+++.+|+..+.+++.++|++..++...+.+|..
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 0111122334444444444444444444222 222233344444444444444444444444444444444444444
Q ss_pred cCCHHHHHHHHHHHHccCCCC
Q 007634 347 RDNLDKAVECYQMALSIKPNF 367 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~ 367 (595)
...|+.|+..|+++.+.++++
T Consensus 354 dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc
Confidence 444444444444444444443
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=1.6e-25 Score=221.93 Aligned_cols=307 Identities=20% Similarity=0.178 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~ 162 (595)
...+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..... .
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~------ 106 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---R------ 106 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---H------
Confidence 3445556666666666666666666666666666666666666666666666666666665532211110 1
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 107 ----------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 158 (389)
T PRK11788 107 ----------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ 158 (389)
T ss_pred ----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH
Confidence 1234555555555666666666666665555555556666666666666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
+|+..++++++..|.+... ..+..+..+|..+...|++++|+..++++++..|+...++..+|.++...|++++|+..
T Consensus 159 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666665555443211 12223344555555556666666666666666666666777777777777777777777
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 007634 323 YELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (595)
Q Consensus 323 ~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (595)
+++++..+|.+ ..++..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|++
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 77777776655 345667777777777777777777777777776543 3677777777777777777777777777776
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 007634 402 AEAYNNLGVLYRD--AGSISLAIDAYEQCL 429 (595)
Q Consensus 402 ~~~~~~la~~~~~--~g~~~~A~~~~~~al 429 (595)
......++..+.. .|+..+|+..+++.+
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 6544444433322 346666666666554
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=6.5e-25 Score=217.55 Aligned_cols=302 Identities=16% Similarity=0.124 Sum_probs=236.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc----HHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTH 121 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 121 (595)
......+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3455667789999999999999999999999999999999999999999999999999999998854332 356788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYN 196 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~ 196 (595)
+|.++...|++++|+..|+++++..|.+..+ +..++.++...|++++|++.++++++..|... ..+..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGA-------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHH-------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 8999999999999999999999887765544 77888888899999999999999888877642 24567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 007634 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (595)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (595)
+|.++...|++++|+..++++++..|+...++..+|.++...|++++|+..+++++...|.+.
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------- 248 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------- 248 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------
Confidence 788888888888888888888888888888888888888888888888888888877655421
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
..++..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..
T Consensus 249 -----------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 249 -----------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHH
Confidence 223445666777777777777777777777776543 37777888888888888888
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAI 395 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 395 (595)
++++++..|++......++..+.. .|+..+++..+++.+
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 888888877776554444433322 346667666666554
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9.9e-26 Score=204.01 Aligned_cols=380 Identities=17% Similarity=0.179 Sum_probs=262.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-----HHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAHT 120 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~ 120 (595)
-..++.+|..|....-+.+|+..|+-+++ ..|+....-.++|.++++..+|.+|+++|+.++..-|.- ..++.
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 34566677777777777777777776654 345555566677777777777777777777777766642 34566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh--------------
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------------- 186 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-------------- 186 (595)
++|..+.+.|+|+.|+..|+.+++..|+...+ +++..|++..|+-++-.+.|.+.+.+
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~--------~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA--------LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhh--------hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 67777777777777777777777777764432 22333333344444444444444332
Q ss_pred CCCC--------------------------------------------------------------HHHHHHHHHHHHHc
Q 007634 187 DPHY--------------------------------------------------------------APAYYNLGVVYSEL 204 (595)
Q Consensus 187 ~~~~--------------------------------------------------------------~~~~~~la~~~~~~ 204 (595)
+|++ .+.-.+.+..+++.
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 0000 01111223334444
Q ss_pred CCHHHHHH-------------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 205 MQYDTALG-------------------------------------CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 205 g~~~~A~~-------------------------------------~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 247 (595)
|+++.|++ +...++.++.-++.++.+.|.+.+..|++++|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 44444444 44444445555566666667777777777788777
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
|++++..+.. ...+++++|..+...|++++|+++|-+...+-.++.++++.++.+|..+.+..+|++++.++.
T Consensus 513 ykeal~ndas-------c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 513 YKEALNNDAS-------CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHcCchH-------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 7777765443 234567778888888888888888888777777778888888888888888888888888888
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
.+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+....||..|....-+++|+.+|+++--+.|+.......
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
++.|+.+.|+|.+|.+.|+..-...|++.+...-+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 88888888888888888888888888877665443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=7.8e-25 Score=198.25 Aligned_cols=367 Identities=19% Similarity=0.191 Sum_probs=305.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
-+..|.+++++.+|.+|+++|+-++..-|. ...++.++|..+.+.|+|+.|+..|+..++..|+...+ +++..|
T Consensus 240 kmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~-~nl~i~ 318 (840)
T KOG2003|consen 240 KMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA-LNLIIC 318 (840)
T ss_pred eeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh-hhhhhh
Confidence 345788899999999999999999998885 24578889999999999999999999999999976544 556788
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC----------C-CHHHHHHHHH------------------------------------
Q 007634 126 YKDEGRLVEAAESYHKALSADP----------S-YKPAAECLAI------------------------------------ 158 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~----------~-~~~~~~~~a~------------------------------------ 158 (595)
++..|+-++-.+.|.+.+.+-. . +++. ..+-.
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~-~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD-NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch-HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 8889999999999999886411 1 1000 00000
Q ss_pred -----------------------HHHHhHHHHHHhCChHHHHHHHHH---------------------------------
Q 007634 159 -----------------------VLTDLGTSLKLAGNTQDGIQKYYE--------------------------------- 182 (595)
Q Consensus 159 -----------------------~~~~l~~~~~~~~~~~~A~~~~~~--------------------------------- 182 (595)
+-.+.+..+.+.|+++.|++.+.-
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 001233456667777777766532
Q ss_pred ----HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 183 ----ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 183 ----~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
++..+.-++.++.+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+.-.+-.++
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 2333444566777778888889999999999999999999999999999999999999999999999887655544
Q ss_pred HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (595)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 338 (595)
+.++..++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-
T Consensus 558 -------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 558 -------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred -------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 4556666777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 007634 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (595)
.+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|...|+..-...|.+.+++..|..+.-.+|-.
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888854
Q ss_pred HHHHHHHHH
Q 007634 419 SLAIDAYEQ 427 (595)
Q Consensus 419 ~~A~~~~~~ 427 (595)
+|.++-++
T Consensus 711 -d~key~~k 718 (840)
T KOG2003|consen 711 -DAKEYADK 718 (840)
T ss_pred -hHHHHHHH
Confidence 34444333
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=1.6e-23 Score=217.01 Aligned_cols=344 Identities=13% Similarity=0.045 Sum_probs=249.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRL 132 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 132 (595)
..+..+...|+.++|+..+++++...|.....+..+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 55566666677777777777777333444444444566777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH----
Q 007634 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD---- 208 (595)
Q Consensus 133 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~---- 208 (595)
++|+..++++...+|.+... ..++.++...++..+|++.++++++.+|++..++..+..++...|-..
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~--------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNY--------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred HHHHHHHHHhcccCcchHHH--------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 77777777777777763321 112333333456655777777777777777666555555555444333
Q ss_pred --------------------------------------------------------------------------------
Q 007634 209 -------------------------------------------------------------------------------- 208 (595)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (595)
T Consensus 225 l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 225 LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCH
Q 007634 209 -----TALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282 (595)
Q Consensus 209 -----~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (595)
++++.|+.+.... +--..+....|..|...++.++|+.+|+.++...+........ ......+...+...+++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD-LLDADDLYYSLNESEQL 383 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc-hHHHHHHHHHHHhcccH
Confidence 3333332222111 1122345566777778888888888888877665421000000 11124455667789999
Q ss_pred HHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 283 NQGVAYYKKALYYNW---------------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 283 ~~A~~~~~~~~~~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
++|..++++..+..| +..+....++.++...|++.+|++.+++.+...|.+..++..+|.++...
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999988544 23567888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
|.+.+|+..++.+..++|++..+...+|.++..++++.+|.....++++..|+++...
T Consensus 464 g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 464 DLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999998554
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-23 Score=196.72 Aligned_cols=403 Identities=17% Similarity=0.141 Sum_probs=313.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+.+....+-+-+..+.+|.-|+-+-+++.... .++.-.+.+|++++..++++.|......- .+...+....+..+.+
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHH
Confidence 456666677778889999999999999998877 78888899999999999999998877764 6667788889999999
Q ss_pred HHHcCCHHHHHHHHHHH------HhcCCCC---------HH---HHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 007634 126 YKDEGRLVEAAESYHKA------LSADPSY---------KP---AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~------l~~~~~~---------~~---~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (595)
+....++++|...+.+. +..+|.+ .. -....+.+++..|.+|....+.++|...|.+++..+
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 99999999999988833 1111221 00 112234456667888888899999999998888776
Q ss_pred CCCHHH---------------------------------------------------------------------HHHHH
Q 007634 188 PHYAPA---------------------------------------------------------------------YYNLG 198 (595)
Q Consensus 188 ~~~~~~---------------------------------------------------------------------~~~la 198 (595)
+.+.++ ....+
T Consensus 172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 554333 33334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
..++..+++.+..+..+..++.+|-+..++-..--++.+.|+..+-...-.+.++..|+.+..|+..+.. |..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y-------Yl~ 324 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY-------YLM 324 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH-------HHH
Confidence 4444445555555555555555555444433333355555555555555555555555555555444444 444
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (595)
.|++.+|..+|.++..++|..+.+|...|..+...|+.++|+.+|..|-++.|........+|.-|...++++-|.++|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN----P---TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
+|+.+.|.++-++..+|.+.+..+.+.+|..+|+.++..- + .....+.+||.++.+++.+++|+.+|++++.+
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999432 2 23456899999999999999999999999999
Q ss_pred CCCChhhhhhHHHHhhhccCCCcHHHHH
Q 007634 432 DPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (595)
Q Consensus 432 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (595)
.|.+..++... +..|...|+.+.+.+
T Consensus 485 ~~k~~~~~asi--g~iy~llgnld~Aid 510 (611)
T KOG1173|consen 485 SPKDASTHASI--GYIYHLLGNLDKAID 510 (611)
T ss_pred CCCchhHHHHH--HHHHHHhcChHHHHH
Confidence 99999888774 556666666655544
No 36
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.94 E-value=3.1e-24 Score=187.56 Aligned_cols=317 Identities=18% Similarity=0.163 Sum_probs=249.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
+|.+++-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 556778899999999999999999999999999999999999999999999999999999999999999997766
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAY------------YNLGVVYSELMQYDTALGCYEKAALERP 222 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~ 222 (595)
-...|.++.++|.+++|..-|+.+++.+|++. +++ ......+...|+...|+.....++++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 56678888889999999999999999999642 222 2233445567899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHH
Q 007634 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (595)
Q Consensus 223 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 302 (595)
-++..+...+.+|...|+...|+.-++.+-++..++.+..+.++..++.+ |+.+.++...+++++++|+....
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v-------gd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV-------GDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh-------hhHHHHHHHHHHHHccCcchhhH
Confidence 99999999999999999999999999999999999988888887777775 58899999999999999987543
Q ss_pred HHH------------HHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 303 MYN------------LGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 303 ~~~------------la~~~~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
+-. -+.-....++|.++++..++.++.+|..+. ....+..|+..-+++.+|+..+.+++..+|+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 221 122334455666666666666666665332 2334555666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 408 (595)
+..++...+.+|.....|+.|+..|+++.+.++++..+...+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 666666666666666666666666666666666665554444
No 37
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=5.8e-23 Score=198.48 Aligned_cols=389 Identities=15% Similarity=0.134 Sum_probs=316.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCcHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCGI 124 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 124 (595)
++..+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|....|+..+++.+... |.++..+...+.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 444555567777888999999999999998877888999999999999999999999999999988 777776666654
Q ss_pred -HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-----------CChHHHHHHHHHHHhhCCCCHH
Q 007634 125 -LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAP 192 (595)
Q Consensus 125 -~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~~ 192 (595)
|....+..++++.+..+++..... ..-...+..+..+|.+|..+ ....++++.++++++.+|.++.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~--~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGG--QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 455679999999999999985422 22223344455555555332 2357899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (595)
+.+.++.-|..+++.+.|+....++++. ..+++.+|..++.++...+++.+|+...+.++...|+|.........+-..
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 9999999999999999999999999999 556899999999999999999999999999999888743221111111111
Q ss_pred ------------------------------------hhhhhhhcCCHHHHHHHHHHHHhh--------------------
Q 007634 272 ------------------------------------LGTKVKLEGDINQGVAYYKKALYY-------------------- 295 (595)
Q Consensus 272 ------------------------------------l~~~~~~~~~~~~A~~~~~~~~~~-------------------- 295 (595)
.+......++..+|...++++...
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 011111222334444444433321
Q ss_pred -CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 007634 296 -NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (595)
Q Consensus 296 -~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (595)
.|.. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.++|++..
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 0111 2367788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 370 SLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++..+|+.++|.++|..++++.+.+|-
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999888888 999999999999999999999999999999999999999999998874
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=1.3e-22 Score=191.81 Aligned_cols=375 Identities=14% Similarity=0.058 Sum_probs=279.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
-..|+.-|+.+.+.+-++-|+..|..+++.+|.....|...+..-..-|..++-..++++++...|.....|...+..+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 44567777777778888888888888888888777777777777777777777777888888888877777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 207 (595)
..|+...|...+.++++.+|++.+. +...-.+.....+++.|..+|.++....|. ..+|+.-+.+...+++.
T Consensus 596 ~agdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNV 667 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhH
Confidence 7788888888888888888876665 333444555667778888888777775554 56777777777777888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (595)
++|+.+++++++..|+....|..+|+++.++++.+.|...|...++..|.....|..++. +....|..-.|..
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak-------leEk~~~~~rAR~ 740 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK-------LEEKDGQLVRARS 740 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH-------HHHHhcchhhHHH
Confidence 888888888888888888888888888888888888888888888888877665554433 3344567777888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 007634 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (595)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (595)
.++++.-.+|++...|.....+-.+.|+.+.|...+.++++..|++...|..-..+.-.-++-..++. |++....+
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~d 816 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHD 816 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCC
Confidence 88888888888888888877788888888888888888888888777777665555555555444444 33444566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
+.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-+.-.+.+.++..-.|.+...|..
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 77777788888888888888888888888888888888777778888887777788888888888877665544
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.94 E-value=1.6e-22 Score=198.89 Aligned_cols=337 Identities=15% Similarity=0.139 Sum_probs=276.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~ 161 (595)
...++..|..++..|++++|...+.++++++|.++.+|+.+|.+|.++|+.+++...+-.+-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 45677888889999999999999999999999999999999999999999999999999999999999887 66
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 007634 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (595)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~ 236 (595)
.++.....+|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. .......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 777777888999999999999999999999999999999999999999999999999999832 233445577888
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh-------------------
Q 007634 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY------------------- 295 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------- 295 (595)
..++-+.|++.++.++....+ ....... ++.++.....++.|..........
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni-------~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNI-------LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHH-------HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 888889999999999883221 1222222 333344456777777766555441
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 007634 296 ----------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (595)
Q Consensus 296 ----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (595)
.++-..+...++.+..+.++..+++..+..--...| +.++.+..++.++...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 011111255555556666666666655544333334 458899999999999999999999999998876
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 365 PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 365 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+.+...-+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 54 467999999999999999999999999999999999999999999999999999999999987433
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=1e-21 Score=185.80 Aligned_cols=380 Identities=13% Similarity=0.050 Sum_probs=314.0
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---------------------------
Q 007634 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------- 112 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------- 112 (595)
+..-|+.|...++++-+.-|.++.+|..-+..-...|+.+.-.++..+.+..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 34567777777888777778888888877777777777776666655554320
Q ss_pred ---------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHH
Q 007634 113 ---------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (595)
Q Consensus 113 ---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~ 177 (595)
.+.-..|..-+..+.+.+.++-|...|..+++..|..... |...+..-..-|..++-.
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLE 570 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHH
Confidence 1112345555666777777788888888888888876665 445555555668888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
.++++++...|.....|...+..+...|+...|...+.++++.+|++.++|+..-.+.....+++.|..+|.++....|.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 88999999999888889999999999999999999999999999999999998888999999999999999998887776
Q ss_pred cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 007634 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (595)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 337 (595)
. .+++........+++.++|+.+++++++..|.....|..+|.++.++++.+.|...|...++..|.++..|
T Consensus 651 e--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 651 E--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred c--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 3 23444445555578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------
Q 007634 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------- 401 (595)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 401 (595)
..++.+-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.+.|.....++++..|++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999887754
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHH
Q 007634 402 --------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (595)
Q Consensus 402 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 456 (595)
+.++...|.++....++++|.++|.++++++|++.++|... .-.++..|..++
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f--ykfel~hG~eed 869 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF--YKFELRHGTEED 869 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH--HHHHHHhCCHHH
Confidence 44667789999999999999999999999999999998764 233444554433
No 41
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-22 Score=181.24 Aligned_cols=386 Identities=14% Similarity=0.104 Sum_probs=319.8
Q ss_pred cccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---------
Q 007634 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------- 111 (595)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------- 111 (595)
+.....+.+.....+.++...++-+.|+..+.++.... ..+.....++..+-.-++..++.-.+...+..
T Consensus 90 S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~ 168 (564)
T KOG1174|consen 90 SYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIE 168 (564)
T ss_pred cCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHH
Confidence 34445678889999999999999999999877654422 24455566666665555554544444443332
Q ss_pred ----------------------CCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH
Q 007634 112 ----------------------DPQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (595)
Q Consensus 112 ----------------------~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~ 166 (595)
.|..+..+ ...+.++....-+..+..++-.-....|++... +..+|.+
T Consensus 169 ~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-------l~~lak~ 241 (564)
T KOG1174|consen 169 ALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-------MMALGKC 241 (564)
T ss_pred HHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-------HHHHhhh
Confidence 22222222 233444444445555566666666777887765 7888999
Q ss_pred HHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (595)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 246 (595)
++..|++.+|+..|+++..++|......-..|.++...|++++-.......+.+......-|+--+.+.+..++++.|+.
T Consensus 242 ~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 242 LYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred hhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 247 ~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+-+++++.+|.+..++...+..+. ..++.++|+-.|+.+..+.|...+.|..+..+|...|++.+|...-+.+
T Consensus 322 ~~eK~I~~~~r~~~alilKG~lL~-------~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 322 FVEKCIDSEPRNHEALILKGRLLI-------ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHhccCcccchHHHhccHHHH-------hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 999999999998876655555544 4679999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 007634 327 FHFNPHCAEACNNLG-VIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (595)
Q Consensus 327 l~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (595)
++..|.++.++..+| .++. .-.--++|.+++++++++.|....+-..+|.++...|.+++++..+++.+...|+ ...
T Consensus 395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~L 473 (564)
T KOG1174|consen 395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNL 473 (564)
T ss_pred HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHH
Confidence 999999999999997 4443 3345689999999999999999999999999999999999999999999999987 678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+..||.++...+.+++|+++|..|+.++|++..+...+
T Consensus 474 H~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 474 HNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999999999999999999999999999998776553
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-22 Score=188.13 Aligned_cols=360 Identities=19% Similarity=0.189 Sum_probs=295.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG- 130 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 130 (595)
-.....+...|+|++|++--.+.++.+|+-+..|..+|..+.-+|+|++|+..|.+.++.+|++...+..++.++....
T Consensus 40 Snrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~ 119 (539)
T KOG0548|consen 40 SNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA 119 (539)
T ss_pred cchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999999999998888887773220
Q ss_pred --------------------CHHHHHHHHHHHHh---cCCCCHHH-----------------------------------
Q 007634 131 --------------------RLVEAAESYHKALS---ADPSYKPA----------------------------------- 152 (595)
Q Consensus 131 --------------------~~~~A~~~~~~~l~---~~~~~~~~----------------------------------- 152 (595)
++-..-..|...++ .+|.+...
T Consensus 120 ~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~ 199 (539)
T KOG0548|consen 120 ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAE 199 (539)
T ss_pred hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCC
Confidence 00111112222222 12211000
Q ss_pred --------------------HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 153 --------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212 (595)
Q Consensus 153 --------------------~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 212 (595)
....+.-...+|...+...++..|++.|..+++++ .+...+.+.+.+|+..|.+.+++.
T Consensus 200 p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~ 278 (539)
T KOG0548|consen 200 PCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIE 278 (539)
T ss_pred cccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhc
Confidence 01123335568999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 213 CYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 213 ~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
...++++..... ..+...+|..+...++++.|+.+|.+++..... ..+.......+++
T Consensus 279 ~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~ 343 (539)
T KOG0548|consen 279 LCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKA 343 (539)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHH
Confidence 998888765442 234445677888889999999999998866544 1222234577888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
+...+...-.+|.-..-....|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.++|.+..|+...+.+++++|
T Consensus 344 ~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 344 LKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 88888888888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
+....|..-|.++..+.+|++|++.|+++++.+|++.++...+..|...+.......+.+++
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999998876444445555555
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.92 E-value=4.6e-21 Score=188.73 Aligned_cols=301 Identities=12% Similarity=0.003 Sum_probs=234.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHH
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNLG 198 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la 198 (595)
...|.+....|+++.|.+.+.++.+..|+.... +...|.+....|+++.|..++.++.+..|+.. .+....+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 455667777888888888888888777765443 44556677777888888888888888777764 4566678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
.++...|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+....++.....+.. ....+ ...
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~--~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAEIG--LLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHH--HHH
Confidence 888888888888888888888888888888888888888888888888888888775444332211111 11111 112
Q ss_pred cCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHH
Q 007634 279 EGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLDK 352 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~--~~la~~~~~~~~~~~ 352 (595)
.+..+++.+.+.++....| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 2333445566777777666 5899999999999999999999999999999999987532 223333444688999
Q ss_pred HHHHHHHHHccCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 353 AVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 353 A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.++|+++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999 889999999999999999999999 67888898655 669999999999999999999998
Q ss_pred Hhc
Q 007634 429 LKI 431 (595)
Q Consensus 429 l~~ 431 (595)
+..
T Consensus 397 l~~ 399 (409)
T TIGR00540 397 LGL 399 (409)
T ss_pred HHH
Confidence 764
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.91 E-value=8.9e-21 Score=186.72 Aligned_cols=302 Identities=12% Similarity=0.009 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILY 126 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 126 (595)
+...+..|...+..|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445567777778888888888888888777777777777778888888888888888888887777764 4555567888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVYS 202 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----~la~~~~ 202 (595)
...|++++|...+++..+..|+++.+ +..++.++...|++++|.+.+.+..+....++.... ....-+.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887765 556666667778888888888877776444333221 1222223
Q ss_pred HcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 203 ELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
..+..+++...+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-------------- 302 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-------------- 302 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH--------------
Confidence 34444555556666666666 467778888888888888888888888888877776432100
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~ 356 (595)
..........++.+.+++.++++++..|+++ .....+|.++.+.|++++|.++
T Consensus 303 -------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 303 -------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred -------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 0011111112333444555555555555555 4444555555555555555555
Q ss_pred HH--HHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 357 YQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 357 ~~--~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
|+ .+++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 34444444333 33555555555555555555555543
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=4.6e-24 Score=199.96 Aligned_cols=262 Identities=21% Similarity=0.197 Sum_probs=122.7
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (595)
..++.++...|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 35588888899999999999766544 488999999999999999999999999999999999989999899888 799
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCH
Q 007634 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKF 316 (595)
Q Consensus 239 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 316 (595)
+++++|+.+++++.+..++ +..+.. ...++...++++++...++++.... +.++..+..+|.++...|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~l~~-------~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRYLLS-------ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccccc-cchhhH-------HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999998876643 322222 3334455789999999999977655 67888999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 317 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
++|+..|+++++.+|+++.+...++.++...|+++++.+.++...+..|.++..+..+|.++..+|++++|+.+|++++.
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998763
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=2.9e-21 Score=168.01 Aligned_cols=383 Identities=17% Similarity=0.146 Sum_probs=294.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHH-HHHcC--CCc---
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN--- 115 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~--- 115 (595)
.-+-+|..+++...|+...+++..+++..|++..+|.....++...- +-.+|...++. .+... |..
T Consensus 6 ~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k 85 (478)
T KOG1129|consen 6 LDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIK 85 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCccc
Confidence 34567889999999999999999999999999999999988876542 22245444432 11111 100
Q ss_pred ----------H-----------HHHHHHHHH-HHHcCCHHHHHHHHH--------------------------------H
Q 007634 116 ----------A-----------CAHTHCGIL-YKDEGRLVEAAESYH--------------------------------K 141 (595)
Q Consensus 116 ----------~-----------~~~~~la~~-~~~~g~~~~A~~~~~--------------------------------~ 141 (595)
. .+-...... -.+-|..+.|+..-+ .
T Consensus 86 ~p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~n 165 (478)
T KOG1129|consen 86 TPFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYN 165 (478)
T ss_pred CCCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceee
Confidence 0 000000000 011122222221111 1
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHH
Q 007634 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTAL 211 (595)
Q Consensus 142 ~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~-------~~~~~~~la~~~~~~g~~~~A~ 211 (595)
+-.++|+.......+...++. .+++..++...|-......++.+ |. +......+|.||+.+|.+.+|.
T Consensus 166 lsRLN~tkYa~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Ae 243 (478)
T KOG1129|consen 166 LSRLNPTKYAERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAE 243 (478)
T ss_pred hhhcCchhhccChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhH
Confidence 112233222222222333332 24455677777776666555542 11 2344467999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHH
Q 007634 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291 (595)
Q Consensus 212 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (595)
+.++.+++..|. ++.+..++.+|.+..+...|+..+.+.++..|.+....... ++++...++.++|.++|+.
T Consensus 244 kqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~-------ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 244 KQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ-------ARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred HHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh-------HHHHHHHHhHHHHHHHHHH
Confidence 999999998875 89999999999999999999999999999999987654444 4455556799999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CCH
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFS 368 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~ 368 (595)
+++.+|.+.++.-.+|.-|+..++.+-|+.+|++++++.-.+++.+.++|.|++..++++-++..|++++.... ...
T Consensus 316 vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aa 395 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAA 395 (478)
T ss_pred HHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 237
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
++|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-...|+-.+...|+
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999988887775
No 47
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.91 E-value=9.3e-20 Score=173.09 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=210.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
....++..+...+..++|.+.++..+++++..|++.+.+...|..+..+|+.++|......++..++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 206 (595)
....+|++|+.+|+.|+.+.|+|... +..++....+.++++.....-.+.++..|.....|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 66777777778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 207 YDTALGCYEKAALER---PM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 207 ~~~A~~~~~~al~~~---~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
+..|...++...+.. |. ..+.......+..+.|.+++|.+.+..--...-+. -......+.++..
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk-------la~~e~ka~l~~k 231 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK-------LAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH-------HHHhhhHHHHHHH
Confidence 999999988877654 32 23455556677778888888877765532211111 1122334555666
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 311 (595)
.+++++|...|...+..+|++...+..+-.++.
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 779999999999999999998877776666664
No 48
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.91 E-value=1.5e-21 Score=193.06 Aligned_cols=364 Identities=20% Similarity=0.211 Sum_probs=274.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (595)
.++...|...|-+++.++|..+.++..+|..|....+...|.++|.+|.++++.+..+....+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007634 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 141 ~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (595)
.+-+..|..... ..|...|-.+...++..+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..+
T Consensus 551 ~~~qka~a~~~k-----~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACK-----ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhhhchHHHHH-----hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 666655543222 225668999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh-----
Q 007634 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY----- 295 (595)
Q Consensus 221 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 295 (595)
+|.+.-..+..+.+....|+|.+|+..+...+............++.++.+++..+...|-..+|..++++.++.
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888877788888888888887777777666666666665532
Q ss_pred --C-CCC--------------------------------------------------------------HHHHHHHHHHH
Q 007634 296 --N-WHY--------------------------------------------------------------ADAMYNLGVAY 310 (595)
Q Consensus 296 --~-~~~--------------------------------------------------------------~~~~~~la~~~ 310 (595)
. -++ +..|+++|..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 1 011 11244444444
Q ss_pred Hh--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 007634 311 GE--------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (595)
Q Consensus 311 ~~--------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (595)
.. +.+...|+.++.+++++..++...|+.+|.+ ...|++.-|..+|-+++...|.+...|.++|.++.+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 33 1122345555555555555555555555555 33355555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+++.|...+.++..++|.+...|...+.+....|+.-++...|....+
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~e 912 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDE 912 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 555555555555555555555555555555555555555555555333
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.91 E-value=2.9e-20 Score=181.92 Aligned_cols=303 Identities=11% Similarity=0.009 Sum_probs=236.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH-HHHH
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNL 197 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l 197 (595)
.+..|......|++++|.+...+.-+..+. +... +...+......|+++.|..++.++.+.+|+.... ....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~------~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVN------YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566667788888888777765544222 2221 3334555577888999999999988888886533 3445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH-HHHHHHhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-AIALTDLGTKV 276 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~l~~~~ 276 (595)
+.++...|++++|+..+++..+..|+++.++..++.+|...|++++|+..+.+..+..+.++.....+ ..++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999988888887776654432211 12222222222
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
....+.+...+.++......|+++.+...++..+...|+.++|...++++++. +.++......+.+ ..++.+++++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 22344555666666666667889999999999999999999999999999994 4456555555554 44999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++ ..+..++.++..+|+.++|..+|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999985 456689999999999999999999998864
No 50
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=1.5e-18 Score=185.34 Aligned_cols=366 Identities=14% Similarity=0.076 Sum_probs=248.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+...++..-..+.+.|++++|+++|+++...+.- +...+..+...+...|..++|...++.... | +...+..+-
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHH
Confidence 44566777777788999999999999999876532 333333445556677778888877766543 3 455666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYS 202 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~ 202 (595)
..+...|++++|...|+++.+....... .++..+...+.+.|+.++|.+.|+++.+.... +...|..+...|.
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~------~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADC------KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777788888888888777765432111 12555666667777888888888777765432 5677777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHhhHHHHHHHhhhhhh
Q 007634 203 ELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
+.|++++|+..|.+..+..- -+...|..+...+.+.|++++|.+.+.++... .|+. . ++..+-..+.
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v-------TynaLI~ay~ 590 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I-------TVGALMKACA 590 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H-------HHHHHHHHHH
Confidence 88888888887777765431 23567777777777778888888877777542 3331 1 2333334455
Q ss_pred hcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAV 354 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~ 354 (595)
+.|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|+.+|++..+. .| +...|..+...+.+.|++++|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHH
Confidence 5677777777777777665 345667777777777777777777777777665 23 3566777777777777777777
Q ss_pred HHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 355 ECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 355 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
++++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|.+.|++...
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777776653 234566777777777777777777777776543 343 56677777777777777777777776654
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.5e-20 Score=165.12 Aligned_cols=309 Identities=15% Similarity=0.107 Sum_probs=268.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 007634 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (595)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~ 167 (595)
.|.++....-+..+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++..++|..... .-..|..+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~-------MD~Ya~LL 276 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA-------MDLYAVLL 276 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh-------HHHHHHHH
Confidence 34444444445555666666677789999999999999999999999999999999999998776 44556667
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 247 (595)
...|++++-.......+........-|+--+...+..+++..|+.+-++++..+|.+..++...|.++...|+.++|+-.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 78899999999999999888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG-VAYG-EMLKFDMAIVFYEL 325 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~~~~ 325 (595)
|+.+..+.|..-..+.. +-.+|...|.+.+|....+.++...|.++.++..+| .++. .-.--++|.+.+++
T Consensus 357 FR~Aq~Lap~rL~~Y~G-------L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 357 FRTAQMLAPYRLEIYRG-------LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHhcchhhHHHHHH-------HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 99999999987655444 444555578999999999999999999999999886 4443 34456899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 326 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
++.+.|....+-..++.++...|.++.++..+++.+...|+ ...+..||.++...+.+.+|+.+|..++.++|++..+.
T Consensus 430 ~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 430 SLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred hhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 99999999999999999999999999999999999998886 46788999999999999999999999999999988776
Q ss_pred HHHHHH
Q 007634 406 NNLGVL 411 (595)
Q Consensus 406 ~~la~~ 411 (595)
..+-.+
T Consensus 509 ~Gl~~l 514 (564)
T KOG1174|consen 509 RGLRLL 514 (564)
T ss_pred HHHHHH
Confidence 655443
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.90 E-value=3.8e-23 Score=193.76 Aligned_cols=261 Identities=20% Similarity=0.148 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
..+..|..++..|++++|++.+++.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3456677777888888888887655443 367777777777777777888888888888877777777777777766 6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g 205 (595)
..+++++|+.+++++.+..++ +.. +.....++...++++++...++++.... +.++..+..+|.++.+.|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~-------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGD-PRY-------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccccccc-cch-------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 777777777777777665433 222 3334445566677777777777765543 456677777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
+.++|+..|+++++.+|+++.+...++.++...|+.+++...++...+..|.++..+..++.++.. .|++++|
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-------lg~~~~A 233 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-------LGRYEEA 233 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-------HT-HHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-------ccccccc
Confidence 777777777777777777777777777777777777776666666655554444333333333333 2344444
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+.++++++..+|+++..+..+|.++...|+.++|..++.++
T Consensus 234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 44444444444444444444444444444444444444443
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.1e-21 Score=168.92 Aligned_cols=244 Identities=20% Similarity=0.274 Sum_probs=208.7
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
..+|.||...|-+.+|.+.++..++..|. ++.+..++.+|....+...|+..+.+.++..|.+...+...+.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 45777777778888888888887776654 77778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (595)
.++|.++|+.+++..|.+.++...++ .-|.-.++++-|+.+|++.++..-.+++.+.++|.+++..++++-++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia-------~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIA-------VGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeee-------eccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 88888888888888888776544333 33344678899999999999999899999999999999999999999
Q ss_pred HHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 321 VFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 321 ~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
..|++++.... ..+++|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999998743 347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHH
Q 007634 398 NPTYAEAYNNLGVLY 412 (595)
Q Consensus 398 ~p~~~~~~~~la~~~ 412 (595)
.|+-.+..++++.+-
T Consensus 459 ~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 459 MPDMAEVTTNLQFMS 473 (478)
T ss_pred CccccccccceeEEe
Confidence 999888887776543
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-19 Score=175.72 Aligned_cols=350 Identities=16% Similarity=0.094 Sum_probs=293.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHcCC-----CcHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDP-----QNAC 117 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~ 117 (595)
...+.|...+..+...|.-..|+.+++..+... |+++..+... ..|....+..++++.+..+++...- -.+.
T Consensus 355 ~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~ 434 (799)
T KOG4162|consen 355 GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR 434 (799)
T ss_pred hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 356788999999999999999999999999888 7776655554 4555678999999999999998432 2356
Q ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 118 AHTHCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 118 ~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
.+..+|.+|..+- ...+++..++++++.+|.++.+ .+.++.-|..+++.+.|.+..+++++.
T Consensus 435 ~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 435 GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALAL 507 (799)
T ss_pred HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 7788888776532 3567899999999999999977 777888888899999999999999999
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------
Q 007634 187 -DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP--------- 256 (595)
Q Consensus 187 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------- 256 (595)
..+++.+|..++.++...+++.+|+...+.++...|+|.........+-...++.++|+..+...+....
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 5568999999999999999999999999999999888665555555555555666666555444332211
Q ss_pred -----------------------------------------------------CcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 257 -----------------------------------------------------NFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 257 -----------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
.....+...-..+...+..+...++.+
T Consensus 588 ~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~ 667 (799)
T KOG4162|consen 588 DEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDD 667 (799)
T ss_pred hhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCch
Confidence 111233334445556677788889999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHH
Q 007634 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMAL 361 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al 361 (595)
+|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.++|++......+|.++...|+..-|.. .+..++
T Consensus 668 ~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 668 EARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred HHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998888888 999999
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 362 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
+++|.++++|+.+|.++...|+.++|.++|..++++.+.+|
T Consensus 748 r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 748 RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999999999987765
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=2.2e-20 Score=190.81 Aligned_cols=249 Identities=15% Similarity=0.024 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 007634 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE---------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (595)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~ 168 (595)
+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|++..+ +..+|.++.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a-------~~~lg~~~~ 349 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA-------LGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHH
Confidence 44555555555555555555555555544422 22455555555555555555544 334444445
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 248 (595)
..|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++.+|.++..+..++.++...|++++|+..+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555554444444455555555555555
Q ss_pred HHHHhcC-CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 249 ERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 249 ~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
++++... |+++..+..++.++.. .|++++|...+.+.....|........++..+...|+ +|...+++.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~-------~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSL-------KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHh-------CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 5555443 4444445555555544 2455555555555555555555555555655555552 5555555544
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
+..............++.-.|+.+.+..+ +++.+.
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 501 ESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 43222222222255555556666666555 554443
No 56
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.89 E-value=1.2e-19 Score=192.01 Aligned_cols=397 Identities=14% Similarity=0.023 Sum_probs=299.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+...+..+...+...++++.|..++..+.+. .| +...+..+...|.+.|++++|.+.|++..+ | +...|..+.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li 196 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTII 196 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHH
Confidence 45667777788888889999999998888764 34 567788888888999999999998887743 2 556788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------------------HHHHHHHHHHHhHHHHHHhCChH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKP-----------------------------AAECLAIVLTDLGTSLKLAGNTQ 174 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~-----------------------------~~~~~a~~~~~l~~~~~~~~~~~ 174 (595)
..|.+.|++++|+..|++..+....... ....-..++..+...|.+.|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 8888899999999999888654321100 00001123566778888899999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (595)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 253 (595)
+|.+.|++.. +.+...|..+...|.+.|++++|+..|++..+.. .-+...+..+...+.+.|++++|.+.+..+++
T Consensus 277 ~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 277 DARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998763 4567889999999999999999999999887643 22467888888999999999999999998887
Q ss_pred cCC-CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C
Q 007634 254 VSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-P 331 (595)
Q Consensus 254 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~ 331 (595)
... .+.. ++..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|+.++|++.|++..+.. .
T Consensus 354 ~g~~~d~~-------~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 354 TGFPLDIV-------ANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred hCCCCCee-------ehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 652 2222 344455566667899999999987754 356688889999999999999999999987653 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 007634 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (595)
.+...+..+...+...|..++|.++|+...+..+ .+...+..+..+|.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll 501 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALL 501 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHH
Confidence 3466778888888899999999999988876432 23457788888899999999999888764 23443 56788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHHHH
Q 007634 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463 (595)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (595)
..+...|+.+.|...+++.+++.|++...+.. +...|...|..+++.+..+.
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~--L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVV--LLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH--HHHHHHhCCCHHHHHHHHHH
Confidence 88999999999999999999999987665543 34566677776665554433
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.89 E-value=2.1e-19 Score=175.91 Aligned_cols=296 Identities=10% Similarity=-0.034 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHcCCCcHHH-HHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDPQNACA-HTHCGIL 125 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~ 125 (595)
+...+..|...+..|+|++|.+.+.+..+..+ ++..++.+ +......|+++.|..++.++.+.+|++..+ ....+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 34455666666667777777766655444322 23333333 444467777777777777777766665432 2333666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH--------HH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--------NL 197 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~--------~l 197 (595)
+...|++++|...++++.+..|+++.+ +..++.++...|++++|++.+.+..+..+.++.... .+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 777777777777777777777776665 444455555566777777666666665544332211 11
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
........+-+...+.++..-+..|+++.+...++..+...|+.++|...++++++..++ +.. ...+..+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l----~~l~~~l----- 305 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERL----VLLIPRL----- 305 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHH----HHHHhhc-----
Confidence 111112222333333333333444556666666666666666666666666666663332 211 1111111
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++ ..+..++.++...|+.++|..+|
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Confidence 12455555555555555555555555555555555555555555555555555443 22334555555555555555555
Q ss_pred HHHHc
Q 007634 358 QMALS 362 (595)
Q Consensus 358 ~~al~ 362 (595)
++++.
T Consensus 385 ~~~l~ 389 (398)
T PRK10747 385 RDGLM 389 (398)
T ss_pred HHHHh
Confidence 55443
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=2.7e-20 Score=190.24 Aligned_cols=251 Identities=12% Similarity=-0.007 Sum_probs=161.1
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 241 (595)
+.+++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4467788888888888888888887777776533 2367777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 321 (595)
++|+..|+++++++|++...+..++.++.. .|++++|+..++++++.+|.++.....++.++...|++++|+.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-------~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFM-------AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 777777777777777766544444333333 4566666666666666666666555555555566666666666
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 322 FYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 322 ~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
.+++++... |+++..+..+|.++...|++++|...+++.....|....+...++..|...|+ +|...+++.++....
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 666666553 55666666666666666666666666666666666666666666666666663 555555554443222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
...-......++.-.|+.+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 222222355566666666665555 444443
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.89 E-value=1.5e-20 Score=156.36 Aligned_cols=214 Identities=24% Similarity=0.245 Sum_probs=198.4
Q ss_pred ccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 007634 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (595)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (595)
.......+..+.+|..|++.|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+++.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 34445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 201 (595)
.|..++.+|++++|...|++++.. |..... +..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..+
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALAD-PAYGEP----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhC-CCCCCc----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 999999999999999999999874 443332 445899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 007634 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 260 (595)
+..|+|-.|..++++.....+-..+.+.....+-...|+-+.+-.+=.+.....|....
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999988888999999999999999999999999998899998764
No 60
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.89 E-value=1e-17 Score=179.02 Aligned_cols=358 Identities=13% Similarity=0.058 Sum_probs=297.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHH
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVE 134 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~ 134 (595)
..+...|..++|..+++.+.. | +...+..+-.++...|++++|...|.++.+.... +...+..+...|.+.|+.++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 346678899999999987754 4 5678888888899999999999999999887543 56788999999999999999
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 135 AAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALG 212 (595)
Q Consensus 135 A~~~~~~~l~~~~~-~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 212 (595)
|..+|+++.+.... +... |..+...|.+.|++++|++.|.++.+..- -+...|..+...|.+.|++++|.+
T Consensus 491 A~~vf~eM~~~Gv~PdvvT-------ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHT-------FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHH-------HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999876432 3333 67777888899999999999999876532 247889999999999999999999
Q ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH
Q 007634 213 CYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (595)
Q Consensus 213 ~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (595)
.+.++... .| +...+..+...|.+.|++++|.+.|+.+.+... .+.. .|..+...+.+.|++++|..
T Consensus 564 lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~-------tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 564 VLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE-------VYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH-------HHHHHHHHHHhcCCHHHHHH
Confidence 99999763 34 467888899999999999999999999988753 2333 34445555666889999999
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--
Q 007634 288 YYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-- 363 (595)
Q Consensus 288 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 363 (595)
+|++..+.. ..+...+..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999998763 2246788899999999999999999999999864 456889999999999999999999999988654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
.| +...|..+...|.+.|++++|.+.|++.... .|+ ...+..+...+.+.|++++|.+++.+..+...
T Consensus 716 ~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 716 RP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 34 4678999999999999999999999988764 454 66777788999999999999999999988643
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=3e-21 Score=181.25 Aligned_cols=261 Identities=19% Similarity=0.245 Sum_probs=200.0
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
+..|..+.+.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCHHH
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 318 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~ 318 (595)
-.+|..++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999888764321110000000000001111233445566666666666 577888888888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 319 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
|+.+|+.++...|++...|+.||-.+....+.++|+..|.+|+++.|....++++||..++.+|.|++|.++|-.+|.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888775
Q ss_pred CCc----------HHHHHHHHHHHHHcCCHHHH
Q 007634 399 PTY----------AEAYNNLGVLYRDAGSISLA 421 (595)
Q Consensus 399 p~~----------~~~~~~la~~~~~~g~~~~A 421 (595)
+.. ..+|..|-.++..+++.+-+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 431 13555555555555555433
No 62
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-21 Score=175.05 Aligned_cols=302 Identities=17% Similarity=0.134 Sum_probs=239.1
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
....++.....+..++++.+|.+|+..+..+++..|+++..|...+.+++..|++++|.-..++.++++|.........+
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~ 124 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREG 124 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchh
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---CCCHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHYAPAYYNLGVV 200 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~ 200 (595)
.++...++..+|...++. ..+ +....|+..+++.+..+ |....+....+.+
T Consensus 125 ~c~~a~~~~i~A~~~~~~--------~~~------------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~c 178 (486)
T KOG0550|consen 125 QCHLALSDLIEAEEKLKS--------KQA------------------YKAANALPTLEKLAPSHSREPACFKAKLLKAEC 178 (486)
T ss_pred hhhhhhHHHHHHHHHhhh--------hhh------------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhh
Confidence 999999999999888871 111 01223333344433332 4445677778999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
+...|++++|...--..+++++.+.++++..|.+++-.++.+.|+.+|++++.++|+....... +.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~----~~---------- 244 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA----SM---------- 244 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH----hh----------
Confidence 9999999999999999999999999999999999999999999999999999999986543211 11
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
.|+....+..-|.-.++.|++.+|.++|..++.++|++ +..|.++|.+...+|+..+|+..
T Consensus 245 ---------------~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 245 ---------------MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD 309 (486)
T ss_pred ---------------hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh
Confidence 11223445556667777777777777777777777765 45667777777777777777777
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
++.++++++....++...|.|+..+++|++|++.|+++++...+
T Consensus 310 c~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 310 CNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77777777777777777777777777777777777777776554
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=6.8e-21 Score=178.89 Aligned_cols=266 Identities=21% Similarity=0.269 Sum_probs=217.4
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+...-+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++.+++..||..
T Consensus 283 ~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 283 IDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred cCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSE 203 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~ 203 (595)
|...|.-.+|..++.+.+...|........--...............+..-.+.|..+....| .+++++..||.+|..
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 999999999999999999887763221000000000000000111234455667777777777 689999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
.|+|++|+.+|+.++...|++...|..||-.+....+.++|+..|++|+++.|....++++++..+.++ |.|.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-------G~yk 515 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-------GAYK 515 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-------hhHH
Confidence 999999999999999999999999999999999999999999999999999999999888888888776 5999
Q ss_pred HHHHHHHHHHhhCCCC----------HHHHHHHHHHHHhcCCHHH
Q 007634 284 QGVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDM 318 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~ 318 (595)
+|.++|-.++.+.+.. ..+|-.|=.++...++.+.
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 9999999999876541 1345544455555555543
No 64
>PLN03077 Protein ECB2; Provisional
Probab=99.88 E-value=2e-18 Score=187.40 Aligned_cols=351 Identities=15% Similarity=0.064 Sum_probs=235.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTD 162 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~ 162 (595)
+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+.. |+... +..
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~ 394 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IAS 394 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHH
Confidence 3333444444444444444444432 1223344444555555555555555555443322 22211 222
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 241 (595)
+-..+...|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCH
Confidence 22233444555555555555554432 2345666777888888888888888887543 3456788888888888888
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH----------------------------hhhhhhhcCCHHHHHHHHHHHH
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTD----------------------------LGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------------------l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
++|+..|++.....+.+...+..+..++.. +-..|.+.|+.++|...|+..
T Consensus 472 ~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 472 FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 888888888875433333333322222222 235677889999999999876
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHH
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQ 369 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~ 369 (595)
+.+..+|..+...|...|+.++|+..|++..+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+ -+..
T Consensus 551 ---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 551 ---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 567889999999999999999999999998875 344 55566677788999999999999999884432 2357
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhc
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 449 (595)
.+..+..++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+.. ++..|.
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l--l~n~ya 702 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL--LCNLYA 702 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH--HHHHHH
Confidence 8899999999999999999999875 35665 6778888888899999999999999999999998765543 444566
Q ss_pred cCCCcHHHH
Q 007634 450 NEGHDDKLF 458 (595)
Q Consensus 450 ~~~~~~~~~ 458 (595)
..|..++..
T Consensus 703 ~~g~~~~a~ 711 (857)
T PLN03077 703 DAGKWDEVA 711 (857)
T ss_pred HCCChHHHH
Confidence 666654443
No 65
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.87 E-value=8.1e-18 Score=178.27 Aligned_cols=354 Identities=13% Similarity=0.037 Sum_probs=266.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCGIL 125 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 125 (595)
.+......+...|++.+|+.+|+.+....+ -+...+..+..++...++++.|...+..+.+. .| +...+..+...
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 466667788899999999999999876543 35678888888999999999999999988874 34 57788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC----------------
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------- 189 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---------------- 189 (595)
|.+.|++++|...|++..+ |+ ... |..+...+...|++++|++.|+++.+....
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~~-~~t-------~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--RN-LAS-------WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--CC-eee-------HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999999999999998754 32 222 677778888899999999999998765322
Q ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 190 --------------------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 190 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
+..++..+...|.+.|++++|.+.|++. .+.+..+|..+...|.+.|++++|+..|+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 1223455667777888888888887765 23456778888888888888888888888
Q ss_pred HHHhc--CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 250 RCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 250 ~al~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+..+. .|+ ..++..+...+...|.+++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|++.
T Consensus 315 ~M~~~g~~pd--------~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 315 EMRDSGVSID--------QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHcCCCCC--------HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77653 233 1245556667777888888888888877765 445667778888888888888888888776
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CcHH
Q 007634 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAE 403 (595)
Q Consensus 327 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 403 (595)
.+ .+...|+.+...|.+.|+.++|++.|++..+.. .-+..++..+...+...|+.++|.++|+...+..+ -+..
T Consensus 387 ~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 387 PR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred CC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 53 345678888888888888888888888876542 12355667777777888888888888888775422 1245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
.|..+..+|.+.|+.++|.+.+++.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC
Confidence 6777888888888888888887654
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=2.4e-19 Score=167.94 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCC---C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 62 NKFVDALALYEIVLEKDS---G-NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (595)
Q Consensus 62 g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (595)
+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455556666666664322 1 244555566666666666666666666666666666666666666666666666555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
.|+++++++|++..+ +..+|.++...|++++|++.++++++.+|+++
T Consensus 120 ~~~~Al~l~P~~~~a-------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 120 AFDSVLELDPTYNYA-------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 555555555555443 44455555555555555555555555555544
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.4e-17 Score=153.46 Aligned_cols=393 Identities=13% Similarity=0.035 Sum_probs=275.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
....++..-..+...|+|++|.....+++...|++..+....-.++.+.++|++|+...++-......+ ...+..+.|.
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~ 89 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCE 89 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHH
Confidence 347888888999999999999999999999999999999999999999999999995554432222122 2237889999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC------------------
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------------ 188 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------------------ 188 (595)
++.+..++|+..++ ..++.+... +...+.++++.|+|++|+..|+..++.+.
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 99999999999998 334444333 44556667777999999999988755422
Q ss_pred -------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCC
Q 007634 189 -------------HYAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 189 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~-------~~~~~~~la~~~~~~~~ 240 (595)
+..+.+++.+.++...|+|.+|++.+++++.+. .+ -..+...++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 135678999999999999999999999995431 11 13467788999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHH------------------------------------------HHHhhhhhhh
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIA------------------------------------------LTDLGTKVKL 278 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~~~~ 278 (595)
.++|...|...++.+|.+.........- +.+.+.....
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887664221111110 0111111111
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
.+.-+.+.+.....-...|...-..............+.+|..++....+.+|.. ..+...++.+...+|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1112222222111111222222222223333333347889999999999988887 778888999999999999999999
Q ss_pred HHHHcc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 358 QMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAID 423 (595)
Q Consensus 358 ~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (595)
...+.. ....+.+-..+-..+...++.+-|...+.+++.. .+.....+..++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 843321 1122444444555566667666666666666543 33334566677888888899999999
Q ss_pred HHHHHHhcCCCChhhhhhHHHHhhhcc
Q 007634 424 AYEQCLKIDPDSRNAGQNRLLAMNYIN 450 (595)
Q Consensus 424 ~~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (595)
.+++.++.+|++.++...+..+++++.
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 999999999999999888877776663
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=9.2e-19 Score=163.98 Aligned_cols=244 Identities=18% Similarity=0.129 Sum_probs=191.5
Q ss_pred HhCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH
Q 007634 94 MQNMGRLAFDSFSEAVKLDP----QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169 (595)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~ 169 (595)
..+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.+ +..+|.++..
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-------~~~lg~~~~~ 110 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADA-------YNYLGIYLTQ 110 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHH
Confidence 33567889999999996444 336789999999999999999999999999999998776 7888888899
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
.|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..+.
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLK 189 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998742222 234456788999999998
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 007634 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 329 (595)
+.....+... + ..+.....++..... ..++.+.+.++...+..|...++|+.+|.++...|++++|+.+|+++++.
T Consensus 190 ~~~~~~~~~~--~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 190 QRYEKLDKEQ--W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHhhCCccc--c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8765543222 1 123444445533221 12334444445556667788899999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHcCC
Q 007634 330 NP-HCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 330 ~~-~~~~~~~~la~~~~~~~~ 349 (595)
+| +..+..+.+..+....++
T Consensus 266 ~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 266 NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCchHHHHHHHHHHHHHHHhh
Confidence 96 667766666666555444
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.86 E-value=1.4e-17 Score=158.55 Aligned_cols=345 Identities=17% Similarity=0.161 Sum_probs=281.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~ 162 (595)
..++..+.-.+..++|...++..+.+++..|++++.+...|..+..+|+-++|......++..++.+... |..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-------wHv 80 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-------WHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-------HHH
Confidence 4566777777889999999999999999999999999999999999999999999999999998887665 788
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
+|.++....+|++|+.+|+.++...|++...+..++.+..++++++.....-.+.++..|..-..|...+..+...|++.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 243 SAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 243 ~A~~~~~~al~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 319 (595)
.|...++...+.. |+.. ......+......+....|.+++|++.+..--...-+........+.++..++++++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~--~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKE--DYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHH--HHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9999988887665 3322 2223344444556666778888888887765444444455667789999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHH----------------------------------HHHcc-
Q 007634 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQ----------------------------------MALSI- 363 (595)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~----------------------------------~al~~- 363 (595)
...|...+..+|++...+..+-.++..-.+--+++ ..|. ..++.
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99999999999999776655544442111111111 1111 00000
Q ss_pred --------------------------------------C--------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 364 --------------------------------------K--------PNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 364 --------------------------------------~--------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+ |-. ...++.++.-+...|+++.|..+++.++
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 0 111 2345667888899999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
...|+.++.+...|.++...|+.++|..++..+.++|-.|.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 99999999999999999999999999999999999987654
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.86 E-value=3.6e-19 Score=176.36 Aligned_cols=380 Identities=19% Similarity=0.227 Sum_probs=300.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--------------------------HHhCCHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL--------------------------QMQNMGRLA 101 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--------------------------~~~g~~~~A 101 (595)
.......+.+......|.+|...+..+..... +-+.+..+..|+ ..+.+...|
T Consensus 399 ~sn~~akgl~~ie~~~y~Daa~tl~lv~~~s~-nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~a 477 (1238)
T KOG1127|consen 399 ASNQRAKGLAPIEANVYTDAAITLDLVSSLSF-NDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALA 477 (1238)
T ss_pred hhhhhhcchhHHHHhhchHHHHHHHHHHHhhc-CchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33355566666777778888777776665541 111111111111 223457789
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 007634 102 FDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (595)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (595)
...|-++++++|....++..+|.+|...-+...|..+|.++.++++.+..+ ....+..+....+++.|....-
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998777 5556667777899999999977
Q ss_pred HHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 007634 182 EALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 182 ~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 259 (595)
.+-+..|.. ...|..+|..|.+.++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 776666643 455677999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Q 007634 260 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHF--- 329 (595)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--- 329 (595)
...+..+..... .|.+.+|+..+...+...... .+.+...+..+...|-+.+|..++++.++.
T Consensus 631 y~~fk~A~~ecd-------~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 631 YGRFKEAVMECD-------NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred HHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 777666665555 568999999988887664433 344555555555555555555555554432
Q ss_pred --------------------------CC-----------------------------------------CCHHHHHHHHH
Q 007634 330 --------------------------NP-----------------------------------------HCAEACNNLGV 342 (595)
Q Consensus 330 --------------------------~~-----------------------------------------~~~~~~~~la~ 342 (595)
.| ..+..|+++|.
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 01 11345677777
Q ss_pred HHHH--------cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 007634 343 IYKD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (595)
Q Consensus 343 ~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (595)
.|+. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+..+|.....|.++|.++..
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 7765 2344689999999999999999999999998 666999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 007634 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (595)
Q Consensus 415 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (595)
..+++-|...|.++..++|.+...|....
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~A 891 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEA 891 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHH
Confidence 99999999999999999999987776543
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=1.1e-18 Score=160.22 Aligned_cols=206 Identities=20% Similarity=0.163 Sum_probs=188.9
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
++...|++++|+..+++++...+... ....+..+|.++...|++++|...+.+++..+|++..++..+|.++...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 99999999999999999998532211 1223677899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 255 (595)
|++++|...+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999999989899999999999999999999999888776554
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=8.3e-19 Score=146.12 Aligned_cols=205 Identities=22% Similarity=0.217 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (595)
.+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-------------- 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-------------- 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--------------
Confidence 445555555555555555555555555555555555555555555555555555555555555554
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Q 007634 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~ 349 (595)
+.+++.+.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|+
T Consensus 102 ---------------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 102 ---------------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred ---------------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 5555566666666666666666666666653 34456666677777777777
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
++.|.++|+++++.+|+.+.....++...+..|++..|..++++.....+-..+.+.....+-...|+-+.|-++=.+..
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777776666666556666666666667777777666666666
Q ss_pred hcCCCChh
Q 007634 430 KIDPDSRN 437 (595)
Q Consensus 430 ~~~p~~~~ 437 (595)
...|...+
T Consensus 235 r~fP~s~e 242 (250)
T COG3063 235 RLFPYSEE 242 (250)
T ss_pred HhCCCcHH
Confidence 66666554
No 73
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.5e-16 Score=143.36 Aligned_cols=393 Identities=15% Similarity=0.094 Sum_probs=305.7
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+...++..|+--..++++..|..+|++++..+..+...|+..+.+-++......|...+.+++.+-|.-...|+....+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35567888888889999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--------------------------HHHHHhHHHHHHhCChHHHHHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLA--------------------------IVLTDLGTSLKLAGNTQDGIQK 179 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a--------------------------~~~~~l~~~~~~~~~~~~A~~~ 179 (595)
-..+|+...|.++|++-++..|+. .++.... ..+...+..-...|+..-|...
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 899999999999999999998873 2222211 1234455556667777777777
Q ss_pred HHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHH---------------------------------------
Q 007634 180 YYEALKIDPHYA---PAYYNLGVVYSELMQYDTALGCYEKA--------------------------------------- 217 (595)
Q Consensus 180 ~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a--------------------------------------- 217 (595)
|+++++.-.++. ..+...|..-..++.++.|.-+|+-+
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 777776543321 22222333333344444444444333
Q ss_pred -----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhh---hhhcCCHHHHHHHH
Q 007634 218 -----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYY 289 (595)
Q Consensus 218 -----l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~ 289 (595)
++.+|.+.++|+..-.+....|+.+.-.+.|++++...|....-....-.+|.-+..+ .....+.+.+.+.|
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3356777788888888888899999999999999988776544333333333332222 22467899999999
Q ss_pred HHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 290 KKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 290 ~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
+.++++-|.. +.+|...|.....+.+...|.+.+..++-..|.+ ........+-.++++++.....|++-++..|
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 9999998864 6789999999999999999999999999999984 4455556677788999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AE-AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
.+..+|...|.+-..+|+.+.|...|+-|++...-+ ++ .|-..-..-...|.++.|...|++.|+..+... +|..
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 999999999999999999999999999999875433 22 344445556678999999999999999988765 5544
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-19 Score=162.94 Aligned_cols=278 Identities=19% Similarity=0.200 Sum_probs=239.2
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (595)
.+.-....|..++...+|..|+..+..+++..|+++..|.+.+.+++..|++++|.-..++.+++.|..+..+...++++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 34446667788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHH------------hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 007634 236 KNRGDLESAIACYERCL------------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (595)
Q Consensus 236 ~~~~~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 303 (595)
...++..+|...++..- .+.|.+... -.....-..-+.++...+++++|...--..+++++.+.+++
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~-pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE-PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC-chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 99998888887665221 111111100 00111122234455567899999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---- 367 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---- 367 (595)
+..|.++...++.+.|+..|++++.++|+.. +.+..-|.-.++.|++.+|.++|..++.++|++
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 9999999999999999999999999998763 456677888999999999999999999999986
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
...|.+++.+...+|+..+|+...+.+++++|....++...|.|+..++++++|.+.|+++++...+
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5578999999999999999999999999999999999999999999999999999999999998766
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.7e-17 Score=142.71 Aligned_cols=267 Identities=20% Similarity=0.211 Sum_probs=233.4
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKN 237 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~ 237 (595)
.|.-+...++.++|++.|..+++.+|...++...||.++...|..+.|+..-+..++. |+. .-+...+|.-|..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 3555566789999999999999999999999999999999999999999998876654 442 4578899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHh
Q 007634 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGE 312 (595)
Q Consensus 238 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~ 312 (595)
.|-++.|...|....+...--.. ++..+-.+|....++++|++..++..+..++. +..+..++..+..
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~-------AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEG-------ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 99999999999998765443333 34455566677899999999999999988775 4568889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 313 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
..+.+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..+|.++|+.++.+.++
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 778999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.++.+..++ +++...++.+-....-.+.|..++.+-+...|+-...
T Consensus 273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 999998887 5667778888888888899999999999999985433
No 76
>PLN03077 Protein ECB2; Provisional
Probab=99.84 E-value=4.4e-17 Score=176.98 Aligned_cols=359 Identities=10% Similarity=0.012 Sum_probs=280.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (595)
.+...+..+...|.+.|++++|..+|+++.. .+...|..+...|.+.|++++|++.|++..+.. |+. ..+..+-
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll 396 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVL 396 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHH
Confidence 3566777888999999999999999998743 356788999999999999999999999886643 544 3455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
..+...|++++|.+++..+.+....... .++..+...|.+.|++++|.+.|++..+ .+...|..+...|..
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRL 467 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 5778888999999999888876543221 2356677778888888888888887643 345678888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH-----------------------------------HHHHHHHHHHcCCHHHHHHHH
Q 007634 204 LMQYDTALGCYEKAALERPMYAEA-----------------------------------YCNMGVIYKNRGDLESAIACY 248 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~~~~~-----------------------------------~~~la~~~~~~~~~~~A~~~~ 248 (595)
.|+.++|+..|++.....+.+... ...+...|.+.|+.++|...|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 888888888888876532222222 223446778888888888888
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+.. +.+...|. .+...+...|+.++|++.|++..+.. |+ ..++..+-..+...|..++|..+|+..
T Consensus 548 ~~~----~~d~~s~n-------~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 548 NSH----EKDVVSWN-------ILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred Hhc----CCChhhHH-------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 775 33443444 44445556789999999999988753 43 455666777899999999999999999
Q ss_pred HhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 007634 327 FHFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (595)
Q Consensus 327 l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (595)
.+.. ..+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++.|++...
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 8543 234678999999999999999999999985 35554 6678778778888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
+..++.+|...|++++|.+..+...+.
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 999999999999999999999887653
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.2e-17 Score=144.15 Aligned_cols=275 Identities=19% Similarity=0.183 Sum_probs=241.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHH
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~ 194 (595)
+..|.-+.-.++.++|+..|..+++.+|...++ ...+|+.+...|..+.|+..-+..++. |+. ..+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 334566667789999999999999999988776 777888999999999999998777664 442 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (595)
..||.-|+..|-++.|...|....+...--..++..+..+|....+|++|++.-++..++.+... ...++..|..++.
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq 188 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHH
Confidence 89999999999999999999999887666778999999999999999999999999999988764 4567899999999
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Q 007634 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKA 353 (595)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A 353 (595)
.+....+.+.|...+.++++.+|+...+-..+|.+....|+|+.|++.++.+++.+|+. +++...+..+|...|+.++.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 78889999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
+..+.++.+..+. +.+...++..-....-.+.|..++.+-+...|+.-..+
T Consensus 269 ~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 269 LNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred HHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 9999999998776 45556677777777788899999999999999844333
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.84 E-value=7.2e-18 Score=163.44 Aligned_cols=245 Identities=23% Similarity=0.315 Sum_probs=207.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 257 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~- 257 (595)
.|....+...++..|...|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666677788999999999999999999999987 5555566667999999999999999999999987431
Q ss_pred cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 007634 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 329 (595)
....+...+.++.+++..|...|++++|..++++++++. |.-...+..++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 112233567788899999999999999999999998763 333557888999999999999999999999987
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007634 330 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (595)
Q Consensus 330 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (595)
++.-+..+.++|.+|..+|++++|.+.|++++++. +.....+..+|..+.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 23447789999999999999999999999999873 33366889999999999999999999999
Q ss_pred HHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 394 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 394 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
+..+ .|+....+.+|+.+|..+|++++|.++..+++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8876 4555678999999999999999999999998843
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=4.7e-18 Score=155.97 Aligned_cols=202 Identities=26% Similarity=0.291 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----------- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------
Confidence 566777777777777777777777777777777777777777777777777777777777666665543
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~ 348 (595)
..+..+|.++...|++++|+..+++++... +.....+..+|.++...|
T Consensus 100 ------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 100 ------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred ------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 444455555555666666666666665532 344556666777777777
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
++++|...++++++..|++...+..+|.++...|++++|..++++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777776766777777777777777777777776666
Q ss_pred HhcCC
Q 007634 429 LKIDP 433 (595)
Q Consensus 429 l~~~p 433 (595)
....|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 55543
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.83 E-value=1.3e-17 Score=161.64 Aligned_cols=240 Identities=25% Similarity=0.347 Sum_probs=203.6
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------R 221 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~ 221 (595)
.+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34666999999999999999999999998 5555566667999999999999999999999975 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC----
Q 007634 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---- 296 (595)
Q Consensus 222 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 296 (595)
|....++.+||.+|...|++++|..++++++++... .......++..+..++.++...+++++|..++++++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 445678999999999999999999999999987543 111223456677888888889999999999999998763
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 007634 297 ----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI- 363 (595)
Q Consensus 297 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 363 (595)
+..+..+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|.+.|.++..+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2346689999999999999999999999999873 334678899999999999999999999998876
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 364 ------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 364 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555678999999999999999999999999854
No 81
>PLN02789 farnesyltranstransferase
Probab=99.83 E-value=5.7e-18 Score=157.55 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=166.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
...+++++|+..+.++++++|.+..+|...+.++..+| ++++++..++++++.+|++..+|...+.++..++. .
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~-----~ 122 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP-----D 122 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----h
Confidence 34556777777777888888887778877777777777 56778888888888888777777776666655542 1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DKA 353 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---~~~----~~A 353 (595)
..++++.+++++++.+|++..+|...+.++...|++++|++++.++++.+|.+..+|..++.++... |.+ +++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 2356788888888888888888888888888888899999999999999999988998888887765 223 468
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 354 VECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
+.+..+++..+|++..+|..++.++.. .++..+|...+.+++...|+++.++..|+.+|...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 888889999999999999999998887 45567788999998888899899999999998763
No 82
>PLN02789 farnesyltranstransferase
Probab=99.81 E-value=3.3e-17 Score=152.49 Aligned_cols=210 Identities=11% Similarity=0.013 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-
Q 007634 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~- 207 (595)
++.++|+..+.+++.++|++..++ ...+.++...| ++++++..++++++.+|++..+|...+.++...|+.
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW-------~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVW-------HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHH-------HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 444555555555555555554442 22233333333 345556666666666666666666666555555542
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 007634 208 -DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (595)
Q Consensus 208 -~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (595)
++++.+++++++.+|.+..+|...+.++...|+++++++++.++++.+|.+..+|...+.++..++..-......++++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666555544321100111245677
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.++..
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 77778888888888888888888776 3445667777777777777777777777777764
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=9.3e-16 Score=135.55 Aligned_cols=364 Identities=14% Similarity=0.050 Sum_probs=211.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (595)
+-++...+|..|+.+++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+.+.+.-+.+.+.+++.+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 345678889999998887765544333 5667788899999999999999988888766677888889999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHH--------------------HH---HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 135 AAESYHKALSADPSYKPAAECL--------------------AI---VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 135 A~~~~~~~l~~~~~~~~~~~~~--------------------a~---~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
|.....++ |+++-....+ .. -...++.+.+....|++|++.|.+++..+|+..
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 88776655 3322211110 00 122345555666677777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cc------------
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NF------------ 258 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~------------ 258 (595)
..-..++.+|.++.-|+-+.+.+.-.+...|+.+-+...++...++.=+-..|..-.+....-.. ..
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 77777777777777777777777777777777777666666655554222222222222111100 00
Q ss_pred ------------HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 259 ------------EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 259 ------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+.....+..+-.++...|..+++..+|....+. .+|..+.-+...|.+....|+--...+.++-+
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 011111222333344445555666666555443 35556666666666666555543333333222
Q ss_pred Hh---h------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 327 FH---F------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 327 l~---~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
-+ + .-+.......++.+++-..++++.+.++...-...-++....+++|.++...|++.+|.+.|-+.-..
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 21 1 11112233444555555556666666665555555555566666666666666666666666554332
Q ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 398 N-PTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 398 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
. .+.......||.||...|.++-|.+.+-
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 2 1222334456666666666666665543
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.79 E-value=7.8e-16 Score=150.52 Aligned_cols=317 Identities=14% Similarity=0.021 Sum_probs=197.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 154 (595)
+|+.+.++..+|.++...|+.+.+...+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 78888999999998888898888888888888777644 456777788888899999999999999998888775432
Q ss_pred HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007634 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (595)
Q Consensus 155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 234 (595)
. +..+..+| ...+....+.+.+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 2 11222222 1234444555555444455677777888888899999999999999999999999998888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh
Q 007634 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGE 312 (595)
Q Consensus 235 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~ 312 (595)
+...|++++|+.++++++...|..+.. ....+..++.++...|++++|+..+++++...|. ........+
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----- 229 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSML---RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA----- 229 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcch---hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH-----
Confidence 999999999999999988887653211 1122333444444455555555555555433331 110000000
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH--H-HHHHccCC--CCHHHHHHHHHHHHhcCCHHHH
Q 007634 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC--Y-QMALSIKP--NFSQSLNNLGVVYTVQGKMDAA 387 (595)
Q Consensus 313 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~--~-~~al~~~~--~~~~~~~~la~~~~~~g~~~~A 387 (595)
.+...+...|....+..+ + .......+ .........+.++...|+.++|
T Consensus 230 --------------------------~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a 283 (355)
T cd05804 230 --------------------------SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDAL 283 (355)
T ss_pred --------------------------HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHH
Confidence 111111112211111111 0 00000001 1112223456666666677777
Q ss_pred HHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 388 AEMIEKAIAANPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 388 ~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
...++........ ........+.++...|++++|...+..++.+.
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6666665443211 24556667777778888888888888877765
No 85
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.5e-14 Score=132.89 Aligned_cols=349 Identities=15% Similarity=0.123 Sum_probs=214.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
-|+..+..+.-+...|...|.--..++++..|...|++|+..+..+...|...+.+-++......|...+.+++.+-|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 45555666666788999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007634 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (595)
Q Consensus 150 ~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 229 (595)
... |+.....-...|+...|.+.|++-++..|+ ..+|......-.+.+..+.|...|++-+-..|+ ...|.
T Consensus 141 dql-------WyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wi 211 (677)
T KOG1915|consen 141 DQL-------WYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWI 211 (677)
T ss_pred HHH-------HHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHH
Confidence 665 444445555668888888888888887776 344444444444444455555555554444443 33344
Q ss_pred HHHHHHH-------------------------------------HcCCHHHHHHHHHHHHhcCCCcH--HHHhhHHHHHH
Q 007634 230 NMGVIYK-------------------------------------NRGDLESAIACYERCLAVSPNFE--IAKNNMAIALT 270 (595)
Q Consensus 230 ~la~~~~-------------------------------------~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~ 270 (595)
..+..-. .++.++.|...|+-++..-|.+. ..+......-.
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 4444444 44455555555555555555441 11111100000
Q ss_pred HhhhhhhhcCCHHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----------------
Q 007634 271 DLGTKVKLEGDINQGV-----AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH----------------- 328 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~-----~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----------------- 328 (595)
..|+ ..-.++++ -.|++.+..+|.+.++|+..-.+....|+.+.-.+.|++++.
T Consensus 292 qfGd----~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 292 QFGD----KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL 367 (677)
T ss_pred Hhcc----hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 1110 00111111 123333334455555555555555555555555555555554
Q ss_pred ---------------------------hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 329 ---------------------------FNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 329 ---------------------------~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
+-|.. +.+|...|.....+.+...|.+.+-.|+-..|.+ ........+
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIel 446 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHH
Confidence 43332 3444444444455555555555555555555542 233333444
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 378 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
-.++++++.....|++.++..|.+..+|...|.+-..+|+.+.|...|+-|++..
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 5566677777777777777777777778888887778888888888887777653
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.78 E-value=1.2e-15 Score=149.23 Aligned_cols=307 Identities=17% Similarity=0.094 Sum_probs=191.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
+|+.+.++..+|.++...|+.+++...+.++....+.+.... ......+..+...|++++|...++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER----ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 688888888899888888888888888888887777654321 1234456667777888888888888888888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAA----LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
.++.. +..+...|++..+.....+++ ...|.....+..+|.++...|++++|+..++++++..|++
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--------- 147 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--------- 147 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------
Confidence 66554 444444443333333333332 3445555666666677777777777777777766666654
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHH
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVI 343 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~ 343 (595)
..++..+|.++...|++++|+.++++++...|..+ ..+..+|.+
T Consensus 148 --------------------------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 148 --------------------------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred --------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 44455566666666667777777766666654322 245567777
Q ss_pred HHHcCCHHHHHHHHHHHHccCCC--CHHHHH---HHHHHHHhcCCHHHHHHH--H-HHHHHhCCC--cHHHHHHHHHHHH
Q 007634 344 YKDRDNLDKAVECYQMALSIKPN--FSQSLN---NLGVVYTVQGKMDAAAEM--I-EKAIAANPT--YAEAYNNLGVLYR 413 (595)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~--~~~~~~---~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~ 413 (595)
+...|++++|+..|++++...|. ...... .+...+...|....+..+ + .......+. ........+.++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 77888888888888877665552 111111 222233334433333332 1 111111122 2333346888899
Q ss_pred HcCCHHHHHHHHHHHHhcCCC---C----hhhhhhHHHHhhhccCCCcHHHHHHHHHH
Q 007634 414 DAGSISLAIDAYEQCLKIDPD---S----RNAGQNRLLAMNYINEGHDDKLFEAHRDW 464 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (595)
..|+.++|...+.......-. . ..+....+.++.+...|+.....+.....
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999887664322 2 23455567788888999988877665443
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.9e-15 Score=132.45 Aligned_cols=375 Identities=15% Similarity=0.096 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------------cCC-
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------LDP- 113 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 113 (595)
...+..|.+++..|+|++|+..|+-+...+.-+.+.+..+|.|++-+|.|.+|.....++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 44566899999999999999999999988777889999999999999999999887665422 111
Q ss_pred -----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 007634 114 -----------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (595)
Q Consensus 114 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (595)
+..+-...++.+.+..-.|++|++.|++++.-+|+.... -..++.||++..-++-+.+.+.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al-------NVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL-------NVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh-------HHHHHHHHHhcchhhhHHHHHHH
Confidence 122344667777788889999999999999988875443 45677888889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------HHhCC----CCHHHHHH
Q 007634 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA----------------------------ALERP----MYAEAYCN 230 (595)
Q Consensus 183 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------l~~~~----~~~~~~~~ 230 (595)
.++..|+++.+...++...++.=+-..|....... ++.-| .-|++..+
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 99999999998888887776643322222222221 11222 14688899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Q 007634 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGV 308 (595)
Q Consensus 231 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 308 (595)
+...|.++++..+|+...+. ++|..+.-+...+.+...+|.-.-......-|...|+-+-+.. -+.......++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 99999999999999988764 7898888888888888888866555555666666655443221 112234556777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHH
Q 007634 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAA 387 (595)
Q Consensus 309 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A 387 (595)
+++...++++.+.++...-....++....++++.+....|++.+|.+.|-+.-... .+.......+|.||...+.++-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 88888899999999999888888888999999999999999999999998765544 23355667899999999999999
Q ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 388 AEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 388 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
-..+-+. ..| +....+..+|....+.+++--|.+.|...-.++|+.
T Consensus 448 W~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 8776543 122 223456678888999999999999999988888864
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.75 E-value=6.4e-16 Score=141.14 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=157.6
Q ss_pred ccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH-
Q 007634 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC- 117 (595)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 117 (595)
+.....++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34457889999999999999999999999999999999876 68899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 007634 118 --AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (595)
Q Consensus 118 --~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (595)
+++.+|.++... |++++|+..|++++..+|++......+ ..++.... .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~----------- 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R----------- 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H-----------
Confidence 789999999876 889999999999999999986653222 11111110 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (595)
Q Consensus 188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 256 (595)
.......+|.++...|++.+|+..++++++..|+. +.+++.+|.++...|++++|..+++.+....|
T Consensus 165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 01223577888999999999999999999887654 57889999999999999999998888776655
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.74 E-value=1.2e-13 Score=136.29 Aligned_cols=276 Identities=16% Similarity=0.066 Sum_probs=209.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
..+.++-.+.++...|++++|++.+++....-.+....+-..|.++..+|++++|...|...++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 35678889999999999999999999988888889999999999999999999999999999999999999999998887
Q ss_pred HHcC-----CHHHHHHHHHHHHhcCCCCHHHH------------HHHHHH-------------HHHhHHHHHHhCChHHH
Q 007634 127 KDEG-----RLVEAAESYHKALSADPSYKPAA------------ECLAIV-------------LTDLGTSLKLAGNTQDG 176 (595)
Q Consensus 127 ~~~g-----~~~~A~~~~~~~l~~~~~~~~~~------------~~~a~~-------------~~~l~~~~~~~~~~~~A 176 (595)
.... +.+.-..+|+......|...... ...+.. +..+-..|....+..-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 4333 56777888888877777632221 111111 11222222222222222
Q ss_pred HHHHHHHHhh---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 177 IQKYYEALKI---------------DPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 177 ~~~~~~~l~~---------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
..++...... .|.. ..+++.++..|-..|++++|+.+++++++..|..++.+...|.++...|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 2222222211 0111 3466889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHH
Q 007634 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---------ADAMYNLGVAY 310 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~ 310 (595)
++.+|...++.+-.+++.+-......+..+ .+.|+.++|.+.+......+.+. .......|.+|
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~-------LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYL-------LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHH-------HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765544444444 44789999999988876654211 12335679999
Q ss_pred HhcCCHHHHHHHHHHHHhh
Q 007634 311 GEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~ 329 (595)
.+.|++..|+..|..+.+.
T Consensus 316 ~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999988876
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.73 E-value=1.8e-14 Score=147.38 Aligned_cols=160 Identities=12% Similarity=0.048 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 007634 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (595)
Q Consensus 283 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (595)
.+++..........|.+.+++.+||.+....|.+++|...++.++++.|++..+...++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33444444445567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 363 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
.+|+++..++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.....++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776555554
No 91
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=2.7e-13 Score=122.75 Aligned_cols=298 Identities=14% Similarity=0.058 Sum_probs=202.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY 201 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~ 201 (595)
|..-+..|+|.+|.....+.-+..+...-+ +..-+......|+++.+-.++.++-+..++ ...+....+.+.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~-------~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLA-------YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHH-------HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 334445566666666666655544443222 344445555566666666666666666333 345556666677
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhhhhhhhcC
Q 007634 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 280 (595)
...|+++.|.....++++..|.++.++.....+|...|++.+...++.+.-+..--+.. ....--.++..+=+-....+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777777777777777777777777777777777777777666665544322211 11111111111111111112
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
..+.-...++..-..-..++.+...++.-+...|+.++|.+..+.+++..-+.. ....++ ...-+++..=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence 222223344444444455688888999999999999999999999998755433 222222 23567889999999999
Q ss_pred HccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 361 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 778899999999999999999999999854
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.9e-13 Score=129.34 Aligned_cols=337 Identities=15% Similarity=0.058 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l 163 (595)
.++.--..+...|+|++|++...+++...|++..+....-.+..+.++|++|+...++-......+. ..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~--------~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS--------FFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch--------hhHHH
Confidence 3333344566789999999999999999999999999999999999999999955554322111111 12677
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Q 007634 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER---------------------- 221 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------- 221 (595)
+.|.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+.+++.+
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 889999999999999998 4566677788999999999999999999999885422
Q ss_pred --------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 222 --------P-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 222 --------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
| ++.+.+++.+.++...|+|.+|++.+++++++ +.........+..+...++.++...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1 14578899999999999999999999999443 333355666777888888889999999999
Q ss_pred HHHHHHHHHhhCCCCHHHH-------------------------------------------------HHHHHHHHhcCC
Q 007634 285 GVAYYKKALYYNWHYADAM-------------------------------------------------YNLGVAYGEMLK 315 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~-------------------------------------------------~~la~~~~~~~~ 315 (595)
|...|...++.+|.+.... .+.+.+.+..+.
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999998876553211 111111122222
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
.+.+.+.....-...|....-.............+.+|.+.+....+.+|.+ ..+...++.+...+|+++.|++.+...
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222221111111122221111222222233337888999999988888887 678888999999999999999999833
Q ss_pred H--------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 395 I--------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 395 l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+ +.. ..+.+-..+-.++...++.+.|...+.+++...
T Consensus 403 ~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 403 LESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred hhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 3 222 234555566667778887777777777777643
No 93
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.71 E-value=8.1e-16 Score=138.60 Aligned_cols=294 Identities=22% Similarity=0.273 Sum_probs=219.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYY 195 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~ 195 (595)
-|.-+++.|++...+.+|+.+++...++.. .+..+|..+|+.|...++|++|+++-..-+.+ .-..+..--
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~---tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLS---TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHH---HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 366677888888888888888887766543 36667888899999999999988875443322 223455667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGD--------------------LESAIACYE 249 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~ 249 (595)
++|.++.-.|.|++|+.+..+-+.... ....+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 889999999999999988877765432 235788999999987764 234455555
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFY 323 (595)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~ 323 (595)
.-+++..... .....+.++..+|+.|...|+++.|+..-+.-+.+.... -.++.++|.++.-.|+++.|+++|
T Consensus 180 eNL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 180 ENLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 5444433322 234557788999999999999999999888777664432 347889999999999999999999
Q ss_pred HHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 324 ELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 324 ~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
++.+.+. ...+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||..+...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9887652 22366788999999999999999999998887643 34668899999999999999999998
Q ss_pred HHHHHhC-----CC-cHHHHHHHHHHHHHcCCHH
Q 007634 392 EKAIAAN-----PT-YAEAYNNLGVLYRDAGSIS 419 (595)
Q Consensus 392 ~~al~~~-----p~-~~~~~~~la~~~~~~g~~~ 419 (595)
++.+++. +. ...+..++...-..+|..+
T Consensus 339 e~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 339 ELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 8887652 22 2346667777666666543
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=1e-12 Score=119.01 Aligned_cols=298 Identities=14% Similarity=0.011 Sum_probs=210.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGIL 125 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 125 (595)
.+......|..-+..|+|.+|.....+.-+..+...-++..-+.+.-++|+++.|-.++.++-+..++ ........+.+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 34556667888888999999999999988877777788888899999999999999999999998554 45678888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHH---HHHHHHH--H
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---AYYNLGV--V 200 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~la~--~ 200 (595)
....|+++.|..-..++++..|.++.. +.....+|...|++.+...++.+.-+..--+.. -+-+.+. +
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~v-------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEV-------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHH-------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 555667778889999999998887765432211 1111111 1
Q ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 201 YSELMQ---YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 201 ~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
+.+.++ .+.-..+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. +...+-. .
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~-----l 305 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR-----L 305 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-----c
Confidence 112222 22222344444334445678888888888999999999999999887755432 1111111 1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
.-++...-++..++.++..|+++..+..+|.++.+.+.|.+|..+++.+++..|+ ...+..+|.++.+.|+..+|.+++
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHH
Confidence 2356666666666666666666666666666666666666666666666665554 455666666666666666666666
Q ss_pred HHHHc
Q 007634 358 QMALS 362 (595)
Q Consensus 358 ~~al~ 362 (595)
++++.
T Consensus 385 ~e~L~ 389 (400)
T COG3071 385 REALL 389 (400)
T ss_pred HHHHH
Confidence 66653
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=6.4e-15 Score=134.54 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=146.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007634 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (595)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 153 (595)
.++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++...
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456788999999999999999999999999999999876 5789999999999999999999999999999877641
Q ss_pred HHHHHHHHHhHHHHHHh--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007634 154 ECLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (595)
Q Consensus 154 ~~~a~~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 225 (595)
.+++.+|.++... |++++|++.+++++..+|++..++..+..+....+ . ..
T Consensus 108 ----~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~ 166 (235)
T TIGR03302 108 ----YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LA 166 (235)
T ss_pred ----HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HH
Confidence 2356666666654 78999999999999999998766543332221110 0 01
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHhhHHHHHHHhhhhhhhc
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKVKLE 279 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~l~~~~~~~ 279 (595)
.....+|.++...|++.+|+..+++++...|+. ..++..++.++..+|+.....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 234578899999999999999999999997764 478899999999988765443
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.68 E-value=2.7e-14 Score=146.84 Aligned_cols=288 Identities=14% Similarity=0.090 Sum_probs=224.7
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 76 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
..+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++... .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------ 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------ 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc------
Confidence 357889999999999999999999999999999999999999999999999999998877766 555554443
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (595)
.++ .+++++...+...+++..+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..|
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 344 5666666666667888889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
... +.++|+.++.+++... ...+++.++.+++.+.+..+|.+.+.+..+-......-.
T Consensus 161 ae~-dL~KA~~m~~KAV~~~---------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRF---------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHH---------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 999 9999999999998651 224588999999999999999987765544333222211
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+..+ ...+.-+-..|...+++++++.+++.+++.+|.+..+...++.+|. +.|.. ...++..+
T Consensus 219 ~~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l 281 (906)
T PRK14720 219 FTRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYL 281 (906)
T ss_pred cchh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHH
Confidence 2222 3455556677788889999999999999999999999999999887 33333 44444444
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
++. .+-..-..+..|+..|++.+..+|.+--
T Consensus 282 ~~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 282 KMS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred HHh-----------ccccCCccHHHHHHHHHHHeeecCCCEE
Confidence 431 1111124567888888888888887643
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=9.7e-16 Score=126.32 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4555666665553 4455666666666666666666666666666666666666666666666666666666666666
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
++.+++++|.++..+|++++|+..|++++++.|+++..+.++..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 66666666666666666666666666666666666666555433
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.68 E-value=6.3e-13 Score=146.69 Aligned_cols=385 Identities=12% Similarity=-0.016 Sum_probs=275.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHc
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKDE 129 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~ 129 (595)
.-..|..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+- .....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 344566788899999888766554111 1112445556777788888887777665431 11123455667788888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 007634 130 GRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYS 202 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~~~--~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~ 202 (595)
|++++|...+..+....+... ......+.+...++.++...|++++|...+++++...+.. ..+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999998876533211 0111123445567888899999999999999999864442 235677899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhhhh
Q 007634 203 ELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTK 275 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~ 275 (595)
..|++++|...+++++..... ...++..+|.++...|++++|...+++++........ .......++..++.+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 999999999999999875332 1346678899999999999999999999876432210 001112234456777
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHH
Q 007634 276 VKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVI 343 (595)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~----~~la~~ 343 (595)
+...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.+.. .... ......
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 78889999999999998875322 24466778999999999999999999997763321 1111 112344
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHH
Q 007634 344 YKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYR 413 (595)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~ 413 (595)
+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5568999999999887665332222 2256789999999999999999999988621 23467889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCh
Q 007634 414 DAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
..|+.++|...+.+++++.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999876543
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.67 E-value=2e-15 Score=124.41 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788899988874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876554
No 100
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.67 E-value=1.7e-15 Score=136.52 Aligned_cols=270 Identities=24% Similarity=0.310 Sum_probs=210.4
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAAL------ERPMYAEAYCN 230 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~ 230 (595)
..-|.-+.+.|+....+..|+.+++...++ ..+|..+|.+|+.+++|++|+++-..-+. ..-..+..--+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 345677788899999999999999997775 45678899999999999999997654332 22234566778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC--------------------HHHHHHHHH
Q 007634 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYYK 290 (595)
Q Consensus 231 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 290 (595)
+|.++..+|.|++|+.+..+-+.+...-. ....-+.+++++|.+|...|+ ++.|.++|.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999988877654432 223345566677766665443 455666666
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 291 KALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQ 358 (595)
Q Consensus 291 ~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (595)
.-+++.... ..++-++|..|+.+|+|+.|+..-+.-+.+... .-.++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 666554332 346788999999999999999998877776432 24688999999999999999999999
Q ss_pred HHHccC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 359 MALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 359 ~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
+.+.+. ...+...+.||..|.-..++++|+.++.+-+.+.. ....+++.||..+..+|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 987653 22356789999999999999999999999887632 235789999999999999999999988
Q ss_pred HHHhc
Q 007634 427 QCLKI 431 (595)
Q Consensus 427 ~al~~ 431 (595)
+.+++
T Consensus 340 ~hl~~ 344 (639)
T KOG1130|consen 340 LHLRS 344 (639)
T ss_pred HHHHH
Confidence 88765
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.66 E-value=8.1e-13 Score=130.40 Aligned_cols=312 Identities=12% Similarity=0.023 Sum_probs=225.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
+.+.++....++...|++++|++.+++....-.+....+...|.++..+|++++|...|...+..+|++...+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778888999999999999999999998888999999999999999999999999999999999999988755544433
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
.... -....+.+.-...|++.....|....... +...+..-..+.. +..++...+.. .-|.....+-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChh
Confidence 2111 01123567778888888888877433322 2222222223333 33344444433 45666666666666444
Q ss_pred CHHHHHHHHHHHHhc---CCC----c---HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 240 DLESAIACYERCLAV---SPN----F---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (595)
Q Consensus 240 ~~~~A~~~~~~al~~---~~~----~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 309 (595)
+..-....+...... ... . ......+.++++.++..+...|++++|+++++++++..|..++.+...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333332221 100 0 111122345667777777778899999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CC-------HHHHHHHHHHHHh
Q 007634 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NF-------SQSLNNLGVVYTV 380 (595)
Q Consensus 310 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~-------~~~~~~la~~~~~ 380 (595)
+...|++.+|...++.+-.+++.+-.+....+..+.+.|+.++|.+.+......+- .. .+.....|.+|.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888999999999999999998887765542 11 2344567889999
Q ss_pred cCCHHHHHHHHHHHHHh
Q 007634 381 QGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~ 397 (595)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999999999888776
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=6.1e-13 Score=115.25 Aligned_cols=360 Identities=16% Similarity=0.142 Sum_probs=247.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (595)
..+.+..+|.+|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|......+..+..+++.+.+..|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----------------CCCCH----HHH-----HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 007634 136 AESYHKALSA----------------DPSYK----PAA-----ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (595)
Q Consensus 136 ~~~~~~~l~~----------------~~~~~----~~~-----~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (595)
+......... ..++. ... ..-+....+.|.+.++.|+++.|++-|+.+++...-.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 8877655431 00000 000 0112345667778888899999999999999988888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC----------------C---------HHHHHHHHHHHHHcCCH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALE----RPM----------------Y---------AEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~----------------~---------~~~~~~la~~~~~~~~~ 241 (595)
+..-++++.++++.|+++.|+++..+.++. .|. + .+++...+-++++.+++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 888889999999999999999888777653 232 1 24566677788888898
Q ss_pred HHHHHHHHHHHhcCCCc-----HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 007634 242 ESAIACYERCLAVSPNF-----EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 316 (595)
+.|.+.+.. +.|.. +....+++.. + ..+++.+...-+.-.+.++|-..+.+.++-.+|++..-+
T Consensus 258 eAA~eaLtD---mPPRaE~elDPvTLHN~Al~--n------~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 258 EAAQEALTD---MPPRAEEELDPVTLHNQALM--N------MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred HHHHHHhhc---CCCcccccCCchhhhHHHHh--c------ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 888776543 33332 2222222221 1 145677778888888888888888888888888888777
Q ss_pred HHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHccCCCCHHHHHHHH-HHHHh--cC---CH
Q 007634 317 DMAIVFYELAFHFNPHC-----AEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYTV--QG---KM 384 (595)
Q Consensus 317 ~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~--~g---~~ 384 (595)
+-|-..+.+ +|+. ....+.+-..+. ..-..++|.+-+...-.. ...-+..++ .+... .+ ..
T Consensus 327 ~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 327 DLAADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHH
Confidence 777665533 3332 122233333222 234555555544433221 111111111 11111 11 12
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.+|++.|++++++. ..+....+++|+...++..+.+.|+...+...++.
T Consensus 400 R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 400 RKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 34555666666542 44677889999999999999999999988877654
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=5.4e-14 Score=122.43 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=130.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353 (595)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 353 (595)
-.|...|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.++...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34566778777644432221 1110 111367789999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 354 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+..|++++++.|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++.+|.++...|++++|+.+++++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67787 59999999999999999999999999999999999999999999999
Q ss_pred cCCCChh
Q 007634 431 IDPDSRN 437 (595)
Q Consensus 431 ~~p~~~~ 437 (595)
++|.+.+
T Consensus 173 l~~~~~~ 179 (198)
T PRK10370 173 LNSPRVN 179 (198)
T ss_pred hCCCCcc
Confidence 9988653
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=2.1e-13 Score=115.53 Aligned_cols=175 Identities=17% Similarity=0.121 Sum_probs=163.2
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (595)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 355 (595)
....++..-|..++++.....|++..+....|..+...|++++|+++|+..++-+|.+..++...-.+...+|+.-+|++
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 34467999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 007634 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKID 432 (595)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 432 (595)
.+...++..+.+.++|..++.+|...|++++|.-++++.+-++|.++-.+..+|.+++-+| +.+-|.++|.++++++
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998877 6788999999999999
Q ss_pred CCChhhhhhHHHHhhhcc
Q 007634 433 PDSRNAGQNRLLAMNYIN 450 (595)
Q Consensus 433 p~~~~~~~~~~~~~~~~~ 450 (595)
|.+..++....++.+.+.
T Consensus 222 ~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 222 PKNLRALFGIYLCGSALA 239 (289)
T ss_pred hHhHHHHHHHHHHHHHHH
Confidence 988888888777666654
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.61 E-value=5.4e-12 Score=139.37 Aligned_cols=348 Identities=13% Similarity=-0.019 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---------cHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 118 (595)
..+...+..+...|++..+..+++.+-. ....++......+.++...|++++|...+..+....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 4445567777888888887777665411 11234456677888889999999999999988764321 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC------CHH
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~ 192 (595)
...++.++...|++++|...+++++...+.... ...+.....+|.++...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788889999999999999999986554322 223344677888999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 264 (595)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++......... .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~ 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ--Q 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch--H
Confidence 5678899999999999999999999875221 23345678899999999999999999998875432211 1
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---
Q 007634 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--- 334 (595)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~--- 334 (595)
....+..++.+....|++++|...+.++....... .... ......+...|+.+.|...+.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23456667888888999999999999987653321 1111 1122445568899999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 335 -EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 335 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 2256789999999999999999999987632 23457888999999999999999999999998654
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.60 E-value=1.9e-13 Score=140.67 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=185.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH
Q 007634 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (595)
Q Consensus 186 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 265 (595)
.+|.+..++..+...+...+++++|+...+.+++..|+....++.+|.++.+.+++.++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 37888999999999999999999999999999999999999999999999999998887766 666555543
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
.++ .+++++...+...+.+..+++.+|.+|-.+|+.++|...|+++++.+|+++.+++++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 244 55566666666677788899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH--------------------H
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------------------Y 405 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------~ 405 (595)
.. +.++|++++.+|+.. +...+++.++.+++.+.+..+|++.+. +
T Consensus 162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 99 999999999999876 666778888888888888888876543 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 007634 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (595)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (595)
.-+-..|...+++++++.+++.+++++|+|..++....
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 22337788889999999999999999999988877753
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.60 E-value=1.5e-13 Score=119.60 Aligned_cols=124 Identities=18% Similarity=0.149 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 355 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-~~~~~--~~~A~~ 355 (595)
.++.++++..+++++..+|++.+.|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
.++++++.+|++..++..+|..+...|++++|+.+++++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999988654
No 108
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=2.3e-11 Score=116.43 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
-+..++...+.+..+|+...-...|.+++..-|- +..+|-..-......+-.+-++..|++.++..|...+ ....
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie 177 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIE 177 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHH
Confidence 3567888889999999999999999999988773 4456666666667778888999999999999997643 3345
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHH-------------------------------HHHHHHHHhHHH
Q 007634 125 LYKDEGRLVEAAESYHKALSAD-------PSYKPAAE-------------------------------CLAIVLTDLGTS 166 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~-------------------------------~~a~~~~~l~~~ 166 (595)
.+...+++++|.+.+...+..+ +.+...+. .++.+|..|+..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6777889999988888776432 12222211 234567778888
Q ss_pred HHHhCChHHHHHHHHHHHhh
Q 007634 167 LKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~ 186 (595)
|.+.|.+++|...|++++..
T Consensus 258 YIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 88999999999988888765
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=6.7e-12 Score=106.59 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=144.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 44445666667777888899999999999988888999999999999999999999999999999999988876555433
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
.+... +|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|-++..+..+|.+++.
T Consensus 128 Ailka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 128 AILKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33333 45666888888888888888888888888888888888888888888888888888888888887777
Q ss_pred cC---CHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 347 RD---NLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 347 ~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
+| ++.-|.++|.++++++|.+...++.+-.+
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 66 56677788888888888766666655444
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.57 E-value=7e-13 Score=113.79 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (595)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 143 (595)
...+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666677778889999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 144 ~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
...|++... +..+|.+|.+.|+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.
T Consensus 128 ~l~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 128 RLAPTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred ccCCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 999999887 7888888888999999999999999999999999999999999999999999999999999898
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 224 YAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 224 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
+..+..+++.+....|++++|.....+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999999999999999999999887655
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.57 E-value=7.1e-13 Score=113.76 Aligned_cols=148 Identities=23% Similarity=0.249 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..++++....|++.++|..+|.+|.+.|++++|...|.+
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~q 159 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQ 159 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHH
Confidence 34445555555555555555566666677777777777777777777777777777777777777777777777777777
Q ss_pred HHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
++++.|..+.+..|+|..+.-.|+++.|..++..+....+.+..+..+|+.+...+|++++|...-.+
T Consensus 160 Al~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 160 ALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 77777777777777777777777777777777777776666777777777777777777777765443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.55 E-value=5.7e-13 Score=129.38 Aligned_cols=226 Identities=19% Similarity=0.145 Sum_probs=191.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
|........++.++...|-...|+..+++ ...|-....+|...|+..+|.....+-++. |.++.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~~------- 458 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEK-DPDPR------- 458 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcch-------
Confidence 33456677899999999999999999998 467788889999999999999999998884 44433
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
.|..+|++.....-+++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 3444554444444566666655543 3456777788888889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
++++.|.++|..++.++|++.++|.+++..|...|+..+|...++++++.+-++..+|.|.-.+..+.|.+++|++.|.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHhcCCCC
Q 007634 428 CLKIDPDS 435 (595)
Q Consensus 428 al~~~p~~ 435 (595)
.+.+.-+.
T Consensus 613 ll~~~~~~ 620 (777)
T KOG1128|consen 613 LLDLRKKY 620 (777)
T ss_pred HHHhhhhc
Confidence 98765433
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=2e-13 Score=112.66 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=98.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|..++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
++..++.+|.++...|++++|+..|+++++++|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 88888888888888888888888888888888877654
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.52 E-value=1.3e-12 Score=134.03 Aligned_cols=148 Identities=8% Similarity=-0.050 Sum_probs=104.3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 73 IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 73 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
......|.+++++..+|.+....|.+++|+..++.+++..|++..++..++.++.+.+++++|+..+++++...|++...
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 33445666777777777777777777777777777777777777777777777777777777777777777777777665
Q ss_pred HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007634 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227 (595)
Q Consensus 153 ~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 227 (595)
+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++....-...
T Consensus 157 -------~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 157 -------ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred -------HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 55555566666777777777777777777777777777777777777777777777777665543333
No 115
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=1.7e-09 Score=104.01 Aligned_cols=373 Identities=17% Similarity=0.149 Sum_probs=250.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCHHH-----HHHHHHHHHHhC-------------CHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEA-----HIGKGICLQMQN-------------MGRLAFDSFS 106 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~-----~~~la~~~~~~g-------------~~~~A~~~~~ 106 (595)
+..+..+|..|.+.|.+++|...|++++..-- +...+ .+.-..+...++ +.+-....|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 45677899999999999999999999987532 22111 111111111111 1223344444
Q ss_pred HHH------------HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhHHHHHHhCCh
Q 007634 107 EAV------------KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKLAGNT 173 (595)
Q Consensus 107 ~al------------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~a~~~~~l~~~~~~~~~~ 173 (595)
..+ ..+|++..-|.....++ .|+..+-+..|..++. .+|.-. .-....++...|..|...|+.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcH
Confidence 433 45777777777665554 6778888888887765 455533 223455688888888888888
Q ss_pred HHHHHHHHHHHhhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHH
Q 007634 174 QDGIQKYYEALKID-P---HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM------------------YAEAYCNM 231 (595)
Q Consensus 174 ~~A~~~~~~~l~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~l 231 (595)
+.|...|+++.+.+ + +-..+|...|..-....+++.|+++.+++...-.. +..+|..+
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 88988888888763 2 24778888888888888888888888887643211 24577888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHH---
Q 007634 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNL--- 306 (595)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l--- 306 (595)
+.+....|-++.....|++.+++.--.|....+.+..+.. ...++++.+.|++.+.+.+ .-.++|...
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe-------h~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-------HKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 8888888888888888888888877666665555554444 5678888888888888764 344554433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc---
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--- 381 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--- 381 (595)
...-+...+.+.|..+|+++++..|.. -.++...+.+-..-|--..|+..|+++-..-+.. -.+.+=.+|...
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae 634 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHH
Confidence 223333446888888999998887632 2355566777777788888888888876553321 111111222211
Q ss_pred -CCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 382 -GKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 382 -g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
=-.......|+++++.-|+. .+.....+..-.++|..+.|...|.-+-++.|
T Consensus 635 ~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred HhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 11234567788888887765 35566778888888889999888888888754
No 116
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.3e-13 Score=119.02 Aligned_cols=114 Identities=29% Similarity=0.473 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
++-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34556677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhh
Q 007634 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 447 (595)
.+|++++|++.|+++|+++|++...+.++-.+-.
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999877777644433
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=6.1e-13 Score=106.64 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=87.1
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 007634 328 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 328 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (595)
.+. ++..+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 407 NLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
++|.|+...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888888888776
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.51 E-value=1.6e-12 Score=126.31 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=192.9
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
-..++..+...|-...|+..|++ ...|-....+|...|+..+|.....+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 34567778888999999999987 46677889999999999999999999988 6777899999998888877
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 319 (595)
-|++|.++.+..- +.+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7777777766532 223444555556678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
.+.|..++..+|++.++|++++..|...++-.+|...++++++.+-++..+|.|.-.+....|.+++|++.+.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998763
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.50 E-value=9e-13 Score=108.77 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876643
No 120
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.49 E-value=1e-12 Score=121.13 Aligned_cols=168 Identities=14% Similarity=0.038 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
+......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+.... .++.+|.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~--qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT--QLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH--HHHHHHH
Confidence 445556677777888888888887654 557777888888999999999999998888777665433 3333333
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 350 (595)
.+.. ..+.+.+|...|++..+..+.++..+..++.++..+|++++|...+++++..+|.++.++.+++.+....|+.
T Consensus 175 ~l~~---g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 175 NLAT---GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHH---TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHh---CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 3210 0235666666666665555555666666666666666666666666666666666666666666665555555
Q ss_pred -HHHHHHHHHHHccCCCCH
Q 007634 351 -DKAVECYQMALSIKPNFS 368 (595)
Q Consensus 351 -~~A~~~~~~al~~~~~~~ 368 (595)
+.+.+++.+....+|+++
T Consensus 252 ~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSH
T ss_pred hhHHHHHHHHHHHhCCCCh
Confidence 444455555555555544
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=7.6e-13 Score=115.77 Aligned_cols=107 Identities=22% Similarity=0.258 Sum_probs=102.8
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
..++.+-..|..+++.++|.+|+..|.++|+.+|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..+|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
|..+|++.+|++.|+++++++|++...
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHH
Confidence 999999999999999999999999865
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.47 E-value=1.3e-12 Score=120.41 Aligned_cols=259 Identities=18% Similarity=0.095 Sum_probs=191.4
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 244 (595)
.++..|+|..++.-++ ....++. .......+.+++..+|+++..+..+.. ..+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence 3456799999997776 2233332 355677889999999999877665543 2233355666777777665677777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007634 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (595)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (595)
+..++..+......... .+....|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++
T Consensus 86 l~~l~~~~~~~~~~~~~-----~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 86 LEELKELLADQAGESNE-----IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHHHHHCCCTS---CHH-----HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhccccccH-----HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77766654332221111 12333455666689999999988764 567888889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 325 LAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 325 ~~l~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
.+.+.+.+..-.....+++....| ++.+|...|++.....+..+..+..++.++..+|++++|...++++++.+|+++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 998888877666666666666666 699999999999888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhh
Q 007634 403 EAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 438 (595)
+++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999998 66778888888899998744
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.45 E-value=5.3e-12 Score=101.28 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
..+-+.++..|..++..|++++|..+|+-+...+|.+...|+.+|.|+..+|++++|+..|.+++.++|+++..++..|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
|++..|+.+.|.+.|+.++......+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999998744433
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.2e-10 Score=101.19 Aligned_cols=303 Identities=18% Similarity=0.138 Sum_probs=230.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+.+..+|..|++++..-.+.+|.+... +..+|.||+...++..|..+|++.-...|......+..+..+++.+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 366778999999999999999987665 7788999999999999999999999999998888888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
.+..|+...........-.......-+-+.+..+++..+....++.-.. +. +....+.|-+..+.|+++.|
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~-------Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NE-------ADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cc-------cchhccchheeeccccHHHH
Confidence 9999999887765442223445555666777788888887766654211 11 33455667777778999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCC-------------------------HHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC-------------------------AEA 336 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~-------------------------~~~ 336 (595)
++-|+.+++...-.+-.-++++.+++..++++.|+++..++++. .|.. .++
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 99999999999989999999999999999999999998888765 2321 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPN-----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
++..+-++++.++++.|.+.+.. +-|. ++..+.+++..- ..+++.+...-+.-.+.++|--++...++-.+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHH
Confidence 67778888999999998876643 3332 366777777654 34677788888888889999778899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCh-----hhhhhHHHHhhhccCC
Q 007634 412 YRDAGSISLAIDAYEQCLKIDPDSR-----NAGQNRLLAMNYINEG 452 (595)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~ 452 (595)
|.+..-++.|.+.+. -+|+.. ....+++-++.+....
T Consensus 320 yCKNeyf~lAADvLA----En~~lTyk~L~~Yly~LLdaLIt~qT~ 361 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLA----ENAHLTYKFLTPYLYDLLDALITCQTA 361 (459)
T ss_pred HhhhHHHhHHHHHHh----hCcchhHHHhhHHHHHHHHHHHhCCCC
Confidence 999888887776543 344432 2233444455555544
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.40 E-value=2.2e-10 Score=103.09 Aligned_cols=183 Identities=12% Similarity=0.040 Sum_probs=134.9
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---H
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---C 117 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 117 (595)
...+++.++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|+++ .
T Consensus 28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 34678889999999999999999999999999999988654 58999999999999999999999999998764 5
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 007634 118 AHTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (595)
Q Consensus 118 ~~~~la~~~~~~g---------------~---~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (595)
+++.+|.++...+ + ..+|+..|++.++..|+..-+... ...+ ..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~rl--------------~~ 169 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TKRL--------------VF 169 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HHHH--------------HH
Confidence 7888888764443 1 357889999999999986543111 1100 11
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 180 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
++..+ ..--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|...|..++|......
T Consensus 170 l~~~l------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 170 LKDRL------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11111 2223456677777777777777777777776653 56677777777777777777665544
No 126
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.35 E-value=2.3e-10 Score=100.75 Aligned_cols=175 Identities=17% Similarity=0.180 Sum_probs=121.8
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (595)
.+.+.++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998875 47899999999999999999999999999999864 588
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 007634 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (595)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (595)
+.+|.++.... ...+|+..|+..+...|++.-+.... . -+..++..+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~----~--------------~l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK----K--------------RLAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH----H--------------HHHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH----H--------------HHHHHHHHH----
Confidence 88888876543 34589999999999999875432110 0 001111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 007634 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A 244 (595)
..--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..+..+|..+.|
T Consensus 141 --a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 141 --AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2223446666777777777777777777776664 34566666777777766643
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=5.4e-10 Score=104.57 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=139.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
+|....+++..+..++..|++++|+..+...+...|+|+..+...+.++...|+..+|.+.+++++...|.....
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l----- 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL----- 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH-----
Confidence 378889999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (595)
..++|..+...|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|... .+..+..
T Consensus 377 --~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~ 437 (484)
T COG4783 377 --QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYAL 437 (484)
T ss_pred --HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHh
Confidence 677788888889999999999999999999999999999999999987776554 4556777
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 007634 238 RGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 238 ~~~~~~A~~~~~~al~~~~~ 257 (595)
.|++++|+..+..+.+....
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CCCHHHHHHHHHHHHHhccC
Confidence 89999999999998887643
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=3.8e-09 Score=104.24 Aligned_cols=327 Identities=17% Similarity=0.183 Sum_probs=220.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH--------HHHHc---CCCcHHHHHHHHHHH
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS--------EAVKL---DPQNACAHTHCGILY 126 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~---~p~~~~~~~~la~~~ 126 (595)
|...|+.+.|.+..+-+ .+...|-++|....+..+.+-|.-++- ++++. +|+ +.-...|.+.
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHH
Confidence 34568888887776544 234678888888887777776655443 12222 333 3334567778
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 206 (595)
..+|..++|..+|++.-. +-.+-..|...|.+++|.+..+.-=.+ .--..|++.+..+...++
T Consensus 811 ieLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc
Confidence 889999999999998855 334456677889999998876542221 124678899999999999
Q ss_pred HHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 207 YDTALGCYEKA----------ALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 207 ~~~A~~~~~~a----------l~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.+.|+++|+++ +..+| .+...|...|..+...|+.+.|+.+|..+-.
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------- 940 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------------- 940 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------------
Confidence 99999999986 23333 2456788889999999999999999987643
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC-------
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC------- 333 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~------- 333 (595)
++.+-++.+-+|+.++|..+.++. .+..+.+.+|..|...|+..+|+..|.++-.. ..++
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344455556677777777665543 45667778888888888888888877766432 1111
Q ss_pred -------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hc-----------------cCC-CCHHHHHHHHHHHHhc
Q 007634 334 -------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQ 381 (595)
Q Consensus 334 -------~~~~~~la~~~~~~~-~~~~A~~~~~~a------l~-----------------~~~-~~~~~~~~la~~~~~~ 381 (595)
+.-....|..|...| +...|...|.+| ++ ++| .++..+..-+..+...
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 111122334444444 555555544432 11 133 3577888888889999
Q ss_pred CCHHHHHHHHHHH------HHh----------------CCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 382 GKMDAAAEMIEKA------IAA----------------NPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 382 g~~~~A~~~~~~a------l~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
.+|++|...+-.+ +.+ .|. ...++..+|.++.++|.|..|.+-|.+|
T Consensus 1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9999998766544 332 111 1357889999999999999999888765
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.34 E-value=2.1e-10 Score=107.22 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=146.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007634 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (595)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (595)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...++.++|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCc
Q 007634 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 454 (595)
+|.+.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+.+.+.+.-+-..+......+......+..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 999999999999999999999999999999999999999999999999999999988877776666665555555543
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.34 E-value=4.1e-11 Score=115.00 Aligned_cols=109 Identities=20% Similarity=0.131 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++++++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.|++++|+..|++++.++|++......+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999988754433
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.31 E-value=1e-09 Score=98.87 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=133.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
.++..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 467788999999999999999999999999999988654 4899999999999999999999999999998765
Q ss_pred HHHHHHhHHHHHHhC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (595)
Q Consensus 157 a~~~~~l~~~~~~~~------------------~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (595)
..+++.+|.++...+ ...+|+..|++.++..|+...+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445666666543332 1356778888888888886432 1222111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhhh
Q 007634 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTK 275 (595)
Q Consensus 219 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~ 275 (595)
...-..--+..|..|.+.|.+..|+.-++.+++..|+.+ ++...+..++..+|..
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111133445789999999999999999999999998765 5566677778777743
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=7.2e-11 Score=113.28 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (595)
+...|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44567777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
++++|+..|+++++++|++..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888888888887776555
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.26 E-value=1.4e-09 Score=95.67 Aligned_cols=175 Identities=23% Similarity=0.214 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.++...|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 56789999999999999999999999999998875 5689999999999999999999999999999997754 3
Q ss_pred HHHHHhHHHHHHh-----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007634 158 IVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (595)
Q Consensus 158 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 226 (595)
.+++.+|.++... +...+|+..|+..+...|++..+- +|...+..+-+ .-..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHH
Confidence 3455555554433 334577777777777777754332 12121111111 1134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHhhHHHHHHHhhhhh
Q 007634 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKNNMAIALTDLGTKV 276 (595)
Q Consensus 227 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~l~~~~ 276 (595)
--+.+|..|.+.|.+..|+..++.+++..|+.+. +...+..++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 4567899999999999999999999999999764 5566677777777543
No 134
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.24 E-value=7.1e-10 Score=103.36 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------
Q 007634 335 EACNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------ 401 (595)
Q Consensus 335 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 401 (595)
..+..+|.+|... |++++|+++|++|+...... ...+..+|.++...|+|++|++.|++.....-++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3455667777776 77777777777777663211 3466778888888889999999888887753221
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH--hhhccCCCcHH
Q 007634 402 -AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA--MNYINEGHDDK 456 (595)
Q Consensus 402 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--~~~~~~~~~~~ 456 (595)
...++..+.|+...||...|...+++....+|.....+...++. +.-+..++.+.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 24556778888999999999999999999999877665554332 33334444433
No 135
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.23 E-value=4.5e-09 Score=94.16 Aligned_cols=280 Identities=14% Similarity=0.163 Sum_probs=162.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNL 197 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~l 197 (595)
..+...+|.|++++.+--..+....+..+. ..+-.++.+++..+....++.+++.+....+.+.... ..+...+
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds-~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDS-DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 344455555555544433333322221111 1223447777888888888999999888887764332 3567779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHH
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIA 268 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~ 268 (595)
+..+..++.++++++.|+++++...++ ..++..+|.++....++++|.-+..++.++..... ........+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 999999999999999999999875432 35788899999999999999999999987754322 111122334
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 348 (595)
++.++..+..+|..-.|.++.+++.++.-...+ .+-.......+|.+|...|
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd----------------------------ra~~arc~~~~aDIyR~~g 260 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGD----------------------------RALQARCLLCFADIYRSRG 260 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC----------------------------hHHHHHHHHHHHHHHHhcc
Confidence 444444455555555555555555433110000 1112333444555555555
Q ss_pred CHHHHHHHHHHHHccCCC------CHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHhCCCc------HHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPN------FSQSLNNLGVVYTVQGKMDA-----AAEMIEKAIAANPTY------AEAYNNLGVL 411 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~ 411 (595)
+.+.|..-|+.+...-.. ..+++...+.++....-..+ |++.-++++++.... ...+..++.+
T Consensus 261 d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~i 340 (518)
T KOG1941|consen 261 DLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASI 340 (518)
T ss_pred cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555555555433111 12344444444443333333 666666666553221 3466777888
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 007634 412 YRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~ 431 (595)
|..+|..++-...+.++-+.
T Consensus 341 Yrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 341 YRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHhccchhHHHHHHHHHHHH
Confidence 87777777777666665544
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.22 E-value=3.8e-10 Score=90.84 Aligned_cols=106 Identities=24% Similarity=0.300 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNN 407 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 407 (595)
+..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3466777777777778888888887777777665 4577778888888888888888888888777664 567788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+|.++..+|++++|..+++++++..|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 88888888888888888888888888776543
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.21 E-value=4.9e-10 Score=90.18 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (595)
++.++..|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5678999999999999999999999999999876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
+|.++...|++++|+..+++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999987654
No 138
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.20 E-value=4.2e-09 Score=94.38 Aligned_cols=231 Identities=17% Similarity=0.209 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC--C----
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--Y---- 299 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~---- 299 (595)
+++.+++..+.+..++.+++.+-+..+.+....+. ..-+.....++......+.++++++.|++++....+ +
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 34444555555555555555555444443222210 001122222333333344555555555555544211 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----C------AEACNNLGVIYKDRDNLDKAVECYQMALSIK----- 364 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 364 (595)
..++..+|.++....++++|..+..++.++-.. + .-+++.++..+..+|+...|.++.+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 346677777777888888888777777765221 1 3467788999999999999999999998773
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHhcC
Q 007634 365 -PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISL-----AIDAYEQCLKID 432 (595)
Q Consensus 365 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~ 432 (595)
+........+|.+|...|+.+.|..-|+++...... ..+++...+.++....-..+ |++.-++++++.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 334567788999999999999999999999876321 24677777777776555444 888888888775
Q ss_pred CCCh----hhhhhHHHHhhhccCCCcHHHH
Q 007634 433 PDSR----NAGQNRLLAMNYINEGHDDKLF 458 (595)
Q Consensus 433 p~~~----~~~~~~~~~~~~~~~~~~~~~~ 458 (595)
..-. .......++..|-..|..++.-
T Consensus 322 ~~IG~K~~vlK~hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 322 SSIGAKLSVLKLHCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccchhHHH
Confidence 5432 2233344566665666555443
No 139
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=1.6e-09 Score=89.94 Aligned_cols=196 Identities=17% Similarity=0.123 Sum_probs=134.7
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (595)
.+..++..|..|-..|-+.-|.--|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35567888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
+--|++.-|.+-+.+..+.+|+++.-...+ |.. ...-++.+|...+.+-.+...+....|...+ ...|+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL---Yl~-----E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgk 212 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWL---YLN-----EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGK 212 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHH---HHH-----HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhh
Confidence 999999999999999999999988432211 111 1133666776555433332222222222222 12222
Q ss_pred HHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 316 FDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
..+ ...++++.....++ .+.++.+|..+...|+.++|...|+-++..
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 211 12222222222222 345566666666666666666666665544
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.19 E-value=2.2e-06 Score=86.55 Aligned_cols=200 Identities=18% Similarity=0.066 Sum_probs=137.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (595)
.++-..-....+++.+|+..+.+++++.|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 33444456788999999999999999999999999999999999999999998888877778888889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH-----------------
Q 007634 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA----------------- 193 (595)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~----------------- 193 (595)
++++|..+|++++..+|+ .+.. ..+-.+|.+.+.|.+-.+.--+..+..|+.+..
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell-------~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELL-------YHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 999999999999999998 4442 222233333333333222222222222222111
Q ss_pred -----------------------------HHHHHHHHHHcCCHHHHHHHHHH-HHH-hCCCCHHHHHHHHHHHHHcCCHH
Q 007634 194 -----------------------------YYNLGVVYSELMQYDTALGCYEK-AAL-ERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 194 -----------------------------~~~la~~~~~~g~~~~A~~~~~~-al~-~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
....-.++..+|++++|...+.. ..+ ..+.+..........+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 11112344456777777777732 222 23334444445566667777777
Q ss_pred HHHHHHHHHHhcCCCc
Q 007634 243 SAIACYERCLAVSPNF 258 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~ 258 (595)
+-.+...+++...+++
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 7777777777777765
No 141
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.18 E-value=1e-09 Score=93.87 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=102.4
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHH
Q 007634 59 RSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLV 133 (595)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 133 (595)
+-.+.|..+...+...++.++.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 44556777888887776666655 5678999999999999999999999999887663 458999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 007634 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (595)
Q Consensus 134 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (595)
+|+..+++++.+.|.....+..++.++..+|..+...|+++.|+..+.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 999999999999999999888888888888888878888775554443
No 142
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-09 Score=97.23 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIE 392 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 392 (595)
.+.-+.-++.-+..+|++++-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555666777777788888888888888888888888888888888888888888888888876554 4678888899
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
+++..+|++..+.+.||..++..|++.+|...++..+...|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999988877653
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.18 E-value=7.6e-10 Score=103.14 Aligned_cols=174 Identities=20% Similarity=0.150 Sum_probs=108.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--C----CHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H----YAPAYYN 196 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~----~~~~~~~ 196 (595)
|.+|...|++++|..+|.++....-.... ....+..+...+.++... ++++|+.++++++.+.- + -...+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~-~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGD-KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45555666666666666666544322111 122344455555555444 77777777777776521 1 2456788
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 007634 197 LGVVYSEL-MQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (595)
Q Consensus 197 la~~~~~~-g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (595)
+|.+|... |++++|+++|+++++.... ...++..+|.++...|+|++|++.|++.....-++..........+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 89999998 9999999999999886321 2457788999999999999999999999876554433233333444
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHhhCCC
Q 007634 270 TDLGTKVKLEGDINQGVAYYKKALYYNWH 298 (595)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 298 (595)
...+.++...|++..|...+++....+|.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45555555566666666666666666554
No 144
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.17 E-value=4.1e-07 Score=82.78 Aligned_cols=301 Identities=19% Similarity=0.109 Sum_probs=219.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVV 200 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~ 200 (595)
-|.+....|+-..|.+.-.++-++-..+.+... ...-+......|+++.|.+-|+.++. +|. ..-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLI-----hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLI-----HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHH-----HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 355666778888888888887755444444322 33334555667999999999988875 333 22222233333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhhhhhhhc
Q 007634 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLE 279 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 279 (595)
-...|..+.|+.+-+++....|.-+.++...-...+..|+++.|++..+......--... +....+..+...+ .....
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA-~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA-MSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-HHHhc
Confidence 456899999999999999999999988888888889999999999998876543211111 1111122221111 11224
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
.+...|...-.++.++.|+....-..-+..++..|+..++-.+++.+.+..|.- . ++.+|....--+.++.-+++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHH
Confidence 578899999999999999999999999999999999999999999999988753 2 33444443333444444444
Q ss_pred ---HHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC
Q 007634 360 ---ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 360 ---al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 435 (595)
...+.|++.+.....+...+.-|++..|..--+.+....|. ..++..++.+-... |+-.+...++-+++.- |.+
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A-Prd 395 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA-PRD 395 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC-CCC
Confidence 44568999999999999999999999999999999999997 66788888888776 9999999999999874 444
Q ss_pred h
Q 007634 436 R 436 (595)
Q Consensus 436 ~ 436 (595)
+
T Consensus 396 P 396 (531)
T COG3898 396 P 396 (531)
T ss_pred C
Confidence 3
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.17 E-value=1.5e-10 Score=82.29 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 433 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 433 (595)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677777777777777777777777777777777777777777777777 57777777777777776
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.14 E-value=4.2e-09 Score=95.37 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=98.4
Q ss_pred CCchHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cHH
Q 007634 45 GFEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NAC 117 (595)
Q Consensus 45 ~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~ 117 (595)
+.+....+..|..+ +..|+|++|+..|++.++..|++ +.+++.+|.+++..|++++|+..|+++++..|+ .++
T Consensus 139 ~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 139 SGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 34667888898876 67899999999999999999998 589999999999999999999999999998887 478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
+++.+|.++...|++++|...|+++++..|+...+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999999997654
No 147
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.4e-09 Score=94.99 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVEC 356 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~ 356 (595)
...+..+.-++..+..+|++.+.|..||.+|...|+++.|...|.+++++.|++++.+..+|.++..+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 357777888889999999999999999999999999999999999999999999999999999988754 57889999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
++++++.+|.+..+.+.||..+++.|++.+|...++..+...|.+.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999987653
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.13 E-value=8.9e-10 Score=84.86 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777788877778888888888888777777777777888888888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 007634 416 GSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 416 g~~~~A~~~~~~al~~~p~ 434 (595)
|++++|...+.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888887777663
No 149
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.13 E-value=1.9e-09 Score=92.22 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.....+.++|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3344455555555555555555555555443331 2345555555555555555555555555555555555555555
Q ss_pred HHH-------HcCCHH-------HHHHHHHHHHhcCCCChh
Q 007634 411 LYR-------DAGSIS-------LAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 411 ~~~-------~~g~~~-------~A~~~~~~al~~~p~~~~ 437 (595)
++. .+|+++ +|..+|++++..+|++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 554 444544 566666677777776543
No 150
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.12 E-value=7.4e-08 Score=100.83 Aligned_cols=223 Identities=16% Similarity=0.121 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (595)
.+..+-|++.+..+|+..-.|........+.++.++|.+..++++.. ++...+-..++-.+|.++-..| |.-+...
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHH
Confidence 34456677777788888888888888888888888888888888764 4444444444444555544333 4556667
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
+.|+++.+... ....+..|..+|...+++++|.++|+..++...+...+|..+|..++.+++-+.|...+.+|++.-|.
T Consensus 1518 kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1518 KVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 77777776542 24577888889999999999999999999988888899999999999999999999999999998887
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 367 --FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 367 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
+.+.....|.+-++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+.++..|++++.+.=.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 77888889999999999999999999999999999999999999999999999999999999886533
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.12 E-value=5.9e-09 Score=86.56 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=95.8
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHH
Q 007634 312 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 385 (595)
Q Consensus 312 ~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~ 385 (595)
..++...+...++..++.+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+...+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5778888888888888888887 5667788899999999999999999998877654 457788899999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
+|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999998663 3344456788889999999999999999998875
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.11 E-value=2.4e-09 Score=91.96 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 374 (595)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.++++++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345577888888888888888888888888776543 46788888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
|.++...|+...+...++.++. .+++|.+++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 8888888887777666655543 26788889999999988873
No 153
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=9.3e-08 Score=82.54 Aligned_cols=169 Identities=14% Similarity=0.034 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
......-|.++...|++++|++...+. .+.++...-..++.++.+.+-|...++++.+++.+. ....++.+|.
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv 180 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWV 180 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHH
Confidence 345555677888999999999888763 345666677788889999999999999998877653 3445666666
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 350 (595)
.++. ..+.+.+|.-+|++.-+..|..+..+..++.++..+|+|++|...++.++..++++++.+.++..+-...|..
T Consensus 181 ~la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 181 KLAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 6542 2345788888888888877777888888888888888888888888888888888888888888888777776
Q ss_pred HHHHH-HHHHHHccCCCCHH
Q 007634 351 DKAVE-CYQMALSIKPNFSQ 369 (595)
Q Consensus 351 ~~A~~-~~~~al~~~~~~~~ 369 (595)
.++.+ .+.+....+|+++.
T Consensus 258 ~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 258 AEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred hHHHHHHHHHHHhcCCcchH
Confidence 55543 44555555666543
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.11 E-value=3.9e-10 Score=80.18 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 399 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 399 (595)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566677777777777777777777777777777777777777777776 57777777777777665
No 155
>PRK15331 chaperone protein SicA; Provisional
Probab=99.10 E-value=2.4e-09 Score=86.42 Aligned_cols=107 Identities=11% Similarity=0.028 Sum_probs=99.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
.+...-+..+..|..++.+|++++|..+|+-+...+|.+++.++.+|.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 33456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
|.|++..|+...|..+|+.++. .|.+.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999998 45543
No 156
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=8.4e-06 Score=76.59 Aligned_cols=385 Identities=13% Similarity=0.073 Sum_probs=245.0
Q ss_pred hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcC---CCc---
Q 007634 48 GKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLD---PQN--- 115 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~--- 115 (595)
.+.++.+|+.+...| +...++++++..+...|.+ +.....+|.+++ ...+.+.|...++++..+. |+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 456777888888888 8888888888888776654 345566666554 5677888888888887653 222
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH----------
Q 007634 116 -ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA---------- 183 (595)
Q Consensus 116 -~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~---------- 183 (595)
..+...++.+|.... .+..|...+++++++....+-. -...++.++.......++..|++.+.-.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ 163 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFP 163 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhH
Confidence 345667777777766 7788888888888877665532 2334566666666666666666553211
Q ss_pred ---------------------------------HhhCCCC-------HHHHHHHHH-HHHHcCCHHHHHHHHHHHHH---
Q 007634 184 ---------------------------------LKIDPHY-------APAYYNLGV-VYSELMQYDTALGCYEKAAL--- 219 (595)
Q Consensus 184 ---------------------------------l~~~~~~-------~~~~~~la~-~~~~~g~~~~A~~~~~~al~--- 219 (595)
.+....+ -..+..+-. .|...|+...+...+++.-+
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 1111111 011222222 23345665555555554321
Q ss_pred h-CCC------------CHH-----------HHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCc-------HHHHhhHH
Q 007634 220 E-RPM------------YAE-----------AYCNMGVI--YKNRGDLESAIACYERCLAVSPNF-------EIAKNNMA 266 (595)
Q Consensus 220 ~-~~~------------~~~-----------~~~~la~~--~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~ 266 (595)
. .+. .+. ++..+-.+ -...|-+++|.++-++++....+. +.......
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 1 110 011 11111111 123566778888777777552221 11111122
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-C--
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYN---WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C-- 333 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~-- 333 (595)
..+..+..+-...|++.+|++....+.+.. |. .+.+.+.+|......+.++.|...|..+.+.-.. +
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 233444555566899999998888777653 43 2457788898889999999999999999887433 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-c-
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y- 401 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 401 (595)
+.+..++|..|...|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.++.... +
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 44557889999998876555444443 34432 346777888889999999999999999987521 1
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 402 ----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 402 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.-.+..|+.+....|+..++.+..+-++++....++.
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 3456778999999999999999999998876554443
No 157
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=3.2e-08 Score=82.37 Aligned_cols=203 Identities=18% Similarity=0.192 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+.-+ .
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya-------~ 136 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-------H 136 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH-------H
Confidence 346677888888888999999999999999999999999999999999999999999999999999987665 5
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
.+.|..++.-|++.-|.+-+.+-.+.+|++|---..+- +-...-+..+|...+.+-.+...+....|...+.. .|+
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---Lgk 212 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGK 212 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---Hhh
Confidence 56666777779999999999988888888764322221 12233456666655544333322223333332222 222
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (595)
..+ ...++++..-..++...-..+..+++.+|..+...|+.++|...|+-++..
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 211 233444444444555445555666666777777777777777777666644
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.08 E-value=5.4e-10 Score=78.29 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (595)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677777788888888888888887787778888888888888888888888888877777764
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.08 E-value=9.8e-09 Score=85.23 Aligned_cols=129 Identities=16% Similarity=0.057 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (595)
....+..+......++...+...++++++.+|++ ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4566777777788999999999999999999998 5688889999999999999999999999987665 457888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (595)
++.++...|++++|+..++.. . +... .+.++..+|.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~--~~~~-----~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-P--DEAF-----KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-c--Ccch-----HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999662 1 1111 13346778899999999999999998764
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.08 E-value=3.8e-10 Score=83.67 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.6
Q ss_pred hCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (595)
.+|+|++|+..++++++.+|. +...++.+|.|++..|++++|+..+++ .+.+|.+....+.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 378999999999999999995 466788899999999999999999999 88889898999999999999999999999
Q ss_pred HHHHH
Q 007634 138 SYHKA 142 (595)
Q Consensus 138 ~~~~~ 142 (595)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=99.08 E-value=1.8e-09 Score=87.16 Aligned_cols=108 Identities=9% Similarity=0.030 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (595)
.++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44445666777777777888888888887777777777788888888888888888888888888777777777788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.|+..+|+.+.|+.+|..+++ .|.+...
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 888888888888888887777 4554433
No 162
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.07 E-value=1.5e-07 Score=81.84 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=131.0
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---H
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---C 117 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 117 (595)
....+..++..|...++.|+|++|+..|+.+....|.+ ..+.+.++.++++.+++++|+..+++.+++.|+++ .
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 44678999999999999999999999999999998875 47899999999999999999999999999999765 4
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 118 AHTHCGILYKDEG--------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 118 ~~~~la~~~~~~g--------~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
+++..|.+++..= -..+|+..|+..+...|++.-+..... =+..+...+
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~------------------~i~~~~d~L----- 166 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKA------------------RIVKLNDAL----- 166 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHH------------------HHHHHHHHH-----
Confidence 6777787766532 245788889999999998653311111 111111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
..--...|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-.-.|++
T Consensus 167 -A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 -AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 1122345666666666666666666666655442 3455566666666666666655443333333333
No 163
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.07 E-value=1.4e-06 Score=80.29 Aligned_cols=203 Identities=31% Similarity=0.464 Sum_probs=102.7
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV-IYK 236 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~ 236 (595)
....+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+. ++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 34444444555555555555555554 455555556666666666666666666666666655554333444444 566
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 007634 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 316 (595)
..|+++.|...+.+++...|. .. .........+..+...+++
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~----~~----------------------------------~~~~~~~~~~~~~~~~~~~ 183 (291)
T COG0457 142 ELGDYEEALELYEKALELDPE----LN----------------------------------ELAEALLALGALLEALGRY 183 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCC----cc----------------------------------chHHHHHHhhhHHHHhcCH
Confidence 666666666666666554432 00 1122222222234444444
Q ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 317 DMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 317 ~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+.|+..+.+++...+. ....+..++..+...+++.+|+..+..++...|.....+..++..+...+.++++...+.+++
T Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444 344455555555555555555555555555555444444444444444444555555555555
Q ss_pred HhCCC
Q 007634 396 AANPT 400 (595)
Q Consensus 396 ~~~p~ 400 (595)
...|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 55554
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.07 E-value=2.1e-09 Score=82.68 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (595)
.++.+|..++..|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 007634 130 GRLVEAAESYHKALSADPS 148 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~ 148 (595)
|++++|...+.+++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.07 E-value=9.6e-09 Score=102.71 Aligned_cols=143 Identities=22% Similarity=0.197 Sum_probs=118.7
Q ss_pred hCCCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 007634 295 YNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMAL 361 (595)
Q Consensus 295 ~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al 361 (595)
..|.+..+| +..|.-+...+. ...|+.+|+++++.+|+++.++..++.++.... +...+....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345565544 455666655544 789999999999999999999999888775532 3456666777766
Q ss_pred cc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 362 SI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 362 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.+ +|..+.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|.+.|++|+.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 64 6777889999999999999999999999999999995 8899999999999999999999999999999998853
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.07 E-value=7e-10 Score=77.68 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666777777777777777777777777777777777777777777777777777776653
No 167
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.06 E-value=7.1e-07 Score=82.39 Aligned_cols=224 Identities=31% Similarity=0.410 Sum_probs=174.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHhhHHHHHHHhhhhhhhc
Q 007634 204 LMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLE 279 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (595)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHH
Confidence 35555666666666666554 356666677777777777777777777665 333332 3334444444445
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVE 355 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~ 355 (595)
+++..++..+..+....+.........+. ++...|+++.|...+.+++...| .....+...+..+...+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 56777777777777766665555555555 89999999999999999988776 456677777777889999999999
Q ss_pred HHHHHHccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 356 CYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 356 ~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+.+++...+. ....+..++..+...+++++|...+..++...|.....+..++..+...|+.+++...+.+++...|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999 79999999999999999999999999999999987788888888888888899999999999999998
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.06 E-value=7.2e-09 Score=88.98 Aligned_cols=118 Identities=22% Similarity=0.293 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--- 109 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL--- 109 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH---
Confidence 455677888888888888888888888888776653 45788888888888888888888888888888776663
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 224 (595)
..+|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 110 ----~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 ----NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ----HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 3444444444554444433333321 2456666666666666654
No 169
>PRK11906 transcriptional regulator; Provisional
Probab=99.06 E-value=1.9e-08 Score=95.07 Aligned_cols=160 Identities=9% Similarity=0.008 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHcCCC
Q 007634 50 DALSYANILRSRN---KFVDALALYEIVL---EKDSGNVEAHIGKGICLQMQ---------NMGRLAFDSFSEAVKLDPQ 114 (595)
Q Consensus 50 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 114 (595)
.++..|...+..+ ..+.|+.+|.+++ +.+|+.+.++..++.|++.. .+..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4566666665554 3456777788888 77777788888888777654 1334567777777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 007634 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (595)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 194 (595)
++.++..+|.+....++++.|...|++++.++|+...+ ++..|......|+.++|.+.++++++++|....+-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77777777777777777777777777777777776555 55556666666777777777777777777654433
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHH
Q 007634 195 YNLGVV-YSELMQYDTALGCYEK 216 (595)
Q Consensus 195 ~~la~~-~~~~g~~~~A~~~~~~ 216 (595)
...-.+ .+-....++|++.|-+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhh
Confidence 332222 3334455566665544
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=2.2e-08 Score=87.84 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (595)
.++..+..|..++..|+|.+|...|...++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 45669999999999999999999999999999986 5899999999999999999999999999987764 68899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
.+|.+...+|+.++|...|+++++..|+...+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999999998765
No 171
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.04 E-value=1.8e-10 Score=102.14 Aligned_cols=198 Identities=14% Similarity=0.037 Sum_probs=134.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (595)
+-+.|+.|+++|+|++|+.+|.+.+..+|.|+..+.+.|.+|+++..+..|...+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhH-H-HHHHh-CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLG-T-SLKLA-GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (595)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~-~-~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 207 (595)
+..+|.+.++.++++.|++.+....++.+-..+- . +-... | +-.|.+--.+++. ...-|..+...|.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G-~~~A~Q~~~Q~l~--------~K~~G~~Fsk~~~~ 250 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPG-FTPARQGMIQILP--------IKKPGYKFSKKAMR 250 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCC-CCccccchhhhcc--------ccCcchhhhhhhcc
Confidence 9999999999999999997765444333211000 0 00000 1 1112222222221 11224455556666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
+.++.++-+-+.....+...-.+ +..+.+..+++.++.-..+++..+|..
T Consensus 251 ~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 251 SVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred ccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 66666665544443333222222 444455555555555555555554443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.04 E-value=7e-10 Score=82.26 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 347 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ .+.+|.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46666777777777666663 344566667777777777777777766 556666666666667777777777777776
Q ss_pred HHHH
Q 007634 425 YEQC 428 (595)
Q Consensus 425 ~~~a 428 (595)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6654
No 173
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8.1e-09 Score=95.01 Aligned_cols=128 Identities=22% Similarity=0.210 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPH----C-----------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 368 (595)
...|..+++.|+|..|...|++++..-.. + ..++.+++.++.++++|.+|+..+.++|.++|+|.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34456666666666666666665543111 0 12344555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 431 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 431 (595)
.+++..|.++..+|+++.|+..|++++++.|++..+...+..+..+..++.+. .+.|.+.+..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555555555555555555555555555444444444333322 4444444443
No 174
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.2e-07 Score=79.30 Aligned_cols=257 Identities=16% Similarity=0.098 Sum_probs=181.8
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 245 (595)
-++..|+|.+++..-++.-... ........+.+.|..+|++..-+......- .....+...++.....-++.++-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHH
Confidence 3455688888888776654443 667777888888999998876655444322 122345555666665556655555
Q ss_pred HHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007634 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (595)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 325 (595)
.-+.+.+........ ......-+.++...+++++|+...... .+.++...-..++.++.+.+-|...+++
T Consensus 93 ~~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 93 ASLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444332222111 112333455666788999999888763 3456666777888899999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 007634 326 AFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (595)
Q Consensus 326 ~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (595)
+.+++.+. .+..||..+.. .+++.+|.-+|++.-+..|..+..+...+.|...+|++++|...++.++..++++
T Consensus 163 mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 163 MQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 98877553 34445554443 3478899999999988888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCChhh
Q 007634 402 AEAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRNA 438 (595)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~ 438 (595)
++++.++-.+-...|...++.+ ...+....+|+++-.
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9999999999999998766554 455666677776643
No 175
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=2e-07 Score=97.81 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=190.2
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 007634 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMY----AEAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~----~~~~~~la~~~~~~~~~~~A~~~ 247 (595)
-.+..+-|++.+..+|+....|...-....+.++.++|.+..++++.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788888999999999999999999999999999999999874 3332 33455555555556777888899
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
|++|.+..... .++..+..+|...+.+++|.++++..++...+....|..++..++..++-+.|...+.+|+
T Consensus 1520 FeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1520 FERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99998775432 3566777788888999999999999999999899999999999999999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 328 HFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 328 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
+.-|. +.+.....|.+-++.|+.+.+...|+-.+..+|.-.+.|.-+...-.+.|+.+.+...|++++.+.
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99888 788899999999999999999999999999999999999999999999999999999999999874
No 176
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=8.7e-07 Score=83.03 Aligned_cols=263 Identities=14% Similarity=0.103 Sum_probs=184.8
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCC
Q 007634 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~--------~~~~~~~la~~~~~~~~ 240 (595)
..+...+..-.+.++....+.+.+....+..++..|++.+|.+.+... +...|. ....|.++|.++++.|.
T Consensus 219 ~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~ 298 (696)
T KOG2471|consen 219 TRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC 298 (696)
T ss_pred HHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh
Confidence 333444444444444445566788888899999999999999988754 222222 22356899999999999
Q ss_pred HHHHHHHHHHHHh-c----------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 241 LESAIACYERCLA-V----------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (595)
Q Consensus 241 ~~~A~~~~~~al~-~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 309 (595)
|.-+..+|.++++ . .|...........++++.|..+...|++-.|.++|.++......++..|..++.+
T Consensus 299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 9999999999995 1 1112222233346778889999999999999999999999999999999999998
Q ss_pred HHhcCC-------------------------------------------------HHHHHHHHHHHHhhC----------
Q 007634 310 YGEMLK-------------------------------------------------FDMAIVFYELAFHFN---------- 330 (595)
Q Consensus 310 ~~~~~~-------------------------------------------------~~~A~~~~~~~l~~~---------- 330 (595)
++...+ .+-|.-+++.++-+-
T Consensus 379 Cima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~ 458 (696)
T KOG2471|consen 379 CIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSIL 458 (696)
T ss_pred HHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhh
Confidence 854321 133455555544320
Q ss_pred -----------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 331 -----------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 331 -----------------------------------~-~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
| .. ..++.+.+.+-...|+.-.|+..-.+.++.
T Consensus 459 ~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~ 538 (696)
T KOG2471|consen 459 SVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL 538 (696)
T ss_pred hhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh
Confidence 0 00 124556677778899999999999998876
Q ss_pred CCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHH-----------------------hCCC----------c----
Q 007634 364 KPNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAIA-----------------------ANPT----------Y---- 401 (595)
Q Consensus 364 ~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~-----------------------~~p~----------~---- 401 (595)
|+...++..+|.+| ..+.+..+|...+.--+- ++|. .
T Consensus 539 -~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~A 617 (696)
T KOG2471|consen 539 -ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEA 617 (696)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHH
Confidence 55566666666555 456777777766654210 0110 1
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 402 -AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 402 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
...+++||.++.-+|++++|..++..+..+-|
T Consensus 618 r~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 618 RGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 23678999999999999999999999999887
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.01 E-value=2e-08 Score=100.47 Aligned_cols=144 Identities=16% Similarity=0.062 Sum_probs=110.2
Q ss_pred HHcCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 007634 75 LEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------RLVEAAESYHK 141 (595)
Q Consensus 75 l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~ 141 (595)
....|.+..+| +..|..+...++ ...|+.+|+++++++|++..++..++.++.... +...+.....+
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556665544 556666665544 678999999999999999988888887775532 34566666677
Q ss_pred HHhc--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007634 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (595)
Q Consensus 142 ~l~~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (595)
++.+ +|..+.. +..+|......|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.
T Consensus 410 a~al~~~~~~~~~-------~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRI-------YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 4544443 55556666778999999999999999999 478999999999999999999999999999
Q ss_pred hCCCCHH
Q 007634 220 ERPMYAE 226 (595)
Q Consensus 220 ~~~~~~~ 226 (595)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998775
No 178
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.4e-08 Score=93.52 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDS----GN-----------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (595)
...-..|..+++.|+|..|...|++++..-+ .+ ..++.+++.|+.++++|.+|+..+.++|..+|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 3445678899999999999999999887422 11 24788999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC-hHHHHHHHHHHHhh
Q 007634 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKI 186 (595)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~ 186 (595)
+|..+++..|.++...|+++.|+..|++++++.|.|..+...+..+- .+... .+...+.|.+++..
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~-------~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK-------QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999988754443332 22222 33345666666655
No 179
>PRK11906 transcriptional regulator; Provisional
Probab=98.99 E-value=3.1e-08 Score=93.67 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 281 DINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 281 ~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 348 (595)
..+.|+.+|.+++ +.+|....++..++.++... ....+|.+..+++++++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888888888 88888888888888877654 12345566666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQ 427 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 427 (595)
+++.|...|++|+.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 666666666666666666666666666666666666666666666666666543322222222 2223344455555443
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.99 E-value=1.5e-08 Score=91.78 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=77.7
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 007634 334 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 406 (595)
Q Consensus 334 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 406 (595)
....+..|..+ ...|++++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555544 45677777777777777777776 4677778888888888888888888887776654 67777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 788888888888888888888888888776543
No 181
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=8.8e-07 Score=88.11 Aligned_cols=184 Identities=18% Similarity=0.164 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHH------------HHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 007634 50 DALSYANILRSRNKFVDALALY------------EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~------------~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (595)
.|-.+|....+..+.+-|.-++ +++. .+|++ .-...|.....+|..++|+.+|++.-+.
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~-q~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ-QNGEE--DEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH-hCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 4556777777776666665443 3332 24433 3345566778899999999999987543
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH----------HhhC
Q 007634 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------LKID 187 (595)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~ 187 (595)
-.+-.+|...|.+++|.+..+.-=.++ +-..|++.+..+...++.+.|+++|+++ +..+
T Consensus 830 --DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 830 --DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred --HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 346677888999999988766432222 2223777888888889999999998864 2223
Q ss_pred CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHH
Q 007634 188 PH----------YAPAYYNLGVVYSELMQYDTALGCYEKAAL---------------------ERPMYAEAYCNMGVIYK 236 (595)
Q Consensus 188 ~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------~~~~~~~~~~~la~~~~ 236 (595)
|. +...|...|..+...|+.+.|+.+|..+-. ....+..+.+.+|+.|.
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 32 456777889999999999999999988843 23345678899999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 007634 237 NRGDLESAIACYERCLA 253 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~ 253 (595)
..|++.+|+..|.++-.
T Consensus 979 n~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999887643
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.98 E-value=5.5e-06 Score=75.70 Aligned_cols=290 Identities=16% Similarity=0.025 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILY 126 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 126 (595)
+-+..|.+....|+-..|.+.-.+.-+.-..+ +-++..-++.-...|+++.|.+-|+..+. +|.. .-.+..+-.-.
T Consensus 86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleA 164 (531)
T COG3898 86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHH
Confidence 34556777777888889988888776543333 45666667788889999999999988764 3321 12233333334
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh---CCCCH-----HHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI---DPHYA-----PAYYNLG 198 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~~~-----~~~~~la 198 (595)
...|..+.|..+-+++....|.-+.+. ...-......|+|+.|+++.+..... .++.. ..+...+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~-------~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAA-------RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHH-------HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 568999999999999999999877663 23333445679999999998876554 22211 1111122
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
... -.-+...|...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|... ++..|... +
T Consensus 238 ~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~a-----r 306 (531)
T COG3898 238 MSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRA-----R 306 (531)
T ss_pred HHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHh-----c
Confidence 222 234577888888888999999888888888999999999999999999988887643 22222221 1
Q ss_pred cCCHHHHHHHH---HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHH
Q 007634 279 EGDINQGVAYY---KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAV 354 (595)
Q Consensus 279 ~~~~~~A~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~ 354 (595)
.|+ .++.-+ ++...+.|++.+.....+...+..|++..|...-+.+....|. ..++..++.+-... |+-.++.
T Consensus 307 ~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 307 SGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred CCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHH
Confidence 222 222222 2223334444554444454444445444444444444444443 22333333333322 4444444
Q ss_pred HHHHHHH
Q 007634 355 ECYQMAL 361 (595)
Q Consensus 355 ~~~~~al 361 (595)
.++-+++
T Consensus 384 ~wlAqav 390 (531)
T COG3898 384 QWLAQAV 390 (531)
T ss_pred HHHHHHh
Confidence 4444443
No 183
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.92 E-value=1e-09 Score=97.46 Aligned_cols=239 Identities=14% Similarity=0.055 Sum_probs=152.9
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
+...|+.|+.+|.|++|+.+|.+++..+|.++..+.+.+.+|+++..+..|......++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 319 (595)
...+|.+-++.++.+.|++.+....++. +. ...++. -+.+..|.. -+|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~-------Sl~E~~----I~~KsT~G~-----------------~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR----IN-------SLRERK----IATKSTPGF-----------------TPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH----hc-------chHhhh----HHhhcCCCC-----------------Ccc
Confidence 9999999999999999997654433222 11 111110 011111111 111
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 007634 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (595)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (595)
.+-..+++.+ -.-|..+...|.++.++.++-+.+....++...-.+ +..+.+..++++|+...-+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 1111111110 112333444455555555555444443333322222 4445555555666655555555555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.........+.+-.-.|...++...++.++.+.|.+..+.
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~ 338 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPK 338 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccch
Confidence 4433333444444444555566666666666666555443
No 184
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=5.5e-05 Score=71.32 Aligned_cols=348 Identities=12% Similarity=0.030 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
+.++..+|..+...| +...++++++..+...|.+ +.....+|.+++ ...+.+.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356788888888888 8999999999999887764 456677776654 5789999999999998765444433333
Q ss_pred HHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH
Q 007634 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAE 226 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~ 226 (595)
.-.....++.++.... .+..+...+++++++....+ ...+.++.++.-..++..|++.+.-..+.... ...
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 3444566777777666 88999999999999976654 45677899999999999998875432111100 011
Q ss_pred HHHHH--HHHHHHcCCHHHHH---HHHHHHHhcCCCcHHHHhhH------------------------------------
Q 007634 227 AYCNM--GVIYKNRGDLESAI---ACYERCLAVSPNFEIAKNNM------------------------------------ 265 (595)
Q Consensus 227 ~~~~l--a~~~~~~~~~~~A~---~~~~~al~~~~~~~~~~~~~------------------------------------ 265 (595)
..+.+ +.++....+..+.. ....+..+....++.-...+
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 11111 11111111211111 11111111111111000000
Q ss_pred ----------------------------HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC------CH--------HHH
Q 007634 266 ----------------------------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YA--------DAM 303 (595)
Q Consensus 266 ----------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~--------~~~ 303 (595)
+.++...-..-...|-+++|.++-++++....+ .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 001111001111345566666666666543211 11 134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-C--HHH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-F--SQS 370 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~--~~~ 370 (595)
-.+..+-.-.|++.+|++....+.+. .|. .+.+.+.+|.....-+.++.|...|..+.+.-.. + +-+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45566667778888888877776654 333 2456667777777778888888888888876433 2 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
..++|.+|...|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+++.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 56788888887765544333332 34432 3467777888888899999999999988876
No 185
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.90 E-value=6.1e-08 Score=76.69 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=97.5
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (595)
...+..++..|...++.|+|.+|++.|+.+....|.. ..+.+.++.+++..+++++|+..+++.++++|+++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4578899999999999999999999999999998864 57999999999999999999999999999999875 57
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHH
Q 007634 119 HTHCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 119 ~~~la~~~~~~g~---------------~~~A~~~~~~~l~~~~~~~~~ 152 (595)
++..|.+++.+.. ..+|...|++.+...|++.-+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8999999988876 889999999999999987644
No 186
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.89 E-value=6.1e-08 Score=92.48 Aligned_cols=121 Identities=23% Similarity=0.239 Sum_probs=108.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
.+-..+...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.++++..|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455566678899999999998888765 6667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+.|+...+++++..|++...|+.|+.+|..+|++++|+..+..+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999776643
No 187
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=1.1e-06 Score=82.28 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=125.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHcCCC--------cH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA-VKLDPQ--------NA 116 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~ 116 (595)
...+........+++..+..-+..-.+.++....+.+.+++..+..++..|++.+|.+.+... +...|. .-
T Consensus 204 ~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~c 283 (696)
T KOG2471|consen 204 LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSC 283 (696)
T ss_pred cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhh
Confidence 344555566677788888888888888888888889999999999999999999999987643 222232 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--------CC--CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALS-A--------DP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~-~--------~~--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (595)
..|.++|.++++.|.|.-+..+|.+++. . .| ...-....-..++++.|..+...|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 3568899999999999999999999995 1 11 11111222345689999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 007634 186 IDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 186 ~~~~~~~~~~~la~~~~~ 203 (595)
....+|..|..++.+++.
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999998874
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.89 E-value=7e-09 Score=73.44 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=56.2
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
++..|+|++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678888899999999888888888888889999999999999999998888888888777776664
No 189
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.87 E-value=9.8e-05 Score=70.74 Aligned_cols=397 Identities=12% Similarity=0.037 Sum_probs=247.4
Q ss_pred cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH-HH
Q 007634 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH-TH 121 (595)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~ 121 (595)
..+.+.+.|..+.+.+-.+ .+++....|++.+...|..+.+|.......+...+|+.-..+|.+++..--+ .+.| ..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHH
Confidence 4567899999998888777 9999999999999999999999999999999999999999999999875433 3333 23
Q ss_pred HHHHHHHcCCHHHHHHHHHH----HHh---cCCCCHHHHHHHHHHHH---HhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 122 CGILYKDEGRLVEAAESYHK----ALS---ADPSYKPAAECLAIVLT---DLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~----~l~---~~~~~~~~~~~~a~~~~---~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
+..+-...|+...+....-+ ++. .++.....|......+. ..|.. ....+.+...+.|++++...-.+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~-ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKY-EENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccH-HHHHHHHHHHHHHHHHhcCccccH
Confidence 33444445554443333333 322 33444343333222111 12222 223366677778888876533332
Q ss_pred H-HHHHH-----------H--HHHHHcCCHHHHHHHHHHHHHh-------CCC-----------CHHHHHHHHHHHHHcC
Q 007634 192 P-AYYNL-----------G--VVYSELMQYDTALGCYEKAALE-------RPM-----------YAEAYCNMGVIYKNRG 239 (595)
Q Consensus 192 ~-~~~~l-----------a--~~~~~~g~~~~A~~~~~~al~~-------~~~-----------~~~~~~~la~~~~~~~ 239 (595)
+ .|... | .+-.....|-.|...+++.... +|. ..+.|.++...-...+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 2 11111 1 1112234566666666665432 111 0123333322221111
Q ss_pred ------C--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC-------HHHHHHHHHHHHhhCC-CCHHHH
Q 007634 240 ------D--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-------INQGVAYYKKALYYNW-HYADAM 303 (595)
Q Consensus 240 ------~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~-~~~~~~ 303 (595)
. ...-.-.+++++...+-.++.|+..+..+...++.+...|+ .+++..+|++++.... .+...+
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12234467888888888888999888888888887776666 4566777777765432 233344
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-H
Q 007634 304 YNLGVAYGEML---KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-Y 378 (595)
Q Consensus 304 ~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~ 378 (595)
+.++..-...- +++.--..+++++.+...+ .-++..+-..-.+..-.+.|...|.++-+..-..-.++..-|.+ |
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44544433333 3666777788887764333 34555555666666677888888888876544333444433333 5
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhhhhH
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNR 442 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 442 (595)
...++.+-|...|+-.+...++.+..-......+..+|+-..|...|++++.. .|+...-.+.+
T Consensus 412 ~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 412 YCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred HhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 56788888999999888888888888888888888888888899999888876 55544444443
No 190
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=5.3e-08 Score=79.96 Aligned_cols=107 Identities=23% Similarity=0.241 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
+.+-..|..++..|+|++|..-|..++...|... -.+.+.|.++++++.++.|+..+.++++++|.+..++...|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3445568889999999999999999999988753 46778899999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
.+|.++..+++|+..|+++++.+|....+...
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999997765443
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.85 E-value=1.9e-06 Score=75.11 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.+.-++..|...++.|++++|+..|+.+...+|.. ..+...++..+++.+++++|+...++-+.+.|.++.+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---- 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---- 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh----
Confidence 56789999999999999999999999999998875 46889999999999999999999999999999988763
Q ss_pred HHHHHhHHHHHHh--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007634 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (595)
Q Consensus 158 ~~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 229 (595)
.+++..|.++... .-..+|+..|+..+...|++.-+--.... +..+... -..--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 3355555544322 22345666667777777765322111111 0111111 123345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhh
Q 007634 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGT 274 (595)
Q Consensus 230 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~ 274 (595)
.+|..|.+.|.+..|+.-++.+++..|+.. ++...+..++..+|.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999987765 445555667777764
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.84 E-value=1.9e-07 Score=72.98 Aligned_cols=99 Identities=24% Similarity=0.155 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC---CHHH
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPA 193 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~ 193 (595)
.+++.+|.++-..|+.++|+..|++++......... ..++..+|..+...|++++|+..+++.+...|+ +..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~----~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADR----RRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 356666777777777777777777777655443321 334566666666667777777777777666666 5566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007634 194 YYNLGVVYSELMQYDTALGCYEKAAL 219 (595)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~ 219 (595)
...++.++...|++++|+..+-.++.
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66667777777777777777666553
No 193
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.83 E-value=1.1e-07 Score=90.85 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=107.1
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++...|.+...+...+..+...++++.|+++
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467899999999999988865 6667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
.+++++..|++...|..|+.+|...|++++|+..++.+
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999877754
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.82 E-value=1.6e-07 Score=73.40 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---cHHHHHHHH
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNLG 409 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 409 (595)
+.+.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34445555555555555555555555443222 334455555555555555555555555555444 344444455
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 007634 410 VLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al 429 (595)
.++...|+.++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555554444
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.80 E-value=2.9e-05 Score=78.74 Aligned_cols=227 Identities=11% Similarity=0.001 Sum_probs=167.0
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 007634 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (595)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (595)
...+++.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++... +..+-.+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t-------Lq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT-------LQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH-------HHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999999998887776666665444 5666778888899
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHH---------
Q 007634 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK-NRGDLE--------- 242 (595)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~--------- 242 (595)
+++|..+|++++..+|+ ......+-.+|.+.+.|.+-.+.--+..+..|..+-.+.....+.. .....+
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999999999 8888888889999999888777777777788887654444433333 332222
Q ss_pred HHHHHHHHHHhcC-CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH-Hh-hCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 243 SAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-LY-YNWHYADAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 243 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~~~la~~~~~~~~~~~A 319 (595)
-|....++.++.. +-.. .+.+...+ .+....+.+++|.+.+..- .+ ..+.+..........+...+++.+-
T Consensus 172 LA~~m~~~~l~~~gk~~s-----~aE~~Lyl-~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIES-----EAEIILYL-LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred HHHHHHHHHhccCCccch-----HHHHHHHH-HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 3445556665555 2111 11111111 2334478899999998433 33 3344455555667788888999999
Q ss_pred HHHHHHHHhhCCCC
Q 007634 320 IVFYELAFHFNPHC 333 (595)
Q Consensus 320 ~~~~~~~l~~~~~~ 333 (595)
.+...+++...+++
T Consensus 246 ~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 246 FELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999988887
No 196
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.2e-07 Score=77.91 Aligned_cols=103 Identities=27% Similarity=0.316 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
.-|.-++..|+|++|..-|..|+.+.|..+ ..+.+.|.++.+++.++.|+..+.++++++|.+..++...|.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 345556666677777777777777666542 356677777888888888888888888888887788888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 414 DAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
++..+++|++-|++.++.+|....++..
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 8888888888888888888877766544
No 197
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=0.0002 Score=68.78 Aligned_cols=374 Identities=15% Similarity=0.054 Sum_probs=232.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 72 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
++-++.+|.+..+|+.+-.-+..+ -+++..+.|++.+...|..+.+|.......+..++|+.-...|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 667889999999999999887766 9999999999999999999999999999999999999999999999875332 23
Q ss_pred HHHHHHHHHHHhHHHHHHhCChHHHHHHHHH----HH---hhCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHH
Q 007634 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYE----AL---KIDPHYAPAYYNLGVVYS---------ELMQYDTALGCYE 215 (595)
Q Consensus 152 ~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~----~l---~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~ 215 (595)
.|.. | +..+-...++...+....-+ ++ -.++.....|...+..+. ...+.+.-.+.|+
T Consensus 88 LW~l----Y--l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 88 LWKL----Y--LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHHH----H--HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 2221 1 12222333443333322222 22 235666666666555443 2335666778888
Q ss_pred HHHHhCCCCHH-HHH-------------HHHHHHHHcCCHHHHHHHHHHHHhc-----------CCCcHHHHhhHHHHHH
Q 007634 216 KAALERPMYAE-AYC-------------NMGVIYKNRGDLESAIACYERCLAV-----------SPNFEIAKNNMAIALT 270 (595)
Q Consensus 216 ~al~~~~~~~~-~~~-------------~la~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~ 270 (595)
+++..--.+.+ .|. ..-.+-.....|..|...+++...+ .|.....-......+.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 88764332221 111 1111222344566666666665433 1111111111112221
Q ss_pred Hhhhhhh------hcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHh
Q 007634 271 DLGTKVK------LEGD--INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------FDMAIVFYELAFH 328 (595)
Q Consensus 271 ~l~~~~~------~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~l~ 328 (595)
++-.... ..|. -..-.-.+++++..-+-.+++|+..+..+...++ -+++..+|++++.
T Consensus 242 n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 242 NWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 1111111 1111 1223345667777777778888776666666555 6788888888886
Q ss_pred hC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 007634 329 FN-PHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (595)
Q Consensus 329 ~~-~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (595)
.- ..+...++.++..-...- +++.....+++++.+...+ .-++..+-..-.+..-.+.|...|.++-+..-..-.
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 53 334445555554443333 3777778888888774433 345666666666777788899999999776444334
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCC
Q 007634 404 AYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (595)
Q Consensus 404 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 453 (595)
++..-|.+ |.-.++.+-|...|+-.+...++.+......+.-+.++.+.+
T Consensus 402 VfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 402 VFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcch
Confidence 44433333 456899999999999999999999988777766666665543
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.78 E-value=1.6e-07 Score=82.53 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (595)
.++.|.-++..|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5667777777788888888888888887765 5678888888888888888888888888876655 578888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
+...+|+.++|...|+++++..|+.+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888888888888888887766543
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.78 E-value=1.9e-06 Score=70.22 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
+++.......+.+...|. ..-.+.+|..+...|++.+|...|++++. +...++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 444444444555555554 34567899999999999999999999986 4677889999999999999999999999999
Q ss_pred HHccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 360 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 360 al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
..+.+|. .++....+|.++...|++.+|...|+.++...|+ +++....+..+.++|+..+|..-+....+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999875 4778888999999999999999999999999987 78888889999999998888877666544
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.76 E-value=2.8e-08 Score=70.34 Aligned_cols=55 Identities=27% Similarity=0.446 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 3344444444444444444444444444444444444444444444444444333
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.74 E-value=5.5e-08 Score=91.90 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
+|+++..++++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55566666666666666666666666666666666666543 666666666666666666666666665
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.73 E-value=7.5e-08 Score=69.23 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=51.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
..+++..++|++|+..+++++..+|+++..+..+|.++..+|++++|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777777777777766555443
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.69 E-value=1.2e-07 Score=68.18 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=35.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.+|...+++++|++++++++..+|+++..+..+|.++..+|++.+|...++++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 445555555555555555555555555555555555555555555555555555555555444
No 204
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.3e-05 Score=68.07 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH
Q 007634 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175 (595)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~ 175 (595)
+.+++|.++|.++ |..|....++..|-..|.++-+..-... .....+..|...+++|.+ .+..+
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~-skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAG-SKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHhhc-cChHH
Confidence 4667777777665 3334444444555445544433221111 001113334444555444 47888
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHH
Q 007634 176 GIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 176 A~~~~~~~l~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~ 242 (595)
|+.++++++++..+. +..+..+|.+|..- .++++|+.+|+++-+.... ....+...+..-...++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888887775543 23345788888765 8999999999999775433 2346677788888899999
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCH
Q 007634 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 300 (595)
+|+..|++.....-++....+..-..++..|.++....+.-.+...+++..+.+|...
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 9999999998877777666555555566666666666666666666666666666643
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.65 E-value=1.4e-06 Score=69.06 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNN 373 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~ 373 (595)
+..++.-|...+..|+|++|++.|+.+....|.. ..+...++.+|++.+++++|+..+++.++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3445555555555555555555555555544432 34455555555555555555555555555555442 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.|.+++.+.. ..+.... ..-...+...+|...|++.++..|++.-+.
T Consensus 90 ~gL~~~~~~~-----~~~~~~~--------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDE-----GSLQSFF--------------RSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhh-----hHHhhhc--------------ccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 4444433322 0000000 000111226688888888888888876543
No 206
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.61 E-value=0.00056 Score=64.37 Aligned_cols=373 Identities=14% Similarity=0.045 Sum_probs=205.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
+...|-.+.+++++.+|..+|.++.+...+++ +.+.++-...+-+++.+.-...+-..-+..|..+....-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34578889999999999999999988655543 3444444455667777777777777777889888888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH--HHhHHHHHHhCChHHHHHHHHHHHhhC-C----CCHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVL--TDLGTSLKLAGNTQDGIQKYYEALKID-P----HYAP 192 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~------~~~~a~~~--~~l~~~~~~~~~~~~A~~~~~~~l~~~-~----~~~~ 192 (595)
.++.+.+.+|++.+....+.-...... .......+ ...+.++...|.+.++...+++.+..- + -+.+
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 999999999999988776542221111 11111111 235778889999999999999887652 2 2333
Q ss_pred HHH----HHHHHHHH----cCCHHHHHHHHHHHH-------Hh--------CCCC---------------------HHHH
Q 007634 193 AYY----NLGVVYSE----LMQYDTALGCYEKAA-------LE--------RPMY---------------------AEAY 228 (595)
Q Consensus 193 ~~~----~la~~~~~----~g~~~~A~~~~~~al-------~~--------~~~~---------------------~~~~ 228 (595)
.+. .+|..|+- ....+-+..+|+.++ .. .|.. ..++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 333 34444432 122222222332221 11 1110 0111
Q ss_pred HHHHHHHH--------------HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 007634 229 CNMGVIYK--------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (595)
Q Consensus 229 ~~la~~~~--------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 294 (595)
.+..+.|. -..+.+++....+..... +.......+...+..+-....++++...|..++.-...
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~--~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASS--KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 11110000 011223333332222211 11112222222222222333456666777666666655
Q ss_pred hCCCCHH-----------------------------------------------HHHHHHHHHHhcCC-HHHHHHHHHHH
Q 007634 295 YNWHYAD-----------------------------------------------AMYNLGVAYGEMLK-FDMAIVFYELA 326 (595)
Q Consensus 295 ~~~~~~~-----------------------------------------------~~~~la~~~~~~~~-~~~A~~~~~~~ 326 (595)
.+|+... -+..-|.-+.+.|. -++|+..++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5554321 11222333344444 56667777766
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHc---------cCC---CCHHHHHHH--HHHHHhcCCHHHHHHH
Q 007634 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS---------IKP---NFSQSLNNL--GVVYTVQGKMDAAAEM 390 (595)
Q Consensus 327 l~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~---------~~~---~~~~~~~~l--a~~~~~~g~~~~A~~~ 390 (595)
++..+.+.+.-+..-.. -...|.+|+. .+-+.+. +.| .+.+.-+.+ |..++..|+|.++.-+
T Consensus 407 l~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 66666654333221111 1112222221 1111111 111 123333334 3446788999999888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
-.=..++.| ++.++..+|.++....+|++|..++...
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 888888899 6999999999999999999999887654
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=3.5e-05 Score=66.69 Aligned_cols=227 Identities=14% Similarity=0.129 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALER-------------PMY------AEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
....|...-.++.++..+++|..-+...-+.+ |+. .......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34556666667777777777776666554332 111 12334456667777777777666555
Q ss_pred HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 007634 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (595)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 330 (595)
....-.+ +-.........+..++.+++-+ ..+.+.+..++.-.|+|.-.+..+.+.++.+
T Consensus 148 L~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 4332111 1111111223355666666554 4567788889999999999999999999987
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 007634 331 -PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----K--PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (595)
Q Consensus 331 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (595)
|..+.....+|.+..+.|+.+.|..+++..-+. + .....+..+.+.++.-.+++.+|...+.+++..+|.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 667888899999999999999999999855432 2 233457778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
+..+.|.|+.-.|+..+|++..+.+++..|...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999754
No 208
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=8.9e-06 Score=69.01 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhc
Q 007634 315 KFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (595)
Q Consensus 315 ~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~ 381 (595)
+.++|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+..... ...+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 4455555555554443322 23344677777654 78888888888887664332 33566677777888
Q ss_pred CCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYA-------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
++|.+|+..|++.....-++. ..++.-|.|+.-..+.-.+...+++..+++|...+.+...++
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 999999999999877654442 345667778888899999999999999999999888766543
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00013 Score=63.24 Aligned_cols=230 Identities=14% Similarity=0.077 Sum_probs=161.4
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhC-------------CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKID-------------PHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~-------------~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
.-.++.+...+++|..-+...-+.+ |+. .......|.+....|+..+.+.-+......
T Consensus 75 r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~--- 151 (366)
T KOG2796|consen 75 RLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTV--- 151 (366)
T ss_pred HHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH---
Confidence 3344455566666666555443332 211 223445577777888888877766655332
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-CCCHHH
Q 007634 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADA 302 (595)
Q Consensus 224 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 302 (595)
...+-.........+..+..+++-+ ..+.+.+..+..-.+.|.-....+.+.++.+ |..+..
T Consensus 152 ----V~~ii~~~e~~~~~ESsv~lW~KRl-------------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 152 ----VSKILANLEQGLAEESSIRLWRKRL-------------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred ----HHHHHHHHHhccchhhHHHHHHHHH-------------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 1112222233333355555555533 2333344444555778999999999999888 667888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (595)
...+|.+..+.|+.+.|..++++.-+.. .....+..+.+.++.-.+++.+|...+.+++..+|.++.+.++.|.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 9999999999999999999999665432 2345677788889999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHH
Q 007634 377 VYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLY 412 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 412 (595)
|+.-.|+..+|++.++.+++..|... ...++|..+|
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 99999999999999999999999743 3444454443
No 210
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.60 E-value=8.9e-06 Score=78.17 Aligned_cols=104 Identities=26% Similarity=0.344 Sum_probs=92.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 007634 341 GVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (595)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (595)
|..+...|+...|+.++..|+...|... ....+||.++..-|...+|-..+.+++.++...+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3444567999999999999999988754 467899999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 420 LAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 420 ~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
.|++.|++|++++|+++.....+.+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999999987766544
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.59 E-value=1.6e-06 Score=66.03 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHH
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLY 412 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 412 (595)
+-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 33456667777888888888888888888888888888888888888888888888888875433 35778888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Q 007634 413 RDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
..+|+.+.|..-|+.+.++-...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 88898888888888888876543
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.59 E-value=4.6e-06 Score=63.59 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc----HHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCG 123 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 123 (595)
...+-..|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+..+|+.++|++.+++++++.... -.++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 34566678888899999999999999999999999999999999999999999999999999986543 24678889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPS 148 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~ 148 (595)
.+|...|+-+.|...|+.+-++...
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999988877654
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.57 E-value=3.4e-05 Score=63.12 Aligned_cols=147 Identities=17% Similarity=0.140 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHhCChHH
Q 007634 97 MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175 (595)
Q Consensus 97 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~ 175 (595)
+.+....-..+.+...|.. .-.+.+|......|++.+|...|++++.- ...+... +..+++.....+++..
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~-------lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAM-------LLGLAQAQFAIQEFAA 142 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH-------HHHHHHHHHhhccHHH
Confidence 4444444444444444432 23556677777777777777777776652 2233322 4555556666677777
Q ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 176 GIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 176 A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
|...+++..+.+|. .++....+|..+...|.+.+|...|+.++...|+ +.+....+..+..+|+.++|..-+....
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 77777777776664 4566667777777777777777777777777765 5666666777777777766665554443
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.54 E-value=8.2e-07 Score=84.15 Aligned_cols=72 Identities=29% Similarity=0.339 Sum_probs=50.2
Q ss_pred ccccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 007634 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 40 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (595)
++...+..+..++.+|..++..|+|++|+..|+++++.+|++.++ |+++|.+|..+|++++|+.+++++++.
T Consensus 67 ~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 67 GSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455667777777777777777777777777777777776643 777777777777777777777777765
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.52 E-value=1.5e-07 Score=68.66 Aligned_cols=64 Identities=34% Similarity=0.493 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP----TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
..++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445566666666666666666666666654 11 12456667777777777777777777777654
No 216
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.7e-07 Score=76.84 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=96.4
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+...+.+-..|..++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+....++.+|
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 007634 124 ILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
.+......+++|+..++++..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999665
No 217
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.50 E-value=0.00029 Score=69.93 Aligned_cols=262 Identities=15% Similarity=0.149 Sum_probs=155.3
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHH------HHhh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYE------ALKI----DPHY-APAYYNLGVVYSELMQYDTALGCYEKAALE----- 220 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~------~l~~----~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 220 (595)
+.+|-..|.++.+..++++|+++|++ ++++ .|.. ...-...|.-+...|+++.|+..|-.+-..
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 45566778888889999999999875 3333 2332 222334577788888888888877654110
Q ss_pred --------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 221 --------------------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 221 --------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
.......|-.++.-|...|+++-|.+.|.++-. ....-..|.+.|
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~---------------~~dai~my~k~~ 805 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL---------------FKDAIDMYGKAG 805 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch---------------hHHHHHHHhccc
Confidence 000112233445556666666666666554311 111112233456
Q ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH------HHHhh-----------------CCCC-HH
Q 007634 281 DINQGVAYYKKALYYNWH-YADAMYNLGVAYGEMLKFDMAIVFYE------LAFHF-----------------NPHC-AE 335 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~------~~l~~-----------------~~~~-~~ 335 (595)
++++|.++..+.. .|+ ....|...+.-+-..|+|.+|.++|- +++.+ .|+. .+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 6776666655543 233 23466777888889999999998873 33332 1221 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC------CC-----------------CHH--HHHH---------HHHHHHhc
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIK------PN-----------------FSQ--SLNN---------LGVVYTVQ 381 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~-----------------~~~--~~~~---------la~~~~~~ 381 (595)
....+|.-+...|+...|...|-++-... .. +.. +.+. -..++-+.
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh
Confidence 66778888999999999999887764431 10 000 0000 01122233
Q ss_pred CCHHHHHHHH------HHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 382 GKMDAAAEMI------EKAIAA-----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 382 g~~~~A~~~~------~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
|-.+.|+... +-++.+ ....++++..++..+...|++++|-+.|-.+++++.-+
T Consensus 964 gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 964 GLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 4444443321 111111 22336788899999999999999999999999998755
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.48 E-value=3e-07 Score=67.05 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
|+-..++..+|.+|..+|++++|+.+|++++++.....+.....+.++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44567889999999999999999999999997733333334445777888888888888888888888888764
No 219
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=9e-05 Score=63.55 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=80.8
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 232 (595)
.+..-+.++....++++|..++.++.+-..++ +.++-..+.+......+.++..+++++ .
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA--------------s 98 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA--------------S 98 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------H
Confidence 34445555555666777666666665433222 122222333333333444444444433 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 007634 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNL 306 (595)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l 306 (595)
..|.+.|..+-|-..++++-+.-. ..++++|+.+|++++...... .+.+...
T Consensus 99 ~lY~E~GspdtAAmaleKAak~le----------------------nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKALE----------------------NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhh----------------------cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 334455555555555555433221 235666666666666543322 2334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
+.++.+..++++|-..+.+-... .++....+.....++....+|..|..+++...++
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 56666666666665555443322 1222233333334444445666666666555443
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.42 E-value=0.00049 Score=68.87 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 007634 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAE 389 (595)
Q Consensus 314 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~ 389 (595)
...+.|.+.+....+..|+..-.++..|.++...|+.++|++.|++++.....- .-.++.+++++..+.+|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344555566666666666666666666666666666666666666655332221 2356667777777777777777
Q ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCC
Q 007634 390 MIEKAIAANPTY-AEAYNNLGVLYRDAGSI-------SLAIDAYEQCLKIDP 433 (595)
Q Consensus 390 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p 433 (595)
++.+..+.+.-+ .-..+..|.++...|+. ++|.++|.++-.+..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 777777654432 23445566677777777 777777777765543
No 221
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.41 E-value=2.2e-06 Score=70.18 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL---DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (595)
++.|.+.++.....+|.+++.+++-|.++..+.++ .++.+ .+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 45666666666666777777777666666554322 11111 1234444455
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 393 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+++.++|+..++++.+|.+|..++ .+++|..+|++|...+|++...+..+
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 555555555555555555555443 26789999999999999988766554
No 222
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=6e-05 Score=64.58 Aligned_cols=200 Identities=22% Similarity=0.191 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 307 (595)
+..-+..|...+++++|...+.++.+-..++. .++.-+..+-..+........+.++..+++++.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs-------------- 98 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------- 98 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------
Confidence 33344555555666666666666654443332 222333444444444444455556666655553
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhc
Q 007634 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (595)
Q Consensus 308 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~ 381 (595)
..|...|..+.|-..++++-+. ....++++|+++|++++.+-... .+.+...+.++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 2344445544444444444322 22335556666666655542221 23445556667777
Q ss_pred CCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhhhhHHHHhhhccC
Q 007634 382 GKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINE 451 (595)
Q Consensus 382 g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~ 451 (595)
.++++|-..+.+-... .++....+.....+|.-..++..|..+|+...++ .|++..+..++ +..+..
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL---L~ayd~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL---LTAYDE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH---HHHhcc
Confidence 7777766665554322 2333344555555556666777777777776654 34444444443 344566
Q ss_pred CCcHHHHHH
Q 007634 452 GHDDKLFEA 460 (595)
Q Consensus 452 ~~~~~~~~~ 460 (595)
|+.++..+.
T Consensus 241 gD~E~~~kv 249 (308)
T KOG1585|consen 241 GDIEEIKKV 249 (308)
T ss_pred CCHHHHHHH
Confidence 666555443
No 223
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.40 E-value=0.0028 Score=62.33 Aligned_cols=345 Identities=9% Similarity=-0.061 Sum_probs=223.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 007634 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY-KDEGRLVEAAESYHK 141 (595)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 141 (595)
..+.+...|...+...|.-...|...|..-.+.|..+.+.+.|++++.--|-....|..+-... ...|+...-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3466777888888899999999999999999999999999999999999998877776654433 346777777888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHH
Q 007634 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYE 215 (595)
Q Consensus 142 ~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~ 215 (595)
|......+... ...|-..-.....++++..-...|++.++........++..=.-+... -..+++...-.
T Consensus 140 A~~~vG~dF~S----~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLS----DPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhc----cHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 88776553322 112333333446678888888888888875433322222211111111 11222222111
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 007634 216 KAALERPMYAEAYCNMGVIYKNRGDLES-AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (595)
Q Consensus 216 ~al~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 294 (595)
..... ...-..+...+ -.......-...+........+.......-.++.......+....++..+.
T Consensus 216 ~~~~~------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 216 DVAER------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred hHHhh------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 11100 00000001111 111111111111111111111222222222223333344555555555554
Q ss_pred h-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-C
Q 007634 295 Y-----NWH---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-P 365 (595)
Q Consensus 295 ~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~ 365 (595)
. .|. ....|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+.. |
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 3 222 245677777888899999999999999998888889999999999999999999999998888874 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (595)
..+.+...-+..-...|++..|...+++..+..|+..++-..........|+.+.+..
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 6677888888888889999999999999999889998888888888999999998884
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.38 E-value=0.001 Score=66.67 Aligned_cols=150 Identities=18% Similarity=0.066 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHH------HHHHHHHHH----HcCCHHHHHHHHHHHHccCCCCHHHHH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEA------CNNLGVIYK----DRDNLDKAVECYQMALSIKPNFSQSLN 372 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~------~~~la~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~ 372 (595)
..+-.+.--.|+-+.+++.+.++.+...-. +-+ |+.....+. .....+.|.+.++...+..|+..-.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 334444445577777777777776522111 111 111111111 245788999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhh
Q 007634 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (595)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 448 (595)
..|.++...|+.++|++.|++++...... .-.++.++.++..+++|++|..+|.+..+.+.- ..+.+.++.+.++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 99999999999999999999988543332 246788999999999999999999999996655 5677777788888
Q ss_pred ccCCCc
Q 007634 449 INEGHD 454 (595)
Q Consensus 449 ~~~~~~ 454 (595)
...++.
T Consensus 351 ~~l~~~ 356 (468)
T PF10300_consen 351 LMLGRE 356 (468)
T ss_pred Hhhccc
Confidence 877766
No 225
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.35 E-value=0.0039 Score=62.35 Aligned_cols=48 Identities=19% Similarity=0.028 Sum_probs=37.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (595)
....|+|+.|..+++. ++..|+....|..++...+..|+.--|..+|.
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfa 501 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFA 501 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3678999999987765 57778888888888888888887766666654
No 226
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.32 E-value=8.6e-06 Score=66.76 Aligned_cols=94 Identities=26% Similarity=0.299 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH---HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---
Q 007634 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK---LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ--- 206 (595)
Q Consensus 133 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~---~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--- 206 (595)
+.|.+.++.....+|.+.+....-+.++..++.... ...-+++|+.-|++++.++|+...+++.+|.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 344444444444444444444433433433333211 12346788889999999999999999999999987653
Q ss_pred --------HHHHHHHHHHHHHhCCCCHH
Q 007634 207 --------YDTALGCYEKAALERPMYAE 226 (595)
Q Consensus 207 --------~~~A~~~~~~al~~~~~~~~ 226 (595)
|++|..+|+++...+|++..
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 55666666666666666543
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.31 E-value=0.0025 Score=59.31 Aligned_cols=131 Identities=21% Similarity=0.089 Sum_probs=105.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhh----CCC----------
Q 007634 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DPH---------- 189 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~----~~~---------- 189 (595)
....|+++.|..++.|+-... ..++.....++.++++.|......+ +++.|...++++.+. .+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999997766 6667777889999999999999999 999999999999887 211
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 256 (595)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1356778889998887755 456666666677788888887777777778999999999999887654
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.30 E-value=0.00022 Score=68.21 Aligned_cols=190 Identities=16% Similarity=0.091 Sum_probs=119.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRL 132 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 132 (595)
.......+..+...-++.-+++++.+|+.+.++..+|.-. .....+|.++|+++++...... .........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccch
Confidence 3445557788888888888888888888888888877532 2346778888888776533211 111111111111
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHH
Q 007634 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 133 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A 210 (595)
- ......+.+. +..+-..++.+..+.|+.++|++.++..++..|. +..++.++..++...+.|.++
T Consensus 247 ~-------e~~~~Rdt~~-----~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 247 W-------EAWHRRDTNV-----LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred h-------hhhhccccch-----hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 1 1111111111 1223566888888999999999999999987765 466888999999999999999
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHhcCCCcHH
Q 007634 211 LGCYEKAALE-RPMYAEAYCNMGVIYKNR-GD---------------LESAIACYERCLAVSPNFEI 260 (595)
Q Consensus 211 ~~~~~~al~~-~~~~~~~~~~la~~~~~~-~~---------------~~~A~~~~~~al~~~~~~~~ 260 (595)
...+.+.-++ -|..+...+..+.+..+. ++ -..|.+.+.++++.+|.-+.
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9888886433 245555555555443321 11 12356677777777776553
No 229
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.26 E-value=0.0017 Score=63.44 Aligned_cols=296 Identities=15% Similarity=0.069 Sum_probs=150.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHH
Q 007634 54 YANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--------QNACAHTHCGI 124 (595)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~ 124 (595)
.+++....|+|+. +.+.+...+ +..+..+..+......++++++....+++...-- ......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3566778888888 333333322 2346667777777788999988888887765421 11111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChH--HHHHHHHHHHhh----CCCCHHHHHHHH
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--DGIQKYYEALKI----DPHYAPAYYNLG 198 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~--~A~~~~~~~l~~----~~~~~~~~~~la 198 (595)
.+......+++..+....... ......+...|...-.. ...+++ +-+-.++..+-. .......+...+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 111222333333333211110 11111111112111100 011111 111111222211 344567889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (595)
.+..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.............. ....+.
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~--~~~~~~ 231 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA--ELKSGL 231 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH--HHhhcc
Confidence 999999999999999999887652 25778888999999999999999999888872111100000000 000000
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 348 (595)
.+.............. ......++..+|...... +..++++..|.++++.+|....+|..+|..+...-
T Consensus 232 ~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 232 LESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred ccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 0000000000000000 000133445555555555 56666666666666666666666666665554321
Q ss_pred -----------------CHHHHHHHHHHHHccCCC
Q 007634 349 -----------------NLDKAVECYQMALSIKPN 366 (595)
Q Consensus 349 -----------------~~~~A~~~~~~al~~~~~ 366 (595)
-...|+..|-+++...+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 307 ESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 124588888899888777
No 230
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0043 Score=64.36 Aligned_cols=320 Identities=11% Similarity=0.087 Sum_probs=173.6
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG---NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
.+++..--....++..+-..+-++++++++-.+.. +......+-... -.-+.....++.++.-..+.. .+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCCch------hH
Confidence 34555555556677777777888888887643321 222222222221 123344455555554322221 24
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (595)
|.+....+-|++|...|++- .-+..+... .....+..+.|.++.+++ +.+.+|..+|.+..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~V----------Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQV----------LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQL 1115 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh----cccHHHHHH----------HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHH
Confidence 56666777788888888764 112222111 112235666666666554 34778888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH------------
Q 007634 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT------------ 270 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------ 270 (595)
+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++.-+-+...... .-..+..+|.
T Consensus 1116 ~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHHHHHhchHHHHHHHh
Confidence 888888888888765 6677788888888888888888888877765533211 1111111221
Q ss_pred ---------HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 271 ---------DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341 (595)
Q Consensus 271 ---------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 341 (595)
..|+-....+.|+.|.-+|.. ..-|..++..+..+|+|..|...-+++- +...|...+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ktWK~Vc 1256 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN-----STKTWKEVC 1256 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHH
Confidence 223333344445544444432 2345556666666666666666665552 233444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 007634 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (595)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (595)
..+...+.+.-|.-+=-..+ -+++-+-.+...|...|-+++-+..++.++-+...+...+..||.+|.+
T Consensus 1257 faCvd~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNII----VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhchhhhhHHHhcCceEE----EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 44433333333221110000 1133344555566666777777777666666655555555666655544
No 231
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00011 Score=66.05 Aligned_cols=150 Identities=13% Similarity=-0.038 Sum_probs=85.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKAV 354 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~---~~~~~~la~~~~~~~~~~~A~ 354 (595)
.|+..+|...+++.++..|.+.-++..--.+++..|+...-...+++++.. +++. ..+.-.++..+...|-|++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 455556666666666666666555555555666666666666666666554 4443 333444555556666666666
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+.-++++++++.+..+...++.++...|++.++.++..+.-..-... ..-|...+.++...+.++.|++.|.+-
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 66666666666666666666666666666666666655432221110 123444555666666666666666543
No 232
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.5e-06 Score=71.67 Aligned_cols=89 Identities=22% Similarity=0.225 Sum_probs=43.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 386 (595)
|..++...+|+.|+.+|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|........+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 34444444445555555555555554444444555555555555555555555555555444444555555444445555
Q ss_pred HHHHHHHHH
Q 007634 387 AAEMIEKAI 395 (595)
Q Consensus 387 A~~~~~~al 395 (595)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 555544443
No 233
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.21 E-value=3.7e-05 Score=71.42 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666666666778888888888876666667888888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 381 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.|+.+.|...|++++..-|... .+|......-...|+.+...+..+++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 8888888888888887766544 5777788888888888888888888888888754
No 234
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.9e-05 Score=65.67 Aligned_cols=111 Identities=18% Similarity=0.098 Sum_probs=97.1
Q ss_pred ccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------cCCCCH----------HHHHHHHHHHHHhCCHHHHHH
Q 007634 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLE--------KDSGNV----------EAHIGKGICLQMQNMGRLAFD 103 (595)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~ 103 (595)
..+......+-..|+.++..|+|.+|...|+.++. ..|..+ ..+.+++.|++..|+|-++++
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 33445667788899999999999999999998875 245443 467889999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
....++..+|.+..+++..|..+...-+.++|...|.++++++|.-...
T Consensus 252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999999999975443
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.17 E-value=0.001 Score=62.87 Aligned_cols=125 Identities=12% Similarity=0.035 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCcHHH
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYER-CLAVSPNFEIA 261 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~~~~~~~ 261 (595)
.++...++-..|....+|+.-+++.+.+-.. -++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4667778888899999999999999987666 45567788889999998 9999999999999 45556667777
Q ss_pred HhhHHHHHHHhhhh--hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 262 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 262 ~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
+...+.+|..+-.. .......++|+..|.++.+..|+ ...-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 77777777765432 12233477778888888777753 3334455555555554
No 236
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.16 E-value=0.015 Score=60.92 Aligned_cols=317 Identities=13% Similarity=0.031 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHcCCC----CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCC--cH----HHHHHHHHHHHHcCCHH
Q 007634 65 VDALALYEIVLEKDSG----NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDPQ--NA----CAHTHCGILYKDEGRLV 133 (595)
Q Consensus 65 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~ 133 (595)
..|+.+++-+++..+- .+.+.+.+|.+++ ...+++.|..++++++.+... .. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567777777743222 3457888999987 788999999999999887643 22 34566788888888877
Q ss_pred HHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCC
Q 007634 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPA----YYNLGVVYSELMQ 206 (595)
Q Consensus 134 ~A~~~~~~~l~~~~~~~~~-~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~----~~~la~~~~~~g~ 206 (595)
|...+++.++........ +...-. +.. .......+++..|++.++...... ..++.+ ....+.+....+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~fr-ll~-~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFR-LLK-IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHH-HHH-HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999998865552221 111111 111 122222379999999999988775 344333 3334666677788
Q ss_pred HHHHHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HhcCCCcH------------
Q 007634 207 YDTALGCYEKAALERP----------MYAEAYCNMGV--IYKNRGDLESAIACYERC---LAVSPNFE------------ 259 (595)
Q Consensus 207 ~~~A~~~~~~al~~~~----------~~~~~~~~la~--~~~~~~~~~~A~~~~~~a---l~~~~~~~------------ 259 (595)
.+++++.++++..... ....++..+-. ++...|++..+...+++. ++...+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~ 274 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP 274 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence 8888888888744221 12334444433 345667766666555443 22111110
Q ss_pred --------------------HHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC----------C----------
Q 007634 260 --------------------IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----------Y---------- 299 (595)
Q Consensus 260 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~---------- 299 (595)
......+.+|.--|......+..++|.++++++++.-.+ .
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred eecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 001112333444444555556665777777766643110 0
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 007634 300 ------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PH------CAEACNNLGVIYKDRDNLDKAVECYQ------ 358 (595)
Q Consensus 300 ------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~------ 358 (595)
....+..+.+.+-.+++..|....+.+.... |. .+..++..|..+...|+.+.|+..|.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 1134456666777888888888777766542 22 36677788888888888888888887
Q ss_pred --HHHccCCCC---HHHHHHHHHHHHhcCCH
Q 007634 359 --MALSIKPNF---SQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 359 --~al~~~~~~---~~~~~~la~~~~~~g~~ 384 (595)
.+....+.. .-+..++..++...+..
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSR 465 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhccc
Confidence 333333332 22445566666655543
No 237
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.15 E-value=0.0036 Score=64.39 Aligned_cols=177 Identities=23% Similarity=0.236 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcC--
Q 007634 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG-- 130 (595)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 130 (595)
+..+|..+++.+.+. .+..+...+|.++..- .+.+.|+.+|+.+.+. .-..+.+.+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887654 5788888999998765 5889999999999771 1125667888999998843
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 007634 131 ---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE- 203 (595)
Q Consensus 131 ---~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~- 203 (595)
++..|..+|.++-..... .+ .+.+|.++.... +...|.++|..+... .+..+.+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~--~a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP--DA-------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc--hH-------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 678899999999887544 33 344555554433 678999999888764 467888888888865
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 007634 204 ---LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (595)
Q Consensus 204 ---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 254 (595)
..+...|..++.++.+.. .+.+...++.++... +.++.+...+......
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 357889999999998887 455555555555433 6777666665555443
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.15 E-value=0.0036 Score=61.13 Aligned_cols=261 Identities=11% Similarity=0.087 Sum_probs=147.9
Q ss_pred HHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Q 007634 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIYK 236 (595)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~ 236 (595)
.+....|+|+.-.+..... ..+.....+..+......++++++..+++++...- +......+..-.-+.
T Consensus 6 eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 3445668888733332222 12234566666666778899999999888876531 111111111112222
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH--HHHHHHHHHHhh----CCCCHHHHHHHHHHH
Q 007634 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYY----NWHYADAMYNLGVAY 310 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~----~~~~~~~~~~la~~~ 310 (595)
...+.+++..+....... ......+...+...- -....+++ +-+-.++..+-. .......+...+.+.
T Consensus 83 ~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl--~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a 156 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRL--PNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA 156 (352)
T ss_pred HHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 333444444443221110 111111111111100 00011111 111111222211 334567888899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-C-C------------------
Q 007634 311 GEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-P-N------------------ 366 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~-~------------------ 366 (595)
.+.|+++.|...+.++...++ ..+.+....+.++...|+..+|+..++..+... . .
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 999999999999998887642 246788888999999999999999888877711 0 0
Q ss_pred --------------CHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---------
Q 007634 367 --------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS--------- 417 (595)
Q Consensus 367 --------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------- 417 (595)
...++..+|...... +..+++...|.++++.+|+...+|+.+|..+...=+
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~ 316 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEES 316 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 123555566666666 778888888888888888888888888877654321
Q ss_pred --------HHHHHHHHHHHHhcCCC
Q 007634 418 --------ISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 418 --------~~~A~~~~~~al~~~p~ 434 (595)
...|+..|-+++...++
T Consensus 317 ~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 317 SQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred chhHHHHHHHHHHHHHHHHHhhCCC
Confidence 13366666666666665
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.14 E-value=6.8e-06 Score=51.66 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (595)
++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444444
No 240
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=0.00012 Score=68.11 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
.|+...+...+.+..+.|..+|.++.+..+....+|...|...+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 356666777777778888888888886666677888888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
.|+.+.|..+|++++..-+..... ..+|......-...|+.+....+.+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~----~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQS----KKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHC----HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888888888888888876654311 223455555555667777777777776666665
No 241
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.12 E-value=0.00059 Score=66.16 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=94.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
.|..+...|+...|+.++..++...|... ....++|.++.+.|-...|-..+.+++.+....+..++.+|..+..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 45555678999999999999999888653 45778999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
+.|++.|+++++++|+++.+...|-.+-.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999988776665544
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00046 Score=62.20 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLT 161 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~a~~~~ 161 (595)
+-....+.+....|++.+|...+++.++..|.+.-++..--..++.+|+...-...+++++.. +++.+-.. .+.-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~s----Yv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYS----YVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHH----HHHH
Confidence 444555667778899999999999999999999999888889999999999999999999877 66654332 2233
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 007634 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKN 237 (595)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~ 237 (595)
.++-.+...|-+++|.+..++++++++.+..+...++.++...|++.++.+...+.-..-... ..-|...+.++..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 455667788999999999999999999999999999999999999999999988754332211 2235566888889
Q ss_pred cCCHHHHHHHHHHHH
Q 007634 238 RGDLESAIACYERCL 252 (595)
Q Consensus 238 ~~~~~~A~~~~~~al 252 (595)
.+.++.|+++|.+-+
T Consensus 260 ~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 GAEYEKALEIYDREI 274 (491)
T ss_pred ccchhHHHHHHHHHH
Confidence 999999999998754
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.09 E-value=8.4e-06 Score=51.24 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
+++.+|..+...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4444555555555555555555555555555555544444
No 244
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=7.1e-05 Score=64.13 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
...+.+++.|+...|+|-++++.....+..+|.+..+++..|.+....=+.++|...|.++++++|.-..+...
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 45678888999999999999999999999999999999999999988889999999999999999876555433
No 245
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.08 E-value=0.023 Score=59.67 Aligned_cols=409 Identities=15% Similarity=0.064 Sum_probs=243.8
Q ss_pred CchHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---c
Q 007634 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--NV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (595)
Q Consensus 46 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (595)
.++...+++|.+++ ...++++|...+++++..... .. .+.+.++.++.+.+... |...+++.++...+ .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 56778899999988 779999999999999876533 22 34556788888887777 99999999887554 1
Q ss_pred -HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---
Q 007634 116 -ACAHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--- 187 (595)
Q Consensus 116 -~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--- 187 (595)
....+.+ ...+...+++..|++.++....... .++.. ...+....+.+....+..+++++.++++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 2222222 2333334799999999999988763 33332 22234445566677788888888888774431
Q ss_pred ---CC----CHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHh---CC---C---C----------------------
Q 007634 188 ---PH----YAPAYYNLGV--VYSELMQYDTALGCYEKA---ALE---RP---M---Y---------------------- 224 (595)
Q Consensus 188 ---~~----~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~---~~---~---~---------------------- 224 (595)
+. ...++..+-. ++...|+++.+...+++. ++. .+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 11 2334444433 455677777776665544 221 11 0 0
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-------------------HHHhhHHHHHHHhhhhhh
Q 007634 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-------------------IAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 225 --------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------~~~~~~~~~~~~l~~~~~ 277 (595)
.-++..-|......+..++|.++++++++.-.+.. ........++...+....
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11233345566667777788888888775422111 111222344555666677
Q ss_pred hcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCC---HHHH
Q 007634 278 LEGDINQGVAYYKKALYYN---WH------YADAMYNLGVAYGEMLKFDMAIVFYE--------LAFHFNPHC---AEAC 337 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~~l~~~~~~---~~~~ 337 (595)
..+++..|....+.+.... |. .+..++..|..+...|+.+.|+..|. .+....+.. .-+.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 8899999998888777553 22 36688999999999999999999998 333333332 2344
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHccCCCCHHHHHHHHHH-----HH--hcCCHHHHHHHHHHHHHhC-C--Cc--
Q 007634 338 NNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQSLNNLGVV-----YT--VQGKMDAAAEMIEKAIAAN-P--TY-- 401 (595)
Q Consensus 338 ~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~la~~-----~~--~~g~~~~A~~~~~~al~~~-p--~~-- 401 (595)
.++..++...+.-.. +...++..-....+.+...+..+.. +. ..-...++...+..+++.. . ++
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 566666665554333 3344433222211122222222221 11 2223457777777777654 1 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhhhhhH----HHHhhhccCCCcHHHHH
Q 007634 402 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINEGHDDKLFE 459 (595)
Q Consensus 402 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~----~~~~~~~~~~~~~~~~~ 459 (595)
.-++..++..+. .|+..+.......+....... ....+.. ++...+-..|+.+++-.
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~ 598 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE 598 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 234555666666 788888887777777665544 4333321 22233555666665543
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.06 E-value=0.0065 Score=62.52 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLA 421 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A 421 (595)
+...+...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ....+++|.++..- .....|
T Consensus 454 ~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred chhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHH
Confidence 44555555555543 35567777777777654 35888888888887766 78888888887751 126788
Q ss_pred HHHHHHHHhcCCCC
Q 007634 422 IDAYEQCLKIDPDS 435 (595)
Q Consensus 422 ~~~~~~al~~~p~~ 435 (595)
..+|.++.+.+...
T Consensus 529 ~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 529 KRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHhcCchh
Confidence 88888887766553
No 247
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.04 E-value=0.023 Score=58.72 Aligned_cols=298 Identities=16% Similarity=0.076 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-----C
Q 007634 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-----Y 190 (595)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-----~ 190 (595)
.+.+..-+..+...|...+|+...-.+- ++.. .+.++.+.+.-+...++..- +...++.-|. +
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~---aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~ 414 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEM---AADLLEQLEWQLFNGSELSL----LLAWLKALPAELLAST 414 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHH---HHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhC
Confidence 5677777778888888888887655441 1111 23334444444444444432 2333333332 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
+......+.......++++|..++.++...-+. .....-..|.+....|++++|+++.+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-- 492 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-- 492 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--
Confidence 566677788888899999999999888665433 234556678888999999999999999999887754
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC----C--HHHHHHHHHHHHhcCC--HHHHHHHHHHHHh----h
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----Y--ADAMYNLGVAYGEMLK--FDMAIVFYELAFH----F 329 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~--~~~~~~la~~~~~~~~--~~~A~~~~~~~l~----~ 329 (595)
+.....++..+|......|++++|..+...+.+.... . ..+....+.++..+|+ +.+....+...-. .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3344566777888888899999999999888776322 2 2244556778888884 3333333333222 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCC--H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----KPNF--S-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY- 401 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 401 (595)
.|.........+.++...-+++.+.....+.++. .|.. . ..++.++.+++..|++++|...+.....+-.+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 3443334444444444333466666666665554 2222 2 233589999999999999999998887653222
Q ss_pred H------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 402 A------EAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 402 ~------~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
+ .++.-.......+|+.++|.....+
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 1222223334567888888888777
No 248
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.019 Score=59.82 Aligned_cols=239 Identities=16% Similarity=0.072 Sum_probs=128.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.|-++|...++.|...+|++.|-++ +++..+........+.|.|++-+.++.-+-+... .+..-..+...|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHH
Confidence 4455566666666666666666665543 3445555555556666666666666555544321 112222233334
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 206 (595)
.+.++..+-.+.. ..|+... ....|.-++..+.|+.|.-+|.. ..-|..++..+..+|+
T Consensus 1177 Akt~rl~elE~fi-----~gpN~A~--------i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGPNVAN--------IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHhchHHHHHHHh-----cCCCchh--------HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHH
Confidence 4444443333222 2343322 34456666666777777666643 3345667777777777
Q ss_pred HHHHHHHHHHHHHhC---------------------C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 207 YDTALGCYEKAALER---------------------P----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 207 ~~~A~~~~~~al~~~---------------------~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
|..|....+++-... . -+++-+-.+...|...|-+++-+..++.++.+...+...
T Consensus 1236 yQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgm 1315 (1666)
T KOG0985|consen 1236 YQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGM 1315 (1666)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHH
Confidence 777777666652210 0 023445566677888888888888888888776655555
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~ 320 (595)
...++..|... ++++-.+.++-....- -+....|..+..+|.+-..|+.|.
T Consensus 1316 fTELaiLYsky--------kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1316 FTELAILYSKY--------KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHhc--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 55555544432 3444444333222110 112345666666666666666553
No 249
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.03 E-value=1.1e-05 Score=76.48 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
++.+-..|..++..+.|+.|+.+|.++++++|+++..+-..+.++.+.+++..|+.-+.++++.+|....+++..|....
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
..+.+.+|...|++...+.|+.+.+...
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 9999999999999999999999887443
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.01 E-value=0.00088 Score=64.19 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLY 412 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~ 412 (595)
+...+|.+..+.|+.++|++.++..++..|. +..+..+|..++..++.|.++...+.+.-++ -|+.+...+.-+.+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345566666666666666666666655543 2445666666666666666666666654322 234444444443332
Q ss_pred HH-------------cC---CHHHHHHHHHHHHhcCCCChhhh
Q 007634 413 RD-------------AG---SISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 413 ~~-------------~g---~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+ .| --..|.+...+|++.||.-+...
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 21 11 12357899999999999887654
No 251
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.01 E-value=7.1e-06 Score=47.85 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=20.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (595)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666664
No 252
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=8.2e-05 Score=66.84 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
.++.+-..|+.+++.++|..|+..|.+.|+..-. ++..|.+.|-|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5677788999999999999999999999997443 456889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPS 148 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~ 148 (595)
+.|++.+.++.+|..+++..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.97 E-value=0.015 Score=54.13 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=86.5
Q ss_pred HhCCHHHHHHHHHHHHHcC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-------CCCCHHHHHHHH
Q 007634 94 MQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECLA 157 (595)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~-------~~~~~~~~~~~a 157 (595)
..|+.+.|..++.++-... |+. ...++..|......+ ++++|..+++++.+. ....++......
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4555555655555554432 211 234555666666666 777777777777665 233445555667
Q ss_pred HHHHHhHHHHHHhCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007634 158 IVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 222 (595)
.++..++.++...+.++ +|...++.+....|+.+..+...-.+....++.+++.+.+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 77888899988877654 455566666666788888886666777778999999999999988754
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00073 Score=60.36 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=46.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 181 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
++.+..+|++..+.+.++..+...|+.++|++.+-..++.+.. +..+...+-.++...|.-+.+...+++
T Consensus 226 ~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 226 QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4445567777888888888888888888888877777766443 455666666666666644444444443
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.93 E-value=2e-05 Score=46.33 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777775
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.0035 Score=56.21 Aligned_cols=58 Identities=24% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (595)
..+..+......|++.+|...|..++...|++.++...++.|+...|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3444455555555555555555555555555555555555555555555555554443
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.91 E-value=0.0062 Score=57.73 Aligned_cols=178 Identities=12% Similarity=0.009 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHK-ALSADPSYKPA 152 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~~~~~~~ 152 (595)
+++....+-.+|....+|+.-++..+..-.. -++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999988887666 45567788889999998 9999999999999 45556677787
Q ss_pred HHHHHHHHHHhHHHH--HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 007634 153 AECLAIVLTDLGTSL--KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (595)
Q Consensus 153 ~~~~a~~~~~l~~~~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 220 (595)
....+.++..+-... ......++|+..|.++.+.+|+. ..-.+++.++...|...+....+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 777777776654331 22345899999999999999754 334556666666665433332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 007634 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 221 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 259 (595)
.-.+...+..++.+..-.|++++|.+.++++++..|..-
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 123455666778888889999999999999999987643
No 258
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.91 E-value=1e-05 Score=47.17 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=17.4
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 388 (595)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 259
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.91 E-value=1.5e-05 Score=75.51 Aligned_cols=131 Identities=16% Similarity=0.234 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (595)
.-.-+...+..+.++.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34456667777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
++.+|...|++...+.|+++.+...+..|-.. -...-|++++-..++++..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~-----vs~~~fe~ai~~~~~d~~s 137 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKI-----VSEEKFEKAILTPEGDKKS 137 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH-----HHHHhhhhcccCCccCCcc
Confidence 88888888888888888888777766665433 2344556666555544433
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.90 E-value=3.4e-05 Score=45.40 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
++++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 566777777777777777777777777777764
No 261
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0074 Score=52.82 Aligned_cols=192 Identities=14% Similarity=0.104 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH
Q 007634 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175 (595)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~ 175 (595)
.+|.++..+|+.++..+..+ ..|+..-..++.++|.+-..+...-.++..++ .+..+
T Consensus 40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~ 96 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNK 96 (318)
T ss_pred hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHH
Confidence 34555666665555544433 44556666777778877776655544444443 45677
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 176 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
-++++.+.++.+|.+..+|...-.+....|++. .-++..+.++..+..+..+|...-.+....+.++.-+.+..+.++.
T Consensus 97 El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 97 ELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 788888888888888888888888888888877 7788888888888888888888888888888888888888888877
Q ss_pred CCCcHHHHhhHHHHHHH-hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 007634 255 SPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312 (595)
Q Consensus 255 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 312 (595)
+-.+..+|...-.+... .| .......+.-+.+..+.+...|++..+|..|.-++..
T Consensus 177 Di~NNSAWN~Ryfvi~~~~~--~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 177 DIRNNSAWNQRYFVITNTKG--VISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hhhccchhheeeEEEEeccC--CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 76655555432211111 00 0001123445566667777778877777777766664
No 262
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.051 Score=62.30 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC----------
Q 007634 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT---------- 400 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~---------- 400 (595)
...+.|...|++....|+++.|..++-.|.+.. -+.+....|..+...|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 347788888888888888888888887777765 56777888888888888888888888888652 22
Q ss_pred c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhhhhh
Q 007634 401 Y------AEAYNNLGVLYRDAGSI--SLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 401 ~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
. ..+...++......|++ ..-+++|..+.++.|...+.+..
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~ 1794 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYH 1794 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceee
Confidence 1 12344445555555553 34567777888888855544433
No 263
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.03 Score=64.05 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (595)
..+-+-.+++++-....++.....++.++...+++....|.++.|...+-++.+.. -+.+....|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 44444445554433222223445667777777777777888888877777776655 4667777888888888888888
Q ss_pred HHHHHHHhhC-CC----------C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHccCCCCHHHHHHHH
Q 007634 321 VFYELAFHFN-PH----------C------AEACNNLGVIYKDRDNL--DKAVECYQMALSIKPNFSQSLNNLG 375 (595)
Q Consensus 321 ~~~~~~l~~~-~~----------~------~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~la 375 (595)
..+++.++.+ |+ . ..+...++......+++ ..-+++|..+.+..|.....++.+|
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 8888887552 22 0 11223333333344432 3345667777777776666666565
No 264
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0095 Score=52.17 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=148.8
Q ss_pred chHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 47 EGKDALSYANILRS-RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 47 ~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+-+..+...++.+. ...-..|+++-..++..+|.+..+|...-.++..++ +..+-++++.++++.+|++..+|...-.
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ 120 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRV 120 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 44555555554444 456679999999999999999999888877776654 6788899999999999999999999999
Q ss_pred HHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 125 LYKDEGRLV-EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 125 ~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
+....|+.. .-+++.+.++..+.++-.++ ...-.+...-+.++.-+.+..+.++.+-.+-.+|...--+...
T Consensus 121 ive~l~d~s~rELef~~~~l~~DaKNYHaW-------shRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLDDDAKNYHAW-------SHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITN 193 (318)
T ss_pred HHHHhcCcccchHHHHHHHHhccccchhhh-------HHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEe
Confidence 999999888 88999999999888887764 4444455556789999999999999877766666543222222
Q ss_pred -cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q 007634 204 -LM-----QYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG--DLESAIACYERCL 252 (595)
Q Consensus 204 -~g-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~--~~~~A~~~~~~al 252 (595)
.| ..+.-+.+..+.+...|++..+|..|.-++.. .| ...+-........
T Consensus 194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 11 23455677888899999999999999888875 44 2334444444443
No 265
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.74 E-value=0.1 Score=56.32 Aligned_cols=114 Identities=19% Similarity=0.148 Sum_probs=88.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHh----C---CHHHHHHHHHHHHHcCCCcHHHHHH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTH 121 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 121 (595)
+..-.+++..+.|+.|+..|+++-...|.. .++.+..|..+..+ | .+++|+..|++. .-.|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence 344567888999999999999999998865 46888888887654 2 466777777764 345677778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~ 166 (595)
.|.+|.++|++++-++++.-+++..|+.+......-.+.+.+-.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES 602 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887655444444444333
No 266
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.73 E-value=4.5e-05 Score=68.86 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (595)
.-..|...+..|++++|++.|..+++++|.....+...+.+++.+++...|+..+..+++++|+...-+-..+.....+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 33467778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 007634 131 RLVEAAESYHKALSADPS 148 (595)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~ 148 (595)
++++|...+..+.+++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999887654
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=0.0037 Score=52.27 Aligned_cols=118 Identities=24% Similarity=0.137 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 318 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 318 ~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
+.....++....++... .+...++..+...|++++|+..++.++....+. .-+-.++|.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444455555554442 344677888999999999999999998764433 346678999999999999999988
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.......= .+..-...|.++...|+.++|+..|+++++..++..
T Consensus 150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 76532210 133456789999999999999999999999985543
No 268
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00055 Score=61.71 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=91.9
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 231 (595)
.|.-+..-|+-++...+|..|...|.+.++..-. +...|.+.+.+....|+|..|+.-..+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4556888899999999999999999999988443 467789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 232 GVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
+.++..+.++.+|..+++..+.++..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.68 E-value=9.8e-05 Score=43.34 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 270
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.66 E-value=0.058 Score=51.42 Aligned_cols=339 Identities=12% Similarity=-0.008 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc--------------
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-------------- 115 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------- 115 (595)
.+..+-...+-.++.+.-...+-..-+..|..+...+..|...++.+.+.+|++.+......-.+.
T Consensus 47 vl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 47 VLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 333344444556667776666666667788888899999999999999999999988776542111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHH-----
Q 007634 116 -ACAHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKY----- 180 (595)
Q Consensus 116 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~----- 180 (595)
...-...+.++...|++.++...+++.+..--. +.+.+.... ..+|..|.. ....+-+..+|
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v---lmlsrSYfLEl~e~~s~dl~pdyYemilf 203 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV---LMLSRSYFLELKESMSSDLYPDYYEMILF 203 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH---HHHhHHHHHHHHHhcccccChHHHHHHHH
Confidence 112244678899999999999999988764221 222222111 112222211 01111111111
Q ss_pred --HHHHh------------------------hCCCC-----HHHHHHHHHHHH--------------HcCCHHHHHHHHH
Q 007634 181 --YEALK------------------------IDPHY-----APAYYNLGVVYS--------------ELMQYDTALGCYE 215 (595)
Q Consensus 181 --~~~l~------------------------~~~~~-----~~~~~~la~~~~--------------~~g~~~~A~~~~~ 215 (595)
.++-. .-|.. ..++.+..+.|. -..+.+++....+
T Consensus 204 Y~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce 283 (549)
T PF07079_consen 204 YLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCE 283 (549)
T ss_pred HHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHH
Confidence 11100 01110 011111111000 0012222222222
Q ss_pred HHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-----------------------------
Q 007634 216 KAALE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA----------------------------- 261 (595)
Q Consensus 216 ~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------------------------- 261 (595)
..... ...-....-.+-....+.++...|..++.-...++|+....
T Consensus 284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~ 363 (549)
T PF07079_consen 284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN 363 (549)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH
Confidence 21111 00111122222233345677777777777666666654211
Q ss_pred -----------HhhHHHHHHHhhhhhhhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHH
Q 007634 262 -----------KNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAF 327 (595)
Q Consensus 262 -----------~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~~l 327 (595)
...++..+...+.-+-..|. -++|+..++.+++..+.+.+.....- .+-...|.+|+. .+.+.+
T Consensus 364 lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 364 LWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHH
Confidence 11112222223333444454 78889999988888887764332211 111112233221 222222
Q ss_pred hh---------CC---CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007634 328 HF---------NP---HCAEACNNL--GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (595)
Q Consensus 328 ~~---------~~---~~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (595)
.+ .| .+.+.-+.+ |..++.+|+|.++.-+-.=..++.| .+.++..+|.++....+|++|..++..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 21 12 234444444 4456789999999998888889999 899999999999999999999999876
Q ss_pred H
Q 007634 394 A 394 (595)
Q Consensus 394 a 394 (595)
.
T Consensus 521 L 521 (549)
T PF07079_consen 521 L 521 (549)
T ss_pred C
Confidence 4
No 271
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.64 E-value=0.11 Score=54.03 Aligned_cols=304 Identities=15% Similarity=0.035 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
.+.+..-+..+...|...+|+...-.+ .+|.-. ......+.-....++.. .+...++.-|... ........
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~--l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAEL--LASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHH--HhhCchHH
Confidence 566777777778888888888776543 222211 12222333344444432 2233333333211 11112223
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 226 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~ 226 (595)
...+.......++.+|..++.++...-+. .....-..|.+....|++++|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 44556667788999999888887665332 13455567888889999999999999999887753 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH--HHHHHHHHH----HhhCCCCH
Q 007634 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKA----LYYNWHYA 300 (595)
Q Consensus 227 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~----~~~~~~~~ 300 (595)
+...+|.+..-.|++++|..+...+.+...... .+.....+....+.+...+|+.. +....+... +...|-..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHD-VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 678889999999999999999999887754433 22233344455566666677332 222222222 12233333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----H
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--AE-ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----S 368 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~--~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~ 368 (595)
-.....+.++...-+++.+.....+.++. .|.. .. .++.++.+....|++++|...+.+...+-.+. .
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 33333333333333366666666666554 2322 22 23488999999999999999988877653222 1
Q ss_pred H--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 369 Q--SLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 369 ~--~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
. +..-.......+|+.++|.....+.
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1 1122223345678999998888774
No 272
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.64 E-value=0.00015 Score=42.60 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
.+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 273
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.63 E-value=0.064 Score=51.01 Aligned_cols=380 Identities=11% Similarity=-0.005 Sum_probs=196.9
Q ss_pred cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
..+.++-.++.+.+.+-.+|.+++-.+.|++...-.|--+.+|...-..-+..+++..-..+|.+++...-+ .+.|...
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lY 115 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLY 115 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHH
Confidence 345677889999999999999999999999998888877777777666666678888888888888865433 3333322
Q ss_pred HHHHHHcC---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 007634 123 GILYKDEG---------RLVEAAESYHKALSADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (595)
Q Consensus 123 a~~~~~~g---------~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~---l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (595)
-..-.+.+ ..-+|.+..-.+.-..|.....|......+.. ++. ...+.+.+.-...|.+++...-++
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k-wEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK-WEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHcCcccc
Confidence 22111111 12334444334444566665554443332211 111 113334455555566665542222
Q ss_pred HH-HHHHH---------HHHHHHcC----CHHHHHHH-------------------------------------------
Q 007634 191 AP-AYYNL---------GVVYSELM----QYDTALGC------------------------------------------- 213 (595)
Q Consensus 191 ~~-~~~~l---------a~~~~~~g----~~~~A~~~------------------------------------------- 213 (595)
.+ .|... +..-.-.| -|-.|...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 11 11000 00000000 01222222
Q ss_pred ----------------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 214 ----------------YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 214 ----------------~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
+++++...+-.++.|+.....+...++-+.|+...++++...|. ....+ +..+.
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~l-------se~ye 344 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFL-------SEYYE 344 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeH-------HHHHh
Confidence 23333334444566666666677778888888888888777776 22222 23333
Q ss_pred hcCCHHHHHHHHHHHHhh------------------CCC-CHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYY------------------NWH-YAD-----------AMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~------------------~~~-~~~-----------~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
...+-+....+|+++.+. +++ ..+ ++..+-..-.+..-.+.|...|.++-
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 334444444444433321 010 011 11112222223333455555555554
Q ss_pred hhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--HHH
Q 007634 328 HFNPHCAEACNNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEA 404 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~ 404 (595)
+..-....++..-|.+ +...|++.-|-..|+-.+...|+.+......-..+...++-+.|...|++++..-... ..+
T Consensus 425 k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 4432222333222222 3445667777777777777777666666666666666677777777777665542222 334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
|..+-..-..-|+...+...-++..++.|.
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 444444444555555555555555555554
No 274
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.60 E-value=0.07 Score=50.74 Aligned_cols=359 Identities=9% Similarity=-0.055 Sum_probs=191.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
-++.-++.+|++...|+.+..-+..+|.+++-.+.+++...-.|--+.+|...-.--+..+++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 4455678899999999999999999999999999999999988888777776665556677888888889888875433
Q ss_pred HHHHHHHHHHHHHhHHHH---HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 007634 150 KPAAECLAIVLTDLGTSL---KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE---------LMQYDTALGCYEKA 217 (595)
Q Consensus 150 ~~~~~~~a~~~~~l~~~~---~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a 217 (595)
.+.|...-. |...-.-. ...-..-+|.+..-.+.-.+|.....|...+..+.. +.+.+.-...|.++
T Consensus 109 ldLW~lYl~-YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 109 LDLWMLYLE-YIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred HhHHHHHHH-HHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 232221111 10000000 001112334444334444577777777776665542 34455666777777
Q ss_pred HHhCCCCHH-HHHH---------HHHHHHH----cCCHHHHHHHHHHHHhc-------CCCcHH-----------HHhh-
Q 007634 218 ALERPMYAE-AYCN---------MGVIYKN----RGDLESAIACYERCLAV-------SPNFEI-----------AKNN- 264 (595)
Q Consensus 218 l~~~~~~~~-~~~~---------la~~~~~----~~~~~~A~~~~~~al~~-------~~~~~~-----------~~~~- 264 (595)
+...-++.+ .|.. .+..-.- .--|..|...+++...+ +|-+.. .|.+
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 754322211 1111 1111000 11233344444443322 110000 0000
Q ss_pred ---------------------------------HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 265 ---------------------------------MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (595)
Q Consensus 265 ---------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 311 (595)
-..+++.-.......++-+.|+...+++....|. ....++.++.
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~ye 344 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYE 344 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHh
Confidence 0011111112222344555566555555554444 4555566665
Q ss_pred hcCCHHHHHHHHHHHHhh------------------CCC-CHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 312 EMLKFDMAIVFYELAFHF------------------NPH-CAEA-----------CNNLGVIYKDRDNLDKAVECYQMAL 361 (595)
Q Consensus 312 ~~~~~~~A~~~~~~~l~~------------------~~~-~~~~-----------~~~la~~~~~~~~~~~A~~~~~~al 361 (595)
..++-+.-..+|+++.+. ++. ..+. ++.+-..-.+..-.+.|...|-++-
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 555555555555444331 110 0111 1111122223334555666666655
Q ss_pred ccCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 362 SIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 362 ~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
+..-....++..-|.+ +...|++.-|-..|+-.+...|+++......-..+...++-..|...|+++++.-.
T Consensus 425 k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 5432223333333322 45677888888888888888888776666666677778888888888887765433
No 275
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.0029 Score=52.59 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666788888999999999999999999999999999999999999999999999988754
No 276
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.57 E-value=0.0029 Score=52.59 Aligned_cols=95 Identities=20% Similarity=0.120 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFSE 107 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (595)
.++..|......++.+.++..+++++...... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44556777788999999999999999864221 13455677778889999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (595)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 144 (595)
++..+|-+..++..+..++...|+..+|+..|++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 277
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.093 Score=50.75 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
+.+.|........+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|...
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 555566666655566666666777777777777777777666666665554 6666677777777777766655443
No 278
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.50 E-value=0.00012 Score=66.18 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=52.6
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (595)
+..|.+++|++.+..++.++|.....+...+.++.++++...|+..|..+++++|+...-+-..+.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666555555555555566666666666
Q ss_pred HHHHHHhC
Q 007634 391 IEKAIAAN 398 (595)
Q Consensus 391 ~~~al~~~ 398 (595)
+..+.+++
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 66665554
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.49 E-value=0.0002 Score=41.98 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+++.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46677777777777777777777777777774
No 280
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.47 E-value=0.059 Score=50.93 Aligned_cols=128 Identities=27% Similarity=0.317 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------C
Q 007634 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------N 349 (595)
Q Consensus 282 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~-------~ 349 (595)
..+|...|+.+. ....+.+.+.+|.++.. ..+..+|..+|+++.+..... ..+...++.++..-. +
T Consensus 93 ~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 444555544222 23344455555555554 336666666666666554333 234556666655431 2
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (595)
...|...|.++-... ++.+...+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 346777787776664 67778888877754 3378888888888888766 77788888 666555
No 281
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.42 E-value=0.018 Score=54.85 Aligned_cols=114 Identities=11% Similarity=-0.039 Sum_probs=85.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNM------------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (595)
Q Consensus 69 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (595)
.-|++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999998876654432 456788999999999999999998888888888999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
.-+++++..+|++...|..+-... ......-.+......|.+++..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~----q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFR----QSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHH----HHHhccCcHHHHHHHHHHHHHH
Confidence 999999999999887755432211 1112233566667777666653
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.049 Score=45.78 Aligned_cols=120 Identities=22% Similarity=0.136 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 007634 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 134 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A 210 (595)
+.....++....++...-+ ......++..+...+++++|+..++.++....+. ..+-.+++.+...+|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya----~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYA----VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHH----HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444455555555444332 2235567788888899999999999888754442 45667899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
+..+...... .-.+......|.++...|+.++|+..|++++...++.
T Consensus 146 L~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9988764322 1123445678999999999999999999999887544
No 283
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.42 E-value=0.022 Score=54.21 Aligned_cols=136 Identities=11% Similarity=0.090 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 007634 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACY 248 (595)
Q Consensus 172 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~ 248 (595)
-.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++...|...-..... .-.++.....|
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 346678899999999999999999999999999999999999999999999998888766554443 34577888888
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
.+++..-....... ..........+.. ...++..+.......|-.+.|+..++..++
T Consensus 126 ~~~l~~L~~~~~~~-----------------~~~~~~~~~~e~~------~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 126 EKCLRALSRRRSGR-----------------MTSHPDLPELEEF------MLYVFLRLCRFLRQAGYTERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHhhccc-----------------cccccchhhHHHH------HHHHHHHHHHHHHHCCchHHHHHHHHHHHH
Confidence 88876432211000 0000000000100 134566677777888888888888888888
Q ss_pred hC
Q 007634 329 FN 330 (595)
Q Consensus 329 ~~ 330 (595)
.+
T Consensus 183 ~n 184 (321)
T PF08424_consen 183 FN 184 (321)
T ss_pred HH
Confidence 74
No 284
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.40 E-value=0.12 Score=48.89 Aligned_cols=187 Identities=22% Similarity=0.217 Sum_probs=135.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ----NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD--- 128 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 128 (595)
......+++..|...+.++-.. .++.....++.++... .+..+|...|+.+ ....++.+.+.+|.+|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCC
Confidence 3445678899999999988662 3347778888887654 3678899999944 455678899999999987
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-------CChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 129 -EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-------GNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (595)
Q Consensus 129 -~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~-------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (595)
..+..+|..+|+++........ +.....+|.++..- .+...|...|.++-... ++.+...+|.+
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~ 196 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEA------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRM 196 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhH------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHH
Confidence 4599999999999998754432 11133333333332 13347888888887765 78899999988
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCC
Q 007634 201 YSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---------------DLESAIACYERCLAVSPN 257 (595)
Q Consensus 201 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---------------~~~~A~~~~~~al~~~~~ 257 (595)
|.. ..++.+|..+|.++.+... ....+.++ ++...| +...|...+..+....+.
T Consensus 197 y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 197 YEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 865 4589999999999998876 88888888 666655 666666666666555443
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.38 E-value=0.18 Score=50.12 Aligned_cols=384 Identities=11% Similarity=-0.028 Sum_probs=235.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGIL 125 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 125 (595)
-|-..|..-.+.|..+.+...|++.+.--|.+...|..+-... -..|+.+.-...|++|......+ ...|-..-..
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 3445677778899999999999999999998888877654444 34567777888888888865543 3455555555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH--HHHhCChHHHHHHHHHHHhh--CCCC---HHHHH-HH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKI--DPHY---APAYY-NL 197 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~A~~~~~~~l~~--~~~~---~~~~~-~l 197 (595)
-..++++..-...|++.++.--.....++. -+...... ....-..+++.+.-...... .+.. .+.+- ..
T Consensus 161 en~qks~k~v~~iyeRileiP~~~~~~~f~---~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v 237 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEIPLHQLNRHFD---RFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGV 237 (577)
T ss_pred HhccccHHHHHHHHHHHHhhhhhHhHHHHH---HHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHH
Confidence 677888999999999998752221111000 00000000 00011112221111111100 0000 00000 00
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHhhHHHHHHHh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDL 272 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~l 272 (595)
-.+-...+.++++.....+.+ ...=.++.......+.+..++..++. .|-+..-. ..+...
T Consensus 238 ~~~~~~s~~l~~~~~~l~~~~----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql----~nw~~y 303 (577)
T KOG1258|consen 238 KDSTDPSKSLTEEKTILKRIV----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL----KNWRYY 303 (577)
T ss_pred hhccCccchhhHHHHHHHHHH----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH----HHHHHH
Confidence 000000111122222111111 11112333444555556666666543 22222111 122223
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVIYKDRDNLD 351 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~ 351 (595)
-......|+++...-.|++++--.....+.|...+......|+.+-|...+.++.++ .|..+.+...-+.+-...|++.
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~ 383 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD 383 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH
Confidence 334456789999999999999888888999999999999999999999999998887 4677888888888999999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHhCCCc---HHHHHHHHHH-HHHcCCHHHHHHH
Q 007634 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVL-YRDAGSISLAIDA 424 (595)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~la~~-~~~~g~~~~A~~~ 424 (595)
.|...+++..+..|+...+-.........+|+.+.+.. .+.....-..+. ...+...+.. +.-.++.+.|...
T Consensus 384 ~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~ 463 (577)
T KOG1258|consen 384 DAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARII 463 (577)
T ss_pred HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999889988888888888889999998884 333332221111 2334444443 3446889999999
Q ss_pred HHHHHhcCCCChhhhhhHHHHhhhcc
Q 007634 425 YEQCLKIDPDSRNAGQNRLLAMNYIN 450 (595)
Q Consensus 425 ~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (595)
+.++++..|++...+...+....+..
T Consensus 464 l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 464 LLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 99999999999877666544333333
No 286
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.20 E-value=0.0013 Score=58.64 Aligned_cols=77 Identities=25% Similarity=0.197 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+...+..|......|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33445566666777777777777777777777777777777777777777777777777777777777776665543
No 287
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.18 Score=49.46 Aligned_cols=298 Identities=11% Similarity=-0.012 Sum_probs=166.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~la~~~ 201 (595)
.+.-..|.-+++...+.++-...+-....-......++..-..+...+.. +...+.+.......|..+......+..+
T Consensus 198 ~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l 277 (546)
T KOG3783|consen 198 SVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARIL 277 (546)
T ss_pred HHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHH
Confidence 33444566666766666655443222222111112222222333333333 4455555566677899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH-HHHHHhhh-hhh
Q 007634 202 SELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGT-KVK 277 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~l~~-~~~ 277 (595)
...|+.+.|+..++..++..-. ..-.++.+|.++.-+.+|..|...+....+...-....+..++ -++..-.. +..
T Consensus 278 ~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~ 357 (546)
T KOG3783|consen 278 SIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQG 357 (546)
T ss_pred HHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHh
Confidence 9999988888888887761111 2346778888888999999999999988877654443333333 22211111 111
Q ss_pred hcCCHHHHHHHHHHHH---hhCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHcC-
Q 007634 278 LEGDINQGVAYYKKAL---YYNWHYAD---AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE--ACNNLGVIYKDRD- 348 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~---~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~la~~~~~~~- 348 (595)
..++-++|..+++... ...|++.. .....+.-+...+. .++..+. .+..++.++..-.
T Consensus 358 ~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------------~~~~~~la~P~~El~Y~Wngf~~ 424 (546)
T KOG3783|consen 358 AGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------------LNASILLASPYYELAYFWNGFSR 424 (546)
T ss_pred cccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------ccccccccchHHHHHHHHhhccc
Confidence 2335555544444332 22222111 11111111111110 1111111 2234444433221
Q ss_pred -CHHHHHHHHHHHHc---c-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CC----cHHHHHHHHHHHHHc
Q 007634 349 -NLDKAVECYQMALS---I-KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---PT----YAEAYNNLGVLYRDA 415 (595)
Q Consensus 349 -~~~~A~~~~~~al~---~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~ 415 (595)
..++.. -++..++ . ++++ .--+..+|.++..+|+...|..+|...++.. .+ .|-+++.+|.++..+
T Consensus 425 ~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~ 503 (546)
T KOG3783|consen 425 MSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDL 503 (546)
T ss_pred CChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc
Confidence 222222 1111111 1 2222 2245678999999999999999999888541 11 267999999999999
Q ss_pred CC-HHHHHHHHHHHHhcCCCC
Q 007634 416 GS-ISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 416 g~-~~~A~~~~~~al~~~p~~ 435 (595)
|. ..++..++.+|-+...++
T Consensus 504 ~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 504 GGGLKEARALLLKAREYASDY 524 (546)
T ss_pred ccChHHHHHHHHHHHhhcccc
Confidence 99 999999999999887654
No 288
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.17 E-value=0.0039 Score=46.99 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=75.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHcCCCcHHHH
Q 007634 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (595)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (595)
+|..++.+|++-+|+++.+..+...+++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888765 556677777765542 2358899999999999998889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
+.+|.-+-....|+++..-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 98888877777888888888888765
No 289
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.15 E-value=0.031 Score=53.76 Aligned_cols=75 Identities=20% Similarity=0.099 Sum_probs=54.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------------CC------------Cc---HHHHHHHHH
Q 007634 74 VLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DP------------QN---ACAHTHCGI 124 (595)
Q Consensus 74 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~la~ 124 (595)
.+..+|.+.+.+..++.++..+|+.+.|.+.+++++-. ++ .| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35678999999999999999999999999998888632 11 11 123444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 125 LYKDEGRLVEAAESYHKALSADPS 148 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~ 148 (595)
.+.+.|-+..|.++.+-.+.++|.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCC
Confidence 666677777777777777777776
No 290
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.14 Score=50.15 Aligned_cols=95 Identities=6% Similarity=-0.079 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHH
Q 007634 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (595)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~ 178 (595)
+...+.+.......|+++...+..+..+...|+.+.|+..++..++ ..........++.+|.++.-+.+|..|-.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666677888888888888888888888888888887776 23333345557778888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 007634 179 KYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~la 198 (595)
.+....+.+.-..-.|..++
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHH
Confidence 88888776655444444444
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.11 E-value=0.00048 Score=40.88 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
+.+||.+|..+|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556667777777777777777774443
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.08 E-value=0.0011 Score=38.76 Aligned_cols=30 Identities=40% Similarity=0.639 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (595)
+++.+|.++..+|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555554
No 293
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.08 E-value=0.036 Score=53.38 Aligned_cols=144 Identities=17% Similarity=0.046 Sum_probs=107.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHH
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGV 342 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------------~------------~~~---~~~~~~la~ 342 (595)
.+..+|-+.+++..++.++..+|+.+.|.+.+++++-. + +.| -.+.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34668999999999999999999999999988888642 1 112 234566677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHc
Q 007634 343 IYKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDA 415 (595)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~ 415 (595)
.+.+.|-+..|.++.+-.+.++|. ++- ++..+-....+.++++--+..++....... .-|...+..+.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 788899999999999999999998 654 444444555667788777777776554211 1235677888888888
Q ss_pred CCH---------------HHHHHHHHHHHhcCCCC
Q 007634 416 GSI---------------SLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 416 g~~---------------~~A~~~~~~al~~~p~~ 435 (595)
++. ++|...+.+|+...|.-
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 888 89999999999888853
No 294
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.07 E-value=0.49 Score=48.99 Aligned_cols=369 Identities=13% Similarity=-0.005 Sum_probs=214.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---HcCCHHHHHH
Q 007634 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAE 137 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~ 137 (595)
.+.-+.=+.-++.-+..++.+...+..|-.++...|++++-...-.++.++.|..+..|.....-.. ..+.-.++..
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~ 171 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEE 171 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHH
Confidence 3444555666777777888888999999999999999998888888888888888888776654332 2367778888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHH
Q 007634 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~g~~~~A 210 (595)
.|++++.- -.....|...+......+..+...++++.....|.+++..-.. ....+...-..|...-..++-
T Consensus 172 ~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 172 LFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99998864 3445566666666666667777778899999999998875322 234555566666666666777
Q ss_pred HHHHHHHHHhCCCCHH----HHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 211 LGCYEKAALERPMYAE----AYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~----~~~~la---~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
+.++...+... -+.+ .+.... .......+++.|..-+.+.+.............-..+...-+.....|+..
T Consensus 251 ~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ 329 (881)
T KOG0128|consen 251 IALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPV 329 (881)
T ss_pred HHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Confidence 77777776654 2211 112111 112234556666655554443333322222222233444444455567777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCHHH--------------------------
Q 007634 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFHFNPHCAEA-------------------------- 336 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~-------------------------- 336 (595)
.-...++++....+.+...|...+...-.. +-.+.+...+.+++...|-....
T Consensus 330 ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~l 409 (881)
T KOG0128|consen 330 RIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDL 409 (881)
T ss_pred HHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 777777777776666666666655443211 11111111111111111111000
Q ss_pred -----HHHHHHHHHH-c-------------CCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007634 337 -----CNNLGVIYKD-R-------------DNLDKAVECYQMALSI-KPNFSQSLNNLGVVYT-VQGKMDAAAEMIEKAI 395 (595)
Q Consensus 337 -----~~~la~~~~~-~-------------~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 395 (595)
+.+....+.. . ..+..|..+|...... -......+-..|.++. .+++.+.+....+..+
T Consensus 410 s~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~im 489 (881)
T KOG0128|consen 410 SMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIM 489 (881)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccc
Confidence 1111111111 1 1233344444433332 1112334444555543 3567788888877776
Q ss_pred HhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 396 AANPTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 396 ~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
........ .|.....+-...|+...+..++++|+..
T Consensus 490 ty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 490 TYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred cCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 66555444 7777888888889999999988888764
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.06 E-value=0.062 Score=44.01 Aligned_cols=100 Identities=12% Similarity=-0.045 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
-...++.........++.+++..++..+--..|..++.-..-|..+...|++.+|+..|+.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 35667888888899999999999999988899999999999999999999999999999999988999998888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC
Q 007634 127 KDEGRLVEAAESYHKALSADP 147 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~ 147 (595)
..+|+.+ =..+-..+++..+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCC
Confidence 8888753 2333344454443
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.43 Score=48.23 Aligned_cols=139 Identities=17% Similarity=0.058 Sum_probs=76.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH----------HHHHHHH
Q 007634 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH----------THCGILY 126 (595)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~ 126 (595)
.+...=..++|+++ ++.+| ++..|..+|......-.++-|...|-+.-.. |. .... ...+.+-
T Consensus 672 ~Lve~vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~ 744 (1189)
T KOG2041|consen 672 NLVEAVGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEIS 744 (1189)
T ss_pred HHHHHhchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHh
Confidence 34444456677766 34455 7899999999988888888888777654221 11 1111 2234444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSEL 204 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~ 204 (595)
.--|++++|.+.|-.+-. .+. + ...+...|+|-...+.++..-.-+. ....++.++|..+..+
T Consensus 745 ~~~g~feeaek~yld~dr---rDL------A------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADR---RDL------A------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM 809 (1189)
T ss_pred hhhcchhHhhhhhhccch---hhh------h------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH
Confidence 445788888877754321 110 0 1122334555555544433211111 1245666777777777
Q ss_pred CCHHHHHHHHHHH
Q 007634 205 MQYDTALGCYEKA 217 (595)
Q Consensus 205 g~~~~A~~~~~~a 217 (595)
..+++|.++|.+.
T Consensus 810 ~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777776654
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.02 E-value=0.0012 Score=38.19 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666665
No 298
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.97 E-value=0.0029 Score=56.48 Aligned_cols=64 Identities=28% Similarity=0.386 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
.+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.++..|+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 4456666666666666666666666666666666666666666666666666666666555544
No 299
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.94 E-value=0.0051 Score=58.49 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=100.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 312 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
..|+.-.|-.-+..++...|..+......+.+...+|.|+.+...+.-+-..-.....+...+-.....+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45667777777777777777777777777777777788877777766554443333444445555666778888888777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCC
Q 007634 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (595)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 453 (595)
.-.+...-+++++..--+-....+|-+++|.-++++.+.++|.....+.|.+-...|+..|+
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 77777666666666666666677777888888888888888877777777766667776665
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.83 E-value=0.0024 Score=36.92 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (595)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.82 E-value=0.12 Score=45.76 Aligned_cols=197 Identities=13% Similarity=-0.003 Sum_probs=120.9
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----CCcH-HHHHHHHHHHHHc
Q 007634 60 SRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----PQNA-CAHTHCGILYKDE 129 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~ 129 (595)
...+.++|+.-|+++++..+... .++-.+..+.+.+|++++-+..|.+.+..- .+.. .....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988754 467778889999999999999888876531 1111 1111111111122
Q ss_pred CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC------------CCHHHHH
Q 007634 130 GRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------HYAPAYY 195 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------------~~~~~~~ 195 (595)
.+.+--.++|+..+.. +..+...|+ ..-..+|.+++..+.|.+-...+.+.-.... .-.++|.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 3333333444433322 111111111 0123577777777888777776666543311 1234555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERPMY--AEAY----CNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 259 (595)
.-...|..+.+..+-...|++++.+...- |... -.=|..+.+.|++++|..-|-.+++-.....
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG 265 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG 265 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC
Confidence 66678888888888888999998775432 2222 1225667888999999998888887655443
No 302
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.42 Score=44.00 Aligned_cols=205 Identities=13% Similarity=0.047 Sum_probs=128.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CC--Cc
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVKL---DP--QN 115 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p--~~ 115 (595)
.+..++.....+++++++..|..++.. .|.+ ......+|..+...|+.++-.......-.. -+ ..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 377888888999999999999999884 2222 246778999999999988765555443221 11 11
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh----C--C
Q 007634 116 ACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----D--P 188 (595)
Q Consensus 116 ~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~--~ 188 (595)
......+-.... ..+..+.-+..+..+++......... ..-.+-..+...|...++|.+|+......+.. + +
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtF-LRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTF-LRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 122222222222 23344455556666655433222211 11222455777888999999999888776643 2 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----PM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (595)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 256 (595)
.-.+++..-..+|+...+..+|...+..+-... |. ....-..-|.++....+|.-|..+|-++++-..
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 235667777888899999999988887764432 11 122233346667777899999999999887643
No 303
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.77 E-value=0.022 Score=42.15 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHH
Q 007634 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--ACAHTHCGILYKDEGRLV 133 (595)
Q Consensus 67 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 133 (595)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3566778888899999999999999999999999999999999888764 445555555555555433
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.76 E-value=0.13 Score=45.58 Aligned_cols=213 Identities=15% Similarity=0.120 Sum_probs=128.8
Q ss_pred hCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhHH
Q 007634 95 QNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADP-----SYKPAAECLAIVLTDLGT 165 (595)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~~a~~~~~l~~ 165 (595)
..+.++|+..|++++++.+... .++..+..+++++|++++-...|.+.+..-. +..+-. ...+-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs------IN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS------INSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH------HHHHHH
Confidence 3478999999999999988754 4677888999999999999999988765311 111110 011111
Q ss_pred HHHHhCChHHHHHHHHHHHhh--CCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKI--DPHYAPA----YYNLGVVYSELMQYDTALGCYEKAALERPM------------YAEA 227 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~--~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~ 227 (595)
.-....+.+--.+.|+..+.. +..+... -..+|.+|+..+.|.+-.+.+.+.-..... -.++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 111222333333333333322 1222223 346899999999998888777776543221 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-----HH-
Q 007634 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----AD- 301 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~- 301 (595)
+..-.++|..+.+..+-...|++++.+...-+... .++.+-.--|......|++++|..-|-++.+...+. ..
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC 272 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 272 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence 55566778888888888888998887754433221 234444444566777888888888777777654322 11
Q ss_pred -HHHHHHHHHHhcC
Q 007634 302 -AMYNLGVAYGEML 314 (595)
Q Consensus 302 -~~~~la~~~~~~~ 314 (595)
-+..+|..+.+.|
T Consensus 273 LKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 273 LKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHcC
Confidence 2444555555544
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.32 Score=49.15 Aligned_cols=253 Identities=13% Similarity=0.037 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHhHHHHHHhCChH
Q 007634 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL---TDLGTSLKLAGNTQ 174 (595)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~---~~l~~~~~~~~~~~ 174 (595)
.++|+++. +.+| +++.|..+|......-.++-|...|-++-.. +.- .....+..++ ...+.+-..-|+++
T Consensus 679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 34454443 3344 6889999999988888888888888766332 110 0001111111 22334444558999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
+|.+.|-.+-..+ .-..++.+.|+|-...++++..-.-.. .-..++.++|..+..+..|++|.++|...-
T Consensus 752 eaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998886542221 123456677787777666654321111 135689999999999999999999998764
Q ss_pred hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 007634 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 332 (595)
... +...+++.+ ..+++- +.....-|++...+-.+|..+...|.-++|.+.|-+.- .|.
T Consensus 824 ~~e--------~~~ecly~l-------e~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk 882 (1189)
T KOG2041|consen 824 DTE--------NQIECLYRL-------ELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK 882 (1189)
T ss_pred chH--------hHHHHHHHH-------HhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH
Confidence 321 223344432 344432 33344457778888888998888888888888775431 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
+ --.....++++.+|.+.-++- + -|.-.......+.-+...++.-+|++..+++
T Consensus 883 ---a---Av~tCv~LnQW~~avelaq~~-~-l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 ---A---AVHTCVELNQWGEAVELAQRF-Q-LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 112233445555665544432 1 1222222333333344455555555555544
No 306
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.63 E-value=0.0057 Score=39.59 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+.++.+|..+.++|++++|..+.+.++++.|++..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3456677777777777777777777777777776554
No 307
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.62 E-value=0.022 Score=43.06 Aligned_cols=28 Identities=11% Similarity=-0.153 Sum_probs=15.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHFNPHCA 334 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~~~~~~ 334 (595)
+.-++..|++-+|++..+..+...+++.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 3445555666666666666665554443
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.59 E-value=0.77 Score=44.37 Aligned_cols=135 Identities=11% Similarity=0.008 Sum_probs=90.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++....-.......|+...|-+-+..++...|..+......+.+...+|+|+.+...+..+-..-.....+...+-...
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 44555555566788999999999999999999999999999999999999999999888766554444444444555556
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (595)
...|++++|.....-.+.-.-++++. ....+......|-++++..++++.+.++|
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 66677777776666665543333332 11122222334555666666666665544
No 309
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.54 E-value=0.0054 Score=36.29 Aligned_cols=28 Identities=46% Similarity=0.693 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
++.+||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667888888888888888888885543
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.53 E-value=0.059 Score=44.14 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
.+..+..+-...++.+++...+...--+.|..++.-..-|+++...|++.+|+..++.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444555556667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 007634 416 GSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 416 g~~~~A~~~~~~al~~~p 433 (595)
|+.+ =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 7753 2223334444443
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.52 E-value=0.2 Score=40.33 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..|+...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34566677777778999999999988888899999999999999999999999999999988888888888888888888
Q ss_pred HcCCHH
Q 007634 128 DEGRLV 133 (595)
Q Consensus 128 ~~g~~~ 133 (595)
.+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888743
No 312
>PRK10941 hypothetical protein; Provisional
Probab=96.51 E-value=0.049 Score=49.71 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
.++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3444455555555555555555555555555555555555555555555555555555555555543
No 313
>PRK10941 hypothetical protein; Provisional
Probab=96.50 E-value=0.02 Score=52.23 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4455666666777777777777777777777776666777777777777777777777777777766553
No 314
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.15 Score=50.51 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=107.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 313 MLKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (595)
Q Consensus 313 ~~~~~~A~~~~~~~l~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (595)
.+....++..+...+.+++.+++.+.. +...+...+....+......++..+|++..+..+++......|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344444677777777788888877544 477777788888999999999999999999999999998888877776666
Q ss_pred HHH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 007634 391 IEK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (595)
Q Consensus 391 ~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (595)
+.. +....|++.+....+ +.....+|+..++.....++..+.|.++......+.+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 655 788888887766555 9999999999999999999999999998777766555
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.41 E-value=0.019 Score=37.25 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (595)
++.+|..+++.|+|++|..+.+.+++.+|++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 344444444444444444444444444444443
No 316
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.84 Score=42.10 Aligned_cols=208 Identities=17% Similarity=0.096 Sum_probs=124.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc--CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 86 IGKGICLQMQNMGRLAFDSFSEAVKL--DPQN--------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
...+......++.++++..+...+.. .|.+ ......+|..+.+.|+..+-.......-........+.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak-- 85 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK-- 85 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH--
Confidence 45556666677788999999988874 2221 23678899999999998876665554432211111110
Q ss_pred HHHHHHHhHH-HHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--C
Q 007634 156 LAIVLTDLGT-SLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE----R--P 222 (595)
Q Consensus 156 ~a~~~~~l~~-~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--~ 222 (595)
.+.+...+-. +....+....-+..+..+++..... ...-..+..+|...++|.+|+......+.. + +
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 0111111111 1222344445555555555542221 223346788999999999999988877643 1 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 007634 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 223 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (595)
.-.+++..-..+|+...+..+|...+..+-.....-.......+.+-..-|..+....+|..|..+|-++++-
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 2355667778888888999999888877654322211111123444455566666677888888888777754
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.34 E-value=0.05 Score=47.95 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH-------HHHHHHHHHhhCCC------CHHHHHH
Q 007634 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD-------GIQKYYEALKIDPH------YAPAYYN 196 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~-------A~~~~~~~l~~~~~------~~~~~~~ 196 (595)
..+++|++.|.-++-...-...-....|.++..++.++...|+.+. |++.|.++++.... ...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3555666666555432111011111356667777777777777444 44444444433211 2355566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 007634 197 LGVVYSELMQYDTALGCYEKAALER 221 (595)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~ 221 (595)
+|.+..+.|++++|..+|.+++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 6666666666666666666666543
No 318
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.28 E-value=0.051 Score=40.21 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhhhhhHHHHhhhccCCC
Q 007634 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS--RNAGQNRLLAMNYINEGH 453 (595)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~ 453 (595)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..++..++-.+..+..++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 556777888888888888888888888888888888888888888766 334444444444444443
No 319
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.28 E-value=1.9 Score=45.39 Aligned_cols=145 Identities=10% Similarity=-0.062 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
.+..+..|...++.|++..+..+..++ ..+|- ..+..........+.. ....+...++.+|+.+..-........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 467888899999999988887766653 33443 2233322222222221 122445556677777765544444333
Q ss_pred ---HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 128 ---DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 128 ---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
+.+++..-+.++ ...|.+... ....+......|+.++|.....++-......+.....+-..+.+.
T Consensus 108 ~La~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 108 ELARREDWRGLLAFS----PEKPKPVEA-------RCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHccCHHHHHHhc----CCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHc
Confidence 344444444322 123544443 233334455667777776666666555544455554444444444
Q ss_pred CCHH
Q 007634 205 MQYD 208 (595)
Q Consensus 205 g~~~ 208 (595)
|...
T Consensus 177 g~lt 180 (644)
T PRK11619 177 GKQD 180 (644)
T ss_pred CCCC
Confidence 4433
No 320
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.22 E-value=0.0096 Score=51.01 Aligned_cols=66 Identities=29% Similarity=0.504 Sum_probs=56.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.....-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh
Confidence 345567888899999999999999999999999999999999999999999999999988655433
No 321
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.14 E-value=0.12 Score=39.29 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=54.0
Q ss_pred HcCCHHHHHHHHHHHHccCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCcH----
Q 007634 346 DRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYA---- 402 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~---- 402 (595)
..|-|++|...++++++.... +.-++..|+..+..+|+|++++...++++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 445666666666666655221 123555667777777777776665555554 344433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
.+.++.+..+..+|+.++|+..|+.+-+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 35567888889999999999999888654
No 322
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.035 Score=53.74 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=91.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
..++..+..|.-.+..+.+..|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....+++.+
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~l 451 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHH
Confidence 45566666777777778899999999999999999999999999888765 466678899999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
+.++...+++.+|+.+...+....|.+.
T Consensus 452 a~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999998888888543
No 323
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=1 Score=40.50 Aligned_cols=216 Identities=13% Similarity=-0.012 Sum_probs=123.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
+++|+...+.+++++|+..|.+++...- +.......++..|...|++..--+..... .+++...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~f- 78 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDF- 78 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHh-
Confidence 7889999999999999999999987621 12346777888888888876543333221 1111111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
--.+..+..+..++..|..++.......++..+..... .+-...++. ..-..+..++++
T Consensus 79 -------tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~-----rEkr~fLr~---------~Le~Kli~l~y~ 137 (421)
T COG5159 79 -------TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWAD-----REKRKFLRL---------ELECKLIYLLYK 137 (421)
T ss_pred -------cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH-----HHHHHHHHH---------HHHHHHHHHHHh
Confidence 11223344555555555444332211111111100000 001111121 223457788889
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 204 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
.|+|.+|+......+.. .+.-...+..-..+|....+..++...+..+-.....-.......+..-..-|...+
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 99999999888776542 344566777778888888888888777766544322111111123444445566666
Q ss_pred hcCCHHHHHHHHHHHHhhC
Q 007634 278 LEGDINQGVAYYKKALYYN 296 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~ 296 (595)
...++..|-.+|-++++-.
T Consensus 218 dd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 218 DDRDYKTASSYFIEALEGF 236 (421)
T ss_pred ccccchhHHHHHHHHHhcc
Confidence 7778888888888877643
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.08 E-value=0.01 Score=33.81 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
++..+|.++..+|++++|..+++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666654
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=0.71 Score=38.17 Aligned_cols=147 Identities=18% Similarity=0.114 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--c--HHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--N--ACAHTH 121 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~ 121 (595)
....+..|..+.+.++.++|+..|..+-+..-.+ .-+.+..|.+....|+...|+..|..+-...|- - -.+...
T Consensus 58 sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 58 SGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3455677777888888999999998876654443 346677788888889999999999887665432 1 224455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 201 (595)
-+.++...|.|++-..-.+..-. +.++- ...+-..+|...++.|++.+|...|.+... +...+....+.+.+.
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~--d~n~m----R~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAG--DGNPM----RHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccC--CCChh----HHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 56677777877766555443321 11111 111234455556666777777777766555 333444444444443
No 326
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.98 E-value=0.34 Score=37.04 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=71.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------c
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSG------------NVEAHIGKGICLQMQNMGRLAFDSFSEAVK-------L 111 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 111 (595)
.+..|...+..|-|++|...++++++.... ++-++..++..+..+|+|++++....+++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 355677888899999999999999885321 234677889999999999998887777765 4
Q ss_pred CCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 112 DPQNAC----AHTHCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 112 ~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
+.+... +.+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 555433 4567788899999999999999988653
No 327
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.96 E-value=1.8 Score=42.36 Aligned_cols=105 Identities=9% Similarity=0.011 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
.++....-..+-..+.+.|-+.+|...|.+...+.|-....+..+..+-.. .-+...+..+|+.++.....+++.|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 345555556666777888889999999999888888777766666555332 234778889999999888888999988
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKI-DPD 434 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~-~p~ 434 (595)
.-..-..+|..+.+-..|.+|++. +|.
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHHhhChh
Confidence 888888999999999999998864 444
No 328
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.95 E-value=3.3 Score=45.24 Aligned_cols=135 Identities=14% Similarity=0.061 Sum_probs=90.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE---CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (595)
-.++...+.|+.|+..|+++-...|.-.+.+. ..+..+...+........+.+|+..|++.- -.|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 45677788999999999999999987655433 333333333332222235777888777643 35667788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCc
Q 007634 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~ 258 (595)
+|..+|++++-+++|.-+++..|+.|..-...-.+..++ .+-..|....--++...|..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999998765433332222221 12234555555555565653
No 329
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.88 E-value=0.81 Score=45.96 Aligned_cols=63 Identities=17% Similarity=0.043 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEK-------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (595)
.....+|-.+|+..+..=+++-|.+.|.++-.. ......--..+|..+.-.|++.+|.+.|.+
T Consensus 582 gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 582 GVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344567888888888888899998888776321 011112234567777777888888777765
No 330
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.75 E-value=0.11 Score=45.82 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 335 EACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
.+.+.+|.+..+.|++++|..+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45555566666666666666666665554
No 331
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.74 E-value=0.13 Score=40.37 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 367 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.....+++++++.... +..+.+.+++..++ -.|+. -+..+.|+..+.+.|+|++++.+.+..++..|++..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3567778888887665 45567888888886 44433 46788888888999999999999999999998887764
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.63 E-value=0.22 Score=40.03 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=53.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 007634 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (595)
..-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+-..-.++.|+..+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33344667777777776666667777777777777777777777777777777766666666666777777777765
No 333
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.62 E-value=0.19 Score=42.94 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
..++..+|..|.+.|+.++|++.|.++.+.... ..+.++.+..+....+++.....++.++-....... .+.....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~-d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG-DWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc-hHHHHHH
Confidence 356777888888888888888888887665433 245677777888888888888888887765533311 1222222
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
+-...|......++|.+|...|-.+.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22223333333455555555554443
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=1.1 Score=37.14 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=95.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--C--HHHHHHHHHHHHhcC
Q 007634 309 AYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F--SQSLNNLGVVYTVQG 382 (595)
Q Consensus 309 ~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~--~~~~~~la~~~~~~g 382 (595)
-+...++.++|+..|...-+..-.. ..+.+..+.+..+.|+...|+..|..+-...|. - ..+...-+.++...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 3456678888988888877664433 456677889999999999999999988765432 1 224455677788889
Q ss_pred CHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 383 KMDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 383 ~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
-|++-....+..- ..+|-...+...||..-.+.|++.+|.+.|.+... +...+....+
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirq 205 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQ 205 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHH
Confidence 9988776665542 22455567888899999999999999999999887 4333433333
No 335
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.58 E-value=2.8 Score=42.38 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=111.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------------CCCcHHHHHH
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DPQNACAHTH 121 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~ 121 (595)
..+...|.+++|...----+ . ..-|..+|...+..=+++-|.+.|.++-.+ ....| --..
T Consensus 564 ~q~Ieag~f~ea~~iaclgV--v---~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iL 637 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGV--T---DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLL 637 (1081)
T ss_pred hhhhhccchhhhhcccccce--e---cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHH
Confidence 35677888887765421111 1 123555666666666677777777655322 11112 2234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhHHHHHHhCChHHHHHHHHHHHhh--CCCCHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI-VLTDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLG 198 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~-~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la 198 (595)
+|..+.-.|++.+|.+.|.+.-.. ..+...... -.+..+.-+...|.-++-....++-.+- +-+.+. .-+
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~e----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAA 710 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHE----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAA 710 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCch----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHH
Confidence 677777788888888888754211 111110000 0233344444444444443333332111 111222 134
Q ss_pred HHHHHcCCHHHHHHHHH------HH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH
Q 007634 199 VVYSELMQYDTALGCYE------KA----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~------~a----l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 268 (595)
..+...|+.++|+...- -+ -+++....+.+..++..+.....+.-|.+.|.+.-..
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------------- 776 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------------- 776 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------------
Confidence 55566666666665431 11 1222233344444444455555555555554443111
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
..+-......+++.+|..+.++.-+.- +++++-.|..+....++++|.+.|-++
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 011122223456666655544432221 235555566666666666665555443
No 336
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.57 E-value=0.13 Score=55.91 Aligned_cols=163 Identities=20% Similarity=0.184 Sum_probs=126.5
Q ss_pred HHHhhhhhhhcCCHHHHHH------HHH-HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC
Q 007634 269 LTDLGTKVKLEGDINQGVA------YYK-KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHC 333 (595)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~------~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~~ 333 (595)
....|......+.+.++.+ .+. ....++|.....+..++.++...+++++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3444444555666776666 554 233457888899999999999999999999988877654 3556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------ 399 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------ 399 (595)
...+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.|+..+.
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 778889999999999999999999888765 355556778899999999999999999999998632
Q ss_pred --CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 400 --TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 400 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
.....+..++.++..++++..|....+....+
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 22456777888888888888888887777654
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.54 E-value=0.3 Score=41.72 Aligned_cols=103 Identities=11% Similarity=-0.110 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~ 159 (595)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+..+....+++.....+..++-..... ...+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 57889999999999999999999998776543 2457788888888999999999998888765333 1113333334
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
-...|..+...++|.+|.+.|-.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 444555666667777777777665443
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.51 E-value=0.026 Score=31.95 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (595)
+..+|.++...|++++|+..++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444443
No 339
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.49 E-value=0.42 Score=37.63 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 334 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 334 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
.+..+++++++.... +..+.+.+++..++ -.|+. -+..+.|+..+.+.++|++++.+.+..++..|++.++...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 455666666666544 44566777777775 33332 4566777777778888888888888888877777665543
No 340
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.48 E-value=0.027 Score=48.35 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=36.7
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34455666666666666666666666666666666666666666666666666666543
No 341
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.46 E-value=4.1 Score=42.91 Aligned_cols=339 Identities=9% Similarity=-0.091 Sum_probs=154.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 70 LYEIVLEKDSGNVEAHIGKGICLQM---QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (595)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 146 (595)
-+...++.+|+.+..-......... .+++..-+.+ ....|.+....+..+......|+.++|....+++....
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~----~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF----SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh----cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4445566778777655544444433 4455544442 22357888888888888999999988888888876655
Q ss_pred CCCHHHHHHHHHHHH-----------HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 007634 147 PSYKPAAECLAIVLT-----------DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCY 214 (595)
Q Consensus 147 ~~~~~~~~~~a~~~~-----------~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~ 214 (595)
...+.....+-..+. .........|+...|......+ .++ ... ++..... ..+...+...+
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l---~~~-~~~---~a~a~~al~~~p~~~~~~~ 232 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL---PAD-YQT---IASALIKLQNDPNTVETFA 232 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc---Chh-HHH---HHHHHHHHHHCHHHHHHHh
Confidence 443333222211111 1122223334444333322211 010 000 1111100 01111111111
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 215 EKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 215 ~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
.. ..|.. ......++..-....+.+.|...+.+......-....... +...++......+...+|...+..+.
T Consensus 233 ~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~---~~~~lA~~~a~~~~~~~a~~w~~~~~ 306 (644)
T PRK11619 233 RT---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQE---LRDIVAWRLMGNDVTDEQAKWRDDVI 306 (644)
T ss_pred hc---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 10 00111 0111222222334445556666655543333222211111 11111111111111334444444332
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---------
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------- 364 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------- 364 (595)
.... +.+.......+....++++.+...+...-..........+-+|..+...|+.++|...|+++....
T Consensus 307 ~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~ 385 (644)
T PRK11619 307 MRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQ 385 (644)
T ss_pred cccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 2211 122222222233355555555444444333233344555555555555566666655555543210
Q ss_pred -------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 365 -------------PN-----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 365 -------------~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
|. ........+..+...|+...|...+..++.. .+..-...++.+....|.++.++....
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 00 0012344566677788888888888777764 235566777888888888888877665
Q ss_pred HH
Q 007634 427 QC 428 (595)
Q Consensus 427 ~a 428 (595)
++
T Consensus 464 ~~ 465 (644)
T PRK11619 464 AG 465 (644)
T ss_pred hc
Confidence 43
No 342
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.24 E-value=0.27 Score=53.59 Aligned_cols=137 Identities=16% Similarity=0.068 Sum_probs=96.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHH------HHHHH-HHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Q 007634 46 FEGKDALSYANILRSRNKFVDALA------LYEIV-LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (595)
...+..++.+......|.+.+|.+ ++... -...|.....+..++..+...|++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 567788899999999999998888 55533 2357888899999999999999999999998877654
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 007634 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (595)
Q Consensus 112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (595)
.|+....+..++...+..++...|...+.++..+ .|..+.. +.+..+++.++...++++.|+.+.+.++.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2445667788888888888888888887777653 2222221 22234444444555566666666666655
Q ss_pred h
Q 007634 186 I 186 (595)
Q Consensus 186 ~ 186 (595)
.
T Consensus 1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred H
Confidence 3
No 343
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.12 E-value=0.066 Score=51.94 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 351 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
..|+..|.+++...|.....+.+.+.++.+. |+.-.|+.....++.++|....+++.|+.++..++++.+|+++...
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 3444444444444444444444444444432 2333444444444444444444555555555555555555544444
Q ss_pred HHhcCC
Q 007634 428 CLKIDP 433 (595)
Q Consensus 428 al~~~p 433 (595)
+....|
T Consensus 471 lq~~~P 476 (758)
T KOG1310|consen 471 LQMSFP 476 (758)
T ss_pred HhhcCc
Confidence 444444
No 344
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.90 E-value=0.32 Score=34.20 Aligned_cols=64 Identities=14% Similarity=-0.010 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHhCCHHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG---KGICLQMQNMGRLAFDSFSEAVK 110 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~ 110 (595)
.+...++.|..++.+.+.++|+..++++++..++.+.-+.. +..++...|+|++.+.+..+-+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888889999999888887776654444 44556777888877776554443
No 345
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=3.1 Score=41.55 Aligned_cols=102 Identities=18% Similarity=0.093 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----------------
Q 007634 61 RNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----------------- 111 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 111 (595)
...|++|...|.-+... .|.+.+.++.++.+...+|+.+.|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45666777777666543 5777899999999999999999888888877632
Q ss_pred ----CCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 007634 112 ----DPQNAC---AHTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTD 162 (595)
Q Consensus 112 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~a~~~~~ 162 (595)
.|.|-. +++..-..+.+.|-+..|.++++-+++++|. ++-....+..++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL 389 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL 389 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH
Confidence 222322 3333445566789999999999999999998 66654444343333
No 346
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.56 E-value=0.092 Score=32.12 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
.++.++|.+|..+|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677888888888888888888887765
No 347
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=5.4 Score=40.44 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (595)
+-+-|.-.++..+|..+++.|...+...|.+...... +.....+..||....+.+.|.++++++-+.+|.++-......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3344666778889999999999999988876654443 788889999999999999999999999999999999888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 007634 199 VVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~ 220 (595)
.+....|.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998887654
No 348
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.54 E-value=0.068 Score=48.21 Aligned_cols=82 Identities=6% Similarity=-0.014 Sum_probs=43.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 007634 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN-LGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (595)
Q Consensus 325 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (595)
++....++++..|...+....+.|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...+.+++..+|+++.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3333445555555555555555555555555555555555555555544 333344455555555555555555555555
Q ss_pred HHH
Q 007634 404 AYN 406 (595)
Q Consensus 404 ~~~ 406 (595)
.|.
T Consensus 178 iw~ 180 (435)
T COG5191 178 IWI 180 (435)
T ss_pred HHH
Confidence 444
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.50 E-value=5.4 Score=39.33 Aligned_cols=168 Identities=11% Similarity=-0.034 Sum_probs=96.3
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
-.+.-....+.+++... .+-.+++.++.+|... ..++-...+++.++.+-++...-..++..|.+ ++.+.+..+|.+
T Consensus 80 ~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 80 HKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred hHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 34444556667777654 4567888999999988 66778889999999988888888888888877 888999999999
Q ss_pred HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC-CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-YADAMY-NLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
++...-.... ...+-.++..+-. .-..+.+.-+....+....... ...+.+ .+-.-|....++.+|++.+...++
T Consensus 157 a~yrfI~~~q-~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 157 ALYRFIPRRQ-NAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHhcchhh-hhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 8764322000 0000111111100 0012333333333332222111 122222 222344555667777777777777
Q ss_pred hCCCCHHHHHHHHHHH
Q 007634 329 FNPHCAEACNNLGVIY 344 (595)
Q Consensus 329 ~~~~~~~~~~~la~~~ 344 (595)
.+..+..+.-++...+
T Consensus 234 ~d~k~~~ar~~~i~~l 249 (711)
T COG1747 234 HDEKDVWARKEIIENL 249 (711)
T ss_pred hcchhhhHHHHHHHHH
Confidence 6666655555444433
No 350
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=3.3 Score=41.38 Aligned_cols=156 Identities=11% Similarity=0.060 Sum_probs=98.3
Q ss_pred hCChHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q 007634 170 AGNTQDGIQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----------------- 220 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 220 (595)
...|++|...|.-+... .|-+...+..++.+...+|+.+-|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577788777766654 5667889999999999999999988888887531
Q ss_pred ----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 007634 221 ----RPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (595)
Q Consensus 221 ----~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (595)
.|.+- -+++..-..+.+.|-+..|.++++-.++++|. ++.....+...|...+ .+|+=-++.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra------reYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA------REYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH------HhHHHHHHHHHHH
Confidence 12222 23444456677889999999999999999998 7765555555544443 3444344443333
Q ss_pred -----HhhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC
Q 007634 293 -----LYYNWHYADAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPH 332 (595)
Q Consensus 293 -----~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~~~~ 332 (595)
+...|+.+ .-..+|..|..... -+.|...+.+|+...|.
T Consensus 405 e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 12223321 22234444444443 45566666666666653
No 351
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=5.1 Score=38.41 Aligned_cols=162 Identities=13% Similarity=0.126 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYG------------EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 348 (595)
..+++++.-.+.+..+|+...+|...-.++. ...-.++-+.+...+++.+|+...+|+....++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 3456677777777888877665544332222 2224566778888999999999999999999999876
Q ss_pred --CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cC
Q 007634 349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG----KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD------AG 416 (595)
Q Consensus 349 --~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g 416 (595)
++..=++.++++++.+|.+..+|...=.+..... ...+=+++..+++..++.+..+|.....++.. .|
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g 203 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADG 203 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccC
Confidence 4688899999999999999887766555544433 35667889999999999999999888877763 33
Q ss_pred C------HHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 417 S------ISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 417 ~------~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+ ...-.+.-..|+-.+|+|..+|.-.
T Consensus 204 ~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 204 NFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 2 2344566677888899999887654
No 352
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.15 E-value=0.12 Score=31.52 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777778888888777777765
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.14 E-value=2.9 Score=41.74 Aligned_cols=167 Identities=16% Similarity=0.043 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
..+.-.-.-+....+|+++++....+ +.+..-| .......+..+..+|..+.|+...+ +++..+.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFe--- 326 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFE--- 326 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHH---
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhH---
Confidence 33444445566678999999887775 2232222 3456677778888898888877643 3444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
+..+.|+++.|.+..++. +++. .|..+|.....+|+++-|.++|+++- -+..+..+|...
T Consensus 327 LAl~lg~L~~A~~~a~~~-----~~~~-------~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~ 386 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL-----DDPE-------KWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSST 386 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC-----STHH-------HHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHC
T ss_pred HHHhcCCHHHHHHHHHhc-----CcHH-------HHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHh
Confidence 456788888887765432 2333 38888888888999999999888753 244566677777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 251 (595)
|+.+.-.+..+.+......+ ..-.++...|+.++.++.+.+.
T Consensus 387 g~~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGDIN-----IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHccCHH-----HHHHHHHHcCCHHHHHHHHHHc
Confidence 77766555555554433221 1123344456666666655543
No 354
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=2.9 Score=39.94 Aligned_cols=132 Identities=13% Similarity=0.128 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAV 354 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~----~~~~A~ 354 (595)
.+++-+.+...+++.+|+...+|.....++.+.+. +..=+...+++++.+|.+-.+|...-.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 56677888889999999999999999999998764 688899999999999999777766554444332 356778
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHh------cCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTV------QGK------MDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (595)
++..+++..++.+..+|.....++.. .|+ ...-++.-..++-.+|++..+|+..-..+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 88999999999999999988887762 231 23345566666777999988887744433
No 355
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.77 E-value=10 Score=39.85 Aligned_cols=382 Identities=13% Similarity=0.018 Sum_probs=209.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM---QNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
......+.+-..+...|++++-...-.++.+..|..+..|.....-... .++..++...|++++.-. +++..|...
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~ 189 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEV 189 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHH
Confidence 3445566777788889999988888888888888888877765554432 367778888999988643 444445444
Q ss_pred HHHH-------HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC---HH
Q 007634 123 GILY-------KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---AP 192 (595)
Q Consensus 123 a~~~-------~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~ 192 (595)
+... ...++++.-...|.+++..-.....--..+..++...-..+...-..++-+.++...+...-+. ..
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~ 269 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGW 269 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHH
Confidence 4433 4456788888899998875443322222234445555555555555677777777777654211 11
Q ss_pred HHHHHH---HHHHHcCCHHHHHHHHHH-------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 193 AYYNLG---VVYSELMQYDTALGCYEK-------AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 193 ~~~~la---~~~~~~g~~~~A~~~~~~-------al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
.|.... .......+++.|...+.+ .++..+.....|..+-......|+.-.-...+++++...+.+...|
T Consensus 270 ~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~w 349 (881)
T KOG0128|consen 270 DLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALW 349 (881)
T ss_pred HHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHH
Confidence 111111 111233445555544333 3333444445566666666777777777777777776666655555
Q ss_pred hhHHHHHHH---hhhh----hh-hcCCHHHHHHHHHHHH---hhCCCC-----------HH---HHHHHHHHHH-hcC--
Q 007634 263 NNMAIALTD---LGTK----VK-LEGDINQGVAYYKKAL---YYNWHY-----------AD---AMYNLGVAYG-EML-- 314 (595)
Q Consensus 263 ~~~~~~~~~---l~~~----~~-~~~~~~~A~~~~~~~~---~~~~~~-----------~~---~~~~la~~~~-~~~-- 314 (595)
...+...-. ++.. +. ..+...-...++++++ ..+... .. .+.+....+. ..+
T Consensus 350 i~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~ 429 (881)
T KOG0128|consen 350 IGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNI 429 (881)
T ss_pred hhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 443322110 0000 00 0001111111111111 111100 00 0111111111 111
Q ss_pred ----C-------HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHh
Q 007634 315 ----K-------FDMAIVFYELAFHF-NPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTV 380 (595)
Q Consensus 315 ----~-------~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~ 380 (595)
+ +..|..++...... -......+...|.+... +++.+.+.......+........ .|.....+-..
T Consensus 430 ~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~ 509 (881)
T KOG0128|consen 430 IDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLERE 509 (881)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHH
Confidence 1 33344444433332 11223445555555543 56888888888887777655544 78888888888
Q ss_pred cCCHHHHHHHHHHHHHh--CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 381 QGKMDAAAEMIEKAIAA--NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
.|+...+..++++++.. +|++ .+++..+-......|.++.....-.+.
T Consensus 510 ~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 510 YGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred hCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 89999999998888765 3432 345555566666677777666554443
No 356
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.68 Score=41.71 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
.++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|-+.-|++.++..++..|+.+.+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 34444556666666666666666666666666666666666666666666666666666666665443
No 357
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.51 E-value=0.18 Score=45.59 Aligned_cols=88 Identities=3% Similarity=-0.064 Sum_probs=68.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN-LGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
.|.++....++++..|...+......|-+.+--..|.+++..+|.+.+.|.. -+.-+...++.+.+...+.+++..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4455556677888888888888888888888888888888888888888876 455566778888888888888888888
Q ss_pred CHHHHHHHH
Q 007634 367 FSQSLNNLG 375 (595)
Q Consensus 367 ~~~~~~~la 375 (595)
++..|...-
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 888776543
No 358
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=14 Score=39.90 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=69.5
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH-------
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY--DTALGCYEKAALERPMYAE------- 226 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~------- 226 (595)
+..++..|...|..++|++.+.+..... +.....+-..-..+...+.- +-..++-.-.++.+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6678889999999999999999988733 33344455555555566655 6666666666666654211
Q ss_pred ----HH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHH
Q 007634 227 ----AY--CNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTD 271 (595)
Q Consensus 227 ----~~--~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~ 271 (595)
.- ...-.-+......+-++.+++.++..... ....+..++..|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 00 11122245667788888999998877655 33334444444433
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.06 E-value=10 Score=37.58 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=69.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
+-..++.+-..+-++.++.-...++.+++... .+-.+++.++.||... ..++-...+++.++.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34455666666666667777777788877753 4567788888888877 446677778888888877777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 007634 127 KDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~ 145 (595)
.+ ++...+..+|.+++..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HH-hchhhHHHHHHHHHHH
Confidence 66 7778888888887753
No 360
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=7 Score=35.43 Aligned_cols=209 Identities=10% Similarity=-0.018 Sum_probs=101.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH---HhhC--CCCHHH
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA---LKID--PHYAPA 193 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~---l~~~--~~~~~~ 193 (595)
..+++-..+.+++++|+..|.+.+..... +.......-.....++.+|...|++..--+..... .... |.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 34555566677777777777777765322 11222222334566777777777765444333222 2111 111111
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 194 YYNLGVVY-SELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 194 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
...+-.-+ .....++.-+......++-.... ...-..+..++++.|+|.+|+......+....... ....+.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-DK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-DKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-Ccccee
Confidence 11111111 12234455555555544432111 23345567889999999999998877654321110 001112
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhh-----CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYY-----NWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 329 (595)
.++..-..+|....+..++...+..+-.. .|... ..-..-|...+...+|.-|..+|-++++-
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 22222233333344555554444433221 23221 22223355566667788888887777764
No 361
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=92.87 E-value=4.1 Score=39.88 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH--HHHHH--HHHHHHhCCHHHHHHHHHHHHHc
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVE--AHIGK--GICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 111 (595)
+..+..+..+++.++|..|.++++.+...-|.+.. .+..+ |..+...-++++|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677899999999999999999999886344433 44444 34446778899999999988765
No 362
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.74 E-value=0.74 Score=34.50 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~--~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
..+.|++.+|++.+.+............ ..+..++..++.+....|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567888888888887776543322211 123334555666666666666666666666654
No 363
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.66 E-value=0.49 Score=27.80 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 007634 404 AYNNLGVLYRDAGSISLAIDA--YEQCLKIDPD 434 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 434 (595)
.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455556666666666666666 3355555544
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.59 E-value=8.3 Score=35.44 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc
Q 007634 221 RPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 221 ~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~ 254 (595)
.|...+.+...+. .|...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444555554443 356678888888777666554
No 365
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.50 E-value=1.4 Score=40.40 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
..++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3466667777778888888888888888888888888888888888888888888888777653
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.42 E-value=8.8 Score=35.30 Aligned_cols=26 Identities=8% Similarity=-0.152 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFY 323 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~ 323 (595)
.+++.+..+|..+.+.|++.+|..+|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35778888888888888887777666
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=0.63 Score=41.90 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
..++-..+...++++.|....++.+.++|+++.-+.-.|.+|.++|-+.-|++.+...++..|+++.+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34444556666677777777777777777777666777777777777777777777777777776654
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.17 E-value=0.22 Score=26.74 Aligned_cols=23 Identities=17% Similarity=-0.045 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555543
No 369
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.08 E-value=2 Score=41.00 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=69.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADP-----------SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~-----------~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (595)
-|..++++++|..|..-|..++++.. ...+....-..+...+..||...++.+-|+...-+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 35567777888888777777776532 2223333334455667888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKA 217 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (595)
..-+...|.++..+.+|.+|-..+--+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887665443
No 370
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.95 E-value=1.3 Score=42.25 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=76.8
Q ss_pred CchHHHHH----HHHHHHhCCCHHHHHHHHHHHHHcC--------CC-----CH-----HHHHHHHHHHHHhCCHHHHHH
Q 007634 46 FEGKDALS----YANILRSRNKFVDALALYEIVLEKD--------SG-----NV-----EAHIGKGICLQMQNMGRLAFD 103 (595)
Q Consensus 46 ~~~~~~~~----~a~~~~~~g~~~~A~~~~~~~l~~~--------p~-----~~-----~~~~~la~~~~~~g~~~~A~~ 103 (595)
...+.|+. -|...+++++|..|..-|..+++.- |. +. .+-..+..||+.+++.+.|+.
T Consensus 170 PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn 249 (569)
T PF15015_consen 170 PQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN 249 (569)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 34555544 5667888999988888888888742 21 11 234568899999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142 (595)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 142 (595)
...+.+.++|....-+...|.++..+.+|.+|...+--+
T Consensus 250 h~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 250 HSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987765544
No 371
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=7.4 Score=40.92 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=72.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYS 202 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~ 202 (595)
.++.+...|+-|+...+.- ..+.+ .++.+....|..++..|++++|...|-+.+.. +|.. + ..-+.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~----~~d~d---~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~--V----i~kfL 408 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ----HLDED---TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE--V----IKKFL 408 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc----CCCHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH--H----HHHhc
Confidence 4456666777777665432 11222 24566888899999999999999999888765 2321 1 11123
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
......+-..+++.+.+..-.+.+--..|-.+|.++++.++-.++.++
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 333444555666666666656666667778889999988776555443
No 372
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.89 E-value=1.1 Score=41.04 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (595)
...+..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4456678899999999999999999999999999999999999999999999999999988664
No 373
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.84 E-value=0.76 Score=34.46 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=33.4
Q ss_pred hcCCHHHHHHHHHHHHHhCC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 380 VQGKMDAAAEMIEKAIAANP---------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
..|++.+|.+.+.+.+.... ....+..++|.++...|++++|+..+++++++..+.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544311 113456667777777777777777777777765443
No 374
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.64 E-value=12 Score=37.34 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
.++++++....+.. ++.|.- ......++..+...|.++.|+...+ ++...+.|+ .+.|+.+.|.+..
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~~~a 341 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIALEIA 341 (443)
T ss_dssp TT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHHHHC
T ss_pred cCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHHHHH
Confidence 46677665555411 111221 3345566667777777777766532 233333333 4566666665543
Q ss_pred HHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 358 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
+ ..+++..|..||.....+|+++-|.++|+++
T Consensus 342 ~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 342 K-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp C-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred H-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 2 2235566777777777777777777666654
No 375
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.56 E-value=11 Score=34.84 Aligned_cols=144 Identities=12% Similarity=0.015 Sum_probs=82.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 007634 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (595)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~ 165 (595)
+.+-....+..+..+-++....+++++|....++..++.-- ..-..+|...++++++..... ++...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~-----------yr~sq 254 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI-----------YRQSQ 254 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH-----------HhhHH
Confidence 34445555667777888888899999999988888877543 334667888888887753321 11111
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~ 242 (595)
.....|...+|. .+.+.+ ....-..++.+..++|+..+|.+.++...+..|-. ..++-++-..+....-|.
T Consensus 255 q~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 255 QCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred HHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222221 111111 12233467888888888888888888887776632 223444444555544444
Q ss_pred HHHHHH
Q 007634 243 SAIACY 248 (595)
Q Consensus 243 ~A~~~~ 248 (595)
+....+
T Consensus 329 DvqavL 334 (556)
T KOG3807|consen 329 DVQAVL 334 (556)
T ss_pred HHHHHH
Confidence 443333
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.51 E-value=0.78 Score=26.94 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALAL 70 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~ 70 (595)
.++..|-.+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 377
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.43 E-value=11 Score=34.15 Aligned_cols=64 Identities=9% Similarity=0.181 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcC
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLD 112 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 112 (595)
+.++.+|..+.+.|+|++.+.+.++++..+|. +.+-...++.+|- ..|....+...+.......
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 46788999999999999999999999998775 4555666666663 3355556666665554443
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.38 E-value=2 Score=30.30 Aligned_cols=62 Identities=18% Similarity=0.080 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH---THCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
-....|.-++...+.++|+..++++++..++.+.-+ -.+..+|...|+|.+.+.+.-+-+++
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677889999999999999999988776644 44556788899999988877665543
No 379
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.37 E-value=14 Score=35.45 Aligned_cols=201 Identities=17% Similarity=0.050 Sum_probs=116.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----------C------C
Q 007634 57 ILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----------P------Q 114 (595)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p------~ 114 (595)
.....|-+.+--...-++++.-|. +...++.+...++..|. ++...+...+-.. | .
T Consensus 39 ~~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~ 116 (493)
T KOG2581|consen 39 AQIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQSALK 116 (493)
T ss_pred HHHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCcccccccccccccc
Confidence 345566555555555556655443 34455555555544443 4544444433210 1 0
Q ss_pred ------cHHHHHH-HH-HHHHHcCCHHHHHHHHHHHHhcC-CCC-HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 007634 115 ------NACAHTH-CG-ILYKDEGRLVEAAESYHKALSAD-PSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 115 ------~~~~~~~-la-~~~~~~g~~~~A~~~~~~~l~~~-~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (595)
..+++.. ++ ..+..++++.+|..+-...+... -.+ ......-+.+|+.+...+...|+...-...+...+
T Consensus 117 ~k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~l 196 (493)
T KOG2581|consen 117 RKPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALL 196 (493)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 0223322 23 23344688888888877665431 111 12222335567777777888888666555555444
Q ss_pred hh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 185 KI-----DPH-YAPAYYNLGVVYSELMQYDTALGCYEKAAL----ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 185 ~~-----~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
.. +.. .......+-..|...+.|+.|.....+..- .+...+..++.+|.+..-+++|..|.+++-+++..
T Consensus 197 rtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 197 RTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 33 111 234455667778888888888888777641 11123556777888888899999999999999998
Q ss_pred CCCcH
Q 007634 255 SPNFE 259 (595)
Q Consensus 255 ~~~~~ 259 (595)
.|.+.
T Consensus 277 apq~~ 281 (493)
T KOG2581|consen 277 APQHA 281 (493)
T ss_pred Ccchh
Confidence 88743
No 380
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.20 E-value=13 Score=34.60 Aligned_cols=60 Identities=12% Similarity=-0.140 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (595)
.-.+.-+...+..+..+-++.-..+++++|+.+.++..++.-- ..-..+|.+.|+++++.
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 3345556667788888889999999999999999999887643 23466788888888765
No 381
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.19 E-value=0.34 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~ 391 (595)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 382
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.92 E-value=3.8 Score=35.28 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 007634 351 DKAVECYQMALSI-KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 351 ~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 422 (595)
++|...|-++-.. .-++++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4555555443222 1234666666666555 45667777777777766432 3677777777777777777664
No 383
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.84 E-value=16 Score=35.11 Aligned_cols=141 Identities=13% Similarity=0.043 Sum_probs=100.9
Q ss_pred chHHHHHH--HHHHHhCCCHHHHHHHHHHHHHcCC-C--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---
Q 007634 47 EGKDALSY--ANILRSRNKFVDALALYEIVLEKDS-G--------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--- 112 (595)
Q Consensus 47 ~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~p-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 112 (595)
+.+.++.+ ...+..++++.+|..+-+..+..-- . .+..|+.+..++...|+...-...+...+...
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 45555443 4455667999999998887765311 1 24578888888888998777666666555432
Q ss_pred --C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 113 --P-QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 113 --p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
. ........+-..|...+.|+.|.....+.. .|+.... ...+..++.+|.+...+++|..|.+++-+++...|.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn-ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN-NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc-HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 1 223455666788888999999998887764 3433222 245777899999999999999999999999999997
Q ss_pred C
Q 007634 190 Y 190 (595)
Q Consensus 190 ~ 190 (595)
+
T Consensus 280 ~ 280 (493)
T KOG2581|consen 280 H 280 (493)
T ss_pred h
Confidence 4
No 384
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=90.61 E-value=15 Score=34.36 Aligned_cols=158 Identities=12% Similarity=0.083 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--------------------------HHHHHHHHHHHHhhC-CCC
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------------------FDMAIVFYELAFHFN-PHC 333 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------------------~~~A~~~~~~~l~~~-~~~ 333 (595)
--++|+..-.-...+.|..++++-.++.+++...+ .+++...+.+++... |.-
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGP 290 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGP 290 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCCh
Confidence 45778888888888899999988887777654322 467777777777653 333
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHH
Q 007634 334 AEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYN 406 (595)
Q Consensus 334 ~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 406 (595)
....-.++.++.. .-++..-..+|.-.....|+ +.+-.|.+....+..-.+.++...+..... -....-.+.
T Consensus 291 YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~ 369 (415)
T COG4941 291 YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHA 369 (415)
T ss_pred HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHH
Confidence 3333344444433 23666666677666666654 555566777776766777777777766554 223345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
..|.++.++|+.++|...|++++.+.++..+..
T Consensus 370 ~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 370 ARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 789999999999999999999999998876543
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=18 Score=39.13 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCcHHHHhhH-
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALER----PMYAEAYCNMGVIYKNRGDL--ESAIACYERCLAVSPNFEIAKNNM- 265 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~- 265 (595)
-+..|+.+|...|+.++|++.+.+..... +...+.+-..-..+...+.. +-..++-.-.+..+|......+.-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36778899999999999999999887733 33344444455555555554 556666666666666533111000
Q ss_pred -----HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC
Q 007634 266 -----AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298 (595)
Q Consensus 266 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 298 (595)
+.+-...-.-+......+-++.+++.++.....
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~ 623 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL 623 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc
Confidence 000000001123345666677777777766544
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.26 E-value=1.1 Score=36.28 Aligned_cols=53 Identities=19% Similarity=0.077 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG 98 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 98 (595)
...+..+..|+..+..|+|.-|..+.+.++..+|++..+...++.++..+|.-
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999999999999999999999999888888777643
No 387
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.97 E-value=0.72 Score=27.44 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
+..||.+-...++|++|+..|+++++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 388
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.89 E-value=5.1 Score=34.50 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 007634 172 NTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAI 245 (595)
Q Consensus 172 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~ 245 (595)
.-++|...|.++-... -++++..+.+|..|. ..+.++++..+.++++..+. +++++..|+.++...|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566777776654332 246888888888777 67899999999999987543 5899999999999999999885
No 389
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.65 E-value=0.64 Score=27.65 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+++..||.+-...++|++|..-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999864
No 390
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=89.61 E-value=21 Score=35.65 Aligned_cols=54 Identities=17% Similarity=-0.073 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 007634 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (595)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (595)
....+|.+++..|+|+-|...|+.+.+-.. +..++..+|-++...|.+....+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A~~~Em~alsl~~~~~ 263 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLAGAQEMAALSLLMQGQ 263 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHHhHHHHHHHHHHhcCC
Confidence 456789999999999999999998877433 345566666666666666666553
No 391
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=31 Score=35.42 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
..+...|...++..+|..+++.|...+...|.+ +.....++.||..+.+.+.|.+.+++|-+.+|.++-.....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345678889999999999999999999876654 45677889999999999999999999999999999998888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 123 GILYKDEGRLVEAAESYHKALSAD 146 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~ 146 (595)
-.+....|.-++|+.+..+.....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 899999999999999998876643
No 392
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=88.36 E-value=29 Score=34.63 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=91.3
Q ss_pred CchH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHc
Q 007634 46 FEGK-DALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMG-------RLAFDSFSEAVKL 111 (595)
Q Consensus 46 ~~~~-~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 111 (595)
..++ ..-.+|..++-.|+|+-|...|+.+.+..-++ +.+....|.+++..+.. ++...+++.++..
T Consensus 205 ~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 205 DSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred CChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 3444 44558999999999999999999887643322 12333445555555522 2333344433321
Q ss_pred -----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHH--HHhCChHHH
Q 007634 112 -----------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSL--KLAGNTQDG 176 (595)
Q Consensus 112 -----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~A 176 (595)
......+....+.++...|.+.+|...+-+.... ..+... ..-+.++...+.++ ........-
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~--~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP--FGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh--HhhHHHHHHHHHhhcccccCCCCcc
Confidence 1123456667778888888888887777666654 222110 00233444555555 111000000
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007634 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (595)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 222 (595)
...+++ .+..+..-|.-|...|+...|+.+|.+++....
T Consensus 363 ~~r~RK-------~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 363 LTRFRK-------YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred chhhHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000010 122233446677788888888888888876643
No 393
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.33 E-value=12 Score=30.37 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=27.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
...+.....+.+++.++..++.++..+..+..+|.+.+ ..+.+.+++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34556667777777776666666666666666665542 334444444
No 394
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.97 E-value=2.6 Score=38.23 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
+...+..|...|.+.+|+++.++++.++|-+.+.+..+-.++..+|+--.|.+.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456667778888888888888888888888888888888888888777777777654
No 395
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.42 E-value=2.1 Score=39.94 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 319 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
|..+|.+|..+.|.+...++.+|.+....|+.-.|+-+|-+++......+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999887765567788888888776
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.09 E-value=20 Score=32.69 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
+...+|..|+..|++++|+++|+.+...... ...++..+..|+...|+.+..+.+.-+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445566666666666666666666443221 1345556666666677666666555443
No 397
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.00 E-value=2.8 Score=39.14 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
|..+|.+|..+.|..+..+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997765568888888888776
No 398
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.90 E-value=27 Score=32.71 Aligned_cols=161 Identities=15% Similarity=0.040 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------------------------CHHHHHHHHHHHHhcCC-CCH
Q 007634 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------------------------RLVEAAESYHKALSADP-SYK 150 (595)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------------------------~~~~A~~~~~~~l~~~~-~~~ 150 (595)
-++|+..-.-...+-|..++++-.++.+.++.. -.+++...+.+++.... .-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 367888877788888988888877777665422 25667777777776543 211
Q ss_pred HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Q 007634 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAY 228 (595)
Q Consensus 151 ~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 228 (595)
.....++.++- .......-+|..-..+|.-.....|+ +.+-.|.+.......-.+.++...+.+... -......+
T Consensus 292 qlqAAIaa~HA--~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h 368 (415)
T COG4941 292 QLQAAIAALHA--RARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH 368 (415)
T ss_pred HHHHHHHHHHH--hhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence 11111111111 11122334666666667666666665 555566777777766777788877776554 23345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 229 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
...|.++.+.|+.++|...|++++.+.++..+.
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 778999999999999999999999998876543
No 399
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.70 E-value=34 Score=33.59 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (595)
+...+.+++..+|+|..|++.++..-- ..+-....++.+|-+|..+++|.+|+..|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777654311 1222355677788888888888888888877653
No 400
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.54 E-value=47 Score=35.14 Aligned_cols=158 Identities=17% Similarity=0.060 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH
Q 007634 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (595)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~ 166 (595)
..-.++...|+|+.|+.++-+ .+.+..--..+|.++...|-+...-..-...+...+.++.. ..++.+......
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~- 336 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTR- 336 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHH-
T ss_pred HHHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHH-
Confidence 344567788999999998876 22222222223333333333332222225555555554332 444555555444
Q ss_pred HHHhCChHHHHHHHHHHHhhC-CCCH-HHHHHHHHHHHHcCCHHHH--------------HHHHHHHHHhCCCC---HHH
Q 007634 167 LKLAGNTQDGIQKYYEALKID-PHYA-PAYYNLGVVYSELMQYDTA--------------LGCYEKAALERPMY---AEA 227 (595)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~-~~~~-~~~~~la~~~~~~g~~~~A--------------~~~~~~al~~~~~~---~~~ 227 (595)
.+...+..+|+++|--+-... |... ..+..+..+....++++.= ++-..+.+...... ..+
T Consensus 337 ~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i 416 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREI 416 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHH
Confidence 445678888888775433221 2211 1222333333333332221 11111122222211 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 007634 228 YCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
....|.-....|++++|+..|.-
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~L 439 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHL 439 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556666677777777776654
No 401
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.48 E-value=26 Score=32.02 Aligned_cols=27 Identities=0% Similarity=0.070 Sum_probs=19.3
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
-+.+..++...|+..+|+..+++=+..
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455667777788888888887765544
No 402
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.32 E-value=1.9 Score=26.70 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 406 NNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+.||..|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455666666666666666666653
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=86.16 E-value=17 Score=32.77 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 194 YYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
+..++.+..+.|+|++.+.++++++..++.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 345566666666677777776666666554
No 404
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.92 E-value=6.4 Score=34.21 Aligned_cols=58 Identities=21% Similarity=0.095 Sum_probs=29.5
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
+.+.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-++.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344445555555555555555555555555555555555555555555555555443
No 405
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.83 E-value=4 Score=37.09 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 144 (595)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+...|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4456677788889999999999999999998888888888999999988888877776543
No 406
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.55 E-value=20 Score=36.45 Aligned_cols=153 Identities=18% Similarity=0.058 Sum_probs=82.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (595)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (595)
.+...|+++.|...+..+ | -+.....+..+..+|-.++|++ +.++. .- .-.+..+.|+++.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~-d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDP-DQ---RFELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCCh-hh---hhhhhhhcCcHHHHH
Confidence 556677777777644333 2 2344555666666666665544 33321 11 223456677888777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (595)
.+..++- +..- |..+|......+++..|.+++.++... ..|-.++...|+-+.-...-..
T Consensus 658 ~la~e~~-----s~~K-------w~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 658 DLAVEAN-----SEVK-------WRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHhhc-----chHH-------HHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHHHHHH
Confidence 6655442 1222 677777778888888888888776442 2223333444444332222222
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (595)
Q Consensus 217 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 251 (595)
+-+....+.. -.++...|+++++.+.+.+.
T Consensus 718 ~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 2222222111 13456677777777766554
No 407
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=1.6 Score=40.73 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=30.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
++.+-...+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++..
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 4444444444444444444444444444444444444444444555555555555444444443
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.83 E-value=2.3 Score=26.31 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
+.+|..|...|+++.|..++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.81 E-value=26 Score=30.66 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=57.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 007634 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (595)
...+++.+...+|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-.+.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45678899999999999999999999999999999999999999999999999999999764
No 410
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.45 E-value=2.7 Score=23.50 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 007634 63 KFVDALALYEIVLEKDSGNVEAHIGKG 89 (595)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la 89 (595)
+.+.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 455555566666655555555555444
No 411
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=83.32 E-value=2.4 Score=43.64 Aligned_cols=259 Identities=13% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HccCC-CCHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNP-HCAEACNNLGVIYKDRDNLDKAVECYQMA--LSIKP-NFSQSLNN 373 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~~-~~~~~~~~ 373 (595)
......-+..+...|++..|...+.+.-. +.+ .........|.+....|++++|+..+... ..+.+ .....+..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l 103 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHH
Confidence 34556667888888889888888887662 222 23455666788888888888988888641 11111 12345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhcc-CC
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN-EG 452 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~ 452 (595)
.+.++...|++-+|...+-..-.+-++......+.-.+...+...... .+.. ...+++......+-++..+-. ..
T Consensus 104 ~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~~--~L~~--~~~~~~~~l~GWl~La~i~~~~~~ 179 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPPE--QLQQ--LRRASEPDLQGWLELALIYRQYQQ 179 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCHH--HHHh--hhcCCCHHHHHHHHHHHHHHhccC
Confidence 788888888887777665554433221111111111111111111111 1111 111111111111111111111 23
Q ss_pred CcHHHHHHHHHHHHHHHhhccc--cCC-CCC--CCCCCCCeEEEEe---cCCcccchHHHhhhhhhccc---CCCceEEE
Q 007634 453 HDDKLFEAHRDWGKRFMRLYSQ--YTS-WDN--TKDPERPLVIGYV---SPDYFTHSVSYFIEAPLVYH---DYQNYKVV 521 (595)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~--~~~~~~~l~igy~---s~d~~~h~~~~~~~~~~~~~---d~~~fe~~ 521 (595)
+..........|..+++..... .|. ... ...+..+-+|+.+ |+.|.... .-.-.+++..+ .....+|.
T Consensus 180 ~p~~l~~al~~Wq~~yP~HPA~~~lP~~l~~~~~~~~~~~~~IavLLPlsG~~a~~~-~aI~~G~~aA~~~~~~~~~~l~ 258 (536)
T PF04348_consen 180 DPAQLKQALNQWQQRYPNHPAAQYLPAALQQLLALQPAPPQRIAVLLPLSGRLARAG-QAIRDGFLAAYYADADSRPELR 258 (536)
T ss_dssp ------------------------------------------EEEEE--SSTTHHHH-HHHHHHHHHHH---TT--S-EE
T ss_pred CHHHHHHHHHHHHHhCcCCcccccCCHHHHHHHhhccCCccCEEEEeCCCCchhHHH-HHHHHHHHHhhcccccCCCceE
Confidence 3444555566777766543211 010 000 0112223355555 66666432 22445666666 46778999
Q ss_pred EeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCC
Q 007634 522 VYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKI 567 (595)
Q Consensus 522 ~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~i 567 (595)
+|.+... ++..-+++.+...+ .| -|.++.-.++.+.+....+
T Consensus 259 ~~Dt~~~--~~~~~~~~a~~~ga-~~-ViGPL~k~~V~~l~~~~~~ 300 (536)
T PF04348_consen 259 FYDTNAD--SADALYQQAVADGA-DF-VIGPLLKSNVEALAQLPQL 300 (536)
T ss_dssp EEETTTS---HHHHHHHHHHTT---E-EE---SHHHHHHHHH-GG-
T ss_pred EecCCCC--CHHHHHHHHHHcCC-CE-EEcCCCHHHHHHHHhcCcc
Confidence 9986433 44445555443322 23 3568887777777777654
No 412
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=82.57 E-value=37 Score=30.70 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALE-RP--MYAEAYCNMGVIYKN-RGDLESAIACYER 250 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~-~~--~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 250 (595)
.++.+..+.++|++.+.+..++++. +| -+.+-...++.+|.. .|....+...+..
T Consensus 6 ~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 6 YMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 4555555556666666666665554 22 233444444444432 3444444444443
No 413
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.28 E-value=72 Score=33.80 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEI 73 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 73 (595)
.+....+.....+++.|.+++|.++...
T Consensus 109 ~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~ 136 (613)
T PF04097_consen 109 VNGDPIWALIYYCLRCGDYDEALEVANE 136 (613)
T ss_dssp ETTEEHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566678888899999999999999843
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.09 E-value=54 Score=32.21 Aligned_cols=64 Identities=17% Similarity=-0.000 Sum_probs=40.6
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA--PAYYNL--GVVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 220 (595)
+......+...+..++|..|.+.+..+...-|... ..+..+ |..+...-++++|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445566667778888888888888877523322 233333 33445667788888888877654
No 415
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.44 E-value=4.5 Score=22.51 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHH
Q 007634 385 DAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~ 406 (595)
+.|...|++++...|.++..|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3344444444444443333333
No 416
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.37 E-value=3.6 Score=38.48 Aligned_cols=83 Identities=17% Similarity=0.073 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
.....+++.+-.+.+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++..+...+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34455577777788888888887777777777778888888888888888888888888888888887766655555444
Q ss_pred HcC
Q 007634 414 DAG 416 (595)
Q Consensus 414 ~~g 416 (595)
...
T Consensus 355 ~~~ 357 (372)
T KOG0546|consen 355 KKK 357 (372)
T ss_pred HHH
Confidence 433
No 417
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=79.86 E-value=36 Score=28.82 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYG-----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----- 348 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~----- 348 (595)
+.++++|...|+.--..+. .+...+.+|..++ ..++...|++.+..+-. .+.+.+..++|.++....
T Consensus 48 ~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 3456666666655443222 2334444444332 23456677777776655 344566666666655321
Q ss_pred --CHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 007634 349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (595)
Q Consensus 349 --~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (595)
+.++|.+++.++-.+ ++..+.+.|...+.
T Consensus 125 dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDL--EDGEACFLLSTMYM 155 (248)
T ss_pred CCCcHHHHHHHHHhccC--CCchHHHHHHHHHh
Confidence 356777777777655 34455555555544
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.84 E-value=31 Score=33.84 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-------Hc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVL-------EK-DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l-------~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (595)
.++.+.+.+.-.|+|..|++.++.+- .. .+-+...++..|-+|+.+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888999999999987641 11 122456788999999999999999999988763
No 419
>PF12854 PPR_1: PPR repeat
Probab=78.43 E-value=6.8 Score=22.53 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQ 358 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~ 358 (595)
...|..+...+.+.|+.++|.+.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344445555555555555555444
No 420
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.70 E-value=1.3e+02 Score=33.86 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH---HHHHHHH
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL---NNLGVVY 378 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~ 378 (595)
++...|..+...+.+++|.-.|+++=+. -.--.+|...|++.+|+....+ +.+...+.. ..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~q---l~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQ---LSEGKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHh---hcCCHHHHHHHHHHHHHHH
Confidence 4444555555666666655544443111 0011222333555555544433 223333333 6677777
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
..++++-+|-+.....+. +|..+ -.+|.+...|++|+.....+
T Consensus 1010 ~e~~kh~eAa~il~e~~s-d~~~a------v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLS-DPEEA------VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhc-CHHHH------HHHHhhHhHHHHHHHHHHhc
Confidence 888888888887776654 22222 22344445566666655444
No 421
>PF12854 PPR_1: PPR repeat
Probab=77.37 E-value=6.5 Score=22.62 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 116 ACAHTHCGILYKDEGRLVEAAESYHK 141 (595)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~ 141 (595)
...|..+...+.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44556666666666666666666654
No 422
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=77.02 E-value=65 Score=30.20 Aligned_cols=104 Identities=12% Similarity=0.012 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH----HhCChHHHHHHHHHHHhhCCCCH
Q 007634 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK----LAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~----~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
.+++...|..|.+.|+-+.|.+.+.+..+..-.... ..........+|..+. -....++|-..+++.-.-+.. -
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~-kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr-N 181 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH-KIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR-N 181 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc-chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh-h
Confidence 345566666666666666666655555432211000 0000111222222222 122334444444443322221 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALER 221 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (595)
..-...|...+...++.+|-..|-..+...
T Consensus 182 RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 182 RLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 222234555556666777777666665543
No 423
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=76.50 E-value=78 Score=30.82 Aligned_cols=57 Identities=19% Similarity=0.067 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHH--HHhCCHHHHHHHHHH
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICL--QMQNMGRLAFDSFSE 107 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~--~~~g~~~~A~~~~~~ 107 (595)
....+..+++.++|..|...|+++....++. ...+..++.+| ...-++++|.+.+++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3446778999999999999999999875422 23444454444 566788899999985
No 424
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.87 E-value=60 Score=29.68 Aligned_cols=158 Identities=9% Similarity=-0.004 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHH
Q 007634 284 QGVAYYKKALYYNWHYADAMYNLGVAYGE--------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--DNLDKA 353 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--~~~~~A 353 (595)
.|++.-...+..+|....+|...-.+... ..-.+.-+..+..+++.+|.+..+|...-.++... .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 34444445555555544444433333322 11245566778888899999999998887777665 567888
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHcCC------H
Q 007634 354 VECYQMALSIKPNFSQSLNNLGVVY------TVQGKMDAAAEMIEKAIAANPTYAEAYNNL---GVLYRDAGS------I 418 (595)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~------~ 418 (595)
+...++.+..++.+...|...-.+. .....+.+-.++-..++..++.+..+|... -......|+ +
T Consensus 130 l~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l 209 (328)
T COG5536 130 LFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYL 209 (328)
T ss_pred HHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHH
Confidence 8888999999998877665544444 333344555666677788899888888776 333333444 4
Q ss_pred HHHHHHHHHHHhcCCCChhhhhh
Q 007634 419 SLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
++=+++...++-.+|++..++.-
T Consensus 210 ~~eL~~i~~~if~~p~~~S~w~y 232 (328)
T COG5536 210 EKELEYIFDKIFTDPDNQSVWGY 232 (328)
T ss_pred HHHHHHHHhhhhcCccccchhhH
Confidence 55667777788889999887654
No 425
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.86 E-value=2.4e+02 Score=36.14 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (595)
++.+...|....+.|+.++|-..|..|++++...+.+|...|...
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455666677777777777777777777777666666666666543
No 426
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=75.49 E-value=23 Score=28.17 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
..+|+-++-.+.+....+....+++.+..+|.+|.+.|+..+|-+.+++|-+
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444444444444444433334455566666666666666666665555544
No 427
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.37 E-value=12 Score=32.65 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+..++..++.+...|+ +..+..++.++...|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34455666677777775 788888888999999999999999999888883
No 428
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.44 E-value=61 Score=33.17 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=29.7
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (595)
+.|+++.|.++..++ ++..-|..||.+....+++..|.+++.++.
T Consensus 649 ~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 346666666554433 445667777777777777777777777763
No 429
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=74.01 E-value=55 Score=27.83 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcC
Q 007634 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA----GSISLAIDAYEQCLKID 432 (595)
Q Consensus 378 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 432 (595)
+.-..+.++|.++--++-++. ++.+..++.+.|..- .+.++|..+-.+|.++.
T Consensus 178 ~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 334456666766666666553 345555555555432 25566666666666653
No 430
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=73.89 E-value=1.6e+02 Score=33.15 Aligned_cols=22 Identities=9% Similarity=-0.080 Sum_probs=9.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 007634 339 NLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~a 360 (595)
.|+.-+..++++-+|-+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHH
Confidence 3344444444444444444443
No 431
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=72.74 E-value=49 Score=26.77 Aligned_cols=49 Identities=12% Similarity=0.084 Sum_probs=32.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 007634 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106 (595)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (595)
.+...+.....+.+++.++..++.++..+..+..++... +..+.++.+.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 334567788888888888877776777777777777654 3344455544
No 432
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.28 E-value=80 Score=29.01 Aligned_cols=130 Identities=18% Similarity=0.061 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------HHHHH----HHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN----------VEAHI----GKGICLQMQNMGRLAFDSFSEAVKLDP 113 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p 113 (595)
..-+-..|+.+.-..+|..|+..+++.++.-..+ .+... .=..++..++++.+++...-+..+.-.
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 3445556788899999999999999998742111 11111 123456788899998888777665433
Q ss_pred Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHhHHHHHHhCChHHHHHHH
Q 007634 114 QN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA--AECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (595)
Q Consensus 114 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~~a~~~~~l~~~~~~~~~~~~A~~~~ 180 (595)
+- +.++..-..+|.+.|++....+.-...+. +|.|... +..+++. .+-.++.=.|.+++|.+..
T Consensus 115 klPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaEL--yLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 115 KLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAEL--YLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHH--HHHHHHhccccHHHHHHHH
Confidence 33 34555555677788888888777776665 3444322 1122222 2233444456666666554
No 433
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.12 E-value=13 Score=30.15 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
....+...+..|++.-|..+...++..+|++..+...++.++.+
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
No 434
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=71.47 E-value=80 Score=28.65 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC--CCHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEK-DS--GNVEAHIGKGICLQM-QNMGRLAFDSFSEA 108 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 108 (595)
+.++.+|...-+.++|++.+...+++++. +| -+.+-...+..+|-. .|....+...+...
T Consensus 2 e~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 2 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 35677899999999999999999999886 44 456677777777753 46777777777663
No 435
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.33 E-value=34 Score=27.34 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=30.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
+..+|+-++-.+.+....+....+++.+..+|.+|.+.|+..++-+.+.+|.+.
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445556565555666655544556677777777777777777777777766543
No 436
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=70.81 E-value=24 Score=24.91 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
+..+...|..+-+.|++.+|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566677777777877777777666554
No 437
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.56 E-value=58 Score=34.25 Aligned_cols=119 Identities=14% Similarity=0.183 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC-
Q 007634 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID- 187 (595)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~- 187 (595)
.++....+-..|....+|+.-++..+..-.+ |+..+. .+.++.++.. -.+-|+-++|+...-.+++..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNR----RNr~GDRakAL~~~l~lve~eg 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNR----RNRPGDRAKALNTVLPLVEKEG 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcc----cCCCccHHHHHHHHHHHHHhcC
Confidence 4566677777788888888877777665443 432111 0111111211 123578888888888777764
Q ss_pred CCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 188 PHYAPAYYNLGVVYSE---------LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 188 ~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
|-.++.+...|.+|.. .+..+.|+++|+++.+..|.... =.+++.++...|
T Consensus 275 ~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG 334 (1226)
T KOG4279|consen 275 PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG 334 (1226)
T ss_pred CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence 3456666666766653 35567788888888888776322 234444444444
No 438
>PF13041 PPR_2: PPR repeat family
Probab=69.47 E-value=26 Score=22.16 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
|..+-..+.+.|++++|.++|++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 439
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=69.30 E-value=26 Score=27.01 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEK 77 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (595)
..+..|...+..|++..|.+.+.++-+.
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344444444444444444444444333
No 440
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.25 E-value=1.1e+02 Score=29.69 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=48.3
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----CCHHHH
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER----P----MYAEAY 228 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~----~~~~~~ 228 (595)
+..+|.-|...|+++.|++.|.++-.- .......+.++-.+-...|+|..-..+..++...- . -.+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 555555555556666666555553221 22234455555555555666555555555544331 0 012344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 229 CNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 229 ~~la~~~~~~~~~~~A~~~~~~al 252 (595)
..-|.+....++|..|..++-.+.
T Consensus 233 C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 233 CAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555555667888877776543
No 441
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.91 E-value=95 Score=28.49 Aligned_cols=185 Identities=13% Similarity=0.017 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHcCCCcHHH
Q 007634 48 GKDALSYANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQM--------QNMGRLAFDSFSEAVKLDPQNACA 118 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~ 118 (595)
-..++...+...+.++| ..|++.-...+..+|....+|...-.+... ..-.+.-+..+..+++-+|++...
T Consensus 31 y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~Yqi 110 (328)
T COG5536 31 YHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQI 110 (328)
T ss_pred cchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhh
Confidence 34455566666666666 477888888888888776666655555443 122456778899999999999999
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 007634 119 HTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196 (595)
Q Consensus 119 ~~~la~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 196 (595)
|...-.++... .++..-..+.++.++.++.+...+...-.++.. +.-.....++..-.++-..++..++.+..+|..
T Consensus 111 W~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~-ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~ 189 (328)
T COG5536 111 WHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRT-IEDLFNFSDLKHELEYTTSLIETDIYNNSAWHH 189 (328)
T ss_pred hHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeec-chhhccchhHHHHHHhHHHHHhhCCCChHHHHH
Confidence 98887777665 668888888999999999876654322111111 222233345556677777888889999888877
Q ss_pred H---HHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007634 197 L---GVVYSELMQ------YDTALGCYEKAALERPMYAEAYCNMGV 233 (595)
Q Consensus 197 l---a~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~la~ 233 (595)
. -...+..|+ +++-+++.-..+-.+|++..+|..+-.
T Consensus 190 r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 190 RYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 6 333334444 445556666666678888777765533
No 442
>PF13041 PPR_2: PPR repeat family
Probab=68.68 E-value=27 Score=22.07 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAAL 219 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (595)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444455555555555555555444
No 443
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=66.50 E-value=11 Score=20.62 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=9.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 007634 197 LGVVYSELMQYDTALGCYEKA 217 (595)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~a 217 (595)
+-..|.+.|++++|.+.+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 334444444444444444443
No 444
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=66.10 E-value=17 Score=28.99 Aligned_cols=83 Identities=19% Similarity=0.130 Sum_probs=48.3
Q ss_pred hHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCC---------------------CCHHHHH
Q 007634 501 SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG---------------------IDEKKVA 559 (595)
Q Consensus 501 ~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~a 559 (595)
+++.-...+++.| +++|+|.+.+.+...+.+.+..++ +...|+-+.+ ..++.+.
T Consensus 9 SIG~qtLdVi~~~-~d~f~v~~Lsa~~n~~~L~~q~~~----f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~ 83 (129)
T PF02670_consen 9 SIGTQTLDVIRKH-PDKFEVVALSAGSNIEKLAEQARE----FKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLE 83 (129)
T ss_dssp HHHHHHHHHHHHC-TTTEEEEEEEESSTHHHHHHHHHH----HT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHH
T ss_pred HHHHHHHHHHHhC-CCceEEEEEEcCCCHHHHHHHHHH----hCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHH
Confidence 4566666677777 567888887654333333222221 1123333321 1355677
Q ss_pred HHHHhCCCcEEEeCCCCCCCChhhhhhcC
Q 007634 560 AMVREDKIDILVELTGHTANNKLGMMACQ 588 (595)
Q Consensus 560 ~~i~~d~idilvdl~g~t~~~~~~~~a~r 588 (595)
+.+..+++|++|.-..++.|-++-+.|++
T Consensus 84 ~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~ 112 (129)
T PF02670_consen 84 ELAEEPEVDIVVNAIVGFAGLKPTLAAIK 112 (129)
T ss_dssp HHHTHTT-SEEEE--SSGGGHHHHHHHHH
T ss_pred HHhcCCCCCEEEEeCcccchHHHHHHHHH
Confidence 88888999999999988888887776654
No 445
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.02 E-value=3.9e+02 Score=34.51 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHH---HHHHHHHhcC-CHHHHHHHHHHHHH-h--CCCcHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLN---NLGVVYTVQG-KMDAAAEMIEKAIA-A--NPTYAEAY 405 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~---~la~~~~~~g-~~~~A~~~~~~al~-~--~p~~~~~~ 405 (595)
+.+.+..|.+..+.|-++-++..+.+...+..-. .++.. .-+.+|.... ....+++..+..-- . +...++.+
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 3445566667777777777777777776653211 22222 2233343333 33334333332211 1 11225778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
...|..+.+.|+.++|-..|..|++++-.-+.+|.....
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~ 2854 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGK 2854 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 889999999999999999999999998887777766543
No 446
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.33 E-value=1e+02 Score=32.58 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=69.5
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHcC-CCc
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLD-PQN 115 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~ 115 (595)
..++....+-..|....+|+.-+++.+.+ +.-|+. ....+..+.++- +-|+-++|+...-.+++.. |-.
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 45566666777778888888888777764 334421 122333333333 3477888998888888764 445
Q ss_pred HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCC
Q 007634 116 ACAHTHCGILYKD---------EGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 116 ~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~~~~ 149 (595)
++.+...|.+|.. .+..+.|+++|+++.+..|..
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 6677777777654 356788999999999998874
No 447
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.31 E-value=2.1e+02 Score=30.87 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (595)
...+-..-..++++.-|+-|+.+.+.- ..+++. .+.+...|.-++..|++++|...|-+.+..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 344455667778888888888876652 223332 357778889999999999999999888754
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.79 E-value=1.2e+02 Score=27.94 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCH---H
Q 007634 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA---D 301 (595)
Q Consensus 225 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~ 301 (595)
.+++.++|..|.+.++.+.+.+.+.+.+...-... .....-.+-..+|.+|..+.-.++.++..+..++...+.. .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg-~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG-LKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 56788888888888888888888777665432211 1111122233444444444444454554444444332211 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
.-...|.......++.+|-.++..++.
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 122233344444445555555444443
No 449
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=63.14 E-value=33 Score=26.81 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 338 NNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
..+|....+.+++-.++-+|++|+.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 34555555555555555555555543
No 450
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=62.61 E-value=16 Score=32.52 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=14.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 007634 203 ELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~ 223 (595)
..++...|+.+++++++++|+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC
Confidence 345667777777777777765
No 451
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=62.18 E-value=47 Score=34.29 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=68.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (595)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (595)
.+.++...+.+....+.-+.....+....+..+..+-..+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 4456677788888877776666667778888888999999999999999999999998 67788888889999988888
Q ss_pred HHHH
Q 007634 137 ESYH 140 (595)
Q Consensus 137 ~~~~ 140 (595)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 8887
No 452
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.58 E-value=16 Score=25.89 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=13.9
Q ss_pred hCChHHHHHHHHHHHhh
Q 007634 170 AGNTQDGIQKYYEALKI 186 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~ 186 (595)
.|++++|+.+|.++++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 48899999999888764
No 453
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.16 E-value=56 Score=23.14 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=9.9
Q ss_pred HHHHHHhCChHHHHHHHHHH
Q 007634 164 GTSLKLAGNTQDGIQKYYEA 183 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~ 183 (595)
+.-+-..|++.+|+.+|+++
T Consensus 13 AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHhcCCHHHHHHHHHHH
Confidence 33334445665555555444
No 454
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.53 E-value=16 Score=32.48 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=55.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC---CCC---------HHHHHHHHHHHHHhCCHHH--HHHHHHHHHHc--CCCc--HHH
Q 007634 57 ILRSRNKFVDALALYEIVLEKD---SGN---------VEAHIGKGICLQMQNMGRL--AFDSFSEAVKL--DPQN--ACA 118 (595)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~---p~~---------~~~~~~la~~~~~~g~~~~--A~~~~~~al~~--~p~~--~~~ 118 (595)
-++..|+|+.|+++.+-+++.+ |++ ++-...-+......|..-+ -...+..+... -|+. ...
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 3567899999999999999864 332 1222333344444554211 11222222211 1333 345
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCCH
Q 007634 119 HTHCGILYK---------DEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 119 ~~~la~~~~---------~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
+...|..+. ..++...|+.++++++.++|+..
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 566677663 44678899999999999998743
No 455
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.20 E-value=50 Score=34.90 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=82.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQ--NMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
....+..+++.++|.+|.--|..++..-|. ........+.|+... |++..++.-..-++...|....+++..+.
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 344567778888888887777777777663 344566677776654 68999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 154 (595)
+|...+.++-|++...-.....|.+..+..
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 999999999999998877888898865533
No 456
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=58.18 E-value=1.3e+02 Score=27.94 Aligned_cols=102 Identities=18% Similarity=0.092 Sum_probs=67.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH---HHHhCCH----HHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 54 YANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGIC---LQMQNMG----RLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~---~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
....++..++|++=-..+.+......+ ..+..+..+.. .+.+... ..-...++.-++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567788999999999999888764332 11111222211 1122211 24667778888899999999888888
Q ss_pred HHHHcC----------------------CHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 125 LYKDEG----------------------RLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 125 ~~~~~g----------------------~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
.+.... -.+.|...+.++++++|+...+...
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~ 138 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIG 138 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 776421 2567888899999999998776433
No 457
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=58.03 E-value=27 Score=19.40 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALS 144 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~ 144 (595)
|..+-..|.+.|++++|...|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555666777777777777776654
No 458
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.24 E-value=1.7e+02 Score=27.57 Aligned_cols=102 Identities=7% Similarity=0.054 Sum_probs=70.5
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEA 227 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~ 227 (595)
..++.+.+..|.+.|+-+.|++.+.+..+..-. -.-....+|..|....-..+-++-.+..++...+. -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 455888899999999999999999887766322 23445567777766655555555555555554432 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
-...|.......++.+|...|-.++......
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 3344666777889999999999988766553
No 459
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=56.76 E-value=2e+02 Score=28.13 Aligned_cols=61 Identities=7% Similarity=-0.186 Sum_probs=40.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (595)
.+..++..++|..|...|..+....++...............|..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4557888999999999999999875532221111111122334455667889999999986
No 460
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.48 E-value=42 Score=29.18 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
+..++..++.++..|+ +..+..++.++...|+.++|.....++....|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3445555666666664 777888888888888888888888888888884
No 461
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=55.79 E-value=79 Score=24.87 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHH----HHhc
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------AEAYNNLGVLYRDAGSISLAIDAYEQ----CLKI 431 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~----al~~ 431 (595)
+..+|....+.+++-.++-.|++|+.+..+- .....+||..+..+|+.+-.+++++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678888899999999999999998763211 23456899999999999999999874 4567
Q ss_pred CCCChhhhh
Q 007634 432 DPDSRNAGQ 440 (595)
Q Consensus 432 ~p~~~~~~~ 440 (595)
-|.-+...-
T Consensus 84 iPQCp~~~C 92 (140)
T PF10952_consen 84 IPQCPNTEC 92 (140)
T ss_pred ccCCCCcch
Confidence 777665443
No 462
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=54.89 E-value=34 Score=23.66 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
.++..|..+-+.|++++|+.+|.+++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666777777666666554
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.65 E-value=3.2e+02 Score=29.86 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS 79 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 79 (595)
....-+..|..+...|++.+|++.|+.++-.-|
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhhee
Confidence 355677889999999999999999999986544
No 464
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.37 E-value=48 Score=35.05 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=43.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 007634 309 AYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (595)
Q Consensus 309 ~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (595)
.++..+++..|.--|..++.+-|.+ .....+.+.++.. .|++.+++.-..-++...|....++...+.+|...+
T Consensus 62 ~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~ 141 (748)
T KOG4151|consen 62 KLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALN 141 (748)
T ss_pred HHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHH
Confidence 3344444444444444444443321 2223333333332 335555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCc
Q 007634 383 KMDAAAEMIEKAIAANPTY 401 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~ 401 (595)
.++-|.+.+.-.....|..
T Consensus 142 k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 142 KLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred HHHHHHHHHHHHhcCCCCc
Confidence 5555555544444445554
No 465
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=54.23 E-value=4.2 Score=41.89 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=16.0
Q ss_pred CeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEee
Q 007634 487 PLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS 524 (595)
Q Consensus 487 ~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~ 524 (595)
.+-.=|+..+ -.-+.++.+.+..|.....=||+=+
T Consensus 399 d~D~ifl~a~---~~~ar~ikP~l~~~~a~~lPvyatS 433 (536)
T PF04348_consen 399 DIDAIFLVAN---PEQARLIKPQLDFHFAGDLPVYATS 433 (536)
T ss_dssp T--EEEE------HHHHHHHHHHHTT-T-TT-EEEE-G
T ss_pred CCCEEEEeCC---HHHHHHHhhhcccccCCCCCEEEec
Confidence 3444455552 3346788899999855554444433
No 466
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.61 E-value=26 Score=25.11 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHHc
Q 007634 348 DNLDKAVECYQMALS 362 (595)
Q Consensus 348 ~~~~~A~~~~~~al~ 362 (595)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 455555555554443
No 467
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.30 E-value=29 Score=24.89 Aligned_cols=14 Identities=21% Similarity=0.641 Sum_probs=6.3
Q ss_pred CChHHHHHHHHHHH
Q 007634 171 GNTQDGIQKYYEAL 184 (595)
Q Consensus 171 ~~~~~A~~~~~~~l 184 (595)
|+.++|+.+|++++
T Consensus 22 g~~e~Al~~Y~~gi 35 (79)
T cd02679 22 GDKEQALAHYRKGL 35 (79)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 468
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.08 E-value=34 Score=24.30 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
+-.+...|..+=+.|+|++|+.+|..+++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34456666666777777777777776665
No 469
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=53.03 E-value=1.5e+02 Score=30.76 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=51.6
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (595)
.+....+.+....+.-+.-........+..+..+-..+..++|-.+|++.+..+|+ ..+...+.-+.+.|-...|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34445555555555555444455556666677777777777777777777777766 5566666667777777777666
Q ss_pred HH
Q 007634 391 IE 392 (595)
Q Consensus 391 ~~ 392 (595)
++
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 65
No 470
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.39 E-value=40 Score=18.72 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 194 YYNLGVVYSELMQYDTALGCYEKAA 218 (595)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al 218 (595)
|..+...+.+.|+++.|...++...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444555555555555554443
No 471
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=52.11 E-value=27 Score=24.88 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
+-.++..|..+=..|+|++|+.+|.++++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556666666666777766666665554
No 472
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=51.19 E-value=87 Score=24.08 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (595)
.....|...+..|++..|.+.+.++.+..+..+-.+..-+.....+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 445566667777888888888888866655555555555555555553
No 473
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=50.58 E-value=2.2e+02 Score=26.85 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH----HcCCCc----------
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV----KLDPQN---------- 115 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~---------- 115 (595)
..+..-...+.++++.+.++.+++.+..+|--.+..+..+.++.++| ++.+.......+ +.-|.-
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtP 179 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTP 179 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCC
Confidence 34444444458889999999999999999988899999999999999 455555444333 233321
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH-h-hCCC-
Q 007634 116 ---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL-K-IDPH- 189 (595)
Q Consensus 116 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l-~-~~~~- 189 (595)
......+...-...+. +.. ......+...+. .. ...-+......+..+.|+..++..+ . ..|.
T Consensus 180 Fad~~T~~WL~~~~~~~~~---~~~---~~~~~~~~~~~~-~~----~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~ 248 (301)
T TIGR03362 180 FADDETRAWLAQHATRSNA---ASV---APVAEVGEESDW-EE----LREEARALAAEGGLEAALQRLQQRLAQAREPRE 248 (301)
T ss_pred CCCHHHHHHHHhccccccc---ccc---cccccCcccccH-HH----HHHHHHHHHHcCCHHHHHHHHHhhcccCCChHH
Confidence 1122211111000000 000 000000100111 00 2233455566788999999998742 2 3333
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (595)
.......++.++...|.++-|...|+.+.+.
T Consensus 249 rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 249 RFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555677888999999999999999988764
No 474
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=50.43 E-value=77 Score=21.44 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (595)
..+..+...|+|=+|-+.++.+....+.. ......+.+....|....+.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566777888889999998888765544 44444455555566666777777777654
No 475
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.37 E-value=2.6e+02 Score=27.45 Aligned_cols=95 Identities=20% Similarity=0.146 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-------C-CCHH
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSIK-------P-NFSQ 369 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~-~~~~ 369 (595)
.++..+|.-|...|+.+.|++.|.++-..... ....+.++-.+-...|+|..-..+-.++...- + -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 35677888888888888888888886554332 24566677777777788877777777665541 0 0122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+...-|.+...+++|..|.+++-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44445555666668888887776653
No 476
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.89 E-value=92 Score=22.20 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=5.1
Q ss_pred CChHHHHHHHHH
Q 007634 171 GNTQDGIQKYYE 182 (595)
Q Consensus 171 ~~~~~A~~~~~~ 182 (595)
|++++|+.+|.+
T Consensus 20 g~y~eAl~~Y~~ 31 (77)
T cd02683 20 GRFQEALVCYQE 31 (77)
T ss_pred ccHHHHHHHHHH
Confidence 444444444433
No 477
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.81 E-value=46 Score=31.64 Aligned_cols=59 Identities=14% Similarity=-0.044 Sum_probs=43.7
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCCHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKD--------SGNVEAHIGKGICLQMQNMGRLAF 102 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~ 102 (595)
.......++..|+..+.++++++|...|..+..+. -++.++++.+|..++..++.+..+
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33467889999999999999999999999987642 124466777777777766665443
No 478
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=48.88 E-value=1e+02 Score=30.58 Aligned_cols=104 Identities=19% Similarity=0.157 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----C-H---HH--HHH------HHHHHH-HhCC-----HHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG----N-V---EA--HIG------KGICLQ-MQNM-----GRLAFDSF 105 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~-~---~~--~~~------la~~~~-~~g~-----~~~A~~~~ 105 (595)
....+..|..++..|++.+|+..|+.+|..-|- + . ++ +.. +|.... .... .++....+
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~l 283 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNL 283 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 455778999999999999999999999875321 1 1 11 111 221111 1111 11222222
Q ss_pred HHHH-----HcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 106 SEAV-----KLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 106 ~~al-----~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
+-+. ++.|.+.. ++..--...++.++|..|..+.++.+++.|....
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 2221 12222222 2222234556789999999999999999887543
No 479
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=48.87 E-value=2.4e+02 Score=26.67 Aligned_cols=147 Identities=13% Similarity=-0.001 Sum_probs=91.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcCC---HH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH----FNPHCAEACNNLGVIYKDRDN---LD 351 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~~~---~~ 351 (595)
.+++.+.++..++.+..+|--.+..+..+.++.++|. +.+.......+. .-|.-.... +.-|- -+
T Consensus 112 ~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~-------F~DGtPFad~ 183 (301)
T TIGR03362 112 QADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELK-------FSDGTPFADD 183 (301)
T ss_pred CCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcc-------cCCCCCCCCH
Confidence 4677888999999998899888999999999999994 555444443332 233211111 11110 01
Q ss_pred HHHHHHHHHHc-----------cCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHc
Q 007634 352 KAVECYQMALS-----------IKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDA 415 (595)
Q Consensus 352 ~A~~~~~~al~-----------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 415 (595)
+....+..... ..+ ........-+......+..++|+..++..+...++. ....+.++.++...
T Consensus 184 ~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~ 263 (301)
T TIGR03362 184 ETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQA 263 (301)
T ss_pred HHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHc
Confidence 11112211100 001 112223344677788899999999999866543322 34566789999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 007634 416 GSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 416 g~~~~A~~~~~~al~~~p 433 (595)
|..+-|...|+...+.-.
T Consensus 264 g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 264 GKAELAQQLYAALDQQIQ 281 (301)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999887644
No 480
>PRK12798 chemotaxis protein; Reviewed
Probab=47.37 E-value=2.9e+02 Score=27.26 Aligned_cols=198 Identities=15% Similarity=-0.000 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHcCCCcH---HHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEK-DSGNVEAHIGKGIC-LQMQNMGRLAFDSFSEAVKLDPQNA---CAHTH 121 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 121 (595)
+.+.-+..|-..+-.|+-.+|.+.+..+-.. .|.....++.|... .+...+..+|+..|..+-=..|... -++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 4445555555556666666666665554221 12222233333222 2334456666666666666666532 13333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh-CCC-CHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPH-YAPAYYNLGV 199 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~~~-~~~~~~~la~ 199 (595)
--.+..+.|+.+++..+-.+.+.....++-+.... ..........++-. -.+.+...+.. +|. ....|..++.
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~----~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR 265 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFA----QRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIAR 265 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHH----HHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 33444556666666666655555544433322111 11111111111111 11123333332 222 3455666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 200 VYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
.-.-.|+.+-|.-.-++++.+... ...+.+..+....-..++++++..+.
T Consensus 266 ~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 266 AALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 666666666666666666655422 12233333333333444555554443
No 481
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.10 E-value=1.5e+02 Score=23.68 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 318 MAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 318 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
.+.+.|+.+... ....+..|...|..+...|++++|.+.|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 444444443332 2333444444455555555555555544443
No 482
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.75 E-value=1.3e+02 Score=23.06 Aligned_cols=89 Identities=6% Similarity=-0.127 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (595)
.+.+.|..-......++|..+.+-.-........+.......+..+|+|++|+ . +......++.--..+.+-.+.
T Consensus 8 lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l--~~~~~~~pdL~p~~AL~a~kl 82 (116)
T PF09477_consen 8 LLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---L--LPQCHCYPDLEPWAALCAWKL 82 (116)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---H--HHTTS--GGGHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---H--hcccCCCccHHHHHHHHHHhh
Confidence 34556666777788899988877654443334456667788899999999992 2 233444566666677788899
Q ss_pred CCHHHHHHHHHHHH
Q 007634 130 GRLVEAAESYHKAL 143 (595)
Q Consensus 130 g~~~~A~~~~~~~l 143 (595)
|--+++...+.+.-
T Consensus 83 GL~~~~e~~l~rla 96 (116)
T PF09477_consen 83 GLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHH
Confidence 99998888887653
No 483
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.29 E-value=2.2e+02 Score=28.15 Aligned_cols=47 Identities=15% Similarity=-0.121 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc-----------CCCcHHHHHHHHHHHHHcCC
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKL-----------DPQNACAHTHCGILYKDEGR 131 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~ 131 (595)
++..|.+.+....|++|+.++-.|-+. -.+.+-.-..+.+||+...+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkn 223 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKN 223 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcc
Confidence 445667777888888888777655433 12233344455677777654
No 484
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=46.21 E-value=49 Score=18.68 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHh
Q 007634 417 SISLAIDAYEQCLK 430 (595)
Q Consensus 417 ~~~~A~~~~~~al~ 430 (595)
+..+|..+|+++.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555555443
No 485
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.35 E-value=2.8e+02 Score=26.45 Aligned_cols=166 Identities=13% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHcCCCc----------------------------
Q 007634 67 ALALYEIVLEKDSGNVEAHI---GKGICLQMQNMGRLAFDSFSEAVKLDPQN---------------------------- 115 (595)
Q Consensus 67 A~~~~~~~l~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------- 115 (595)
+-..|++..+.-|++....+ ..|.+++..++|.+....|..+-......
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh----
Q 007634 116 -----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI---- 186 (595)
Q Consensus 116 -----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---- 186 (595)
....+.+|.-|...++++.|.--|.++......-.+....-..--..--.......+++..+..-.++++.
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~n 199 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSN 199 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHH
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007634 187 ---------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (595)
Q Consensus 187 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 232 (595)
+-.++.+-+..+..+.-.|++.++...+..+.-+.|+........+
T Consensus 200 y~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 200 YLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred HHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
No 486
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=44.92 E-value=59 Score=18.85 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHh
Q 007634 418 ISLAIDAYEQCLK 430 (595)
Q Consensus 418 ~~~A~~~~~~al~ 430 (595)
.++|..+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555544
No 487
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.81 E-value=5.2e+02 Score=29.44 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------cCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 007634 115 NACAHTHCGILYKDEGRLVEAAESYHKALS----------------------ADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (595)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------------~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (595)
.+...+.+|.+|...|...+|+.+|.++.. .+.+.+.........|...-..+...+-
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Q ss_pred hHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH------
Q 007634 173 TQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE------ 242 (595)
Q Consensus 173 ~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~------ 242 (595)
.+.+.+....+++. +|..+..+..+-+-+..+|.+-+|...+-+--. ....-..+..+-.++++.|+++
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd-serrrdcLRqlvivLfecg~l~~L~~fp 1077 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD-SERRRDCLRQLVIVLFECGELEALATFP 1077 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhccchHHHhhCC
Q ss_pred ------HHHH-HHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 007634 243 ------SAIA-CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (595)
Q Consensus 243 ------~A~~-~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (595)
+-.. ..+.+-...|.....++.+-.++... .+++.+|-...
T Consensus 1078 figl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~------RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1078 FIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVA------RHNFRKAATVM 1125 (1480)
T ss_pred ccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh------hcchhHHHHHH
No 488
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.71 E-value=71 Score=22.02 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=11.0
Q ss_pred HHHHHHhCChHHHHHHHHHHH
Q 007634 164 GTSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l 184 (595)
|.-.-..|++++|+.+|.+++
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 333344466666666655544
No 489
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=44.24 E-value=2.7e+02 Score=25.91 Aligned_cols=135 Identities=12% Similarity=-0.046 Sum_probs=72.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHH---HHHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007634 89 GICLQMQNMGRLAFDSFSEAVKLDPQ--NACAHTHCGIL---YKDEGR----LVEAAESYHKALSADPSYKPAAECLAIV 159 (595)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~g~----~~~A~~~~~~~l~~~~~~~~~~~~~a~~ 159 (595)
...++..++|++=...+.+..+...+ ..+..+..+.. ...... ...-...++.-++..|++..++...+..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34567788888877777777654322 11111222211 111211 1245677788888999999887777777
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
+...|....-.| +. +.-....+.... .-.+.|...+.++++++|....+...+-.+-...|
T Consensus 87 ~~~~Aw~~RG~~-~A------------~~V~~~~W~~~~------~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 87 WVHRAWDIRGSG-YA------------STVTEAQWLGAH------QACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHHHHHccc-hh------------cccCHHHHHHHH------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 766554433211 10 000111111111 12356666777777777776666666666666666
Q ss_pred CHH
Q 007634 240 DLE 242 (595)
Q Consensus 240 ~~~ 242 (595)
+.+
T Consensus 148 eP~ 150 (277)
T PF13226_consen 148 EPD 150 (277)
T ss_pred Cch
Confidence 554
No 490
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.89 E-value=2.4e+02 Score=27.93 Aligned_cols=102 Identities=16% Similarity=0.061 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHHcCCH----------HHHH
Q 007634 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-----------DPHYAPAYYNLGVVYSELMQY----------DTAL 211 (595)
Q Consensus 153 ~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----------~~~~~~~~~~la~~~~~~g~~----------~~A~ 211 (595)
...++..+...|........|++|+.++-.+-+. -.+.+..-..+..||+.+.+. ..|.
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~ 238 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRAR 238 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHH
Confidence 3445666777888888888899888877555333 223344445566777776653 2334
Q ss_pred HHHHHHHH--------h-CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 212 GCYEKAAL--------E-RPMYA------EAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 212 ~~~~~al~--------~-~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
+.|.++.- + .+..+ ..+..-|.+.+.+|+-++|.++++.+...
T Consensus 239 kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 239 KGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 44433321 1 12222 34555688999999999999999988653
No 491
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=43.64 E-value=2.6e+02 Score=25.61 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=92.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhHH
Q 007634 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA-ECLAIVLTDLGT 165 (595)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-~~~a~~~~~l~~ 165 (595)
..+.++-++++ +.|+..+...+......+......|.++-..| ..+...+.++.. .+|.-.-.- ..+|.-......
T Consensus 55 e~ay~LgQ~~~-~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 55 ELAYVLGQMQD-EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred chhhhhhhhcc-chhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhhHHHHHHHh-cCCccccchHHHHHHHHHHHhh
Confidence 34444433333 55666666666666666666666666666666 555666666666 333321110 111111111000
Q ss_pred HHHH--------hCChH-----HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007634 166 SLKL--------AGNTQ-----DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (595)
Q Consensus 166 ~~~~--------~~~~~-----~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 232 (595)
.... .-+.. ..+.-++..+ +++..+......+..+.+.-.-++|+..+-+.+..+ .+-.....|
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~l-ld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvA 208 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAEL-LDETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVA 208 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHH-HhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHH
Confidence 0000 00000 0011111111 133334444445555555555588888777766554 445555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhh
Q 007634 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (595)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~ 273 (595)
.++-+++. ..|+..+.+.+.....++.....-+.++..+|
T Consensus 209 fVfGQl~s-~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 209 FVFGQLQS-PAAIPSLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHHhhccc-hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 66665543 66888888888887778777777777666654
No 492
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.34 E-value=2.7e+02 Score=30.72 Aligned_cols=99 Identities=17% Similarity=0.019 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChH--------HHHHHHHHHHhhCCCCHH
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--------DGIQKYYEALKIDPHYAP 192 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~--------~A~~~~~~~l~~~~~~~~ 192 (595)
..+..+..-|.+..|...|....+ ++.+..++...+..+-..+..++.+.+.. .|...+....+..+.-..
T Consensus 181 k~aD~~~~f~h~~~a~~~y~stkr-d~~nd~am~~~a~alEm~sls~Fvq~~a~q~~sqyme~a~~~~~~i~k~~~~A~r 259 (960)
T KOG1938|consen 181 KGADLLFMFGHPNLAFDAYHSTKR-DFNNDKAMVYYAGALEMRSLSAFVQPDATQFPSQYMENAFPLYRLILKNYQDANR 259 (960)
T ss_pred hccchhhhhccccchhhhhhhhhc-chhhhhHHhHhhhhhhhhhhhhhcCCcchhhHHHHHhhhhHHHHHHHhhccchhh
Confidence 344555666677777777776654 33444444333333333333333333322 244445555554444445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (595)
.....+.++...|.+.+|.+.+-+....
T Consensus 260 c~l~~aei~k~~~lh~eaa~~~~r~~se 287 (960)
T KOG1938|consen 260 CVLNSAEILKFLGLHKEAAEALARETSE 287 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHhhCc
Confidence 5555566666666666665555554433
No 493
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.23 E-value=64 Score=32.00 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 99 (595)
..+..+.+|...+.+|+|.=+.+++++++-.+|++..+....+.++.++|--.
T Consensus 451 GadrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqa 503 (655)
T COG2015 451 GADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQA 503 (655)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhh
Confidence 45677888888888888888888888888888888888888888888777443
No 494
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.99 E-value=47 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
++..|...=..|+|++|+.+|.++++
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 33344444444555555555554443
No 495
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=42.44 E-value=36 Score=32.85 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhc-----CCHHHHHHHHHHHHh
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE-----GDINQGVAYYKKALY 294 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~ 294 (595)
...|+.+++++.. .+.|..|..++.++..+|+++... .-|.+|..++.+|-.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 4567778877765 566779999999999999887532 336666666666643
No 496
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.93 E-value=40 Score=23.90 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
..+|...+.++++.+.. |++++|..+|..+++.
T Consensus 3 l~~A~~l~~~Ave~d~~---------------~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 3 LEQAAELIRLALEKEEE---------------GDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHH
No 497
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=41.17 E-value=64 Score=22.77 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
..++..|...-..|+|++|+.+|.++++
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555666666666666655544
No 498
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.13 E-value=1.2e+02 Score=20.57 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH
Q 007634 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (595)
Q Consensus 230 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (595)
..+..+...|+|=+|-+.++..-...+.. ......+.+....+......|+...|..
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34566777888888888888887655544 3333334444444444455555555544
No 499
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.02 E-value=80 Score=24.91 Aligned_cols=37 Identities=27% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
..+|..+...|++++|...|-+|+...|+-...+..+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
No 500
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.96 E-value=73 Score=18.18 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhCCC
Q 007634 384 MDAAAEMIEKAIAANPT 400 (595)
Q Consensus 384 ~~~A~~~~~~al~~~p~ 400 (595)
++.|...|++.+...|+
T Consensus 3 ~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE 19 (32)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34445555555544443
Done!